BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006615
         (638 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|255585152|ref|XP_002533281.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526906|gb|EEF29113.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 652

 Score =  888 bits (2294), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/631 (68%), Positives = 516/631 (81%), Gaps = 15/631 (2%)

Query: 20  QTRSFVRAPFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLND-RLLDPFIVTHALRS 78
           Q R FVR PF NKL  YLRRA+LIDSIRLA+RSNS NS+++ LN+ R+LDPF++TH +RS
Sbjct: 19  QIRFFVRDPFPNKLTHYLRRAELIDSIRLALRSNSPNSITTFLNNTRILDPFVITHTIRS 78

Query: 79  APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV 138
           AP+ADSAL ++E LK+ P+F+HNQST+HALATVLA+S ++ ELK+L+ +I+  K+ NV V
Sbjct: 79  APSADSALFLIEILKNIPHFTHNQSTIHALATVLARSCKSFELKSLLNEINVGKYCNVRV 138

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
           +FMNLMQWY+  GDL+ VL  W+EYR   K + TESYNI+MS++AK G + +AVE F ++
Sbjct: 139 SFMNLMQWYAAVGDLDAVLDVWDEYRHSDKRVCTESYNIIMSLFAKMGNDAKAVEIFYRM 198

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
           IDEGAIPNSRTYTVMIEHLV LGKLDSA+EVFS LPLMRIKRT KQY +LV+GFVGVERF
Sbjct: 199 IDEGAIPNSRTYTVMIEHLVKLGKLDSAIEVFSVLPLMRIKRTLKQYSVLVDGFVGVERF 258

Query: 259 DEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGS 318
           DE K L+NEM+ DGKFPGRAM  AL+RMQE GF++   EF++EM PD+RIK++    DGS
Sbjct: 259 DEVKKLVNEMKVDGKFPGRAMHSALQRMQEAGFVEETKEFVKEMFPDERIKSIGSCSDGS 318

Query: 319 DDDED--ENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLV 376
           DDDED  EN +N         V+LKPWLDPKALAN L +WSPEVVS+L DAKFVWTTRLV
Sbjct: 319 DDDEDDYENVNNGDVHTDTSEVRLKPWLDPKALANALSQWSPEVVSMLEDAKFVWTTRLV 378

Query: 377 CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
           CKVLR+F SPETAW+FFCWVAYQPG+THDVY +++M+T+LARHG VELVD+LI K+R +G
Sbjct: 379 CKVLRNFSSPETAWYFFCWVAYQPGFTHDVYTVQRMMTLLARHGKVELVDKLITKIRIEG 438

Query: 437 MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
           MRLPFSTIRLIIDFYGISK ADAALK F DDR LCG I+KF LMLLYSSLLRTLTKC R+
Sbjct: 439 MRLPFSTIRLIIDFYGISKNADAALKVFRDDRPLCGSITKFNLMLLYSSLLRTLTKCNRN 498

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
            DAI+VLEEMI  GI PD+QT+SGLMYHFALQGD K  QKLF++VRQ+GVEPDAYMFKVL
Sbjct: 499 SDAIDVLEEMILCGISPDIQTYSGLMYHFALQGDIKTAQKLFTIVRQSGVEPDAYMFKVL 558

Query: 557 IQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND 604
           I AYCK             + NSNLMPD ATK+ L KSLWKEG+RKEAA VEE CE+ N+
Sbjct: 559 ILAYCKCERAALAWRVFEDMKNSNLMPDTATKDFLIKSLWKEGKRKEAAIVEESCEESNN 618

Query: 605 VPSLALRGHIWAVSSADLTRVHSIYRNSITS 635
           V  L LRGHIW VSSADLTRV++IY N+  S
Sbjct: 619 VLPLVLRGHIWTVSSADLTRVYNIYSNTFKS 649


>gi|356540722|ref|XP_003538834.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66631-like [Glycine max]
          Length = 658

 Score =  782 bits (2020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/648 (58%), Positives = 492/648 (75%), Gaps = 21/648 (3%)

Query: 6   FLPAVILSKAFTQLQTRSFVR--APFTNKLALYLRRAQLIDSIRLAVRSNSSN-SLSSLL 62
           F  A +L+   +++Q RS+ R   PF  K++ YL RA+LIDSIRL +RSN+ N SL SL+
Sbjct: 9   FREANLLNGLTSRVQARSYARRREPFPTKVSHYLHRAKLIDSIRLTLRSNTPNPSLPSLI 68

Query: 63  NDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELK 122
           N RL+D F+ THALRSAP+ADSALS + AL+ + +FSH   TLH+LATVLAKS R+ ELK
Sbjct: 69  NHRLMDSFVATHALRSAPSADSALSFVRALEKSSHFSHTHHTLHSLATVLAKSGRSSELK 128

Query: 123 TLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVY 182
           +L+ DI +++F +V ++FMNLMQW++   DL+ VL  W +Y      L TESYNIVM++Y
Sbjct: 129 SLVDDIRANRFGSVQISFMNLMQWHAAVRDLDTVLQVWEQYALENDHLCTESYNIVMTLY 188

Query: 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
           A+ GK+FEAV  FR++IDEG++PN R+YTV+IEHLV   KL  ALEVF+ LP MRIKRT 
Sbjct: 189 AQMGKDFEAVRVFRRMIDEGSLPNCRSYTVIIEHLVKSRKLSEALEVFNLLPSMRIKRTL 248

Query: 243 KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREM 302
           +QY +L+EGFVG ++FDE + L+ EM+ DG  P R M + L++M+E G ++G  + LR +
Sbjct: 249 RQYSVLLEGFVGSKQFDEVRILVEEMQVDGILPSRGMGLLLQQMKEEGILEGKEQLLRGI 308

Query: 303 LPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAY------GVQLKPWLDPKALANTLDEW 356
           LPD+ I++V Y  D  D+DE+EN+D +  +  A       G+ LKPW+DP+AL + L  W
Sbjct: 309 LPDETIRSVSYSIDSGDEDENENEDQDENISDAGQCNHVDGIHLKPWMDPRALVSALRNW 368

Query: 357 SPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTIL 416
           SP+ V+ L  A FVWTTRLVCK+LR+FK+PE AW FFCW A Q G+THD+Y ++++ T+L
Sbjct: 369 SPDEVAALESANFVWTTRLVCKMLRNFKTPEAAWSFFCWAANQRGFTHDIYTVQRITTLL 428

Query: 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK 476
           ARHG  +LVDRLI+K+R + MRLPFSTIR+IIDFYGISKKADAALK F+DDR LCGPIS 
Sbjct: 429 ARHGRTDLVDRLISKIRMERMRLPFSTIRMIIDFYGISKKADAALKVFNDDRILCGPISN 488

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
             LMLLYSSLLRTLTKC R+ DA+++L++MI +GI PD+QTFSGLMY+F+  GD K VQK
Sbjct: 489 VNLMLLYSSLLRTLTKCGRNSDALDMLDDMILNGICPDIQTFSGLMYYFSQLGDIKTVQK 548

Query: 537 LFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLW 584
           LF+MVRQ+G+EPDAY+FK LIQ YCK             + NS L+PD+ATKELL KSLW
Sbjct: 549 LFAMVRQSGLEPDAYLFKALIQGYCKSERAALAWRLFEDMKNSGLVPDSATKELLVKSLW 608

Query: 585 KEGRRKEAAAVEERCEKINDVPSLALRGHIWAVSSADLTRVHSIYRNS 632
           KEGRR+EAAAVEE  E+IN V  LAL+GH+W VSSADLTRV++IY NS
Sbjct: 609 KEGRRREAAAVEESYEEINTVLPLALQGHVWTVSSADLTRVYNIYSNS 656


>gi|225430876|ref|XP_002269506.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66631-like [Vitis vinifera]
          Length = 660

 Score =  781 bits (2018), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/631 (62%), Positives = 491/631 (77%), Gaps = 18/631 (2%)

Query: 20  QTRSFVRAPFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSA 79
           QTR F   PF+ K++LYL RA+LIDSIRL +RSN+  SL  LLND  +D F+V +AL+SA
Sbjct: 19  QTRYFTHNPFSGKISLYLHRARLIDSIRLILRSNAPRSLIPLLNDPTVDSFVVANALQSA 78

Query: 80  PNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
           P+ DSALS++E LK+ P+F H Q+T+ ALA +LAKSQR+ ELK+L+ DI++ KF NV ++
Sbjct: 79  PSPDSALSLLEILKTIPHFCHTQATIRALAKILAKSQRSAELKSLVDDINAGKFWNVRIS 138

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           FM LM+W++ +GDLE VL  WN YR   K +S E+YNIVM +Y + GK+ EA++ F ++I
Sbjct: 139 FMELMKWHAAAGDLESVLHAWNRYRVSGKQVSIEAYNIVMRLYVQMGKDSEAMQIFHKII 198

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
            EGAIPNSRTYTV++EHL N GKLDSA++VF+ LPLMRI+RT +QY ILVE F  + RFD
Sbjct: 199 SEGAIPNSRTYTVVLEHLANSGKLDSAIKVFNILPLMRIRRTLRQYSILVEEFTSINRFD 258

Query: 260 EAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSD 319
             K+LL+EM+ DG  PGRAM+++L+RMQE GF+   +EFLR MLPD+RIKNV +  D SD
Sbjct: 259 VVKALLDEMQIDGILPGRAMQLSLQRMQEAGFVHETDEFLRGMLPDERIKNVGFCVDSSD 318

Query: 320 DDEDEND--DNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVC 377
           DD+DEN+   +++GV    GVQLKPWLDP+ALAN L+ W P  V  L +AKF+WTTRLVC
Sbjct: 319 DDDDENNHSSDDAGVD---GVQLKPWLDPRALANALNNWDPNEVLALEEAKFIWTTRLVC 375

Query: 378 KVLRHFKSPETAWHFFCWVAYQP-GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
           K+LR+F SPETAW FFCWVAYQP G+ H++Y +++M+T+LARHGHVELV++L+ K+R + 
Sbjct: 376 KILRNFNSPETAWKFFCWVAYQPGGFNHNIYTVQRMMTLLARHGHVELVEKLLLKIRREE 435

Query: 437 MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
           +RLP STIRLIIDFYGIS+ ADAALK FHD  +LCGP+SK  LMLLYSSLLRTLTKC R 
Sbjct: 436 IRLPVSTIRLIIDFYGISRNADAALKVFHDAESLCGPMSKLYLMLLYSSLLRTLTKCGRS 495

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
            DA++VLE+M   GI PDV TFSGLMYHFAL+GD K VQKLF MVRQ+GVEPDAYMFKVL
Sbjct: 496 ADALDVLEQMFLGGICPDVPTFSGLMYHFALEGDFKTVQKLFMMVRQSGVEPDAYMFKVL 555

Query: 557 IQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND 604
           I  YCK             + + NLMPDAATK LL K LWKEGRR+EAA+VEERCE+IN 
Sbjct: 556 IHGYCKCERSALALRVFEDMRSLNLMPDAATKNLLVKCLWKEGRRREAASVEERCEEINY 615

Query: 605 VPSLALRGHIWAVSSADLTRVHSIYRNSITS 635
               ALRGH+W +SSADL RV+ IY NS  +
Sbjct: 616 GLPFALRGHMWTMSSADLKRVYDIYSNSFAA 646


>gi|297735223|emb|CBI17585.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score =  769 bits (1985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/629 (60%), Positives = 473/629 (75%), Gaps = 38/629 (6%)

Query: 20  QTRSFVRAPFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSA 79
           QTR F   PF+ K++LYL RA+LIDSIRL +RSN+  SL  LLND  +D F+V +AL+SA
Sbjct: 19  QTRYFTHNPFSGKISLYLHRARLIDSIRLILRSNAPRSLIPLLNDPTVDSFVVANALQSA 78

Query: 80  PNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
           P+ DSALS++E LK+ P+F H Q+T+ ALA +LAKSQR+ ELK+L+ DI++ KF NV ++
Sbjct: 79  PSPDSALSLLEILKTIPHFCHTQATIRALAKILAKSQRSAELKSLVDDINAGKFWNVRIS 138

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           FM LM+W++ +GDLE VL  WN YR   K +S E+YNIVM +Y + GK+ EA++ F ++I
Sbjct: 139 FMELMKWHAAAGDLESVLHAWNRYRVSGKQVSIEAYNIVMRLYVQMGKDSEAMQIFHKII 198

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
            EGAIPNSRTYTV++EHL N GKLDSA++VF+ LPLMRI+RT +QY ILVE F  + RFD
Sbjct: 199 SEGAIPNSRTYTVVLEHLANSGKLDSAIKVFNILPLMRIRRTLRQYSILVEEFTSINRFD 258

Query: 260 EAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSD 319
             K+LL+EM+ DG  PGRAM+++L+RMQE GF+   +EFLR MLPD+RIKNV        
Sbjct: 259 VVKALLDEMQIDGILPGRAMQLSLQRMQEAGFVHETDEFLRGMLPDERIKNV-------- 310

Query: 320 DDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKV 379
                            G  LKPWLDP+ALAN L+ W P  V  L +AKF+WTTRLVCK+
Sbjct: 311 -----------------GFCLKPWLDPRALANALNNWDPNEVLALEEAKFIWTTRLVCKI 353

Query: 380 LRHFKSPETAWHFFCWVAYQP-GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR 438
           LR+F SPETAW FFCWVAYQP G+ H++Y +++M+T+LARHGHVELV++L+ K+R + +R
Sbjct: 354 LRNFNSPETAWKFFCWVAYQPGGFNHNIYTVQRMMTLLARHGHVELVEKLLLKIRREEIR 413

Query: 439 LPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD 498
           LP STIRLIIDFYGIS+ ADAALK FHD  +LCGP+SK  LMLLYSSLLRTLTKC R  D
Sbjct: 414 LPVSTIRLIIDFYGISRNADAALKVFHDAESLCGPMSKLYLMLLYSSLLRTLTKCGRSAD 473

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A++VLE+M   GI PDV TFSGLMYHFAL+GD K VQKLF MVRQ+GVEPDAYMFKVLI 
Sbjct: 474 ALDVLEQMFLGGICPDVPTFSGLMYHFALEGDFKTVQKLFMMVRQSGVEPDAYMFKVLIH 533

Query: 559 AYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
            YCK             + + NLMPDAATK LL K LWKEGRR+EAA+VEERCE+IN   
Sbjct: 534 GYCKCERSALALRVFEDMRSLNLMPDAATKNLLVKCLWKEGRRREAASVEERCEEINYGL 593

Query: 607 SLALRGHIWAVSSADLTRVHSIYRNSITS 635
             ALRGH+W +SSADL RV+ IY NS  +
Sbjct: 594 PFALRGHMWTMSSADLKRVYDIYSNSFAA 622


>gi|357483203|ref|XP_003611888.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513223|gb|AES94846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 659

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/639 (57%), Positives = 487/639 (76%), Gaps = 21/639 (3%)

Query: 18  QLQTRSFVRA--PFTNKLALYLRRAQLIDSIRLAVRSNSSNS-LSSLLNDRLLDPFIVTH 74
           ++Q R + R   PF  K+  YL RA+LIDSIRL++RSN+ NS LS+L+N RL D F++TH
Sbjct: 18  RIQIRFYTRRRDPFPTKITHYLNRAKLIDSIRLSLRSNNPNSTLSTLINHRLFDSFVLTH 77

Query: 75  ALRSAPNADSALSIMEALKS--NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSK 132
           ALRSAP ADSALS++  +++  + NFSH Q+TLHALATVLAKS +  ELK+LI DI S +
Sbjct: 78  ALRSAPCADSALSLIHTIENTKSSNFSHTQNTLHALATVLAKSGKLVELKSLIDDIESKR 137

Query: 133 FLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV 192
           F NV ++FMNLMQWY+ + D++ V+  W++YR  ++++ TESYNIVM++Y + GK+ EAV
Sbjct: 138 FGNVKISFMNLMQWYAAAKDIDSVVRVWDQYRVESRIVCTESYNIVMTLYVEMGKDSEAV 197

Query: 193 ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
             F +++D+G++PN R+Y+++IEHLV   K   A+EVF+ LPLMRIKRT KQY +L+EG 
Sbjct: 198 GIFCKMVDDGSVPNCRSYSIIIEHLVKCRKFLEAIEVFNLLPLMRIKRTLKQYSVLIEGL 257

Query: 253 VGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVR 312
           VG + FDE   L+NEM+ DG  P R + + L+++++ GF++  +E    + PD+RIK+V 
Sbjct: 258 VGSKMFDEVGVLVNEMQVDGILPSRTVSLLLQQVKDEGFLKDVDELFEGICPDERIKSVS 317

Query: 313 YYEDGSDDDEDE----NDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAK 368
           +  D SD+DE+E    N++  S      G++LKPWLDP++LA+ L  WSP+ VS L  A 
Sbjct: 318 FSIDSSDEDENEYKGENENEVSQCDHVDGIRLKPWLDPRSLASALQNWSPDEVSALEGAN 377

Query: 369 FVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRL 428
           FVWTTRLVCK+LR F+SP+TAW+FFCWVA +PG+TH++Y +++++T+LARHG  ELVDRL
Sbjct: 378 FVWTTRLVCKILRSFRSPDTAWNFFCWVADRPGFTHNIYTVQRIMTLLARHGRTELVDRL 437

Query: 429 IAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLR 488
           I K+R +GMRLPFSTIRLIIDFYGISK ADAALK F+DD+ LCG ISK  LMLLYSSLLR
Sbjct: 438 ILKIRIEGMRLPFSTIRLIIDFYGISKNADAALKVFNDDQILCGSISKVNLMLLYSSLLR 497

Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548
           TLTKC R+ + +++L+EMI +GI PD+QTFSGLM +F+  GD K VQKLFSMVRQ+G EP
Sbjct: 498 TLTKCGRNSNTLDMLDEMILNGICPDIQTFSGLMQYFSQLGDIKTVQKLFSMVRQSGFEP 557

Query: 549 DAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVE 596
           DAY++KVLI+ YCK             + NS  MPD+ATKELL KSLWKEGRR+EAAAVE
Sbjct: 558 DAYLYKVLIEGYCKSTRAALAWRLFEDMKNSGSMPDSATKELLVKSLWKEGRRREAAAVE 617

Query: 597 ERCEKINDVPSLALRGHIWAVSSADLTRVHSIYRNSITS 635
           E CE++N V  L L GH+W VSSADLTRV++IY NS  S
Sbjct: 618 ESCEEVNVVLPLGLPGHVWTVSSADLTRVYNIYSNSFVS 656


>gi|186532821|ref|NP_001119513.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635653|sp|B3H4P1.1|PP450_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66631
 gi|332010859|gb|AED98242.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 661

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/643 (58%), Positives = 474/643 (73%), Gaps = 25/643 (3%)

Query: 20  QTRSFVRAPFTNKLALYLRRAQLIDSIRLAVRS--NSSNSLSSLLNDRLLDPFIVTHALR 77
           Q R F R PF NK+  YL RA LIDSIRL++RS   S  +L+SLLN RLLD F+V +ALR
Sbjct: 20  QIRFFSRDPFPNKVQHYLYRANLIDSIRLSLRSPTTSDRTLASLLNHRLLDSFVVKNALR 79

Query: 78  SAPNADSALSIMEALK-SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNV 136
           S+P+  SA SI + L   +P FS    TLHA ATVLAK QR+ EL +LIG +++ KF NV
Sbjct: 80  SSPSVSSAWSIFKTLSHKSPRFSFETETLHAFATVLAKFQRSSELNSLIGVVNAWKFRNV 139

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYR--QRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
             +FMNL+  Y+T+GD + VL TW+EYR     K   TESYNIVM VY   GK+ EAV+T
Sbjct: 140 HFSFMNLLNLYATAGDFDSVLKTWDEYRCSGEEKKGCTESYNIVMQVYMTLGKDSEAVQT 199

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
           F Q+I+EG IPNSRT+T+MIEHLV LG LD+A+++F  LPLMRI RT K Y +LVE FV 
Sbjct: 200 FDQIINEGGIPNSRTFTIMIEHLVKLGNLDAAMKIFETLPLMRITRTLKHYSVLVEAFVD 259

Query: 255 VERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
            +RFDE K+L+ EM+ DGKFP R M   L+RM+E GF     EFLREMLPD+RIK++  Y
Sbjct: 260 AQRFDEVKTLIAEMKSDGKFPSRRMLEPLKRMREAGFEHETEEFLREMLPDERIKDISMY 319

Query: 315 E-DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTT 373
             D   D EDE D+    V  A  V+LKPWLDPKALA +L +WS + V+ L +A FVWT 
Sbjct: 320 SMDNPSDSEDEGDEYKDDVNEA-QVKLKPWLDPKALATSLKKWSSDAVTALEEANFVWTN 378

Query: 374 RLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
            LVCK+LR+F++PETAW FFCWVA QPG+THD Y +E+M+ +LAR+G VELVD+LI+K+R
Sbjct: 379 LLVCKMLRNFRAPETAWSFFCWVAIQPGFTHDAYTIERMMAMLARNGQVELVDKLISKVR 438

Query: 434 SDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKC 493
            +G++LPFSTIRLIID YGISKK +AA+K F++DRTLCG IS F LMLLYSSLLRTLTKC
Sbjct: 439 IEGIKLPFSTIRLIIDLYGISKKPEAAIKVFNEDRTLCGSISDFNLMLLYSSLLRTLTKC 498

Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
           KR+ +A+  LE+M+ +G+ PD+QTFSGLMYHFALQG+ + V++LFSMVRQ G+EPD YM 
Sbjct: 499 KRNAEALETLEDMMLTGVSPDIQTFSGLMYHFALQGEIQTVERLFSMVRQIGLEPDPYML 558

Query: 554 KVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEK 601
           K+L+QAYC+             + +SNLMPD  TKELL KSLW+E +RKEAAAVEE  E+
Sbjct: 559 KLLVQAYCRCERSVLAYRVFQDMKDSNLMPDRETKELLVKSLWREEKRKEAAAVEESYEE 618

Query: 602 IND------VPSLALRGHIWAVSSADLTRVHSIYRNSITSIVT 638
            ND      V  LAL+GH+W +SS D++RV+++YR+ +    T
Sbjct: 619 ENDNKNSSNVLRLALKGHVWTISSTDISRVYNLYRDCVLKTST 661


>gi|297797729|ref|XP_002866749.1| hypothetical protein ARALYDRAFT_920064 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312584|gb|EFH43008.1| hypothetical protein ARALYDRAFT_920064 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 661

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/662 (56%), Positives = 476/662 (71%), Gaps = 25/662 (3%)

Query: 1   MFSKRFLPAVILSKAFTQLQTRSFVRAPFTNKLALYLRRAQLIDSIRLAVRSNSSN--SL 58
           MFS  F   V    +    Q R F R PF NK+  YL RA LIDSIRL++RS +++  +L
Sbjct: 1   MFSLIFSNPVKPFNSVIIYQIRFFSRDPFPNKVQHYLYRANLIDSIRLSLRSTTTSDPTL 60

Query: 59  SSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSN-PNFSHNQSTLHALATVLAKSQR 117
            SLL+ RLLD F+V +ALRS+P+  SA SI + L+   P+FS    TLHA ATVLAK QR
Sbjct: 61  PSLLDHRLLDSFVVKNALRSSPSVASAWSIFKTLRGKKPHFSFETETLHAFATVLAKFQR 120

Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA--KLLSTESY 175
           + EL +LIG +++ KF  V  +FMNLM  Y+T+GD + VL TW+EYR     K   TESY
Sbjct: 121 SSELNSLIGLVNAGKFGQVHFSFMNLMNLYATAGDFDSVLKTWDEYRCSGEEKKGCTESY 180

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           NIVM VY   GK+ EAV+TF Q+ ++G IPNSRT+T+MIEHLV LG LD+A++VF  LPL
Sbjct: 181 NIVMQVYMTLGKDSEAVQTFDQITNQGGIPNSRTFTIMIEHLVKLGNLDAAMKVFETLPL 240

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGA 295
           MRI RT K Y +LVE FV  +RF E K+LL EM+ DGKFP R M   L+ M+E GF Q  
Sbjct: 241 MRITRTLKHYSVLVEAFVNAQRFGEVKTLLAEMKADGKFPSRRMLEPLKLMREAGFEQET 300

Query: 296 NEFLREMLPDKRIKNVRYYE-DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLD 354
            EFLREMLPD+RIK++  Y  D   D E+E D++N  V     V+LKPWLDPKALA +L 
Sbjct: 301 EEFLREMLPDERIKDISIYSMDNPSDSEEEGDEHNDNVNEG-QVKLKPWLDPKALATSLK 359

Query: 355 EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT 414
           +WS + V+ L +A FVWT  LVCK+LR+F+SPETAW FFCWVA QPG+THD Y +E+M+ 
Sbjct: 360 KWSSDAVTALEEANFVWTNLLVCKMLRNFRSPETAWSFFCWVAIQPGFTHDAYTIERMMA 419

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI 474
           +LAR+G VELVD+LI+K+R +G++LPFSTIRLIID YGISKK DAA+K F  DRTLCG I
Sbjct: 420 MLARNGQVELVDKLISKVRMEGIKLPFSTIRLIIDLYGISKKPDAAIKVFRQDRTLCGSI 479

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
           S F LMLLYSSLLRTLTKCKR+ +A+  LE+MI +G+ PD+QTFSGLMYHFALQG+ + V
Sbjct: 480 SDFNLMLLYSSLLRTLTKCKRNAEALETLEDMILTGVSPDIQTFSGLMYHFALQGEIQTV 539

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKS 582
           ++LFSMVRQ G++PD YM K+L+QAYC+             + +SNLMPD  TKELL KS
Sbjct: 540 ERLFSMVRQIGLDPDPYMLKLLVQAYCRCERSVLAYRVFQDMKDSNLMPDKETKELLVKS 599

Query: 583 LWKEGRRKEAAAV------EERCEKINDVPSLALRGHIWAVSSADLTRVHSIYRNSITSI 636
           LW+E +RKEAAAV      E   +  ++V  LAL+GH+W +SS D++RV+++YR+ +   
Sbjct: 600 LWREEKRKEAAAVEESYEEENNNKNSSNVLRLALKGHVWTISSTDISRVYNLYRDCVLKT 659

Query: 637 VT 638
            T
Sbjct: 660 ST 661


>gi|224133926|ref|XP_002327713.1| predicted protein [Populus trichocarpa]
 gi|222836798|gb|EEE75191.1| predicted protein [Populus trichocarpa]
          Length = 517

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/510 (65%), Positives = 398/510 (78%), Gaps = 21/510 (4%)

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
           MQWY+ +GDLE VL  W +YR   K + TESYNIVM +YA+ G++ EAV  F ++I EGA
Sbjct: 1   MQWYAATGDLEAVLDVWKQYRNGDKRVCTESYNIVMGLYAQKGRDCEAVRVFYRMIHEGA 60

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
           IPNSRTYTVMIEHLVN GKLD A+E+FS LPLMRIKRT KQYL+LVEGFVG+ERFD  ++
Sbjct: 61  IPNSRTYTVMIEHLVNSGKLDPAIEIFSVLPLMRIKRTLKQYLVLVEGFVGLERFDGVRT 120

Query: 264 LLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDED 323
           LL+EMR DGKFPGRAMR AL+ +QE GF++   EFL+EM PD+RIK++    D S D + 
Sbjct: 121 LLDEMRADGKFPGRAMRKALQCLQEAGFVEETEEFLKEMFPDERIKSISNSGDISFDKDG 180

Query: 324 ENDDN-------NSGVRIA--YGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTR 374
           + D +       N G   A    V+LKPWLDP+ALA  L++WSP+VVS L DAKFVWTTR
Sbjct: 181 DEDGDEDEDEDENHGCAFADIQEVRLKPWLDPRALAKALNKWSPDVVSALEDAKFVWTTR 240

Query: 375 LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
           LV KVLR+  SPETAW FFCWVAYQPG+TH VY +++M+T+LA+HG VELVD+LI K+RS
Sbjct: 241 LVWKVLRNINSPETAWDFFCWVAYQPGFTHCVYTVQRMMTLLAKHGKVELVDQLINKIRS 300

Query: 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCK 494
           +GMRLPFSTIRLIIDF GISK ADAALK F +DR LCGPI+K+ LMLLYSSL+RTLTKCK
Sbjct: 301 EGMRLPFSTIRLIIDFCGISKNADAALKVFREDRALCGPITKYNLMLLYSSLIRTLTKCK 360

Query: 495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK 554
           RD DAI+VLEEMI  GI PD+QTFSGLMYHFA QGD K VQKL ++VRQ+ VEPDAYM+K
Sbjct: 361 RDSDAIDVLEEMILCGICPDIQTFSGLMYHFASQGDIKTVQKLLTIVRQSDVEPDAYMYK 420

Query: 555 VLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKI 602
           VLIQAYCK             + NSNL+PDAATK+LL KSLWKEG+ KEAA VEE C+ I
Sbjct: 421 VLIQAYCKCDRAALAWRIFEDMKNSNLIPDAATKDLLVKSLWKEGKLKEAATVEESCDGI 480

Query: 603 NDVPSLALRGHIWAVSSADLTRVHSIYRNS 632
           N V  L   GH W VSSADL +++++Y NS
Sbjct: 481 NSVLPLKQHGHKWTVSSADLAKIYNLYSNS 510



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/248 (16%), Positives = 108/248 (43%), Gaps = 11/248 (4%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           +V   LR+  + ++A      +   P F+H   T+  + T+LAK  +   +  LI  I S
Sbjct: 241 LVWKVLRNINSPETAWDFFCWVAYQPGFTHCVYTVQRMMTLLAKHGKVELVDQLINKIRS 300

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTES----YNIVMSVYAKTG 186
                       ++ +   S + +  L  + E R     ++  +    Y+ ++    K  
Sbjct: 301 EGMRLPFSTIRLIIDFCGISKNADAALKVFREDRALCGPITKYNLMLLYSSLIRTLTKCK 360

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
           ++ +A++   ++I  G  P+ +T++ ++ H  + G + +  ++ + +    ++  +  Y 
Sbjct: 361 RDSDAIDVLEEMILCGICPDIQTFSGLMYHFASQGDIKTVQKLLTIVRQSDVEPDAYMYK 420

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-------ERMQEMGFIQGANEFL 299
           +L++ +   +R   A  +  +M++    P  A +  L        +++E   ++ + + +
Sbjct: 421 VLIQAYCKCDRAALAWRIFEDMKNSNLIPDAATKDLLVKSLWKEGKLKEAATVEESCDGI 480

Query: 300 REMLPDKR 307
             +LP K+
Sbjct: 481 NSVLPLKQ 488


>gi|308081032|ref|NP_001183205.1| hypothetical protein [Zea mays]
 gi|238010036|gb|ACR36053.1| unknown [Zea mays]
 gi|414876173|tpg|DAA53304.1| TPA: hypothetical protein ZEAMMB73_741646 [Zea mays]
          Length = 629

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 276/631 (43%), Positives = 390/631 (61%), Gaps = 41/631 (6%)

Query: 27  APFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSAL 86
           AP TN++ALYLRRA+LIDS+R+ +RS+S +S  +L  D   DP +  HA+R+AP A  AL
Sbjct: 6   APATNRVALYLRRARLIDSLRVRLRSSSPSSPPALPPD---DPVVALHAIRAAPTASCAL 62

Query: 87  SIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQW 146
           S+  A+ S            ALA  L+      +L+  +            +  +     
Sbjct: 63  SLFRAIPSQ--PPPPLPLYQALAARLSSLAALSDLRAHLASFPLPAPPLARLRLL----- 115

Query: 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206
            + +GD    L  +       +    E++N+V+ ++A+ G +  AVE FR+++ EGA+PN
Sbjct: 116 -AAAGDRASALEAFGSLPATPRR-PAEAHNVVIELHARGGDHDAAVEAFRRMVREGALPN 173

Query: 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
           +RTYTV+I HL + G +D ALEVF  LP +R++RT++QY +L E      RFD+ + L+ 
Sbjct: 174 ARTYTVVIAHLASAGFVDQALEVFRILPSLRVRRTTRQYNVLAEALASGGRFDQLRWLVR 233

Query: 267 EMRD-DGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRI---------KNVRYYED 316
           EM   DG  PG  MR A+  ++E G + G  +F+ E+ P+ RI         +     ED
Sbjct: 234 EMAAVDGVMPGPQMRAAIAALREAGHVDGTKDFVEELSPNARIGYAVDDVEGEGDGEEED 293

Query: 317 GSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLV 376
             D+DE E  D  +G +      LKPWLDP+ LA  LD W    V+ L  A  VWT RLV
Sbjct: 294 DDDEDEGEVKDRGNGEK----QTLKPWLDPRELARALDGWDSREVAELEGAGLVWTPRLV 349

Query: 377 CKVLRHFKSPETAWHFFCWVAYQPG-YTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           CK+LR FK  ETAW FFCWVA +PG + HD + + +M+ ILAR GHVELV+RL+AK+R+D
Sbjct: 350 CKLLRAFKKAETAWEFFCWVACRPGGFAHDRHTVARMMAILARTGHVELVERLLAKVRAD 409

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR 495
           G+ LP +T+RL+IDFYG+SKKADAA++ F +  ++CGPIS   L LLYSSLLRT+TKC+R
Sbjct: 410 GILLPLATVRLVIDFYGLSKKADAAVRVFQEAESICGPISGPNLALLYSSLLRTMTKCRR 469

Query: 496 DFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV 555
             DA+++LEEM+  G++PD+QTFSGLM H A  GD K V +L  +VRQ  ++PD YM+ V
Sbjct: 470 GPDAMDLLEEMMARGVLPDLQTFSGLMEHLAGAGDLKGVHRLLGLVRQCELQPDGYMYSV 529

Query: 556 LIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIN 603
           L++AYCK             +  + + PDA TK LL KSLW+EG+ +EAA VEERC  + 
Sbjct: 530 LVRAYCKRERAALALRVFDEMRAAGVTPDAPTKALLVKSLWREGKLREAALVEERCNDVV 589

Query: 604 D-VPSLALRGHIWAVSSADLTRVHSIYRNSI 633
           D +P ++  GH+W  S+ADL +V  IY   +
Sbjct: 590 DGLPDVS-PGHVWTASAADLKKVLDIYSGCL 619


>gi|242051953|ref|XP_002455122.1| hypothetical protein SORBIDRAFT_03g004720 [Sorghum bicolor]
 gi|241927097|gb|EES00242.1| hypothetical protein SORBIDRAFT_03g004720 [Sorghum bicolor]
          Length = 652

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 274/628 (43%), Positives = 385/628 (61%), Gaps = 42/628 (6%)

Query: 30  TNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIM 89
           TN++ALYLRRA+LIDS+R+ +RS+S +S   L  D  +      HA+R+AP    ALS+ 
Sbjct: 35  TNRVALYLRRARLIDSLRVRLRSSSPSSPPPLPLDDPVVAL---HAIRAAPTPSCALSLF 91

Query: 90  EALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYST 149
            AL S           HALA+ LA      +L+  +            +  +      + 
Sbjct: 92  RALPSQ--PPPPLPLYHALASRLASLAALPDLRVHLASFPLPAPPLARLRLL------AA 143

Query: 150 SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRT 209
           +GD    L  +      A     E++N+V+ ++A+ G++  AVE FR+++ EGA+PN+RT
Sbjct: 144 AGDRASALEAFGSL-PAAPRRPAEAHNVVIELHARDGEHDAAVEAFRRMVREGALPNART 202

Query: 210 YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
           YTV+I HL + G +D ALEVF  LP +R++RT++QY +L E      RFD+ + L+ EM 
Sbjct: 203 YTVVIAHLASAGFVDQALEVFRILPSLRVRRTTRQYNVLAEALASTGRFDQLRWLVREMA 262

Query: 270 D-DGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDG--------SDD 320
             DG  PG  MR A+  M+E G I G  +F+ E+ P+ RI    Y  D          +D
Sbjct: 263 AVDGVMPGPQMRAAIAAMREDGHIDGTEDFVEELSPNARIG---YAVDDVEGEGDSEEED 319

Query: 321 DEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVL 380
           ++ E  D ++G +      LKPWLDP+ LA  LD W    V+ L  A  VWT RLVCK+L
Sbjct: 320 EQGEEKDRSNGEK----QTLKPWLDPRELARALDGWDSREVAELEGAGIVWTPRLVCKLL 375

Query: 381 RHFKSPETAWHFFCWVAYQPG--YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR 438
           R FK  ETAW FFCWVA +PG  + HD + + +M+ ILAR GHVELV+RL+AK+R+DG+ 
Sbjct: 376 RAFKKAETAWEFFCWVACRPGSGFAHDRHTVARMVAILARTGHVELVERLLAKVRADGIL 435

Query: 439 LPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD 498
           LP +T+RL+IDFYG+SKKADAA++ F + +++CGPIS+  L LL SSLLRT+TKC+R  D
Sbjct: 436 LPLATVRLVIDFYGLSKKADAAVRVFREAKSICGPISRPNLALLCSSLLRTMTKCRRGLD 495

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A+++LEEM+  G++PD+QTFSGLM H A   D K V +L  +VRQ  ++PD YM+ VL++
Sbjct: 496 AMDLLEEMMARGVLPDLQTFSGLMEHLASACDLKGVHRLLGLVRQCELQPDGYMYSVLVR 555

Query: 559 AYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
           AYCK             +  + + PDA TK LL KSLW+EG+ +EAA VEERCE++    
Sbjct: 556 AYCKRERAALALRVFDEMRAAGVAPDAPTKALLVKSLWREGKLREAALVEERCEEVAGGL 615

Query: 607 SLALRGHIWAVSSADLTRVHSIYRNSIT 634
             A  GH+W  SSADL +V  IY   + 
Sbjct: 616 PEASPGHVWTASSADLKKVLDIYSGCLA 643


>gi|326534218|dbj|BAJ89459.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 266/627 (42%), Positives = 373/627 (59%), Gaps = 49/627 (7%)

Query: 28  PFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALS 87
           P  +++  YLRRA+LIDS+RL +RS SS       +       +  H +R+AP   +ALS
Sbjct: 3   PPGSRVVTYLRRARLIDSLRLRLRSPSSLPPPPPDDP-----VVALHGIRAAPTPAAALS 57

Query: 88  IMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWY 147
              AL S           HALA+ LA      +L++L+     S    V +  +      
Sbjct: 58  FFRALPSPAPLP----LFHALASRLANPASLPDLRSLLASFPLSPPPLVRLRLL------ 107

Query: 148 STSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNS 207
           + +GD    L+ +            E++++V+S++A  G +  AV+ F  ++ EGA+PN+
Sbjct: 108 AAAGDHPAALAAFASIPTTPHR-PAEAHSLVISLHAGAGDHAAAVDAFGAMVREGALPNA 166

Query: 208 RTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNE 267
           RTYTV++ HL   G +D ALEVF  LP +RI+RT++QY +L E      RFD+ + L+ E
Sbjct: 167 RTYTVVVSHLAGAGFVDQALEVFRLLPSLRIRRTTRQYNVLAEALAEAGRFDQLRWLVRE 226

Query: 268 MRD-DGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGS-------D 319
           M   DG  PG   R A+  M+E G  +G  +F+ E+ PD RI     Y  G        +
Sbjct: 227 MAAVDGVMPGPQTRAAIAAMREAGHTEGTEDFVEELSPDARIP----YAVGDADGEGDSE 282

Query: 320 DDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKV 379
           ++ED   D   G        L+PWLDP+ LA  L+ W P+ V+ L  A  VWT RLVCK+
Sbjct: 283 EEEDGGKDTPRGKE----TPLRPWLDPRELARALEGWDPKEVAELEAAGIVWTPRLVCKL 338

Query: 380 LRHFKSPETAWHFFCWVAYQPG-YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR 438
           LR F+ PETAW FFCWVA +PG + HD   + +M  ILAR G VELV+RL+AK+R DG+ 
Sbjct: 339 LRSFRKPETAWEFFCWVACRPGGFAHDRDTVARMAAILARAGRVELVERLLAKVRDDGIL 398

Query: 439 LPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD 498
           LPF+T+RLI+DFYG+SKKADAA++ F D  ++CGP+S+  L LL SSLLRT+ KC+R  +
Sbjct: 399 LPFATVRLILDFYGLSKKADAAVRVFRDADSICGPVSRPNLALLCSSLLRTMAKCRRGRE 458

Query: 499 AINVLEEMIFS-GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           A  +LEEM+ + G++PD+QTFSGL+ H A  GD K V +LF MVRQ  + PD +M+ VLI
Sbjct: 459 ATELLEEMMATRGVLPDLQTFSGLIEHLAGAGDLKGVHRLFGMVRQCELRPDGHMYAVLI 518

Query: 558 QAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKI--- 602
           +AYCK             +  + + PDA TK LL KSLW+EG+ +EAA VEERCE++   
Sbjct: 519 RAYCKRERAALALKLFDEMRGAGVAPDAPTKALLVKSLWREGKLREAALVEERCEEMIAA 578

Query: 603 NDVPSLALRGHIWAVSSADLTRVHSIY 629
                 A  GH+W  S+ADL +V+ IY
Sbjct: 579 GGGLPGAASGHVWTASAADLNKVYGIY 605


>gi|13486670|dbj|BAB39907.1| P0028E10.11 [Oryza sativa Japonica Group]
          Length = 736

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 264/631 (41%), Positives = 372/631 (58%), Gaps = 42/631 (6%)

Query: 28  PFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALS 87
           P   ++ALYLRRA+LIDS+RL +RS SS       +D +    +  HA+R+AP   SA+S
Sbjct: 6   PSAARVALYLRRARLIDSLRLRLRSPSSPPPPPPPDDPV----VALHAIRAAPTPASAIS 61

Query: 88  IMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWY 147
           +  AL              ALA+ LA      +L++ +            +  +      
Sbjct: 62  VFRALPPP----QPLPLFQALASRLAAFAALPDLRSHLASFLLPPPPLARLRLLA----- 112

Query: 148 STSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNS 207
             +GD    L  +     +      E++N++M ++ +   +  AV  FR ++ EGA+PN+
Sbjct: 113 -AAGDHASALDAFASVPAKPHR-PAEAHNLLMGLHVRAADHAAAVGAFRAMVREGALPNA 170

Query: 208 RTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNE 267
           RTYTV+IEHL + G +D A+EVF  LP +R +RT++QY +L E      +FD+ + L+ E
Sbjct: 171 RTYTVVIEHLASAGFVDQAVEVFRLLPSLRARRTTRQYNVLAEALASAGKFDQLRWLVRE 230

Query: 268 MRD-DGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDEND 326
           M   DG  PG  MR A+  M+E G  +G  +F+ E+ P++RI    Y  D  D + D +D
Sbjct: 231 MVAVDGVMPGPQMRAAIAAMREAGHAEGTEDFVEELSPNERIG---YAVDDVDGEGDSDD 287

Query: 327 DNNSGVRIAYG---------VQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVC 377
           +   G                 LKPWLDP+ LA  L+ W P  V+ L  A  VWT RLVC
Sbjct: 288 EEEEGDDDDGVDGRDKGRGRATLKPWLDPRELARALEGWEPREVAELEAAGIVWTPRLVC 347

Query: 378 KVLRHFKSPETAWHFFCWVAYQPG-YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
           K+LR FK  ETAW FFCWVA +PG Y HD + + +M+ ILAR GHVELV+RL+ K+R+DG
Sbjct: 348 KLLRAFKKAETAWEFFCWVACRPGGYAHDRHTVARMVAILARAGHVELVERLLGKVRADG 407

Query: 437 MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
           + LPF+T+RL++DFYG+SKKADAA++ F +  ++CG +S+  L LL SSLLRTL KC+R 
Sbjct: 408 IVLPFATVRLVVDFYGLSKKADAAIRVFREADSICGAVSRPNLALLCSSLLRTLAKCRRA 467

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
            DA+ +LEEM+  G++PD+QTFSGLM H A  G+ K V +L  +VRQ  ++PD YM+ VL
Sbjct: 468 ADAMELLEEMMSRGVLPDLQTFSGLMEHLAGAGELKGVHRLLGLVRQCELQPDGYMYSVL 527

Query: 557 IQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEK-IN 603
           I+ YCK             +  + + PDA TK LL KSLW+EG+ +EAA VEERCE+   
Sbjct: 528 IKVYCKKERAALALKLFDEMRGAGVAPDAPTKALLVKSLWREGKLREAAQVEERCEEAAG 587

Query: 604 DVPSLALRGHIWAVSSADLTRVHSIYRNSIT 634
           D    A  GH+W  S+ADL +V  IY    T
Sbjct: 588 DGLPEASPGHVWTASAADLKKVSDIYYGCFT 618


>gi|297719671|ref|NP_001172197.1| Os01g0167750 [Oryza sativa Japonica Group]
 gi|55296867|dbj|BAD68304.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|55297506|dbj|BAD68308.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|255672907|dbj|BAH90927.1| Os01g0167750 [Oryza sativa Japonica Group]
          Length = 628

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 264/631 (41%), Positives = 372/631 (58%), Gaps = 42/631 (6%)

Query: 28  PFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALS 87
           P   ++ALYLRRA+LIDS+RL +RS SS       +D +    +  HA+R+AP   SA+S
Sbjct: 6   PSAARVALYLRRARLIDSLRLRLRSPSSPPPPPPPDDPV----VALHAIRAAPTPASAIS 61

Query: 88  IMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWY 147
           +  AL              ALA+ LA      +L++ +            +  +      
Sbjct: 62  VFRALPPP----QPLPLFQALASRLAAFAALPDLRSHLASFLLPPPPLARLRLLA----- 112

Query: 148 STSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNS 207
             +GD    L  +     +      E++N++M ++ +   +  AV  FR ++ EGA+PN+
Sbjct: 113 -AAGDHASALDAFASVPAKPHR-PAEAHNLLMGLHVRAADHAAAVGAFRAMVREGALPNA 170

Query: 208 RTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNE 267
           RTYTV+IEHL + G +D A+EVF  LP +R +RT++QY +L E      +FD+ + L+ E
Sbjct: 171 RTYTVVIEHLASAGFVDQAVEVFRLLPSLRARRTTRQYNVLAEALASAGKFDQLRWLVRE 230

Query: 268 MRD-DGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDEND 326
           M   DG  PG  MR A+  M+E G  +G  +F+ E+ P++RI    Y  D  D + D +D
Sbjct: 231 MVAVDGVMPGPQMRAAIAAMREAGHAEGTEDFVEELSPNERIG---YAVDDVDGEGDSDD 287

Query: 327 DNNSGVRIAYG---------VQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVC 377
           +   G                 LKPWLDP+ LA  L+ W P  V+ L  A  VWT RLVC
Sbjct: 288 EEEEGDDDDGVDGRDKGRGRATLKPWLDPRELARALEGWEPREVAELEAAGIVWTPRLVC 347

Query: 378 KVLRHFKSPETAWHFFCWVAYQPG-YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
           K+LR FK  ETAW FFCWVA +PG Y HD + + +M+ ILAR GHVELV+RL+ K+R+DG
Sbjct: 348 KLLRAFKKAETAWEFFCWVACRPGGYAHDRHTVARMVAILARAGHVELVERLLGKVRADG 407

Query: 437 MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
           + LPF+T+RL++DFYG+SKKADAA++ F +  ++CG +S+  L LL SSLLRTL KC+R 
Sbjct: 408 IVLPFATVRLVVDFYGLSKKADAAIRVFREADSICGAVSRPNLALLCSSLLRTLAKCRRA 467

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
            DA+ +LEEM+  G++PD+QTFSGLM H A  G+ K V +L  +VRQ  ++PD YM+ VL
Sbjct: 468 ADAMELLEEMMSRGVLPDLQTFSGLMEHLAGAGELKGVHRLLGLVRQCELQPDGYMYSVL 527

Query: 557 IQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEK-IN 603
           I+ YCK             +  + + PDA TK LL KSLW+EG+ +EAA VEERCE+   
Sbjct: 528 IKVYCKKERAALALKLFDEMRGAGVAPDAPTKALLVKSLWREGKLREAAQVEERCEEAAG 587

Query: 604 DVPSLALRGHIWAVSSADLTRVHSIYRNSIT 634
           D    A  GH+W  S+ADL +V  IY    T
Sbjct: 588 DGLPEASPGHVWTASAADLKKVSDIYYGCFT 618


>gi|125524572|gb|EAY72686.1| hypothetical protein OsI_00553 [Oryza sativa Indica Group]
          Length = 628

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 264/631 (41%), Positives = 372/631 (58%), Gaps = 42/631 (6%)

Query: 28  PFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALS 87
           P   ++ALYLRRA+LIDS+RL +RS SS       +D +    +  HA+R+AP   SA+S
Sbjct: 6   PSAARVALYLRRARLIDSLRLRLRSPSSPPPPPPPDDPV----VALHAIRAAPTPASAIS 61

Query: 88  IMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWY 147
           +  AL               LA+ LA      +L++ +            +  +      
Sbjct: 62  VFRALPPP----QPLPLFQVLASRLAAFAALPDLRSHLASFPLPPPPLARLRLLA----- 112

Query: 148 STSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNS 207
             +GD    L  +     +      E++N++M ++ +   +  AV  FR ++ EGA+PN+
Sbjct: 113 -AAGDHASALDAFASVPAKPHR-PAEAHNLLMGLHVRAADHAAAVGAFRAMVREGALPNA 170

Query: 208 RTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNE 267
           RTYTV+IEHL + G +D A+EVF  LP +R +RT++QY +L E      +FD+ + L+ E
Sbjct: 171 RTYTVVIEHLASAGFVDQAVEVFRLLPSLRARRTTRQYNVLAEALASAGKFDQLRWLVRE 230

Query: 268 MRD-DGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDEND 326
           M   DG  PG  MR A+  M+E G  +G  +F+ E+ P++RI    Y  D  D + D +D
Sbjct: 231 MVAVDGVMPGPQMRAAIAAMREAGHAEGTEDFVEELSPNERIG---YAVDDVDGEGDSDD 287

Query: 327 DNNSGVRIAYG---------VQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVC 377
           +   G                 LKPWLDP+ LA  L+ W P  V+ L  A  VWT RLVC
Sbjct: 288 EEEEGDDDDGVDGRDKGRGRATLKPWLDPRELARALEGWEPREVAELEAAGIVWTPRLVC 347

Query: 378 KVLRHFKSPETAWHFFCWVAYQPG-YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
           K+LR FK  ETAW FFCWVA +PG Y HD + + +M+ ILAR GHVELV+RL+ K+R+DG
Sbjct: 348 KLLRAFKKAETAWEFFCWVACRPGGYAHDRHTVARMVAILARAGHVELVERLLGKVRADG 407

Query: 437 MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
           + LPF+T+RL++DFYG+SKKADAA++ F +  ++CG +S+  L LL SSLLRTL KC+R 
Sbjct: 408 IVLPFATVRLVVDFYGLSKKADAAIRVFREADSICGAVSRPNLALLCSSLLRTLAKCRRA 467

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
            DA+ +LEEM+  G++PD+QTFSGLM H A  G+ K V +L  +VRQ  ++PD YM+ VL
Sbjct: 468 ADAMELLEEMMSRGVLPDLQTFSGLMEHLAGAGELKGVHRLLGLVRQCELQPDGYMYSVL 527

Query: 557 IQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEK-IN 603
           I+AYCK             +  + + PDA TK LL KSLW+EG+ +EAA VEERCE+   
Sbjct: 528 IKAYCKKERAALALKLFDEMRGAGVAPDAPTKALLVKSLWREGKLREAAQVEERCEEAAG 587

Query: 604 DVPSLALRGHIWAVSSADLTRVHSIYRNSIT 634
           D    A  GH+W  S+ADL +V  IY    T
Sbjct: 588 DGLPEASPGHVWTASAADLKKVSDIYYGCFT 618


>gi|125569173|gb|EAZ10688.1| hypothetical protein OsJ_00518 [Oryza sativa Japonica Group]
          Length = 644

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 238/578 (41%), Positives = 339/578 (58%), Gaps = 41/578 (7%)

Query: 28  PFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALS 87
           P   ++ALYLRRA+LIDS+RL +RS SS       +D +    +  HA+R+AP   SA+S
Sbjct: 6   PSAARVALYLRRARLIDSLRLRLRSPSSPPPPPPPDDPV----VALHAIRAAPTPASAIS 61

Query: 88  IMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWY 147
           +  AL              ALA+ LA      +L++ +            +  +      
Sbjct: 62  VFRALPPP----QPLPLFQALASRLAAFAALPDLRSHLASFLLPPPPLARLRLLA----- 112

Query: 148 STSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNS 207
             +GD    L  +     +      E++N++M ++ +   +  AV  FR ++ EGA+PN+
Sbjct: 113 -AAGDHASALDAFASVPAKPHR-PAEAHNLLMGLHVRAADHAAAVGAFRAMVREGALPNA 170

Query: 208 RTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNE 267
           RTYTV+IEHL + G +D A+EVF  LP +R +RT++QY +L E      +FD+ + L+ E
Sbjct: 171 RTYTVVIEHLASAGFVDQAVEVFRLLPSLRARRTTRQYNVLAEALASAGKFDQLRWLVRE 230

Query: 268 MRD-DGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDEND 326
           M   DG  PG  MR A+  M+E G  +G  +F+ E+ P++RI    Y  D  D + D +D
Sbjct: 231 MVAVDGVMPGPQMRAAIAAMREAGHAEGTEDFVEELSPNERIG---YAVDDVDGEGDSDD 287

Query: 327 DNNSGVRIAYG---------VQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVC 377
           +   G                 LKPWLDP+ LA  L+ W P  V+ L  A  VWT RLVC
Sbjct: 288 EEEEGDDDDGVDGRDKGRGRATLKPWLDPRELARALEGWEPREVAELEAAGIVWTPRLVC 347

Query: 378 KVLRHFKSPETAWHFFCWVAYQPG-YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
           K+LR FK  ETAW FFCWVA +PG Y HD + + +M+ ILAR GHVELV+RL+ K+R+DG
Sbjct: 348 KLLRAFKKAETAWEFFCWVACRPGGYAHDRHTVARMVAILARAGHVELVERLLGKVRADG 407

Query: 437 MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
           + LPF+T+RL++DFYG+SKKADAA++ F +  ++CG +S+  L LL SSLLRTL KC+R 
Sbjct: 408 IVLPFATVRLVVDFYGLSKKADAAIRVFREADSICGAVSRPNLALLCSSLLRTLAKCRRA 467

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
            DA+ +LEEM+  G++PD+QTFSGLM H A  G+ K V +L  +VRQ  ++PD YM+ VL
Sbjct: 468 ADAMELLEEMMSRGVLPDLQTFSGLMEHLAGAGELKGVHRLLGLVRQCELQPDGYMYSVL 527

Query: 557 IQAYCKY------------LSNSNLMPDAATKELLKKS 582
           I+ YCK             +  + + PDA TK LL KS
Sbjct: 528 IKVYCKKERAALALKLFDEMRGAGVAPDAPTKALLVKS 565


>gi|357127429|ref|XP_003565383.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66631-like [Brachypodium distachyon]
          Length = 552

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 186/390 (47%), Positives = 250/390 (64%), Gaps = 31/390 (7%)

Query: 271 DGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNS 330
           DG  PG  +R A+  M+E G  +G  +F+ E+ PD RI    Y  D ++ +  +++    
Sbjct: 151 DGVLPGPQVRAAVAAMREAGHTEGTEDFVGELSPDARIP---YAVDDAEGEGRDSEGEEE 207

Query: 331 GVRI----AYGVQ--LKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFK 384
                   + G +  LKPWLDP+ LA  L+ W+PE V+ L  A  VWT RLVCK+LR FK
Sbjct: 208 EEDGDKDRSRGTKETLKPWLDPRELARALEGWAPEEVAELEAAGIVWTPRLVCKLLRAFK 267

Query: 385 SPETAWHFFCWVAYQPG---YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPF 441
              TAW FFCWVA  PG   + HD + + +M+TILAR GHV+LVDRL+AK+R+DG+ LPF
Sbjct: 268 KAATAWEFFCWVACHPGGGGFAHDRHTVARMVTILARAGHVDLVDRLLAKVRADGILLPF 327

Query: 442 STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAIN 501
           +T+ L++DFYG+SKK DAA++ F D   +CGPIS+  L LL SSLLRT+ KC+R  DA+ 
Sbjct: 328 ATVGLVLDFYGLSKKPDAAVRVFRDADAICGPISRPNLALLCSSLLRTMAKCRRGRDALV 387

Query: 502 VLEEMIFS--GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
           +LEEM+ +  G+VPD+QTFSGLM   A  GD   V +LF +VRQ  ++PDAYM+ VL++A
Sbjct: 388 LLEEMMAAERGVVPDLQTFSGLMQSLAGAGDLSGVHRLFGLVRQCELQPDAYMYCVLVRA 447

Query: 560 YCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKI----- 602
           YCK             +  + + PD  TK LL KSLWKEG+ +EAA VEERCE+I     
Sbjct: 448 YCKRERAALALKLFDEMRGAGVAPDVGTKALLVKSLWKEGKLREAALVEERCEEILAAGG 507

Query: 603 NDVPSLALRGHIWAVSSADLTRVHSIYRNS 632
            D    A  GH+W VS+ADL +V+ IY   
Sbjct: 508 KDGLPKAAPGHVWTVSAADLDKVYDIYSGC 537



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/216 (18%), Positives = 92/216 (42%), Gaps = 9/216 (4%)

Query: 69  PFIVTHALRSAPNADSALSIMEALKSNPN---FSHNQSTLHALATVLAKSQRNHELKTLI 125
           P +V   LR+   A +A      +  +P    F+H++ T+  + T+LA++     +  L+
Sbjct: 256 PRLVCKLLRAFKKAATAWEFFCWVACHPGGGGFAHDRHTVARMVTILARAGHVDLVDRLL 315

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS----V 181
             + +   L        ++ +Y  S   +  +  + +       +S  +  ++ S     
Sbjct: 316 AKVRADGILLPFATVGLVLDFYGLSKKPDAAVRVFRDADAICGPISRPNLALLCSSLLRT 375

Query: 182 YAKTGKNFEAVETFRQVI--DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIK 239
            AK  +  +A+    +++  + G +P+ +T++ +++ L   G L     +F  +    ++
Sbjct: 376 MAKCRRGRDALVLLEEMMAAERGVVPDLQTFSGLMQSLAGAGDLSGVHRLFGLVRQCELQ 435

Query: 240 RTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             +  Y +LV  +   ER   A  L +EMR  G  P
Sbjct: 436 PDAYMYCVLVRAYCKRERAALALKLFDEMRGAGVAP 471



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 7/99 (7%)

Query: 27  APFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSAL 86
           AP  +++A+YL RA+LIDS+RL +RS S     +   D  +   +  H +R AP   SAL
Sbjct: 2   APPGSRVAVYLHRARLIDSLRLRLRSPSPPPAPAPPPDDPV---VALHGIRCAPTPSSAL 58

Query: 87  SIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           S    L S           HALA+ LA      +L++L+
Sbjct: 59  SFFRTLPSPAPL----PLFHALASRLATPASLPDLRSLL 93


>gi|302776386|ref|XP_002971363.1| hypothetical protein SELMODRAFT_451140 [Selaginella moellendorffii]
 gi|300161345|gb|EFJ27961.1| hypothetical protein SELMODRAFT_451140 [Selaginella moellendorffii]
          Length = 745

 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 144/569 (25%), Positives = 260/569 (45%), Gaps = 41/569 (7%)

Query: 68  DPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD 127
           +P +V   LR     D+A    + LK    + H + T ++L  V  + +    ++ ++ D
Sbjct: 147 NPLVVLQVLRQPLEPDAAWGFFQWLKGVEGYRHTEHTYNSLIEVFGRVKDVTGIQKVLDD 206

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           +S+       V F  ++ WYS + D++  +  WN+  +   L +  +Y ++MS+  K  +
Sbjct: 207 MSAYGCGMNVVLFTTVIHWYSRADDIDRAVEMWNQMLKVGCLPNVVTYTMLMSLLTKLKR 266

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
             +  E F+ ++  G  PN RTYTV+I+ L + G LD+AL VF  L  ++   T+  + +
Sbjct: 267 FRQVGEIFKDMVSAGCRPNVRTYTVLIQCLASSGNLDAALLVFEKLDSLKASPTAATFRV 326

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREMLPDK 306
           L++        +  K L   M+   + P G+     ++ +++ G +  A   L  M  + 
Sbjct: 327 LMDSAASAGDLELLKGLFEGMKKANQKPNGKMYFTVMDSLKKAGKLTEAAPLLEAM--ES 384

Query: 307 RIKNVRYYED--------GSDDDEDENDDNNSGVRIAYGVQL----------KPWLDPKA 348
            I+  + Y D         S  +ED+   ++ G      V L          +P +D KA
Sbjct: 385 MIEADQLYADFQAKTPDQESTKEEDDRRGSSGGETKERSVPLQDMEVMEGLDRPLVDMKA 444

Query: 349 LANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYA 408
            +  +  W+PE  + L  A F W    V +VL   +    A  FF WV  QPGY HD + 
Sbjct: 445 FSTIIYRWTPETAAALEAANFRWDPWKVLRVLMGMRDVTAALRFFYWVEKQPGYKHDSFV 504

Query: 409 LEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR 468
             KM+++L RH H   V+ L+ KL+S  + +   T+  II    +S   D A+K F+  +
Sbjct: 505 YTKMISLLGRHHHFSQVEELLMKLQSSDIEVSIVTMNSIIFTLSVSHNPDLAMKIFYWMK 564

Query: 469 TL-CGPISKFKLMLLYSSLLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLMYHFA 526
            L   P ++      Y++++  L K  R FD A+ + +EM+ +G  PD  T++ L+    
Sbjct: 565 DLKVKPNTR-----TYTTVIDMLVKM-RHFDRAMAIYQEMLDAGCKPDAHTYTVLIQSLG 618

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAA 574
            +G     + L   +  NG +P+   +  LI +   Y            + +  +MP++ 
Sbjct: 619 REGKIDAAEHLLEKMPLNGCKPNVVNYTSLINSLIHYGRVSHALAVFKRMQDEGVMPNSI 678

Query: 575 TKELLKKSLWKEGRRKEAAAVEERCEKIN 603
           T  L+ K L +     +   VE++   I+
Sbjct: 679 TYSLMSKGLKRANMLHDLVEVEKKMATID 707



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 115/269 (42%), Gaps = 20/269 (7%)

Query: 349 LANTLDE--WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDV 406
           + N L E  W+ +    +   K  W   +V +VLR    P+ AW FF W+    GY H  
Sbjct: 122 VGNVLREMGWNEDSQVKVEKLKVPWNPLVVLQVLRQPLEPDAAWGFFQWLKGVEGYRHTE 181

Query: 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD 466
           +    ++ +  R   V  + +++  + + G  +       +I +Y  +   D A++ ++ 
Sbjct: 182 HTYNSLIEVFGRVKDVTGIQKVLDDMSAYGCGMNVVLFTTVIHWYSRADDIDRAVEMWNQ 241

Query: 467 D-RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF 525
             +  C P      ++ Y+ L+  LTK KR      + ++M+ +G  P+V+T++ L+   
Sbjct: 242 MLKVGCLPN-----VVTYTMLMSLLTKLKRFRQVGEIFKDMVSAGCRPNVRTYTVLIQCL 296

Query: 526 ALQGDEKIVQKLFSMVRQNGVEPDAYMFKV------------LIQAYCKYLSNSNLMPDA 573
           A  G+      +F  +      P A  F+V            L++   + +  +N  P+ 
Sbjct: 297 ASSGNLDAALLVFEKLDSLKASPTAATFRVLMDSAASAGDLELLKGLFEGMKKANQKPNG 356

Query: 574 ATKELLKKSLWKEGRRKEAAAVEERCEKI 602
                +  SL K G+  EAA + E  E +
Sbjct: 357 KMYFTVMDSLKKAGKLTEAAPLLEAMESM 385


>gi|225430854|ref|XP_002269078.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g01390-like [Vitis vinifera]
          Length = 519

 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 108/240 (45%), Gaps = 8/240 (3%)

Query: 68  DPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD 127
           D + V   L+S P  + A            F H+Q T   +  +  +++R   +  +   
Sbjct: 32  DSYTVNQVLKSHPPMEKAWLFFNWASRLKGFKHDQFTYTTMLDIFGEARRIESMNYVFQQ 91

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           +        +V + +LM W+S  GD+E  +  W E + +   L+  SY   M +     +
Sbjct: 92  MQEKGIKTDAVTYTSLMHWFSNDGDIERAVRVWKEMKAKGCCLTVVSYTAYMKILFDNKR 151

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
             EA + +++++  G  PN  TYTV++EHL   GK  +ALE+FS +    ++       I
Sbjct: 152 VKEAADVYKEMLQSGCAPNCYTYTVLMEHLTGSGKYKAALEIFSRMQEAGVQPDKATCNI 211

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDG---KFPGRAMRVALERMQEMGFIQGANEFLREMLP 304
           L+E F    +      +L  M+D+    ++P     V LE +Q +     ++  LR++ P
Sbjct: 212 LIEKFCKTGQTWAITQILLYMKDNFLVLRYP-----VYLEALQTLKVAGESDILLRQVNP 266



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 96/192 (50%), Gaps = 4/192 (2%)

Query: 371 WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIA 430
           W +  V +VL+     E AW FF W +   G+ HD +    ML I      +E ++ +  
Sbjct: 31  WDSYTVNQVLKSHPPMEKAWLFFNWASRLKGFKHDQFTYTTMLDIFGEARRIESMNYVFQ 90

Query: 431 KLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTL 490
           +++  G++    T   ++ ++      + A++ + + +     ++    ++ Y++ ++ L
Sbjct: 91  QMQEKGIKTDAVTYTSLMHWFSNDGDIERAVRVWKEMKAKGCCLT----VVSYTAYMKIL 146

Query: 491 TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA 550
              KR  +A +V +EM+ SG  P+  T++ LM H    G  K   ++FS +++ GV+PD 
Sbjct: 147 FDNKRVKEAADVYKEMLQSGCAPNCYTYTVLMEHLTGSGKYKAALEIFSRMQEAGVQPDK 206

Query: 551 YMFKVLIQAYCK 562
               +LI+ +CK
Sbjct: 207 ATCNILIEKFCK 218


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 121/512 (23%), Positives = 198/512 (38%), Gaps = 57/512 (11%)

Query: 111 VLAKSQRN--HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAK 168
           ++   Q N   E + L+  +  S     +V +  L+        LE V     E  +  +
Sbjct: 169 IVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGR 228

Query: 169 LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALE 228
              T SYN V++   ++GK  EA +   ++I++   P+  TY  +++    + K+D A  
Sbjct: 229 EPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAER 288

Query: 229 VFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQ 287
           +   +   R   T   Y  L+ GF   +R  +A  ++ +M   G  P        L+ + 
Sbjct: 289 LLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLC 348

Query: 288 EMGFIQGANEFLREMLPDKRIKNVRYY--------EDGSDDDEDENDDNNSGVRIAYGVQ 339
           + G ++ A+E L  M+      +V  Y        + G  DD           R+   + 
Sbjct: 349 KAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDD----------ARLLLEMM 398

Query: 340 LKPWLDPKAL-----------ANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPET 388
           L+    P  +           A  +DE   +V+ L+ +            ++  +     
Sbjct: 399 LERGCQPNLVTFNTMIDGFCKAGKVDEGH-KVLELMKEVSCTPDVVTYSTLIDGYCKANR 457

Query: 389 AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII 448
               F  +   P    D  +   ML  L   G VE    ++  +   G     S   LII
Sbjct: 458 MQDAFAILGISP----DKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALII 513

Query: 449 DFYGISKKADAALKAFH--DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
                 ++ D ALK      +R  C P      +  YS L+  L K KR  DAINVL+ M
Sbjct: 514 GGLCDVERGDEALKMLQVMSERG-CEPN-----LYTYSILINGLCKTKRVEDAINVLDVM 567

Query: 507 IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC----- 561
           +  G VPDV T++ L+  F          + F  +R +G EPD   + +LI  +C     
Sbjct: 568 LEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNV 627

Query: 562 -KYLSNSNLM------PDAATKELLKKSLWKE 586
            K +    LM      PDAAT   L +SL  E
Sbjct: 628 EKAIEVMQLMLEKGCNPDAATYFSLMRSLTTE 659



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 91/455 (20%), Positives = 175/455 (38%), Gaps = 52/455 (11%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           S  +Y  +++ +++ G +   +E   +++     P+  T+  +++    +G LD AL  F
Sbjct: 23  SNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALSHF 82

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEM 289
                M    T+  Y IL+ G    +R DEA  LL+EM      P  A+    +  + +M
Sbjct: 83  RGK--MWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKM 140

Query: 290 GFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKAL 349
           G I  A   L+ ML    + +V  Y                   I    Q     + + L
Sbjct: 141 GKIDAARNVLKMMLERSCVPDVITYTS----------------LIVGCCQTNALDEARKL 184

Query: 350 ANTLDE--WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY 407
              + E   +P+ V+  A         L+  + +  +  E +      V  + G   D +
Sbjct: 185 MEKMKESGLTPDTVAYNA---------LLNGLCKQNQLEEVSKLLEEMV--EAGREPDTF 233

Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD- 466
           +   ++  L   G  E   +++ K+          T   ++D +    K D A +   D 
Sbjct: 234 SYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDM 293

Query: 467 -DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF 525
             R  C P      ++ Y++L+   ++  R  DA  V+E+M  +GI PD+ T++ L+   
Sbjct: 294 VGRR-CAPT-----VITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGL 347

Query: 526 ALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDA 573
              G  +   +L  ++ +    PD   + +L+   CK             +      P+ 
Sbjct: 348 CKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNL 407

Query: 574 ATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
            T   +     K G+  E   V E  ++++  P +
Sbjct: 408 VTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDV 442



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/250 (20%), Positives = 103/250 (41%), Gaps = 18/250 (7%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHA--------LRSAPNADSALSIMEALK 93
           L+D +  A +   ++ L  ++ ++   P +VT++        L    +A   L +M    
Sbjct: 343 LLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERG 402

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
             PN     + +        K    H++  L+ ++S +  +   V +  L+  Y  +  +
Sbjct: 403 CQPNLVTFNTMIDGFCKA-GKVDEGHKVLELMKEVSCTPDV---VTYSTLIDGYCKANRM 458

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           +   +       +A      SY+ ++     TGK  EA E    +  +G  P S  Y ++
Sbjct: 459 QDAFAILGISPDKA------SYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALI 512

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           I  L ++ + D AL++   +     +     Y IL+ G    +R ++A ++L+ M + G 
Sbjct: 513 IGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGC 572

Query: 274 FPGRAMRVAL 283
            P  A   +L
Sbjct: 573 VPDVATYTSL 582



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 93/469 (19%), Positives = 170/469 (36%), Gaps = 71/469 (15%)

Query: 72  VTHALRSAPNADSALSIMEAL---KSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDI 128
           V   L  +   + A  I+E +   K  P+      T ++L     K  +  E + L+ D+
Sbjct: 238 VVACLCESGKYEEAGKILEKMIEKKCGPDVV----TYNSLMDGFCKVSKMDEAERLLEDM 293

Query: 129 SSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN 188
              +     + +  L+  +S +  L        +  +        +YN ++    K GK 
Sbjct: 294 VGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKL 353

Query: 189 FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI- 247
            EA E    ++++   P+  TY++++  L  LGK+D A  +      M ++R  +  L+ 
Sbjct: 354 EEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLE----MMLERGCQPNLVT 409

Query: 248 ---LVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-------ERMQEMGFIQGANE 297
              +++GF    + DE   +L  M++    P       L        RMQ+   I G + 
Sbjct: 410 FNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAILGIS- 468

Query: 298 FLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWS 357
                 PDK                            +Y   L+       +     E +
Sbjct: 469 ------PDKA---------------------------SYSSMLEGLCSTGKV-----EEA 490

Query: 358 PEVVSLLADAKFVWTTR---LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT 414
            EV+ L+       T+    L+   L   +  + A      V  + G   ++Y    ++ 
Sbjct: 491 QEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKML-QVMSERGCEPNLYTYSILIN 549

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR-TLCGP 473
            L +   VE    ++  +   G     +T   +ID +    K DAA + F   R + C P
Sbjct: 550 GLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEP 609

Query: 474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
                  L Y+ L+    +      AI V++ M+  G  PD  T+  LM
Sbjct: 610 DK-----LAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLM 653



 Score = 46.6 bits (109), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS L+  L K  +  DA  +LE M+  G  P++ TF+ ++  F   G      K+  +++
Sbjct: 375 YSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMK 434

Query: 543 QNGVEPDAYMFKVLIQAYCK------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
           +    PD   +  LI  YCK        +   + PD A+   + + L   G+ +EA  V
Sbjct: 435 EVSCTPDVVTYSTLIDGYCKANRMQDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEV 493


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g31850, chloroplastic; AltName: Full=Protein PROTON
           GRADIENT REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 131/585 (22%), Positives = 240/585 (41%), Gaps = 75/585 (12%)

Query: 45  SIRLAVRSNSSNSLSSLLNDRLLDPFI-----VTHALRSAPNADSALSIMEALKSNPNFS 99
           S+R +V S  S+  S  +  +   P +     VT  L+S P+ DS+ S  +++  N N  
Sbjct: 56  SMRCSVVSMKSSDFSGSMIRKSSKPDLSSSEEVTRGLKSFPDTDSSFSYFKSVAGNLNLV 115

Query: 100 HNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN-FMNLMQWYSTSGDLELVLS 158
           H   T + +   L    +  E+  +  D+   + +    N ++ + +  S  G L+    
Sbjct: 116 HTTETCNYMLEALRVDGKLEEMAYVF-DLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPY 174

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
              + R+   +L+  SYN ++ +  K+    EA+E +R++I EG  P+ +TY+ +   +V
Sbjct: 175 ALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSL---MV 231

Query: 219 NLGK---LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            LGK   +DS + +   +  + +K     + I +       + +EA  +L  M D+G  P
Sbjct: 232 GLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGP 291

Query: 276 GRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRI 334
                 V ++ +     +  A E   +M      K  R+  D                R+
Sbjct: 292 DVVTYTVLIDALCTARKLDCAKEVFEKM------KTGRHKPD----------------RV 329

Query: 335 AYGVQLKPWLDPKALANTLDEWS--------PEVVS--LLADAKFVWTTRLVCKVLRHFK 384
            Y   L  + D + L +    WS        P+VV+  +L DA        +CK     +
Sbjct: 330 TYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDA--------LCKAGNFGE 381

Query: 385 SPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI 444
           + +T       V    G   +++    ++  L R   ++    L   + S G++    T 
Sbjct: 382 AFDTLD-----VMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTY 436

Query: 445 RLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLE 504
            + ID+YG S  + +AL+ F   +T          ++  ++ L +L K  RD +A  +  
Sbjct: 437 IVFIDYYGKSGDSVSALETFEKMKTK----GIAPNIVACNASLYSLAKAGRDREAKQIFY 492

Query: 505 EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY- 563
            +   G+VPD  T++ +M  ++  G+     KL S + +NG EPD  +   LI    K  
Sbjct: 493 GLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKAD 552

Query: 564 -----------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
                      +    L P   T   L   L K G+ +EA  + E
Sbjct: 553 RVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFE 597



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 35/199 (17%)

Query: 71   IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
            IV   L  A N D AL +   L S+ +FS    T   L   L+KS R +E K L      
Sbjct: 860  IVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQL------ 913

Query: 131  SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                     F  ++                 +Y  R    +   YNI+++ + K G+   
Sbjct: 914  ---------FEGML-----------------DYGCRP---NCAIYNILINGFGKAGEADA 944

Query: 191  AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
            A   F++++ EG  P+ +TY+V+++ L  +G++D  L  F  L    +      Y +++ 
Sbjct: 945  ACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIIN 1004

Query: 251  GFVGVERFDEAKSLLNEMR 269
            G     R +EA  L NEM+
Sbjct: 1005 GLGKSHRLEEALVLFNEMK 1023



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 50/102 (49%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y  ++   +K+G+ +EA + F  ++D G  PN   Y ++I      G+ D+A  +F  +
Sbjct: 893 TYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRM 952

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               ++   K Y +LV+    V R DE      E+++ G  P
Sbjct: 953 VKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNP 994



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 80/386 (20%), Positives = 143/386 (37%), Gaps = 27/386 (6%)

Query: 83   DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
            D+A+S  E L +N       S L  +     K       +TL    +    +   +   N
Sbjct: 730  DNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYN 789

Query: 143  LMQWYSTSGDL-ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            L+       D+ E+    + + +    +    +YN ++  Y K+GK  E  E ++++   
Sbjct: 790  LLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTH 849

Query: 202  GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR-IKRTSKQYLILVEGFVGVERFDE 260
                N+ T+ ++I  LV  G +D AL+++  L   R    T+  Y  L++G     R  E
Sbjct: 850  ECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYE 909

Query: 261  AKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSD 319
            AK L   M D G  P  A+  + +    + G    A    + M+ +    +++ Y    D
Sbjct: 910  AKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVD 969

Query: 320  DDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKV 379
                         R+  G+     L    L       +P+VV             L+   
Sbjct: 970  CLCMVG-------RVDEGLHYFKELKESGL-------NPDVVCY----------NLIING 1005

Query: 380  LRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
            L      E A   F  +    G T D+Y    ++  L   G VE   ++  +++  G+  
Sbjct: 1006 LGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEP 1065

Query: 440  PFSTIRLIIDFYGISKKADAALKAFH 465
               T   +I  Y +S K + A   + 
Sbjct: 1066 NVFTFNALIRGYSLSGKPEHAYAVYQ 1091



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 12/122 (9%)

Query: 483  YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
            Y  L+  L+K  R ++A  + E M+  G  P+   ++ L+  F   G+      LF  + 
Sbjct: 894  YGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMV 953

Query: 543  QNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRK 590
            + GV PD   + VL+   C            K L  S L PD     L+   L K  R +
Sbjct: 954  KEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLE 1013

Query: 591  EA 592
            EA
Sbjct: 1014 EA 1015



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 71/147 (48%), Gaps = 7/147 (4%)

Query: 416  LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPI 474
              + G  +    L  ++  +G+R    T  +++D   +  + D  L  F +   +   P 
Sbjct: 936  FGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPD 995

Query: 475  SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS-GIVPDVQTFSGLMYHFALQGDEKI 533
                 ++ Y+ ++  L K  R  +A+ +  EM  S GI PD+ T++ L+ +  + G  + 
Sbjct: 996  -----VVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEE 1050

Query: 534  VQKLFSMVRQNGVEPDAYMFKVLIQAY 560
              K+++ +++ G+EP+ + F  LI+ Y
Sbjct: 1051 AGKIYNEIQRAGLEPNVFTFNALIRGY 1077



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 123/608 (20%), Positives = 221/608 (36%), Gaps = 141/608 (23%)

Query: 71  IVTHALRSAPNADSALSIMEALKSN---PNFSHNQSTLHALATVLAKSQRNHELK---TL 124
           I+  AL  A N   A   ++ ++     PN       LH   T++    R H L     L
Sbjct: 368 ILVDALCKAGNFGEAFDTLDVMRDQGILPN-------LHTYNTLICGLLRVHRLDDALEL 420

Query: 125 IGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR----------AKLLS--- 171
            G++ S      +  ++  + +Y  SGD    L T+ + + +          A L S   
Sbjct: 421 FGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAK 480

Query: 172 ----------------------TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRT 209
                                 + +YN++M  Y+K G+  EA++   ++++ G  P+   
Sbjct: 481 AGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIV 540

Query: 210 YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
              +I  L    ++D A ++F  +  M++K T   Y  L+ G     +  EA  L   M 
Sbjct: 541 VNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMV 600

Query: 270 DDGKFPGR--------------AMRVALE---RMQEMGFIQGANEFLREMLPDKRIKNVR 312
             G  P                 + +AL+   +M +MG +   + F    +    +KN +
Sbjct: 601 QKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCV--PDVFTYNTIIFGLVKNGQ 658

Query: 313 YYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVV--SLLADAKFV 370
             E                  + +  Q+K  + P  +  TL    P VV  SL+ DA  +
Sbjct: 659 VKE-----------------AMCFFHQMKKLVYPDFV--TLCTLLPGVVKASLIEDAYKI 699

Query: 371 WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHG---HVELVDR 427
            T                  +F    A QP    +++  + + +ILA  G    V   +R
Sbjct: 700 IT------------------NFLYNCADQPA---NLFWEDLIGSILAEAGIDNAVSFSER 738

Query: 428 LIAK-LRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSL 486
           L+A  +  DG  +    IR       +S  A    + F  D  +   +  + L++    L
Sbjct: 739 LVANGICRDGDSILVPIIRYSCKHNNVS-GARTLFEKFTKDLGVQPKLPTYNLLI--GGL 795

Query: 487 LRTLTKCKRDFDAINVLEEMIF----SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           L          D I + +++      +G +PDV T++ L+  +   G    + +L+  + 
Sbjct: 796 LEA--------DMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMS 847

Query: 543 QNGVEPDAYMFKVLIQA-------------YCKYLSNSNLMPDAATKELLKKSLWKEGRR 589
            +  E +     ++I               Y   +S+ +  P A T   L   L K GR 
Sbjct: 848 THECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRL 907

Query: 590 KEAAAVEE 597
            EA  + E
Sbjct: 908 YEAKQLFE 915


>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
          Length = 991

 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 120/523 (22%), Positives = 207/523 (39%), Gaps = 47/523 (8%)

Query: 78  SAPNADSALSIMEALKSNPNFSHNQST----LHALATVLAKSQRNHELKTLIGDISSSKF 133
           +AP   +AL+  E L     F H   +    LH L+   A +Q    + +++    +++ 
Sbjct: 66  TAPEPATALAFFEWLARRDGFRHTADSHAALLHLLSRRRAPAQYERLVVSMLNCSDTAED 125

Query: 134 LNVSVNFMNLMQWYSTSGDLELVLS----------------------TWNEYRQRAKLLS 171
           + VS +    +Q    +G   L LS                       +++  Q   L  
Sbjct: 126 MRVSAD---AIQAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPD 182

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
           T +YN ++  Y K G    A   FR +++ G  P + T   ++      G+L  A  +F 
Sbjct: 183 TVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFL 242

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMG 290
            +PLM  +R    Y IL++G    +   EA  L   M+ DG  P  RA    +  + + G
Sbjct: 243 MMPLMGCQRNEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSG 302

Query: 291 FIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAY-----GVQLKPWLD 345
            +  A      M  +  + +V  Y +       +    N  ++I       G     W  
Sbjct: 303 RVGDARLLFDAMPQNGVVPSVMTY-NAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTY 361

Query: 346 PKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTH- 404
              +    D+ + E   LL +A     T  V            A  F   +  +      
Sbjct: 362 NTLIYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSS 421

Query: 405 ----DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
               D+    K++  L +   ++    L+ ++ ++G+     T   IID Y  S K D A
Sbjct: 422 KCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIA 481

Query: 461 LKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           L+     +R  C P +       Y+SL+  L K K+   A+ +L +M   GI+P+V T++
Sbjct: 482 LEVLKMMERDGCQPNA-----WTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYT 536

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            L+     + D     +LF M+ QNG++PD + + VL  A CK
Sbjct: 537 TLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCK 579



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 114/499 (22%), Positives = 192/499 (38%), Gaps = 47/499 (9%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+   L  A     AL +   +K +   S N      L + L KS R  + + L   +  
Sbjct: 258 ILIQGLCEAKCVREALVLFLMMKRD-GCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQ 316

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           +  +   + +  ++  YS  G +   L       +        +YN ++       K  E
Sbjct: 317 NGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQ-KTEE 375

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A E     + EG  P   T+T +I       K D AL + + +   + K   + +  L+ 
Sbjct: 376 AEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLIN 435

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIK 309
             +  +R  EAK LLNE+  +G  P      ++ +   + G +  A E L+ M  D    
Sbjct: 436 SLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQP 495

Query: 310 NVRYYEDGSDDDEDENDDNNSGVRIAYG-VQLKPWLDPKALANTL--DEWSPEVVSLLAD 366
           N   Y              NS   + YG V+ K      AL   +  D   P V++    
Sbjct: 496 NAWTY--------------NS---LMYGLVKDKKLHKAMALLTKMQKDGIIPNVIT---- 534

Query: 367 AKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVD 426
               +TT L  +   H    + A+  F  +  Q G   D +A   +   L + G  E   
Sbjct: 535 ----YTTLLQGQCDEH--DFDNAFRLF-EMMEQNGLKPDEHAYAVLTDALCKAGRAEEAY 587

Query: 427 RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL---CGPISKFKLMLLY 483
             I +    G+ L       +ID  G SK  +    A   +R +   C P S       Y
Sbjct: 588 SFIVR---KGVALTKVYYTTLID--GFSKAGNTDFAATLIERMIDEGCTPDS-----YTY 637

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           S LL  L K KR  +A+ +L++M   GI   +  ++ L+     +G     +++++ +  
Sbjct: 638 SVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTS 697

Query: 544 NGVEPDAYMFKVLIQAYCK 562
           +G +P A  + V I +YCK
Sbjct: 698 SGHKPSATTYTVFINSYCK 716



 Score = 46.6 bits (109), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 42/224 (18%), Positives = 95/224 (42%), Gaps = 9/224 (4%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI--GDISSSKFLNVSVNF 140
           D+A  + E ++ N     ++     L   L K+ R  E  + I    ++ +K     V +
Sbjct: 549 DNAFRLFEMMEQN-GLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTK-----VYY 602

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
             L+  +S +G+ +   +             + +Y++++    K  +  EA+    Q+  
Sbjct: 603 TTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSL 662

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
            G       YT++I+ ++  GK D A  +++ +     K ++  Y + +  +    R ++
Sbjct: 663 RGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLED 722

Query: 261 AKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREML 303
           A+ L+ +M  +G  P      + ++    MG+I  A   L+ M+
Sbjct: 723 AEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMV 766



 Score = 43.1 bits (100), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 51/258 (19%), Positives = 99/258 (38%), Gaps = 28/258 (10%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDP-----FIVTHALRSAPNADSALSIMEALKSNP 96
           LID    A  ++ + +L   + D    P      ++ HAL      + AL I++ +    
Sbjct: 605 LIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQM---- 660

Query: 97  NFSHNQSTLHALATV---LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
           +    + T+ A   +   + +  ++   K +  +++SS     +  +   +  Y   G L
Sbjct: 661 SLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRL 720

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           E       +  +        +YNI++      G    A  T ++++     PN  TY ++
Sbjct: 721 EDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLL 780

Query: 214 IEHLV----------------NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++HL+                NL +LD   ++   +    +  T   Y  L+ GF    R
Sbjct: 781 LKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGR 840

Query: 258 FDEAKSLLNEMRDDGKFP 275
            +EA  LL+ M   G  P
Sbjct: 841 LEEACLLLDHMCGKGLSP 858


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 129/603 (21%), Positives = 232/603 (38%), Gaps = 84/603 (13%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           V H    A + D+   I+E + +      + +    L   L K  R  E   L   +  S
Sbjct: 130 VIHGYCKAGDLDTGFKILEEMLAAGCIP-DAAAYFVLIDPLCKLGRVDEAYELFERMRKS 188

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR------------------------- 166
             L   V FM L++  S  G L+     + E  +R                         
Sbjct: 189 GCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEA 248

Query: 167 --------AKLLSTE--SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
                   AK ++T   +YN +M  Y K G+  + ++   Q+++    P+ +TY +++  
Sbjct: 249 NEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAG 308

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD------ 270
                +LD ALE+F  L     K  +  Y  +++G    +R +EAK+  +E  D      
Sbjct: 309 FSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEALDVISYTT 368

Query: 271 ------DGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDE 324
                 D K    A  +  E+++  G     N      + D  +K  R  EDG  + ED 
Sbjct: 369 VIKGLADSKRIDEACEL-FEKLKTAGC--SPNVVAYTAVIDGLLKAGRI-EDGLKNFEDM 424

Query: 325 NDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFK 384
           +  +    R  Y V +      + L +    +   V          +TT L+    +  K
Sbjct: 425 SGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTT-LIDGFSKASK 483

Query: 385 SPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVEL-----VDRLIAKLRSDGMRL 439
             E        +   P  T   Y      +I+  HG  +L        +IA++R  G   
Sbjct: 484 MDEARKLLDVMLTKGPEPTAVTYG-----SIV--HGFCKLDMINEAKEVIAQMRERGCEP 536

Query: 440 PFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD 498
                  ++ +Y    +A+ A +   +     C P      ++LY+SL+  L    R  +
Sbjct: 537 GLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPD-----VILYTSLIDLLFSTGRVPE 591

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A +V + MI  G  PD  T+  ++ +F+  G+ +   ++  ++ ++GV PD + +  L+ 
Sbjct: 592 ARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMD 651

Query: 559 AYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAV-EERCEKINDV 605
            Y K             +  S + P+A T  +L   L+K+G+   A ++ +E  EK    
Sbjct: 652 GYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVP 711

Query: 606 PSL 608
           P+L
Sbjct: 712 PTL 714



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 99/222 (44%), Gaps = 9/222 (4%)

Query: 64  DRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTL-HALATV--------LAK 114
           D  L+ F +  +    PNA +  +I++ L         ++    AL  +        LA 
Sbjct: 316 DDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEALDVISYTTVIKGLAD 375

Query: 115 SQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTES 174
           S+R  E   L   + ++      V +  ++     +G +E  L  + +    + + +  +
Sbjct: 376 SKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTT 435

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           Y +V+    K     +A + F Q++ +G +P++ TYT +I+      K+D A ++   + 
Sbjct: 436 YTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVML 495

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
               + T+  Y  +V GF  ++  +EAK ++ +MR+ G  PG
Sbjct: 496 TKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPG 537



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 79/382 (20%), Positives = 150/382 (39%), Gaps = 53/382 (13%)

Query: 190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV 249
           EA++  +++   G +P+     +++  L    K+D A+E+F  +P M  + T   Y  ++
Sbjct: 3   EALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVI 62

Query: 250 EGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIK 309
            G   +++ DEA    N M D+G  P       L      GF +     +  ML ++ +K
Sbjct: 63  SGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIH----GFCKAGQPQVGHMLLNQALK 118

Query: 310 NVR------------YYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWS 357
             R            Y + G         D ++G +I     L+  L    + +      
Sbjct: 119 RFRPDVFLYTSVIHGYCKAG---------DLDTGFKI-----LEEMLAAGCIPD------ 158

Query: 358 PEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILA 417
                  A A FV    L CK+ R     + A+  F     + G   D      ++  L+
Sbjct: 159 -------AAAYFVLIDPL-CKLGR----VDEAYELF-ERMRKSGCLGDYVTFMTLIEALS 205

Query: 418 RHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKF 477
            HG ++    L  ++   G          +I     + K D A + +     +   ++  
Sbjct: 206 NHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQ--TVVAKKVATS 263

Query: 478 KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL 537
           ++   Y+SL+    K  R  D + +L +M+     PD+QT++ L+  F+         +L
Sbjct: 264 RVA--YNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALEL 321

Query: 538 FSMVRQNGVEPDAYMFKVLIQA 559
           F ++   G +P+A  +  +IQ 
Sbjct: 322 FKLLSSYGCKPNAATYTTIIQG 343



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 1/150 (0%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST-ESYNIVMSVYAKTGKNFEAVETF 195
           +V F  LM      G  +   S + E  ++ ++  T  SY I++    K G+  EA   F
Sbjct: 678 AVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQF 737

Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
           +++ID G IP   TYT +I  L   G++  A ++   +  + +    + Y  L+ G +  
Sbjct: 738 QEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDS 797

Query: 256 ERFDEAKSLLNEMRDDGKFPGRAMRVALER 285
              D A  +  EM   G  P       L R
Sbjct: 798 SMVDTAWDVFQEMMKRGCAPNEVTYKVLRR 827



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 84/432 (19%), Positives = 171/432 (39%), Gaps = 21/432 (4%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           + +++  Y  +GDL+       E      +    +Y +++    K G+  EA E F ++ 
Sbjct: 127 YTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMR 186

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL----ILVEGFVGV 255
             G + +  T+  +IE L N GKLD A E++  +    I+R  + YL     L+      
Sbjct: 187 KSGCLGDYVTFMTLIEALSNHGKLDEACELYREM----IERGYEPYLEVQDSLIFALCKA 242

Query: 256 ERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
            + DEA  +   +        R A    ++   ++G +    + L +M+      +++ Y
Sbjct: 243 GKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTY 302

Query: 315 EDGSDDDEDEN--DDNNSGVRI--AYGVQLKPWLDPKALANTLD-EWSPEVVSLLADAKF 369
                     N  DD     ++  +YG +         +    D +   E  +   +A  
Sbjct: 303 NILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEALD 362

Query: 370 VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
           V +   V K L   K  + A   F  +    G + +V A   ++  L + G +E   +  
Sbjct: 363 VISYTTVIKGLADSKRIDEACELFEKLK-TAGCSPNVVAYTAVIDGLLKAGRIEDGLKNF 421

Query: 430 AKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLR 488
             +         +T  ++ID    ++    A K F    +  C P +     + Y++L+ 
Sbjct: 422 EDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDT-----ITYTTLID 476

Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548
             +K  +  +A  +L+ M+  G  P   T+  +++ F         +++ + +R+ G EP
Sbjct: 477 GFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEP 536

Query: 549 DAYMFKVLIQAY 560
             ++F  L+  Y
Sbjct: 537 GLFIFTSLLSYY 548



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 19/161 (11%)

Query: 454 SKKADAALKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV 512
           ++K D A++ F +  ++ C P      ++ Y++++  L    +  +A      MI +G  
Sbjct: 33  ARKIDKAIELFLEMPSMGCEPT-----IVSYNTVISGLASIDKMDEAYKFFNSMIDNGCE 87

Query: 513 PDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY--------- 563
           PDV  F+ L++ F   G  ++   L +   +    PD +++  +I  YCK          
Sbjct: 88  PDVIAFTTLIHGFCKAGQPQVGHMLLNQALKR-FRPDVFLYTSVIHGYCKAGDLDTGFKI 146

Query: 564 ---LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEK 601
              +  +  +PDAA   +L   L K GR  EA  + ER  K
Sbjct: 147 LEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRK 187



 Score = 46.6 bits (109), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 12/127 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+  L K  R  +A +  +EMI  GI+P+  T++ L+Y  A  G     +KL   + 
Sbjct: 717 YTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMV 776

Query: 543 QNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRK 590
           + GV PD   +  LI                + +      P+  T ++L++     GR  
Sbjct: 777 KLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRAL 836

Query: 591 EAAAVEE 597
           +  AV++
Sbjct: 837 DLEAVKQ 843



 Score = 40.0 bits (92), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 57/165 (34%), Gaps = 35/165 (21%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK----------- 222
           SYN V+S  A   K  EA + F  +ID G  P+   +T +I      G+           
Sbjct: 57  SYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQA 116

Query: 223 -----------------------LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
                                  LD+  ++   +        +  Y +L++    + R D
Sbjct: 117 LKRFRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVD 176

Query: 260 EAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREML 303
           EA  L   MR  G        + L E +   G +  A E  REM+
Sbjct: 177 EAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMI 221


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 106/435 (24%), Positives = 172/435 (39%), Gaps = 46/435 (10%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y+ ++S   KTGK  EA+E   ++ ++G  P+  TYT++++ L   GK+D A E+F  +
Sbjct: 12  TYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELFHKM 71

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
                   +  Y  L+ G    E  + A  LL EM   G  P        L  +  MG +
Sbjct: 72  IERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKV 131

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAY--GVQLKPWLDPKALA 350
             A +F   M       +V  Y              N  +   Y  G   + W     L 
Sbjct: 132 SEAKQFFDSMPSRGYSPDVVAY--------------NGLLDALYKEGKVAEAW----GLF 173

Query: 351 NTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
            T+D    +V   L     +    L+    R  K+ E    F   +A   GY  D     
Sbjct: 174 KTMDMADRKVAPDL-----ITYNTLIDGFCRVEKTDEAMKLFKDVIA--KGYMPDTVTYN 226

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470
            +L  LAR  +++  + +  K+   G     +T  +++  +         L+ + +    
Sbjct: 227 SILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTE- 285

Query: 471 CGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
                +F   +LL ++++  L K K+  DA  VLEEM   G VPDV T++ L+       
Sbjct: 286 ----KRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTN 341

Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKE 577
                 +LFS +  NG  PD   + V++   CK             +    L+PD  T  
Sbjct: 342 LVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFN 401

Query: 578 LLKKSLWKEGRRKEA 592
           +L   L K G+  EA
Sbjct: 402 ILMDGLCKAGKLDEA 416



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/192 (19%), Positives = 83/192 (43%), Gaps = 7/192 (3%)

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
           D++  K     + +  L+  +      +  +  + +   +  +  T +YN ++   A+  
Sbjct: 177 DMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKS 236

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
              EA E F++++D G  PN  TY++++     +G +   LE++     M  KR S   L
Sbjct: 237 NMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEE---MTEKRFSPDVL 293

Query: 247 I---LVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
           +   +++     ++ D+A  +L EM   G  P      + L+ + +   +  A+E    M
Sbjct: 294 LCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTM 353

Query: 303 LPDKRIKNVRYY 314
           + +    ++  Y
Sbjct: 354 VDNGCAPDIVSY 365



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YNI++    KT    +A E F  ++D G  P+  +Y+V++  L    K+  A  +F  +
Sbjct: 329 TYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRM 388

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              ++      + IL++G     + DEAK LL+ M +    P
Sbjct: 389 IERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLP 430



 Score = 46.6 bits (109), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 80/456 (17%), Positives = 167/456 (36%), Gaps = 77/456 (16%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T + L     + ++  E   L  D+ +  ++  +V + +++   +   +++     + + 
Sbjct: 189 TYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKM 248

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
                  +  +Y+IV+S + + G     +E + ++ ++   P+      +I+ L    K+
Sbjct: 249 VDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKV 308

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVA 282
           D A +V   +  +        Y IL++G       D+A  L + M D+G  P   +  V 
Sbjct: 309 DDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVV 368

Query: 283 LERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKP 342
           L  + +   +  A      M+  K + +V                          V    
Sbjct: 369 LNGLCKTNKVHDARVLFDRMIERKLVPDV--------------------------VTFNI 402

Query: 343 WLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHF----KSPETAWHFFCWVAY 398
            +D    A  LDE + +++ ++++   V    + C  L H     K  + A   F ++  
Sbjct: 403 LMDGLCKAGKLDE-AKDLLDVMSEHN-VLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMV- 459

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLI---AKLRSDGMRLPFSTIRLIIDFYGISK 455
           + G   DV     +L  L R G  +L   L+   + ++SDG                   
Sbjct: 460 EKGTVADVLPHNIVLAGLCREG--KLAQALLFFKSMVKSDG------------------- 498

Query: 456 KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
                   F  D            ++ Y++L+  L +  R   A++  ++M  SG  PD 
Sbjct: 499 -------EFSPD------------VVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDY 539

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAY 551
             ++ LM     QG      +L   +++ G   D +
Sbjct: 540 VAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSDCF 575



 Score = 43.5 bits (101), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 12/125 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ YS+++  L K  +  +A+ ++EEM   G+ PDV T++ ++      G      +LF 
Sbjct: 10  VVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELFH 69

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEG 587
            + + G   +   +  LI   CK             +++    PD  T   +   L + G
Sbjct: 70  KMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMG 129

Query: 588 RRKEA 592
           +  EA
Sbjct: 130 KVSEA 134



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 8/163 (4%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           + G+  DV     +++ L + G V     ++ ++   G+    +T  +I+D    + K D
Sbjct: 3   EKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVD 62

Query: 459 AALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
            A + FH   +R  C   +     + Y++L+  L K +    A  +LEEM   G  PD  
Sbjct: 63  EADELFHKMIERG-CSANT-----VAYNALINGLCKDENIERAYKLLEEMASKGYEPDNI 116

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
           T++ ++      G     ++ F  +   G  PD   +  L+ A
Sbjct: 117 TYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDA 159



 Score = 42.0 bits (97), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 83/206 (40%), Gaps = 22/206 (10%)

Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL 461
           ++ DV     ++ +L +   V+   +++ ++   G      T  +++D    +   D A 
Sbjct: 288 FSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAH 347

Query: 462 KAFH---DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
           + F    D+   C P      ++ YS +L  L K  +  DA  + + MI   +VPDV TF
Sbjct: 348 ELFSTMVDNG--CAPD-----IVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTF 400

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSN 566
           + LM      G     + L  ++ ++ V PD      L+   C+            Y+  
Sbjct: 401 NILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVE 460

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEA 592
              + D     ++   L +EG+  +A
Sbjct: 461 KGTVADVLPHNIVLAGLCREGKLAQA 486



 Score = 40.8 bits (94), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/138 (19%), Positives = 55/138 (39%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  ++     +G +   L    E  ++       +Y I++    + GK  EA E F +
Sbjct: 11  VTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELFHK 70

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +I+ G   N+  Y  +I  L     ++ A ++   +     +  +  Y  ++ G   + +
Sbjct: 71  MIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGK 130

Query: 258 FDEAKSLLNEMRDDGKFP 275
             EAK   + M   G  P
Sbjct: 131 VSEAKQFFDSMPSRGYSP 148


>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
 gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
          Length = 991

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 119/523 (22%), Positives = 207/523 (39%), Gaps = 47/523 (8%)

Query: 78  SAPNADSALSIMEALKSNPNFSHNQST----LHALATVLAKSQRNHELKTLIGDISSSKF 133
           +AP   +AL+  E L     F H   +    LH L+   A +Q    + +++    +++ 
Sbjct: 66  TAPEPATALAFFEWLARRDGFRHTADSHAALLHLLSRRRAPAQYERLVVSMLNCSDTAED 125

Query: 134 LNVSVNFMNLMQWYSTSGDLELVLS----------------------TWNEYRQRAKLLS 171
           + VS +    +Q    +G   L LS                       +++  Q   L  
Sbjct: 126 MRVSAD---AIQAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPD 182

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
           T +YN ++  Y K G    A   FR +++ G  P + T   ++      G+L  A  +F 
Sbjct: 183 TVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFL 242

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMG 290
            +PLM  +R    Y IL++G    +   +A  L   M+ DG  P  RA    +  + + G
Sbjct: 243 MMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSG 302

Query: 291 FIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAY-----GVQLKPWLD 345
            +  A      M  +  + +V  Y +       +    N  ++I       G     W  
Sbjct: 303 RVGDARLLFDAMPQNGVVPSVMTY-NAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTY 361

Query: 346 PKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTH- 404
              +    D+ + E   LL +A     T  V            A  F   +  +      
Sbjct: 362 NTLIYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSS 421

Query: 405 ----DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
               D+    K++  L +   ++    L+ ++ ++G+     T   IID Y  S K D A
Sbjct: 422 KCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIA 481

Query: 461 LKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           L+     +R  C P +       Y+SL+  L K K+   A+ +L +M   GI+P+V T++
Sbjct: 482 LEVLKMMERDGCQPNA-----WTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYT 536

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            L+     + D     +LF M+ QNG++PD + + VL  A CK
Sbjct: 537 TLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCK 579



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 114/499 (22%), Positives = 192/499 (38%), Gaps = 47/499 (9%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+   L  A     AL +   +K +   S N      L + L KS R  + + L   +  
Sbjct: 258 ILIQGLCDAKCVRKALVLFLMMKRD-GCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQ 316

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           +  +   + +  ++  YS  G +   L       +        +YN ++       K  E
Sbjct: 317 NGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQ-KTEE 375

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A E     + EG  P   T+T +I       K D AL + + +   + K   + +  L+ 
Sbjct: 376 AEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLIN 435

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIK 309
             +  +R  EAK LLNE+  +G  P      ++ +   + G +  A E L+ M  D    
Sbjct: 436 SLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQP 495

Query: 310 NVRYYEDGSDDDEDENDDNNSGVRIAYG-VQLKPWLDPKALANTL--DEWSPEVVSLLAD 366
           N   Y              NS   + YG V+ K      AL   +  D   P V++    
Sbjct: 496 NAWTY--------------NS---LMYGLVKDKKLHKAMALLTKMQKDGIIPNVIT---- 534

Query: 367 AKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVD 426
               +TT L  +   H    + A+  F  +  Q G   D +A   +   L + G  E   
Sbjct: 535 ----YTTLLQGQCDEH--DFDNAFRLF-EMMEQNGLKPDEHAYAVLTDALCKAGRAEEAY 587

Query: 427 RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL---CGPISKFKLMLLY 483
             I +    G+ L       +ID  G SK  +    A   +R +   C P S       Y
Sbjct: 588 SFIVR---KGVALTKVYYTTLID--GFSKAGNTDFAATLIERMIDEGCTPDS-----YTY 637

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           S LL  L K KR  +A+ +L++M   GI   +  ++ L+     +G     +++++ +  
Sbjct: 638 SVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTS 697

Query: 544 NGVEPDAYMFKVLIQAYCK 562
           +G +P A  + V I +YCK
Sbjct: 698 SGHKPSATTYTVFINSYCK 716



 Score = 46.6 bits (109), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 42/224 (18%), Positives = 95/224 (42%), Gaps = 9/224 (4%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI--GDISSSKFLNVSVNF 140
           D+A  + E ++ N     ++     L   L K+ R  E  + I    ++ +K     V +
Sbjct: 549 DNAFRLFEMMEQN-GLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTK-----VYY 602

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
             L+  +S +G+ +   +             + +Y++++    K  +  EA+    Q+  
Sbjct: 603 TTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSL 662

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
            G       YT++I+ ++  GK D A  +++ +     K ++  Y + +  +    R ++
Sbjct: 663 RGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLED 722

Query: 261 AKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREML 303
           A+ L+ +M  +G  P      + ++    MG+I  A   L+ M+
Sbjct: 723 AEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMV 766



 Score = 43.1 bits (100), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 51/258 (19%), Positives = 99/258 (38%), Gaps = 28/258 (10%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDP-----FIVTHALRSAPNADSALSIMEALKSNP 96
           LID    A  ++ + +L   + D    P      ++ HAL      + AL I++ +    
Sbjct: 605 LIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQM---- 660

Query: 97  NFSHNQSTLHALATV---LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
           +    + T+ A   +   + +  ++   K +  +++SS     +  +   +  Y   G L
Sbjct: 661 SLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRL 720

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           E       +  +        +YNI++      G    A  T ++++     PN  TY ++
Sbjct: 721 EDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLL 780

Query: 214 IEHLV----------------NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++HL+                NL +LD   ++   +    +  T   Y  L+ GF    R
Sbjct: 781 LKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGR 840

Query: 258 FDEAKSLLNEMRDDGKFP 275
            +EA  LL+ M   G  P
Sbjct: 841 LEEACLLLDHMCGKGLSP 858


>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
          Length = 1091

 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 110/538 (20%), Positives = 205/538 (38%), Gaps = 85/538 (15%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           V H LRSAP+   AL +  A    P   H   + + +  ++    R  ++  +  D+   
Sbjct: 71  VVHMLRSAPDPAEALELFTAAARQPTKVHTTESCNYMLELMRAHGRVGDMAQVF-DLMQK 129

Query: 132 KFLNVSVN-FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           + +  +V  F  +       G L          R+    L+  +YN ++    K+G + E
Sbjct: 130 QVVKTNVGTFATIFGGVGVEGGLRSAPVALPVMREAGMSLNAYTYNGLIYFLVKSGFDAE 189

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK---LDSALEVFSALPLMRIKRTSKQYLI 247
           A+E ++ ++++G  P+ RTY+V+   +V  GK   +D+ L + + +    +K     Y I
Sbjct: 190 AMEVYKAMVEDGISPSVRTYSVL---MVAFGKKRDVDTVLWLLNEMEARGVKPNVYSYTI 246

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR-VALERMQEMGFIQGANEFLREMLPDK 306
            +       RFDEA  +L +M D G  P      V ++ + + G +  A     +M    
Sbjct: 247 CIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKM---- 302

Query: 307 RIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLAD 366
                      SD   D         R+ Y   L    D     + ++ W+    +++AD
Sbjct: 303 ---------KASDQKPD---------RVTYITLLDKCGDSGDSQSVVEVWN----AMVAD 340

Query: 367 AKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVD 426
                                              Y  ++ +   ++  L + G V+   
Sbjct: 341 G----------------------------------YNDNIVSYTAVVDALCQVGRVDEAL 366

Query: 427 RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSL 486
            +  +++  GM     +   +I  +  +   D AL+ F +    CGP       +L+   
Sbjct: 367 AVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALELF-NHMNACGPSPNGYTHVLF--- 422

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           +    K  +   AI   E M   GIVPDV   + ++Y  A  G   + +++F  ++  GV
Sbjct: 423 INYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAMGV 482

Query: 547 EPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
            PD   + ++I+   K             +  S  +PD      L  +L+K G+  EA
Sbjct: 483 SPDTITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGKGNEA 540



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 101/246 (41%), Gaps = 24/246 (9%)

Query: 366 DAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELV 425
           D + V  T  V  +LR    P  A   F   A QP   H   +   ML ++  HG V  +
Sbjct: 61  DERRVVGTDSVVHMLRSAPDPAEALELFTAAARQPTKVHTTESCNYMLELMRAHGRVGDM 120

Query: 426 DRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLL--- 482
            ++   ++   ++    T   I    G+     +A  A         P+ +   M L   
Sbjct: 121 AQVFDLMQKQVVKTNVGTFATIFGGVGVEGGLRSAPVAL--------PVMREAGMSLNAY 172

Query: 483 -YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
            Y+ L+  L K   D +A+ V + M+  GI P V+T+S LM  F  + D   V  L + +
Sbjct: 173 TYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLLNEM 232

Query: 542 RQNGVEPDAYMFKVLI----------QAY--CKYLSNSNLMPDAATKELLKKSLWKEGRR 589
              GV+P+ Y + + I          +AY     + +S   PD  T  ++ + L   GR 
Sbjct: 233 EARGVKPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRL 292

Query: 590 KEAAAV 595
            +A AV
Sbjct: 293 SDAKAV 298



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 83/172 (48%)

Query: 104  TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
            T + + + L KS+R  +   L  ++ S  F      +  L+     SG +    + +NE 
Sbjct: 838  TYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEM 897

Query: 164  RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
             +     +   YNI+++ +   G      + F +++++G  P+ ++YT++I+ L   G+L
Sbjct: 898  LEYGCEPNCTIYNILLNGHRIAGNTENVCQLFEKMVEQGINPDIKSYTILIDTLCTAGRL 957

Query: 224  DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            +  L  F  L  + ++     Y +L++G    ER +EA SL NEM+  G  P
Sbjct: 958  NDGLCYFRQLHELGLEPDLIVYNLLIDGLGKSERIEEAVSLFNEMKKKGIIP 1009



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 90/226 (39%), Gaps = 28/226 (12%)

Query: 401  GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
            G   D +    +L  + +   VE + ++  ++   G    + T   II     SK+ + A
Sbjct: 796  GCGPDEFTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQA 855

Query: 461  LKAFHD------DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
            +  +++        T C           Y  LL  L K  +  DA N+  EM+  G  P+
Sbjct: 856  IDLYYNLMSEGFSPTPC----------TYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPN 905

Query: 515  VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------K 562
               ++ L+    + G+ + V +LF  + + G+ PD   + +LI   C            +
Sbjct: 906  CTIYNILLNGHRIAGNTENVCQLFEKMVEQGINPDIKSYTILIDTLCTAGRLNDGLCYFR 965

Query: 563  YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
             L    L PD     LL   L K  R +EA ++    +K   +P+L
Sbjct: 966  QLHELGLEPDLIVYNLLIDGLGKSERIEEAVSLFNEMKKKGIIPNL 1011



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 2/124 (1%)

Query: 147 YSTSGDLELVLSTWNEYRQRAKLLS--TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204
           YS +G   L ++    Y  +A  +S  T +Y +++   +K  K  EA+  F  +++ G +
Sbjct: 459 YSLAGSGRLGMAKRVFYELKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVESGCV 518

Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL 264
           P+      +I+ L   GK + A ++F  L  M+I+ T+  Y  L+ G     +  E   L
Sbjct: 519 PDVLALNSLIDTLYKGGKGNEAWQLFHKLKEMKIEPTNGTYNTLLSGLGREGKVKEVMQL 578

Query: 265 LNEM 268
           L EM
Sbjct: 579 LEEM 582


>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
 gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
          Length = 1153

 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 108/538 (20%), Positives = 207/538 (38%), Gaps = 85/538 (15%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           V H LRSAP    AL +  A    P   H   + + +  ++    R  ++  +  D+   
Sbjct: 78  VVHMLRSAPGPAEALELFTAAARQPTAVHTTESCNYMLELMRAHGRVGDMAQVF-DLMQK 136

Query: 132 KFLNVSVN-FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           + +  +V  F  +       G L          R+    L+  +YN ++    K+G + E
Sbjct: 137 QIVKANVGTFATVFSGVGVQGGLRSAPVALPVMREAGMSLNGYTYNGLIYFLVKSGFDAE 196

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK---LDSALEVFSALPLMRIKRTSKQYLI 247
           A+E ++ ++++G  P+ RTY+V+   +V+ GK   +D+ L + + +    +K     Y I
Sbjct: 197 AMEVYKAMVEDGISPSVRTYSVL---MVSFGKKRDVDTVLWLLNEMEARGVKPNVYSYTI 253

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR-VALERMQEMGFIQGANEFLREMLPDK 306
            +       RFDEA  +L +M D G  P      V ++ + + G +  A           
Sbjct: 254 CIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDA----------- 302

Query: 307 RIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLAD 366
             K+V +    SD   D         R+ Y   L    D     + ++ W+    +++AD
Sbjct: 303 --KDVFWKMKASDQKPD---------RVTYITLLDKCGDSGDSQSVMEIWN----AMVAD 347

Query: 367 AKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVD 426
                                             GY  ++ +   ++  L + G ++   
Sbjct: 348 ----------------------------------GYNDNIVSYTAVVDALCQVGRLDEAL 373

Query: 427 RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSL 486
            +  +++  G+     +   +I  +  +   D AL+ F +    CGP       +L+   
Sbjct: 374 AVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELF-NHMNACGPSPNGYTHVLF--- 429

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           +    K  +   AI   E M   GIVPDV   + ++   A  G   + +++F  ++  GV
Sbjct: 430 INYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGV 489

Query: 547 EPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
            PD   + ++I+   K             +  +  +PD      L  +L+K G+  EA
Sbjct: 490 SPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGNEA 547



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 82/172 (47%)

Query: 104  TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
            T + + + L KS+R  +   L  ++ S  F      +  L+     +G +    + +NE 
Sbjct: 845  TYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEM 904

Query: 164  RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
             +     +   YNI+++ +   G      + F +++++G  P+ ++YTV+I+ L   G+L
Sbjct: 905  LEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRL 964

Query: 224  DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            +  L  F  L  + ++     Y +L++G    ER +EA  L NEM+  G  P
Sbjct: 965  NDGLSYFRQLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVP 1016



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 97/239 (40%), Gaps = 24/239 (10%)

Query: 373 TRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKL 432
           T  V  +LR    P  A   F   A QP   H   +   ML ++  HG V  + ++   +
Sbjct: 75  TESVVHMLRSAPGPAEALELFTAAARQPTAVHTTESCNYMLELMRAHGRVGDMAQVFDLM 134

Query: 433 RSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLL----YSSLLR 488
           +   ++    T   +    G+     +A  A         P+ +   M L    Y+ L+ 
Sbjct: 135 QKQIVKANVGTFATVFSGVGVQGGLRSAPVAL--------PVMREAGMSLNGYTYNGLIY 186

Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548
            L K   D +A+ V + M+  GI P V+T+S LM  F  + D   V  L + +   GV+P
Sbjct: 187 FLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKP 246

Query: 549 DAYMFKVLI----------QAY--CKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
           + Y + + I          +AY     + +S   PD  T  ++ + L   GR  +A  V
Sbjct: 247 NVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDV 305



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 90/226 (39%), Gaps = 28/226 (12%)

Query: 401  GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
            G   D +    +L  + +   +E + R+ A++   G    + T   II     SK+ + A
Sbjct: 803  GCGPDEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQA 862

Query: 461  LKAFHD------DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
            +  +++        T C           Y  LL  L K  +  DA N+  EM+  G  P+
Sbjct: 863  IDLYYNLMSEGFSPTPC----------TYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPN 912

Query: 515  VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------K 562
               ++ L+    + G+ + V ++F  + + G+ PD   + VLI   C            +
Sbjct: 913  CTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFR 972

Query: 563  YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
             L    L PD     LL   L K  R +EA  +    +K   VP+L
Sbjct: 973  QLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNL 1018



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 85/431 (19%), Positives = 172/431 (39%), Gaps = 53/431 (12%)

Query: 143  LMQWYSTSGDLELVLSTWNEYRQRAKLLSTES--YNIVMSVYAKTGKNFEAVETFRQVID 200
            ++  +  +G ++  L T  EY  +A   + +S  ++++  +  K G   +++E    +  
Sbjct: 673  ILPSFVKNGLMKEALHTVKEYILKADCNTDKSSFHSLMEGILNKAGVE-KSIEFAENIAS 731

Query: 201  EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
             G + N      +I HL    K   A ++F+    + +   +  Y  L+ G V     D 
Sbjct: 732  RGILLNDFFLCPLIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDI 791

Query: 261  AKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSD 319
            A+ L  EM+  G  P      + L+ M       G +  + EML   R++    +  G +
Sbjct: 792  AEDLFTEMKRLGCGPDEFTYNLILDAM-------GKSMRIEEML---RVQ-AEMHRKGYE 840

Query: 320  DDEDENDDNNSGV----RIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL 375
                  +   SG+    R+   + L   L  +  + T   + P +  LL   K V    L
Sbjct: 841  STYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENL 900

Query: 376  VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH---GHVELVDRLIAKL 432
              ++L +   P                   +Y +     +L  H   G+ E V ++  K+
Sbjct: 901  FNEMLEYGCKPNCT----------------IYNI-----LLNGHRIAGNTENVCQIFEKM 939

Query: 433  RSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL---MLLYSSLLRT 489
               G+     +  ++ID    + + +  L  F         + +  L   +++Y+ L+  
Sbjct: 940  VEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQ-------LLELGLEPDLIIYNLLIDG 992

Query: 490  LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
            L K +R  +A+ +  EM   GIVP++ T++ L+ H    G      +++  +   G +P+
Sbjct: 993  LGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELLIKGWKPN 1052

Query: 550  AYMFKVLIQAY 560
             + +  LI+ Y
Sbjct: 1053 VFTYNALIRGY 1063



 Score = 46.6 bits (109), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 55/119 (46%)

Query: 150 SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRT 209
           SG L +    + E +       T +Y +++   +K  K  EA+  F  +++ G +P+   
Sbjct: 471 SGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLA 530

Query: 210 YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
              +I+ L   GK + A ++F  L  M+I+ T+  Y  L+ G     +  E   LL EM
Sbjct: 531 LNSLIDTLYKGGKGNEAWKLFHQLKEMKIEPTNGTYNTLLSGLGREGKVKEVMHLLEEM 589



 Score = 43.1 bits (100), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 66/151 (43%), Gaps = 17/151 (11%)

Query: 143  LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
            L+     S  +E  +  +NE +++  + +  +YN ++    K GK  EA + + +++ +G
Sbjct: 989  LIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELLIKG 1048

Query: 203  AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
              PN  TY  +I      G  D+A   +  + +    +T+     L+ G V     + A+
Sbjct: 1049 WKPNVFTYNALIRGYSVSGSTDNAYAAYDCVAVGVSLKTA-----LISGLVDENLINIAE 1103

Query: 263  SLLNEMRDDGKFP------------GRAMRV 281
             L  EM+  G  P            G++MR+
Sbjct: 1104 GLFAEMKRRGCGPDQFTYNLILDAIGKSMRI 1134


>gi|297735213|emb|CBI17575.3| unnamed protein product [Vitis vinifera]
          Length = 656

 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 108/251 (43%), Gaps = 19/251 (7%)

Query: 68  DPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD 127
           D + V   L+S P  + A            F H+Q T   +  +  +++R   +  +   
Sbjct: 158 DSYTVNQVLKSHPPMEKAWLFFNWASRLKGFKHDQFTYTTMLDIFGEARRIESMNYVFQQ 217

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           +        +V + +LM W+S  GD+E  +  W E + +   L+  SY   M +     +
Sbjct: 218 MQEKGIKTDAVTYTSLMHWFSNDGDIERAVRVWKEMKAKGCCLTVVSYTAYMKILFDNKR 277

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG-----------KLDSALEVFSALPLM 236
             EA + +++++  G  PN  TYTV++EHL   G           K  +ALE+FS +   
Sbjct: 278 VKEAADVYKEMLQSGCAPNCYTYTVLMEHLTGSGKHLLQFSCIACKYKAALEIFSRMQEA 337

Query: 237 RIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG---KFPGRAMRVALERMQEMGFIQ 293
            ++       IL+E F    +      +L  M+D+    ++P     V LE +Q +    
Sbjct: 338 GVQPDKATCNILIEKFCKTGQTWAITQILLYMKDNFLVLRYP-----VYLEALQTLKVAG 392

Query: 294 GANEFLREMLP 304
            ++  LR++ P
Sbjct: 393 ESDILLRQVNP 403



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 96/203 (47%), Gaps = 15/203 (7%)

Query: 371 WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIA 430
           W +  V +VL+     E AW FF W +   G+ HD +    ML I      +E ++ +  
Sbjct: 157 WDSYTVNQVLKSHPPMEKAWLFFNWASRLKGFKHDQFTYTTMLDIFGEARRIESMNYVFQ 216

Query: 431 KLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTL 490
           +++  G++    T   ++ ++      + A++ + + +     ++    ++ Y++ ++ L
Sbjct: 217 QMQEKGIKTDAVTYTSLMHWFSNDGDIERAVRVWKEMKAKGCCLT----VVSYTAYMKIL 272

Query: 491 TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE-----------KIVQKLFS 539
              KR  +A +V +EM+ SG  P+  T++ LM H    G             K   ++FS
Sbjct: 273 FDNKRVKEAADVYKEMLQSGCAPNCYTYTVLMEHLTGSGKHLLQFSCIACKYKAALEIFS 332

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK 562
            +++ GV+PD     +LI+ +CK
Sbjct: 333 RMQEAGVQPDKATCNILIEKFCK 355


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 123/593 (20%), Positives = 245/593 (41%), Gaps = 46/593 (7%)

Query: 51  RSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTL 105
           R +S+ SL   +    LD  IV +     +       D A      +++N     ++ T 
Sbjct: 218 RVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEAN-GLKPDEVTY 276

Query: 106 HALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQ 165
            ++  VL K+ R  E   +   +  ++ +  +  +  ++  Y ++G  +   S     R 
Sbjct: 277 TSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRA 336

Query: 166 RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
           +  + S  +YN +++   K GK  EA+  F ++  + A PN  TY ++I+ L   GKLD 
Sbjct: 337 KGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKKDAA-PNLSTYNILIDMLCRAGKLDC 395

Query: 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-E 284
           A E+  ++    +    +   I+V+     ++ DEA ++  +M      P      +L +
Sbjct: 396 AFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLID 455

Query: 285 RMQEMGFIQGANEFLREML-PDKRIKNVRY-------YEDGSDDDEDENDDNNSGVRIAY 336
            + ++G +  A +   +ML  D R  ++ Y       +  G  +D  +   +      + 
Sbjct: 456 GLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSP 515

Query: 337 GVQL-KPWLDPKALANTLDEWSPEVVSLLADAKFVWTTR----LVCKVLRHFKSPETAWH 391
            +QL   ++D    A    E    +   +   +FV   R    L+  +++   + ET   
Sbjct: 516 DLQLLNTYMDCMFKAGE-PEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYEL 574

Query: 392 FFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY 451
           F  +   + G   D  A   ++    + G V    +L+ ++++ G      T   +ID  
Sbjct: 575 F--YSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGL 632

Query: 452 GISKKADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSG 510
               + D A   F + ++      + +L +++YSSL+    K  R  +A  +LEE++  G
Sbjct: 633 AKIDRLDEAYMLFEEAKS-----KRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKG 687

Query: 511 IVPDVQTFSGLMYHFALQGDEKIVQKL--FSMVRQNGVEPDAYMFKVLIQAYCKY----- 563
           + P+V T++ L+   AL   E+I + L  F  +++    P+   + +LI   CK      
Sbjct: 688 LTPNVYTWNSLLD--ALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNK 745

Query: 564 -------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA 609
                  +    + P   +   +   L K G   EA A+ +R +    VP  A
Sbjct: 746 AFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSA 798



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 110/482 (22%), Positives = 184/482 (38%), Gaps = 49/482 (10%)

Query: 89  MEALKSNPNFSHNQSTLHALATVLAKSQRNHE--LKTLIGDISSSKFLNVSVNFMNLMQW 146
           M   K  P FS   + + A + V      NH   + TL   +    +      F  L++ 
Sbjct: 159 MRKFKFRPAFSAYTTLIGAFSAV------NHSDMMLTLFQQMQELGYEPTVHLFTTLIRG 212

Query: 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206
           ++  G ++  LS  +E +  +       YN+ +  + K GK   A + F ++   G  P+
Sbjct: 213 FAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPD 272

Query: 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
             TYT MI  L    +LD A+E+F  L   R    +  Y  ++ G+    +FDEA SLL 
Sbjct: 273 EVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLE 332

Query: 267 EMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDEN 325
             R  G  P   A    L  +++MG +  A     EM  D    N+  Y           
Sbjct: 333 RQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKKDA-APNLSTY----------- 380

Query: 326 DDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF---VWTTRLVCKVLRH 382
                             +D    A  LD  + E+   +  A     V T  ++   L  
Sbjct: 381 ---------------NILIDMLCRAGKLD-CAFELRDSMQKAGLFPNVRTVNIMVDRLCK 424

Query: 383 FKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAK-LRSDGMRLPF 441
            +  + A   F  + Y+   T D      ++  L + G V+   ++  K L SD      
Sbjct: 425 SQKLDEACAIFEQMDYKV-CTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSI 483

Query: 442 STIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAI 500
               LI +F+   +K D   K + D     C P     L LL ++ +  + K        
Sbjct: 484 VYTSLIKNFFNHGRKEDGH-KIYKDMVNQNCSP----DLQLL-NTYMDCMFKAGEPEKGR 537

Query: 501 NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
            + EE+     VPD +++S L++     G      +LF  +++ G   D   + ++I  +
Sbjct: 538 AMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGF 597

Query: 561 CK 562
           CK
Sbjct: 598 CK 599



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/296 (20%), Positives = 111/296 (37%), Gaps = 43/296 (14%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
           W P   + L+   F      V  VLR  K    A  +F W   +    H   +   +L +
Sbjct: 48  WGPSAENALSALNFKPQPEFVIGVLRRLKDVNRAIEYFRWYERRTELPHCPESYNSLLLV 107

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFST-IRLIIDFYGISKKADA-----------ALKA 463
           +AR  + + +D+++ ++   G     +T I +++     +K  +               A
Sbjct: 108 MARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLSCVKANKLREGFDVVQNMRKFKFRPA 167

Query: 464 FHDDRTLCGPISKFK---LML----------------LYSSLLRTLTKCKRDFDAINVLE 504
           F    TL G  S      +ML                L+++L+R   K  R   A+++L+
Sbjct: 168 FSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLD 227

Query: 505 EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK-- 562
           EM  S +  D+  ++  +  F   G   +  K F  +  NG++PD   +  +I   CK  
Sbjct: 228 EMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKAN 287

Query: 563 ----------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
                     +L  +  +P       +       G+  EA ++ ER      +PS+
Sbjct: 288 RLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSV 343



 Score = 45.4 bits (106), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 1/191 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A  I+E L      + N  T ++L   L K++  +E       +   K     V +  
Sbjct: 674 DEAYLILEELMQK-GLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGI 732

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+               W E +++    ST SY  ++S  AK G   EA   F +    G
Sbjct: 733 LINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANG 792

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +P+S  Y  MIE L N  +   A  +F       +   +K  ++L++     +  ++A 
Sbjct: 793 GVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLHIHNKTCVVLLDTLHKNDCLEQAA 852

Query: 263 SLLNEMRDDGK 273
            +   +R+ GK
Sbjct: 853 IVGAVLRETGK 863


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 123/593 (20%), Positives = 248/593 (41%), Gaps = 46/593 (7%)

Query: 51  RSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTL 105
           R +S+ SL   +    LD  IV +     +       D A      +++N     ++ T 
Sbjct: 218 RVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEAN-GLKPDEVTY 276

Query: 106 HALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQ 165
            ++  VL K+ R  E   +   +  ++ +  +  +  ++  Y ++G  +   S     R 
Sbjct: 277 TSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRA 336

Query: 166 RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
           +  + S  +YN +++   K GK  EA++ F ++  + A PN  TY ++I+ L   GKLD+
Sbjct: 337 KGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAA-PNLSTYNILIDMLCRAGKLDT 395

Query: 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-E 284
           A E+  ++    +    +   I+V+     ++ DEA ++  EM      P      +L +
Sbjct: 396 AFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLID 455

Query: 285 RMQEMGFIQGANEFLREML-PDKRIKNVRY-------YEDGSDDDEDENDDNNSGVRIAY 336
            + ++G +  A +   +ML  D R  ++ Y       +  G  +D  +   +      + 
Sbjct: 456 GLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSP 515

Query: 337 GVQL-KPWLDPKALANTLDEWSPEVVSLLADAKFVWTTR----LVCKVLRHFKSPETAWH 391
            +QL   ++D    A   ++       + A  +FV   R    L+  +++   + ET   
Sbjct: 516 DLQLLNTYMDCMFKAGEPEKGRAMFEEIKA-RRFVPDARSYSILIHGLIKAGFANETYEL 574

Query: 392 FFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY 451
           F  +   + G   D  A   ++    + G V    +L+ ++++ G      T   +ID  
Sbjct: 575 F--YSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGL 632

Query: 452 GISKKADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSG 510
               + D A   F + ++      + +L +++YSSL+    K  R  +A  +LEE++  G
Sbjct: 633 AKIDRLDEAYMLFEEAKS-----KRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKG 687

Query: 511 IVPDVQTFSGLMYHFALQGDEKIVQKL--FSMVRQNGVEPDAYMFKVLIQAYCKY----- 563
           + P++ T++ L+   AL   E+I + L  F  +++    P+   + +LI   CK      
Sbjct: 688 LTPNLYTWNSLLD--ALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNK 745

Query: 564 -------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA 609
                  +    + P   +   +   L K G   EA A+ +R +    VP  A
Sbjct: 746 AFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSA 798



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 110/484 (22%), Positives = 185/484 (38%), Gaps = 47/484 (9%)

Query: 86  LSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHE--LKTLIGDISSSKFLNVSVNFMNL 143
           + +M   K  P FS   + + A + V      NH   + TL   +    +      F  L
Sbjct: 156 VQMMRKFKFRPAFSAYTTLIGAFSAV------NHSDMMLTLFQQMQELGYEPTVHLFTTL 209

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
           ++ ++  G ++  LS  +E +  +       YN+ +  + K GK   A + F ++   G 
Sbjct: 210 IRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGL 269

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
            P+  TYT MI  L    +LD A+E+F  L   R    +  Y  ++ G+    +FDEA S
Sbjct: 270 KPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYS 329

Query: 264 LLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDE 322
           LL   R  G  P   A    L  +++MG +  A +   EM  D    N+  Y        
Sbjct: 330 LLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDA-APNLSTY-------- 380

Query: 323 DENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF--VWTTRLVCKVL 380
                                +D    A  LD       S+     F  V T  ++   L
Sbjct: 381 ------------------NILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRL 422

Query: 381 RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAK-LRSDGMRL 439
              +  + A   F  + Y+   T D      ++  L + G V+   ++  K L SD    
Sbjct: 423 CKSQKLDEACAMFEEMDYKV-CTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTN 481

Query: 440 PFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD 498
                 LI +F+   +K D   K + D     C P     L LL ++ +  + K      
Sbjct: 482 SIVYTSLIKNFFNHGRKEDGH-KIYKDMINQNCSP----DLQLL-NTYMDCMFKAGEPEK 535

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
              + EE+     VPD +++S L++     G      +LF  +++ G   D   + ++I 
Sbjct: 536 GRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVID 595

Query: 559 AYCK 562
            +CK
Sbjct: 596 GFCK 599



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/296 (20%), Positives = 111/296 (37%), Gaps = 43/296 (14%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
           W P   + L+   F      V  VLR  K    A  +F W   +    H   +   +L +
Sbjct: 48  WGPSAENTLSALSFKPQPEFVIGVLRRLKDVNRAIEYFRWYERRTELPHCPESYNSLLLV 107

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFST-IRLIIDFYGISKKADAA-----------LKA 463
           +AR  + + +D+++ ++   G     +T I +++     +K  +               A
Sbjct: 108 MARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPA 167

Query: 464 FHDDRTLCGPISKFK---LML----------------LYSSLLRTLTKCKRDFDAINVLE 504
           F    TL G  S      +ML                L+++L+R   K  R   A+++L+
Sbjct: 168 FSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLD 227

Query: 505 EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK-- 562
           EM  S +  D+  ++  +  F   G   +  K F  +  NG++PD   +  +I   CK  
Sbjct: 228 EMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKAN 287

Query: 563 ----------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
                     +L  +  +P       +       G+  EA ++ ER      +PS+
Sbjct: 288 RLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSV 343



 Score = 46.2 bits (108), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 104/531 (19%), Positives = 203/531 (38%), Gaps = 42/531 (7%)

Query: 78  SAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVS 137
           SA   D A S++E  ++  +   +    + + T L K  +  E   +  ++      N+S
Sbjct: 320 SAGKFDEAYSLLERQRAKGSIP-SVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLS 378

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
             +  L+     +G L+      +  ++     +  + NI++    K+ K  EA   F +
Sbjct: 379 T-YNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEE 437

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +  +   P+  T+  +I+ L  +G++D A +V+  +     +  S  Y  L++ F    R
Sbjct: 438 MDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGR 497

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDG 317
            ++   +  +M +    P   +   L    +  F  G  E  R M  +  IK  R+  D 
Sbjct: 498 KEDGHKIYKDMINQNCSPDLQL---LNTYMDCMFKAGEPEKGRAMFEE--IKARRFVPDA 552

Query: 318 SD-----DDEDENDDNNSGVRIAYGVQLKPW-LDPKALANTLDEWSP-----EVVSLLAD 366
                      +    N    + Y ++ +   LD +A    +D +       +   LL +
Sbjct: 553 RSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEE 612

Query: 367 AKF------VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHG 420
            K       V T   V   L      + A+  F   A       +V     ++    + G
Sbjct: 613 MKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLF-EEAKSKRIELNVVIYSSLIDGFGKVG 671

Query: 421 HVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFKL 479
            ++    ++ +L   G+     T   ++D    +++ + AL  F   + L C P      
Sbjct: 672 RIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQ---- 727

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
            + Y  L+  L K ++   A    +EM   G+ P   +++ ++   A  G+      LF 
Sbjct: 728 -VTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFD 786

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRK 590
             + NG  PD+  +  +I+     LSN N   DA        SL++E RR+
Sbjct: 787 RFKANGGVPDSACYNAMIEG----LSNGNRAMDAF-------SLFEETRRR 826



 Score = 45.4 bits (106), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 1/191 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A  I+E L      + N  T ++L   L K++  +E       +   K     V +  
Sbjct: 674 DEAYLILEELMQK-GLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGI 732

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+               W E +++    ST SY  ++S  AK G   EA   F +    G
Sbjct: 733 LINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANG 792

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +P+S  Y  MIE L N  +   A  +F       +   +K  ++L++     +  ++A 
Sbjct: 793 GVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKNDCLEQAA 852

Query: 263 SLLNEMRDDGK 273
            +   +R+ GK
Sbjct: 853 IVGAVLRETGK 863


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 119/555 (21%), Positives = 212/555 (38%), Gaps = 82/555 (14%)

Query: 69  PFIVTHALRSAPNADSALSIME-ALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD 127
           P IV   + S  +A  AL+    A  S P FSH   + ++L  VL + +++ E     GD
Sbjct: 43  PRIVGRVVNSLKDAKLALAFFRWAPASIPGFSHTAFSWNSLLQVLVRCKKHRE----AGD 98

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           +  S+ L             S   D+                    SYNIV+S +   G 
Sbjct: 99  LFRSELL------------ASCEPDVC-------------------SYNIVISGFCNAGD 127

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
              A+E   ++   G  P++ T+T +I  + N G LD A++   +   M        Y  
Sbjct: 128 LHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRS---MGCDPNVVTYTA 184

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDK 306
           L+  F   ++ +EA  LL EMR+ G  P      V ++ + ++  +  A + +++M+   
Sbjct: 185 LIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGG 244

Query: 307 RIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLAD 366
              NV  +    D      + +++  R   G+ +   + P  +      +S  +  L   
Sbjct: 245 FAPNVMTFNSLVDGFCKRGNVDDA--RKLLGIMVAKGMRPNVVT-----YSALIDGLCKS 297

Query: 367 AKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVD 426
            KF+       +VL   K+               G T D +    ++  L +   +E  +
Sbjct: 298 QKFLEAK----EVLEEMKT--------------RGVTPDAFTYSALIHGLCKADKIEEAE 339

Query: 427 RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSL 486
           +++ ++   G          II  +  S K   A K   + R       K   ++ Y+++
Sbjct: 340 QMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQ----RKSPDVVTYNTV 395

Query: 487 LRTLTKCKRDFDAINVLEEMIFSG-IVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
           +  L K  +  +A  +LE+M  SG ++PDV T+S ++            QKL   + + G
Sbjct: 396 IDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAG 455

Query: 546 VEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
             PD   +  +I   CK             +  +   P+  T   L   L K  +  EA 
Sbjct: 456 CNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAE 515

Query: 594 AVEERCEKINDVPSL 608
            V E        P+L
Sbjct: 516 RVMEEMRNAGCPPNL 530



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 20/198 (10%)

Query: 372 TTRLVCKVLRHFKSPETAWHFFCWV-AYQPGYTHDVYALEKMLTILAR-HGHVELVD--- 426
           T R+V +V+   K  + A  FF W  A  PG++H  ++   +L +L R   H E  D   
Sbjct: 42  TPRIVGRVVNSLKDAKLALAFFRWAPASIPGFSHTAFSWNSLLQVLVRCKKHREAGDLFR 101

Query: 427 -RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSS 485
             L+A    D       +  ++I  +  +    AAL+   + ++     + F       +
Sbjct: 102 SELLASCEPD-----VCSYNIVISGFCNAGDLHAALELLEEMKS-----AGFAPDAFTHT 151

Query: 486 LLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544
            + T      D D A++ L  M   G  P+V T++ L+  FA     +   KL   +R+ 
Sbjct: 152 PIITAMANAGDLDGAMDHLRSM---GCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRER 208

Query: 545 GVEPDAYMFKVLIQAYCK 562
           G  P+   + VL+ A CK
Sbjct: 209 GCPPNLVTYNVLVDALCK 226


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 110/555 (19%), Positives = 219/555 (39%), Gaps = 85/555 (15%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           V   L+S  +   ALS   ++   P   H   T + +   L    +  ++  +  +    
Sbjct: 92  VLGVLKSMTDPIRALSYFYSISEFPTVLHTTETCNFMLEFLRVHDKVEDMAAVF-EFMQK 150

Query: 132 KFLNVSVN-FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           K +   ++ ++ + +  S  G L  + +  N+ R+   +L+  SYN ++ +  ++G   E
Sbjct: 151 KIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGE 210

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR---IKRTSKQYLI 247
           A+E +R+++ EG  P+ +TY+ +   +V LGK   +  V   L  M    ++     + I
Sbjct: 211 ALEVYRRMVSEGLKPSLKTYSAL---MVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTI 267

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDK 306
            +       + DEA  +   M D+G  P      V ++ +   G ++ A E   +M  + 
Sbjct: 268 CIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANG 327

Query: 307 RIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLAD 366
              +   Y    D   D  D +            + W   +A     D + P+VV+    
Sbjct: 328 HKPDQVIYITLLDKFNDFGDLDTFK---------EFWSQMEA-----DGYMPDVVT---- 369

Query: 367 AKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVD 426
             F     ++CK  R F      +     V  + G   +++    ++  L R G +E   
Sbjct: 370 --FTILVDVLCKA-RDFDEAFATFD----VMRKQGILPNLHTYNTLICGLLRAGRIEDAL 422

Query: 427 RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSL 486
           +L+  + S G++    T  + ID++G S +   A++ F                      
Sbjct: 423 KLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETF---------------------- 460

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
                            E+M   GIVP++   +  +Y  A  G  +  + +F+ +R+NG+
Sbjct: 461 -----------------EKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGL 503

Query: 547 EPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAA 594
            PD+  + ++++ Y K             +  +   PD      L  SL+K GR  EA  
Sbjct: 504 APDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQ 563

Query: 595 VEERCEKINDVPSLA 609
           + +R + +   P++ 
Sbjct: 564 MFDRMKDMKLSPTVV 578



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 127/300 (42%), Gaps = 38/300 (12%)

Query: 174  SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
            ++N++++V+ K+GK  E  E ++++I     P++ TY ++I  L     LD AL+ F  L
Sbjct: 825  TFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDL 884

Query: 234  PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFI 292
                 + T + Y  L++G   V R +EA  L  EM D G  P  A+  + +    ++G  
Sbjct: 885  VSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDT 944

Query: 293  QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPW---LDPKAL 349
            + A +  + M+                         N G+R      LK +   +D   L
Sbjct: 945  ETACQLFKRMV-------------------------NEGIR----PDLKSYTILVDCLCL 975

Query: 350  ANTLDE---WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDV 406
            A  +DE   +  E+ S   D  F+   R++   L   +  E A   +  +  + G   D+
Sbjct: 976  AGRVDEALYYFNELKSTGLDPDFIAYNRII-NGLGKSQRMEEALALYNEMRNR-GIVPDL 1033

Query: 407  YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD 466
            Y    ++  L   G VE   R+  +L+  G+     T   +I  Y +S+  + A   + +
Sbjct: 1034 YTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKN 1093



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 83/172 (48%)

Query: 104  TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
            T + + + LAKS    +      D+ SS F      +  L+   +  G LE  +  + E 
Sbjct: 860  TYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEM 919

Query: 164  RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
                   +   +NI+++ Y K G    A + F+++++EG  P+ ++YT++++ L   G++
Sbjct: 920  SDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRV 979

Query: 224  DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            D AL  F+ L    +      Y  ++ G    +R +EA +L NEMR+ G  P
Sbjct: 980  DEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVP 1031



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 120/595 (20%), Positives = 223/595 (37%), Gaps = 88/595 (14%)

Query: 85   ALSIMEALKSN---PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
            A+   E +K+    PN     ++L++LA +     R  E KT+   +  +     SV + 
Sbjct: 456  AVETFEKMKAKGIVPNIVACNASLYSLAEM----GRLREAKTMFNGLRENGLAPDSVTYN 511

Query: 142  NLMQWYSTSGDLELVLSTWNEY---------------------------------RQRAK 168
             +M+ YS  G ++  ++  +E                                  R +  
Sbjct: 512  MMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDM 571

Query: 169  LLSTE--SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
             LS    +YN ++S   K G+  +A+E F  +I++   PN+ ++  +++      +++ A
Sbjct: 572  KLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELA 631

Query: 227  LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERM 286
            L++FS + +M  K     Y  ++ G +   + + A    ++++         +   L  +
Sbjct: 632  LKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKSMHPDHVTICTLLPGL 691

Query: 287  QEMGFIQGANEFLREMLPDKRIK-NVRYYED--GSDDDEDENDDNNSGVRIAYGVQL--- 340
             + G I  A    R+ +   R + N  ++ED  G    E E D       I +  +L   
Sbjct: 692  VKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDK-----AIIFAEELVLN 746

Query: 341  -----KPWLDPKALANTLDEWSPEVVSLLADAKF---------VWTTRLVCKVLRHFKSP 386
                   +L P  L   L +   E+ +     KF         + +   +   L      
Sbjct: 747  GICREDSFLIP--LVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYT 804

Query: 387  ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
            E AW  F  +    G   D +    +L +  + G +  +  L  ++ S   +    T  +
Sbjct: 805  EKAWDLFKDMK-NVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNI 863

Query: 447  IIDFYGISKKADAALKAFHDDRTLCGPISKFKLM-LLYSSLLRTLTKCKRDFDAINVLEE 505
            +I     S   D AL  F+D  +     S F+     Y  L+  L K  R  +A+ + EE
Sbjct: 864  VISSLAKSNNLDKALDFFYDLVS-----SDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEE 918

Query: 506  MIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC---- 561
            M   G  P+   F+ L+  +   GD +   +LF  +   G+ PD   + +L+   C    
Sbjct: 919  MSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGR 978

Query: 562  --------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
                      L ++ L PD      +   L K  R +EA A+         VP L
Sbjct: 979  VDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDL 1033



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 77/144 (53%), Gaps = 4/144 (2%)

Query: 417  ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK 476
             + G  E   +L  ++ ++G+R    +  +++D   ++ + D AL  F++ ++  G    
Sbjct: 939  GKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKST-GLDPD 997

Query: 477  FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
            F   + Y+ ++  L K +R  +A+ +  EM   GIVPD+ T++ LM +  L G  +  ++
Sbjct: 998  F---IAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKR 1054

Query: 537  LFSMVRQNGVEPDAYMFKVLIQAY 560
            ++  ++  G+EPD + +  LI+ Y
Sbjct: 1055 MYEELQLAGLEPDVFTYNALIRGY 1078



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 101/247 (40%), Gaps = 7/247 (2%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I    L  A   D A  I   +  +     +  T   L   L  + +    K L   + +
Sbjct: 267 ICIRVLGRAGKIDEAYEIFRRM-DDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKA 325

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           +      V ++ L+  ++  GDL+     W++      +    ++ I++ V  K     E
Sbjct: 326 NGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDE 385

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A  TF  +  +G +PN  TY  +I  L+  G+++ AL++   +  + ++ T+  Y I ++
Sbjct: 386 AFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFID 445

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEF---LRE--MLP 304
            F       +A     +M+  G  P   A   +L  + EMG ++ A      LRE  + P
Sbjct: 446 YFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAP 505

Query: 305 DKRIKNV 311
           D    N+
Sbjct: 506 DSVTYNM 512



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/241 (20%), Positives = 102/241 (42%), Gaps = 10/241 (4%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+   L  A + D A +  + ++       N  T + L   L ++ R  +   L+G + S
Sbjct: 372 ILVDVLCKARDFDEAFATFDVMRKQ-GILPNLHTYNTLICGLLRAGRIEDALKLLGTMES 430

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                 +  +   + ++  SG+    + T+ + + +  + +  + N  +   A+ G+  E
Sbjct: 431 VGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLRE 490

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A   F  + + G  P+S TY +M++    +G++D A+ + S +    I+   +  +I+V 
Sbjct: 491 AKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEM----IRNGCEPDVIVVN 546

Query: 251 GFVG----VERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPD 305
             +       R DEA  + + M+D    P        L  + + G +Q A E    M+  
Sbjct: 547 SLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEK 606

Query: 306 K 306
           K
Sbjct: 607 K 607


>gi|356520989|ref|XP_003529141.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Glycine max]
          Length = 682

 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 109/509 (21%), Positives = 202/509 (39%), Gaps = 59/509 (11%)

Query: 64  DRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT 123
           + LL+ F+ +H    A N        EA + +PN      T + L  V+ K     + + 
Sbjct: 117 NTLLNAFVESHQWARAENF---FKYFEAARVSPNVE----TYNVLMKVMCKKGEFEKGRG 169

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L+  +  +      + +  L+   + SGDL   L  ++E R+R        YN+++  + 
Sbjct: 170 LLTWMWGAGMSPDRITYGTLIGGVAKSGDLGFALEVFDEMRERGVEPDVVCYNMIIDGFF 229

Query: 184 KTGKNFEAVETFRQVI-DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
           K G   +A E + +++ +E   P+  +Y VMI  L   G+    LE++      R+K+  
Sbjct: 230 KRGDFVKAGEMWERLLREELVFPSVVSYNVMISGLCKCGRFSEGLEIWE-----RMKKNE 284

Query: 243 KQ-----YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA-LERMQEMGFIQGAN 296
           ++     Y  L+ G         A+ +  EM   G  P      A L  + + G ++   
Sbjct: 285 RKCDLFTYSALIHGLSEAGDLGGARKVYEEMVGRGVRPDVVTCNAMLNGLCKAGNVEECF 344

Query: 297 EFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEW 356
           E   EM     ++NVR                      +Y + LK   +   + + +  W
Sbjct: 345 ELWEEM-GKCSLRNVR----------------------SYNIFLKGLFENGKVDDAMMLW 381

Query: 357 SPEVVSLLAD-AKFVWTTRLVC---KVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
                 L AD A +      +C    V R  +  E A H       + G   D +A   +
Sbjct: 382 DG---LLEADSATYGVVVHGLCWNGYVNRALQVLEEAEH------REGGMDVDEFAYSSL 432

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
           +  L + G ++  D ++  +   G +       ++ID +    K D+A+K F   R + G
Sbjct: 433 INALCKEGRLDEADGVVELMNKRGCKFNSHVCNVLIDGFVKHSKLDSAVKVF---REMSG 489

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
                 + + Y+ L+  L + +R  +A + + EM+  G  PD+ T+S L+          
Sbjct: 490 KGCSLTV-VSYNILINGLLRAERFREAYDCVNEMLEKGWKPDIITYSTLIGGLYESNMMD 548

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
              +L+      G +PD  M+ ++I   C
Sbjct: 549 AALRLWHQFLDTGHKPDIIMYNIVIHRLC 577



 Score = 45.8 bits (107), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 15/133 (11%)

Query: 483 YSSLLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
           Y+ L++ + K K +F+    +L  M  +G+ PD  T+  L+   A  GD     ++F  +
Sbjct: 151 YNVLMKVMCK-KGEFEKGRGLLTWMWGAGMSPDRITYGTLIGGVAKSGDLGFALEVFDEM 209

Query: 542 RQNGVEPDAYMFKVLIQAYCK-------------YLSNSNLMPDAATKELLKKSLWKEGR 588
           R+ GVEPD   + ++I  + K              L    + P   +  ++   L K GR
Sbjct: 210 RERGVEPDVVCYNMIIDGFFKRGDFVKAGEMWERLLREELVFPSVVSYNVMISGLCKCGR 269

Query: 589 RKEAAAVEERCEK 601
             E   + ER +K
Sbjct: 270 FSEGLEIWERMKK 282



 Score = 43.5 bits (101), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 3/165 (1%)

Query: 398 YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA 457
           +  G + D      ++  +A+ G +     +  ++R  G+        +IID  G  K+ 
Sbjct: 175 WGAGMSPDRITYGTLIGGVAKSGDLGFALEVFDEMRERGVEPDVVCYNMIID--GFFKRG 232

Query: 458 DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
           D        +R L   +  F  ++ Y+ ++  L KC R  + + + E M  +    D+ T
Sbjct: 233 DFVKAGEMWERLLREELV-FPSVVSYNVMISGLCKCGRFSEGLEIWERMKKNERKCDLFT 291

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           +S L++  +  GD    +K++  +   GV PD      ++   CK
Sbjct: 292 YSALIHGLSEAGDLGGARKVYEEMVGRGVRPDVVTCNAMLNGLCK 336


>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Glycine max]
          Length = 642

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 104/452 (23%), Positives = 203/452 (44%), Gaps = 45/452 (9%)

Query: 139 NFMNLMQWYSTS----GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
           NF+ + + Y  +      ++L    W E++ +    + +S+N V++V  + G    A+E 
Sbjct: 98  NFIVMFKAYGKAHLPEKAVDLFHRMWGEFQCKQ---TVKSFNSVLNVIVQEGLFNRALEF 154

Query: 195 FRQVIDEGAI---PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
           +  V+   ++   PN+ T+ ++I+ +  LG +D A+EVF  +PL      +  Y  L+ G
Sbjct: 155 YNHVVASKSLNIHPNALTFNLVIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHG 214

Query: 252 FVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGA-----NEFLREMLPD 305
               ER DEA SLL+EM+ +G FP   A  V +  + + G +  A     N FL+  +P+
Sbjct: 215 LCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPN 274

Query: 306 KRIKNVRYYEDGSDDDEDEN----DDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVV 361
           +   N   +        ++     +   S   +   V     ++   +     + +  +V
Sbjct: 275 EVTYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLV 334

Query: 362 SLLADA----KFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
           SL A      ++V+++ +  +CK  + F      W     V    G    VY+   ++  
Sbjct: 335 SLEARGHRGNEYVYSSLISGLCKEGK-FNQAMELWKEM--VGKGCGPNTIVYS--ALIDG 389

Query: 416 LARHGHVELVDRLIAKLRSDGMRLP--FSTIRLIIDFY--GISKKADAALKAFHDDRTLC 471
           L R G ++     ++++++ G  LP  F+   L+  ++  G S KA    K   ++  + 
Sbjct: 390 LCREGKLDEARGFLSEMKNKGY-LPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIH 448

Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
             +        YS L+  L K  +  +A+ V ++M+  GI  DV  +S +++ F      
Sbjct: 449 NEVC-------YSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLV 501

Query: 532 KIVQKLFSMVRQNG--VEPDAYMFKVLIQAYC 561
           +   KLF+ +   G  V+PD   + +L+ A+C
Sbjct: 502 EQGLKLFNQMLCQGPVVQPDVITYNILLNAFC 533



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 94/209 (44%), Gaps = 8/209 (3%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N     AL   L +  +  E +  + ++ +  +L  S  + +LM+ Y  +GD    +  W
Sbjct: 379 NTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVW 438

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            E      + +   Y+I+++   K GK  EA+  ++Q++  G   +   Y+ MI    N 
Sbjct: 439 KEMANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNA 498

Query: 221 GKLDSALEVFSAL----PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
             ++  L++F+ +    P+++    +  Y IL+  F   +    A  +LN M D G  P 
Sbjct: 499 NLVEQGLKLFNQMLCQGPVVQPDVIT--YNILLNAFCIQKSIFRAIDILNIMLDQGCDPD 556

Query: 277 R-AMRVALERMQE-MGFIQGANEFLREML 303
                + L+ ++E M   Q   EFL E++
Sbjct: 557 FITCDIFLKTLRENMNPPQDGREFLDELV 585



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 83/217 (38%), Gaps = 3/217 (1%)

Query: 89  MEALKSNP--NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQW 146
           +E  +  P  N + +  T   L   L K +R  E  +L+ ++         V F  L+  
Sbjct: 190 IEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISA 249

Query: 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206
               GDL       +    +  + +  +YN ++      GK  +AV    Q++    +PN
Sbjct: 250 LCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPN 309

Query: 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
             T+  +I   V  G+      V  +L     +     Y  L+ G     +F++A  L  
Sbjct: 310 DVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWK 369

Query: 267 EMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREM 302
           EM   G  P   +  AL + +   G +  A  FL EM
Sbjct: 370 EMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEM 406



 Score = 45.4 bits (106), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 8/168 (4%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG---DLELVL 157
           N+ T +AL   L    +  +  +L+  + S+K +   V F  L+  +   G   D   VL
Sbjct: 274 NEVTYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVL 333

Query: 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217
            +      R    +   Y+ ++S   K GK  +A+E +++++ +G  PN+  Y+ +I+ L
Sbjct: 334 VSLEARGHRG---NEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGL 390

Query: 218 VNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL 265
              GKLD A    S +        S  Y  L+ G+   E  D  K++L
Sbjct: 391 CREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGY--FEAGDSHKAIL 436



 Score = 42.4 bits (98), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 12/126 (9%)

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
           +YSSL+  L K  +   A+ + +EM+  G  P+   +S L+     +G     +   S +
Sbjct: 347 VYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEM 406

Query: 542 RQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRR 589
           +  G  P+++ +  L++ Y             K ++N+N + +     +L   L K+G+ 
Sbjct: 407 KNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKF 466

Query: 590 KEAAAV 595
            EA  V
Sbjct: 467 MEALMV 472



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 21/143 (14%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS+L+  L K +R  +A+++L+EM   G  P++  F+ L+     +GD     KL   + 
Sbjct: 208 YSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMF 267

Query: 543 QNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRK 590
             G  P+   +  L+   C              + ++  +P+  T   L      +GR  
Sbjct: 268 LKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRAS 327

Query: 591 EAAAVEERCEKINDVPSLALRGH 613
           +   V         + SL  RGH
Sbjct: 328 DGTRV---------LVSLEARGH 341


>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 653

 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 100/435 (22%), Positives = 187/435 (42%), Gaps = 74/435 (17%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVI---DEGAIPNSRTYTVMIEHLVNLGKLDSAL 227
           + +S+N V++V  + G +  A+E +  V+   D   +PN  ++ ++I+ +  LG +D+A+
Sbjct: 142 TVKSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNILPNVLSFNLIIKSMCKLGLVDNAI 201

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA-MRVALERM 286
           E+F  +P+ +    +  Y  L++G   V+R DEA SLL+EM+ +G FP  A   V +  +
Sbjct: 202 ELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDEMQIEGCFPSPATFNVLINGL 261

Query: 287 QEMGFIQGA-----NEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLK 341
            + G          N FL+  +P++   N                       + +G+ LK
Sbjct: 262 CKKGDFTRVTKLVDNMFLKGCVPNEVTYNT----------------------LIHGLCLK 299

Query: 342 PWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPG 401
             LD KAL+  LD     V S     +  + T ++  +++  ++ + A      +  + G
Sbjct: 300 GKLD-KALS-LLDRM---VSSKCVPNEVTYGT-IINGLVKQGRALDGARVLV--LMEERG 351

Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL 461
           Y  + Y    +++ L + G  E   RL  +    G +L       ++D     +K D A+
Sbjct: 352 YIVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAM 411

Query: 462 KAFHD--DRTLCGP---------------------ISKFKLM---------LLYSSLLRT 489
           K   +  D+  C P                     I  +K M         + YS L+  
Sbjct: 412 KILSEMTDKG-CAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHG 470

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS--MVRQNGVE 547
           L K  +  +A+ V  +M+ +G  PDV  +S ++      G  +   KL++  +  +   +
Sbjct: 471 LCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNEMLCLEPDSQ 530

Query: 548 PDAYMFKVLIQAYCK 562
           PD   + +L  A CK
Sbjct: 531 PDVITYNILFNALCK 545



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 81/193 (41%), Gaps = 1/193 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A+S+++ ++    F  + +T + L   L K      +  L+ ++     +   V +  
Sbjct: 233 DEAVSLLDEMQIEGCFP-SPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNT 291

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+      G L+  LS  +       + +  +Y  +++   K G+  +       + + G
Sbjct: 292 LIHGLCLKGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERG 351

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            I N   Y+V++  L   GK + A+ +F        K  +  Y  LV+G     + DEA 
Sbjct: 352 YIVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAM 411

Query: 263 SLLNEMRDDGKFP 275
            +L+EM D G  P
Sbjct: 412 KILSEMTDKGCAP 424



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 16/138 (11%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y +L+  L K  R  +A+++L+EM   G  P   TF+ L+     +GD   V KL   + 
Sbjct: 219 YCTLMDGLCKVDRIDEAVSLLDEMQIEGCFPSPATFNVLINGLCKKGDFTRVTKLVDNMF 278

Query: 543 QNGVEPDAYMFKVLIQAYC------KYLS------NSNLMPDAATKELLKKSLWKEGRRK 590
             G  P+   +  LI   C      K LS      +S  +P+  T   +   L K+GR  
Sbjct: 279 LKGCVPNEVTYNTLIHGLCLKGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRAL 338

Query: 591 EAAAV----EERCEKIND 604
           + A V    EER   +N+
Sbjct: 339 DGARVLVLMEERGYIVNE 356



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 48/246 (19%), Positives = 102/246 (41%), Gaps = 5/246 (2%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + H L      D ALS+++ + S+     N+ T   +   L K  R  +   ++  +   
Sbjct: 292 LIHGLCLKGKLDKALSLLDRMVSSKCVP-NEVTYGTIINGLVKQGRALDGARVLVLMEER 350

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
            ++     +  L+      G  E  +  + E   +   L+T  Y+ ++    +  K  EA
Sbjct: 351 GYIVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEA 410

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
           ++   ++ D+G  PN+ T++ +++    +G    A+EV+  +  +        Y +L+ G
Sbjct: 411 MKILSEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHG 470

Query: 252 FVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREML---PDKR 307
                +  EA  +  +M   G  P   A    ++ + + G ++ A +   EML   PD +
Sbjct: 471 LCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNEMLCLEPDSQ 530

Query: 308 IKNVRY 313
              + Y
Sbjct: 531 PDVITY 536


>gi|297832318|ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 874

 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 121/529 (22%), Positives = 220/529 (41%), Gaps = 48/529 (9%)

Query: 56  NSLSS--LLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLA 113
           NS+ S  +L ++++   IV+   R   N DS   ++E ++       +  T ++  + L 
Sbjct: 206 NSMESFGVLPNKVVYNTIVSSFCREGRNDDSE-KLVEKMREE-GLVPDIVTFNSRISALC 263

Query: 114 KSQRNHELKTLIGDISSSKFLNV----SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKL 169
           K  +  +   +  D+   ++L +    S+ +  +++ +   G LE   + +   R+   L
Sbjct: 264 KEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDL 323

Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           +S +SYNI +    + GK  EA    +Q+ID+G  P+  +Y ++++ L  LG L  A  +
Sbjct: 324 VSLQSYNIWLQGLVRHGKFIEAETVLKQMIDKGIGPSIYSYNILMDGLCKLGMLSDAKTI 383

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQE 288
              +    +   +  Y  L+ G+  V + D AKSLL EM  +   P      + L  +  
Sbjct: 384 VGLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWN 443

Query: 289 MGFIQGANEFLREMLPDKRIKNVRYYEDGSD--------DDEDENDDNNSGVRIAYGVQL 340
           MG I  A E LR+M       N + Y  G D        D    + + +  + I  G+++
Sbjct: 444 MGRISEAEELLRKM-------NEKGY--GLDTVTCNIIVDGLCGSGELDKAIEIVKGMRV 494

Query: 341 KPWLDPKALANTLDEWSPEVVSLLADAK-----FVWTTRL--VCKVLRHFKSPETAWHFF 393
                  AL N  + +   V   L +         ++T L  +CK  R F   +T +   
Sbjct: 495 H---GSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGR-FAEAKTLFAEM 550

Query: 394 CWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGI 453
                QP    D  A    +    + G +    R++  +   G      T   +I   GI
Sbjct: 551 MGEKLQP----DSLAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGI 606

Query: 454 SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP 513
            K     +    D+    G       +  Y++ ++ L +  +  DA N+L+EM+   I P
Sbjct: 607 -KNQIFEIHGLMDEMREKGISPN---ICTYNTAIQYLCEGGKVEDATNLLDEMMQKNIAP 662

Query: 514 DVQTFSGLMYHFALQGDEKIVQKLF-SMVRQNGVEPDAY--MFKVLIQA 559
           +V +F  L+  F    D  + Q++F + V   G +   Y  MF  L+ A
Sbjct: 663 NVFSFKYLIGAFCKVPDFDMAQEVFETAVSICGQKEGLYSLMFNELLAA 711



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 97/224 (43%), Gaps = 27/224 (12%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD---GMRLPFSTIRLIIDFYGISK 455
           + G   D+      ++ L + G V    R+ + +  D   G+  P S        Y +  
Sbjct: 245 EEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSIT------YNLML 298

Query: 456 KADAALKAFHDDRTLCGPISKFKLMLL---YSSLLRTLTKCKRDFDAINVLEEMIFSGIV 512
           K    +    D +TL   I +   ++    Y+  L+ L +  +  +A  VL++MI  GI 
Sbjct: 299 KGFCKVGLLEDAKTLFESIRENDDLVSLQSYNIWLQGLVRHGKFIEAETVLKQMIDKGIG 358

Query: 513 PDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC----------- 561
           P + +++ LM      G     + +  ++++NGV PDA  +  L+  YC           
Sbjct: 359 PSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSL 418

Query: 562 -KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND 604
            + +  +N +P+A T  +L  SLW  GR  EA   EE   K+N+
Sbjct: 419 LQEMMRNNCLPNAYTCNILLHSLWNMGRISEA---EELLRKMNE 459



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 110/252 (43%), Gaps = 22/252 (8%)

Query: 375 LVCKVLRHFKSPETAWHFFCWVAYQPGY-THDV--YALEKMLTILAR---HGHVELVDRL 428
           LV  +L++  +P  AW  F  +   P   +H +   A   M  IL R   H  +E +  L
Sbjct: 5   LVKALLKNTNNPRLAWRIFKRIFSSPSEESHGISLAATPTMACILVRAKMHEEIEELHNL 64

Query: 429 IAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLR 488
           I  L S   +   S++  ++  +  S   D A   F   R+   P +K  + L Y+ LL 
Sbjct: 65  I--LSSSIQKTKLSSLLSVVSIFAKSNHIDKAFPQFQFVRSRF-PENKPGIYL-YNVLLE 120

Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548
           +  + +R      + ++M+  GI P+  TF+ L+            ++LF  + + G +P
Sbjct: 121 SCIRERRVEFVSWLYKDMVLCGISPETYTFNLLIRALCDSSCVDAARELFDEMPEKGCKP 180

Query: 549 DAYMFKVLIQAYCKY--------LSNS----NLMPDAATKELLKKSLWKEGRRKEAAAVE 596
           + + F +L++ YCK         L NS     ++P+      +  S  +EGR  ++  + 
Sbjct: 181 NEFTFGILVRGYCKAGLTDKGLELLNSMESFGVLPNKVVYNTIVSSFCREGRNDDSEKLV 240

Query: 597 ERCEKINDVPSL 608
           E+  +   VP +
Sbjct: 241 EKMREEGLVPDI 252



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 115/559 (20%), Positives = 219/559 (39%), Gaps = 57/559 (10%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHA---LATVLAKSQRNHELKTLIGD 127
           +V   L++  N   A  I + + S+P+   +  +L A   +A +L +++ + E++ L   
Sbjct: 5   LVKALLKNTNNPRLAWRIFKRIFSSPSEESHGISLAATPTMACILVRAKMHEEIEELHNL 64

Query: 128 ISSSKFLNVSVN-FMNLMQWYSTSGDLELVLSTWNEYRQR--AKLLSTESYNIVMSVYAK 184
           I SS      ++  ++++  ++ S  ++     +   R R          YN+++    +
Sbjct: 65  ILSSSIQKTKLSSLLSVVSIFAKSNHIDKAFPQFQFVRSRFPENKPGIYLYNVLLESCIR 124

Query: 185 TGKNFEAVE-TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
             +  E V   ++ ++  G  P + T+ ++I  L +   +D+A E+F  +P    K    
Sbjct: 125 E-RRVEFVSWLYKDMVLCGISPETYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEF 183

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-----------------ERM 286
            + ILV G+      D+   LLN M   G  P + +   +                 E+M
Sbjct: 184 TFGILVRGYCKAGLTDKGLELLNSMESFGVLPNKVVYNTIVSSFCREGRNDDSEKLVEKM 243

Query: 287 QEMGFIQGA---NEFLREMLPDKRIKNV-RYYEDGSDDDEDENDDNNSGVRIAYGVQLKP 342
           +E G +      N  +  +  + ++ +  R + D   D+       NS   I Y + LK 
Sbjct: 244 REEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNS---ITYNLMLKG 300

Query: 343 WL------DPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRH--FKSPETAWHFFC 394
           +       D K L  ++ E + ++VSL   +  +W   LV    RH  F   ET      
Sbjct: 301 FCKVGLLEDAKTLFESIRE-NDDLVSL--QSYNIWLQGLV----RHGKFIEAETVLKQM- 352

Query: 395 WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS 454
                 G    +Y+   ++  L + G +     ++  ++ +G+     T   ++  Y   
Sbjct: 353 ---IDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPDAVTYGCLLHGYCSV 409

Query: 455 KKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP 513
            K DAA     +  R  C P +    +LL+S     L    R  +A  +L +M   G   
Sbjct: 410 GKVDAAKSLLQEMMRNNCLPNAYTCNILLHS-----LWNMGRISEAEELLRKMNEKGYGL 464

Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDA 573
           D  T + ++      G+     ++   +R +G      +    I      L  +N +PD 
Sbjct: 465 DTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDL 524

Query: 574 ATKELLKKSLWKEGRRKEA 592
            T   L   L K GR  EA
Sbjct: 525 ITYSTLLNGLCKAGRFAEA 543


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 139/649 (21%), Positives = 248/649 (38%), Gaps = 104/649 (16%)

Query: 46  IRLAVRSNSSNSLSSLLND---RLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPN 97
           IR+  R    ++  SLL++     L+P +V +         A   D A      +K+N  
Sbjct: 242 IRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKAN-G 300

Query: 98  FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVL 157
              +  T  ++  VL K+ R +E   L   +  +K +  +  +  ++  Y  +G  E   
Sbjct: 301 LVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAY 360

Query: 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217
           S     R++  + S  SYN ++S   + G+  EA++ F + + + AIPN  TY +MI+ L
Sbjct: 361 SLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEE-MKKDAIPNLSTYNIMIDML 419

Query: 218 VNLGKLDSAL-----------------------------------EVFSALPLMRIKRTS 242
              GKL++AL                                    +F  L     +  +
Sbjct: 420 CKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDA 479

Query: 243 KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER-MQEMGFIQGANEFLRE 301
             Y  L+EG     R DEA  L  +M D  + P   +  +L R   + G  +  ++   E
Sbjct: 480 VTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNE 539

Query: 302 ML-----PDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEW 356
           ML     PD  + N  Y +      E E        R  +         P A + T+   
Sbjct: 540 MLRLGCSPDLLLLNT-YMDCVFKAGEIEKG------RALFQEIKNLGFIPDARSYTI--- 589

Query: 357 SPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTIL 416
              ++  L  A F                   A+  F +   + G   D  A   ++   
Sbjct: 590 ---LIHGLVKAGFA----------------HEAYELF-YTMKEQGCVLDTRAYNTVIDGF 629

Query: 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK 476
            + G V    +L+ ++++ G      T   +ID      + D A   F + ++    ++ 
Sbjct: 630 CKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELN- 688

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
              +++YSSL+    K  R  +A  ++EE++  G+ P+V T++ L+   AL   E+I + 
Sbjct: 689 ---VVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLD--ALVKAEEISEA 743

Query: 537 L--FSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKS 582
           L  F  ++     P+   + +LI   CK             +      P+  T   +   
Sbjct: 744 LVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISG 803

Query: 583 LWKEGRRKEAAAVEERCEKINDVPSLALRGHIW-AVSSADLTRVHSIYR 630
           L K G   EA  + E+ ++   V   A+   I   +S+A+  R    YR
Sbjct: 804 LAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNAN--RASDAYR 850



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 129/295 (43%), Gaps = 38/295 (12%)

Query: 18  QLQTRSFVRAPFTNKLALYLRR------AQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFI 71
           +L  R+  R  + + L +  R        Q+++ + +A    S+N+   ++       FI
Sbjct: 122 RLTDRAHCREAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVL-----SFI 176

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
            +  LR A    + +  M  LK  P FS   + + AL+T    S+ +  + TL   +   
Sbjct: 177 KSRKLREAF---TFIQTMRKLKFRPAFSAYTNLIGALST----SRDSDCMLTLFQQMQE- 228

Query: 132 KFLNVSVN---FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN 188
             L  +VN   F  L++ ++  G ++  LS  +E +  +       YN+ +  + K GK 
Sbjct: 229 --LGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKV 286

Query: 189 FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
             A + F ++   G + +  TYT MI  L    +L+ A+E+F  +   +    +  Y  +
Sbjct: 287 DMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTM 346

Query: 249 VEGFVGVERFDEAKSLLNEMRDDGKFP------------GRAMRV--ALERMQEM 289
           + G+    +F++A SLL   R  G  P            GR  +V  AL++ +EM
Sbjct: 347 IMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEM 401



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 101/239 (42%), Gaps = 6/239 (2%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVT-----HALRSAPNADSALSIMEALKSNP 96
           +ID +  A +  ++  +   + D  L P ++T       L  A   D A SI E L  + 
Sbjct: 415 MIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGL-DHK 473

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
               +  T  +L   L +  R  E   L   +  +  +  +V + +L++ +   G  E  
Sbjct: 474 TCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDG 533

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
              +NE  +          N  M    K G+  +    F+++ + G IP++R+YT++I  
Sbjct: 534 HKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHG 593

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           LV  G    A E+F  +        ++ Y  +++GF    + ++A  LL EM+  G  P
Sbjct: 594 LVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEP 652



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 88/431 (20%), Positives = 169/431 (39%), Gaps = 49/431 (11%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y  ++    + G+  EA + + Q++D   IPN+  YT +I +    G+ +   ++++  
Sbjct: 481 TYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYN-- 538

Query: 234 PLMRIKRTSKQYLIL---VEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEM 289
            ++R+   S   L+L   ++        ++ ++L  E+++ G  P  R+  + +  + + 
Sbjct: 539 EMLRLG-CSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKA 597

Query: 290 GFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKAL 349
           GF   A E    M     + + R Y    D         +  V  AY  QL   +  K  
Sbjct: 598 GFAHEAYELFYTMKEQGCVLDTRAYNTVID-----GFCKSGKVNKAY--QLLEEMKTKG- 649

Query: 350 ANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYAL 409
                   P VV          T   V   L      + A+  F   A   G   +V   
Sbjct: 650 ------HEPTVV----------TYGSVIDGLAKIDRLDEAYMLF-EEAKSKGIELNVVIY 692

Query: 410 EKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRT 469
             ++    + G ++    ++ +L   G+     T   ++D    +++   AL  F   + 
Sbjct: 693 SSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKD 752

Query: 470 L-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
           L C P       + YS L+  L K ++   A    +EM   G  P+V T++ ++   A  
Sbjct: 753 LKCTPN-----YITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKA 807

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGR 588
           G+      LF   ++ G   D+ ++  +I+     LSN+N   DA         L++E R
Sbjct: 808 GNIVEADTLFEKFKEKGGVADSAIYNAIIEG----LSNANRASDAY-------RLFEEAR 856

Query: 589 RKEAAAVEERC 599
            K  +   + C
Sbjct: 857 LKGCSIYTKTC 867



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 105/266 (39%), Gaps = 20/266 (7%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
           W   V + LA+        LV  VLR  K    A ++F W        H   A   +L +
Sbjct: 80  WGSSVENRLAELDLNPNPELVIGVLRRLKDVNNAVNYFRWAERLTDRAHCREAYNSLLMV 139

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
           +AR      +++++ ++   G     +T   I+  +  S+K   A       R L     
Sbjct: 140 MARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMRKL----- 194

Query: 476 KFKLML-LYSSLLRTLTKCKRDFDA-INVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
           KF+     Y++L+  L+   RD D  + + ++M   G   +V  F+ L+  FA +G    
Sbjct: 195 KFRPAFSAYTNLIGALST-SRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDA 253

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKK 581
              L   ++ N +EPD  ++ V I  + K             +  + L+ D  T   +  
Sbjct: 254 ALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIG 313

Query: 582 SLWKEGRRKEAAAVEERCEKINDVPS 607
            L K  R  EA  + E  ++   VP 
Sbjct: 314 VLCKADRLNEAVELFEHMDQNKQVPC 339



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 91/211 (43%), Gaps = 21/211 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           GY  +V+    ++ + AR G V+    L+ +++S+ +        + ID +G + K D A
Sbjct: 230 GYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMA 289

Query: 461 LKAFHDDRTLCGPISKFKLML---LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
            K FH+       +    L+L    Y+S++  L K  R  +A+ + E M  +  VP    
Sbjct: 290 WKFFHE-------MKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYA 342

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI----------QAYCKYLS-N 566
           ++ ++  + + G  +    L    R+ G  P    +  ++          +A  K+    
Sbjct: 343 YNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMK 402

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
            + +P+ +T  ++   L K G+ + A  V +
Sbjct: 403 KDAIPNLSTYNIMIDMLCKAGKLETALVVRD 433



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 7/194 (3%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A  IME L      + N  T + L   L K++   E+   +    S K L  + N++ 
Sbjct: 706 DEAYLIMEELMQK-GLTPNVYTWNCLLDALVKAE---EISEALVCFQSMKDLKCTPNYIT 761

Query: 143 ---LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
              L+               W E +++    +  +Y  ++S  AK G   EA   F +  
Sbjct: 762 YSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFK 821

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           ++G + +S  Y  +IE L N  +   A  +F    L      +K  ++L++     E  +
Sbjct: 822 EKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCVVLLDSLHKAECIE 881

Query: 260 EAKSLLNEMRDDGK 273
           +A  +   +R+  K
Sbjct: 882 QAAIVGAVLRETAK 895


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 139/649 (21%), Positives = 248/649 (38%), Gaps = 104/649 (16%)

Query: 46  IRLAVRSNSSNSLSSLLND---RLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPN 97
           IR+  R    ++  SLL++     L+P +V +         A   D A      +K+N  
Sbjct: 242 IRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKAN-G 300

Query: 98  FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVL 157
              +  T  ++  VL K+ R +E   L   +  +K +  +  +  ++  Y  +G  E   
Sbjct: 301 LVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAY 360

Query: 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217
           S     R++  + S  SYN ++S   + G+  EA++ F + + + AIPN  TY +MI+ L
Sbjct: 361 SLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEE-MKKDAIPNLSTYNIMIDML 419

Query: 218 VNLGKLDSAL-----------------------------------EVFSALPLMRIKRTS 242
              GKL++AL                                    +F  L     +  +
Sbjct: 420 CKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDA 479

Query: 243 KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER-MQEMGFIQGANEFLRE 301
             Y  L+EG     R DEA  L  +M D  + P   +  +L R   + G  +  ++   E
Sbjct: 480 VTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNE 539

Query: 302 ML-----PDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEW 356
           ML     PD  + N  Y +      E E        R  +         P A + T+   
Sbjct: 540 MLRLGCSPDLLLLNT-YMDCVFKAGEIEKG------RALFQEIKNLGFIPDARSYTI--- 589

Query: 357 SPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTIL 416
              ++  L  A F                   A+  F +   + G   D  A   ++   
Sbjct: 590 ---LIHGLVKAGFA----------------HEAYELF-YTMKEQGCVLDTRAYNTVIDGF 629

Query: 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK 476
            + G V    +L+ ++++ G      T   +ID      + D A   F + ++    ++ 
Sbjct: 630 CKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELN- 688

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
              +++YSSL+    K  R  +A  ++EE++  G+ P+V T++ L+   AL   E+I + 
Sbjct: 689 ---VVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLD--ALVKAEEISEA 743

Query: 537 L--FSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKS 582
           L  F  ++     P+   + +LI   CK             +      P+  T   +   
Sbjct: 744 LVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISG 803

Query: 583 LWKEGRRKEAAAVEERCEKINDVPSLALRGHIW-AVSSADLTRVHSIYR 630
           L K G   EA  + E+ ++   V   A+   I   +S+A+  R    YR
Sbjct: 804 LAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNAN--RASDAYR 850



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 129/295 (43%), Gaps = 38/295 (12%)

Query: 18  QLQTRSFVRAPFTNKLALYLRR------AQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFI 71
           +L  R+  R  + + L +  R        Q+++ + +A    S+N+   ++       FI
Sbjct: 122 RLTDRAHCREAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVL-----SFI 176

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
            +  LR A    + +  M  LK  P FS   + + AL+T    S+ +  + TL   +   
Sbjct: 177 KSRKLREAF---TFIQTMRKLKFRPAFSAYTNLIGALST----SRDSDCMLTLFQQMQE- 228

Query: 132 KFLNVSVN---FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN 188
             L  +VN   F  L++ ++  G ++  LS  +E +  +       YN+ +  + K GK 
Sbjct: 229 --LGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKV 286

Query: 189 FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
             A + F ++   G + +  TYT MI  L    +L+ A+E+F  +   +    +  Y  +
Sbjct: 287 DMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTM 346

Query: 249 VEGFVGVERFDEAKSLLNEMRDDGKFP------------GRAMRV--ALERMQEM 289
           + G+    +F++A SLL   R  G  P            GR  +V  AL++ +EM
Sbjct: 347 IMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEM 401



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 101/239 (42%), Gaps = 6/239 (2%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVT-----HALRSAPNADSALSIMEALKSNP 96
           +ID +  A +  ++  +   + D  L P ++T       L  A   D A SI E L  + 
Sbjct: 415 MIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGL-DHK 473

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
               +  T  +L   L +  R  E   L   +  +  +  +V + +L++ +   G  E  
Sbjct: 474 TCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDG 533

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
              +NE  +          N  M    K G+  +    F+++ + G IP++R+YT++I  
Sbjct: 534 HKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHG 593

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           LV  G    A E+F  +        ++ Y  +++GF    + ++A  LL EM+  G  P
Sbjct: 594 LVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEP 652



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 88/431 (20%), Positives = 169/431 (39%), Gaps = 49/431 (11%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y  ++    + G+  EA + + Q++D   IPN+  YT +I +    G+ +   ++++  
Sbjct: 481 TYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYN-- 538

Query: 234 PLMRIKRTSKQYLIL---VEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEM 289
            ++R+   S   L+L   ++        ++ ++L  E+++ G  P  R+  + +  + + 
Sbjct: 539 EMLRLG-CSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKA 597

Query: 290 GFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKAL 349
           GF   A E    M     + + R Y    D         +  V  AY  QL   +  K  
Sbjct: 598 GFAHEAYELFYTMKEQGCVLDTRAYNTVID-----GFCKSGKVNKAY--QLLEEMKTKG- 649

Query: 350 ANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYAL 409
                   P VV          T   V   L      + A+  F   A   G   +V   
Sbjct: 650 ------HEPTVV----------TYGSVIDGLAKIDRLDEAYMLF-EEAKSKGIELNVVIY 692

Query: 410 EKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRT 469
             ++    + G ++    ++ +L   G+     T   ++D    +++   AL  F   + 
Sbjct: 693 SSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKD 752

Query: 470 L-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
           L C P       + YS L+  L K ++   A    +EM   G  P+V T++ ++   A  
Sbjct: 753 LKCTPN-----YITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKA 807

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGR 588
           G+      LF   ++ G   D+ ++  +I+     LSN+N   DA         L++E R
Sbjct: 808 GNIVEADTLFEKFKEKGGVADSAIYNAIIEG----LSNANRASDAY-------RLFEEAR 856

Query: 589 RKEAAAVEERC 599
            K  +   + C
Sbjct: 857 LKGCSIYTKTC 867



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 105/266 (39%), Gaps = 20/266 (7%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
           W   V + LA+        LV  VLR  K    A ++F W        H   A   +L +
Sbjct: 80  WGSSVENRLAELDLNPNPELVIGVLRRLKDVNNAVNYFRWAERLTDRAHCREAYNSLLMV 139

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
           +AR      +++++ ++   G     +T   I+  +  S+K   A       R L     
Sbjct: 140 MARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMRKL----- 194

Query: 476 KFKLML-LYSSLLRTLTKCKRDFDA-INVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
           KF+     Y++L+  L+   RD D  + + ++M   G   +V  F+ L+  FA +G    
Sbjct: 195 KFRPAFSAYTNLIGALST-SRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDA 253

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKK 581
              L   ++ N +EPD  ++ V I  + K             +  + L+ D  T   +  
Sbjct: 254 ALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIG 313

Query: 582 SLWKEGRRKEAAAVEERCEKINDVPS 607
            L K  R  EA  + E  ++   VP 
Sbjct: 314 VLCKADRLNEAVELFEHMDQNKQVPC 339



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 91/211 (43%), Gaps = 21/211 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           GY  +V+    ++ + AR G V+    L+ +++S+ +        + ID +G + K D A
Sbjct: 230 GYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMA 289

Query: 461 LKAFHDDRTLCGPISKFKLML---LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
            K FH+       +    L+L    Y+S++  L K  R  +A+ + E M  +  VP    
Sbjct: 290 WKXFHE-------MKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYA 342

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI----------QAYCKYLS-N 566
           ++ ++  + + G  +    L    R+ G  P    +  ++          +A  K+    
Sbjct: 343 YNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMK 402

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
            + +P+ +T  ++   L K G+ + A  V +
Sbjct: 403 KDAIPNLSTYNIMIDMLCKAGKLETALVVRD 433



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 7/194 (3%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A  IME L      + N  T + L   L K++   E+   +    S K L  + N++ 
Sbjct: 706 DEAYLIMEELMQK-GLTPNVYTWNCLLDALVKAE---EISEALVCFQSMKDLKCTPNYIT 761

Query: 143 ---LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
              L+               W E +++    +  +Y  ++S  AK G   EA   F +  
Sbjct: 762 YSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFK 821

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           ++G + +S  Y  +IE L N  +   A  +F    L      +K  ++L++     E  +
Sbjct: 822 EKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCVVLLDSLHKAECIE 881

Query: 260 EAKSLLNEMRDDGK 273
           +A  +   +R+  K
Sbjct: 882 QAAIVGAVLRETAK 895


>gi|356523854|ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Glycine max]
          Length = 678

 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 111/474 (23%), Positives = 190/474 (40%), Gaps = 80/474 (16%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           +T  YN ++    K+     A   F+Q+  +  + +  TY  +I  +  +G +D AL + 
Sbjct: 178 TTRLYNALIDALVKSNSIDLAYLKFQQMAADNCVADRFTYNTLIHGVCKVGVVDEALRLV 237

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMG 290
             +           Y +L+EGF    R DEA  +   M+D G +P  A   AL       
Sbjct: 238 RQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETMKDSGVYPNEATVRAL------- 290

Query: 291 FIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALA 350
            + G     R + P K ++ +  + D   + E          R+ + +     L    LA
Sbjct: 291 -VHGV---FRCVDPSKALELLSEFLDREQEQE----------RVHFMLACDTVL--YCLA 334

Query: 351 NTLDEWSPEVVSLLA---------DAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPG 401
           N  +  + E+V  L              V+   + C V +  +  ET   F   +  + G
Sbjct: 335 N--NSMAKEMVVFLRRVLGRGGYFPGNSVFNVVMACLV-KGAELRETCDVF--EILRKQG 389

Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL 461
               + A   ++ +L ++   E  DR+  +L SDG+     +  +II+ +  +K  D A 
Sbjct: 390 VKAGIGAYLALIEVLYKNEWREEGDRVYGQLISDGLISNVFSYNMIINCFCRAKLMDNAS 449

Query: 462 KAFHDDR------------TL----C--GPISKFKLML-------------LYSSLLRTL 490
           +AF D +            TL    C  G I K + +L              +SS++  L
Sbjct: 450 EAFRDMQVRGVVPNLVTFNTLINGHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGL 509

Query: 491 TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA 550
            + KR  +A+    EMI  GI P+   ++ L+      GD     KL   +++ G+ PD 
Sbjct: 510 CQIKRTEEALECFTEMIEWGINPNAVIYNILIRSLCTIGDVARSVKLLRRMQKEGISPDT 569

Query: 551 YMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           Y +  LIQ +C+             +S S L PD  T     ++L + GR +EA
Sbjct: 570 YSYNALIQIFCRMNKVEKAKKLFDSMSRSGLNPDNYTYSAFIEALSESGRLEEA 623



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 103/478 (21%), Positives = 188/478 (39%), Gaps = 58/478 (12%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN ++    K G   EA+   RQ+ D+G  PN  TYT++IE      ++D A  VF  +
Sbjct: 216 TYNTLIHGVCKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETM 275

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-----AMRVALERMQE 288
               +         LV G        +A  LL+E  D  +   R     A    L  +  
Sbjct: 276 KDSGVYPNEATVRALVHGVFRCVDPSKALELLSEFLDREQEQERVHFMLACDTVLYCLAN 335

Query: 289 MGFIQGANEFLREML------PDKRIKNVRYYEDGSDDDEDENDD-----NNSGVRIAYG 337
               +    FLR +L      P   + NV         +  E  D        GV+   G
Sbjct: 336 NSMAKEMVVFLRRVLGRGGYFPGNSVFNVVMACLVKGAELRETCDVFEILRKQGVKAGIG 395

Query: 338 VQLKPWLDPKALANTL--DEWSPE----VVSLLADAKF--VWTTRLVCKVLRHFKSPETA 389
             L       AL   L  +EW  E       L++D     V++  ++       K  + A
Sbjct: 396 AYL-------ALIEVLYKNEWREEGDRVYGQLISDGLISNVFSYNMIINCFCRAKLMDNA 448

Query: 390 WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID 449
              F  +  + G   ++     ++    + G ++   +L+  L  +G++    T   I+D
Sbjct: 449 SEAFRDMQVR-GVVPNLVTFNTLINGHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVD 507

Query: 450 FYGISKKADAALKAFHDDRTLCGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEM 506
                K+ + AL+ F +       + ++ +    ++Y+ L+R+L        ++ +L  M
Sbjct: 508 GLCQIKRTEEALECFTE-------MIEWGINPNAVIYNILIRSLCTIGDVARSVKLLRRM 560

Query: 507 IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK---- 562
              GI PD  +++ L+  F      +  +KLF  + ++G+ PD Y +   I+A  +    
Sbjct: 561 QKEGISPDTYSYNALIQIFCRMNKVEKAKKLFDSMSRSGLNPDNYTYSAFIEALSESGRL 620

Query: 563 --------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEK----INDVPSL 608
                    +  +   PD+    L+ K L ++   +EA  + ERC +    +N +P+L
Sbjct: 621 EEAKKMFYSMEANGCSPDSYICNLIIKILVQQEYVEEAQNIIERCRQKGISLNSIPNL 678



 Score = 42.7 bits (99), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 53/260 (20%), Positives = 109/260 (41%), Gaps = 6/260 (2%)

Query: 14  KAFTQLQTRSFVRAPFT-NKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIV 72
           + + QL +   +   F+ N +     RA+L+D+   A R      +  + N    +  I 
Sbjct: 415 RVYGQLISDGLISNVFSYNMIINCFCRAKLMDNASEAFRDMQVRGV--VPNLVTFNTLIN 472

Query: 73  THALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSK 132
            H    A   D A  ++E+L  N     +  T  ++   L + +R  E      ++    
Sbjct: 473 GHCKDGA--IDKARKLLESLLEN-GLKPDIFTFSSIVDGLCQIKRTEEALECFTEMIEWG 529

Query: 133 FLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV 192
               +V +  L++   T GD+   +      ++      T SYN ++ ++ +  K  +A 
Sbjct: 530 INPNAVIYNILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIFCRMNKVEKAK 589

Query: 193 ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
           + F  +   G  P++ TY+  IE L   G+L+ A ++F ++        S    ++++  
Sbjct: 590 KLFDSMSRSGLNPDNYTYSAFIEALSESGRLEEAKKMFYSMEANGCSPDSYICNLIIKIL 649

Query: 253 VGVERFDEAKSLLNEMRDDG 272
           V  E  +EA++++   R  G
Sbjct: 650 VQQEYVEEAQNIIERCRQKG 669



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 42/98 (42%)

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           +++ + + G    +   F Q+   G  P +R Y  +I+ LV    +D A   F  +    
Sbjct: 150 LLASWGRLGLANYSAHVFCQISFLGLSPTTRLYNALIDALVKSNSIDLAYLKFQQMAADN 209

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                  Y  L+ G   V   DEA  L+ +M+D G FP
Sbjct: 210 CVADRFTYNTLIHGVCKVGVVDEALRLVRQMKDKGHFP 247



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 30/169 (17%), Positives = 77/169 (45%)

Query: 107 ALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR 166
           AL  VL K++   E   + G + S   ++   ++  ++  +  +  ++     + + + R
Sbjct: 399 ALIEVLYKNEWREEGDRVYGQLISDGLISNVFSYNMIINCFCRAKLMDNASEAFRDMQVR 458

Query: 167 AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
             + +  ++N +++ + K G   +A +    +++ G  P+  T++ +++ L  + + + A
Sbjct: 459 GVVPNLVTFNTLINGHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQIKRTEEA 518

Query: 227 LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           LE F+ +    I   +  Y IL+     +     +  LL  M+ +G  P
Sbjct: 519 LECFTEMIEWGINPNAVIYNILIRSLCTIGDVARSVKLLRRMQKEGISP 567


>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
 gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
          Length = 701

 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 109/529 (20%), Positives = 210/529 (39%), Gaps = 72/529 (13%)

Query: 98  FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVL 157
            S N  T + L  +  K ++  + K L+  +  +      +++  L+   + SG+L   +
Sbjct: 145 MSPNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDAV 204

Query: 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI-PNSRTYTVMIEH 216
             ++E   R        YNI++  + + G   +A E +++++ E ++ P+  TY +MI  
Sbjct: 205 ELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMING 264

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQ-----YLILVEGFVGVERFDEAKSLLNEMRDD 271
           L  LGKLD ++E+++     R+K+  K      +  ++ G      F+ A+ +  EM + 
Sbjct: 265 LCKLGKLDESMEMWN-----RMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIES 319

Query: 272 GKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNS 330
           G  P  R     L  +   G +    E    M                         NN 
Sbjct: 320 GLSPDVRTYNAMLSGLFRTGKLNKCFELWNVM-----------------------SKNNC 356

Query: 331 GVRIAYGVQLKPWLDPKALANTLDEWSP-EVVSLLADAK-FVWTTRLVCK------VLRH 382
              ++Y + ++  LD K +   +  W       L AD+  +      +CK       LR 
Sbjct: 357 CNIVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRI 416

Query: 383 FKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFS 442
            +  E             G   D +A   M+  L + G +E    LI +++ +  +L   
Sbjct: 417 LEEAENE-----------GADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSH 465

Query: 443 TIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAIN 501
               +I+ Y  + K + A+    + ++  C P      ++ Y++++  L K +R  DA  
Sbjct: 466 VFNSLINGYVRAFKLEEAISVLREMKSKDCAPT-----VVSYNTIINGLCKAERFSDAYL 520

Query: 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
            L+EM+  G+ PD+ T+S L+          +   L+       ++PD  M  ++I   C
Sbjct: 521 SLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLC 580

Query: 562 ------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
                         +   N +PD  T   + + L+K G   EA  + +R
Sbjct: 581 TAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYKAGDCVEALKIWDR 629



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 96/204 (47%), Gaps = 2/204 (0%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + H L  A N ++A  + + +  +   S +  T +A+ + L ++ + ++   L   +S +
Sbjct: 296 MIHGLSKAGNFNAAEKVFQEMIES-GLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKN 354

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
              N+ V++  L+Q    +  +E  +  W    +R     + +Y ++++   K G   +A
Sbjct: 355 NCCNI-VSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKA 413

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
           +    +  +EGA  ++  Y+ M+  L   G L+ A+E+   +   R K  S  +  L+ G
Sbjct: 414 LRILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLING 473

Query: 252 FVGVERFDEAKSLLNEMRDDGKFP 275
           +V   + +EA S+L EM+     P
Sbjct: 474 YVRAFKLEEAISVLREMKSKDCAP 497



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 104/285 (36%), Gaps = 47/285 (16%)

Query: 370 VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
           V +  LV K+L+  K+P  A   F      PGY H  +    +L  L     V  V R++
Sbjct: 7   VISPTLVLKLLKAEKNPNAALAIFDSACQHPGYAHPPFVFHHILRRLMDPKLVVHVGRIV 66

Query: 430 AKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD--DRTLCGP-ISKFKLML----- 481
             +R+             I  Y      D AL  F +  D   C P I  F  ML     
Sbjct: 67  DLMRAQRCTCSEDVALSAIKAYAKCSMPDQALNLFQNMVDIFGCNPGIRSFNSMLNAFIE 126

Query: 482 ------------------------LYSSLLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQ 516
                                    Y+ L++   K KR F+    +L  M  +G+ PD+ 
Sbjct: 127 SNQWREAELFFTYFQTAGMSPNLQTYNILIKISCK-KRQFEKGKGLLTWMFENGLNPDIL 185

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC-------------KY 563
           ++  L+   A  G+     +LF  +   GV PD   + +LI  +              + 
Sbjct: 186 SYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRL 245

Query: 564 LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
           L+ S++ P   T  ++   L K G+  E+  +  R +K    P L
Sbjct: 246 LTESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDL 290



 Score = 40.0 bits (92), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 13/133 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +  +SS++  L+K      A  V +EMI SG+ PDV+T++ ++      G      +L++
Sbjct: 290 LFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWN 349

Query: 540 MVRQNGVEPDAYMFKVLIQ------------AYCKYLSNSNLMPDAATKELLKKSLWKEG 587
           ++ +N    +   + +LIQ             Y + L    L  D+ T  LL   L K G
Sbjct: 350 VMSKNNC-CNIVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNG 408

Query: 588 RRKEAAAVEERCE 600
              +A  + E  E
Sbjct: 409 YLNKALRILEEAE 421


>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 819

 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 109/513 (21%), Positives = 212/513 (41%), Gaps = 37/513 (7%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           ++T   R + + ++A  + E +K+   FSH++ T +AL  V  KS R  E   ++ ++  
Sbjct: 285 LITCCKRGSLHQEAA-QVFEEMKA-AGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMEL 342

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           + F    V + +L+  Y+  G L+  +   N+  ++       +Y  ++S + + GK   
Sbjct: 343 NGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVES 402

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR--TSKQYLIL 248
           A+  F ++ + G  PN  T+   I+   N GK    +++F  + +  +     +   L+ 
Sbjct: 403 AMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLA 462

Query: 249 VEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREML---- 303
           V G  G++   E   +  EM+  G  P R      +      G  + A    R ML    
Sbjct: 463 VFGQNGMD--SEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGV 520

Query: 304 -PDKRIKNV--------RYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLD 354
            PD    N           +E       +  D       + Y   L  + + K +   + 
Sbjct: 521 TPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIG-LMH 579

Query: 355 EWSPEVVSLLADAKFVW--TTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
             + EV S + + + V   T  LVC         E A+        + G++ D+  L  M
Sbjct: 580 SLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSEL----KERGFSPDITTLNSM 635

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
           ++I  R   V   + ++  ++  G     +T   ++  Y  S+ AD   K+    R +  
Sbjct: 636 VSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSLM--YMHSRSADFG-KSEEILREILA 692

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
              K  + + Y++++    +  R  DA  +  EM  SGIVPDV T++  +  +A    + 
Sbjct: 693 KGIKPDI-ISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAA---DS 748

Query: 533 IVQKLFSMVR---QNGVEPDAYMFKVLIQAYCK 562
           + ++   +VR   ++G  P+   +  ++  YCK
Sbjct: 749 MFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCK 781



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 101/542 (18%), Positives = 210/542 (38%), Gaps = 54/542 (9%)

Query: 87  SIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQW 146
           S++E +KS+   + +  T + L T   +   + E   +  ++ ++ F +  V +  L+  
Sbjct: 265 SLVEKMKSD-GIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDV 323

Query: 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206
           Y  S   +  +   NE        S  +YN ++S YA+ G   EA+E   Q+ ++G  P+
Sbjct: 324 YGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPD 383

Query: 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
             TYT ++      GK++SA+ +F  +     K     +   ++ +    +F +   + +
Sbjct: 384 VFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFD 443

Query: 267 EMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM-----LPDKRIKNV---RYYEDG 317
           E+   G  P        L    + G     +   +EM     +P++   N     Y   G
Sbjct: 444 EINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCG 503

Query: 318 SDDDEDENDDNNSGVRIAYGVQLKPWLDP---------KALA-NTLDEWSPEVVSLLADA 367
           S +               Y   L   + P          ALA   + E S +V++ + D 
Sbjct: 504 SFEQ----------AMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDG 553

Query: 368 KFVWTTRLVCKVLRHFKSPETA--WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELV 425
           +        C +L  + + +     H      Y          L+ ++ + ++   +   
Sbjct: 554 RCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEA 613

Query: 426 DRLIAKLRSDGMRLPFSTIRLIIDFYG---ISKKADAALKAFHDDRTLCGPISKFKLMLL 482
           +R  ++L+  G     +T+  ++  YG   +  KA+  L  +  +R           M  
Sbjct: 614 ERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLD-YMKERGFT------PSMAT 666

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+SL+   ++      +  +L E++  GI PD+ +++ ++Y +      +   ++FS +R
Sbjct: 667 YNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMR 726

Query: 543 QNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRK 590
            +G+ PD   +   I +Y             +Y+      P+  T   +     K  R+ 
Sbjct: 727 DSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKD 786

Query: 591 EA 592
           EA
Sbjct: 787 EA 788



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 89/209 (42%), Gaps = 7/209 (3%)

Query: 80  PNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
           P A+ A S ++       FS + +TL+++ ++  + Q   +   ++  +    F      
Sbjct: 611 PEAERAFSELKER----GFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMAT 666

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           + +LM  +S S D         E   +       SYN V+  Y +  +  +A   F ++ 
Sbjct: 667 YNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMR 726

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           D G +P+  TY   I         + A+ V   +     +     Y  +V+G+  + R D
Sbjct: 727 DSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKD 786

Query: 260 EAKSLLNEMRD-DGKFP-GRAMRVALERM 286
           EAK  + ++R+ D   P G  +R+ LER+
Sbjct: 787 EAKLFVEDLRNLDPHAPKGEDLRL-LERI 814



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 45/230 (19%), Positives = 86/230 (37%), Gaps = 29/230 (12%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS---- 454
           + G++ DVY+   +++  A  G       +  K+  +G +    T  +I++ +G      
Sbjct: 201 EDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEEGCKPTLITYNVILNVFGKMGTPW 260

Query: 455 KKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDF---DAINVLEEMIFSGI 511
            K  + ++    D       +       Y++L+   T CKR     +A  V EEM  +G 
Sbjct: 261 NKITSLVEKMKSDGIAPDAYT-------YNTLI---TCCKRGSLHQEAAQVFEEMKAAGF 310

Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--------- 562
             D  T++ L+  +      K   K+ + +  NG  P    +  LI AY +         
Sbjct: 311 SHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAME 370

Query: 563 ---YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA 609
               ++     PD  T   L     + G+ + A  + E        P++ 
Sbjct: 371 LKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNIC 420


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 110/555 (19%), Positives = 218/555 (39%), Gaps = 85/555 (15%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           V   L+S  +   ALS   ++   P   H   T + +   L    +  ++  +  +    
Sbjct: 92  VLGVLKSMTDPIRALSYFYSISEFPTVLHTTETCNFMLEFLRVHDKVEDMAAVF-EFMQK 150

Query: 132 KFLNVSVN-FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           K +   ++ ++ + +  S  G L  + +  N+ R+   +L+  SYN ++ +  ++G   E
Sbjct: 151 KIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGE 210

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR---IKRTSKQYLI 247
           A+E +R+++ EG  P+ +TY+ +   +V LGK   +  V   L  M    ++     + I
Sbjct: 211 ALEVYRRMVSEGLKPSLKTYSAL---MVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTI 267

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDK 306
            +       + DEA  +   M D+G  P      V ++ +   G ++ A E   +M  + 
Sbjct: 268 CIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANG 327

Query: 307 RIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLAD 366
              +   Y    D   D  D +            + W   +A     D + P+VV+    
Sbjct: 328 HKPDQVIYITLLDKFNDFGDLDTFK---------EFWSQMEA-----DGYMPDVVT---- 369

Query: 367 AKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVD 426
             F     ++CK  R F      +     V  + G   +++    ++  L R G +E   
Sbjct: 370 --FTILVDVLCKA-RDFDEAFATFD----VMRKQGILPNLHTYNTLICGLLRAGRIEDAL 422

Query: 427 RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSL 486
           +L+  + S G++    T    ID++G S +   A++ F                      
Sbjct: 423 KLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETF---------------------- 460

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
                            E+M   GIVP++   +  +Y  A  G  +  + +F+ +R+NG+
Sbjct: 461 -----------------EKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGL 503

Query: 547 EPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAA 594
            PD+  + ++++ Y K             +  +   PD      L  SL+K GR  EA  
Sbjct: 504 APDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQ 563

Query: 595 VEERCEKINDVPSLA 609
           + +R + +   P++ 
Sbjct: 564 MFDRMKDMKLSPTVV 578



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 127/300 (42%), Gaps = 38/300 (12%)

Query: 174  SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
            ++N++++V+ K+GK  E  E ++++I     P++ TY ++I  L     LD AL+ F  L
Sbjct: 825  TFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDL 884

Query: 234  PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFI 292
                 + T + Y  L++G   V R +EA  L  EM D G  P  A+  + +    ++G  
Sbjct: 885  VSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDT 944

Query: 293  QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPW---LDPKAL 349
            + A +  + M+                         N G+R      LK +   +D   L
Sbjct: 945  ETACQLFKRMV-------------------------NEGIR----PDLKSYTILVDCLCL 975

Query: 350  ANTLDE---WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDV 406
            A  +DE   +  E+ S   D  F+   R++   L   +  E A   +  +  + G   D+
Sbjct: 976  AGRVDEALYYFNELKSTGLDPDFIAYNRII-NGLGKSQRMEEALALYNEMRNR-GIVPDL 1033

Query: 407  YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD 466
            Y    ++  L   G VE   R+  +L+  G+     T   +I  Y +S+  + A   + +
Sbjct: 1034 YTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKN 1093



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 83/172 (48%)

Query: 104  TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
            T + + + LAKS    +      D+ SS F      +  L+   +  G LE  +  + E 
Sbjct: 860  TYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEM 919

Query: 164  RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
                   +   +NI+++ Y K G    A + F+++++EG  P+ ++YT++++ L   G++
Sbjct: 920  SDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRV 979

Query: 224  DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            D AL  F+ L    +      Y  ++ G    +R +EA +L NEMR+ G  P
Sbjct: 980  DEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVP 1031



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 120/595 (20%), Positives = 222/595 (37%), Gaps = 88/595 (14%)

Query: 85   ALSIMEALKSN---PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
            A+   E +K+    PN     ++L++LA +     R  E KT+   +  +     SV + 
Sbjct: 456  AVETFEKMKAKGIVPNIVACNASLYSLAEM----GRLREAKTMFNGLRENGLAPDSVTYN 511

Query: 142  NLMQWYSTSGDLELVLSTWNEY---------------------------------RQRAK 168
             +M+ YS  G ++  ++  +E                                  R +  
Sbjct: 512  MMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDM 571

Query: 169  LLSTE--SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
             LS    +YN ++S   K G+  +A+E F  +I +   PN+ ++  +++      +++ A
Sbjct: 572  KLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELA 631

Query: 227  LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERM 286
            L++FS + +M  K     Y  ++ G +   + + A    ++++         +   L  +
Sbjct: 632  LKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKSMHPDHVTICTLLPGL 691

Query: 287  QEMGFIQGANEFLREMLPDKRIK-NVRYYED--GSDDDEDENDDNNSGVRIAYGVQL--- 340
             + G I  A    R+ +   R + N  ++ED  G    E E D       I +  +L   
Sbjct: 692  VKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDK-----AIIFAEELVLN 746

Query: 341  -----KPWLDPKALANTLDEWSPEVVSLLADAKF---------VWTTRLVCKVLRHFKSP 386
                   +L P  L   L +   E+ +     KF         + +   +   L      
Sbjct: 747  GICREDSFLIP--LVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYT 804

Query: 387  ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
            E AW  F  +    G   D +    +L +  + G +  +  L  ++ S   +    T  +
Sbjct: 805  EKAWDLFKDMK-NVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNI 863

Query: 447  IIDFYGISKKADAALKAFHDDRTLCGPISKFKLM-LLYSSLLRTLTKCKRDFDAINVLEE 505
            +I     S   D AL  F+D  +     S F+     Y  L+  L K  R  +A+ + EE
Sbjct: 864  VISSLAKSNNLDKALDFFYDLVS-----SDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEE 918

Query: 506  MIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC---- 561
            M   G  P+   F+ L+  +   GD +   +LF  +   G+ PD   + +L+   C    
Sbjct: 919  MSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGR 978

Query: 562  --------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
                      L ++ L PD      +   L K  R +EA A+         VP L
Sbjct: 979  VDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDL 1033



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 77/144 (53%), Gaps = 4/144 (2%)

Query: 417  ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK 476
             + G  E   +L  ++ ++G+R    +  +++D   ++ + D AL  F++ ++  G    
Sbjct: 939  GKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKST-GLDPD 997

Query: 477  FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
            F   + Y+ ++  L K +R  +A+ +  EM   GIVPD+ T++ LM +  L G  +  ++
Sbjct: 998  F---IAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKR 1054

Query: 537  LFSMVRQNGVEPDAYMFKVLIQAY 560
            ++  ++  G+EPD + +  LI+ Y
Sbjct: 1055 MYEELQLAGLEPDVFTYNALIRGY 1078



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 101/247 (40%), Gaps = 7/247 (2%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I    L  A   D A  I   +  +     +  T   L   L  + +    K L   + +
Sbjct: 267 ICIRVLGRAGKIDEAYEIFRRM-DDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKA 325

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           +      V ++ L+  ++  GDL+     W++      +    ++ I++ V  K     E
Sbjct: 326 NGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDE 385

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A  TF  +  +G +PN  TY  +I  L+  G+++ AL++   +  + ++ T+  Y+  ++
Sbjct: 386 AFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFID 445

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEF---LRE--MLP 304
            F       +A     +M+  G  P   A   +L  + EMG ++ A      LRE  + P
Sbjct: 446 YFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAP 505

Query: 305 DKRIKNV 311
           D    N+
Sbjct: 506 DSVTYNM 512



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/241 (19%), Positives = 102/241 (42%), Gaps = 10/241 (4%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+   L  A + D A +  + ++       N  T + L   L ++ R  +   L+  + S
Sbjct: 372 ILVDVLCKARDFDEAFATFDVMRKQ-GILPNLHTYNTLICGLLRAGRIEDALKLLDTMES 430

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                 +  ++  + ++  SG+    + T+ + + +  + +  + N  +   A+ G+  E
Sbjct: 431 VGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLRE 490

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A   F  + + G  P+S TY +M++    +G++D A+ + S +    I+   +  +I+V 
Sbjct: 491 AKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEM----IRNGCEPDVIVVN 546

Query: 251 GFVG----VERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPD 305
             +       R DEA  + + M+D    P        L  + + G +Q A E    M+  
Sbjct: 547 SLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXK 606

Query: 306 K 306
           K
Sbjct: 607 K 607


>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 108/540 (20%), Positives = 214/540 (39%), Gaps = 73/540 (13%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           + A  + E +K+   FS ++ T +AL  V  KS+R  E   ++ ++ +S F    V + +
Sbjct: 308 EEAAEVFEEMKA-AGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNS 366

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  Y+  G L+  +   ++  ++       +Y  ++S + KTGK+  A++ F ++   G
Sbjct: 367 LISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAG 426

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI--KRTSKQYLILVEGFVGVERFDE 260
             PN  T+  +I+   N G     ++VF  + +        +   L+ V G  G++   E
Sbjct: 427 CQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMD--SE 484

Query: 261 AKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSD 319
              +  EM+  G  P R      +      GF   A    R ML      ++  Y     
Sbjct: 485 VSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTY----- 539

Query: 320 DDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKV 379
                   N     +A G               L E S +V++ + D +        C +
Sbjct: 540 --------NAVLAALARG--------------GLWEQSEKVLAEMKDGRCKPNELTYCSL 577

Query: 380 LRHFKSPETAWHFFCWVAYQPGYTHDVYA---------LEKMLTILARHGHVELVDRLIA 430
           L  + + +        V        ++Y+         L+ ++ + ++   +   +R   
Sbjct: 578 LHAYANGKE-------VERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFL 630

Query: 431 KLRSDGMRLPFSTIRLIIDFYG---ISKKADAALKAFHDDRTLCGPISKFKLML-LYSSL 486
           +LR  G     +T+  ++  YG   +  K +  L    D        S F   L  Y+SL
Sbjct: 631 ELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKD--------SGFTPSLTTYNSL 682

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           +   ++ +    + ++L E+I  G+ PD+ +F+ +++ +   G  K   ++F+ ++  G+
Sbjct: 683 MYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGL 742

Query: 547 EPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAA 594
            PD   +   I +Y             KY+  +   P+  T   L     K  RR EA++
Sbjct: 743 APDVITYNTFIASYASDSMFIEAIDVVKYMIKNGCKPNQNTYNSLIDWFCKLNRRDEASS 802



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/218 (20%), Positives = 93/218 (42%), Gaps = 23/218 (10%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G+   +     +++  AR G ++    L +++   G++    T   ++  +  + K D A
Sbjct: 356 GFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYA 415

Query: 461 LKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           +K F + R   C P      +  +++L++         + + V EE+     VPD+ T++
Sbjct: 416 MKVFEEMRVAGCQPN-----ICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWN 470

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY--CKYLS----------NS 567
            L+  F   G +  V  +F  +++ G  P+   F  LI AY  C +            ++
Sbjct: 471 TLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDA 530

Query: 568 NLMPDAAT-----KELLKKSLWKEGRRKEAAAVEERCE 600
            + PD +T       L +  LW++  +  A   + RC+
Sbjct: 531 GVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCK 568



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 1/193 (0%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
            FS + +TL+A+ ++  + +   +   ++  I  S F      + +LM  YS +   E  
Sbjct: 636 GFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKS 695

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
                E   +       S+N V+  Y + G+  EA   F ++ D G  P+  TY   I  
Sbjct: 696 EDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIAS 755

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD-DGKFP 275
             +      A++V   +     K     Y  L++ F  + R DEA S ++ +R+ D    
Sbjct: 756 YASDSMFIEAIDVVKYMIKNGCKPNQNTYNSLIDWFCKLNRRDEASSFISNLRNLDPSVT 815

Query: 276 GRAMRVALERMQE 288
               R  LER+ +
Sbjct: 816 KDEERRLLERLNK 828



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/219 (21%), Positives = 89/219 (40%), Gaps = 18/219 (8%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D+Y    +++   R    E    +  ++++ G      T   ++D YG S++   A
Sbjct: 286 GVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREA 345

Query: 461 LKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           ++   +        S F   ++ Y+SL+    +     +A+ +  +M+  GI PDV T++
Sbjct: 346 MEVLKEMEA-----SGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYT 400

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM--------- 570
            L+  F   G +    K+F  +R  G +P+   F  LI+ +    +   +M         
Sbjct: 401 TLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKIC 460

Query: 571 ---PDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
              PD  T   L     + G   E + V +  ++   VP
Sbjct: 461 ECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVP 499



 Score = 42.4 bits (98), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 46/236 (19%), Positives = 94/236 (39%), Gaps = 3/236 (1%)

Query: 43  IDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSH-- 100
           +D I L +   SS+ L+   +    D   +   L      + AL +   +++  +F+   
Sbjct: 124 LDEILLQLFETSSDGLNFTSDSVSFDILGIIKGLVFYKKNELALCVFYFVRNREDFASIL 183

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           + S +  + +VL K  R     +L+ D+ +         + +L+  Y+++G     +  +
Sbjct: 184 SNSVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVF 243

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI-DEGAIPNSRTYTVMIEHLVN 219
            +  +     +  +YN++++VY K G  +  +      +   G  P+  TY  +I     
Sbjct: 244 KKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRR 303

Query: 220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               + A EVF  +           Y  L++ +    R  EA  +L EM   G  P
Sbjct: 304 GSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAP 359



 Score = 42.4 bits (98), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 40/193 (20%), Positives = 82/193 (42%), Gaps = 13/193 (6%)

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGY----THDVYALEKMLTILARHGHVELVDRLIAK 431
           + K L  +K  E A   F +V  +  +    ++ V A+  ++++L + G       L+  
Sbjct: 153 IIKGLVFYKKNELALCVFYFVRNREDFASILSNSVVAV--IISVLGKEGRASFAASLLHD 210

Query: 432 LRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTL 490
           LR+DG+ +       +I  Y  + +   A+  F   +   C P      ++ Y+ +L   
Sbjct: 211 LRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPT-----LITYNVILNVY 265

Query: 491 TKCKRDFDAI-NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
            K    +  I  +++ M  SG+ PD+ T++ L+         +   ++F  ++  G  PD
Sbjct: 266 GKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPD 325

Query: 550 AYMFKVLIQAYCK 562
              +  L+  Y K
Sbjct: 326 KVTYNALLDVYGK 338


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 104/439 (23%), Positives = 180/439 (41%), Gaps = 56/439 (12%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SYN ++S ++K  +   A + F ++   G  P+  TY +MI  L + GKL+ A EV   L
Sbjct: 133 SYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDEL 192

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
                K +   Y IL+E  +   R +EA  L +E+   G  P      A+        I+
Sbjct: 193 LKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAI--------IR 244

Query: 294 GANEFLREMLPDKRIKNVRYYED-GSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
           G     +E + D+ +  VR+    G + D            ++Y + L+ +L+ K+    
Sbjct: 245 G---ICKEGMEDRALDFVRHLSARGCNPD-----------VVSYNILLRSFLN-KSRWED 289

Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
            +    ++V    +   V  + L+    R  +  E        V  + G T D Y+ + +
Sbjct: 290 GERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVL--EVMKEKGLTPDSYSYDPL 347

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLP----FSTIRLIIDFYGISKKADAALKAFHD-D 467
           ++   + G ++L    + K+ SDG  LP    ++TI   +  +G    AD AL  F   D
Sbjct: 348 ISAFCKEGRLDLAIEYLEKMVSDGC-LPDIVNYNTILATLCKFGC---ADLALDVFEKLD 403

Query: 468 RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
              C P  +      Y+++   L  C     A+ ++ EMI  GI PD  T++ L+     
Sbjct: 404 EVGCPPTVR-----AYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCR 458

Query: 528 QG--DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDA 573
            G  DE I   L   +     +P    F +++   CK             +     +P+ 
Sbjct: 459 DGLVDEAI--GLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNE 516

Query: 574 ATKELLKKSLWKEGRRKEA 592
            +  LL + +   G R EA
Sbjct: 517 TSYVLLIEGIAYAGWRAEA 535



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 105/256 (41%), Gaps = 53/256 (20%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G++ DV     M+  L   G +EL   ++ +L  DG +    T  ++I+   +  + + A
Sbjct: 161 GFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEA 220

Query: 461 LKAFHD--------------------------DRTL----------CGPISKFKLMLLYS 484
           L+ F +                          DR L          C P      ++ Y+
Sbjct: 221 LELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPD-----VVSYN 275

Query: 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544
            LLR+     R  D   ++++M+ SG  P+V T S L+  F  +G  +    +  ++++ 
Sbjct: 276 ILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEK 335

Query: 545 GVEPDAYMFKVLIQAYCK---------YLS---NSNLMPDAATKELLKKSLWKEGRRKEA 592
           G+ PD+Y +  LI A+CK         YL    +   +PD      +  +L K G    A
Sbjct: 336 GLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLA 395

Query: 593 AAVEERCEKINDVPSL 608
             V E+ +++   P++
Sbjct: 396 LDVFEKLDEVGCPPTV 411



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/231 (21%), Positives = 93/231 (40%), Gaps = 9/231 (3%)

Query: 61  LLNDRLL---DPFIVTHALRSAP-----NADSALSIMEALKSNPNFSHNQSTLHALATVL 112
           L+ D +L   +P +VTH++  +          A++++E +K     + +  +   L +  
Sbjct: 293 LMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEK-GLTPDSYSYDPLISAF 351

Query: 113 AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
            K  R       +  + S   L   VN+  ++      G  +L L  + +  +     + 
Sbjct: 352 CKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTV 411

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            +YN + S     G   +A+E   ++I +G  P+  TY  +I  L   G +D A+ +   
Sbjct: 412 RAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVD 471

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
           +   R + T   + I++ G     R  E   LL  M + G  P     V L
Sbjct: 472 MEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSYVLL 522



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/206 (19%), Positives = 88/206 (42%), Gaps = 18/206 (8%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           DVY+   M++  ++   ++  +++  ++RS G      T  ++I       K + A +  
Sbjct: 130 DVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVM 189

Query: 465 HDD-RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
            +  +  C P      ++ Y+ L+       R  +A+ + +E++  G+ PD+ T++ ++ 
Sbjct: 190 DELLKDGCKPS-----VITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIR 244

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMP 571
               +G E         +   G  PD   + +L++++             K +  S   P
Sbjct: 245 GICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEP 304

Query: 572 DAATKELLKKSLWKEGRRKEAAAVEE 597
           +  T  +L  S  +EGR +EA  V E
Sbjct: 305 NVVTHSILISSFCREGRVREAVNVLE 330



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 86/198 (43%), Gaps = 8/198 (4%)

Query: 81  NADSALSIMEALKS--NPN-FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVS 137
           N   A+ +ME L++  +P+ +S+N     A+ +  +K+ +      +   + S  F    
Sbjct: 112 NLKKAMRVMEILETYGDPDVYSYN-----AMISGFSKANQIDSANQVFDRMRSRGFSPDV 166

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  ++    + G LEL     +E  +     S  +Y I++      G+  EA+E F +
Sbjct: 167 VTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDE 226

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++  G  P+  TY  +I  +   G  D AL+    L           Y IL+  F+   R
Sbjct: 227 LVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSR 286

Query: 258 FDEAKSLLNEMRDDGKFP 275
           +++ + L+ +M   G  P
Sbjct: 287 WEDGERLMKDMVLSGCEP 304



 Score = 40.0 bits (92), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 35/60 (58%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           S+NIV+    K  + FE +E    ++++G +PN  +Y ++IE +   G    A+E+ ++L
Sbjct: 483 SFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSYVLLIEGIAYAGWRAEAMELANSL 542


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 97/481 (20%), Positives = 190/481 (39%), Gaps = 50/481 (10%)

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           I+   F   +  F  L++     G +   L+ +++   R    S  +Y+I++    K   
Sbjct: 242 INGMPFPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESG 301

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
             +A+    ++  +G  P+  TY V+I  + N G +D AL + S LP    K  +  Y  
Sbjct: 302 YRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTP 361

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDK 306
           +++   G ER+ E + LL EM  +   P        +  + + G +  A E +  M    
Sbjct: 362 VLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHG 421

Query: 307 RIKNVRYYE---DGSDDDEDENDDNNSGVRI-AYGVQLKPWLDPKALANTLDEWSPEVVS 362
            + ++  Y    DG  D    +D      R+ +YG +                  P+ ++
Sbjct: 422 CVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCK------------------PDTIA 463

Query: 363 LLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHV 422
                 +    + +C   +  ++ E      C          D      ++  L + G V
Sbjct: 464 ------YTTVLKGLCSTEQWERAEELMAEMLCS-----DCPPDEVTFNTVVASLCQKGLV 512

Query: 423 ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFKLML 481
           +   R++ ++  +G      T   IID        D A++   D ++  C P      ++
Sbjct: 513 DRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPD-----IV 567

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
            +++LL+ L    R  DA  ++  M+ S   PD  TF+ ++     +G      +   ++
Sbjct: 568 TFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIM 627

Query: 542 RQNGVEPDAYMFKVLI---------QAYCKYLSN-SNLMPDAATKELLKKSLWKEGRRKE 591
            +NG  P++  + +++         QA  + LS  +N  PD  T   +  +L K G+ +E
Sbjct: 628 AENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNGTPDLITYNTVISNLTKAGKMEE 687

Query: 592 A 592
           A
Sbjct: 688 A 688



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 83/440 (18%), Positives = 181/440 (41%), Gaps = 60/440 (13%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++N +++   + G    A+E    + + G + +  TY+ +++ L ++G++D A+E+ S L
Sbjct: 393 TFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRL 452

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
                K  +  Y  +++G    E+++ A+ L+ EM      P            E+ F  
Sbjct: 453 KSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPP-----------DEVTFNT 501

Query: 294 GANEFLREMLPDKRIKNV-RYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
                 ++ L D+ I+ V +  E+G   D            + Y   +    +   + + 
Sbjct: 502 VVASLCQKGLVDRAIRVVEQMSENGCSPD-----------IVTYNCIIDGLCNESCIDDA 550

Query: 353 LDEWS--------PEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTH 404
           ++  S        P++V+      F    + +C V R   + +   +       +     
Sbjct: 551 MELLSDLQSCGCKPDIVT------FNTLLKGLCGVDRWEDAEQLMANMM-----RSNCPP 599

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           D      ++T L + G +      +  +  +G     ST  +++D    + KA AAL+  
Sbjct: 600 DELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALE-- 657

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
                L G  +    ++ Y++++  LTK  +  +A+++L  M+ +G+ PD  T+  L Y 
Sbjct: 658 ----LLSGMTNGTPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYG 713

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPD 572
              +       ++   V+  G+ PD   +  ++  +C+            ++ +S  MPD
Sbjct: 714 VCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPD 773

Query: 573 AATKELLKKSLWKEGRRKEA 592
            +T  +L ++L   G   EA
Sbjct: 774 ESTYVILLEALAYGGLLDEA 793



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 54/127 (42%), Gaps = 15/127 (11%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           ++ L+R L    R  DA+ V ++M+  G  P V T+S L+     +   +    L   +R
Sbjct: 254 FNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMR 313

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
             G EPD   + VLI A C              L +    PDA T   + KSL    R K
Sbjct: 314 AKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWK 373

Query: 591 EAAAVEE 597
           E   VEE
Sbjct: 374 E---VEE 377



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 82/202 (40%), Gaps = 25/202 (12%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL--IIDFYGISKKAD 458
           G +  V     M+    R G +E   RLI     +GM  P  T     +I    +  +  
Sbjct: 214 GPSATVVTYNTMVNGYCRAGRIEDARRLI-----NGMPFPPDTFTFNPLIRALCVRGRIP 268

Query: 459 AALKAFHDD-RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
            AL  F D     C P      ++ YS LL    K      A+ +L+EM   G  PD+ T
Sbjct: 269 DALAVFDDMLHRGCSPS-----VVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVT 323

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LS 565
           ++ L+     +GD      + S +  +G +PDA  +  ++++ C              ++
Sbjct: 324 YNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMT 383

Query: 566 NSNLMPDAATKELLKKSLWKEG 587
           ++N  PD  T   +  SL ++G
Sbjct: 384 SNNCAPDEVTFNTIVTSLCQQG 405



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 91/503 (18%), Positives = 194/503 (38%), Gaps = 37/503 (7%)

Query: 67  LDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHEL 121
            +P IVT+     A+ +  + D AL+I+  L S+     +  T   +   L  S+R  E+
Sbjct: 317 CEPDIVTYNVLINAMCNEGDVDEALNILSNLPSH-GCKPDAVTYTPVLKSLCGSERWKEV 375

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
           + L+ +++S+      V F  ++      G ++  +   +   +   +    +Y+ ++  
Sbjct: 376 EELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDG 435

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
               G+  +AVE   ++   G  P++  YT +++ L +  + + A E+ + +        
Sbjct: 436 LCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPD 495

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLR 300
              +  +V         D A  ++ +M ++G  P        ++ +     I  A E L 
Sbjct: 496 EVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLS 555

Query: 301 EML-----PD--------KRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPK 347
           ++      PD        K +  V  +ED      +    N     + +   +       
Sbjct: 556 DLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKG 615

Query: 348 ALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY 407
            L   +     E + ++A+   V  +     V+        A      ++     T D+ 
Sbjct: 616 LLTQAI-----ETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNGTPDLI 670

Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK--ADAALKAFH 465
               +++ L + G +E    L+  + S+G+    +T R +   YG+ ++   D A++   
Sbjct: 671 TYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLA--YGVCREDGTDRAVRMLR 728

Query: 466 --DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
              D  L  P + F     Y+ +L    + +R   AI+    M+ SG +PD  T+  L+ 
Sbjct: 729 RVQDTGL-SPDTTF-----YNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLE 782

Query: 524 HFALQGDEKIVQKLFSMVRQNGV 546
             A  G     ++L + +   GV
Sbjct: 783 ALAYGGLLDEAKRLLASLCSLGV 805



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 97/250 (38%), Gaps = 17/250 (6%)

Query: 31  NKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSA 85
           N +   L +  L+D     V   S N  S         P IVT+      L +    D A
Sbjct: 500 NTVVASLCQKGLVDRAIRVVEQMSENGCS---------PDIVTYNCIIDGLCNESCIDDA 550

Query: 86  LSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQ 145
           + ++  L+S      +  T + L   L    R  + + L+ ++  S      + F  ++ 
Sbjct: 551 MELLSDLQSC-GCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVIT 609

Query: 146 WYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP 205
                G L   + T     +   + ++ +Y+IV+    K GK   A+E    + +    P
Sbjct: 610 SLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTN--GTP 667

Query: 206 NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL 265
           +  TY  +I +L   GK++ AL++   +    +   +  Y  L  G    +  D A  +L
Sbjct: 668 DLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRML 727

Query: 266 NEMRDDGKFP 275
             ++D G  P
Sbjct: 728 RRVQDTGLSP 737


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 95/480 (19%), Positives = 186/480 (38%), Gaps = 65/480 (13%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           +V +  ++  +   GD +     ++E  +        ++N ++    K G   E+   F 
Sbjct: 260 AVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFD 319

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           +V+  G  PN  T+ + I+ L   G LD A+ +   +    ++     Y  ++ G     
Sbjct: 320 KVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKS 379

Query: 257 RFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREML-----PDKRIKN 310
           R  EA+  L++M + G  P        ++   + G +  AN  L++ +     PD+    
Sbjct: 380 RVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYC 439

Query: 311 VRYYEDGSDDDEDE-----NDDNNSGVR---IAYGVQLKPWLDPKALANTLDEWSPEVVS 362
                   D D D+      D    G+R   I Y   +K       +   L     ++++
Sbjct: 440 SLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPAL-----QLMN 494

Query: 363 LLADAKF---VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH 419
            +A+      +WT  L+   L        A H     A   G   D++    ++    R 
Sbjct: 495 EMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLI-GDAITKGCIPDIFTYNTLVDGYCRQ 553

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFK 478
             ++    L+ ++ S GM     T   +++    + K++  ++ F       C P     
Sbjct: 554 LKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPN---- 609

Query: 479 LMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD-------- 530
            ++ Y++++ +L   K+  +A+++L EM   G+ PDV +F  L+  F   GD        
Sbjct: 610 -IITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLF 668

Query: 531 ----------------------------EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
                                        K+  +LFS +++NG +PD Y ++VLI  +CK
Sbjct: 669 RGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCK 728



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 94/533 (17%), Positives = 203/533 (38%), Gaps = 75/533 (14%)

Query: 93  KSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN--FMNLMQWYSTS 150
           K+   F H   T  ++   L    + +E++ L+ ++ S+   N  +   ++  M++Y   
Sbjct: 110 KTKQGFKHTLFTYKSMLQKLGFHGKFNEMENLLSEMRSN-LDNTLLEGVYVEAMRFYGRK 168

Query: 151 GDLELVLSTWNEYRQRAKLLSTE----SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206
           G ++  + T+    +R  L + +    SYN +M++  + G   +A + + ++ D+    +
Sbjct: 169 GKIQEAVDTF----ERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESD 224

Query: 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
             TYT+ I+     G+  +AL +   +P++     +  Y  +V GF      D A+ L +
Sbjct: 225 VYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFD 284

Query: 267 EMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY--------EDG 317
           EM +    P        +  + + GF+  +     ++L      N+  +        ++G
Sbjct: 285 EMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEG 344

Query: 318 SDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVC 377
           S D                 V+L   +  + L        P+VV+            ++C
Sbjct: 345 SLDR---------------AVRLLGCVSREGL-------RPDVVTY---------NTVIC 373

Query: 378 KVLRHFK--SPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
            + R  +    E   H      ++P    + +    ++    + G V   +R++      
Sbjct: 374 GLCRKSRVVEAEECLHKMVNGGFEP----NDFTYNSIIDGYCKKGMVVDANRILKDAVFK 429

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFK-LMLLYSSLLRTLTKCK 494
           G +    T   +++ +      D A+  F D     G     +  +++Y++L++ L +  
Sbjct: 430 GFKPDEFTYCSLVNGFCQDGDPDQAMAVFKD-----GLGKGLRPSIIVYNTLIKGLCQQG 484

Query: 495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK 554
               A+ ++ EM   G  PD+ T++ ++      G       L       G  PD + + 
Sbjct: 485 LILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYN 544

Query: 555 VLIQAYCKYLS------------NSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
            L+  YC+ L             +  + PD  T   L   L K  + +E   +
Sbjct: 545 TLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEI 597



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 4/164 (2%)

Query: 105 LHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYR 164
           ++ L  +   S  NH    LIGD  +   +     +  L+  Y     L+  +   N   
Sbjct: 512 INGLCKMGCLSDANH----LIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMW 567

Query: 165 QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
            +       +YN +++   KT K+ E +E F+ + ++G  PN  TY  +IE L N  K++
Sbjct: 568 SQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVN 627

Query: 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
            A+++   +    +      +  L+ GF  V   D A  L   M
Sbjct: 628 EAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGM 671



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 39/194 (20%), Positives = 88/194 (45%), Gaps = 13/194 (6%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNP 96
           L+D     ++ +S+  L + +  + + P ++T+      L     ++  + I +A+ +  
Sbjct: 546 LVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAM-TEK 604

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
             + N  T + +   L  S++ +E   L+G++ S       V+F  L+  +   GDL+  
Sbjct: 605 GCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLD-- 662

Query: 157 LSTWNEYRQRAKLL----STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
              +  +R   K      +T +YNI++S +++      A+  F ++   G  P++ TY V
Sbjct: 663 -GAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRV 721

Query: 213 MIEHLVNLGKLDSA 226
           +I+     G ++  
Sbjct: 722 LIDGFCKTGNVNQG 735


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 96/442 (21%), Positives = 176/442 (39%), Gaps = 56/442 (12%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SY  V++ + K G   +A  T+ +++D G +PN  TY+ +I  L     +D A+EV +++
Sbjct: 201 SYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSM 260

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
               +    + Y  +V G+    +  EA   L +M  DG  P                + 
Sbjct: 261 VKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD---------------VV 305

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVR---IAYGVQLKPWLDPKALA 350
             N  +  +  + R    R   D              G++     YG  L+ +    AL 
Sbjct: 306 TYNSLMDYLCKNGRCTEARKMFDSM---------TKRGLKPEITTYGTLLQGYATKGALV 356

Query: 351 NTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
                    V + +    +V++  L+C   +  K  +    F      Q G   D     
Sbjct: 357 EMHGLLDLMVRNGIHPNHYVFSI-LICAYAKQGKVDQAMLVF--SKMRQQGLNPDTVTYG 413

Query: 411 KMLTILARHGHVE----LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD 466
            ++ IL + G VE      +++I +  S G  +  S I  +  F    K  +  L+    
Sbjct: 414 TVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML-- 471

Query: 467 DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
           DR +C         + ++S++ +  K  R  ++  + + M+  G+ PD+ T+S L+  + 
Sbjct: 472 DRGICLDT------IFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYC 525

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAA 574
           L G      KL + +   G++PD   +  LI  YCK             + +S + PD  
Sbjct: 526 LAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDII 585

Query: 575 TKELLKKSLWKEGRRKEAAAVE 596
           T  ++ + L++   R+ AAA E
Sbjct: 586 TYNIILQGLFQT--RRTAAAKE 605



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 110/522 (21%), Positives = 205/522 (39%), Gaps = 43/522 (8%)

Query: 64  DRLLDPFIVTH-----ALRSAPNADSALSIMEALKSN---PNFSHNQSTLHALATVLAKS 115
           DR + P +VT+     AL  A   D A+ ++ ++  N   PN     S +H   +    S
Sbjct: 227 DRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCS----S 282

Query: 116 QRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
            +  E    +  + S       V + +LM +   +G        ++   +R       +Y
Sbjct: 283 GQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTY 342

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
             ++  YA  G   E       ++  G  PN   ++++I      GK+D A+ VFS +  
Sbjct: 343 GTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQ 402

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQG 294
             +   +  Y  ++       R ++A     +M D+   PG  +  +L   +        
Sbjct: 403 QGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDK 462

Query: 295 ANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSG------VRIAYG---VQLKPWLD 345
           A E + EML      +  ++    D    E     S       VRI      +     +D
Sbjct: 463 AKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLID 522

Query: 346 PKALANTLDEWS---PEVVSLLADAKFVWTTRLV---CKVLRHFKSPETAWHFFCWVAYQ 399
              LA  +DE +     +VS+      V    L+   CK+ R     E A   F  +   
Sbjct: 523 GYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRM----EDALVLFREME-S 577

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK--A 457
            G + D+     +L  L +         L   +   G +L  ST  +I+  +G+ K    
Sbjct: 578 SGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIIL--HGLCKNNLT 635

Query: 458 DAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
           D AL+ F +   LC  ++  +L    ++ ++  L K  R+ +A ++   +  +G+VPDV+
Sbjct: 636 DEALRMFQN---LC--LTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVR 690

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           T+S +  +   QG  + +  LF  + +NG   ++ M   +++
Sbjct: 691 TYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVR 732



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 105/554 (18%), Positives = 211/554 (38%), Gaps = 59/554 (10%)

Query: 77  RSAPNADSALSIMEALKSNPN-FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLN 135
           R++   D  L  M  L   PN FS+N   L  L     +SQ   EL  ++ D       +
Sbjct: 141 RTSDAMDIVLRRMTQLGCIPNVFSYN-ILLKGLCDE-NRSQEALELLQMMPDDGGDCPPD 198

Query: 136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF 195
           V V++  ++  +   GDL+    T++E   R  L +  +Y+ +++   K     +A+E  
Sbjct: 199 V-VSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVL 257

Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
             ++  G +PN RTY  ++    + G+   A+     +    ++     Y  L++     
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 256 ERFDEAKSLLNEMRDDGKFP----------GRAMRVALERMQEMGFIQGANEFLREMLPD 305
            R  EA+ + + M   G  P          G A + AL  M  +  +   N     + P+
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN----GIHPN 373

Query: 306 KRIKNV---RYYEDGSDD----------DEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
             + ++    Y + G  D           +  N D      + YG  +        + + 
Sbjct: 374 HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDT-----VTYGTVIGILCKSGRVEDA 428

Query: 353 LDEWSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
           +  +   +   L+    V+ + +  +C   +  K+ E             G   D     
Sbjct: 429 MRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML-----DRGICLDTIFFN 483

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470
            ++    + G V   ++L   +   G++    T   +ID Y ++ K D A K      + 
Sbjct: 484 SIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVS- 542

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
              +      + Y++L+    K  R  DA+ +  EM  SG+ PD+ T++ ++        
Sbjct: 543 ---VGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRR 599

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKEL 578
               ++L+  + ++G + +   + +++   CK             L  ++L  +  T  +
Sbjct: 600 TAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNI 659

Query: 579 LKKSLWKEGRRKEA 592
           +  +L K GR  EA
Sbjct: 660 MIGALLKVGRNDEA 673


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 100/465 (21%), Positives = 180/465 (38%), Gaps = 111/465 (23%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAI-PNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           +YN +++ Y   G+    ++  R+++ E  + P++ TY  +I  L   G+  +AL V   
Sbjct: 128 AYNAMVAGYCGAGQ----LDAARRLVAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDE 183

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGF 291
           +   R       Y IL+E       + +A  LL+EMRD G  P      V +  + + G 
Sbjct: 184 MLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGR 243

Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKP------WLD 345
           +  A EFL         KN+  Y  G + +            ++Y + LK       W D
Sbjct: 244 VDDAIEFL---------KNLPSY--GCEPNT-----------VSYNIVLKGLCTAERWED 281

Query: 346 PKALANTLDE--WSPEVVSLLADAKFVWTTRLVCKVL-------RHFKSPETA-----WH 391
            + L   + +    P VV+      F+    LV   L       ++  +P +       H
Sbjct: 282 AEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLH 341

Query: 392 FFCW------------VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
            FC             +    G   D+ +   +LT L R G V++   L+ +L+  G   
Sbjct: 342 AFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKG--- 398

Query: 440 PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDA 499
                                          C P+     ++ Y++++  LTK  +  +A
Sbjct: 399 -------------------------------CAPV-----LISYNTVIDGLTKAGKTKEA 422

Query: 500 INVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
           + +L EM+  G+ PD+ T+S +      +   +   + F  V+  G+ P+  ++  +I  
Sbjct: 423 LELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILG 482

Query: 560 YCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
            CK            Y+  +  MP+ +T  +L + L  EG  KEA
Sbjct: 483 LCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEA 527



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 65/137 (47%)

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
            +  L++     G     L+  +E  +R  +    +Y I++    K     +A++   ++
Sbjct: 160 TYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEM 219

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
            D+G  P+  TY V++  +   G++D A+E    LP    +  +  Y I+++G    ER+
Sbjct: 220 RDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERW 279

Query: 259 DEAKSLLNEMRDDGKFP 275
           ++A+ L+ EM   G  P
Sbjct: 280 EDAEELMGEMGQKGCPP 296



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/224 (20%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 83  DSALSIMEAL---KSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
           + AL ++E +      PN       LHA      + + +  +  L   +S   + ++ V+
Sbjct: 315 EPALEVLEQIPKYGCTPNSLSYNPLLHAFCK---QKKMDKAMAFLDLMVSRGCYPDI-VS 370

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  L+     SG++++ +   ++ + +       SYN V+    K GK  EA+E   +++
Sbjct: 371 YNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMV 430

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
            +G  P+  TY+ +   L    +++ A+  F  +  M I+  +  Y  ++ G        
Sbjct: 431 SKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETH 490

Query: 260 EAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
            A  L   M  +G  P  +   + +E +   G I+ A + L E+
Sbjct: 491 SAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDEL 534



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 50/105 (47%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           +T SYNIV+       +  +A E   ++  +G  PN  T+ ++I  L   G ++ ALEV 
Sbjct: 262 NTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVL 321

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             +P       S  Y  L+  F   ++ D+A + L+ M   G +P
Sbjct: 322 EQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYP 366



 Score = 45.4 bits (106), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 40/199 (20%), Positives = 82/199 (41%), Gaps = 1/199 (0%)

Query: 74  HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKF 133
           HA       D A++ ++ + S   +  +  + + L T L +S        L+  +     
Sbjct: 341 HAFCKQKKMDKAMAFLDLMVSRGCYP-DIVSYNTLLTALCRSGEVDVAVELLHQLKDKGC 399

Query: 134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE 193
             V +++  ++   + +G  +  L   NE   +       +Y+ + +   +  +  +A+ 
Sbjct: 400 APVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIR 459

Query: 194 TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
            F +V D G  PN+  Y  +I  L    +  SA+++F+ +           Y IL+EG  
Sbjct: 460 AFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLA 519

Query: 254 GVERFDEAKSLLNEMRDDG 272
                 EA+ LL+E+   G
Sbjct: 520 YEGLIKEARDLLDELCSRG 538


>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 108/538 (20%), Positives = 212/538 (39%), Gaps = 73/538 (13%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           + A  + E +K+   FS ++ T +AL  V  KS+R  E   ++ ++ +S F    V + +
Sbjct: 308 EEAAEVFEEMKA-AGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNS 366

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  Y+  G L+  +   ++  ++       +Y  ++S + KTGK+  A++ F ++   G
Sbjct: 367 LISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAG 426

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI--KRTSKQYLILVEGFVGVERFDE 260
             PN  T+  +I+   N G     ++VF  + +        +   L+ V G  G++   E
Sbjct: 427 CQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMD--SE 484

Query: 261 AKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSD 319
              +  EM+  G  P R      +      GF   A    R ML      ++  Y     
Sbjct: 485 VSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTY----- 539

Query: 320 DDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKV 379
                   N     +A G               L E S +V++ + D +        C +
Sbjct: 540 --------NAVLAALARG--------------GLWEQSEKVLAEMKDGRCKPNELTYCSL 577

Query: 380 LRHFKSPETAWHFFCWVAYQPGYTHDVYA---------LEKMLTILARHGHVELVDRLIA 430
           L  + + +        V        ++Y+         L+ ++ + ++   +   +R   
Sbjct: 578 LHAYANGKE-------VERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFL 630

Query: 431 KLRSDGMRLPFSTIRLIIDFYG---ISKKADAALKAFHDDRTLCGPISKFKLML-LYSSL 486
           +LR  G     +T+  ++  YG   +  K +  L    D        S F   L  Y+SL
Sbjct: 631 ELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKD--------SGFTPSLTTYNSL 682

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           +   ++ +    + ++L E+I  G+ PD+ +F+ +++ +   G  K   ++F+ ++  G+
Sbjct: 683 MYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGL 742

Query: 547 EPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
            PD   +   I +Y             KY+  +   P+  T   L     K  RR EA
Sbjct: 743 APDVITYNTFIASYASDSMFIEAIDVVKYMIKNECKPNQNTYNSLIDWFCKLNRRDEA 800



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/218 (20%), Positives = 93/218 (42%), Gaps = 23/218 (10%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G+   +     +++  AR G ++    L +++   G++    T   ++  +  + K D A
Sbjct: 356 GFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYA 415

Query: 461 LKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           +K F + R   C P      +  +++L++         + + V EE+     VPD+ T++
Sbjct: 416 MKVFEEMRVAGCQPN-----ICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWN 470

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY--CKYLS----------NS 567
            L+  F   G +  V  +F  +++ G  P+   F  LI AY  C +            ++
Sbjct: 471 TLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDA 530

Query: 568 NLMPDAAT-----KELLKKSLWKEGRRKEAAAVEERCE 600
            + PD +T       L +  LW++  +  A   + RC+
Sbjct: 531 GVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCK 568



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 1/193 (0%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
            FS + +TL+A+ ++  + +   +   ++  I  S F      + +LM  YS +   E  
Sbjct: 636 GFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKS 695

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
                E   +       S+N V+  Y + G+  EA   F ++ D G  P+  TY   I  
Sbjct: 696 EDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIAS 755

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD-DGKFP 275
             +      A++V   +     K     Y  L++ F  + R DEA S ++ +R+ D    
Sbjct: 756 YASDSMFIEAIDVVKYMIKNECKPNQNTYNSLIDWFCKLNRRDEANSFISNLRNLDPSVT 815

Query: 276 GRAMRVALERMQE 288
               R  LER+ +
Sbjct: 816 KDEERRLLERLNK 828



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/219 (21%), Positives = 89/219 (40%), Gaps = 18/219 (8%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D+Y    +++   R    E    +  ++++ G      T   ++D YG S++   A
Sbjct: 286 GVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREA 345

Query: 461 LKAFHDDRTLCGPISKF-KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           ++   +        S F   ++ Y+SL+    +     +A+ +  +M+  GI PDV T++
Sbjct: 346 MEVLKEMEA-----SGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYT 400

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM--------- 570
            L+  F   G +    K+F  +R  G +P+   F  LI+ +    +   +M         
Sbjct: 401 TLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKIC 460

Query: 571 ---PDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
              PD  T   L     + G   E + V +  ++   VP
Sbjct: 461 ECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVP 499



 Score = 42.4 bits (98), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 40/193 (20%), Positives = 82/193 (42%), Gaps = 13/193 (6%)

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGY----THDVYALEKMLTILARHGHVELVDRLIAK 431
           + K L  +K  E A   F +V  +  +    ++ V A+  ++++L + G       L+  
Sbjct: 153 IIKGLVFYKKNELALCVFYFVRNREDFASILSNSVVAV--IISVLGKEGRASFAASLLHD 210

Query: 432 LRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTL 490
           LR+DG+ +       +I  Y  + +   A+  F   +   C P      ++ Y+ +L   
Sbjct: 211 LRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPT-----LITYNVILNVY 265

Query: 491 TKCKRDFDAI-NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
            K    +  I  +++ M  SG+ PD+ T++ L+         +   ++F  ++  G  PD
Sbjct: 266 GKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPD 325

Query: 550 AYMFKVLIQAYCK 562
              +  L+  Y K
Sbjct: 326 KVTYNALLDVYGK 338



 Score = 42.0 bits (97), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 46/236 (19%), Positives = 94/236 (39%), Gaps = 3/236 (1%)

Query: 43  IDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSH-- 100
           +D I L +   SS+ L+   +    D   +   L      + AL +   +++  +F+   
Sbjct: 124 LDEILLQLFETSSDGLNFTSDSVSFDILGIIKGLVFYKKNELALCVFYFVRNREDFASIL 183

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           + S +  + +VL K  R     +L+ D+ +         + +L+  Y+++G     +  +
Sbjct: 184 SNSVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVF 243

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI-DEGAIPNSRTYTVMIEHLVN 219
            +  +     +  +YN++++VY K G  +  +      +   G  P+  TY  +I     
Sbjct: 244 KKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRR 303

Query: 220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               + A EVF  +           Y  L++ +    R  EA  +L EM   G  P
Sbjct: 304 GSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAP 359


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 96/442 (21%), Positives = 176/442 (39%), Gaps = 56/442 (12%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SY  V++ + K G   +A  T+ +++D G +PN  TY+ +I  L     +D A+EV +++
Sbjct: 201 SYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSM 260

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
               +    + Y  +V G+    +  EA   L +M  DG  P                + 
Sbjct: 261 VKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD---------------VV 305

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVR---IAYGVQLKPWLDPKALA 350
             N  +  +  + R    R   D              G++     YG  L+ +    AL 
Sbjct: 306 TYNSLMDYLCKNGRCTEARKMFDSM---------TKRGLKPEITTYGTLLQGYATKGALV 356

Query: 351 NTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
                    V + +    +V++  L+C   +  K  +    F      Q G   D     
Sbjct: 357 EMHGLLDLMVRNGIHPNHYVFSI-LICAYAKQGKVDQAMLVF--SKMRQQGLNPDTVTYG 413

Query: 411 KMLTILARHGHVE----LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD 466
            ++ IL + G VE      +++I +  S G  +  S I  +  F    K  +  L+    
Sbjct: 414 TVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML-- 471

Query: 467 DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
           DR +C         + ++S++ +  K  R  ++  + + M+  G+ PD+ T+S L+  + 
Sbjct: 472 DRGICLDT------IFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYC 525

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAA 574
           L G      KL + +   G++PD   +  LI  YCK             + +S + PD  
Sbjct: 526 LAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDII 585

Query: 575 TKELLKKSLWKEGRRKEAAAVE 596
           T  ++ + L++   R+ AAA E
Sbjct: 586 TYNIILQGLFQT--RRTAAAKE 605



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 110/524 (20%), Positives = 206/524 (39%), Gaps = 47/524 (8%)

Query: 64  DRLLDPFIVTH-----ALRSAPNADSALSIMEALKSN---PNFSHNQSTLHALATVLAKS 115
           DR + P +VT+     AL  A   D A+ ++ ++  N   PN     S +H   +    S
Sbjct: 227 DRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCS----S 282

Query: 116 QRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
            +  E    +  + S       V + +LM +   +G        ++   +R       +Y
Sbjct: 283 GQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTY 342

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
             ++  YA  G   E       ++  G  PN   ++++I      GK+D A+ VFS +  
Sbjct: 343 GTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQ 402

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFI--- 292
             +   +  Y  ++       R ++A     +M D+   PG  +  +L  +  +      
Sbjct: 403 QGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSL--IHSLCIFDKW 460

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSG------VRIAYG---VQLKPW 343
             A E + EML      +  ++    D    E     S       VRI      +     
Sbjct: 461 DKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTL 520

Query: 344 LDPKALANTLDEWS---PEVVSLLADAKFVWTTRLV---CKVLRHFKSPETAWHFFCWVA 397
           +D   LA  +DE +     +VS+      V    L+   CK+ R     E A   F  + 
Sbjct: 521 IDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRM----EDALVLFREME 576

Query: 398 YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK- 456
              G + D+     +L  L +         L   +   G +L  ST  +I+  +G+ K  
Sbjct: 577 -SSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIIL--HGLCKNN 633

Query: 457 -ADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
             D AL+ F +   LC  ++  +L    ++ ++  L K  R+ +A ++   +  +G+VPD
Sbjct: 634 LTDEALRMFQN---LC--LTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPD 688

Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           V+T+S +  +   QG  + +  LF  + +NG   ++ M   +++
Sbjct: 689 VRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVR 732



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 105/554 (18%), Positives = 211/554 (38%), Gaps = 59/554 (10%)

Query: 77  RSAPNADSALSIMEALKSNPN-FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLN 135
           R++   D  L  M  L   PN FS+N   L  L     +SQ   EL  ++ D       +
Sbjct: 141 RTSDAMDIVLRRMTQLGCIPNVFSYN-ILLKGLCDE-NRSQEALELLQMMPDDGGDCPPD 198

Query: 136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF 195
           V V++  ++  +   GDL+    T++E   R  L +  +Y+ +++   K     +A+E  
Sbjct: 199 V-VSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVL 257

Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
             ++  G +PN RTY  ++    + G+   A+     +    ++     Y  L++     
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 256 ERFDEAKSLLNEMRDDGKFP----------GRAMRVALERMQEMGFIQGANEFLREMLPD 305
            R  EA+ + + M   G  P          G A + AL  M  +  +   N     + P+
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN----GIHPN 373

Query: 306 KRIKNV---RYYEDGSDD----------DEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
             + ++    Y + G  D           +  N D      + YG  +        + + 
Sbjct: 374 HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDT-----VTYGTVIGILCKSGRVEDA 428

Query: 353 LDEWSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
           +  +   +   L+    V+ + +  +C   +  K+ E             G   D     
Sbjct: 429 MRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML-----DRGICLDTIFFN 483

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470
            ++    + G V   ++L   +   G++    T   +ID Y ++ K D A K      + 
Sbjct: 484 SIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVS- 542

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
              +      + Y++L+    K  R  DA+ +  EM  SG+ PD+ T++ ++        
Sbjct: 543 ---VGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRR 599

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKEL 578
               ++L+  + ++G + +   + +++   CK             L  ++L  +  T  +
Sbjct: 600 TAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNI 659

Query: 579 LKKSLWKEGRRKEA 592
           +  +L K GR  EA
Sbjct: 660 MIGALLKVGRNDEA 673


>gi|115482066|ref|NP_001064626.1| Os10g0421800 [Oryza sativa Japonica Group]
 gi|113639235|dbj|BAF26540.1| Os10g0421800, partial [Oryza sativa Japonica Group]
          Length = 973

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 118/554 (21%), Positives = 224/554 (40%), Gaps = 87/554 (15%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           V HALRSA     AL    +    P  +H  ++ + +  ++    R  ++  +  D+   
Sbjct: 95  VIHALRSADGPAEALERFRSAARKPRVAHTTASCNYMLELMRGHGRVGDMAEVF-DVMQR 153

Query: 132 KFLNVSVN-FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           + +  +V  F  +       G L          ++   +L+  +YN ++    K+G + E
Sbjct: 154 QIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDRE 213

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK---LDSALEVFSALPLMRIKRTSKQYLI 247
           A+E +R ++ +G +P+ RTY+V+   +V  GK   +++ L +   +    +K     Y I
Sbjct: 214 ALEVYRVMMVDGVVPSVRTYSVL---MVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTI 270

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR-VALERMQEMGFIQGANEFLREM-LPD 305
            +      +RFDEA  +L +M ++G  P      V ++ + + G I  A +   +M   D
Sbjct: 271 CIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSD 330

Query: 306 KRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLA 365
           ++   V Y      D   +N D+ S + I        W   KA     D ++  VV+  A
Sbjct: 331 QKPDRVTYIT--LLDKFGDNGDSQSVMEI--------WNAMKA-----DGYNDNVVAYTA 375

Query: 366 DAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELV 425
                     +C+V R F++ E           Q G   + Y+   +++   +       
Sbjct: 376 ------VIDALCQVGRVFEALEMFDEM-----KQKGIVPEQYSYNSLISGFLKADRFGDA 424

Query: 426 DRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSS 485
             L   +   G +    T  L I++YG   K+  ++KA          I +++LM     
Sbjct: 425 LELFKHMDIHGPKPNGYTHVLFINYYG---KSGESIKA----------IQRYELM----- 466

Query: 486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
                 K K               GIVPDV   + +++  A  G   + +++F  ++  G
Sbjct: 467 ------KSK---------------GIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMG 505

Query: 546 VEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
           V PD   + ++I+   K             +  +N +PD      L  +L+K GR  EA 
Sbjct: 506 VSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAW 565

Query: 594 AVEERCEKINDVPS 607
            +  + +++N  P+
Sbjct: 566 RIFYQLKEMNLEPT 579



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 83/200 (41%), Gaps = 8/200 (4%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I    L  A   D A  I+  ++ N     +  T   L  VL  + R  + K +   +  
Sbjct: 270 ICIRVLGQAKRFDEAYRILAKME-NEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKK 328

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           S      V ++ L+  +  +GD + V+  WN  +      +  +Y  V+    + G+ FE
Sbjct: 329 SDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFE 388

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV- 249
           A+E F ++  +G +P   +Y  +I   +   +   ALE+F  + +   K     +++ + 
Sbjct: 389 ALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFIN 448

Query: 250 ------EGFVGVERFDEAKS 263
                 E    ++R++  KS
Sbjct: 449 YYGKSGESIKAIQRYELMKS 468



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 69/390 (17%), Positives = 154/390 (39%), Gaps = 34/390 (8%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN +++   + GK  E +    ++      PN  TY  +++ L   G ++ AL++  ++
Sbjct: 582 TYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSM 641

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA-MRVALERMQEMGFI 292
                      Y  ++ G V  ER++EA S+  +M+     P  A +   L    ++G +
Sbjct: 642 TTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKV-LIPDYATLCTILPSFVKIGLM 700

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
           + A   +++           + + GS  D         G+    G+              
Sbjct: 701 KEALHIIKDY----------FLQPGSKTDRSSCHSLMEGILKKAGI-------------- 736

Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW--HFFCWVAYQPGYTHDVYALE 410
             E S E   ++A +        +C +++H    + A   H         G +       
Sbjct: 737 --EKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYN 794

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470
            ++  L     +++ + L A+++  G      T  L++D  G S + +  LK   ++   
Sbjct: 795 SLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKV-QEEMHR 853

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
            G  S +   + Y++++  L K +R   AI++   ++  G  P   T+  L+      G 
Sbjct: 854 KGYESTY---VTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGR 910

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
            +  + LF+ + + G + +  ++ +L+  +
Sbjct: 911 IEDAENLFNEMLEYGCKANCTIYNILLNGH 940



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/112 (21%), Positives = 54/112 (48%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T + + + L KS+R  +   L  ++ S  F      +  L+     +G +E   + +NE 
Sbjct: 862 TYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEM 921

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
            +     +   YNI+++ +   G   +    F+ ++D+G  P+ ++YT++I+
Sbjct: 922 LEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIID 973


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 99/459 (21%), Positives = 187/459 (40%), Gaps = 32/459 (6%)

Query: 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
           +TL  L T   +  ++ +   L     S         F  L+     SG+ E     + +
Sbjct: 31  NTLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKK 90

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
             Q+   L   +YN+++  + ++G+   A+E FR++  +G+ P+  TY  ++  L   G+
Sbjct: 91  LVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGR 150

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RV 281
           +  A   F A+    +      Y +L++ F  V + D A  L  EM+  G  P      +
Sbjct: 151 VQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNI 210

Query: 282 ALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLK 341
            L+ +   G +  A +   +M  D    +   Y          N    SG R+    ++ 
Sbjct: 211 LLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLV------NGLGKSG-RVEEAHKVF 263

Query: 342 PWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPG 401
             +  + +A  L  ++    SLLA          V K+++                 + G
Sbjct: 264 REMVDRGVAVDLVNYN----SLLATLAKAGNMDRVWKLMKEMS--------------RKG 305

Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA- 460
           +  D ++   ++  L +    +    + A++   G +    +  ++ID Y  ++  DAA 
Sbjct: 306 FHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSY--ARFGDAAQ 363

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
            +   ++    G I + K    Y+SL+  L    +  +A  VLEEM  +G  PDV T++ 
Sbjct: 364 ARQMLEEMVEAGFIPETK---TYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNR 420

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
           LM     +G+ +   +LF  ++  GVEPD   + V I  
Sbjct: 421 LMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDG 459



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 87/427 (20%), Positives = 174/427 (40%), Gaps = 48/427 (11%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L++++  SG L+  +  + E + +       +Y  +++   K G+  EA   F  +++ G
Sbjct: 106 LIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERG 165

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             PN  TY ++++    +G+LD AL +F+ +     + +   Y IL++      R   A+
Sbjct: 166 LTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAAR 225

Query: 263 SLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDD 321
            L ++M  DG  P       L   + + G ++ A++  REM+                  
Sbjct: 226 KLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMV------------------ 267

Query: 322 EDENDDNNSGVRIAYGVQLKPWLDPKALANTLDE-WSPEVVSLLADAKF---VWTTRLVC 377
                  + GV +   V     L   A A  +D  W  +++  ++   F    ++   + 
Sbjct: 268 -------DRGVAVDL-VNYNSLLATLAKAGNMDRVW--KLMKEMSRKGFHPDAFSFNTIM 317

Query: 378 KVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM 437
             L     P+ A   F  +  + G   D+ +   ++   AR G      +++ ++   G 
Sbjct: 318 DALGKANKPDAAREVFARMV-ESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGF 376

Query: 438 RLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRD 496
                T   +I +     + D A     +  T  C P      ++ Y+ L+  L K   +
Sbjct: 377 IPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPD-----VVTYNRLMDMLGKRGEN 431

Query: 497 FDAINVLEEMIFSGIVPDVQTFS----GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYM 552
             A  + ++M   G+ PD  +++    GL +   L  DE +V  LF  ++  G   D  M
Sbjct: 432 QRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRL--DEALV--LFKDMKAVGCPVDKAM 487

Query: 553 FKVLIQA 559
           +++LI+A
Sbjct: 488 YRILIRA 494



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 90/202 (44%), Gaps = 16/202 (7%)

Query: 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465
           V+A  K++ IL   G  E  + +  KL   G +L      ++I ++G S + D+A++ F 
Sbjct: 65  VHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFR 124

Query: 466 DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF 525
           + +       ++     Y  L+  L K  R  +A +  + M+  G+ P++ T++ LM  F
Sbjct: 125 EMKIKGSEPDEYT----YGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAF 180

Query: 526 ALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDA 573
              G   +   LF+ +++ G +P    + +L+ A C              ++     PD+
Sbjct: 181 RKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDS 240

Query: 574 ATKELLKKSLWKEGRRKEAAAV 595
            T   L   L K GR +EA  V
Sbjct: 241 YTYSTLVNGLGKSGRVEEAHKV 262



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 91/413 (22%), Positives = 158/413 (38%), Gaps = 41/413 (9%)

Query: 83  DSALSIMEALK---SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
           DSA+ +   +K   S P+    + T   L   L K+ R  E ++   D    + L  ++ 
Sbjct: 117 DSAMEMFREMKIKGSEPD----EYTYGFLVNALGKAGRVQEARSFF-DAMLERGLTPNIP 171

Query: 140 FMNL-MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
             NL M  +   G L++ L  + E ++R    S  +YNI++      G+   A + F ++
Sbjct: 172 TYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKM 231

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
             +G  P+S TY+ ++  L   G+++ A +VF  +    +      Y  L+         
Sbjct: 232 TGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNM 291

Query: 259 DEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPD-KRIKNVRYYEDG 317
           D    L+ EM   G  P      A      M  +  AN+      PD  R    R  E G
Sbjct: 292 DRVWKLMKEMSRKGFHPD-----AFSFNTIMDALGKANK------PDAAREVFARMVESG 340

Query: 318 SDDDE-DENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLV 376
              D    N   +S  R     Q +  L+    A     + PE  +  +   ++ T   V
Sbjct: 341 CKPDLISYNILIDSYARFGDAAQARQMLEEMVEAG----FIPETKTYNSLIHWLATDGQV 396

Query: 377 CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
            +     +  ETA           G   DV    +++ +L + G  +   RL  +++  G
Sbjct: 397 DEAFAVLEEMETA-----------GCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKG 445

Query: 437 MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRT 489
           +     +  + ID      + D AL  F D + +  P+ K     +Y  L+R 
Sbjct: 446 VEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCPVDK----AMYRILIRA 494



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 11/175 (6%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G T ++     ++    + G +++   L A+++  G +    T  +++D    + +  AA
Sbjct: 165 GLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAA 224

Query: 461 LKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
            K FH      C P S       YS+L+  L K  R  +A  V  EM+  G+  D+  ++
Sbjct: 225 RKLFHKMTGDGCSPDS-----YTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYN 279

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAA 574
            L+   A  G+   V KL   + + G  PDA+ F  ++ A    L  +N  PDAA
Sbjct: 280 SLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDA----LGKAN-KPDAA 329



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 117/292 (40%), Gaps = 10/292 (3%)

Query: 12  LSKAFTQLQTRSFVRAPFTNKLALYLRRAQLI-DSIRLAVRSNSSNSLSSLLNDRLLDPF 70
           L KA    + RSF  A     L   +    L+ D+ R   + + +  L + +  R   P 
Sbjct: 145 LGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPS 204

Query: 71  IVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           +VT+     AL SA    +A  +   +  +   S +  T   L   L KS R  E   + 
Sbjct: 205 VVTYNILLDALCSAGRVGAARKLFHKMTGD-GCSPDSYTYSTLVNGLGKSGRVEEAHKVF 263

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
            ++         VN+ +L+   + +G+++ V     E  ++       S+N +M    K 
Sbjct: 264 REMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKA 323

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
            K   A E F ++++ G  P+  +Y ++I+     G    A ++   +        +K Y
Sbjct: 324 NKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTY 383

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANE 297
             L+       + DEA ++L EM   G  P     V   R+ +M   +G N+
Sbjct: 384 NSLIHWLATDGQVDEAFAVLEEMETAGCRPD---VVTYNRLMDMLGKRGENQ 432



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 94/447 (21%), Positives = 162/447 (36%), Gaps = 83/447 (18%)

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           +++ Y +  K+ +A + F Q       P    +T +I+ LVN G+ + A  V        
Sbjct: 36  LITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELV-------- 87

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANE 297
                  Y  LV+    ++RF                   A  V +      G +  A E
Sbjct: 88  -------YKKLVQKGCQLDRF-------------------AYNVLIRYFGRSGQLDSAME 121

Query: 298 FLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWS 357
             REM    +IK       GS+ DE             YG      ++    A  + E  
Sbjct: 122 MFREM----KIK-------GSEPDE-----------YTYGF----LVNALGKAGRVQEAR 155

Query: 358 PEVVSLLADA--KFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
               ++L       + T  L+    R     + A   F  +  + G+   V     +L  
Sbjct: 156 SFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRR-GFQPSVVTYNILLDA 214

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD--DRTLCGP 473
           L   G V    +L  K+  DG      T   +++  G S + + A K F +  DR +   
Sbjct: 215 LCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVD 274

Query: 474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
           +        Y+SLL TL K         +++EM   G  PD  +F+ +M           
Sbjct: 275 LVN------YNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDA 328

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKK 581
            +++F+ + ++G +PD   + +LI +Y ++            +  +  +P+  T   L  
Sbjct: 329 AREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIH 388

Query: 582 SLWKEGRRKEAAAVEERCEKINDVPSL 608
            L  +G+  EA AV E  E     P +
Sbjct: 389 WLATDGQVDEAFAVLEEMETAGCRPDV 415



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 69/152 (45%), Gaps = 6/152 (3%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL- 470
           ML +LA  G ++ ++ L+ ++ ++G  L  +T+  +I  YG   K+  A   F+   +  
Sbjct: 1   MLVVLASWGILDPLETLLKEMVAEGRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAESFA 60

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
           C P      +  ++ L+  L        A  V ++++  G   D   ++ L+ +F   G 
Sbjct: 61  CSPT-----VHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQ 115

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
                ++F  ++  G EPD Y +  L+ A  K
Sbjct: 116 LDSAMEMFREMKIKGSEPDEYTYGFLVNALGK 147


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 120/600 (20%), Positives = 238/600 (39%), Gaps = 47/600 (7%)

Query: 46  IRLAVRSNSSNSLSSLLNDRLLDPF--------IVTHALRSAPNADSALSIMEALKSNPN 97
           IR+  R    ++  SLL++   + F        +           D A      +K+N  
Sbjct: 103 IRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKAN-G 161

Query: 98  FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVL 157
              +  T  ++  VL K+ R  E   +   +  ++ +  +  +  ++  Y ++G  +   
Sbjct: 162 LVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAY 221

Query: 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217
           S     R +  + S  +YN +++   K GK  +A+  F + +   A+PN  TY ++I  L
Sbjct: 222 SLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEE-MKRDAMPNLPTYNIIIGML 280

Query: 218 VNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR 277
              G +++A +V  A+    +    +   I+++     ++ DEA S+   M      P  
Sbjct: 281 CKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDG 340

Query: 278 AMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYED------GSDDDEDENDDNNS 330
           A   +L + + + G +  A      ML   +I NV  Y          D  ED +     
Sbjct: 341 ATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKE 400

Query: 331 GVRIAYG---VQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTR----LVCKVLRHF 383
            +R       + L  ++D    A   ++       + A   F+  TR    L+  +++  
Sbjct: 401 MMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARG-FLPDTRSYSILIHSLVKAG 459

Query: 384 KSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFST 443
            + ET +  + +     G   D  A   ++    + G V    +L+ ++++ G      T
Sbjct: 460 FARET-YELY-YAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVT 517

Query: 444 IRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVL 503
              ++D      + D A   F + ++    +++    ++YSSL+    K  R  +A  V+
Sbjct: 518 YGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQ----VIYSSLIDGFGKVGRVDEAYLVM 573

Query: 504 EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL--FSMVRQNGVEPDAYMFKVLIQAYC 561
           EEM+  G+ P+V T++ L+    L   E+I + L  F  ++     P+   + +LI   C
Sbjct: 574 EEMMQKGLTPNVYTWNCLLD--GLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLC 631

Query: 562 KY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA 609
           K             +    L P+  T   +   L K G   +A+++ ER      +P  A
Sbjct: 632 KVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGIPDSA 691



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 4/190 (2%)

Query: 86  LSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQ 145
           L +M   K  P FS   + + AL+ V  +S R   L   + ++     +NV +    L++
Sbjct: 49  LQMMRHFKFRPAFSAYTTLIGALSEV-GESDRMLALFNQMQELGYE--VNVHL-LTTLIR 104

Query: 146 WYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP 205
            +S  G ++  LS  +E +          YN+ +  + K GK   A + F ++   G +P
Sbjct: 105 VFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVP 164

Query: 206 NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL 265
           +  TYT M+  L    +LD A+E+F  +   R    +  Y  ++ G+    +FDEA SLL
Sbjct: 165 DDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLL 224

Query: 266 NEMRDDGKFP 275
              R  G  P
Sbjct: 225 ERQRAKGCIP 234



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 130/324 (40%), Gaps = 34/324 (10%)

Query: 150 SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRT 209
           +G+ E   + + E + R  L  T SY+I++    K G   E  E +  + D+G + ++R 
Sbjct: 423 AGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRA 482

Query: 210 YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
           Y  +I+     GK++ A ++   +  M    T   Y  +V+G   ++R DEA  L  E +
Sbjct: 483 YNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAK 542

Query: 270 DDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYE---DGSDDDEDEN 325
            +G    + +  +L +   ++G +  A   + EM+      NV  +    DG    E+ N
Sbjct: 543 SNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEIN 602

Query: 326 DDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKS 385
           +           V  +   D K   N +               +      +CKV +  K+
Sbjct: 603 EAL---------VCFQSMKDLKCTPNQI--------------TYCILINGLCKVRKFNKA 639

Query: 386 PETAWHFFCWVAYQP-GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI 444
                 F  W   Q  G   +      M++ LA+ G+V     L  + R+ G     ++ 
Sbjct: 640 ------FVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGIPDSASY 693

Query: 445 RLIIDFYGISKKADAALKAFHDDR 468
             +I+   I+ +A  A + F + R
Sbjct: 694 NAMIEGLSIANRALDAYQLFEETR 717



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/282 (21%), Positives = 114/282 (40%), Gaps = 15/282 (5%)

Query: 12  LSKAFTQLQT-RSF-VRAPFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDP 69
           L +AF  LQ  R F  R  F+    L    +++ +S R+    N    L   +N  LL  
Sbjct: 42  LIEAFDLLQMMRHFKFRPAFSAYTTLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTT 101

Query: 70  FIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDIS 129
            I           D+ALS+++ +KSN  F  +    +       K  +         ++ 
Sbjct: 102 LI--RVFSREGRVDAALSLLDEMKSN-TFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMK 158

Query: 130 SSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF 189
           ++  +   V + ++M     +  L+  +  + +  Q  ++    +YN ++  Y   GK  
Sbjct: 159 ANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFD 218

Query: 190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS----KQY 245
           EA     +   +G IP+   Y  ++  L   GK D AL +F       +KR +      Y
Sbjct: 219 EAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFE-----EMKRDAMPNLPTY 273

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERM 286
            I++         + A  + + M++ G FP  R + + ++R+
Sbjct: 274 NIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRL 315



 Score = 45.4 bits (106), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 44/219 (20%), Positives = 88/219 (40%), Gaps = 15/219 (6%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           GY  +V+ L  ++ + +R G V+    L+ +++S+          + ID +G   K D A
Sbjct: 91  GYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMA 150

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
            K FH+ +   G +      + Y+S++  L K  R  +A+ + E+M  +  VP    ++ 
Sbjct: 151 WKFFHEMKAN-GLVPD---DVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNT 206

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNS-----------NL 569
           ++  +   G       L    R  G  P    +  ++    K                + 
Sbjct: 207 MIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDA 266

Query: 570 MPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
           MP+  T  ++   L K G  + A  V +  ++    P++
Sbjct: 267 MPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNV 305



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 75/191 (39%), Gaps = 1/191 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A  +ME +      + N  T + L   L K++  +E       +   K     + +  
Sbjct: 567 DEAYLVMEEMMQK-GLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCI 625

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+               W E +++    +T +Y  ++S  AK+G   +A   F +    G
Sbjct: 626 LINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASG 685

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            IP+S +Y  MIE L    +   A ++F    L      +K  + L++     E  ++A 
Sbjct: 686 GIPDSASYNAMIEGLSIANRALDAYQLFEETRLKGCSIHTKTCVALLDALHKAECLEQAA 745

Query: 263 SLLNEMRDDGK 273
            +   +R+  K
Sbjct: 746 IVGAVLRETAK 756


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 110/514 (21%), Positives = 201/514 (39%), Gaps = 48/514 (9%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  TL+ +    +K     E    +  I  +     S  + +L+  Y  + D+      +
Sbjct: 213 NIYTLNTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVF 272

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           N    +    +  SY  ++    + G+  E +  F+++ ++   P  RTYTV+I  L   
Sbjct: 273 NMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGN 332

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR 280
            +    +++F+ +     +     Y ++V+      + DE++ +LNEM + G  P     
Sbjct: 333 DRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTY 392

Query: 281 VALER-MQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQ 339
            AL R   E G I+ A E L  M  +    N R Y +              G      V 
Sbjct: 393 NALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELI-----------CGFSKRKHVH 441

Query: 340 LKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQ 399
               L  K L + L   +P +V+      +     + CK   HF S   A+     +  +
Sbjct: 442 KAMTLLSKMLESKL---TPSLVT------YNSLIHVQCKA-GHFDS---AYKLLDLLK-E 487

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
            G   D +     +  L +   +E    L   L+  G++        +ID +  + K D 
Sbjct: 488 NGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDE 547

Query: 460 A---LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
           A   L+  H +   C P S       Y+SL+  + K  +  + ++++E M   G+ P V 
Sbjct: 548 AISLLERMHSED--CLPNSS-----TYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVA 600

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------L 564
           T++ L+     +GD     ++F+ +   G +PD Y +   I  YC              +
Sbjct: 601 TYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARM 660

Query: 565 SNSNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
             + +MPD+ T  LL  +  + G   +A  V +R
Sbjct: 661 IEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKR 694



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 99/252 (39%), Gaps = 8/252 (3%)

Query: 58  LSSLLNDRLLDPFIVT-----HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVL 112
           LS +L  +L  P +VT     H    A + DSA  +++ LK N     +Q T       L
Sbjct: 447 LSKMLESKL-TPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKEN-GLVPDQWTYSVFIDTL 504

Query: 113 AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
            KS+R  E   L   +         V +  L+  +  +G ++  +S          L ++
Sbjct: 505 CKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNS 564

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            +YN ++    K GK  E +     +   G  P   TYT++IE ++  G  D A  VF+ 
Sbjct: 565 STYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQ 624

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGF 291
           +     K     Y   +  +       EA+ ++  M + G  P      + +   + +G 
Sbjct: 625 MVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGL 684

Query: 292 IQGANEFLREML 303
              A   L+ ML
Sbjct: 685 AYDAFNVLKRML 696



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 2/222 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           ++AL I+  ++SN N   N+ T + L    +K +  H+  TL+  +  SK     V + +
Sbjct: 406 EAALEILGLMESN-NCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNS 464

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+     +G  +      +  ++   +    +Y++ +    K+ +  EA + F  + ++G
Sbjct: 465 LIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKG 524

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
              N   YT +I+     GK+D A+ +   +        S  Y  L+ G     +  E  
Sbjct: 525 IKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGL 584

Query: 263 SLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREML 303
           S++  M   G  P  A   + +E M   G    AN    +M+
Sbjct: 585 SMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMV 626



 Score = 46.6 bits (109), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 96/216 (44%), Gaps = 19/216 (8%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           +V+    M+  + +   ++   R++ ++   G+     T   +I  Y    + +AAL+  
Sbjct: 353 NVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEIL 412

Query: 465 H-DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
              +   C P  +      Y+ L+   +K K    A+ +L +M+ S + P + T++ L++
Sbjct: 413 GLMESNNCRPNER-----TYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIH 467

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSL 583
                G      KL  ++++NG+ PD + + V I   CK    S  M +A     L  SL
Sbjct: 468 VQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCK----SKRMEEACD---LFNSL 520

Query: 584 WKEGRRKE----AAAVEERCE--KINDVPSLALRGH 613
            ++G +       A ++  C+  KI++  SL  R H
Sbjct: 521 KEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMH 556



 Score = 46.2 bits (108), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 43/217 (19%), Positives = 99/217 (45%), Gaps = 20/217 (9%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           ++Y L  M+   ++ G++   +  ++K+   G+     T   +I  Y  +   ++A K F
Sbjct: 213 NIYTLNTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVF 272

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
           +    +       +  + Y++++  L +  R  + I++ ++M      P V+T++ +++ 
Sbjct: 273 N----MMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIH- 327

Query: 525 FALQGDEKIVQ--KLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLM 570
            AL G+++ ++   LF+ +R+   EP+ + + V++ A CK             +    L+
Sbjct: 328 -ALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLV 386

Query: 571 PDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
           P   T   L +   +EGR + A  +    E  N  P+
Sbjct: 387 PSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPN 423



 Score = 42.7 bits (99), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 99/238 (41%), Gaps = 30/238 (12%)

Query: 385 SPETAWHFFCWVAY-QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFST 443
           +P  A  FF  +   +PG+ H V +   +L IL           +   L   G ++  S 
Sbjct: 98  NPNIALQFFNSLPLIKPGFKHTVKSHSFLLKIL-----------IPNNLFGVGEKIRISM 146

Query: 444 IRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLL-YSSLLRTLTKCKRDFDAINV 502
           I+  +    I    D   +   DD  +     KFKL +  Y+ LL  L +     +   V
Sbjct: 147 IKACVSVDDIRFLLDFLRQMNRDDNDI-----KFKLSVRSYNELLMMLARFLMIDEMKRV 201

Query: 503 LEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
             EM+   IVP++ T + ++  ++  G+        S + Q G+ PD++ +  LI  YC+
Sbjct: 202 YTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCR 261

Query: 563 YLS-NS-----NLMPDAATKE------LLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
               NS     N+MP+   +        +   L + GR  E  ++ ++  + +  P++
Sbjct: 262 NNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTV 319


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 111/548 (20%), Positives = 211/548 (38%), Gaps = 55/548 (10%)

Query: 78  SAPNADSALSIMEALKSNPNFSHNQST--LHALATVLAKSQRNHELKTLIGDISSSKFLN 135
           S  N   AL I   +KS   F  N ST   + +  +L K    H    + G +   +   
Sbjct: 229 STNNVSGALEIFNQMKS---FGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQP 285

Query: 136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF 195
            +  F   +  ++ SG L+       E  +        ++ +++    K+G   EA + F
Sbjct: 286 DAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFF 345

Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
             + +    PN  TYT ++  L   G+L+ A EVF  +        +  Y  L++G    
Sbjct: 346 NGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKA 405

Query: 256 ERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
              D A  L  EM+D G  P  R   + +  + + G    A +   ++     + +V  Y
Sbjct: 406 GEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTY 465

Query: 315 EDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPE-VVSLLADAKFVWTT 373
               D              +  G Q+   L   A+   + E   E ++S  ++A    T 
Sbjct: 466 NTLID-------------VLGKGGQMDKVL---AIIKEMVEKGGECIISRDSNAGHEGTI 509

Query: 374 RLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
                  R  + P   +     + Y             +++    +GHV+   +L+  ++
Sbjct: 510 E---GADRTVEYPSLGFKSLGEITYN-----------TLMSAFIHNGHVDEAVKLLEVMK 555

Query: 434 SDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTK 492
                    T   ++D  G + + D A+    + ++  C P      ++ YSSL+ +  K
Sbjct: 556 KHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPS-----VVTYSSLMASFYK 610

Query: 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYM 552
             ++ +++++ +EM+  G V DV T+S ++       D      +F  +++ G+EP    
Sbjct: 611 RDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGN 670

Query: 553 FKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCE 600
           +K L+ +  K             L  S+L+PD     ++   L K  R  EA  + +  +
Sbjct: 671 YKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMK 730

Query: 601 KINDVPSL 608
             N +P L
Sbjct: 731 NQNILPDL 738



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 107/254 (42%), Gaps = 18/254 (7%)

Query: 355 EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT 414
           +W  E+   L   KF     LVC V+ + K    A  FF W   Q GY+H V     M+ 
Sbjct: 131 KWDAEMGKQLERLKFKLNPGLVCDVVVNQKDLHLAKCFFTWAGQQDGYSHTVGTYTLMIK 190

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGP 473
            LA     + V +++  +  +G R+    +  ++  +G +     AL+ F+  ++  C P
Sbjct: 191 RLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSGALEIFNQMKSFGCNP 250

Query: 474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
            +      +Y+ +L  L K      A+ V  ++    I PD QTF   ++ F   G    
Sbjct: 251 STN-----MYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLDP 305

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAY---------CKY---LSNSNLMPDAATKELLKK 581
             +    + ++G++P  + F VLI A          CK+   + N    P+  T   L  
Sbjct: 306 AAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVN 365

Query: 582 SLWKEGRRKEAAAV 595
            L K GR +EA  V
Sbjct: 366 GLAKAGRLEEACEV 379



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 112/557 (20%), Positives = 226/557 (40%), Gaps = 57/557 (10%)

Query: 57   SLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQ 116
            SL  +  + L+  FI         + D A+ ++E +K +        T   L   L K+ 
Sbjct: 525  SLGEITYNTLMSAFI------HNGHVDEAVKLLEVMKKHECIP-TVVTYTTLVDGLGKAG 577

Query: 117  RNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYN 176
            R  E  +L+ ++         V + +LM  +      E  LS ++E  ++  +    +Y+
Sbjct: 578  RLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYS 637

Query: 177  IVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM 236
            +V++   K+    +A++ F ++ +EG  P    Y  ++  LV   K+D AL++F+ L   
Sbjct: 638  LVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQES 697

Query: 237  RIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA-LERMQEMGFIQGA 295
             +   +  Y I+V G V   R DEA  L++ M++    P      + L+ + + G ++ A
Sbjct: 698  SLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEA 757

Query: 296  NEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDE 355
                 +M  +    +V  Y           D    G ++++ + +   +  K     +  
Sbjct: 758  FNMFTKMTEEGHEPDVVAY-------TSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVT 810

Query: 356  WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
            +S  + SL  + +                  E A++FF   +   G T +V     ++  
Sbjct: 811  YSSLIDSLGKEGRV-----------------EEAYYFF-ENSISKGCTPNVGVYSSLIDS 852

Query: 416  LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPI 474
              + G V+    L  +++         T   ++     + + + A K   + ++  C P 
Sbjct: 853  FGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPD 912

Query: 475  SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
                 ++ Y+ L+  + K     +A +  + M   GIVPDV TF+ L+   +L   +K++
Sbjct: 913  -----LVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIE--SLGKVDKLL 965

Query: 535  Q--KLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLK 580
            +  +LF  + + G  P    + VLI    +             +     MPD  T  ++K
Sbjct: 966  EACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPDGITIGIMK 1025

Query: 581  KSLWKEGRRKEAAAVEE 597
            + L    R ++  A+EE
Sbjct: 1026 RILSV--REQQFHALEE 1040



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 77/163 (47%), Gaps = 1/163 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           ++  AL  + N D A      +K N   S N  T   L   LAK+ R  E   +  ++  
Sbjct: 327 VLIDALVKSGNIDEACKFFNGMK-NLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKE 385

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           +     ++ +  L+     +G+ ++    + E + R  + +  +YNI++SV  K G+  E
Sbjct: 386 NNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPE 445

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           A + F  + ++GA+P+  TY  +I+ L   G++D  L +   +
Sbjct: 446 AWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEM 488



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 98/498 (19%), Positives = 201/498 (40%), Gaps = 70/498 (14%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + +  LM  +  +G ++  +      ++   + +  +Y  ++    K G+  EAV   R+
Sbjct: 529 ITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLRE 588

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +  +G  P+  TY+ ++       + + +L +F  +           Y +++      + 
Sbjct: 589 MEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDD 648

Query: 258 FDEAKSLLNEMRDDGKFP----GRAMRVALERMQEMGF-IQGANEFLRE-MLPDKRIKNV 311
            D+A  +   M+++G  P     + +  +L + +++ F +Q  NE     ++PD  + N+
Sbjct: 649 VDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNI 708

Query: 312 RYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSL-----LAD 366
                                           ++    +N +DE    V S+     L D
Sbjct: 709 -------------------------------MVNGLVKSNRVDEACKLVDSMKNQNILPD 737

Query: 367 AKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHG---HVE 423
             F +T+ L    L      E A++ F  +  + G+  DV A   ++ +L + G   H  
Sbjct: 738 L-FTYTSLL--DGLGKSGRLEEAFNMFTKMT-EEGHEPDVVAYTSLMDVLGKGGKLSHAL 793

Query: 424 LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFKLMLL 482
           ++ R +AK R     + +S++   ID  G   + + A   F +  +  C P      + +
Sbjct: 794 IIFRAMAKKRCVPDVVTYSSL---IDSLGKEGRVEEAYYFFENSISKGCTPN-----VGV 845

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YSSL+ +  K      A+ + EEM      P++ T++ L+   A  G   + +KL   + 
Sbjct: 846 YSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEME 905

Query: 543 QNGVEPDAYMFKVLI------------QAYCKYLSNSNLMPDAATKELLKKSLWKEGRRK 590
           + G  PD   + +LI            ++Y K +    ++PD  T   L +SL K  +  
Sbjct: 906 KVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLL 965

Query: 591 EAAAVEERCEKINDVPSL 608
           EA  + +  E+    PS+
Sbjct: 966 EACELFDSMEEEGYNPSV 983


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 100/465 (21%), Positives = 180/465 (38%), Gaps = 111/465 (23%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAI-PNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           +YN +++ Y   G+    ++  R+++ E  + P++ TY  +I  L   G+  +AL V   
Sbjct: 2   AYNAMVAGYCGAGQ----LDAARRLVAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDE 57

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGF 291
           +   R       Y IL+E       + +A  LL+EMRD G  P      V +  + + G 
Sbjct: 58  MLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGR 117

Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKP------WLD 345
           +  A EFL         KN+  Y  G + +            ++Y + LK       W D
Sbjct: 118 VDDAIEFL---------KNLPSY--GCEPN-----------TVSYNIVLKGLCTAERWED 155

Query: 346 PKALANTLDE--WSPEVVSLLADAKFVWTTRLVCKVL-------RHFKSPETA-----WH 391
            + L   + +    P VV+      F+    LV   L       ++  +P +       H
Sbjct: 156 AEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLH 215

Query: 392 FFCW------------VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
            FC             +    G   D+ +   +LT L R G V++   L+ +L+  G   
Sbjct: 216 AFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKG--- 272

Query: 440 PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDA 499
                                          C P+     ++ Y++++  LTK  +  +A
Sbjct: 273 -------------------------------CAPV-----LISYNTVIDGLTKAGKTKEA 296

Query: 500 INVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
           + +L EM+  G+ PD+ T+S +      +   +   + F  V+  G+ P+  ++  +I  
Sbjct: 297 LELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILG 356

Query: 560 YCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
            CK            Y+  +  MP+ +T  +L + L  EG  KEA
Sbjct: 357 LCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEA 401



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 65/136 (47%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  L++     G     L+  +E  +R  +    +Y I++    K     +A++   ++ 
Sbjct: 35  YNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMR 94

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           D+G  P+  TY V++  +   G++D A+E    LP    +  +  Y I+++G    ER++
Sbjct: 95  DKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWE 154

Query: 260 EAKSLLNEMRDDGKFP 275
           +A+ L+ EM   G  P
Sbjct: 155 DAEELMGEMGQKGCPP 170



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/224 (20%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 83  DSALSIMEALK---SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
           + AL ++E +      PN       LHA      K ++  +    +  + S       V+
Sbjct: 189 EPALEVLEQIPKYGCTPNSLSYNPLLHAFC----KQKKMDKAMAFLDLMVSRGCYPDIVS 244

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  L+     SG++++ +   ++ + +       SYN V+    K GK  EA+E   +++
Sbjct: 245 YNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMV 304

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
            +G  P+  TY+ +   L    +++ A+  F  +  M I+  +  Y  ++ G        
Sbjct: 305 SKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETH 364

Query: 260 EAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
            A  L   M  +G  P  +   + +E +   G I+ A + L E+
Sbjct: 365 SAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDEL 408



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 50/105 (47%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           +T SYNIV+       +  +A E   ++  +G  PN  T+ ++I  L   G ++ ALEV 
Sbjct: 136 NTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVL 195

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             +P       S  Y  L+  F   ++ D+A + L+ M   G +P
Sbjct: 196 EQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYP 240


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 118/559 (21%), Positives = 225/559 (40%), Gaps = 60/559 (10%)

Query: 51  RSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALAT 110
           RS S +  +++L D L+D +  T ++R   NA   + +M  L   P     +   + L  
Sbjct: 165 RSRSPSPSTAVL-DVLVDTYKKTGSVR---NAAQVVLMMADLGLAPT----RRCCNGLLK 216

Query: 111 VLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLL 170
            L ++     L  L G +  +  L     +   ++ +  + D +     + E R+R   +
Sbjct: 217 DLLRADAMELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAM 276

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           +  +YN+++S   ++G   EA     +++D G  P++ TY  ++  L    +L  A  + 
Sbjct: 277 NEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALL 336

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER-MQEM 289
             +    +K     Y  LV+GF+   +  EA  +L EM   G  P + M   L R + ++
Sbjct: 337 DEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKI 396

Query: 290 GFIQGANEFLREML-----PDKRIKNVRYYEDGSDDDEDE-----NDDNNSGVR---IAY 336
           G +  A++ L+EM+     PD    N          D+D      N+  NSG+     +Y
Sbjct: 397 GQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSY 456

Query: 337 GVQLKPWL---DPKALANTLDEWSPE--------VVSLLADAKFVWTTRLVCKVLRHFKS 385
           G+ +       + K   N L+E   E           L+          L C+ L     
Sbjct: 457 GIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTK 516

Query: 386 PETAWHFFCWVAY---------------------QPGYTHDVYALEKMLTILARHGHVEL 424
                  FC+ +                      + G   D +    ++    + G++E 
Sbjct: 517 ANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEK 576

Query: 425 VDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS 484
            D+L+ ++ + G++    T   +++ Y  S   +         +++ G   K     +Y 
Sbjct: 577 ADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSIL---QSMLGSGDKPD-NHIYG 632

Query: 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD-EKIVQKLFSMVRQ 543
            ++R L++ +    A  VL E+  +G+VPD+  +S L+       D EK V  L  M ++
Sbjct: 633 IVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKE 692

Query: 544 NGVEPDAYMFKVLIQAYCK 562
            G+EP    +  LI  +C+
Sbjct: 693 -GLEPGIVCYNALIDGFCR 710



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 102/254 (40%), Gaps = 21/254 (8%)

Query: 80  PNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
           PNAD+   ++E    + ++    S L ++     K   NH    +I ++S S+  N+ V 
Sbjct: 591 PNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPD-NHIYGIVIRNLSRSE--NMEVA 647

Query: 140 FMNL-----------MQWYST--SG-----DLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
           FM L           +  YS+  SG     D+E  +   +E  +         YN ++  
Sbjct: 648 FMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDG 707

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
           + ++G    A   F  ++ +G +PN  TYT +I+     G +  A +++  +    I   
Sbjct: 708 FCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPD 767

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLRE 301
           +  Y +L  G       ++A  L  EM + G          +    + G +Q   + L  
Sbjct: 768 AFVYNVLATGCSDAADLEQALFLTEEMFNRGYANVSLFNTLVHGFCKRGKLQETEKLLHV 827

Query: 302 MLPDKRIKNVRYYE 315
           M+  + + N +  E
Sbjct: 828 MMDREIVPNAQTVE 841



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 12/120 (10%)

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A  +L EM  SGI+P+V ++  ++      G+ K    L   +   G++P+A+M+  LI 
Sbjct: 437 AFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLII 496

Query: 559 AYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
            + K             ++ +N+ PD      L K L   GR +EA     + +K   VP
Sbjct: 497 GHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVP 556


>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
 gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
 gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 108/513 (21%), Positives = 212/513 (41%), Gaps = 37/513 (7%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           ++T   R + + ++A  + E +K+   FS+++ T +AL  V  KS R  E   ++ ++  
Sbjct: 285 LITCCKRGSLHQEAA-QVFEEMKA-AGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVL 342

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           + F    V + +L+  Y+  G L+  +   N+  ++       +Y  ++S + + GK   
Sbjct: 343 NGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVES 402

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR--TSKQYLIL 248
           A+  F ++ + G  PN  T+   I+   N GK    +++F  + +  +     +   L+ 
Sbjct: 403 AMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLA 462

Query: 249 VEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREML---- 303
           V G  G++   E   +  EM+  G  P R      +      G  + A    R ML    
Sbjct: 463 VFGQNGMD--SEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGV 520

Query: 304 -PDKRIKNV--------RYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLD 354
            PD    N           +E       +  D       + Y   L  + + K +   + 
Sbjct: 521 TPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIG-LMH 579

Query: 355 EWSPEVVSLLADAKFVW--TTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
             + EV S + + + V   T  LVC         E A+        + G++ D+  L  M
Sbjct: 580 SLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSEL----KERGFSPDITTLNSM 635

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
           ++I  R   V   + ++  ++  G     +T   ++  Y  S+ AD   K+    R +  
Sbjct: 636 VSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLM--YMHSRSADFG-KSEEILREILA 692

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
              K  + + Y++++    +  R  DA  +  EM  SGIVPDV T++  +  +A    + 
Sbjct: 693 KGIKPDI-ISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAA---DS 748

Query: 533 IVQKLFSMVR---QNGVEPDAYMFKVLIQAYCK 562
           + ++   +VR   ++G  P+   +  ++  YCK
Sbjct: 749 MFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCK 781



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 102/542 (18%), Positives = 209/542 (38%), Gaps = 54/542 (9%)

Query: 87  SIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQW 146
           S++E +KS+   + +  T + L T   +   + E   +  ++ ++ F    V +  L+  
Sbjct: 265 SLVEKMKSD-GIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDV 323

Query: 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206
           Y  S   +  +   NE        S  +YN ++S YA+ G   EA+E   Q+ ++G  P+
Sbjct: 324 YGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPD 383

Query: 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
             TYT ++      GK++SA+ +F  +     K     +   ++ +    +F E   + +
Sbjct: 384 VFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFD 443

Query: 267 EMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM-----LPDKRIKNV---RYYEDG 317
           E+   G  P        L    + G     +   +EM     +P++   N     Y   G
Sbjct: 444 EINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCG 503

Query: 318 SDDDEDENDDNNSGVRIAYGVQLKPWLDP---------KALA-NTLDEWSPEVVSLLADA 367
           S +               Y   L   + P          ALA   + E S +V++ + D 
Sbjct: 504 SFEQ----------AMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDG 553

Query: 368 KFVWTTRLVCKVLRHFKSPETA--WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELV 425
           +        C +L  + + +     H      Y          L+ ++ + ++   +   
Sbjct: 554 RCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEA 613

Query: 426 DRLIAKLRSDGMRLPFSTIRLIIDFYG---ISKKADAALKAFHDDRTLCGPISKFKLMLL 482
           +R  ++L+  G     +T+  ++  YG   +  KA+  L  +  +R           M  
Sbjct: 614 ERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLD-YMKERGFT------PSMAT 666

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+SL+   ++      +  +L E++  GI PD+ +++ ++Y +      +   ++FS +R
Sbjct: 667 YNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMR 726

Query: 543 QNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRK 590
            +G+ PD   +   I +Y             +Y+      P+  T   +     K  R+ 
Sbjct: 727 NSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKD 786

Query: 591 EA 592
           EA
Sbjct: 787 EA 788



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 89/209 (42%), Gaps = 7/209 (3%)

Query: 80  PNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
           P A+ A S ++       FS + +TL+++ ++  + Q   +   ++  +    F      
Sbjct: 611 PEAERAFSELKER----GFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMAT 666

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           + +LM  +S S D         E   +       SYN V+  Y +  +  +A   F ++ 
Sbjct: 667 YNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMR 726

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           + G +P+  TY   I         + A+ V   +     +     Y  +V+G+  + R D
Sbjct: 727 NSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKD 786

Query: 260 EAKSLLNEMRD-DGKFP-GRAMRVALERM 286
           EAK  + ++R+ D   P G  +R+ LER+
Sbjct: 787 EAKLFVEDLRNLDPHAPKGEDLRL-LERI 814



 Score = 42.4 bits (98), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 46/228 (20%), Positives = 86/228 (37%), Gaps = 29/228 (12%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS----KK 456
           G++ DVY+   +++  A  G       +  K+  DG +    T  +I++ +G       K
Sbjct: 203 GFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNK 262

Query: 457 ADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDF---DAINVLEEMIFSGIVP 513
             + ++    D       +       Y++L+   T CKR     +A  V EEM  +G   
Sbjct: 263 ITSLVEKMKSDGIAPDAYT-------YNTLI---TCCKRGSLHQEAAQVFEEMKAAGFSY 312

Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK----------- 562
           D  T++ L+  +      K   K+ + +  NG  P    +  LI AY +           
Sbjct: 313 DKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELK 372

Query: 563 -YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA 609
             ++     PD  T   L     + G+ + A ++ E        P++ 
Sbjct: 373 NQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNIC 420


>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1080

 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 117/554 (21%), Positives = 224/554 (40%), Gaps = 87/554 (15%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           V HALRSA     AL    +    P  +H  ++ + +  ++    R  ++  +  D+   
Sbjct: 60  VIHALRSADGPAEALERFRSAARKPRVAHTTASCNYMLELMRGHGRVGDMAEVF-DVMQR 118

Query: 132 KFLNVSVN-FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           + +  +V  F  +       G L          ++   +L+  +YN ++    K+G + E
Sbjct: 119 QIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDRE 178

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK---LDSALEVFSALPLMRIKRTSKQYLI 247
           A+E +R ++ +G +P+ RTY+V+   +V  GK   +++ L +   +    +K     Y I
Sbjct: 179 ALEVYRVMMVDGVVPSVRTYSVL---MVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTI 235

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR-VALERMQEMGFIQGANEFLREM-LPD 305
            +      +RFDEA  +L +M ++G  P      V ++ + + G I  A +   +M   D
Sbjct: 236 CIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSD 295

Query: 306 KRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLA 365
           ++   V Y      D   +N D+ S + I        W   KA     D ++  VV+   
Sbjct: 296 QKPDRVTYIT--LLDKFGDNGDSQSVMEI--------WNAMKA-----DGYNDNVVA--- 337

Query: 366 DAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELV 425
              +      +C+V R F++ E           Q G   + Y+   +++   +       
Sbjct: 338 ---YTAVIDALCQVGRVFEALEMFDEM-----KQKGIVPEQYSYNSLISGFLKADRFGDA 389

Query: 426 DRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSS 485
             L   +   G +    T  L I++YG   K+  ++KA          I +++LM     
Sbjct: 390 LELFKHMDIHGPKPNGYTHVLFINYYG---KSGESIKA----------IQRYELM----- 431

Query: 486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
                 K K               GIVPDV   + +++  A  G   + +++F  ++  G
Sbjct: 432 ------KSK---------------GIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMG 470

Query: 546 VEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
           V PD   + ++I+   K             +  +N +PD      L  +L+K GR  EA 
Sbjct: 471 VSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAW 530

Query: 594 AVEERCEKINDVPS 607
            +  + +++N  P+
Sbjct: 531 RIFYQLKEMNLEPT 544



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 84/172 (48%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T + + + L KS+R  +   L  ++ S  F      +  L+     +G +E   + +NE 
Sbjct: 827 TYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEM 886

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
            +     +   YNI+++ +   G   +    F+ ++D+G  P+ ++YT++I+ L   G+L
Sbjct: 887 LEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQL 946

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +  L  F  L  M ++     Y +L++G    +R +EA SL NEM+  G  P
Sbjct: 947 NDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVP 998



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 94/481 (19%), Positives = 176/481 (36%), Gaps = 73/481 (15%)

Query: 174  SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
            +YN +++   + GK  E +    ++      PN  TY  +++ L   G ++ AL++  ++
Sbjct: 547  TYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSM 606

Query: 234  PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA-MRVALERMQEMGFI 292
                       Y  ++ G V  ER++EA S+  +M+     P  A +   L    ++G +
Sbjct: 607  TTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKV-LIPDYATLCTILPSFVKIGLM 665

Query: 293  QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
            + A   +++           + + GS  D         G+    G+              
Sbjct: 666  KEALHIIKDY----------FLQPGSKTDRSSCHSLMEGILKKAGI-------------- 701

Query: 353  LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW--HFFCWVAYQPGYTHDVYALE 410
              E S E   ++A +        +C +++H    + A   H         G +       
Sbjct: 702  --EKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYN 759

Query: 411  KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD---- 466
             ++  L     +++ + L A+++  G      T  L++D  G S + +  LK   +    
Sbjct: 760  SLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRK 819

Query: 467  ---------DRTLCGPISK----------FKLM--------LLYSSLLRTLTKCKRDFDA 499
                     +  + G +            + LM          Y  LL  L K  R  DA
Sbjct: 820  GYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDA 879

Query: 500  INVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
             N+  EM+  G   +   ++ L+    + G+ + V  LF  +   G+ PD   + ++I  
Sbjct: 880  ENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDT 939

Query: 560  YCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
             CK             L    L PD  T  LL   L K  R +EA ++    +K   VP+
Sbjct: 940  LCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPN 999

Query: 608  L 608
            L
Sbjct: 1000 L 1000



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 83/200 (41%), Gaps = 8/200 (4%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I    L  A   D A  I+  ++ N     +  T   L  VL  + R  + K +   +  
Sbjct: 235 ICIRVLGQAKRFDEAYRILAKME-NEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKK 293

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           S      V ++ L+  +  +GD + V+  WN  +      +  +Y  V+    + G+ FE
Sbjct: 294 SDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFE 353

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV- 249
           A+E F ++  +G +P   +Y  +I   +   +   ALE+F  + +   K     +++ + 
Sbjct: 354 ALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFIN 413

Query: 250 ------EGFVGVERFDEAKS 263
                 E    ++R++  KS
Sbjct: 414 YYGKSGESIKAIQRYELMKS 433



 Score = 40.0 bits (92), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 45/102 (44%)

Query: 174  SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
            +YN+++    K+ +  EAV  F ++  +G +PN  TY  +I HL   GK   A +++  L
Sbjct: 967  TYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEEL 1026

Query: 234  PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                 K     Y  L+ G+      D A +    M   G  P
Sbjct: 1027 LTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLP 1068



 Score = 40.0 bits (92), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 49/106 (46%)

Query: 143  LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
            L+     S  LE  +S +NE +++  + +  +YN ++    K GK  EA + + +++ +G
Sbjct: 971  LIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKG 1030

Query: 203  AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
              PN  TY  +I      G  DSA   +  + +      S  Y+ L
Sbjct: 1031 WKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTYMQL 1076


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 96/442 (21%), Positives = 176/442 (39%), Gaps = 56/442 (12%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SY  V++ + K G   +A  T+ +++D G +PN  TY+ +I  L     +D A+EV +++
Sbjct: 201 SYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSM 260

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
               +    + Y  +V G+    +  EA   L +M  DG  P                + 
Sbjct: 261 VKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD---------------VV 305

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVR---IAYGVQLKPWLDPKALA 350
             N  +  +  + R    R   D              G++     YG  L+ +    AL 
Sbjct: 306 TYNSLMDYLCKNGRCTEARKMFDSM---------TKRGLKPEITTYGTLLQGYATKGALV 356

Query: 351 NTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
                    V + +    +V++  L+C   +  K  +    F      Q G   D     
Sbjct: 357 EMHGLLDLMVRNGIHPNHYVFSI-LICAYAKQGKVDQAMLVF--SKMRQQGLNPDTVTYG 413

Query: 411 KMLTILARHGHVE----LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD 466
            ++ IL + G VE      +++I +  S G  +  S I  +  F    K  +  L+    
Sbjct: 414 TVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML-- 471

Query: 467 DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
           DR +C         + ++S++ +  K  R  ++  + + M+  G+ PD+ T+S L+  + 
Sbjct: 472 DRGICLDT------IFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYC 525

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAA 574
           L G      KL + +   G++PD   +  LI  YCK             + +S + PD  
Sbjct: 526 LAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDII 585

Query: 575 TKELLKKSLWKEGRRKEAAAVE 596
           T  ++ + L++   R+ AAA E
Sbjct: 586 TYNIILQGLFQT--RRTAAAKE 605



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 110/524 (20%), Positives = 206/524 (39%), Gaps = 47/524 (8%)

Query: 64  DRLLDPFIVTH-----ALRSAPNADSALSIMEALKSN---PNFSHNQSTLHALATVLAKS 115
           DR + P +VT+     AL  A   D A+ ++ ++  N   PN     S +H   +    S
Sbjct: 227 DRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCS----S 282

Query: 116 QRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
            +  E    +  + S       V + +LM +   +G        ++   +R       +Y
Sbjct: 283 GQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTY 342

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
             ++  YA  G   E       ++  G  PN   ++++I      GK+D A+ VFS +  
Sbjct: 343 GTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQ 402

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFI--- 292
             +   +  Y  ++       R ++A     +M D+   PG  +  +L  +  +      
Sbjct: 403 QGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSL--IHSLCIFDKW 460

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSG------VRIAYG---VQLKPW 343
             A E + EML      +  ++    D    E     S       VRI      +     
Sbjct: 461 DKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTL 520

Query: 344 LDPKALANTLDEWS---PEVVSLLADAKFVWTTRLV---CKVLRHFKSPETAWHFFCWVA 397
           +D   LA  +DE +     +VS+      V    L+   CK+ R     E A   F  + 
Sbjct: 521 IDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRM----EDALVLFREME 576

Query: 398 YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK- 456
              G + D+     +L  L +         L   +   G +L  ST  +I+  +G+ K  
Sbjct: 577 -SSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIIL--HGLCKNN 633

Query: 457 -ADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
             D AL+ F +   LC  ++  +L    ++ ++  L K  R+ +A ++   +  +G+VPD
Sbjct: 634 LTDEALRMFQN---LC--LTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPD 688

Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           V+T+S +  +   QG  + +  LF  + +NG   ++ M   +++
Sbjct: 689 VRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVR 732



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 109/559 (19%), Positives = 212/559 (37%), Gaps = 69/559 (12%)

Query: 77  RSAPNADSALSIMEALKSNPN-FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLN 135
           R++   D  L  M  L   PN FS+N   L  L     +SQ   EL  ++ D       +
Sbjct: 141 RTSDAMDIVLRRMTQLGCIPNVFSYN-ILLKGLCDE-NRSQEALELLQMMPDDGGDCPPD 198

Query: 136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF 195
           V V++  ++  +   GDL+    T++E   R  L +  +Y+ +++   K     +A+E  
Sbjct: 199 V-VSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVL 257

Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
             ++  G +PN RTY  ++    + G+   A+     +    ++     Y  L++     
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 256 ERFDEAKSLLNEMRDDGKFP----------GRAMRVALERMQEMGFIQGANEFLREMLPD 305
            R  EA+ + + M   G  P          G A + AL  M  +  +   N     + P+
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN----GIHPN 373

Query: 306 KRIKNV---RYYEDGSDD----------DEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
             + ++    Y + G  D           +  N D      + YG  +        + + 
Sbjct: 374 HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDT-----VTYGTVIGILCKSGRVEDA 428

Query: 353 LDEWSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
           +  +   +   L+    V+ + +  +C   +  K+ E             G   D     
Sbjct: 429 MRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML-----DRGICLDTIFFN 483

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470
            ++    + G V   ++L   +   G++    T   +ID Y ++ K D A K      + 
Sbjct: 484 SIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVS- 542

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG- 529
              +      + Y++L+    K  R  DA+ +  EM  SG+ PD+ T     Y+  LQG 
Sbjct: 543 ---VGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIIT-----YNIILQGL 594

Query: 530 ----DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDA 573
                    ++L+  + ++G + +   + +++   CK             L  ++L  + 
Sbjct: 595 FQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLET 654

Query: 574 ATKELLKKSLWKEGRRKEA 592
            T  ++  +L K GR  EA
Sbjct: 655 RTFNIMIGALLKVGRNDEA 673


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 108/548 (19%), Positives = 218/548 (39%), Gaps = 76/548 (13%)

Query: 75  ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFL 134
           +LRS P+  +AL +       PNFS   +    +   L +S    ++K ++ D+ SS+  
Sbjct: 56  SLRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCE 115

Query: 135 NVSVNFMNLMQWYSTSGDLELVLST--W-----------NEYRQRAKLL----------- 170
             +  F+ L++ Y+     + +LS   W           + Y +   LL           
Sbjct: 116 MGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEI 175

Query: 171 ------------STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
                          ++N+++    +  +   A+     +   G +P+ +T+T +++  +
Sbjct: 176 SHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYI 235

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD-DGKFPGR 277
             G LD AL +   +       ++    ++V GF    R ++A + + EM + DG FP +
Sbjct: 236 EEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQ 295

Query: 278 -AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGV---- 332
                 +  + + G ++ A E +  ML           ++G D D    +   SG+    
Sbjct: 296 YTFNTLVNGLCKAGHVKHAIEIMDVML-----------QEGYDPDVYTYNSVISGLCKLG 344

Query: 333 RIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL------------VC--- 377
            +   V++   +  +  +     ++  + +L  + +    T L            VC   
Sbjct: 345 EVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFN 404

Query: 378 ---KVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
              + L   ++   A   F  +  + G   D +    ++  L   G ++    ++ ++  
Sbjct: 405 SLIQGLCLTRNHRVAMELFEEMRSK-GCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMEL 463

Query: 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCK 494
            G      T   +ID +  + K   A + F D+  + G +S+  +   Y++L+  L K +
Sbjct: 464 SGCARSVITYNTLIDGFCKANKTREAEEIF-DEMEVHG-VSRNSVT--YNTLIDGLCKSR 519

Query: 495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK 554
           R  DA  ++++MI  G  PD  T++ L+ HF   GD K    +   +  NG EPD   + 
Sbjct: 520 RVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYG 579

Query: 555 VLIQAYCK 562
            LI   CK
Sbjct: 580 TLISGLCK 587



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 44/243 (18%)

Query: 395 WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF---- 450
           W+  + G   D +   +ML +L     ++LV+   AK+   G++   ST  ++I      
Sbjct: 143 WMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRA 202

Query: 451 ---------------YGI---SKKADAALKAFHDDRTLCGPISKFKLMLLYSS------- 485
                          YG+    K     ++ + ++  L G +   + M+ +         
Sbjct: 203 HQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSV 262

Query: 486 --LLRTLTKCKRDFDAINVLEEMIFS-GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
             ++    K  R  DA+N ++EM    G  PD  TF+ L+      G  K   ++  ++ 
Sbjct: 263 NVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVML 322

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
           Q G +PD Y +  +I   CK             +   +  P+  T   L  +L KE + +
Sbjct: 323 QEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVE 382

Query: 591 EAA 593
           EA 
Sbjct: 383 EAT 385



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 52/261 (19%), Positives = 98/261 (37%), Gaps = 45/261 (17%)

Query: 380 LRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
           LR       A   F   + +P ++ +    E++L  L R G  + + +++  ++S    +
Sbjct: 57  LRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEM 116

Query: 440 PFSTIRLIIDFYGISKKADAALKA--FHDDRTLCGPISKFKLMLL--------------- 482
             ST  ++I+ Y   +  D  L    +  D     P + F   +L               
Sbjct: 117 GTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEIS 176

Query: 483 ---------------YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
                          ++ L++ L +  +   AI +LE+M   G+VPD +TF+ +M  +  
Sbjct: 177 HAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIE 236

Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSN-LMPDAA 574
           +GD     ++   + + G         V++  +CK             +SN +   PD  
Sbjct: 237 EGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQY 296

Query: 575 TKELLKKSLWKEGRRKEAAAV 595
           T   L   L K G  K A  +
Sbjct: 297 TFNTLVNGLCKAGHVKHAIEI 317


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 96/442 (21%), Positives = 176/442 (39%), Gaps = 56/442 (12%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SY  V++ + K G   +A  T+ +++D G +PN  TY+ +I  L     +D A+EV +++
Sbjct: 201 SYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSM 260

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
               +    + Y  +V G+    +  EA   L +M  DG  P                + 
Sbjct: 261 VKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD---------------VV 305

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVR---IAYGVQLKPWLDPKALA 350
             N  +  +  + R    R   D              G++     YG  L+ +    AL 
Sbjct: 306 TYNSLMDYLCKNGRCTEARKMFDSM---------TKRGLKPEITTYGTLLQGYATKGALV 356

Query: 351 NTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
                    V + +    +V++  L+C   +  K  +    F      Q G   D     
Sbjct: 357 EMHGLLDLMVRNGIHPNHYVFSI-LICAYAKQGKVDQAMLVF--SKMRQQGLNPDTVTYG 413

Query: 411 KMLTILARHGHVE----LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD 466
            ++ IL + G VE      +++I +  S G  +  S I  +  F    K  +  L+    
Sbjct: 414 TVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML-- 471

Query: 467 DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
           DR +C         + ++S++ +  K  R  ++  + + M+  G+ PD+ T+S L+  + 
Sbjct: 472 DRGICLDT------IFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYC 525

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAA 574
           L G      KL + +   G++PD   +  LI  YCK             + +S + PD  
Sbjct: 526 LAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDII 585

Query: 575 TKELLKKSLWKEGRRKEAAAVE 596
           T  ++ + L++   R+ AAA E
Sbjct: 586 TYNIILQGLFQT--RRTAAAKE 605



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 110/524 (20%), Positives = 206/524 (39%), Gaps = 47/524 (8%)

Query: 64  DRLLDPFIVTH-----ALRSAPNADSALSIMEALKSN---PNFSHNQSTLHALATVLAKS 115
           DR + P +VT+     AL  A   D A+ ++ ++  N   PN     S +H   +    S
Sbjct: 227 DRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCS----S 282

Query: 116 QRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
            +  E    +  + S       V + +LM +   +G        ++   +R       +Y
Sbjct: 283 GQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTY 342

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
             ++  YA  G   E       ++  G  PN   ++++I      GK+D A+ VFS +  
Sbjct: 343 GTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQ 402

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFI--- 292
             +   +  Y  ++       R ++A     +M D+   PG  +  +L  +  +      
Sbjct: 403 QGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSL--IHSLCIFDKW 460

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSG------VRIAYG---VQLKPW 343
             A E + EML      +  ++    D    E     S       VRI      +     
Sbjct: 461 DKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTL 520

Query: 344 LDPKALANTLDEWS---PEVVSLLADAKFVWTTRLV---CKVLRHFKSPETAWHFFCWVA 397
           +D   LA  +DE +     +VS+      V    L+   CK+ R     E A   F  + 
Sbjct: 521 IDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRM----EDALVLFREME 576

Query: 398 YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK- 456
              G + D+     +L  L +         L   +   G +L  ST  +I+  +G+ K  
Sbjct: 577 -SSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIIL--HGLCKNN 633

Query: 457 -ADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
             D AL+ F +   LC  ++  +L    ++ ++  L K  R+ +A ++   +  +G+VPD
Sbjct: 634 LTDEALRMFQN---LC--LTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPD 688

Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           V+T+S +  +   QG  + +  LF  + +NG   ++ M   +++
Sbjct: 689 VRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVR 732



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 109/559 (19%), Positives = 212/559 (37%), Gaps = 69/559 (12%)

Query: 77  RSAPNADSALSIMEALKSNPN-FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLN 135
           R++   D  L  M  L   PN FS+N   L  L     +SQ   EL  ++ D       +
Sbjct: 141 RTSDAMDIVLRRMTQLGCIPNVFSYN-ILLKGLCDD-NRSQEALELLQMMPDDGGDCPPD 198

Query: 136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF 195
           V V++  ++  +   GDL+    T++E   R  L +  +Y+ +++   K     +A+E  
Sbjct: 199 V-VSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVL 257

Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
             ++  G +PN RTY  ++    + G+   A+     +    ++     Y  L++     
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 256 ERFDEAKSLLNEMRDDGKFP----------GRAMRVALERMQEMGFIQGANEFLREMLPD 305
            R  EA+ + + M   G  P          G A + AL  M  +  +   N     + P+
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN----GIHPN 373

Query: 306 KRIKNV---RYYEDGSDD----------DEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
             + ++    Y + G  D           +  N D      + YG  +        + + 
Sbjct: 374 HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDT-----VTYGTVIGILCKSGRVEDA 428

Query: 353 LDEWSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
           +  +   +   L+    V+ + +  +C   +  K+ E             G   D     
Sbjct: 429 MRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML-----DRGICLDTIFFN 483

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470
            ++    + G V   ++L   +   G++    T   +ID Y ++ K D A K      + 
Sbjct: 484 SIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVS- 542

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG- 529
              +      + Y++L+    K  R  DA+ +  EM  SG+ PD+ T     Y+  LQG 
Sbjct: 543 ---VGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIIT-----YNIILQGL 594

Query: 530 ----DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDA 573
                    ++L+  + ++G + +   + +++   CK             L  ++L  + 
Sbjct: 595 FQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLET 654

Query: 574 ATKELLKKSLWKEGRRKEA 592
            T  ++  +L K GR  EA
Sbjct: 655 RTFNIMIGALLKVGRNDEA 673


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 113/529 (21%), Positives = 202/529 (38%), Gaps = 60/529 (11%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L K +R  E + L  ++ +   +   +++ +L+  +  SG  E     +NE         
Sbjct: 131 LCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSD 190

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
             + ++++ +  K GK  EA E    +I  G I +  TY+ +I+ L    ++  A  +F 
Sbjct: 191 VTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEATRLFM 250

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGF 291
           ++  +  +  +  Y  L++G       + A  L  EM +D    G   +  L  +     
Sbjct: 251 SMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTL--ISYSII 308

Query: 292 IQG---------ANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLK- 341
           I G         A E  +EM     + +V  Y                   + +G  L  
Sbjct: 309 IDGLCKDRREDEARELFKEMKAQGIMPDVISY-----------------TTLIHGFCLSG 351

Query: 342 PWLDPKALANTLDEWS--PEVV--SLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVA 397
            W   K L N + +    P+V   S+L D        ++CK     K      +    V 
Sbjct: 352 KWEKAKCLFNEMLDVGIQPDVTTSSVLID--------MLCK-----KGKVIEANKLLEVV 398

Query: 398 YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA 457
            Q G   DV     ++  L     +    +L  K++  G      T   ++     S   
Sbjct: 399 IQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNI 458

Query: 458 DAALKAFHDDRTLCGP--ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
             AL+   +  +   P  I+     + YS ++  L KC R+ +A  + +EM   G++PDV
Sbjct: 459 KIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDV 518

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------Y 563
            +++ L++ F   G  K  + LF+ +   GV+PD   F VLI   CK             
Sbjct: 519 ISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEV 578

Query: 564 LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRG 612
           +     +P+  T   L K L    R  EA  +  + +K+  +P +   G
Sbjct: 579 MIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYG 627



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 94/466 (20%), Positives = 182/466 (39%), Gaps = 46/466 (9%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L K +R  E + L  ++ +   +   +++  L+  +  SG  E     +NE         
Sbjct: 312 LCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPD 371

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
             + ++++ +  K GK  EA +    VI  G IP+  T T +++ L    ++  A ++F 
Sbjct: 372 VTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFL 431

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR-------VALE 284
            +  +           L++G         A  L   M  D    G   +       + ++
Sbjct: 432 KMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIID 491

Query: 285 RMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYG-VQLKPW 343
            + + G    A E  +EM     I +V  Y                   + +G  +   W
Sbjct: 492 GLCKCGREDEARELFKEMKALGVIPDVISY-----------------TSLIHGFCRSGKW 534

Query: 344 LDPKALANTLDEWS--PEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPG 401
            D K L N + +    P+V +      F     ++CK  +  ++ E        V  Q G
Sbjct: 535 KDAKYLFNEMVDIGVQPDVTT------FSVLIDMLCKEGKVIEANE-----LLEVMIQRG 583

Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP----FSTIRLIIDFYGISKKA 457
              +      ++  L  +  +    +L  K++  G  LP    + T+   +   G  K A
Sbjct: 584 CIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGC-LPDVVTYGTLMKGLCQTGNIKTA 642

Query: 458 DAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
               K    D    G  + FK  ++ YS ++  L K  R+ +A  + +EM   G++P+V 
Sbjct: 643 LELHKKMLSDTGQYG--TNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVI 700

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           +++ L++ F   G  +  + LF+ +   GV+ +A  + V+I  +CK
Sbjct: 701 SYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCK 746



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 8/168 (4%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD----LEL- 155
           N  T   L   L  + R  E   L   +     L   V +  LM+    +G+    LEL 
Sbjct: 587 NTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELH 646

Query: 156 --VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
             +LS   +Y    K     SY+I++    K G+  EA E F+++   G IPN  +YT +
Sbjct: 647 KKMLSDTGQYGTNFKP-DVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSL 705

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           I      GKL+ A  +F+ +    ++  +  Y +++ GF    + D+A
Sbjct: 706 IHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA 753



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/263 (20%), Positives = 104/263 (39%), Gaps = 17/263 (6%)

Query: 69  PFIVTHA-----LRSAPNADSALSIMEALKSNP-----NFSHNQSTLHALATVLAKSQRN 118
           P +VT A     L  + N   AL + + + S+      N   N  +   +   L K  R 
Sbjct: 440 PNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGRE 499

Query: 119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV 178
            E + L  ++ +   +   +++ +L+  +  SG  +     +NE           +++++
Sbjct: 500 DEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVL 559

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI 238
           + +  K GK  EA E    +I  G IPN+ TYT +++ L    ++  A ++F  +  +  
Sbjct: 560 IDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGC 619

Query: 239 KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR-------VALERMQEMGF 291
                 Y  L++G         A  L  +M  D    G   +       + ++ + + G 
Sbjct: 620 LPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGR 679

Query: 292 IQGANEFLREMLPDKRIKNVRYY 314
              A E  +EM     I NV  Y
Sbjct: 680 EDEARELFKEMKALGVIPNVISY 702



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 77/176 (43%), Gaps = 6/176 (3%)

Query: 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
           +T   L  +L K  +  E   L+  +     +  +V +  L++    +  +      + +
Sbjct: 554 TTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMK 613

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI-DEGAI-----PNSRTYTVMIEH 216
            ++   L    +Y  +M    +TG    A+E  ++++ D G       P+  +Y+++I+ 
Sbjct: 614 MQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDG 673

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           L   G+ D A E+F  +  + +      Y  L+ GF    + ++AK L NEM D G
Sbjct: 674 LCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQG 729



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 18/144 (12%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           +S L+  L K  +  +A  +LE MI  G +P+  T++ L+    +        +LF  ++
Sbjct: 556 FSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQ 615

Query: 543 QNGVEPDAYMFKVLIQAYC-------------KYLSNS-----NLMPDAATKELLKKSLW 584
           + G  PD   +  L++  C             K LS++     N  PD  +  ++   L 
Sbjct: 616 KLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLC 675

Query: 585 KEGRRKEAAAVEERCEKINDVPSL 608
           K GR  EA  + +  + +  +P++
Sbjct: 676 KHGREDEARELFKEMKALGVIPNV 699



 Score = 40.4 bits (93), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 43/80 (53%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS ++  L K +R+ +A  + +EM   G++PDV +++ L++ F   G  +  + LF+ + 
Sbjct: 124 YSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEML 183

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
             G+  D     +LI   CK
Sbjct: 184 DVGIRSDVTTSSMLIDILCK 203



 Score = 39.3 bits (90), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 68/148 (45%), Gaps = 7/148 (4%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEG------AIPNSRTYTVMIEHLVNLGKLDSAL 227
           +Y  +M    +TGK   A+   ++++++         P   +Y+++I+ L    + D A 
Sbjct: 82  AYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSIIIDGLCKDRREDEAR 141

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERM 286
           E+F  +    +      Y  L+ GF    ++++AK L NEM D G +       + ++ +
Sbjct: 142 ELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDIL 201

Query: 287 QEMGFIQGANEFLREMLPDKRIKNVRYY 314
            + G +  ANE L  M+    I ++  Y
Sbjct: 202 CKEGKVIEANELLEVMIQRGCILDIVTY 229


>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
          Length = 1351

 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 117/589 (19%), Positives = 229/589 (38%), Gaps = 76/589 (12%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           V HALRSA     AL    +    P   H  ++ + +  ++    R  ++  +  D+   
Sbjct: 139 VIHALRSADGPAEALERFRSAARRPRVVHTTASCNYMLDLMRDHGRVGDMAEVF-DVMQR 197

Query: 132 KFLNVSVN-FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           + +  +V  F  +       G L          ++   +L+  +YN ++    K+G + E
Sbjct: 198 QIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDRE 257

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK---LDSALEVFSALPLMRIKRTSKQYLI 247
           A+E ++ ++ +G +P+ RTY+V+   +V  GK   +++ L +   +    +K     Y I
Sbjct: 258 ALEVYKVMMVDGVVPSVRTYSVL---MVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTI 314

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR-VALERMQEMGFIQGANEFLREM---- 302
            +       RFDEA  +L EM ++G  P      V ++ + + G I  A +   +M    
Sbjct: 315 CIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSD 374

Query: 303 -LPDKRIKNVRYYEDGSDDDEDEN----------DDNNSGV--------------RIAYG 337
             PD R+  +   +  +D+ E ++          D  N  V              R+   
Sbjct: 375 QKPD-RVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEA 433

Query: 338 VQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVA 397
           +++   +  K +      ++  +   L   +F     L   +  H   P    H   ++ 
Sbjct: 434 LEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVL-FIN 492

Query: 398 Y------------------QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
           Y                    G   DV A   +L  LA+ G + +  R+  +L++ G+  
Sbjct: 493 YYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSP 552

Query: 440 PFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD 498
              T  ++I     + K D A+K F+D     C P      +L+ +SL+ TL K  R  +
Sbjct: 553 DTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPD-----VLVVNSLIDTLYKAGRGDE 607

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A  +  ++    + P   T++ L+     +G  K V  L   +  +   P+   +  ++ 
Sbjct: 608 AWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILD 667

Query: 559 AYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
             CK             ++    +PD ++   +   L KE R  EA ++
Sbjct: 668 CLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSI 716



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 112/251 (44%), Gaps = 20/251 (7%)

Query: 45   SIRLAVRSNSSNSL-SSLLNDRLLDP----FIVTHALRSAPNA----------DSALSIM 89
            S  +++++ S NSL   L+++ L+D     F     L   P+             ++ I 
Sbjct: 827  SFGVSLKTGSYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIE 886

Query: 90   EALK-----SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
            E LK         +     T + + + L KS+R  +   L  ++ S  F      +  L+
Sbjct: 887  EMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLL 946

Query: 145  QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204
                 +G +E   + +NE  +     +   YNI+++ +   G   +    F+ ++D+G  
Sbjct: 947  DGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGIN 1006

Query: 205  PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL 264
            P+ ++YT++I+ L   G+L+  L  F  L  M ++     Y +L++G    +R +EA SL
Sbjct: 1007 PDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSL 1066

Query: 265  LNEMRDDGKFP 275
             NEM+  G  P
Sbjct: 1067 FNEMQKKGIVP 1077



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 95/481 (19%), Positives = 176/481 (36%), Gaps = 73/481 (15%)

Query: 174  SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
            +YN +++   + GK  E +    ++      PN  TY  +++ L   G ++ AL++  ++
Sbjct: 626  TYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSM 685

Query: 234  PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA-MRVALERMQEMGFI 292
                       Y  ++ G V  ER++EA S+  +M+     P  A +   L    ++G +
Sbjct: 686  TTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKV-LIPDYATLCTILPSFVKIGLM 744

Query: 293  QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
            + A   ++E           + + GS  D         G+                L   
Sbjct: 745  KEALHIIKEY----------FLQPGSKTDRSSCHSLMEGI----------------LKKA 778

Query: 353  LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW--HFFCWVAYQPGYTHDVYALE 410
              E S E   ++A +        +C +++H    + A   H         G +    +  
Sbjct: 779  GTEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGSYN 838

Query: 411  KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD---- 466
             ++  L     +++ + L A+++  G      T  L++D  G S + +  LK   +    
Sbjct: 839  SLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRK 898

Query: 467  ---------DRTLCGPISK----------FKLM--------LLYSSLLRTLTKCKRDFDA 499
                     +  + G +            + LM          Y  LL  L K  R  DA
Sbjct: 899  GYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDA 958

Query: 500  INVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
             N+  EM+  G   +   ++ L+    + G+ + V  LF  +   G+ PD   + ++I  
Sbjct: 959  ENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDT 1018

Query: 560  YCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
             CK             L    L PD  T  LL   L K  R +EA ++    +K   VP+
Sbjct: 1019 LCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPN 1078

Query: 608  L 608
            L
Sbjct: 1079 L 1079



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/200 (20%), Positives = 84/200 (42%), Gaps = 8/200 (4%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I    L  A   D A  I+  ++ N     +  T   L  VL  + R  + K +   +  
Sbjct: 314 ICIRVLGQARRFDEAYRILAEME-NEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKK 372

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           S      V ++ L+  ++ +G+ + V+  WN  +      +  +Y  V+    + G+ FE
Sbjct: 373 SDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFE 432

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV- 249
           A+E F ++  +G +P   +Y  +I   +   +   ALE+F  + +   K     +++ + 
Sbjct: 433 ALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVLFIN 492

Query: 250 ------EGFVGVERFDEAKS 263
                 E    ++R++  KS
Sbjct: 493 YYGKSGESIKAIQRYELMKS 512



 Score = 40.4 bits (93), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 45/102 (44%)

Query: 174  SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
            +YN+++    K+ +  EAV  F ++  +G +PN  TY  +I HL   GK   A +++  L
Sbjct: 1046 TYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEEL 1105

Query: 234  PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                 K     Y  L+ G+      D A +    M   G  P
Sbjct: 1106 LTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLP 1147



 Score = 39.7 bits (91), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 44/91 (48%)

Query: 143  LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
            L+     S  LE  +S +NE +++  + +  +YN ++    K GK  EA + + +++ +G
Sbjct: 1050 LIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKG 1109

Query: 203  AIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
              PN  TY  +I      G  DSA   +  +
Sbjct: 1110 WKPNVFTYNALIRGYSVSGSTDSAYAAYGRM 1140


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 120/532 (22%), Positives = 203/532 (38%), Gaps = 77/532 (14%)

Query: 36  YLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSN 95
           Y R+   +D++ L +     N L  L   +  D  +  H L       S + ++E + S 
Sbjct: 123 YARQQLFVDAVDLVL-----NQLDPLFGIQA-DTVVYNHLLNVLVEG-SKMKLLETVYSE 175

Query: 96  PNFSHNQSTLHALATVLAKSQRNHELKT---LIGDISSSKFLNVSVNFMNLMQWYSTSGD 152
                 +  +    T++    R H+++T   ++ ++SSS        F  LMQ +   G 
Sbjct: 176 MGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGS 235

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
           ++  L       +     +  + N++++ Y K G+  +A+   +Q I  G  P+  TY  
Sbjct: 236 IKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNT 295

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
            +  L   G +  AL+V   +           Y I+V       + +EAK +LN+M + G
Sbjct: 296 FVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERG 355

Query: 273 KFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGV 332
             P                                               D    N   V
Sbjct: 356 CLP-----------------------------------------------DITTFNTLIV 368

Query: 333 RIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHF 392
            +  G +L+  LD  A   TL   SP+V +      F      +CKV      P+ A   
Sbjct: 369 ALCSGNRLEEALD-LARQVTLKGLSPDVYT------FNILINALCKV----GDPQLALRL 417

Query: 393 FCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYG 452
           F  +    G T D      ++  L   G +     L+ ++ S G      T   IID  G
Sbjct: 418 FEEMK-SSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIID--G 474

Query: 453 ISKKA--DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSG 510
           + KK   + A + F D   L G IS+  +   +++L+  L K KR  DA  ++ +MI  G
Sbjct: 475 LCKKMRIEEAEEVF-DQMDLQG-ISRNAIT--FNTLIDGLCKDKRIDDANQLISQMISEG 530

Query: 511 IVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           + P+  T++ ++ H+  QGD K    +   +  NG E D   +  LI   CK
Sbjct: 531 LQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCK 582



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 510 GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------ 563
           GI  D   ++ L+         K+++ ++S + + G++PD   F  L++A C+       
Sbjct: 145 GIQADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTA 204

Query: 564 ------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
                 +S+S + PD  T   L +   +EG  K A  V+ R  ++   P+
Sbjct: 205 VLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPT 254



 Score = 39.7 bits (91), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 39/202 (19%), Positives = 82/202 (40%), Gaps = 1/202 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+ +AL    +   AL + E +KS+   + ++ T + L   L    +  +   L+ ++ S
Sbjct: 400 ILINALCKVGDPQLALRLFEEMKSS-GCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMES 458

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           +     +V +  ++        +E     +++   +    +  ++N ++    K  +  +
Sbjct: 459 AGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDD 518

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A +   Q+I EG  PN+ TY  ++ H    G +  A ++   +     +     Y  L+ 
Sbjct: 519 ANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLIN 578

Query: 251 GFVGVERFDEAKSLLNEMRDDG 272
           G     R   A  LL  MR  G
Sbjct: 579 GLCKAGRTQVALKLLRGMRIKG 600


>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 105/517 (20%), Positives = 215/517 (41%), Gaps = 54/517 (10%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
           NF H+ +T  AL   L ++    E+   I ++  S  +    +   +++    +  +   
Sbjct: 119 NFEHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKA 178

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG-AIPNSRTYTVMIE 215
           LS + + + R    ++ +YN ++ +  + G + +  E + ++ +EG  +P++ TY+ +I 
Sbjct: 179 LSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIA 238

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               LG+ DSA+ +F  +    +  T+K Y  ++  +  + R ++A  L+ EM++ G   
Sbjct: 239 AFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGC-- 296

Query: 276 GRAMRV-----ALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNS 330
             A+ V      ++ + + G ++ A      ML +    +V    +        N    +
Sbjct: 297 --ALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLI------NLLGKA 348

Query: 331 GVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW 390
           G R+A  ++L   ++         + +P VV          T   V K L  F+S   A 
Sbjct: 349 G-RLADAIKLFEEMESL-------QCTPNVV----------TYNTVIKAL--FESKARAS 388

Query: 391 HFFCWVAY--QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII 448
             F W     + G     +    ++    +   VE    L+ ++   G     +    +I
Sbjct: 389 EAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLI 448

Query: 449 DFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF 508
           +  G +K+ +AA + F + R  CG    +    +Y+ +++ L KC R  +A+++  EM  
Sbjct: 449 NALGKAKRYEAANELFQELRENCG----YSSARVYAVMIKHLGKCGRLSEAVDLFNEMKK 504

Query: 509 SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY----- 563
            G  PDV  ++ LM      G       L   + +NG  PD     +++  + +      
Sbjct: 505 LGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKG 564

Query: 564 -------LSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
                  + NS + PD  +   +   L + G  +EAA
Sbjct: 565 AIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAA 601



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 93/227 (40%), Gaps = 4/227 (1%)

Query: 89  MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS 148
           ME+L+  PN     + + AL        R  E       +  +  +  S  +  L+  + 
Sbjct: 361 MESLQCTPNVVTYNTVIKAL---FESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFC 417

Query: 149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSR 208
            +  +E  L    E  ++       +Y  +++   K  +   A E F+++ +     ++R
Sbjct: 418 KTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSAR 477

Query: 209 TYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
            Y VMI+HL   G+L  A+++F+ +  +        Y  L+ G V V   DEA SLL  M
Sbjct: 478 VYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTM 537

Query: 269 RDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
            ++G  P   +  + L      G  +GA E    M   K   +V  Y
Sbjct: 538 EENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSY 584



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 85/210 (40%), Gaps = 7/210 (3%)

Query: 355 EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT 414
           +W P+    L   K     RLV +VL+          FF W   +  + HD      ++ 
Sbjct: 73  KWGPDAEKALEVLKLKVDHRLVREVLKIDVEIHVKIQFFKWAGKRRNFEHDSTTYMALIH 132

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGP 473
            L   G +  + + I ++      +  + +  I+   G +K  + AL  F+  +   C P
Sbjct: 133 CLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKALSIFYQIKGRKCKP 192

Query: 474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSG-IVPDVQTFSGLMYHFALQGDEK 532
            S       Y+S++  L +         +  EM   G  +PD  T+S L+  F   G + 
Sbjct: 193 TSN-----TYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGRDD 247

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
               LF  +++NG+ P A ++  ++  Y K
Sbjct: 248 SAISLFDEMKENGLHPTAKIYTTILGIYFK 277



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 88/214 (41%), Gaps = 7/214 (3%)

Query: 59  SSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRN 118
           SS     L+D F  T+ +      + AL ++E +     F+   +   +L   L K++R 
Sbjct: 405 SSFTYSILIDGFCKTNRV------EKALLLLEEMDEK-GFAPCPAAYCSLINALGKAKRY 457

Query: 119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV 178
                L  ++  +   + +  +  +++     G L   +  +NE ++        +YN +
Sbjct: 458 EAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNAL 517

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI 238
           MS   + G   EA    R + + G  P+  ++ +++      G    A+E+F+ +   +I
Sbjct: 518 MSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKI 577

Query: 239 KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           K     Y  ++        F+EA  L+ EM   G
Sbjct: 578 KPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKG 611


>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Vitis vinifera]
          Length = 725

 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 105/517 (20%), Positives = 215/517 (41%), Gaps = 54/517 (10%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
           NF H+ +T  AL   L ++    E+   I ++  S  +    +   +++    +  +   
Sbjct: 119 NFEHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKA 178

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG-AIPNSRTYTVMIE 215
           LS + + + R    ++ +YN ++ +  + G + +  E + ++ +EG  +P++ TY+ +I 
Sbjct: 179 LSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIA 238

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               LG+ DSA+ +F  +    +  T+K Y  ++  +  + R ++A  L+ EM++ G   
Sbjct: 239 AFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGC-- 296

Query: 276 GRAMRV-----ALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNS 330
             A+ V      ++ + + G ++ A      ML +    +V    +        N    +
Sbjct: 297 --ALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLI------NLLGKA 348

Query: 331 GVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW 390
           G R+A  ++L   ++         + +P VV          T   V K L  F+S   A 
Sbjct: 349 G-RLADAIKLFEEMESL-------QCTPNVV----------TYNTVIKAL--FESKARAS 388

Query: 391 HFFCWVAY--QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII 448
             F W     + G     +    ++    +   VE    L+ ++   G     +    +I
Sbjct: 389 EAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLI 448

Query: 449 DFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF 508
           +  G +K+ +AA + F + R  CG    +    +Y+ +++ L KC R  +A+++  EM  
Sbjct: 449 NALGKAKRYEAANELFQELRENCG----YSSARVYAVMIKHLGKCGRLSEAVDLFNEMKK 504

Query: 509 SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY----- 563
            G  PDV  ++ LM      G       L   + +NG  PD     +++  + +      
Sbjct: 505 LGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKG 564

Query: 564 -------LSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
                  + NS + PD  +   +   L + G  +EAA
Sbjct: 565 AIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAA 601



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 89/215 (41%), Gaps = 4/215 (1%)

Query: 89  MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS 148
           ME+L+  PN     + + AL        R  E       +  +  +  S  +  L+  + 
Sbjct: 361 MESLQCTPNVVTYNTVIKAL---FESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFC 417

Query: 149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSR 208
            +  +E  L    E  ++       +Y  +++   K  +   A E F+++ +     ++R
Sbjct: 418 KTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSAR 477

Query: 209 TYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
            Y VMI+HL   G+L  A+++F+ +  +        Y  L+ G V V   DEA SLL  M
Sbjct: 478 VYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTM 537

Query: 269 RDDGKFPG-RAMRVALERMQEMGFIQGANEFLREM 302
            ++G  P   +  + L      G  +GA E    M
Sbjct: 538 EENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRM 572



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 85/210 (40%), Gaps = 7/210 (3%)

Query: 355 EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT 414
           +W P+    L   K     RLV +VL+          FF W   +  + HD      ++ 
Sbjct: 73  KWGPDAEKALEVLKLKVDHRLVREVLKIDVEIHVKIQFFKWAGKRRNFEHDSTTYMALIH 132

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGP 473
            L   G +  + + I ++      +  + +  I+   G +K  + AL  F+  +   C P
Sbjct: 133 CLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKALSIFYQIKGRKCKP 192

Query: 474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSG-IVPDVQTFSGLMYHFALQGDEK 532
            S       Y+S++  L +         +  EM   G  +PD  T+S L+  F   G + 
Sbjct: 193 TSN-----TYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGRDD 247

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
               LF  +++NG+ P A ++  ++  Y K
Sbjct: 248 SAISLFDEMKENGLHPTAKIYTTILGIYFK 277



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 87/214 (40%), Gaps = 7/214 (3%)

Query: 59  SSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRN 118
           SS     L+D F  T+        + AL ++E +     F+   +   +L   L K++R 
Sbjct: 405 SSFTYSILIDGFCKTN------RVEKALLLLEEMDEK-GFAPCPAAYCSLINALGKAKRY 457

Query: 119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV 178
                L  ++  +   + +  +  +++     G L   +  +NE ++        +YN +
Sbjct: 458 EAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNAL 517

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI 238
           MS   + G   EA    R + + G  P+  ++ +++      G    A+E+F+ +   +I
Sbjct: 518 MSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKI 577

Query: 239 KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           K     Y  ++        F+EA  L+ EM   G
Sbjct: 578 KPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKG 611


>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
 gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 632

 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 116/551 (21%), Positives = 225/551 (40%), Gaps = 61/551 (11%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           +D ++V   +++    +  +          N+ H+ ST  AL   L   ++  E+  +I 
Sbjct: 88  VDHWLVREVMKTDVGVNVKMQFFRWAAKKRNYQHDTSTYMALIHCLELVEQYGEMWKMIQ 147

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELV---LSTWNEYRQRAKLLSTESYNIVMSVYA 183
           ++  S    V+   M L Q     G+ +++   ++ + + + R    + ++YN ++ +  
Sbjct: 148 EMVRSPICVVTP--MELSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLI 205

Query: 184 KTGKNFEAVETFRQVIDEGAI-PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
             G+  +  E + ++ +EG   P++ TY+ +I     LG+ DSA+ + + +    ++ T+
Sbjct: 206 HEGQYEKVHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTA 265

Query: 243 KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER-MQEMGFIQGANEFLRE 301
           K Y +++  F  ++    A SL  EMR     P       L R + + G I  A  F  E
Sbjct: 266 KIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHE 325

Query: 302 MLPDKRIKNVRYYEDGSDDDEDENDDNN---SGVRIAYGVQLKPWLDPKALANTLDEWSP 358
           M            ED   D    N+  N      R+  G++L    +   +++ +    P
Sbjct: 326 M----------QREDCKPDTVVMNNMINFLGKAGRLDDGLKL---FEEMGVSHCI----P 368

Query: 359 EVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQ--PGYTHDVYALEKMLTIL 416
            VV          T   + K L  F+S       F W       G +   +    ++   
Sbjct: 369 NVV----------TYNTIIKAL--FESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGF 416

Query: 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK 476
            +   +E    L+ ++   G     +    +ID  G +K+ D A + F + +  CG  S 
Sbjct: 417 CKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSA 476

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA--LQGDEKIV 534
                +Y+ +++ L K  R  DAIN+ +EM   G  P+V  ++ LM   A     DE + 
Sbjct: 477 ----RVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALT 532

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKS 582
                 ++++G  PD   + +++    K             + NS + PDA +   +  +
Sbjct: 533 T--MRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSA 590

Query: 583 LWKEGRRKEAA 593
           L   G  +EAA
Sbjct: 591 LSHAGMFEEAA 601



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 93/214 (43%), Gaps = 21/214 (9%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRN------- 118
           L+D F  T+ +      + A+ ++E +     F    +   +L   L K++R        
Sbjct: 412 LIDGFCKTNRI------EKAMMLLEEMDEK-GFPPCPAAYCSLIDALGKAKRYDLACELF 464

Query: 119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV 178
            ELK   G  SS++   V +  +        +G L+  ++ ++E  +     +  +YN +
Sbjct: 465 QELKENCGS-SSARVYAVMIKHL------GKAGRLDDAINLFDEMSKLGCTPNVYAYNAL 517

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI 238
           MS  A+     EA+ T R++ + G +P+  +Y +++  L   G    A+E+ + +    I
Sbjct: 518 MSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTI 577

Query: 239 KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           K  +  Y  ++        F+EA  L+ EM   G
Sbjct: 578 KPDAVSYNTVLSALSHAGMFEEAAELMKEMNALG 611



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 110/263 (41%), Gaps = 40/263 (15%)

Query: 355 EWSP------EVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDV-- 406
           +W P      EV+ L  D    W  R   +V++          FF W A +  Y HD   
Sbjct: 72  KWGPDAERALEVLMLRVDH---WLVR---EVMKTDVGVNVKMQFFRWAAKKRNYQHDTST 125

Query: 407 -YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465
             AL   L ++ ++G  E+   +   +RS    +    +  +I   G +K    A+  F+
Sbjct: 126 YMALIHCLELVEQYG--EMWKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAITIFY 183

Query: 466 DDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVL-EEMIFSGIV-PDVQTFSGLM 522
             +   C P ++      Y+S++  L   +  ++ ++ L  EM   G   PD  T+S L+
Sbjct: 184 QIKARKCQPTAQ-----AYNSMIIMLIH-EGQYEKVHELYNEMSNEGHCHPDTVTYSALI 237

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSN-------------L 569
             F   G +    +L + +++NG++P A ++ ++I  + K L N +              
Sbjct: 238 SAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFK-LDNVHGALSLFEEMRYMYC 296

Query: 570 MPDAATKELLKKSLWKEGRRKEA 592
            PD  T   L + L K GR  EA
Sbjct: 297 RPDVFTYTELIRGLGKAGRIDEA 319



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 88/223 (39%), Gaps = 14/223 (6%)

Query: 16  FTQLQTRSFVRAPFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH- 74
           F +++      +PFT  +        LID      R   +  L   ++++   P    + 
Sbjct: 394 FERMKGSGISPSPFTYSI--------LIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYC 445

Query: 75  ----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
               AL  A   D A  + + LK N   S +      +   L K+ R  +   L  ++S 
Sbjct: 446 SLIDALGKAKRYDLACELFQELKENCG-SSSARVYAVMIKHLGKAGRLDDAINLFDEMSK 504

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                    +  LM   + +  L+  L+T  + ++   L    SYNI+++  AKTG    
Sbjct: 505 LGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHR 564

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           A+E    + +    P++ +Y  ++  L + G  + A E+   +
Sbjct: 565 AMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEM 607



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 43/233 (18%), Positives = 81/233 (34%), Gaps = 2/233 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+     S        S  E +K +   S +  T   L     K+ R  +   L+ ++  
Sbjct: 376 IIKALFESKSRVSEVFSWFERMKGS-GISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDE 434

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
             F      + +L+     +   +L    + E ++     S   Y +++    K G+  +
Sbjct: 435 KGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDD 494

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A+  F ++   G  PN   Y  ++  L     LD AL     +           Y I++ 
Sbjct: 495 AINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILN 554

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREM 302
           G         A  +L  M++    P   +    L  +   G  + A E ++EM
Sbjct: 555 GLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEM 607


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 116/544 (21%), Positives = 223/544 (40%), Gaps = 56/544 (10%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           V   L+S  + + A S   ++   P   H   T + +  +L ++ R  E   ++ ++   
Sbjct: 92  VYRVLKSISDPNQAFSFFNSVAEMPRVIHTTETCNYVLEML-RAHRRVEDMVVVFNLMQK 150

Query: 132 KFLNVSVN-FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           + +  S+N ++ + +     G L        + R+   +L+  SY  ++ +  K+G   E
Sbjct: 151 QIIKRSINTYLTIFKVLYIRGGLREAPVALEKMRKVGFVLNGYSYIGLIHLLLKSGFCRE 210

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK---LDSALEVFSALPLMRIKRTSKQYLI 247
           A++ +R+++ EG  P+ +TY+ +   +V LGK   +++ + +   +  + ++     + I
Sbjct: 211 ALKVYRRMVSEGIKPSLKTYSAL---MVALGKRRDIETVMGLLQEMESLGLRPNIYTFTI 267

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDK 306
            +       + DEA  +L  M D G  P      V ++ +   G +  A E   +M    
Sbjct: 268 CIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASS 327

Query: 307 RIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKP-WLDPKALANTLDEWSPEVV--SL 363
              +   Y    D   D  D +           +K  W + +A     D + P+VV  ++
Sbjct: 328 HKPDRVTYITLLDKFSDHGDLD----------AIKEFWSEMEA-----DGYLPDVVTFTI 372

Query: 364 LADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVE 423
           L DA        +CKV +  ++  T       V  + G   +++    ++  L R   ++
Sbjct: 373 LIDA--------LCKVGKVDEAFGTL-----DVMKKQGVAPNLHTYNTLICGLLRLNRLD 419

Query: 424 LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLY 483
               L   + S G+     T  L ID+YG S ++  A+K F   +T  G +     ++  
Sbjct: 420 EALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKT-NGIVPN---IVAC 475

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           ++ L +L +  R  +A      +   G+ PD  T++ LM  +   G      KL S + +
Sbjct: 476 NASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEE 535

Query: 544 NGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKE 591
           NG +P+  +   LI    K             +    L P   T   L   L KEGR +E
Sbjct: 536 NGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQE 595

Query: 592 AAAV 595
           A A+
Sbjct: 596 ATAL 599



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 97/455 (21%), Positives = 174/455 (38%), Gaps = 52/455 (11%)

Query: 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT 211
           D+E V+    E        +  ++ I + +  + GK  EA    +++ D G  P+  TYT
Sbjct: 242 DIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYT 301

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
           V+I+ L N GKL++A E+F  +     K     Y+ L++ F      D  K   +EM  D
Sbjct: 302 VLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEAD 361

Query: 272 GKFPGRA-MRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNS 330
           G  P      + ++ + ++G +  A   L  M       N+  Y                
Sbjct: 362 GYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYN--------------- 406

Query: 331 GVRIAYGVQLKPWLDPKALANTLDEWSPEVVS----LLADAKFVWTTRLVCKVLRHFKSP 386
              I   ++L    +   L N+++    E  +    L  D  +   +    K ++ F+  
Sbjct: 407 -TLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFID--YYGKSGESGKAIKTFEKM 463

Query: 387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
           +T            G   ++ A    L  LA  G +E        L+  G+     T  +
Sbjct: 464 KTN-----------GIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNI 512

Query: 447 IIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEE 505
           ++  YG + + D A+K   + +   C P      +++ +SL+ TL K  R  +A  + + 
Sbjct: 513 LMRCYGKAGRVDDAIKLLSEMEENGCDP-----EVVIINSLIDTLYKADRVDEAWKMFQR 567

Query: 506 MIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--- 562
           M    + P V T++ L+     +G  +    LF  +  +   P+   F  L+   CK   
Sbjct: 568 MKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGE 627

Query: 563 ---------YLSNSNLMPDAATKELLKKSLWKEGR 588
                     ++  N  PD  T   +   L KE R
Sbjct: 628 VDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENR 662



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 102/230 (44%), Gaps = 2/230 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I    L  A   D A  I++ +  +     +  T   L   L  + + +  K L   + +
Sbjct: 267 ICIRILGRAGKIDEAYGILKRM-DDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKA 325

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           S      V ++ L+  +S  GDL+ +   W+E      L    ++ I++    K GK  E
Sbjct: 326 SSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDE 385

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A  T   +  +G  PN  TY  +I  L+ L +LD ALE+F+++  + ++ T+  Y++ ++
Sbjct: 386 AFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFID 445

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFL 299
            +       +A     +M+ +G  P   A   +L  + E G ++ A EF 
Sbjct: 446 YYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFF 495



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 124/590 (21%), Positives = 225/590 (38%), Gaps = 98/590 (16%)

Query: 82   ADSALSIMEALKSN---PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV 138
            +  A+   E +K+N   PN     ++L++LA    +  R  E K     +        ++
Sbjct: 453  SGKAIKTFEKMKTNGIVPNIVACNASLYSLA----EQGRLEEAKEFFNGLKKCGLAPDAI 508

Query: 139  NFMNLMQWYSTSG-----------------DLELVL---------------STWNEYRQR 166
             +  LM+ Y  +G                 D E+V+                 W  + QR
Sbjct: 509  TYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMF-QR 567

Query: 167  AKLL----STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
             K +    +  +YN +++   K G+  EA   F+ +I +   PN+ ++  +++ L   G+
Sbjct: 568  MKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGE 627

Query: 223  LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA 282
            +D AL++   +  M        Y  ++ G +   R + A  L ++M+         +   
Sbjct: 628  VDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVNYAFWLFHQMKKVIYPDYVTLCTL 687

Query: 283  LERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKP 342
            L  + + G I+ A    +E      + +V  + DGS       +D   G+ I   +    
Sbjct: 688  LPGVIKDGRIEDAFRVAKEF-----VHHVGDHADGS-----FWEDLMGGILIEAEIGQSI 737

Query: 343  WLDPKALANTLDE----WSPEVVSLLADAKFVWTTRLVCKVLRHF--------------- 383
                  + NT+ E      P V  L    K V    +  K+ + F               
Sbjct: 738  LFAESLVCNTICEDDSVLIPLVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDG 797

Query: 384  ----KSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
                +  E AW  F +     G T DV+     L  L + G ++ +  L  ++   G + 
Sbjct: 798  LLKARLTEMAWGLF-YKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCK- 855

Query: 440  PFSTIRLIIDFYGI--SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDF 497
            P +TI   I  +G+  S   D A+  ++D   + G  S       Y  L+  L K  R  
Sbjct: 856  P-NTITHNIVIFGLVKSNSLDKAIDLYYD--LMSGDFSPTPWT--YGPLIDGLLKLGRLE 910

Query: 498  DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
            +A    EEM+  G +P+   ++ LM  F  QGD +   +LF  + + G+ PD   + +++
Sbjct: 911  EAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMV 970

Query: 558  QAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
               C            + L  S L PD     L+   L +  R +EA ++
Sbjct: 971  DCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSL 1020



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 78/164 (47%)

Query: 112  LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
            L KS    +   L  D+ S  F      +  L+      G LE     + E      + +
Sbjct: 868  LVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPN 927

Query: 172  TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
               YNI+M+ + K G    A E FR+++ EG  P+ ++Y++M++ L  +GK+D AL  F 
Sbjct: 928  CPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFE 987

Query: 232  ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             L L  +      Y +++ G    +R +EA SL +EMR+ G  P
Sbjct: 988  ELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITP 1031



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 76/149 (51%), Gaps = 4/149 (2%)

Query: 412  MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
            ++    + G VE    L  ++  +G+R    +  +++D   +  K D AL  F + + L 
Sbjct: 934  LMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELK-LS 992

Query: 472  GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
            G       ++ Y+ ++  L + +R  +A+++ +EM   GI PD+ T++ L+ +  + G  
Sbjct: 993  GLDPD---LVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMV 1049

Query: 532  KIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
            +   K++  ++  G+EP+ + +  LI+ +
Sbjct: 1050 EEAGKMYEELQLKGLEPNVFTYNALIRGH 1078



 Score = 39.3 bits (90), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 86/218 (39%), Gaps = 33/218 (15%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTL 470
           ++  L +   +E V  L+ ++ S G+R    T  + I   G + K D A       D   
Sbjct: 233 LMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAG 292

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
           CGP      ++ Y+ L+  L    +  +A  +  +M  S   PD  T+  L+  F+  GD
Sbjct: 293 CGPD-----VVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGD 347

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRK 590
              +++ +S +     E D Y+                  PD  T  +L  +L K G+  
Sbjct: 348 LDAIKEFWSEM-----EADGYL------------------PDVVTFTILIDALCKVGKVD 384

Query: 591 EAAAVEERCEKINDVPSLALRGHIWAVSSADLTRVHSI 628
           EA    +  +K    P+L    H +      L R++ +
Sbjct: 385 EAFGTLDVMKKQGVAPNL----HTYNTLICGLLRLNRL 418


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 104/446 (23%), Positives = 181/446 (40%), Gaps = 69/446 (15%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVID----EGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           +YN V+S + K  +    +E+ + V+D    +G  P+  T+ +MI      GK+D AL+V
Sbjct: 46  AYNAVISGFCKANR----IESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKV 101

Query: 230 FSAL-PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER-MQ 287
           F  L      K T   Y IL+E ++     DEA  LL+EM   G  P       + R + 
Sbjct: 102 FEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLC 161

Query: 288 EMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVR---IAYGVQLKPWL 344
           + G +  A EF+R +                         N+ G +   I Y + L+  L
Sbjct: 162 KEGKVDRAFEFVRTL-------------------------NSRGCKPDVITYNILLRALL 196

Query: 345 DPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTH 404
           + +   +  ++W  E+ S   +   V  + L+  + R  K  E+       V  + G T 
Sbjct: 197 N-QGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVN--LVKVMKEKGLTP 253

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           D Y  + ++    R G +++    +  +  DG          I+     +   D A++ F
Sbjct: 254 DAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIF 313

Query: 465 HD-DRTLCGP-ISKFKLML--LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
              D   C P +S +  ML  L+SS  R        + A+ ++ +M+  GI PDV T++ 
Sbjct: 314 GKLDEVGCPPNVSSYNTMLSALWSSGDR--------YRALGMISQMLSKGIDPDVITYNS 365

Query: 521 LMYHFALQG--DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSN 566
           L+      G  DE I   L + +     +P+   +K ++   CK             +  
Sbjct: 366 LISCLCRDGMVDEAI--GLLADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIE 423

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEA 592
           +   P+  T  LL + +   G R +A
Sbjct: 424 NGCQPNETTYTLLIEGIGFSGSRTQA 449



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 85/199 (42%), Gaps = 9/199 (4%)

Query: 81  NADSALSIMEALK--SNPN-FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVS 137
           N D A  +M  L+    P+ F++N     A+ +   K+ R    KT++  +    F    
Sbjct: 25  NIDKATRVMGILEKHGKPDVFAYN-----AVISGFCKANRIESAKTVLDRMKRKGFSPDV 79

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE-SYNIVMSVYAKTGKNFEAVETFR 196
           V    ++  +   G ++L L  + E  +      T  +Y I++  Y   G   EA++   
Sbjct: 80  VTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLD 139

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           +++  G  P++ TY V+   L   GK+D A E    L     K     Y IL+   +   
Sbjct: 140 EMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQG 199

Query: 257 RFDEAKSLLNEMRDDGKFP 275
           ++DE +  ++E+   G  P
Sbjct: 200 KWDEGEKWMSEIFSRGCEP 218



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 70/159 (44%), Gaps = 2/159 (1%)

Query: 133 FLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV 192
           FL   VN+  +M     +G+ +  +  + +  +     +  SYN ++S    +G  + A+
Sbjct: 286 FLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRAL 345

Query: 193 ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
               Q++ +G  P+  TY  +I  L   G +D A+ + + +   R +     Y  ++ G 
Sbjct: 346 GMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGL 405

Query: 253 VGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGF 291
               R D+A  +L  M ++G  P       L  ++ +GF
Sbjct: 406 CKAHRIDDAIEVLAAMIENGCQPNETTYTLL--IEGIGF 442



 Score = 46.6 bits (109), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 51/253 (20%), Positives = 98/253 (38%), Gaps = 44/253 (17%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP-FSTIRLIIDFYGISKKADA 459
           G++ DV     M+      G ++L  ++  +L  D    P   T  ++I+ Y +    D 
Sbjct: 74  GFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDE 133

Query: 460 ALKAFHD----------------DRTLC--GPISK-FKLM------------LLYSSLLR 488
           ALK   +                 R LC  G + + F+ +            + Y+ LLR
Sbjct: 134 ALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLR 193

Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548
            L    +  +    + E+   G  P+V T+S L+      G  +    L  ++++ G+ P
Sbjct: 194 ALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTP 253

Query: 549 DAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVE 596
           DAY +  LI A+C+             +     +PD      +  +L K G    A  + 
Sbjct: 254 DAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIF 313

Query: 597 ERCEKINDVPSLA 609
            + +++   P+++
Sbjct: 314 GKLDEVGCPPNVS 326



 Score = 39.7 bits (91), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 89/212 (41%), Gaps = 21/212 (9%)

Query: 58  LSSLLNDRLLDPFIVTH-----ALRSAPNADSALSI---MEALKSNPNFSHNQSTLHALA 109
           L  ++ D  L P IV +     AL    N D A+ I   ++ +   PN S   + L AL 
Sbjct: 278 LDCMICDGFL-PDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALW 336

Query: 110 TVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKL 169
           +    S   +    +I  + S       + + +L+      G ++  +    +       
Sbjct: 337 S----SGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQ 392

Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
            +  SY  V+    K  +  +A+E    +I+ G  PN  TYT++IE +   G    A+E+
Sbjct: 393 PNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEGIGFSGSRTQAMEL 452

Query: 230 FSALPLMR------IKRTSKQYLIL--VEGFV 253
            ++L +M        KR +K + +L   +GF+
Sbjct: 453 ANSLYIMNAISEDSFKRLNKTFPLLDVYKGFI 484


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 128/658 (19%), Positives = 252/658 (38%), Gaps = 104/658 (15%)

Query: 11  ILSKAFTQLQTRSFVRAP--FTNKLALYLRRAQLIDSIRL--AVRSNSSNSLSSLLNDRL 66
           I+   F Q+Q   +  +   FT  + ++ R  +L  ++ L   ++SN  ++   L N   
Sbjct: 216 IMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYN--- 272

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
               +       A   D A      +KS+     +  T  ++  VL K  R  E   +  
Sbjct: 273 ----VCIDCFGKAGKVDMAWKFFHEIKSH-GLLPDDVTYTSMIGVLCKGNRLDEAVEIFE 327

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
            +  ++ +  +  +  ++  Y ++G  +   S     + R  + S  +YN +++   K G
Sbjct: 328 QMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKG 387

Query: 187 KNFEAVETFRQ--------------VID--------------------EGAIPNSRTYTV 212
           +  EA+ TF +              +ID                     G  PN  T  +
Sbjct: 388 RLGEALRTFEEMKKDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNI 447

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           MI+ L    KLD A  +F  +           +  L++G     R D+A  L  +M D  
Sbjct: 448 MIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSD 507

Query: 273 KFPGRAMRVAL-ERMQEMGFIQGANEFLREML-----PDKRIKNVRYYEDGSDDDEDEND 326
           K P   +  +L +   + G  +  ++  +EM+     PD R+ N         D   +  
Sbjct: 508 KIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYM------DCVFKAG 561

Query: 327 DNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSP 386
           +   G  +   ++ + ++ P  ++ ++      ++  L  A F   T             
Sbjct: 562 ETGKGRALFEEIKSRGFI-PDVMSYSI------LIHGLVKAGFARET------------- 601

Query: 387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
              +  F +   + G   D +A    +    + G V    +L+ ++++ G +    T   
Sbjct: 602 ---YELF-YAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGS 657

Query: 447 IIDFYGISKKADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEE 505
           +ID      + D A   F + ++     +  +L +++YSSL+    K  R  +A  ++EE
Sbjct: 658 VIDGLAKIDRLDEAYMLFEEAKS-----NGLELNVVIYSSLIDGFGKVGRIDEAYLIMEE 712

Query: 506 MIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL--FSMVRQNGVEPDAYMFKVLIQAYCKY 563
           ++  G+ P+V T++ L+   AL   E+I + L  F  ++     P+   + +LI   C+ 
Sbjct: 713 LMQKGLTPNVYTWNCLLD--ALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRV 770

Query: 564 ------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA 609
                       +    L P+  T   +   L K G   EA+++ ER +    VP  A
Sbjct: 771 RKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSA 828



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 6/191 (3%)

Query: 86  LSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN-FMNLM 144
           +  M   K  P FS   + + AL++V    Q +  + TL   +    +  VSV+ F  ++
Sbjct: 186 IQCMRKFKFRPAFSAYTTLIGALSSV----QESDIMLTLFHQMQELGY-EVSVHLFTTVI 240

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204
           + ++  G L+  LS  +E +          YN+ +  + K GK   A + F ++   G +
Sbjct: 241 RVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLL 300

Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL 264
           P+  TYT MI  L    +LD A+E+F  +   R    +  Y  ++ G+    +FDEA SL
Sbjct: 301 PDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSL 360

Query: 265 LNEMRDDGKFP 275
           L   +  G  P
Sbjct: 361 LERQKARGCIP 371



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 58/268 (21%), Positives = 107/268 (39%), Gaps = 24/268 (8%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
           W P+V + L+       T LV  VLR  K    A  +F W   +        A + +L +
Sbjct: 78  WGPDVENALSLFVESPKTDLVIGVLRRAKDVNQAISYFRWTERKTDQALCPEAYDSLLLV 137

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFST-IRLIIDFYGISKKADAALKAFHDDRTLCGPI 474
           +A++   +  ++++ ++   G      T I LI+       K++   + F  D   C  +
Sbjct: 138 MAKNVKFDYFEQILGEMSIAGFGPSTKTCIELILS----CIKSNKLREGF--DLIQC--M 189

Query: 475 SKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
            KFK       Y++L+  L+  +     + +  +M   G    V  F+ ++  FA +G  
Sbjct: 190 RKFKFRPAFSAYTTLIGALSSVQESDIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRL 249

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELL 579
                L   ++ N +  D  ++ V I  + K             + +  L+PD  T   +
Sbjct: 250 DAALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSM 309

Query: 580 KKSLWKEGRRKEAAAVEERCEKINDVPS 607
              L K  R  EA  + E+ E+  +VP 
Sbjct: 310 IGVLCKGNRLDEAVEIFEQMEQNRNVPC 337


>gi|18057130|gb|AAL58153.1|AC093093_26 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 704

 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 83/169 (49%), Gaps = 3/169 (1%)

Query: 68  DPFIVTHALRSAPNADSALSIME-ALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           D   V   L++ P    A      A  +   F H++ T  ++  +L ++ R   +  L+ 
Sbjct: 413 DSHTVARVLKAHPPLHKAFLFFRLAAGAGGGFRHDRFTYTSMLHLLGEAGRVPAMMRLLA 472

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR-AKLLST-ESYNIVMSVYAK 184
           ++  +     +  F  +M W + +GD++  +  W E R R  K   T  SY   + +   
Sbjct: 473 EMLRAGVDPDAATFTTVMHWLAHAGDVDAAMRVWEEMRARKGKCRPTLVSYTACVKILFD 532

Query: 185 TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
            G+  EA E F++++ EG  P+ +TYTV+IEHL N+GK ++ +E+   +
Sbjct: 533 AGRPAEAREVFQEMVAEGLRPSCKTYTVLIEHLANVGKFEATMEIMDKM 581



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 101/216 (46%), Gaps = 4/216 (1%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVA-YQPGYTHDVYALEKMLT 414
           WS     LL+     W +  V +VL+       A+ FF   A    G+ HD +    ML 
Sbjct: 397 WSAARPLLLSLPGLAWDSHTVARVLKAHPPLHKAFLFFRLAAGAGGGFRHDRFTYTSMLH 456

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI 474
           +L   G V  + RL+A++   G+    +T   ++ +   +   DAA++ + + R   G  
Sbjct: 457 LLGEAGRVPAMMRLLAEMLRAGVDPDAATFTTVMHWLAHAGDVDAAMRVWEEMRARKGKC 516

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
                ++ Y++ ++ L    R  +A  V +EM+  G+ P  +T++ L+ H A  G  +  
Sbjct: 517 RP--TLVSYTACVKILFDAGRPAEAREVFQEMVAEGLRPSCKTYTVLIEHLANVGKFEAT 574

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM 570
            ++   +++ GVEPD  +  +L+Q  C     +++M
Sbjct: 575 MEIMDKMQEAGVEPDKALCNILVQK-CSRAGETSVM 609


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 103/471 (21%), Positives = 188/471 (39%), Gaps = 78/471 (16%)

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
           L +VL  ++E+ Q     +TESYNI+M+   + GK  EA     ++  +G IP+  +YT 
Sbjct: 91  LGMVLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTT 150

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +I+   ++G+L   +++   + L  +K     Y  ++       +  E + +L EM   G
Sbjct: 151 IIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRG 210

Query: 273 KFPGRAMRVAL-ERMQEMGFIQGANEFL-----REMLPDKRIKNVRYYEDGSDDDEDEND 326
            FP   +   L +   ++G  Q A +       RE++PD                     
Sbjct: 211 VFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDS-------------------- 250

Query: 327 DNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLV---CKVLRHF 383
                  IA+   L   L         D+   E++    +   V  T L+   CK+    
Sbjct: 251 -------IAFSA-LICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMK 302

Query: 384 KSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFST 443
           K+      F      Q G T +V     +   L + G ++  + L+ ++   G++L  ST
Sbjct: 303 KA-----FFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNIST 357

Query: 444 IRLIIDFYGISKKAD--AALK--------AFHDDRTLCGPISKFKLMLLYSSLLRTLTKC 493
              I++  G+ K  +   A+K          H D             + Y++L+    K 
Sbjct: 358 YNTIVN--GLCKAGNILQAVKLMEEMKEAGLHPDT------------ITYTTLMDAYYKT 403

Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
                A  +L EM+  G+ P V TF+ LM    + G  +  ++L   + + G+ P+A  +
Sbjct: 404 GEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATY 463

Query: 554 KVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
             +++ YC            + +    ++PD+ T  +L K   K    KEA
Sbjct: 464 NSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEA 514



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 67/146 (45%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V++  ++  Y   G+L+ V+    E + +    +  +Y+ ++ +  K+GK  E  +  R+
Sbjct: 146 VSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLRE 205

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++  G  P+   YT +I+    LG   +A ++FS +    I   S  +  L+ G  G  +
Sbjct: 206 MMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGK 265

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL 283
             EA  L NEM   G  P      AL
Sbjct: 266 VVEADKLFNEMIKKGFEPDEVTYTAL 291



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 1/181 (0%)

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L  ++ + + +  S+ F  L+   S SG +      +NE  ++       +Y  ++  Y 
Sbjct: 237 LFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYC 296

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           K G+  +A     Q++  G  PN  TYT + + L   G+LD+A E+   +    ++    
Sbjct: 297 KLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNIS 356

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREM 302
            Y  +V G        +A  L+ EM++ G  P       L +   + G +  A E LREM
Sbjct: 357 TYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREM 416

Query: 303 L 303
           L
Sbjct: 417 L 417



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 82/201 (40%), Gaps = 1/201 (0%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + + L  A N   A+ +ME +K       +  T   L     K+    + + L+ ++   
Sbjct: 361 IVNGLCKAGNILQAVKLMEEMKE-AGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDR 419

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
                 V F  LM     SG LE          ++  + +  +YN +M  Y        +
Sbjct: 420 GLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRIS 479

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
            E +R +  +G +P+S TY ++I+       +  A  +   +   R   T+  Y  L++G
Sbjct: 480 TEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKG 539

Query: 252 FVGVERFDEAKSLLNEMRDDG 272
           F   ++  EA+ L  EMR +G
Sbjct: 540 FFKRKKLLEARQLFEEMRREG 560



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 90/219 (41%), Gaps = 27/219 (12%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR---LPFSTIRLIIDFYGISKKA 457
           G   DV +   ++      G ++ V +L+ +++  G++     +S+I L++   G   + 
Sbjct: 140 GCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEG 199

Query: 458 DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
           +  L+              F   ++Y++L+    K      A  +  EM    IVPD   
Sbjct: 200 EKVLREMMKRGV-------FPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIA 252

Query: 518 FSGLMYHFALQGDEKIVQ--KLFSMVRQNGVEPDAYMFKVLIQAYCK--------YLSNS 567
           FS L+    L G  K+V+  KLF+ + + G EPD   +  LI  YCK        +L N 
Sbjct: 253 FSALI--CGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQ 310

Query: 568 ----NLMPDAATKELLKKSLWKEGRRKEA-AAVEERCEK 601
                L P+  T   L   L K G    A   + E C K
Sbjct: 311 MVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRK 349



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/172 (20%), Positives = 77/172 (44%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T  ++  +L KS +  E + ++ ++         V +  L+  +   G+ +     +
Sbjct: 179 NLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLF 238

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           +E   R  +  + +++ ++   + +GK  EA + F ++I +G  P+  TYT +I+    L
Sbjct: 239 SEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKL 298

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           G++  A  + + +  + +      Y  L +G       D A  LL+EM   G
Sbjct: 299 GEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKG 350



 Score = 46.6 bits (109), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 30/141 (21%), Positives = 65/141 (46%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L      SG+L+      +E  ++   L+  +YN +++   K G   +AV+   +
Sbjct: 321 VTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEE 380

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + + G  P++ TYT +++     G++  A E+   +    ++ T   + +L+ G     +
Sbjct: 381 MKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGK 440

Query: 258 FDEAKSLLNEMRDDGKFPGRA 278
            ++ + LL  M + G  P  A
Sbjct: 441 LEDGERLLKWMLEKGIMPNAA 461



 Score = 45.4 bits (106), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 39/207 (18%), Positives = 86/207 (41%), Gaps = 6/207 (2%)

Query: 67  LDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHEL 121
           L P +VT+      L  +   D+A  ++  +        N ST + +   L K+    + 
Sbjct: 316 LTPNVVTYTALADGLCKSGELDTANELLHEM-CRKGLQLNISTYNTIVNGLCKAGNILQA 374

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
             L+ ++  +     ++ +  LM  Y  +G++        E   R    +  ++N++M+ 
Sbjct: 375 VKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNG 434

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
              +GK  +     + ++++G +PN+ TY  +++       +  + E++  +    +   
Sbjct: 435 LCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPD 494

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEM 268
           S  Y IL++G        EA  L  EM
Sbjct: 495 SNTYNILIKGHCKARNMKEAWFLHKEM 521



 Score = 39.3 bits (90), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 52/250 (20%), Positives = 94/250 (37%), Gaps = 8/250 (3%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           L+D F     L +   A    S MEA +  P+         AL   L+ S +  E   L 
Sbjct: 221 LIDGFC---KLGNTQAAYKLFSEMEAREIVPD----SIAFSALICGLSGSGKVVEADKLF 273

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
            ++    F    V +  L+  Y   G+++      N+  Q     +  +Y  +     K+
Sbjct: 274 NEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKS 333

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
           G+   A E   ++  +G   N  TY  ++  L   G +  A+++   +    +   +  Y
Sbjct: 334 GELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITY 393

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLP 304
             L++ +       +A+ LL EM D G  P      V +  +   G ++     L+ ML 
Sbjct: 394 TTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLE 453

Query: 305 DKRIKNVRYY 314
              + N   Y
Sbjct: 454 KGIMPNAATY 463


>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1114

 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 119/553 (21%), Positives = 221/553 (39%), Gaps = 70/553 (12%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           V   L S P+ DS+ S  +++  N N  H   T + +   L    +  E+  +  D+   
Sbjct: 90  VARVLMSFPDTDSSFSYFKSVAGNSNLVHTTETCNYMLEALRVDGKIEEMAYVF-DLMQK 148

Query: 132 KFLNVSVN-FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           + +    N ++ + +  S  G L        + R+   +L+  SYN ++ +  K+    E
Sbjct: 149 RIIKRDTNTYLTIFKCLSVKGGLRQAPFALRKMREFGFVLNAYSYNGLIHLLLKSRFCTE 208

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK---LDSALEVFSALPLMRIKRTSKQYLI 247
           A+E +R++I +G  P+ +TY+ +   +V LGK   ++S + +   +  + +K     + I
Sbjct: 209 AMEVYRRMILDGFRPSLQTYSSL---MVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTI 265

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDK 306
            +       + +EA  +L  M D+G  P      V ++ +     +  A E   +M    
Sbjct: 266 CIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKM---- 321

Query: 307 RIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWS--------P 358
             K  R+  D                R+ Y   L  + D + L +    WS        P
Sbjct: 322 --KTGRHKPD----------------RVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVP 363

Query: 359 EVV--SLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTIL 416
           +VV  ++L DA        +CK   +F            V    G   +++    ++  L
Sbjct: 364 DVVTFTILVDA--------LCKA-GNFGEAFAKLD----VMRDQGILPNLHTYNTLICGL 410

Query: 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK 476
            R   ++    +   + S G++    T  + ID+YG S  + +AL+ F   +T       
Sbjct: 411 LRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTK----GI 466

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
              ++  ++ L +L K  RD +A  +   +   G+VPD  T++ +M  ++  G+     K
Sbjct: 467 APNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIK 526

Query: 537 LFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLW 584
           L S + +N  EPD  +   LI    K             +    L P   T   L   L 
Sbjct: 527 LLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLG 586

Query: 585 KEGRRKEAAAVEE 597
           K G+ +EA  + E
Sbjct: 587 KNGKIQEAIELFE 599



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 35/199 (17%)

Query: 71   IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
            IV   L  A N D AL +   L S+ +FS    T   L   L+KS R +E K L   +S 
Sbjct: 862  IVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMS- 920

Query: 131  SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                                           +Y  R    +   YNI+++ + K G+   
Sbjct: 921  -------------------------------DYGCRP---NCAIYNILINGFGKAGEADA 946

Query: 191  AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
            A   F++++ EG  P+ +TY+V+++ L  +G++D  L  F  L    +      Y +++ 
Sbjct: 947  ACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIIN 1006

Query: 251  GFVGVERFDEAKSLLNEMR 269
            G     R +EA  L NEM+
Sbjct: 1007 GLGKFHRLEEALVLFNEMK 1025



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 122/315 (38%), Gaps = 26/315 (8%)

Query: 153  LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
            +E+    + + +    +    +YN ++  Y K+GK  E  E ++++      PN+ T+ +
Sbjct: 803  IEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNI 862

Query: 213  MIEHLVNLGKLDSALEVFSALPLMR-IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
            +I  LV  G +D AL+++  L   R    T+  Y  L++G     R  EAK L   M D 
Sbjct: 863  VISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDY 922

Query: 272  GKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNS 330
            G  P  A+  + +    + G    A    + M+ +    +++ Y    D           
Sbjct: 923  GCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVG----- 977

Query: 331  GVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW 390
              R+  G+     L    L       +P+VV             L+   L  F   E A 
Sbjct: 978  --RVDEGLHYFRELKESGL-------NPDVVCY----------NLIINGLGKFHRLEEAL 1018

Query: 391  HFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF 450
              F  +    G T D+Y    ++  L   G VE   ++  +++  G+     T   +I  
Sbjct: 1019 VLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRG 1078

Query: 451  YGISKKADAALKAFH 465
            Y +S K + A   + 
Sbjct: 1079 YSLSGKPEHAYAVYQ 1093



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 96/210 (45%), Gaps = 21/210 (10%)

Query: 71  IVTHALRSAPNADSALSIMEALKSN---PNFSHNQSTLHALATVLAKSQRNHELKTLIGD 127
           I+  AL  A N   A + ++ ++     PN       LH   T++    R H L   +  
Sbjct: 370 ILVDALCKAGNFGEAFAKLDVMRDQGILPN-------LHTYNTLICGLLRVHRLDDALEI 422

Query: 128 ISSSKFLNV---SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK 184
             + + L V   +  ++  + +Y  SGD    L T+ + + +    +  + N  +   AK
Sbjct: 423 FDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAK 482

Query: 185 TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQ 244
            G++ EA + F  + D G +P+S TY +M++    +G++D A+++ S +    ++   + 
Sbjct: 483 AGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEM----VENCCEP 538

Query: 245 YLILVEGFVGV----ERFDEAKSLLNEMRD 270
            +I+V   +      +R DEA  +   M++
Sbjct: 539 DVIVVNSLINTLYKADRVDEAWKMFMRMKE 568



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 73/151 (48%), Gaps = 7/151 (4%)

Query: 412  MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTL 470
            ++    + G  +    L  ++  +G+R    T  +++D   +  + D  L  F +   + 
Sbjct: 934  LINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESG 993

Query: 471  CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS-GIVPDVQTFSGLMYHFALQG 529
              P      ++ Y+ ++  L K  R  +A+ +  EM  S GI PD+ T++ L+ +  + G
Sbjct: 994  LNPD-----VVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAG 1048

Query: 530  DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
              +   K+++ +++ G+EP+ + F  LI+ Y
Sbjct: 1049 MVEEAGKIYNEIQRAGLEPNVFTFNALIRGY 1079



 Score = 46.6 bits (109), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 12/122 (9%)

Query: 483  YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
            Y  L+  L+K  R ++A  + E M   G  P+   ++ L+  F   G+      LF  + 
Sbjct: 896  YGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMV 955

Query: 543  QNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRK 590
            + GV PD   + VL+   C            + L  S L PD     L+   L K  R +
Sbjct: 956  KEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLE 1015

Query: 591  EA 592
            EA
Sbjct: 1016 EA 1017



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 91/222 (40%), Gaps = 22/222 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G+   +     ++  L +   +E V  L+ ++ + G++    T  + I   G + K + A
Sbjct: 220 GFRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEA 279

Query: 461 ---LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
              LK   D+   CGP      ++ Y+ L+  L   ++   A  V  +M      PD  T
Sbjct: 280 YEILKRMDDEG--CGPD-----VVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVT 332

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLS 565
           +  L+  F+   D   V + +S + ++G  PD   F +L+ A CK             + 
Sbjct: 333 YITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMR 392

Query: 566 NSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
           +  ++P+  T   L   L +  R  +A  + +  E +   P+
Sbjct: 393 DQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPT 434


>gi|255568239|ref|XP_002525094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535553|gb|EEF37221.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 472

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 93/185 (50%), Gaps = 4/185 (2%)

Query: 387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
           E AW FF WV+   G+ HD +    ML I    G +E ++ +  +++   +++   T   
Sbjct: 2   EKAWIFFNWVSGFQGFKHDQFTYTTMLDIFGEAGRIESMNYVFKQMQEKDIKIDTVTYTS 61

Query: 447 IIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
           ++ +   +   D A+K + + +        +  ++ Y++ ++ L   KR  +A N+ +EM
Sbjct: 62  LMHWLSRNGDVDGAIKIWEEMKEK----GLYLTVVSYTAFMKILFDNKRVKEATNIYKEM 117

Query: 507 IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSN 566
           +  GI P+  T++ LM +  + G  +   ++F  +++ GV+PD  M  +L++  C+    
Sbjct: 118 LECGIPPNCHTYTVLMEYLVVSGKCQEALEIFKKMQEAGVQPDKAMCNILVERCCEAGET 177

Query: 567 SNLMP 571
           + + P
Sbjct: 178 NTMTP 182



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 81/175 (46%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
            F H+Q T   +  +  ++ R   +  +   +        +V + +LM W S +GD++  
Sbjct: 16  GFKHDQFTYTTMLDIFGEAGRIESMNYVFKQMQEKDIKIDTVTYTSLMHWLSRNGDVDGA 75

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           +  W E +++   L+  SY   M +     +  EA   ++++++ G  PN  TYTV++E+
Sbjct: 76  IKIWEEMKEKGLYLTVVSYTAFMKILFDNKRVKEATNIYKEMLECGIPPNCHTYTVLMEY 135

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
           LV  GK   ALE+F  +    ++       ILVE        +    +L  M+++
Sbjct: 136 LVVSGKCQEALEIFKKMQEAGVQPDKAMCNILVERCCEAGETNTMTPILQYMKEN 190


>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Glycine max]
          Length = 631

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 111/544 (20%), Positives = 212/544 (38%), Gaps = 48/544 (8%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           +DP +V   L+        +   +      NF H+ +T  AL   L + +   E+   I 
Sbjct: 83  VDPRLVREILKIDVEVSVKIQFFKWAGKRRNFEHDSTTYMALIRCLDEHRMFGEVWKTIQ 142

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
           D+              +++    +  +   LS + + + R    +  +YN ++ +  + G
Sbjct: 143 DMVKGSCAMAPAELSEIVRILGKAKMVNRALSVFYQVKGRKCRPTASTYNSIILMLMQEG 202

Query: 187 KNFEAVETFRQVIDE-GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
            + +  E + ++  E    P++ TY+ +I     L + DSA+ +F  +    ++ T+K Y
Sbjct: 203 HHEKVHELYNEMCSEVHCFPDTVTYSALISAFAKLNRDDSAIRLFDEMKENGLQPTAKIY 262

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPD 305
             L+  +  V + +EA  L+ EM        RA R  L        I+G  +  R  + D
Sbjct: 263 TTLMGIYFKVGKVEEALGLVKEM--------RARRCLLTVFTYTELIRGLGKSGR--VED 312

Query: 306 KRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSP--EVVSL 363
             +      +DG   D                V +   ++    +N L +     + + L
Sbjct: 313 AYMTYKNMLKDGCKPDV---------------VLMNNLINILGRSNHLRDAIKLFDEMKL 357

Query: 364 LADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVE 423
           L  A  V T   + K L   K+P +    +     + G     +    ++    +   VE
Sbjct: 358 LNCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVE 417

Query: 424 LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLY 483
               L+ ++   G     +    +I+  G++K+ D A + F + +  CG  S      +Y
Sbjct: 418 KALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQELKENCGCSSA----RVY 473

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF--ALQGDEKIVQKLFSMV 541
           + +++   KC R  +AIN+  EM   G  PDV  ++ LM     A + DE     LF  +
Sbjct: 474 AVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAF--SLFRTM 531

Query: 542 RQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRR 589
            +NG  PD     +++    +             + NS + PD  +   +   L + G  
Sbjct: 532 EENGCTPDINSHNIILNGLARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCLSRAGLF 591

Query: 590 KEAA 593
           +EAA
Sbjct: 592 EEAA 595



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 83/210 (39%), Gaps = 7/210 (3%)

Query: 355 EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT 414
           +W P+    L   K     RLV ++L+          FF W   +  + HD      ++ 
Sbjct: 67  KWGPDAEKALEVLKLKVDPRLVREILKIDVEVSVKIQFFKWAGKRRNFEHDSTTYMALIR 126

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGP 473
            L  H     V + I  +      +  + +  I+   G +K  + AL  F+  +   C P
Sbjct: 127 CLDEHRMFGEVWKTIQDMVKGSCAMAPAELSEIVRILGKAKMVNRALSVFYQVKGRKCRP 186

Query: 474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS-GIVPDVQTFSGLMYHFALQGDEK 532
            +       Y+S++  L +         +  EM       PD  T+S L+  FA    + 
Sbjct: 187 TAS-----TYNSIILMLMQEGHHEKVHELYNEMCSEVHCFPDTVTYSALISAFAKLNRDD 241

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
              +LF  +++NG++P A ++  L+  Y K
Sbjct: 242 SAIRLFDEMKENGLQPTAKIYTTLMGIYFK 271



 Score = 47.0 bits (110), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 58/130 (44%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           +++ +   G L   ++ +NE ++        +YN +M+   +  +  EA   FR + + G
Sbjct: 476 MIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTMEENG 535

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  ++ +++  L   G    ALE+F+ +    IK     +  ++        F+EA 
Sbjct: 536 CTPDINSHNIILNGLARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCLSRAGLFEEAA 595

Query: 263 SLLNEMRDDG 272
            L+ EM   G
Sbjct: 596 KLMQEMSSKG 605


>gi|145360025|ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17140
 gi|110737729|dbj|BAF00803.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251496|gb|AEC06590.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 874

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 116/523 (22%), Positives = 215/523 (41%), Gaps = 46/523 (8%)

Query: 60  SLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNH 119
            +L ++++   IV+   R   N DS   ++E ++       +  T ++  + L K  +  
Sbjct: 212 GVLPNKVIYNTIVSSFCREGRNDDSE-KMVEKMREE-GLVPDIVTFNSRISALCKEGKVL 269

Query: 120 ELKTLIGDISSSKFLNV----SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
           +   +  D+   ++L +    S+ +  +++ +   G LE   + +   R+   L S +SY
Sbjct: 270 DASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSY 329

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           NI +    + GK  EA    +Q+ D+G  P+  +Y ++++ L  LG L  A  +   +  
Sbjct: 330 NIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKR 389

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQG 294
             +   +  Y  L+ G+  V + D AKSLL EM  +   P      + L  + +MG I  
Sbjct: 390 NGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISE 449

Query: 295 ANEFLREMLPDKRIKNVRYYEDGSD--------DDEDENDDNNSGVRIAYGVQLKPWLDP 346
           A E LR+M       N + Y  G D        D    + + +  + I  G+++      
Sbjct: 450 AEELLRKM-------NEKGY--GLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVH---GS 497

Query: 347 KALANTLDEWSPEVVSLLADAK-----FVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQ 399
            AL N  + +   V   L +         ++T L  +CK  R F   +  +        Q
Sbjct: 498 AALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGR-FAEAKNLFAEMMGEKLQ 556

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
           P    D  A    +    + G +    R++  +   G      T   +I   GI K    
Sbjct: 557 P----DSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGI-KNQIF 611

Query: 460 ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
            +    D+    G       +  Y++ ++ L + ++  DA N+L+EM+   I P+V +F 
Sbjct: 612 EIHGLMDEMKEKGISPN---ICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFK 668

Query: 520 GLMYHFALQGDEKIVQKLF-SMVRQNGVEPDAY--MFKVLIQA 559
            L+  F    D  + Q++F + V   G +   Y  MF  L+ A
Sbjct: 669 YLIEAFCKVPDFDMAQEVFETAVSICGQKEGLYSLMFNELLAA 711



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 96/224 (42%), Gaps = 27/224 (12%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD---GMRLPFSTIRLIIDFYGISK 455
           + G   D+      ++ L + G V    R+ + +  D   G+  P S        Y +  
Sbjct: 245 EEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSIT------YNLML 298

Query: 456 KADAALKAFHDDRTLCGPISK---FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV 512
           K    +    D +TL   I +      +  Y+  L+ L +  +  +A  VL++M   GI 
Sbjct: 299 KGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIG 358

Query: 513 PDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC----------- 561
           P + +++ LM      G     + +  ++++NGV PDA  +  L+  YC           
Sbjct: 359 PSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSL 418

Query: 562 -KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND 604
            + +  +N +P+A T  +L  SLWK GR  EA   EE   K+N+
Sbjct: 419 LQEMMRNNCLPNAYTCNILLHSLWKMGRISEA---EELLRKMNE 459



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 89/436 (20%), Positives = 166/436 (38%), Gaps = 93/436 (21%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           F  L++ Y  +G  +  L   N       L +   YN ++S + + G+N ++ +   ++ 
Sbjct: 185 FGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMR 244

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL---MRIKR-TSKQYLILVEGFVGV 255
           +EG +P+  T+   I  L   GK+  A  +FS + L   + + R  S  Y ++++GF  V
Sbjct: 245 EEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKV 304

Query: 256 ERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
              ++AK+L   +R++      ++  + L+ +   G    A   L++M  DK I    Y 
Sbjct: 305 GLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQM-TDKGIGPSIY- 362

Query: 315 EDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTR 374
                               +Y + +                    + +L+DAK +    
Sbjct: 363 --------------------SYNILMDGLCK---------------LGMLSDAKTI---- 383

Query: 375 LVCKVLRHFKSPETA-----WHFFCWVA------------YQPGYTHDVYALEKMLTILA 417
            V  + R+   P+        H +C V              +     + Y    +L  L 
Sbjct: 384 -VGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLW 442

Query: 418 RHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALK--------------- 462
           + G +   + L+ K+   G  L   T  +I+D    S + D A++               
Sbjct: 443 KMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGN 502

Query: 463 ------AFHDDRTL---CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP 513
                    DD  +   C P      ++ YS+LL  L K  R  +A N+  EM+   + P
Sbjct: 503 LGNSYIGLVDDSLIENNCLPD-----LITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQP 557

Query: 514 DVQTFSGLMYHFALQG 529
           D   ++  ++HF  QG
Sbjct: 558 DSVAYNIFIHHFCKQG 573



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 107/252 (42%), Gaps = 22/252 (8%)

Query: 375 LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI---LAR---HGHVELVDRL 428
           LV  +L++  +P  AW  F  +   P       +L+   TI   L R   H  ++ +  L
Sbjct: 5   LVKALLKNTNNPRLAWRIFKRIFSSPSEESHGISLDATPTIARILVRAKMHEEIQELHNL 64

Query: 429 IAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLR 488
           I  L S   +   S++  ++  +  S   D A   F   R+   P +K  + L Y+ LL 
Sbjct: 65  I--LSSSIQKTKLSSLLSVVSIFAKSNHIDKAFPQFQLVRSRF-PENKPSVYL-YNLLLE 120

Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548
           +  K +R      + ++M+  GI P   TF+ L+            ++LF  + + G +P
Sbjct: 121 SCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKP 180

Query: 549 DAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVE 596
           + + F +L++ YCK             + +  ++P+      +  S  +EGR  ++  + 
Sbjct: 181 NEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMV 240

Query: 597 ERCEKINDVPSL 608
           E+  +   VP +
Sbjct: 241 EKMREEGLVPDI 252



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 117/559 (20%), Positives = 220/559 (39%), Gaps = 57/559 (10%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHA---LATVLAKSQRNHELKTLIGD 127
           +V   L++  N   A  I + + S+P+   +  +L A   +A +L +++ + E++ L   
Sbjct: 5   LVKALLKNTNNPRLAWRIFKRIFSSPSEESHGISLDATPTIARILVRAKMHEEIQELHNL 64

Query: 128 ISSSKFLNVSVN-FMNLMQWYSTSGDLELVLSTWNEYRQR--AKLLSTESYNIVMSVYAK 184
           I SS      ++  ++++  ++ S  ++     +   R R      S   YN+++    K
Sbjct: 65  ILSSSIQKTKLSSLLSVVSIFAKSNHIDKAFPQFQLVRSRFPENKPSVYLYNLLLESCIK 124

Query: 185 TGKNFEAVE-TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
             +  E V   ++ ++  G  P + T+ ++I  L +   +D+A E+F  +P    K    
Sbjct: 125 E-RRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEF 183

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-----------------RVALERM 286
            + ILV G+      D+   LLN M   G  P + +                    +E+M
Sbjct: 184 TFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKM 243

Query: 287 QEMGFIQGA---NEFLREMLPDKRIKNV-RYYEDGSDDDEDENDDNNSGVRIAYGVQLKP 342
           +E G +      N  +  +  + ++ +  R + D   D+       NS   I Y + LK 
Sbjct: 244 REEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNS---ITYNLMLKG 300

Query: 343 WL------DPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRH--FKSPETAWHFFC 394
           +       D K L  ++ E + ++ SL   +  +W   LV    RH  F   ET      
Sbjct: 301 FCKVGLLEDAKTLFESIRE-NDDLASL--QSYNIWLQGLV----RHGKFIEAETVLKQM- 352

Query: 395 WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS 454
                 G    +Y+   ++  L + G +     ++  ++ +G+     T   ++  Y   
Sbjct: 353 ---TDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSV 409

Query: 455 KKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP 513
            K DAA     +  R  C P +    +LL+S     L K  R  +A  +L +M   G   
Sbjct: 410 GKVDAAKSLLQEMMRNNCLPNAYTCNILLHS-----LWKMGRISEAEELLRKMNEKGYGL 464

Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDA 573
           D  T + ++      G+     ++   +R +G      +    I      L  +N +PD 
Sbjct: 465 DTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDL 524

Query: 574 ATKELLKKSLWKEGRRKEA 592
            T   L   L K GR  EA
Sbjct: 525 ITYSTLLNGLCKAGRFAEA 543



 Score = 43.1 bits (100), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 33/159 (20%), Positives = 68/159 (42%), Gaps = 6/159 (3%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           D+     +L  L + G       L A++  + ++       + I  +    K  +A +  
Sbjct: 523 DLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVL 582

Query: 465 HD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
            D ++  C      K +  Y+SL+  L    + F+   +++EM   GI P++ T++  + 
Sbjct: 583 KDMEKKGC-----HKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQ 637

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           +       +    L   + Q  + P+ + FK LI+A+CK
Sbjct: 638 YLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCK 676



 Score = 40.0 bits (92), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 88/226 (38%), Gaps = 22/226 (9%)

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
           P     VY    +L    +   VE V  L   +   G+     T  L+I     S   DA
Sbjct: 106 PENKPSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDA 165

Query: 460 ALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
           A + F +     C P ++F     +  L+R   K       + +L  M   G++P+   +
Sbjct: 166 ARELFDEMPEKGCKP-NEFT----FGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIY 220

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC---KYLSNSNLM----- 570
           + ++  F  +G     +K+   +R+ G+ PD   F   I A C   K L  S +      
Sbjct: 221 NTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMEL 280

Query: 571 --------PDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
                   P++ T  L+ K   K G  ++A  + E   + +D+ SL
Sbjct: 281 DEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASL 326


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1113

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 100/469 (21%), Positives = 176/469 (37%), Gaps = 48/469 (10%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           F  LM       D E V S   E        +  +Y I + V  + G+  EA    +++ 
Sbjct: 232 FSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRME 291

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           D+G  P+  TYTV+I+ L   GKLD A+E+F  +     K     Y+ +++ F       
Sbjct: 292 DDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLG 351

Query: 260 EAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGS 318
             K   +EM  DG  P      + +  + + G I  A   L  M     + N+  Y    
Sbjct: 352 RVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYN--- 408

Query: 319 DDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWS--PEVVSLLADAKFVWTTRLV 376
                          I+  +++    D   L N ++     P   + +    F   +   
Sbjct: 409 -------------TLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRS 455

Query: 377 CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
            K L  F+  +             G   ++ A    L  LA  G +     +  +L+S+G
Sbjct: 456 DKALETFEKMKIR-----------GIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNG 504

Query: 437 MRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKR 495
           +     T  +++  Y  + + D A++   D     C P      +++ +SL+ TL K  R
Sbjct: 505 LAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPD-----IIVINSLINTLYKAGR 559

Query: 496 DFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV 555
             +A  +   +    + P V T++ L+     +G  +   +LF+ +  NG  P+   F  
Sbjct: 560 VDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNT 619

Query: 556 LIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           ++   CK             ++  N MPD  T   +   L  E R  +A
Sbjct: 620 ILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDA 668



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 111/554 (20%), Positives = 216/554 (38%), Gaps = 85/554 (15%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           V   L S  +   A S   ++   P   H   T + +  +L   +R  ++  ++ ++  +
Sbjct: 94  VMAVLNSILDPTDAFSYFNSVAEMPFVVHTTETCNHMLEILRIHRRVGDM-VVVFNLMQN 152

Query: 132 KFLNVSVN-FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           + +   +N ++ + +     G L      + + R+    L+  SYN ++ +  ++G   E
Sbjct: 153 QIIKRDLNTYLIIFKGLFIRGGLRQTPFAFGKMREAGFHLNAYSYNGLIHLLLQSGLCRE 212

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR---IKRTSKQYLI 247
           A+E +R+++ EG  P+ +T++ +   +V  GK      V S L  M    +K     Y I
Sbjct: 213 ALEMYRRMVLEGLKPSLKTFSAL---MVATGKRRDTETVKSLLEEMESLGLKPNIYTYTI 269

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDK 306
            +       R DEA  ++  M DDG  P      V ++ +   G +  A E   +M    
Sbjct: 270 CIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASS 329

Query: 307 RIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLAD 366
              +   Y    D   D  D          G   + W + +A     D ++P+V++    
Sbjct: 330 HKPDRVTYITMLDKFSDCGD---------LGRVKEFWSEMEA-----DGYAPDVIT---- 371

Query: 367 AKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVD 426
             F      +CK      + + A+H    V  + G   +++    +++ L R   ++   
Sbjct: 372 --FTILVNALCKA----GNIDEAFHLL-DVMRKQGVLPNLHTYNTLISGLLRVNRLDDAL 424

Query: 427 RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSL 486
            L   + + G+     T  L IDFYG S ++D AL+ F                      
Sbjct: 425 DLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETF---------------------- 462

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
                            E+M   GI P++   +  +Y  A  G  +  + +F+ ++ NG+
Sbjct: 463 -----------------EKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGL 505

Query: 547 EPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAA 594
            PD+  + ++++ Y K             +S +   PD      L  +L+K GR  EA  
Sbjct: 506 APDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWK 565

Query: 595 VEERCEKINDVPSL 608
           +  R + +   P++
Sbjct: 566 MFCRLKDMKLAPTV 579



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 100/461 (21%), Positives = 183/461 (39%), Gaps = 48/461 (10%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I    L  A   D A  IM+ ++ +     +  T   L   L  + +  +   L   + +
Sbjct: 269 ICIRVLGRAGRIDEACRIMKRMEDD-GCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKA 327

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           S      V ++ ++  +S  GDL  V   W+E           ++ I+++   K G   E
Sbjct: 328 SSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDE 387

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A      +  +G +PN  TY  +I  L+ + +LD AL++F+ +  + +  T+  Y++ ++
Sbjct: 388 AFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFID 447

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIK 309
            +    R D+A     +M+  G  P   A   +L  + EMG ++ A          K I 
Sbjct: 448 FYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREA----------KVIF 497

Query: 310 NVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAK- 368
           N R   +G   D            + Y + +K +    + A  +D    E + LL+D   
Sbjct: 498 N-RLKSNGLAPDS-----------VTYNMMMKCY----SKAGQVD----EAIELLSDMSE 537

Query: 369 ------FVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHV 422
                  +    L+  + +  +  E AW  FC +         V     ++  L + G V
Sbjct: 538 NQCEPDIIVINSLINTLYKAGRVDE-AWKMFCRLKDMK-LAPTVVTYNTLIAGLGKEGQV 595

Query: 423 ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFKLML 481
           +    L A +  +G      T   I+D    + + D ALK  +   T+ C P      +L
Sbjct: 596 QRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPD-----VL 650

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
            +++++  L   KR  DAI +  +M    + PD  T   L+
Sbjct: 651 TFNTIIHGLVIEKRVSDAIWLFHQMK-KMLTPDCVTLCTLL 690



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 80/168 (47%), Gaps = 3/168 (1%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           S NF  L++ +    + E+  + + E +         +YN+++  + K+GK  E  E + 
Sbjct: 792 SYNF--LIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYE 849

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           Q+I     PN+ T+ ++I +LV    LD AL++F  L       T   Y  L++G +   
Sbjct: 850 QMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSG 909

Query: 257 RFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREML 303
           R +EAK L  EM D G  P  A+  + +    + G +  A E  + M+
Sbjct: 910 RLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMV 957



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 79/175 (45%)

Query: 101  NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
            N  T + +   L KS    +   L  D+ S  F      +  L+     SG LE     +
Sbjct: 859  NTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELF 918

Query: 161  NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
             E        +   YNI+++ + KTG    A E F++++ EG  P+ ++YT ++  L   
Sbjct: 919  EEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEA 978

Query: 221  GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            G++D AL  F  L    +   S  Y ++++G     R +EA +L +EM+  G  P
Sbjct: 979  GRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINP 1033



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 117/577 (20%), Positives = 218/577 (37%), Gaps = 78/577 (13%)

Query: 82   ADSALSIMEALKSN---PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV 138
            +D AL   E +K     PN     ++L++LA +     R  E K +   + S+     SV
Sbjct: 455  SDKALETFEKMKIRGIAPNIVACNASLYSLAEM----GRLREAKVIFNRLKSNGLAPDSV 510

Query: 139  NFMNLMQWYSTSGDLEL---VLSTWNEYRQRAKLLSTES--------------------- 174
             +  +M+ YS +G ++    +LS  +E +    ++   S                     
Sbjct: 511  TYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRL 570

Query: 175  -----------YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
                       YN +++   K G+   A+E F  +   G  PN+ T+  +++ L    ++
Sbjct: 571  KDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEV 630

Query: 224  DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
            D AL++   +  M        +  ++ G V  +R  +A  L ++M+         +   L
Sbjct: 631  DLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQMKKMLTPDCVTLCTLL 690

Query: 284  ERMQEMGFIQGANEFLREMLPDKRIK-NVRYYEDGSDDDEDENDDNNS---GVRIAYGVQ 339
              + + G ++ A +   + +    +  + R++ED       +     +   G R+  G  
Sbjct: 691  PGVVKNGLMEDAFKIAEDFVHRLGVYVDRRFWEDLMGGILTQAGTEKTILFGDRLVCGRV 750

Query: 340  LKPWLDPKALANTLDEWSPEVVSLLADAKFV-WTTRLVCK--------VLRHF---KSPE 387
             K   D   L   +        +L+A + F+ +T  L  K        ++  F    + E
Sbjct: 751  CK---DGSVLMPIIKVLCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDE 807

Query: 388  TAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLI 447
             AW+ F  +    G   DV+    +L    + G +  +  L  ++     +    T  +I
Sbjct: 808  MAWNLFTEMK-NAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNII 866

Query: 448  IDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMI 507
            I     S   D AL  F+D   + G  S       Y  LL  L K  R  +A  + EEM+
Sbjct: 867  IANLVKSNSLDKALDLFYD--LVSGDFSPTPCT--YGPLLDGLLKSGRLEEAKELFEEMV 922

Query: 508  FSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY---- 563
              G  P+   ++ L+  F   GD     +LF  + + G+ PD   +  L+   C+     
Sbjct: 923  DYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVD 982

Query: 564  --------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                    L  + L  D+    L+   L +  R +EA
Sbjct: 983  DALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEA 1019



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 63/326 (19%), Positives = 130/326 (39%), Gaps = 30/326 (9%)

Query: 236  MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQG 294
            + +K T + Y  L+EGF+GV   + A +L  EM++ G  P      + L+   + G I  
Sbjct: 784  LGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINE 843

Query: 295  ANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLD 354
              E   +M+      N                       I + + +   +   +L   LD
Sbjct: 844  LFELYEQMICSSCKPNT----------------------ITHNIIIANLVKSNSLDKALD 881

Query: 355  EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT 414
             +   V    +     +   L+  +L+  +  E    F   V Y     + +Y +  ++ 
Sbjct: 882  LFYDLVSGDFSPTPCTYGP-LLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNI--LIN 938

Query: 415  ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI 474
               + G V     L  ++  +G+R    +   ++     + + D AL  F   +      
Sbjct: 939  GFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQ----T 994

Query: 475  SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
              +   + Y+ ++  L +  R  +A+ + +EM   GI PD+ T++ L+ +  + G  +  
Sbjct: 995  GLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQA 1054

Query: 535  QKLFSMVRQNGVEPDAYMFKVLIQAY 560
             KL+  ++  G+EP+ + +  LI+ Y
Sbjct: 1055 GKLYEELQFIGLEPNVFTYNALIRGY 1080


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 107/536 (19%), Positives = 205/536 (38%), Gaps = 85/536 (15%)

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDL---ELVLSTWNEYRQRAKLLSTESYNIVMSVY 182
           G +  +K +     + N+++ +   GD+   ++VLS   E   +  L +   YN  +   
Sbjct: 231 GSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEM-EKECKPNLFT---YNAFIGGL 286

Query: 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
            +TG   EA+E  + ++++G  P+  TYT++++      +   A  +F ++P   +    
Sbjct: 287 CQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNR 346

Query: 243 KQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQGANEFLRE 301
             Y  L++GF+     +EA  + +EM   G K         +  + + G +  A     E
Sbjct: 347 FTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNE 406

Query: 302 ML-----PDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEW 356
           ML     PD    N+    DG     D          +A   +L   +  + L  +   +
Sbjct: 407 MLMAGLEPDTWTYNLLI--DGYLKSHD----------MAKACELLAEMKARKLTPSPFTY 454

Query: 357 SPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAY-----------------Q 399
           S  +  L   +       ++ +++R+   P    +     AY                  
Sbjct: 455 SVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIA 514

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
            G   D++    ++  L R   VE    L+  +   G++    T    I+ Y  S +   
Sbjct: 515 NGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQV 574

Query: 460 ALKAFHD----------------DRTLCG------PISKFKLML---------LYSSLLR 488
           A + F D                 +  C        +S FK ML          YS+++ 
Sbjct: 575 AERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIH 634

Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548
           +L+K  +  +A+ V  + + +G+VPDV  ++ L+  F  +GD +   +L+  +  NG+ P
Sbjct: 635 SLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINP 694

Query: 549 DAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           +  ++  LI   CK             +   +L+PD  T   +     K G   EA
Sbjct: 695 NIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEA 750



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 103/530 (19%), Positives = 206/530 (38%), Gaps = 58/530 (10%)

Query: 106  HALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQ 165
            + L   L ++++  E K L+ D+        +  +   +  YS SG++++    + +   
Sbjct: 525  NCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLS 584

Query: 166  RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
               + +   Y I++  +   G   EA+ TF+ ++++G IP+ R Y+ +I  L   GK   
Sbjct: 585  SGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKE 644

Query: 226  ALEVFSALPLMRIKRTSKQYLI--LVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVA 282
            A+ VF  L  ++       +L   L+ GF      ++A  L +EM  +G  P   +    
Sbjct: 645  AMGVF--LKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTL 702

Query: 283  LERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKP 342
            +  + ++G +  A E   E+     + +V                      + Y   +  
Sbjct: 703  INGLCKLGEVTKARELFDEIEEKDLVPDV----------------------VTYSTIIDG 740

Query: 343  WLDPKALANTLDEWSPEVVSLLADAKFVWTTRL-VCKVLRHFKSPETAWHFFCWVAYQPG 401
            +     L      +   +   ++   +++   +  C    + +   + +H       Q  
Sbjct: 741  YCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFH-----EAQQK 795

Query: 402  YTHDVYALEKMLTILARHGHV----ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA 457
                + A   ++    +HG V    EL D ++ K  +  +     T  ++ID YG ++  
Sbjct: 796  SVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNI----VTYTILIDAYGKAEMM 851

Query: 458  DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
            + A + F D  T     +     L Y+SLL +  +    F  I++ ++M   GI  D   
Sbjct: 852  EEAEQLFLDMETR----NIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIA 907

Query: 518  FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSN---LMPDAA 574
            +  +   +  +G      KL +     G++ +  +F  LI   CK    S    L+ +  
Sbjct: 908  YGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMG 967

Query: 575  TKEL---------LKKSLWKEGRRKEAAAVEERCEKINDVP-SLALRGHI 614
             +EL         L    +K G   EA+ V    +++  VP SL+L   I
Sbjct: 968  KEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVPTSLSLTDSI 1017



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 108/485 (22%), Positives = 189/485 (38%), Gaps = 73/485 (15%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y  V+  + K G   +      ++  E   PN  TY   I  L   G +D ALEV   +
Sbjct: 244 TYTNVIKAHCKVGDVIKGKMVLSEMEKE-CKPNLFTYNAFIGGLCQTGAVDEALEVKKLM 302

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
               +      Y +LV+GF   +R  EAK +   M   G  P R    AL      GFI+
Sbjct: 303 MEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALID----GFIK 358

Query: 294 GAN--EFLR---EMLPDKRIKNVRYYED--GSDDDEDENDDNNSGVRIAYGVQLKPWLDP 346
             N  E LR   EM+      NV  Y    G      E     S     +   L   L+P
Sbjct: 359 EGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMS----LFNEMLMAGLEP 414

Query: 347 KALANTLDEWSPEVVSLLADAKFVWTTRLV--CKVLRHFKSPETAWHFFCWVAYQPGYTH 404
                  D W+    +LL D  ++ +  +   C++L   K+ +     F +     G  H
Sbjct: 415 -------DTWT---YNLLIDG-YLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCH 463

Query: 405 --DVYALEKMLTILARHG---HVELVDRLI-AKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
             D+    ++L  + R+G   +V +   LI A ++     +    ++++I        A+
Sbjct: 464 SSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMI--------AN 515

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
             L                  +  Y+ L+  L + K+  +A  +L +M   GI P+  T+
Sbjct: 516 GVLPD----------------LFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTY 559

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSN 566
              +  ++  G+ ++ ++ F  +  +G+ P+  ++ +LI+ +C            K +  
Sbjct: 560 GAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLE 619

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWA--VSSADLTR 624
             L+PD      +  SL K G+ KEA  V  +  K   VP + L   + +      D+ +
Sbjct: 620 KGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEK 679

Query: 625 VHSIY 629
              +Y
Sbjct: 680 ASQLY 684



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 103/505 (20%), Positives = 202/505 (40%), Gaps = 42/505 (8%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
            D AL + + L        +  T   L     K +R+ E K +   + SS        + 
Sbjct: 292 VDEALEV-KKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYT 350

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            L+  +   G++E  L   +E   R   L+  +YN ++   AK G+  +A+  F +++  
Sbjct: 351 ALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMA 410

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G  P++ TY ++I+  +    +  A E+ + +   ++  +   Y +L+ G        +A
Sbjct: 411 GLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKA 470

Query: 262 KSLLNEMRDDGKFPGRAMRVALER--MQEMGFIQGANEFLREM-----LPDKRIKNVRYY 314
             +L++M  +G  P   M   L +  +QE  + + A E L+ M     LPD    N    
Sbjct: 471 NEVLDQMIRNGVKPNVFMYGTLIKAYVQESRY-EMAIELLKIMIANGVLPDLFCYNCLII 529

Query: 315 EDGSDDDEDEN-----DDNNSGVRI---AYGVQLKPWLDPKALANTLDEWSPEVVSLLAD 366
                   +E      D    G++     YG  +  +     +      +   + S +  
Sbjct: 530 GLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVP 589

Query: 367 AKFVWTTRLV--CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVEL 424
              ++T  +   C V    ++  T   F C +  + G   D+ A   ++  L+++G  + 
Sbjct: 590 NNVIYTILIKGHCDVGNTVEALST---FKCML--EKGLIPDIRAYSAIIHSLSKNGKTK- 643

Query: 425 VDRLIAKLRSDGMRLPFSTIRLIIDFY-------GISKKADAALKAFHDDRTLCGPISKF 477
                    + G+ L F    ++ D +       G  K+ D    +   D  L   I+  
Sbjct: 644 --------EAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPN 695

Query: 478 KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL 537
             +++Y++L+  L K      A  + +E+    +VPDV T+S ++  +   G+     KL
Sbjct: 696 --IVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKL 753

Query: 538 FSMVRQNGVEPDAYMFKVLIQAYCK 562
           F  +   G+ PD Y++ +LI    K
Sbjct: 754 FDEMISKGISPDGYIYCILIDGCGK 778



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 77/175 (44%)

Query: 101  NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
            N  T   L     K++   E + L  D+ +   +  ++ + +L+  Y+  G+   ++S +
Sbjct: 834  NIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLF 893

Query: 161  NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
             +   R       +Y ++ S Y K GK+ EA++   + + EG       +  +I HL   
Sbjct: 894  KDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKE 953

Query: 221  GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             ++ + LE+ S +    +  +SK    L+ GF      DEA  +L  M+  G  P
Sbjct: 954  KQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVP 1008



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 90/215 (41%), Gaps = 7/215 (3%)

Query: 105 LHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN-----FMNLMQWYSTSGDLELVLST 159
           + A + ++    +N + K  +G     KFL   V      + +L+  +   GD+E     
Sbjct: 626 IRAYSAIIHSLSKNGKTKEAMGVFL--KFLKTGVVPDVFLYNSLISGFCKEGDIEKASQL 683

Query: 160 WNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219
           ++E        +   YN +++   K G+  +A E F ++ ++  +P+  TY+ +I+    
Sbjct: 684 YDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCK 743

Query: 220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM 279
            G L  A ++F  +    I      Y IL++G       ++A SL +E +        A 
Sbjct: 744 SGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAF 803

Query: 280 RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
              ++   + G +  A E   +M+  K   N+  Y
Sbjct: 804 NSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTY 838



 Score = 38.9 bits (89), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 99/258 (38%), Gaps = 42/258 (16%)

Query: 374 RLVCKVLRHFKSPETA--WHFFCWVAYQ---PGYTHDVYALEKMLTI-LARHGHVELVDR 427
            +VC VL+  +  ++    +FF W + +   P Y H       +L I L   G +   D 
Sbjct: 86  EIVCSVLQKSEIDDSVRLQNFFYWSSSKMSTPQYLHSY----SILAIRLCNSGLIHQADN 141

Query: 428 LIAKL---RSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK-------- 476
           ++ KL   R   + +  S +R   +F G +         F D   + G +++        
Sbjct: 142 MLEKLLQTRKPPLEILDSLVRCYREFGGSNL---TVFDIFIDKFRVLGFLNEASSVFIAS 198

Query: 477 -----FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
                F  ++  ++L+R L K         V   M+ + IVPDV T++ ++      GD 
Sbjct: 199 ISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGD- 257

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELL 579
            I  K+     +   +P+ + +   I   C            K +    L PD  T  LL
Sbjct: 258 VIKGKMVLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLL 317

Query: 580 KKSLWKEGRRKEAAAVEE 597
                K+ R KEA  + E
Sbjct: 318 VDGFCKQKRSKEAKLIFE 335


>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 98/433 (22%), Positives = 170/433 (39%), Gaps = 43/433 (9%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN V+S + K  +   A +   ++   G  P+  TY ++I +    G+LD AL V   L
Sbjct: 148 AYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMDQL 207

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
                K T   Y IL+E  +     DEA  LL+EM   G  P R    V +  M + G +
Sbjct: 208 LKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGML 267

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
             A EFL  +  +  +  V  Y     D  +E        +  YG +L   +  K     
Sbjct: 268 DRAFEFLSRISKNGCVAGVSTYNILLRDLLNEG-------KWEYGEKLMSDMLVKGCEPN 320

Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
              +S  + +L  D K +   + V KV++                 +     D Y+ + +
Sbjct: 321 PITYSTLITALCRDGK-IDEAKNVLKVMK-----------------EKALAPDGYSYDPL 362

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
           ++ L R G V+L    +  + S G      +   I+     +  AD AL  F     +  
Sbjct: 363 ISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGC 422

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG-DE 531
           P +      L+ +L  +  K +    A+ ++ EM+ +GI PD  T++ L+      G  +
Sbjct: 423 PPNAGSYNTLFGALWSSGDKIR----ALGMILEMLSNGIDPDEITYNSLISCLCRDGLVD 478

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELL 579
           + ++ L  M      +P    +  ++   CK             + N   +P+  T  LL
Sbjct: 479 QAIELLVDMFESEKCQPTVISYNTVLLGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTLL 538

Query: 580 KKSLWKEGRRKEA 592
            + +   G R +A
Sbjct: 539 IQGIGFAGWRYDA 551



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/178 (20%), Positives = 77/178 (43%), Gaps = 1/178 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + +  L++   T G ++  +   +E   R       +YN+V++   K G    A E   +
Sbjct: 217 ITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSR 276

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G +    TY +++  L+N GK +   ++ S + +   +     Y  L+       +
Sbjct: 277 ISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGK 336

Query: 258 FDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
            DEAK++L  M++    P G +    +  +   G +  A EFL +M+    + ++  Y
Sbjct: 337 IDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSY 394



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 18/158 (11%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ LLR L    +      ++ +M+  G  P+  T+S L+      G     + +  +++
Sbjct: 289 YNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMK 348

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
           +  + PD Y +  LI A C+             + +   +PD  +   +  SL K G   
Sbjct: 349 EKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNAD 408

Query: 591 EAAAVEERCEKINDVPSLA----LRGHIWAVSSADLTR 624
           EA  + E+  ++   P+      L G +W  SS D  R
Sbjct: 409 EALNIFEKLGEVGCPPNAGSYNTLFGALW--SSGDKIR 444



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 39/210 (18%), Positives = 88/210 (41%), Gaps = 4/210 (1%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A ++++ +K     + +  +   L + L +  +       + D+ S   L   +++ +
Sbjct: 338 DEAKNVLKVMKEKA-LAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNS 396

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           ++     +G+ +  L+ + +  +     +  SYN +      +G    A+    +++  G
Sbjct: 397 ILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNG 456

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVF-SALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
             P+  TY  +I  L   G +D A+E+        + + T   Y  ++ G   V+R  +A
Sbjct: 457 IDPDEITYNSLISCLCRDGLVDQAIELLVDMFESEKCQPTVISYNTVLLGLCKVQRIIDA 516

Query: 262 KSLLNEMRDDGKFPGRAMRVALERMQEMGF 291
             +L  M ++G  P       L  +Q +GF
Sbjct: 517 IEVLAAMVNEGCLPNETTYTLL--IQGIGF 544



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 71/157 (45%), Gaps = 8/157 (5%)

Query: 81  NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNF 140
           NAD AL+I E L        N  + + L   L  S        +I ++ S+      + +
Sbjct: 406 NADEALNIFEKL-GEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITY 464

Query: 141 MNLMQWYSTSG----DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
            +L+      G     +EL++  +   + +  ++S   YN V+    K  +  +A+E   
Sbjct: 465 NSLISCLCRDGLVDQAIELLVDMFESEKCQPTVIS---YNTVLLGLCKVQRIIDAIEVLA 521

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
            +++EG +PN  TYT++I+ +   G    A+E+ + L
Sbjct: 522 AMVNEGCLPNETTYTLLIQGIGFAGWRYDAMELANLL 558


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 124/593 (20%), Positives = 245/593 (41%), Gaps = 53/593 (8%)

Query: 67  LDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHEL 121
           L+P IV +         A + D A      LK++     +  +  ++  VL K+ R  E 
Sbjct: 242 LEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAH-GLRPDDVSYTSMVWVLCKAGRLGEA 300

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
           + L G + + + +  +  +  ++  Y ++   +         R+R  + S  S+N +++ 
Sbjct: 301 EELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTC 360

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
             K  K  EA+  F  V+ + A PN  TY ++I+ L   G+++ A ++   + L  +   
Sbjct: 361 LGKKRKVDEALTLF-DVMKKDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPN 419

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLR 300
                I+V+      + +EA  +     + G  P      +L + + + G I  A     
Sbjct: 420 LLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFE 479

Query: 301 EMLPDKR----------IKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALA 350
           +ML              I+N   +    D  +   +    G R    + L  ++D    A
Sbjct: 480 KMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTL-LNTYMDCVFKA 538

Query: 351 NTLDEWSPEVVSLLADAK---FVWTTR----LVCKVLRHFKSPETAWHFFCWVAYQPGYT 403
             +++      ++  D K   F+   R    L+  + +  ++ ET+  F      Q G+ 
Sbjct: 539 GEVEKGR----AIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIF--QAMSQQGFA 592

Query: 404 HDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKA 463
            D  A   ++  L + G V+    ++ +++   +    +T   I+D      + D A   
Sbjct: 593 LDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYML 652

Query: 464 FHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
           F + ++    ++    ++LYSSL+    K  R  +A  +LEEM+  G+ P+V T++ LM 
Sbjct: 653 FEEAKSKGIELN----VILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMD 708

Query: 524 HFALQGDEKIVQKL--FSMVRQNGVEPDAYMFKVLIQAYC---KY---------LSNSNL 569
             AL   E+I + L  F  +++    P+ Y + +LI   C   KY         +    L
Sbjct: 709 --ALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGL 766

Query: 570 MPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP-SLALRGHIWAVSSAD 621
           +P+  T   +   L K G   +A ++ ER +    +P S +    I  +S+A+
Sbjct: 767 IPNVVTYTTMISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGMSNAN 819



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 87/200 (43%), Gaps = 6/200 (3%)

Query: 77  RSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNV 136
           R   +A   +  M  LK  P FS     + ALA    + +R  EL   + D+       V
Sbjct: 155 RRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEA-RQPERALELLRQMQDVG----YEV 209

Query: 137 SVN-FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF 195
           SV  F  L++  +  G +E  L+  +E +          YN+ +  + K G    A + F
Sbjct: 210 SVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFF 269

Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
            ++   G  P+  +YT M+  L   G+L  A E+F  +   R    +  Y  ++ G+   
Sbjct: 270 HELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSA 329

Query: 256 ERFDEAKSLLNEMRDDGKFP 275
           ERFD+A  LL  +R+ G  P
Sbjct: 330 ERFDDAYKLLERLRERGCIP 349



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 103/244 (42%), Gaps = 42/244 (17%)

Query: 356 WSPE----VVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFF--------------CWVA 397
           W+P+    V S L+ A       +V  VLR  K+P  A  FF               + A
Sbjct: 55  WTPDLAGAVSSTLSSAP-APAHDVVVYVLRSLKNPSLAAPFFLLASASSSQPLPPDAYNA 113

Query: 398 YQPGYTHDVYALEKML-------------------TILARHGHVELVDRLIAKLRSDGMR 438
             P  +HD+ ALEK+L                     L R   +E   R+I  +R    R
Sbjct: 114 VLPFLSHDLAALEKVLEEMSHLGYGLPNPACAALVATLVRSRRLEDAFRVIGAMRHLKFR 173

Query: 439 LPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD 498
            PFS   ++I     +++ + AL+     + +   +S    + L+++L+R L +  +   
Sbjct: 174 PPFSAYTVLIGALAEARQPERALELLRQMQDVGYEVS----VPLFTTLVRALAREGQMEP 229

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A+ +++E+  S + PD+  ++  +  F   G   +  K F  ++ +G+ PD   +  ++ 
Sbjct: 230 ALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVW 289

Query: 559 AYCK 562
             CK
Sbjct: 290 VLCK 293



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 47/102 (46%)

Query: 160 WNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219
           W E +++  + +  +Y  ++S  AK G   +A   F +    G IP+S ++  +IE + N
Sbjct: 758 WQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGMSN 817

Query: 220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
             +   A +VF    L   +   K  + L++     E  ++A
Sbjct: 818 ANRPMEAYQVFEETRLRGCRLNVKTCISLLDALNKTECLEQA 859


>gi|357521641|ref|XP_003631109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525131|gb|AET05585.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 687

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 97/465 (20%), Positives = 194/465 (41%), Gaps = 35/465 (7%)

Query: 68  DPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD 127
           D + V   L+S P  + A            F H+Q T   +  +  ++ R   +K +   
Sbjct: 199 DSYTVNQVLKSHPPMEKAWLFFNWASRLKGFKHDQFTYTTMLDIFGEAGRISSMKHVFNQ 258

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE-SYNIVMSVYAKTG 186
           +        SV + ++M W STSG+++  ++ W+E + +     T  SY   + +     
Sbjct: 259 MHEKGIKIDSVTYTSMMHWLSTSGNVDEAIALWDEMKSKGCCYPTVVSYTAFIKILFDNH 318

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
           +  EA   +++++  G +PN  TYTV+++HL+  GK   ALE+F  +    ++       
Sbjct: 319 RVKEATAIYKEMLHNGCVPNCYTYTVLMDHLIASGKCKEALEIFQKMQEAGVEPDKAACN 378

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDK 306
           IL++    V        +L  M+++ +   R  RV ++ M+ +     ++  LR++ P  
Sbjct: 379 ILIDKCSKVCGTVFMTKILQYMKEN-RLVLR-YRVYVKAMEALKIAGESDTLLRQVNP-- 434

Query: 307 RIKNVRYYEDGS--DDDEDEND---DNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVV 361
                 +Y D S  +   D N    D++S +     + L    +  A+ + +     + +
Sbjct: 435 -----HFYLDSSFKEKAHDRNTVIADSSSNIDKELLLVLLRNRNVVAIDHLIQGMMDKKI 489

Query: 362 SLLADAKFVWTTRLV-CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHG 420
           S+  D K + T   V C   R    P+ A   F + +   G + +      ++ +L R  
Sbjct: 490 SV--DNKVISTIIEVNCNCCR----PDGALLAFNY-SVTMGISIERTGYLSLVGLLNRSN 542

Query: 421 HVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH---DDRTLCGPISKF 477
               +  ++ ++   G  L      L+I   G +++   ALK F+   D+          
Sbjct: 543 MFSKLVEIVGEMTRAGHSLGIYLASLLIYRLGCARQLSIALKIFNLLPDNH--------- 593

Query: 478 KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
           K +  Y++L+      +R   A+ + + M   G  P   TF+ L+
Sbjct: 594 KCVATYTALISIYFSARRVNKALEIYKIMCQKGNCPTSGTFNILV 638



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 88/189 (46%), Gaps = 7/189 (3%)

Query: 371 WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIA 430
           W +  V +VL+     E AW FF W +   G+ HD +    ML I    G +  +  +  
Sbjct: 198 WDSYTVNQVLKSHPPMEKAWLFFNWASRLKGFKHDQFTYTTMLDIFGEAGRISSMKHVFN 257

Query: 431 KLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD--DRTLCGPISKFKLMLLYSSLLR 488
           ++   G+++   T   ++ +   S   D A+  + +   +  C P      ++ Y++ ++
Sbjct: 258 QMHEKGIKIDSVTYTSMMHWLSTSGNVDEAIALWDEMKSKGCCYPT-----VVSYTAFIK 312

Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548
            L    R  +A  + +EM+ +G VP+  T++ LM H    G  K   ++F  +++ GVEP
Sbjct: 313 ILFDNHRVKEATAIYKEMLHNGCVPNCYTYTVLMDHLIASGKCKEALEIFQKMQEAGVEP 372

Query: 549 DAYMFKVLI 557
           D     +LI
Sbjct: 373 DKAACNILI 381


>gi|356512664|ref|XP_003525037.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74750-like [Glycine max]
          Length = 873

 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 114/270 (42%), Gaps = 18/270 (6%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
           W P     L +  F        ++L+  + P  A  FF W+  QPG+ HD +    M+ I
Sbjct: 327 WGPTAEKALYNLNFSMDAYQANQILKQLQDPSVALGFFDWLRRQPGFRHDGHTYTTMVGI 386

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPI 474
           L R    + + +L+ ++  DG +    T   +I  YG +     AL  F++ + + C P 
Sbjct: 387 LGRARRFDSISKLLEQMVKDGCQPNVVTYNRLIHCYGCANYLKEALNVFNEMQEVGCEPD 446

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
                 + Y +L+    K      A+++ + M  +G+ PD  T+S ++      G+    
Sbjct: 447 R-----VTYCTLIDIHAKAGFIDVAMSMYKRMQEAGLSPDTFTYSVIINCLGKAGNLAAA 501

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKS 582
             LF  + ++G  P+   + ++I    K             + N+   PD  T  ++ ++
Sbjct: 502 HWLFCEMVEHGCVPNLVTYNIMIALQAKARNYEMALKLYHDMQNAGFQPDKVTYSIVMEA 561

Query: 583 LWKEGRRKEAAAVEERCEKINDVPSLALRG 612
           L   G  +EA +V    ++ N VP   + G
Sbjct: 562 LGHCGYLEEAESVFVEMQQKNWVPDEPVYG 591



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/248 (19%), Positives = 108/248 (43%), Gaps = 6/248 (2%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           +D +     L+   +   AL   + L+  P F H+  T   +  +L +++R   +  L+ 
Sbjct: 342 MDAYQANQILKQLQDPSVALGFFDWLRRQPGFRHDGHTYTTMVGILGRARRFDSISKLLE 401

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
            +         V +  L+  Y  +  L+  L+ +NE ++        +Y  ++ ++AK G
Sbjct: 402 QMVKDGCQPNVVTYNRLIHCYGCANYLKEALNVFNEMQEVGCEPDRVTYCTLIDIHAKAG 461

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
               A+  ++++ + G  P++ TY+V+I  L   G L +A  +F  +           Y 
Sbjct: 462 FIDVAMSMYKRMQEAGLSPDTFTYSVIINCLGKAGNLAAAHWLFCEMVEHGCVPNLVTYN 521

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM--- 302
           I++        ++ A  L ++M++ G  P +    + +E +   G+++ A     EM   
Sbjct: 522 IMIALQAKARNYEMALKLYHDMQNAGFQPDKVTYSIVMEALGHCGYLEEAESVFVEMQQK 581

Query: 303 --LPDKRI 308
             +PD+ +
Sbjct: 582 NWVPDEPV 589



 Score = 42.7 bits (99), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 29/140 (20%), Positives = 67/140 (47%), Gaps = 1/140 (0%)

Query: 111 VLAKSQRNHELK-TLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKL 169
            L    RN+E+   L  D+ ++ F    V +  +M+     G LE   S + E +Q+  +
Sbjct: 525 ALQAKARNYEMALKLYHDMQNAGFQPDKVTYSIVMEALGHCGYLEEAESVFVEMQQKNWV 584

Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
                Y +++ ++ K G   +A E ++ +++ G +PN  T   ++   + L +L  A  +
Sbjct: 585 PDEPVYGLLVDLWGKAGNVEKASEWYQAMLNAGLLPNVPTCNSLLSAFLRLHRLPDAYNL 644

Query: 230 FSALPLMRIKRTSKQYLILV 249
             ++  + ++ + + Y +L+
Sbjct: 645 VQSMVALGLRPSLQTYTLLL 664


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 113/477 (23%), Positives = 181/477 (37%), Gaps = 116/477 (24%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAI-PNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           +YN+++S Y K G+   A+     V+D  ++ P+  TY  ++  L + GKL  A+EV   
Sbjct: 174 TYNVMISGYCKAGEINNAL----SVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDR 229

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGF 291
           +           Y IL+E         +A  LL+EMRD G  P      V +  + + G 
Sbjct: 230 MLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGR 289

Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKP------WLD 345
           +  A +FL +M       NV                      I + + L+       W+D
Sbjct: 290 LDEAIKFLNDMPSSGCQPNV----------------------ITHNIILRSMCSTGRWMD 327

Query: 346 P-KALANTLDE-WSPEVVSLLADAKFVWTTRLVCKVL-------RHFKSPETA-----WH 391
             K LA+ L + +SP VV+      F+    L+ + +       +H   P +       H
Sbjct: 328 AEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLH 387

Query: 392 FFC-------WVAY-----QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
            FC        + Y       G   D+     MLT L + G VE    ++ +L S G   
Sbjct: 388 GFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKG--- 444

Query: 440 PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDA 499
                                          C P+     ++ Y++++  L K  +   A
Sbjct: 445 -------------------------------CSPV-----LITYNTVIDGLAKAGKTGKA 468

Query: 500 INVLEEMIFSGIVPDVQTFSGLMYHFALQG--DEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           I +L+EM    + PD  T+S L+   + +G  DE I  K F    + GV P+A  F  ++
Sbjct: 469 IKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAI--KFFHEFERMGVRPNAVTFNSIM 526

Query: 558 QAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA-AAVEERCEK 601
              CK            Y+ N    P   +  +L + L  EG  KEA   + E C K
Sbjct: 527 LGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELLNELCNK 583



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 9/121 (7%)

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           LR L +     +    LE M++ G VPD+   + L+  F   G  +   K+  ++  +G 
Sbjct: 109 LRQLVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGA 168

Query: 547 EPDAYMFKVLIQAYCK---------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
            PD   + V+I  YCK          L   ++ PD  T   + +SL   G+ K+A  V +
Sbjct: 169 VPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLD 228

Query: 598 R 598
           R
Sbjct: 229 R 229



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 90/216 (41%), Gaps = 12/216 (5%)

Query: 62  LNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSN---PNFSHNQSTLHALATVLA 113
           + DR   P +VT+      +      D A+  +  + S+   PN   +   L ++ +   
Sbjct: 265 MRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCS--- 321

Query: 114 KSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE 173
            + R  + + L+ D+    F    V F  L+ +    G L   +    +  +     ++ 
Sbjct: 322 -TGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSL 380

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SYN ++  + K  K   A+E   +++  G  P+  TY  M+  L   GK++ A+E+ + L
Sbjct: 381 SYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQL 440

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
                      Y  +++G     +  +A  LL+EMR
Sbjct: 441 SSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMR 476



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 84/199 (42%), Gaps = 1/199 (0%)

Query: 74  HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKF 133
           H        D A+  +E + S   +  +  T + + T L K  +  +   ++  +SS   
Sbjct: 387 HGFCKEKKMDRAIEYLERMVSRGCYP-DIVTYNTMLTALCKDGKVEDAVEILNQLSSKGC 445

Query: 134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE 193
             V + +  ++   + +G     +   +E R +     T +Y+ ++   ++ GK  EA++
Sbjct: 446 SPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIK 505

Query: 194 TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
            F +    G  PN+ T+  ++  L    + D A++    +     K T   Y IL+EG  
Sbjct: 506 FFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLA 565

Query: 254 GVERFDEAKSLLNEMRDDG 272
                 EA  LLNE+ + G
Sbjct: 566 YEGMAKEALELLNELCNKG 584



 Score = 46.6 bits (109), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 74/411 (18%), Positives = 162/411 (39%), Gaps = 32/411 (7%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  +++    SG L+  +   +   QR       +Y I++    +     +A++   +
Sbjct: 205 VTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDE 264

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + D G  P+  TY V++  +   G+LD A++  + +P    +     + I++       R
Sbjct: 265 MRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGR 324

Query: 258 FDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
           + +A+ LL +M   G  P      + +  +   G +  A + L +M       N      
Sbjct: 325 WMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPN------ 378

Query: 317 GSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLV 376
                            ++Y   L  +   K +   + E+   +VS       V    ++
Sbjct: 379 ----------------SLSYNPLLHGFCKEKKMDRAI-EYLERMVSRGCYPDIVTYNTML 421

Query: 377 CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
             + +  K  E A      ++ + G +  +     ++  LA+ G      +L+ ++R+  
Sbjct: 422 TALCKDGKV-EDAVEILNQLSSK-GCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKD 479

Query: 437 MRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKR 495
           ++    T   ++       K D A+K FH+ +R    P +     + ++S++  L K ++
Sbjct: 480 LKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNA-----VTFNSIMLGLCKTRQ 534

Query: 496 DFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
              AI+ L  MI  G  P   +++ L+   A +G  K   +L + +   G+
Sbjct: 535 TDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELLNELCNKGL 585



 Score = 46.6 bits (109), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 21/147 (14%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y+ ++    K     +A++VL+ M  S   PDV T++ ++      G  K   ++  
Sbjct: 172 VITYNVMISGYCKAGEINNALSVLDRMSVS---PDVVTYNTILRSLCDSGKLKQAMEVLD 228

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEG 587
            + Q    PD   + +LI+A C+             + +    PD  T  +L   + KEG
Sbjct: 229 RMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEG 288

Query: 588 RRKEAAAVEERCEKINDVPSLALRGHI 614
           R  EA         +ND+PS   + ++
Sbjct: 289 RLDEAIKF------LNDMPSSGCQPNV 309


>gi|255540881|ref|XP_002511505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550620|gb|EEF52107.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 876

 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 113/271 (41%), Gaps = 20/271 (7%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
           W P     LA+  +        +VL+  +    A +FF W+  QPG+ HD +    M+ I
Sbjct: 330 WGPAAEEALANLNYSMDPYQANQVLKQLQDHTVALNFFYWLKRQPGFNHDGHTYTTMVGI 389

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPI 474
           L R      +++L+ ++  DG +    T   +I  YG +   + A+  F++  R  C P 
Sbjct: 390 LGRAKQFGAINKLLDQMVKDGCQPNVVTYNRLIHSYGRANYLNDAVDVFNEMQRVGCEPD 449

Query: 475 SKFKLMLLYSSLLRTLTKCK-RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
                 + Y +L+    K    DF A+ + + M  +G+ PD  T+S ++      G    
Sbjct: 450 R-----VTYCTLIDIHAKAGFLDF-ALEMYQRMQAAGLSPDTFTYSVIINCLGKAGHLAA 503

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKK 581
             KLF  + + G  P+   + ++I    K             + ++   PD  T  ++ +
Sbjct: 504 AHKLFCEMVEQGCVPNLVTYNIMIALQAKARNYQSALKLYRDMQSAGFQPDKVTYSIVME 563

Query: 582 SLWKEGRRKEAAAVEERCEKINDVPSLALRG 612
            L   G   EA AV    ++ N VP   + G
Sbjct: 564 VLGHCGYLDEAEAVFSEMKRKNWVPDEPVYG 594



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/248 (20%), Positives = 105/248 (42%), Gaps = 6/248 (2%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           +DP+     L+   +   AL+    LK  P F+H+  T   +  +L ++++   +  L+ 
Sbjct: 345 MDPYQANQVLKQLQDHTVALNFFYWLKRQPGFNHDGHTYTTMVGILGRAKQFGAINKLLD 404

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
            +         V +  L+  Y  +  L   +  +NE ++        +Y  ++ ++AK G
Sbjct: 405 QMVKDGCQPNVVTYNRLIHSYGRANYLNDAVDVFNEMQRVGCEPDRVTYCTLIDIHAKAG 464

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
               A+E ++++   G  P++ TY+V+I  L   G L +A ++F  +           Y 
Sbjct: 465 FLDFALEMYQRMQAAGLSPDTFTYSVIINCLGKAGHLAAAHKLFCEMVEQGCVPNLVTYN 524

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM--- 302
           I++        +  A  L  +M+  G  P +    + +E +   G++  A     EM   
Sbjct: 525 IMIALQAKARNYQSALKLYRDMQSAGFQPDKVTYSIVMEVLGHCGYLDEAEAVFSEMKRK 584

Query: 303 --LPDKRI 308
             +PD+ +
Sbjct: 585 NWVPDEPV 592


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 100/465 (21%), Positives = 180/465 (38%), Gaps = 111/465 (23%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAI-PNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           SYN +++ Y  TG+    ++  R+++    + P++ TY  +I  L   G+ D+AL V   
Sbjct: 122 SYNAMVAGYCVTGQ----LDNARRLVAAMPMEPDTYTYNTLIRGLCGRGRTDNALAVLDD 177

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGF 291
           +           Y IL+E       + +A  LL+EMRD G  P      V +  + + G 
Sbjct: 178 MLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGR 237

Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKP------WLD 345
           +  A EFL+  LP            G + +            ++Y + LK       W D
Sbjct: 238 VDDAMEFLKS-LPSY----------GCEPNT-----------VSYNIVLKGLCTAERWED 275

Query: 346 PKALANTLDEWS--PEVVSLLADAKFVWTTRLV-------CKVLRHFKSPET-----AWH 391
            + L   +      P VV+      F+    LV        ++ ++  +P +       H
Sbjct: 276 AEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILH 335

Query: 392 FFC------------WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
            FC             +    G   D+ +   +LT L R G V+    L+ +L+  G   
Sbjct: 336 AFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKG--- 392

Query: 440 PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDA 499
                                          C P+     ++ Y++++  LTK  +  +A
Sbjct: 393 -------------------------------CTPV-----LISYNTVIDGLTKAGKTEEA 416

Query: 500 INVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
           + +L EM+  G+ PD+ T+S +      +G  +   K F  V+  G+ P+  ++  ++  
Sbjct: 417 LELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLG 476

Query: 560 YCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
            CK            Y+ ++  MP+ +T  +L + L  EG  KEA
Sbjct: 477 LCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAYEGLVKEA 521



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 68/137 (49%)

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
            +  L++     G  +  L+  ++  +R  +    +Y I++    K     +AV+   ++
Sbjct: 154 TYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEM 213

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
            D+G  P+  TY V++  +   G++D A+E   +LP    +  +  Y I+++G    ER+
Sbjct: 214 RDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERW 273

Query: 259 DEAKSLLNEMRDDGKFP 275
           ++A+ L+ EM   G+ P
Sbjct: 274 EDAEKLMAEMSRKGRPP 290



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 80/176 (45%), Gaps = 2/176 (1%)

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           +SS  + ++ V++  L+      G+++  +   ++ + +       SYN V+    K GK
Sbjct: 354 VSSGCYPDI-VSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGK 412

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
             EA+E   +++ +G  P+  TY+ +   L   G+++ A++ F  +  M I+  +  Y  
Sbjct: 413 TEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNA 472

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
           ++ G         A  L   M  +G  P  +   + +E +   G ++ A E + E+
Sbjct: 473 ILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAYEGLVKEAREMMAEL 528



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 82/201 (40%), Gaps = 1/201 (0%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + HA       D A++ +E + S+  +    S  + L T L +         L+  +   
Sbjct: 333 ILHAFCKQKKMDRAMAFVELMVSSGCYPDIVS-YNTLLTALCRGGEVDAAVELLHQLKDK 391

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
               V +++  ++   + +G  E  L   NE   +       +Y+ + S   + G+  EA
Sbjct: 392 GCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEA 451

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
           ++ F +V D G  PN+  Y  ++  L       SA+++F+ +           Y IL+EG
Sbjct: 452 IKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEG 511

Query: 252 FVGVERFDEAKSLLNEMRDDG 272
                   EA+ ++ E+   G
Sbjct: 512 LAYEGLVKEAREMMAELCSRG 532



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 48/105 (45%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           +T SYNIV+       +  +A +   ++  +G  PN  T+ ++I  L   G ++ A+E+ 
Sbjct: 256 NTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEIL 315

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             +P       S  Y  ++  F   ++ D A + +  M   G +P
Sbjct: 316 DQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYP 360


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 116/541 (21%), Positives = 221/541 (40%), Gaps = 58/541 (10%)

Query: 76  LRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLN 135
           LR  P++ SALS+ +   + PN+S + S  H L   LA++     + TL+  + SSK   
Sbjct: 66  LRRQPDSSSALSLFQWASAQPNYSAHPSVFHELLRQLARAGSFDSMLTLLRQMHSSKIPV 125

Query: 136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQR--AKLLSTESYNIVMSVYAKTGKNFEAVE 193
               F+  ++ Y+TS  L   ++      +R  A    T  YN+ +S+  K  K  + VE
Sbjct: 126 DESTFLIFLETYATSHHLHAEINPLFLLMERDFAVKPDTRFYNVALSLLVKANK-LKLVE 184

Query: 194 TFR-QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
           T   +++ +   P+  T+ ++I  L    +L  A+ +   +P   ++   K +  L++GF
Sbjct: 185 TLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGF 244

Query: 253 VGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNV 311
           +     + A  +   M + G +    ++ V +  + + G I+ A  F+            
Sbjct: 245 IEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFI------------ 292

Query: 312 RYYEDGSDDDEDENDDNNSGV----RIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADA 367
            Y E+G   D+   +   +G+     I  G+++  ++  K     LD ++    SL++  
Sbjct: 293 -YEEEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFE--LDVYTYN--SLISGL 347

Query: 368 KFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDR 427
             +       ++L H  S +   +    V Y             ++  L +  HVE    
Sbjct: 348 CKLGEIDEAVEILHHMVSRDCEPN---TVTYN-----------TLIGTLCKENHVEAATE 393

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFKLMLLYSSL 486
           L   L S G+     T   +I    ++   + A++ F + +   C P  +F     YS L
Sbjct: 394 LARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDP-DEFT----YSIL 448

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           + +L   +R  +A+ +L+EM  SG   +V  ++ L+            + +F  +   GV
Sbjct: 449 IESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGV 508

Query: 547 EPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAA 594
              +  +  LI   CK             +    L PD  T   + K   ++G  K AA 
Sbjct: 509 SRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAAD 568

Query: 595 V 595
           +
Sbjct: 569 I 569



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 44/80 (55%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++L+  L K KR  +A  ++++MI  G+ PD  T++ ++ +F  QGD K    +   + 
Sbjct: 515 YNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMT 574

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
            NG EPD   +  LI   CK
Sbjct: 575 LNGCEPDIVTYGTLIGGLCK 594



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 93/459 (20%), Positives = 170/459 (37%), Gaps = 28/459 (6%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           +++ L   L K  R  E    I +     F    V F  L+     +G ++  L   +  
Sbjct: 271 SVNVLVNGLCKEGRIEEALRFIYE--EEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFM 328

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
            ++   L   +YN ++S   K G+  EAVE    ++     PN+ TY  +I  L     +
Sbjct: 329 LEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHV 388

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVA 282
           ++A E+   L    +      +  L++G       + A  L  EM++ G  P      + 
Sbjct: 389 EAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSIL 448

Query: 283 LERMQEMGFIQGANEFLREMLPDKRIKNVRYYE---DG------SDDDEDENDDNN---- 329
           +E +     ++ A   L+EM      +NV  Y    DG        D ED  D       
Sbjct: 449 IESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGV 508

Query: 330 SGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPE 387
           S   + Y   +      K +          ++  L   KF +TT L   C+     ++ +
Sbjct: 509 SRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAAD 568

Query: 388 TAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLI 447
              +         G   D+     ++  L + G V++  +L+  ++  GM L       +
Sbjct: 569 IVQNM-----TLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPV 623

Query: 448 IDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDF-DAINVLEEM 506
           I      K+   A++ F +      P      ++ Y  + R L        +A++   EM
Sbjct: 624 IQALCKRKRTKEAMRLFREMMEKGDPPD----VITYKIVFRGLCNGGGPIQEAVDFTVEM 679

Query: 507 IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
           +  GI+P+  +F  L         E  + +L +MV + G
Sbjct: 680 LEKGILPEFPSFGFLAEGLCSLSMEDTLIQLINMVMEKG 718



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/221 (20%), Positives = 96/221 (43%), Gaps = 2/221 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A+ I+  + S  +   N  T + L   L K         L   ++S   L     F +
Sbjct: 354 DEAVEILHHMVSR-DCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNS 412

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+Q    + + E+ +  + E +++       +Y+I++       +  EA+   +++   G
Sbjct: 413 LIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSG 472

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
              N   Y  +I+ L    ++  A ++F  + ++ + R+S  Y  L+ G    +R +EA 
Sbjct: 473 CARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAA 532

Query: 263 SLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREM 302
            L+++M  +G  P +      L+   + G I+ A + ++ M
Sbjct: 533 QLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNM 573



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 97/257 (37%), Gaps = 43/257 (16%)

Query: 379 VLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR 438
           +LR      +A   F W + QP Y+       ++L  LAR G  + +  L+ ++ S  + 
Sbjct: 65  LLRRQPDSSSALSLFQWASAQPNYSAHPSVFHELLRQLARAGSFDSMLTLLRQMHSSKIP 124

Query: 439 LPFSTIRLIIDFYGISKKADAALKAFH-----------DDR------TLCGPISKFKLML 481
           +  ST  + ++ Y  S    A +               D R      +L    +K KL+ 
Sbjct: 125 VDESTFLIFLETYATSHHLHAEINPLFLLMERDFAVKPDTRFYNVALSLLVKANKLKLVE 184

Query: 482 LYSS----------------LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF 525
              S                L+R L K  +   AI +LE+M   G+ PD +TF+ LM  F
Sbjct: 185 TLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGF 244

Query: 526 ALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK----------YLSNSNLMPDAAT 575
             + D +   ++  ++ ++G E  +    VL+   CK                  PD  T
Sbjct: 245 IEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIYEEEGFCPDQVT 304

Query: 576 KELLKKSLWKEGRRKEA 592
              L   L + G  K+ 
Sbjct: 305 FNALVNGLCRTGHIKQG 321



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 29/138 (21%), Positives = 62/138 (44%), Gaps = 1/138 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+     +G +++        + +  +L+ ++YN V+    K  +  EA+  FR+
Sbjct: 583 VTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFRE 642

Query: 198 VIDEGAIPNSRTYTVMIEHLVN-LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           ++++G  P+  TY ++   L N  G +  A++    +    I      +  L EG   + 
Sbjct: 643 MMEKGDPPDVITYKIVFRGLCNGGGPIQEAVDFTVEMLEKGILPEFPSFGFLAEGLCSLS 702

Query: 257 RFDEAKSLLNEMRDDGKF 274
             D    L+N + + G+F
Sbjct: 703 MEDTLIQLINMVMEKGRF 720


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 97/443 (21%), Positives = 178/443 (40%), Gaps = 61/443 (13%)

Query: 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT 211
           D+    S +N   ++    +  SY  ++    + G+  E +  F+++ ++   P  RTYT
Sbjct: 19  DVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYT 78

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
           V++  L   G+   A+ +FS +     +     Y +++       + +E + +L+EM + 
Sbjct: 79  VIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEK 138

Query: 272 GKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNS 330
           G  P      AL +   + G ++ A E L  M  +    N R Y           ++   
Sbjct: 139 GLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTY-----------NELIC 187

Query: 331 GVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW 390
           G      V     L  K L + L   +P VV+      +       CK+       ++A+
Sbjct: 188 GFCRKKNVHRAMALLSKMLESRL---TPSVVT------YNSLIHGQCKI----GYLDSAY 234

Query: 391 HFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF 450
                +  + G   D +     +  L + G +E  + L   L+  G++        +ID 
Sbjct: 235 RLL-NLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDG 293

Query: 451 YGISKKADAALKAFHDDRTL---CGPISKF---------------KLMLLYSSLLRTLTK 492
           Y  + K D A      DR L   C P S                 + +LL  S+++   K
Sbjct: 294 YCKAGKMDDANSLL--DRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLK 351

Query: 493 C--------------KRDFD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL 537
           C              + DFD A  +L++M+ SG  PDV  ++  ++ F  +G+ K  + +
Sbjct: 352 CTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDM 411

Query: 538 FSMVRQNGVEPDAYMFKVLIQAY 560
            SM+ + GV PDA  + ++I AY
Sbjct: 412 MSMMFERGVMPDALTYTLVIDAY 434



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 101/565 (17%), Positives = 211/565 (37%), Gaps = 68/565 (12%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           ++ HAL  +     A+++   ++       N  T   +   + K  +  E + ++ ++  
Sbjct: 79  VIVHALFESGRRMEAINLFSEMRER-GCEPNIHTYTVMINAMCKETKLEEGRRILDEMVE 137

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
              +     +  L+  Y   G +E      +     +   +  +YN ++  + +      
Sbjct: 138 KGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHR 197

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A+    ++++    P+  TY  +I     +G LDSA  + + +    +      Y + ++
Sbjct: 198 AMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFID 257

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIK 309
                 R +EA  L N +++ G      +  AL +   + G +  AN  L  ML +  + 
Sbjct: 258 TLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLP 317

Query: 310 NVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF 369
           N   Y    D    E        ++   + L   +  K L  T+  ++  +V++L +  F
Sbjct: 318 NSSTYNALIDGLCKER-------KVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDF 370

Query: 370 VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
            +  R++ +++                 YQP    DVY     +      G+++  + ++
Sbjct: 371 DYAHRILDQMVSS--------------GYQP----DVYIYTAFIHAFCTRGNIKEAEDMM 412

Query: 430 AKLRSDGMRLPFSTIRLIIDFYG---ISKKADAALKAFHDDRTLCGPISKFKLMLLYSSL 486
           + +   G+     T  L+ID YG   +   A   LK   D  T C P       L+   L
Sbjct: 413 SMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFD--TGCDPSHHTYSCLIKHLL 470

Query: 487 LRTLTKCKRDF------------------------DAINVLEEMIFSGIVPDVQTFSGLM 522
              LTK  ++                          A+ + E+M+  G  P++ T++ L+
Sbjct: 471 KEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEKMLEHGCSPNINTYAKLI 530

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLM 570
                 G   + QKLF  + + GV P   ++  L+   C+             +     +
Sbjct: 531 IGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGHL 590

Query: 571 PDAATKELLKKSLWKEGRRKEAAAV 595
           P   +  +L   L++EG +++A  V
Sbjct: 591 PLLESLNVLFCGLYEEGSKEKAKVV 615



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/138 (20%), Positives = 64/138 (46%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V++ NL+      G ++  ++ + + R+     +  +Y +++    ++G+  EA+  F +
Sbjct: 40  VSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSE 99

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + + G  PN  TYTVMI  +    KL+    +   +    +  +   Y  L++G+     
Sbjct: 100 MRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGM 159

Query: 258 FDEAKSLLNEMRDDGKFP 275
            + A+ +L+ M  +   P
Sbjct: 160 VEAAQEILDLMHSNSCNP 177



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 12/125 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++L+  L +  R  + IN+ ++M      P V+T++ +++     G       LFS +R
Sbjct: 42  YTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMR 101

Query: 543 QNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRK 590
           + G EP+ + + V+I A CK             +    L+P   T   L     KEG  +
Sbjct: 102 ERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVE 161

Query: 591 EAAAV 595
            A  +
Sbjct: 162 AAQEI 166


>gi|168028441|ref|XP_001766736.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681945|gb|EDQ68367.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 560

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 112/270 (41%), Gaps = 18/270 (6%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
           W P+ +  L+      +   + +VL+H K    A  FF W   Q GY HDV     M+ I
Sbjct: 17  WRPDTLVALSRVNRTLSAFHINEVLKHQKESGLALKFFDWAKEQEGYKHDVCTYTTMIGI 76

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPI 474
           + R  + E   RL+ ++R +G      T   +I  YG +     A++ F+      C P 
Sbjct: 77  MGRARNFEACSRLLQEMRREGCEPCVVTYNRLIHAYGRANFLGEAMRIFYQMQEEGCSPD 136

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
                 + Y +L+   +K     +A+++ ++M  +G  PD  T+S +++     G     
Sbjct: 137 R-----VTYCTLVDLHSKAGFHDNAMDMYQKMQQAGFQPDTFTYSVIIHCLGKAGKVSEA 191

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKS 582
            KLF  + + G  P    + ++I    K             + ++   PD  T  ++ + 
Sbjct: 192 LKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDAGFHPDRVTYSIMMEV 251

Query: 583 LWKEGRRKEAAAVEERCEKINDVPSLALRG 612
           L + G  +EA  +    E+   VP   + G
Sbjct: 252 LGQIGHLQEAELMFNEMEQAGWVPDAPIYG 281



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/254 (19%), Positives = 109/254 (42%), Gaps = 6/254 (2%)

Query: 64  DRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT 123
           +R L  F +   L+    +  AL   +  K    + H+  T   +  ++ +++       
Sbjct: 29  NRTLSAFHINEVLKHQKESGLALKFFDWAKEQEGYKHDVCTYTTMIGIMGRARNFEACSR 88

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L+ ++         V +  L+  Y  +  L   +  + + ++        +Y  ++ +++
Sbjct: 89  LLQEMRREGCEPCVVTYNRLIHAYGRANFLGEAMRIFYQMQEEGCSPDRVTYCTLVDLHS 148

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           K G +  A++ ++++   G  P++ TY+V+I  L   GK+  AL++F  +       +  
Sbjct: 149 KAGFHDNAMDMYQKMQQAGFQPDTFTYSVIIHCLGKAGKVSEALKLFEEMVERGFAPSLV 208

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
            Y I+++       +  A  L N+M+D G  P R    + +E + ++G +Q A     EM
Sbjct: 209 TYNIIIDLQAKSGNYVMAMKLYNDMQDAGFHPDRVTYSIMMEVLGQIGHLQEAELMFNEM 268

Query: 303 -----LPDKRIKNV 311
                +PD  I  V
Sbjct: 269 EQAGWVPDAPIYGV 282



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 36/196 (18%), Positives = 80/196 (40%), Gaps = 1/196 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           ++ H L  A     AL + E +     F+ +  T + +  + AKS        L  D+  
Sbjct: 177 VIIHCLGKAGKVSEALKLFEEMVER-GFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQD 235

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           + F    V +  +M+     G L+     +NE  Q   +     Y +++ ++ K      
Sbjct: 236 AGFHPDRVTYSIMMEVLGQIGHLQEAELMFNEMEQAGWVPDAPIYGVMVDMWGKARNAER 295

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A+E +++++D G  PN +    ++   + + + D A  V   +    +  T + + IL+ 
Sbjct: 296 ALEWYQKMLDSGLTPNVQISNSLLGSYLRMQQFDLAFGVIETMKAWGLVPTLQTHTILLS 355

Query: 251 GFVGVERFDEAKSLLN 266
                 +  +  +L++
Sbjct: 356 SCTASAQHHQVVNLMH 371



 Score = 40.0 bits (92), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 38/199 (19%), Positives = 86/199 (43%), Gaps = 13/199 (6%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D+A+ + + ++    F  +  T   +   L K+ +  E   L  ++    F    V +  
Sbjct: 154 DNAMDMYQKMQ-QAGFQPDTFTYSVIIHCLGKAGKVSEALKLFEEMVERGFAPSLVTYNI 212

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           ++   + SG+  + +  +N+ +         +Y+I+M V  + G   EA   F ++   G
Sbjct: 213 IIDLQAKSGNYVMAMKLYNDMQDAGFHPDRVTYSIMMEVLGQIGHLQEAELMFNEMEQAG 272

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSAL------PLMRIKRTSKQYLILVEGFVGVE 256
            +P++  Y VM++        + ALE +  +      P ++I  +      L+  ++ ++
Sbjct: 273 WVPDAPIYGVMVDMWGKARNAERALEWYQKMLDSGLTPNVQISNS------LLGSYLRMQ 326

Query: 257 RFDEAKSLLNEMRDDGKFP 275
           +FD A  ++  M+  G  P
Sbjct: 327 QFDLAFGVIETMKAWGLVP 345


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 118/518 (22%), Positives = 210/518 (40%), Gaps = 68/518 (13%)

Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
           G +E  L   +E RQ A    T +YNI++ +  K G+   A++    + + G  PN  T 
Sbjct: 392 GKVEEALRIHDEMRQDAAPNLT-TYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTV 450

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
            +MI+ L    KLD A  +F  L        S+ +  L++G     R D+A SL  +M D
Sbjct: 451 NIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLD 510

Query: 271 DGKFPGRAMRVAL-ERMQEMGFIQGANEFLREML-----PDKRIKNVRYYEDGSDDDEDE 324
             + P   +  +L +   + G  +  ++  +EM+     PD  + N  Y +      E E
Sbjct: 511 SDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLN-SYMDCVFKAGEVE 569

Query: 325 NDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFK 384
                       G  L   +  + L   +  +S  ++  L  A F   +R   K+    K
Sbjct: 570 K-----------GRALFEEIKAQGLVPDVRSYSI-LIHGLVKAGF---SRETYKLFYEMK 614

Query: 385 SPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI 444
             E   H             DV A   ++    + G V+   +L+ ++++ G++    T 
Sbjct: 615 --EQGLHL------------DVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTY 660

Query: 445 RLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLE 504
             ++D      + D A   F + +++   ++    +++YSSL+    K  R  +A  +LE
Sbjct: 661 GSVVDGLAKIDRLDEAYMLFEEAKSIGVDLN----VVIYSSLIDGFGKVGRIDEAYLILE 716

Query: 505 EMIFSGIVPDVQTFSGLMYHFALQGDEKI--VQKLFSMVRQNGVEPDAYMFKVLIQAYC- 561
           E++  G+ P+  T++ L+   AL   E+I   Q  F  ++     P+A  + ++I   C 
Sbjct: 717 ELMQKGLTPNSYTWNCLLD--ALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCM 774

Query: 562 -----------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP-SLA 609
                      + +    L P+  T   +   L K G   EA  + +R +    VP S  
Sbjct: 775 IRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARGLFDRFKASGGVPDSAC 834

Query: 610 LRGHIWAVSSADL----------TRVHSIYRNSITSIV 637
               I  +SSA+           TR+     NS T +V
Sbjct: 835 YNAMIEGLSSANKAMDAYIVFEETRLKGCRVNSKTCVV 872



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 102/220 (46%), Gaps = 9/220 (4%)

Query: 57  SLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQ 116
            LS+ ++  L+  F+ +H L+ A      + +M   K  P FS   + + AL+     + 
Sbjct: 165 GLSNHVSVELVASFVKSHKLKEAF---GVIEMMRKFKFRPAFSAYTTLIGALSA----AN 217

Query: 117 RNHELKTLIGDISSSKF-LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
           R   + TL   +    +  NV + F  L++ ++  G ++  LS  +E +  +       Y
Sbjct: 218 RPDPMLTLFHQMQEIGYEANVHL-FTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLY 276

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           N+ +  + K GK   A + F ++  +G +P+  TYT +I  L    +LD A+E+F  L L
Sbjct: 277 NVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDL 336

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            R       Y  ++ G+    +FDEA SLL   +  G  P
Sbjct: 337 NRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIP 376



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/157 (21%), Positives = 70/157 (44%), Gaps = 4/157 (2%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           GY  +V+    ++ + AR G ++    L+ +++S+          + ID +G   K D A
Sbjct: 233 GYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMA 292

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
            K FH+ +   G +      + Y++L+  L K +R  +A+ + EE+  +  VP V  ++ 
Sbjct: 293 WKFFHEMKAQ-GLVPD---DVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNT 348

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           ++  +   G       L    ++ G  P    +  ++
Sbjct: 349 MIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCIL 385



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 1/205 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+   L  A   D A SI   L  +   S +  T  +L   L +  R  +  +L   +  
Sbjct: 452 IMIDRLCKAQKLDEACSIFLGL-DHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLD 510

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           S  +   V + +L+Q +   G  E     + E   R         N  M    K G+  +
Sbjct: 511 SDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEK 570

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
               F ++  +G +P+ R+Y+++I  LV  G      ++F  +    +      Y  +++
Sbjct: 571 GRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVID 630

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP 275
           GF    + D+A  LL EM+  G  P
Sbjct: 631 GFCKSGKVDKAYQLLEEMKTKGLQP 655



 Score = 46.6 bits (109), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 29/129 (22%), Positives = 60/129 (46%)

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
           M     +G++E   + + E + +  +    SY+I++    K G + E  + F ++ ++G 
Sbjct: 559 MDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGL 618

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
             +   Y  +I+     GK+D A ++   +    ++ T   Y  +V+G   ++R DEA  
Sbjct: 619 HLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYM 678

Query: 264 LLNEMRDDG 272
           L  E +  G
Sbjct: 679 LFEEAKSIG 687



 Score = 46.6 bits (109), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 56/269 (20%), Positives = 101/269 (37%), Gaps = 24/269 (8%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
           W P+V   L     +    ++  V++  K    A+ +F WV  +    H        L +
Sbjct: 83  WGPDVEEALNVFDEMSQPEVIVGVMKRLKDVNVAFQYFRWVERKTQQAHCPEVYNAFLMV 142

Query: 416 LARHGHVELVDRLIAKLRSDGMRLP-FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI 474
           +AR  +++ +++++ ++   G  L    ++ L+  F   S K   A       R      
Sbjct: 143 MARTRNLDYLEQILEEMSVAGFGLSNHVSVELVASFVK-SHKLKEAFGVIEMMR------ 195

Query: 475 SKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
            KFK       Y++L+  L+   R    + +  +M   G   +V  F+ L+  FA +G  
Sbjct: 196 -KFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRI 254

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELL 579
                L   ++ N    D  ++ V I  + K             +    L+PD  T   L
Sbjct: 255 DAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTL 314

Query: 580 KKSLWKEGRRKEAAAVEERCEKINDVPSL 608
              L K  R  EA  + E  +    VP +
Sbjct: 315 IGVLCKARRLDEAVELFEELDLNRSVPCV 343



 Score = 45.8 bits (107), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 44/213 (20%), Positives = 85/213 (39%), Gaps = 3/213 (1%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           V      +   D A  ++E +K+         T  ++   LAK  R  E   L  +  S 
Sbjct: 628 VIDGFCKSGKVDKAYQLLEEMKTK-GLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSI 686

Query: 132 KF-LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
              LNV + + +L+  +   G ++       E  Q+    ++ ++N ++    K  +  E
Sbjct: 687 GVDLNVVI-YSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDE 745

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A   F+ + +    PN+ TY++MI  L  + K + A   +  +    +K  +  Y  ++ 
Sbjct: 746 AQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIA 805

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
           G        EA+ L +  +  G  P  A   A+
Sbjct: 806 GLAKAGNVMEARGLFDRFKASGGVPDSACYNAM 838



 Score = 43.5 bits (101), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 77/189 (40%), Gaps = 4/189 (2%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A  I+E L      + N  T + L   L K++   E +    ++ + K    ++ +  
Sbjct: 709 DEAYLILEELMQK-GLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSI 767

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           ++               W E +++    +  +Y  +++  AK G   EA   F +    G
Sbjct: 768 MINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARGLFDRFKASG 827

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +P+S  Y  MIE L +  K   A  VF    L   +  SK  ++L++     +  ++A 
Sbjct: 828 GVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGCRVNSKTCVVLLDALHKADCLEQAA 887

Query: 263 ---SLLNEM 268
              ++L EM
Sbjct: 888 IVGAVLREM 896



 Score = 39.3 bits (90), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 39/195 (20%), Positives = 78/195 (40%), Gaps = 6/195 (3%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D+ALS+++ +KSN +F+ +    +       K  +         ++ +   +   V +  
Sbjct: 255 DAALSLLDEMKSN-SFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTT 313

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+     +  L+  +  + E      +    +YN ++  Y   GK  EA     +   +G
Sbjct: 314 LIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKG 373

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK--QYLILVEGFVGVERFDE 260
            IP+   Y  ++  L   GK++ AL +      MR         Y IL++        + 
Sbjct: 374 CIPSVIAYNCILTCLGRKGKVEEALRIHDE---MRQDAAPNLTTYNILIDMLCKAGELEA 430

Query: 261 AKSLLNEMRDDGKFP 275
           A  + + M++ G FP
Sbjct: 431 ALKVQDTMKEAGLFP 445


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 111/539 (20%), Positives = 203/539 (37%), Gaps = 70/539 (12%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           + A+++ME + +N   +   +T +AL   L K  R  E   L+  I  +      V + +
Sbjct: 3   EEAVALMEKITAN-GCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTS 61

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+               + E   R   L T  Y  ++    +TGK  +A   ++ +   G
Sbjct: 62  LIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHG 121

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +P+  T + MI+ L   G++ +A+ +F ++    +      Y  L+ G     + D A 
Sbjct: 122 CVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCAL 181

Query: 263 SLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREML-----PDKRIKNV---RY 313
            +L +M+     P      V ++ + + G ++ A  F  EML     PD    N+    +
Sbjct: 182 EMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGF 241

Query: 314 YEDGSDDD-----EDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAK 368
            + G+ D        E   N   + I     +  WL         ++   E V+L+    
Sbjct: 242 CKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAK-------NKKIEEAVALME--- 291

Query: 369 FVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRL 428
                    K+  +  +P  A +                    +L  L + G +E    L
Sbjct: 292 ---------KITANGCTPTIATY------------------NALLNGLCKMGRLEEAIDL 324

Query: 429 IAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL-MLLYSSLL 487
           + K+  +G      T   +ID  G  K++  A K F +       +    L  + Y++L+
Sbjct: 325 LRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEM-----ALRGLALDTVCYTALI 379

Query: 488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE 547
           R L +  +   A +V + M   G VPDV T S ++   +  G      ++F  +   G+ 
Sbjct: 380 RELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLA 439

Query: 548 PDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAA 594
           P+  ++  LI   CK             +  +   PD  T  +L   L K G  + A A
Sbjct: 440 PNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARA 498



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 96/487 (19%), Positives = 189/487 (38%), Gaps = 39/487 (8%)

Query: 80  PNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
           P A S    M +    P+      TL  +   L+K+ R      +   + +       V 
Sbjct: 108 PQASSVYKTMTSHGCVPDVV----TLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVV 163

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  L+     +  ++  L    + ++      T +YN+++    K+G    A   F +++
Sbjct: 164 YSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEML 223

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA-LPLMRIKRTSKQYLILVEGFVGVERF 258
           + G  P+  TY ++I      G  D+A    +    +         Y  +V+     ++ 
Sbjct: 224 EAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKI 283

Query: 259 DEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDG 317
           +EA +L+ ++  +G  P  A   AL   + +MG ++ A + LR+++ +    +V  Y   
Sbjct: 284 EEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSL 343

Query: 318 SDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVC 377
            D    E        R     +L   +  + LA  LD               V  T L+ 
Sbjct: 344 IDGLGKEK-------RSFEAYKLFKEMALRGLA--LDT--------------VCYTALIR 380

Query: 378 KVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM 437
           ++L+  K P+ +  +    ++  G   DV  L  M+  L++ G +    R+   + + G+
Sbjct: 381 ELLQTGKIPQASSVYKTMTSH--GCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGL 438

Query: 438 RLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
                    +I     ++K D AL+      +  C P +     + Y+ L+  L K   D
Sbjct: 439 APNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDT-----ITYNILIDGLCK-SGD 492

Query: 497 FDAINVL-EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV 555
            +A     +EM+ +G  PDV T++ L+  F   G+      +F  +  +    +   +  
Sbjct: 493 VEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGA 552

Query: 556 LIQAYCK 562
           LI   CK
Sbjct: 553 LISGLCK 559



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 38/193 (19%), Positives = 72/193 (37%), Gaps = 4/193 (2%)

Query: 80  PNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
           P A S    M +    P+      TL  +   L+K+ R      +   + +       V 
Sbjct: 389 PQASSVYKTMTSHGCVPDVV----TLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVV 444

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  L+     +  ++  L    + ++      T +YNI++    K+G    A   F +++
Sbjct: 445 YSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEML 504

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           + G  P+  TY ++I      G  D+A  VF  +   R       Y  L+ G     +  
Sbjct: 505 EAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRRQLT 564

Query: 260 EAKSLLNEMRDDG 272
           +A      M++ G
Sbjct: 565 KASLYFQHMKERG 577



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 82/434 (18%), Positives = 156/434 (35%), Gaps = 33/434 (7%)

Query: 40  AQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVT-----HALRSAPNADSALSIMEALKS 94
           + +ID +  A R  ++  +   +  R L P  V      H L  A   D AL ++  +K 
Sbjct: 130 STMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMK- 188

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
               + +  T + L   L KS      +    ++  +        +  L+  +  +G+ +
Sbjct: 189 KAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTD 248

Query: 155 LVL-STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
               S   E       +   +Y  ++   AK  K  EAV    ++   G  P   TY  +
Sbjct: 249 AASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNAL 308

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           +  L  +G+L+ A+++   +           Y  L++G    +R  EA  L  EM   G 
Sbjct: 309 LNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGL 368

Query: 274 FPGRAMRVALER-MQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGV 332
                   AL R + + G I  A+   + M     + +V       D             
Sbjct: 369 ALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAG------- 421

Query: 333 RIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHF 392
           RI   V++   ++ + LA     +S  +  L    K      ++ ++ + F +P+T    
Sbjct: 422 RIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDT---- 477

Query: 393 FCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYG 452
                     T+++     ++  L + G VE       ++   G +    T  ++I  + 
Sbjct: 478 ---------ITYNI-----LIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFC 523

Query: 453 ISKKADAALKAFHD 466
            +   DAA   F D
Sbjct: 524 KAGNTDAACGVFDD 537


>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
          Length = 632

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 116/553 (20%), Positives = 226/553 (40%), Gaps = 65/553 (11%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           +D ++V   +++    +  +          N+ H+ ST  AL   L   ++  E+  +I 
Sbjct: 88  VDHWLVREVMKTDVGVNVKMQFFRWAAKKRNYQHDTSTYMALIHCLELVEQYGEMWKMIQ 147

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELV---LSTWNEYRQRAKLLSTESYNIVMSVYA 183
           ++  S    V+   M L Q     G+ +++   ++ + + + R    + ++YN ++ +  
Sbjct: 148 EMVRSPICVVTP--MELSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLI 205

Query: 184 KTGKNFEAVETFRQVIDEGAI-PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
             G+  +  E + ++ +EG   P++ TY+ +I     LG+ DSA+ + + +    ++ T+
Sbjct: 206 HEGQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTA 265

Query: 243 KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER-MQEMGFIQGANEFLRE 301
           K Y +++  F  ++    A SL  EMR     P       L R + + G I  A  F  E
Sbjct: 266 KIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHE 325

Query: 302 ML-----PDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEW 356
           M      PD  + N              N    +G R+  G++L    +   +++ +   
Sbjct: 326 MQREGCKPDTVVMNNMI-----------NFLGKAG-RLDDGLKL---FEEMGVSHCI--- 367

Query: 357 SPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQ--PGYTHDVYALEKMLT 414
            P VV          T   + K L  F+S       F W       G +   +    ++ 
Sbjct: 368 -PNVV----------TYNTIIKAL--FESKSRVSEVFSWFERMKGSGISPSPFTYSILID 414

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI 474
              +   +E    L+ ++   G     +    +ID  G +K+ D A + F + +  CG  
Sbjct: 415 GFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSS 474

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA--LQGDEK 532
           S      +Y+ +++ L K  R  DAIN+ +EM   G  P+V  ++ LM   A     DE 
Sbjct: 475 SA----RVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEA 530

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLK 580
           +       ++++G  PD   + +++    K             + NS + PDA +   + 
Sbjct: 531 LTT--MRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVL 588

Query: 581 KSLWKEGRRKEAA 593
            +L   G  +EAA
Sbjct: 589 SALSHAGMFEEAA 601



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 93/214 (43%), Gaps = 21/214 (9%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRN------- 118
           L+D F  T+ +      + A+ ++E +     F    +   +L   L K++R        
Sbjct: 412 LIDGFCKTNRI------EKAMMLLEEMDEK-GFPPCPAAYCSLIDALGKAKRYDLACELF 464

Query: 119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV 178
            ELK   G  SS++   V +  +        +G L+  ++ ++E  +     +  +YN +
Sbjct: 465 QELKENCGS-SSARVYAVMIKHL------GKAGRLDDAINLFDEMSKLGCTPNVYAYNAL 517

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI 238
           MS  A+     EA+ T R++ + G +P+  +Y +++  L   G    A+E+ + +    I
Sbjct: 518 MSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTI 577

Query: 239 KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           K  +  Y  ++        F+EA  L+ EM   G
Sbjct: 578 KPDAVSYNTVLSALSHAGMFEEAAELMKEMNALG 611



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 110/263 (41%), Gaps = 40/263 (15%)

Query: 355 EWSP------EVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDV-- 406
           +W P      EV+ L  D    W  R   +V++          FF W A +  Y HD   
Sbjct: 72  KWGPDAERALEVLMLRVDH---WLVR---EVMKTDVGVNVKMQFFRWAAKKRNYQHDTST 125

Query: 407 -YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465
             AL   L ++ ++G  E+   +   +RS    +    +  +I   G +K    A+  F+
Sbjct: 126 YMALIHCLELVEQYG--EMWKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAITIFY 183

Query: 466 DDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVL-EEMIFSG-IVPDVQTFSGLM 522
             +   C P ++      Y+S++  L   +  ++ ++ L  EM   G   PD  T+S L+
Sbjct: 184 QIKARKCQPTAQ-----AYNSMIIMLIH-EGQYEKVHELYNEMSNEGHCQPDTVTYSALI 237

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSN-------------L 569
             F   G +    +L + +++NG++P A ++ ++I  + K L N +              
Sbjct: 238 SAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFK-LDNVHGALSLFEEMRYMYC 296

Query: 570 MPDAATKELLKKSLWKEGRRKEA 592
            PD  T   L + L K GR  EA
Sbjct: 297 RPDVFTYTELIRGLGKAGRIDEA 319



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 88/223 (39%), Gaps = 14/223 (6%)

Query: 16  FTQLQTRSFVRAPFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH- 74
           F +++      +PFT  +        LID      R   +  L   ++++   P    + 
Sbjct: 394 FERMKGSGISPSPFTYSI--------LIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYC 445

Query: 75  ----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
               AL  A   D A  + + LK N   S +      +   L K+ R  +   L  ++S 
Sbjct: 446 SLIDALGKAKRYDLACELFQELKENCG-SSSARVYAVMIKHLGKAGRLDDAINLFDEMSK 504

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                    +  LM   + +  L+  L+T  + ++   L    SYNI+++  AKTG    
Sbjct: 505 LGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHR 564

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           A+E    + +    P++ +Y  ++  L + G  + A E+   +
Sbjct: 565 AMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEM 607



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 43/233 (18%), Positives = 81/233 (34%), Gaps = 2/233 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+     S        S  E +K +   S +  T   L     K+ R  +   L+ ++  
Sbjct: 376 IIKALFESKSRVSEVFSWFERMKGS-GISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDE 434

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
             F      + +L+     +   +L    + E ++     S   Y +++    K G+  +
Sbjct: 435 KGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDD 494

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A+  F ++   G  PN   Y  ++  L     LD AL     +           Y I++ 
Sbjct: 495 AINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILN 554

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREM 302
           G         A  +L  M++    P   +    L  +   G  + A E ++EM
Sbjct: 555 GLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEM 607


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 95/442 (21%), Positives = 175/442 (39%), Gaps = 56/442 (12%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SY  V++ + K G   +A  T+ +++D G +PN  TY  +I  L     +D A+EV +++
Sbjct: 201 SYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSM 260

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
               +    + Y  +V G+    +  EA   L +M  DG  P                + 
Sbjct: 261 VKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD---------------VV 305

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVR---IAYGVQLKPWLDPKALA 350
             N  +  +  + R    R   D              G++     YG  L+ +    AL 
Sbjct: 306 TYNSLMDYLCKNGRCTEARKMFDSM---------TKRGLKPEITTYGTLLQGYATKGALV 356

Query: 351 NTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
                    V + +    +V++  L+C   +  K  +    F      Q G   D     
Sbjct: 357 EMHGLLDLMVRNGIHPNHYVFSI-LICAYAKQGKVDQAMLVF--SKMRQQGLNPDTVTYG 413

Query: 411 KMLTILARHGHVE----LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD 466
            ++ IL + G VE      +++I +  S G  +  S I  +  F    K  +  L+    
Sbjct: 414 TVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML-- 471

Query: 467 DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
           DR +C         + ++S++ +  K  R  ++  + + M+  G+ P++ T+S L+  + 
Sbjct: 472 DRGICLDT------IFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYC 525

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAA 574
           L G      KL + +   G++PD   +  LI  YCK             + +S + PD  
Sbjct: 526 LAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDII 585

Query: 575 TKELLKKSLWKEGRRKEAAAVE 596
           T  ++ + L++   R+ AAA E
Sbjct: 586 TYNIILQGLFQT--RRTAAAKE 605



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 110/524 (20%), Positives = 207/524 (39%), Gaps = 47/524 (8%)

Query: 64  DRLLDPFIVTH-----ALRSAPNADSALSIMEALKSN---PNFSHNQSTLHALATVLAKS 115
           DR + P +VT+     AL  A   D A+ ++ ++  N   PN     S +H   +    S
Sbjct: 227 DRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCS----S 282

Query: 116 QRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
            +  E    +  + S       V + +LM +   +G        ++   +R       +Y
Sbjct: 283 GQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTY 342

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
             ++  YA  G   E       ++  G  PN   ++++I      GK+D A+ VFS +  
Sbjct: 343 GTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQ 402

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFI--- 292
             +   +  Y  ++       R ++A     +M D+   PG  +  +L  +  +      
Sbjct: 403 QGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSL--IHSLCIFDKW 460

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSG------VRIAYGVQLKPW--- 343
             A E + EML      +  ++    D    E     S       VRI     +  +   
Sbjct: 461 DKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTL 520

Query: 344 LDPKALANTLDEWS---PEVVSLLADAKFVWTTRLV---CKVLRHFKSPETAWHFFCWVA 397
           +D   LA  +DE +     +VS+      V    L+   CK+ R     E A   F  + 
Sbjct: 521 IDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRM----EDALVLFREME 576

Query: 398 YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK- 456
              G + D+     +L  L +         L   +   G +L  ST  +I+  +G+ K  
Sbjct: 577 -SSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIIL--HGLCKNN 633

Query: 457 -ADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
             D AL+ F +   LC  ++  +L    ++ ++  L K  R+ +A ++   +  +G+VPD
Sbjct: 634 LTDEALRMFQN---LC--LTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPD 688

Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           V+T+S +  +   QG  + +  LF  + +NG   ++ M   +++
Sbjct: 689 VRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVR 732



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 110/559 (19%), Positives = 212/559 (37%), Gaps = 69/559 (12%)

Query: 77  RSAPNADSALSIMEALKSNPN-FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLN 135
           R++   D  L  M  L   PN FS+N   L  L     +SQ   EL  ++ D       +
Sbjct: 141 RTSDAMDIVLRRMTQLGCIPNVFSYN-ILLKGLCDE-NRSQEALELLQMMPDDGGDCPPD 198

Query: 136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF 195
           V V++  ++  +   GDL+    T++E   R  L +  +YN +++   K     +A+E  
Sbjct: 199 V-VSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVL 257

Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
             ++  G +PN RTY  ++    + G+   A+     +    ++     Y  L++     
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 256 ERFDEAKSLLNEMRDDGKFP----------GRAMRVALERMQEMGFIQGANEFLREMLPD 305
            R  EA+ + + M   G  P          G A + AL  M  +  +   N     + P+
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN----GIHPN 373

Query: 306 KRIKNV---RYYEDGSDD----------DEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
             + ++    Y + G  D           +  N D      + YG  +        + + 
Sbjct: 374 HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDT-----VTYGTVIGILCKSGRVEDA 428

Query: 353 LDEWSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
           +  +   +   L+    V+ + +  +C   +  K+ E             G   D     
Sbjct: 429 MRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML-----DRGICLDTIFFN 483

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470
            ++    + G V   ++L   +   G++    T   +ID Y ++ K D A K      + 
Sbjct: 484 SIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVS- 542

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG- 529
              +      + Y++L+    K  R  DA+ +  EM  SG+ PD+ T     Y+  LQG 
Sbjct: 543 ---VGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIIT-----YNIILQGL 594

Query: 530 ----DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDA 573
                    ++L+  + ++G + +   + +++   CK             L  ++L  + 
Sbjct: 595 FQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLET 654

Query: 574 ATKELLKKSLWKEGRRKEA 592
            T  ++  +L K GR  EA
Sbjct: 655 RTFNIMIGALLKVGRNDEA 673


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 100/472 (21%), Positives = 192/472 (40%), Gaps = 56/472 (11%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +   ++ +  + D +     + E R+R   ++  +YN+++S   ++G   EA     +++
Sbjct: 248 YSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMV 307

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           D G  P++ TY  ++  L   G+L  A  +   +    +K     Y  LV+GF+   +  
Sbjct: 308 DYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAA 367

Query: 260 EAKSLLNEMRDDGKFPGRAMRVALER-MQEMGFIQGANEFLREML-----PDKRIKNV-- 311
           EA  +LNEM   G  P + M   L R + ++G +  A++ L EM+     PD    +   
Sbjct: 368 EAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLM 427

Query: 312 -----RYYEDGSDDDEDENDDNNSGV---RIAYGVQLKPWL---DPKALANTLDEWSPE- 359
                 Y +DG+   E  N+  NSG+      YG+ +       + K   N L+E   E 
Sbjct: 428 QGHFQHYDKDGA--FELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEG 485

Query: 360 -------VVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAY-------------- 398
                     L+          L C+ L +          FC+ +               
Sbjct: 486 LKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAE 545

Query: 399 -------QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY 451
                  + G   D +    ++    +  ++E  D+L+ ++ + G++    T   +++ Y
Sbjct: 546 EYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGY 605

Query: 452 GISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
             S   +         +++ G   K     +Y  ++R L++ +    A  VL E+  +G+
Sbjct: 606 FKSNDHEKVSSIL---QSMLGSGDKPD-NHIYGIVIRNLSRSENMEVAFMVLTEVEKNGL 661

Query: 512 VPDVQTFSGLMYHFALQGD-EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           VPD+  +S L+       D EK V  L  M ++ G+EP    +  LI  +C+
Sbjct: 662 VPDLHIYSSLISGLCKMADMEKAVGLLDEMAKE-GLEPGIVCYNALIDGFCR 712



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 90/220 (40%), Gaps = 16/220 (7%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G + D +    ++  L + G ++    L+ ++   G++        ++D +    KA  A
Sbjct: 310 GLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEA 369

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
               ++   +   +   K+M  Y +L+R L K  +   A  +L EMI  G  PD  T+  
Sbjct: 370 FDILNE--MISAGVQPNKIM--YDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHP 425

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSN 568
           LM       D+    +L + +R +G+ P+AY + ++I   C+             + +  
Sbjct: 426 LMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEG 485

Query: 569 LMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
           L P+A     L     KEG    A    E   K N +P L
Sbjct: 486 LKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDL 525



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 12/120 (10%)

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A  +L EM  SGI+P+  T+  ++      G+ K    L   +   G++P+A+M+  LI 
Sbjct: 439 AFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLII 498

Query: 559 AY---------CKYLSN---SNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
            +         C+ L N   +N++PD      L K L   GR +EA     + +K   VP
Sbjct: 499 GHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVP 558



 Score = 46.6 bits (109), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 105/258 (40%), Gaps = 27/258 (10%)

Query: 80  PNADSALSIMEA-LKSNPNFSHNQSTLHALATVLAKSQR--NHELKTLIGDISSSKFLNV 136
           PNAD+   ++E   KSN     ++     L ++L    +  NH    +I ++S S+  N+
Sbjct: 593 PNADTYTDLLEGYFKSN----DHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSE--NM 646

Query: 137 SVNFMNL-----------MQWYST--SG-----DLELVLSTWNEYRQRAKLLSTESYNIV 178
            V FM L           +  YS+  SG     D+E  +   +E  +         YN +
Sbjct: 647 EVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNAL 706

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI 238
           +  + ++G    A   F  ++ +G +PN  TYT +I+     G +  A +++  +    I
Sbjct: 707 IDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGI 766

Query: 239 KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEF 298
              +  Y +L  G       ++A  L  EM + G          +    + G +Q   + 
Sbjct: 767 APDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYAHVSLFSTLVRGFCKRGRLQETEKL 826

Query: 299 LREMLPDKRIKNVRYYED 316
           L  M+  + + N +  E+
Sbjct: 827 LHVMMDREIVPNAQTVEN 844



 Score = 46.2 bits (108), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 39/195 (20%), Positives = 78/195 (40%), Gaps = 1/195 (0%)

Query: 81  NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNF 140
           + D A  ++  ++ N     N  T   +   L ++  + E   L+ ++ S      +  +
Sbjct: 435 DKDGAFELLNEMR-NSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMY 493

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
             L+  +S  G + L   +     +   L     YN ++   +  G+  EA E + QV  
Sbjct: 494 APLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQK 553

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
            G +P+  TY+ +I        L+ A ++   +    +K  +  Y  L+EG+      ++
Sbjct: 554 RGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEK 613

Query: 261 AKSLLNEMRDDGKFP 275
             S+L  M   G  P
Sbjct: 614 VSSILQSMLGSGDKP 628



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 39/81 (48%)

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
           +YSSL+  L K      A+ +L+EM   G+ P +  ++ L+  F   GD    + +F  +
Sbjct: 667 IYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSI 726

Query: 542 RQNGVEPDAYMFKVLIQAYCK 562
              G+ P+   +  LI   CK
Sbjct: 727 LAKGLLPNCVTYTALIDGNCK 747



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 4/151 (2%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           +L  L R   +ELV +L   +   G+     T    ++ +  ++  DAA K F + R   
Sbjct: 216 LLKDLLRADAMELVWKLKGFMEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRD 275

Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
             +++    ++ S L R+        +A    EEM+  G+ PD  T+  LM      G  
Sbjct: 276 CAMNEVTYNVMISGLCRSGAV----EEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRL 331

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           K  + L   +  +G++P+  ++  L+  + K
Sbjct: 332 KEAKALLDEMSCSGLKPNVVVYATLVDGFMK 362


>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Glycine max]
          Length = 1476

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 120/257 (46%), Gaps = 18/257 (7%)

Query: 69  PFIVTH-----ALRSAPNADSALSI---MEALKSNPNFSHNQSTLHALATVLAKSQRNHE 120
           P I+T+     A     N + A+++   ME+ +  P+      T +A+ +V  +  R  +
Sbjct: 319 PDIITYNTLISACSRESNLEEAVAVFSDMESHRCQPDLW----TYNAMISVYGRCARARK 374

Query: 121 LKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS 180
            + L  ++ S  F   +V + +L+  +S  G+ E V     E  +R       +YN ++ 
Sbjct: 375 AEELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIH 434

Query: 181 VYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR 240
           +Y K G++ +A++ +R +   G  P++ TYTV+I+ L    K++ A  V S +    +K 
Sbjct: 435 MYGKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDAGVKP 494

Query: 241 TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALE---RMQEMGFIQGA- 295
           T   Y  L+  +    + +EA+   N MR  G  P R A  V L+   R  EM    G  
Sbjct: 495 TLHTYSALICAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVMLDFFLRFNEMKKAMGLY 554

Query: 296 NEFLRE-MLPDKRIKNV 311
           +E +RE   PD  +  V
Sbjct: 555 HEMIREGFTPDNGLYEV 571



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 81/163 (49%), Gaps = 4/163 (2%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G+  D      +L   +R G+ E V  +  ++   G      T   II  YG   + D A
Sbjct: 386 GFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQA 445

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           ++ + D ++      +    + Y+ L+ +L K  +  +A NV+ EM+ +G+ P + T+S 
Sbjct: 446 MQIYRDMKS----SGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDAGVKPTLHTYSA 501

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY 563
           L+  +A  G  +  ++ F+ +R++G++PD   + V++  + ++
Sbjct: 502 LICAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVMLDFFLRF 544



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 90/210 (42%), Gaps = 20/210 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVE--LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           G   D+ +   ++    + G +E  L  +L+ ++R  G+R    T   +I         +
Sbjct: 279 GCVPDLVSFNTLINARMKSGAMEPNLALQLLNEVRRSGIRPDIITYNTLISACSRESNLE 338

Query: 459 AALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
            A+  F D +   C P      +  Y++++    +C R   A  + +E+   G  PD  T
Sbjct: 339 EAVAVFSDMESHRCQPD-----LWTYNAMISVYGRCARARKAEELFKELESKGFFPDAVT 393

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LS 565
           ++ L+Y F+ +G+ + V+ +   + + G   D   +  +I  Y K             + 
Sbjct: 394 YNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMK 453

Query: 566 NSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
           +S   PDA T  +L  SL K  + +EAA V
Sbjct: 454 SSGRNPDAVTYTVLIDSLGKASKVEEAANV 483



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 170/408 (41%), Gaps = 52/408 (12%)

Query: 164  RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
            RQR   +  + +N ++  YA +G    A   F  ++ +G  P   +   +++ L+   +L
Sbjct: 801  RQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMRDGPSPTVDSVNGLLQALIVDRRL 860

Query: 224  DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVA 282
            +    V   L  M +K +    L+ +E F       E + + N M+  G FP     R+ 
Sbjct: 861  NELYVVIQELQDMGLKISKSSILLTLEAFAQAGNLFEVQKIYNGMKAAGYFPTMHVYRIM 920

Query: 283  LERMQEMGFIQGANEFLREM-----LPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYG 337
            L  + +   ++     L EM      PD +I                    NS +++  G
Sbjct: 921  LRLLCKCKRVRDVETMLCEMEEAGFQPDLQI-------------------CNSILKLYLG 961

Query: 338  VQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLV--CKVLRHFKSPETAWHFFCW 395
            ++     D K++     +   +  SL  D +  + T ++  C+  R    PE  +     
Sbjct: 962  IE-----DFKSMGIIYQKI--QDASLKPDEE-TYNTLIIMYCRDRR----PEEGFSLMNK 1009

Query: 396  VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY---G 452
            +    G    +     ++T   +    E  + L  +LRS+G +L  +   L++  Y   G
Sbjct: 1010 MR-SLGLEPKLDTYRSLITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLMMKTYRTSG 1068

Query: 453  ISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV 512
              +KA+  L A   +  +   IS   L+++      +  K  +  +A NVL+ +  +G+V
Sbjct: 1069 DHRKAENLL-AIMKESGIEPTISTMHLLMV------SYGKSGQPEEAENVLKNLRTTGVV 1121

Query: 513  PDVQTFSGLMYHFALQGDEKI-VQKLFSMVRQNGVEPDAYMFKVLIQA 559
             D   +S ++  +  +GD K  ++KL  M ++ G+EPD  ++   I+A
Sbjct: 1122 LDTLPYSSVIDAYLKKGDFKAGIEKLTEM-KEAGIEPDHRIWTCFIRA 1168



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 65/135 (48%), Gaps = 4/135 (2%)

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLL 487
           +I +L+  G+++  S+I L ++ +  +       K ++  +        F  M +Y  +L
Sbjct: 866 VIQELQDMGLKISKSSILLTLEAFAQAGNLFEVQKIYNGMKA----AGYFPTMHVYRIML 921

Query: 488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE 547
           R L KCKR  D   +L EM  +G  PD+Q  + ++  +    D K +  ++  ++   ++
Sbjct: 922 RLLCKCKRVRDVETMLCEMEEAGFQPDLQICNSILKLYLGIEDFKSMGIIYQKIQDASLK 981

Query: 548 PDAYMFKVLIQAYCK 562
           PD   +  LI  YC+
Sbjct: 982 PDEETYNTLIIMYCR 996



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 89/218 (40%), Gaps = 38/218 (17%)

Query: 401  GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY--------- 451
            GY   ++    ML +L +   V  V+ ++ ++   G +        I+  Y         
Sbjct: 909  GYFPTMHVYRIMLRLLCKCKRVRDVETMLCEMEEAGFQPDLQICNSILKLYLGIEDFKSM 968

Query: 452  GI--SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS 509
            GI   K  DA+LK   D+ T             Y++L+    + +R  +  +++ +M   
Sbjct: 969  GIIYQKIQDASLKP--DEET-------------YNTLIIMYCRDRRPEEGFSLMNKMRSL 1013

Query: 510  GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY--------- 560
            G+ P + T+  L+  F  Q   +  ++LF  +R NG + D   + ++++ Y         
Sbjct: 1014 GLEPKLDTYRSLITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLMMKTYRTSGDHRKA 1073

Query: 561  ---CKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
                  +  S + P  +T  LL  S  K G+ +EA  V
Sbjct: 1074 ENLLAIMKESGIEPTISTMHLLMVSYGKSGQPEEAENV 1111



 Score = 43.1 bits (100), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 106/269 (39%), Gaps = 16/269 (5%)

Query: 19  LQTRSFVRAPFTNKLAL-----YLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLD----P 69
           L  RS  R    NKLAL     +  R + +    LA++S     ++ +L +R +      
Sbjct: 125 LGRRSKTRVKKMNKLALKRDKNWRERVKYLTDTILALKSE--EFVAGVLEERRVQMTPTD 182

Query: 70  FIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDIS 129
           F          N   AL + E L     ++ N   +  +  VL K+ +      +     
Sbjct: 183 FCFVVKWVGQQNWQRALELYECLNLRHWYAPNARMVATILGVLGKANQEALAVEIFARAE 242

Query: 130 SSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG--- 186
           SS    V V +  +M  Y+ +G    V    +  R+R  +    S+N +++   K+G   
Sbjct: 243 SSVGDTVQV-YNAMMGVYARNGRFSKVKELLDLMRERGCVPDLVSFNTLINARMKSGAME 301

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
            N  A++   +V   G  P+  TY  +I        L+ A+ VFS +   R +     Y 
Sbjct: 302 PNL-ALQLLNEVRRSGIRPDIITYNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTYN 360

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            ++  +    R  +A+ L  E+   G FP
Sbjct: 361 AMISVYGRCARARKAEELFKELESKGFFP 389



 Score = 42.4 bits (98), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 44/232 (18%), Positives = 97/232 (41%), Gaps = 16/232 (6%)

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L+ ++  S      + +  L+   S   +LE  ++ +++           +YN ++SVY 
Sbjct: 308 LLNEVRRSGIRPDIITYNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTYNAMISVYG 367

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           +  +  +A E F+++  +G  P++ TY  ++      G  +   ++   +      +   
Sbjct: 368 RCARARKAEELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEM 427

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREM 302
            Y  ++  +    R D+A  +  +M+  G+ P      V ++ + +   ++ A   + EM
Sbjct: 428 TYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEM 487

Query: 303 LPDKRIKN---------VRYYEDGSDDDEDE--NDDNNSGV---RIAYGVQL 340
           L D  +K            Y + G  ++ +E  N    SG+   R+AY V L
Sbjct: 488 L-DAGVKPTLHTYSALICAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVML 538



 Score = 40.4 bits (93), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 6/136 (4%)

Query: 428  LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL-MLLYSSL 486
            L+ K+RS G+     T R +I  +   +  + A + F + R+     + +KL    Y  +
Sbjct: 1006 LMNKMRSLGLEPKLDTYRSLITAFNKQRMYEQAEELFEELRS-----NGYKLDRAFYHLM 1060

Query: 487  LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
            ++T         A N+L  M  SGI P + T   LM  +   G  +  + +   +R  GV
Sbjct: 1061 MKTYRTSGDHRKAENLLAIMKESGIEPTISTMHLLMVSYGKSGQPEEAENVLKNLRTTGV 1120

Query: 547  EPDAYMFKVLIQAYCK 562
              D   +  +I AY K
Sbjct: 1121 VLDTLPYSSVIDAYLK 1136



 Score = 40.0 bits (92), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 36/189 (19%), Positives = 80/189 (42%), Gaps = 4/189 (2%)

Query: 84   SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL 143
            S ++ M +L   P       T  +L T   K +   + + L  ++ S+ +      +  +
Sbjct: 1005 SLMNKMRSLGLEPKLD----TYRSLITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLM 1060

Query: 144  MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
            M+ Y TSGD     +     ++     +  + +++M  Y K+G+  EA    + +   G 
Sbjct: 1061 MKTYRTSGDHRKAENLLAIMKESGIEPTISTMHLLMVSYGKSGQPEEAENVLKNLRTTGV 1120

Query: 204  IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
            + ++  Y+ +I+  +  G   + +E  + +    I+   + +   +      E  +EA  
Sbjct: 1121 VLDTLPYSSVIDAYLKKGDFKAGIEKLTEMKEAGIEPDHRIWTCFIRAATLSEGTNEAIV 1180

Query: 264  LLNEMRDDG 272
            LLN ++D G
Sbjct: 1181 LLNALQDAG 1189


>gi|218184371|gb|EEC66798.1| hypothetical protein OsI_33201 [Oryza sativa Indica Group]
          Length = 520

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 3/166 (1%)

Query: 68  DPFIVTHALRSAPNADSALSIME-ALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           D   V   L++ P    A      A  +   F H++ T  ++  +L ++ R   +  L+ 
Sbjct: 66  DSHTVARVLKAHPPLHKAFLFFRLAAGAGGGFRHDRFTYTSMLHLLGEAGRVPAMMRLLA 125

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR-AKLLST-ESYNIVMSVYAK 184
           ++  +     +  F  +M W + +GD++  +  W E R R  K   T  SY   + +   
Sbjct: 126 EMLRAGVDPDAATFTTVMHWLAHAGDVDAAMRVWEEMRARKGKCRPTLVSYTACVKILFD 185

Query: 185 TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
            G+  EA E F++++ EG  P+ +TYTV+IEHL N+GK ++ +E+ 
Sbjct: 186 AGRPAEAREVFQEMVAEGLRPSCKTYTVLIEHLANVGKFEATMEIM 231



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 101/216 (46%), Gaps = 4/216 (1%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVA-YQPGYTHDVYALEKMLT 414
           WS     LL+     W +  V +VL+       A+ FF   A    G+ HD +    ML 
Sbjct: 50  WSAARPLLLSLPGLAWDSHTVARVLKAHPPLHKAFLFFRLAAGAGGGFRHDRFTYTSMLH 109

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI 474
           +L   G V  + RL+A++   G+    +T   ++ +   +   DAA++ + + R   G  
Sbjct: 110 LLGEAGRVPAMMRLLAEMLRAGVDPDAATFTTVMHWLAHAGDVDAAMRVWEEMRARKGKC 169

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
                ++ Y++ ++ L    R  +A  V +EM+  G+ P  +T++ L+ H A  G  +  
Sbjct: 170 RP--TLVSYTACVKILFDAGRPAEAREVFQEMVAEGLRPSCKTYTVLIEHLANVGKFEAT 227

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM 570
            ++   +++ GVEPD  +  +L+Q  C     +++M
Sbjct: 228 MEIMDKMQEAGVEPDKALCNILVQK-CSRACETSVM 262


>gi|115481668|ref|NP_001064427.1| Os10g0358700 [Oryza sativa Japonica Group]
 gi|110288952|gb|AAP53278.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|110288953|gb|ABG66030.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113639036|dbj|BAF26341.1| Os10g0358700 [Oryza sativa Japonica Group]
 gi|215712262|dbj|BAG94389.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215715192|dbj|BAG94943.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 548

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 83/169 (49%), Gaps = 3/169 (1%)

Query: 68  DPFIVTHALRSAPNADSALSIME-ALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           D   V   L++ P    A      A  +   F H++ T  ++  +L ++ R   +  L+ 
Sbjct: 66  DSHTVARVLKAHPPLHKAFLFFRLAAGAGGGFRHDRFTYTSMLHLLGEAGRVPAMMRLLA 125

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR-AKLLST-ESYNIVMSVYAK 184
           ++  +     +  F  +M W + +GD++  +  W E R R  K   T  SY   + +   
Sbjct: 126 EMLRAGVDPDAATFTTVMHWLAHAGDVDAAMRVWEEMRARKGKCRPTLVSYTACVKILFD 185

Query: 185 TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
            G+  EA E F++++ EG  P+ +TYTV+IEHL N+GK ++ +E+   +
Sbjct: 186 AGRPAEAREVFQEMVAEGLRPSCKTYTVLIEHLANVGKFEATMEIMDKM 234



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 101/216 (46%), Gaps = 4/216 (1%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVA-YQPGYTHDVYALEKMLT 414
           WS     LL+     W +  V +VL+       A+ FF   A    G+ HD +    ML 
Sbjct: 50  WSAARPLLLSLPGLAWDSHTVARVLKAHPPLHKAFLFFRLAAGAGGGFRHDRFTYTSMLH 109

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI 474
           +L   G V  + RL+A++   G+    +T   ++ +   +   DAA++ + + R   G  
Sbjct: 110 LLGEAGRVPAMMRLLAEMLRAGVDPDAATFTTVMHWLAHAGDVDAAMRVWEEMRARKGKC 169

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
                ++ Y++ ++ L    R  +A  V +EM+  G+ P  +T++ L+ H A  G  +  
Sbjct: 170 RP--TLVSYTACVKILFDAGRPAEAREVFQEMVAEGLRPSCKTYTVLIEHLANVGKFEAT 227

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM 570
            ++   +++ GVEPD  +  +L+Q  C     +++M
Sbjct: 228 MEIMDKMQEAGVEPDKALCNILVQK-CSRAGETSVM 262


>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
          Length = 1263

 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 117/554 (21%), Positives = 223/554 (40%), Gaps = 87/554 (15%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           V HALRSA     AL    +    P  +   ++ + +  ++    R  ++  +  D+   
Sbjct: 185 VIHALRSADGPAEALERFRSAARKPRVAQTTASCNYMLELMRGHGRVGDMAEVF-DVMQR 243

Query: 132 KFLNVSVN-FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           + +  +V  F  +       G L          ++   +L+  +YN ++    K+G + E
Sbjct: 244 QIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDRE 303

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK---LDSALEVFSALPLMRIKRTSKQYLI 247
           A+E +R ++ +G +P+ RTY+V+   +V  GK   +++ L +   +    +K     Y I
Sbjct: 304 ALEVYRVMMVDGVVPSVRTYSVL---MVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTI 360

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR-VALERMQEMGFIQGANE-FLREMLPD 305
            +      +RFDEA  +L +M ++G  P      V ++ + + G I  A + F +    D
Sbjct: 361 CIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSD 420

Query: 306 KRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLA 365
           ++   V Y      D   +N D+ S + I        W   KA     D ++  VV+  A
Sbjct: 421 QKPDRVTYIT--LLDKFGDNGDSQSVMEI--------WNAMKA-----DGYNDNVVAYTA 465

Query: 366 DAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELV 425
                     +C+V R F++ E           Q G   + Y+   +++   +       
Sbjct: 466 ------VIDALCQVGRVFEALEMFDEM-----KQKGIVPEQYSYNSLISGFLKADRFGDA 514

Query: 426 DRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSS 485
             L   +   G +    T  L I++YG   K+  ++KA          I +++LM     
Sbjct: 515 LELFKHMDIHGPKPNGYTHVLFINYYG---KSGESIKA----------IQRYELM----- 556

Query: 486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
                 K K               GIVPDV   + +++  A  G   + +++F  ++  G
Sbjct: 557 ------KSK---------------GIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMG 595

Query: 546 VEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
           V PD   + ++I+   K             +  +N +PD      L  +L+K GR  EA 
Sbjct: 596 VSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAW 655

Query: 594 AVEERCEKINDVPS 607
            +  + +++N  P+
Sbjct: 656 RIFYQLKEMNLEPT 669



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 84/172 (48%)

Query: 104  TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
            T + + + L KS+R  +   L  ++ S  F      +  L+     +G +E   + +NE 
Sbjct: 952  TYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEM 1011

Query: 164  RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
             +     +   YNI+++ +   G   +    F+ ++D+G  P+ ++YT++I+ L   G+L
Sbjct: 1012 LEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQL 1071

Query: 224  DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            +  L  F  L  M ++     Y +L++G    +R +EA SL NEM+  G  P
Sbjct: 1072 NDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVP 1123



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 94/481 (19%), Positives = 176/481 (36%), Gaps = 73/481 (15%)

Query: 174  SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
            +YN +++   + GK  E +    ++      PN  TY  +++ L   G ++ AL++  ++
Sbjct: 672  TYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSM 731

Query: 234  PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA-MRVALERMQEMGFI 292
                       Y  ++ G V  ER++EA S+  +M+     P  A +   L    ++G +
Sbjct: 732  TTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKV-LIPDYATLCTILPSFVKIGLM 790

Query: 293  QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
            + A   +++           + + GS  D         G+    G+              
Sbjct: 791  KEALHIIKDY----------FLQPGSKTDRSSCHSLMEGILKKAGI-------------- 826

Query: 353  LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW--HFFCWVAYQPGYTHDVYALE 410
              E S E   ++A +        +C +++H    + A   H         G +       
Sbjct: 827  --EKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYN 884

Query: 411  KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD---- 466
             ++  L     +++ + L A+++  G      T  L++D  G S + +  LK   +    
Sbjct: 885  SLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRK 944

Query: 467  ---------DRTLCGPISK----------FKLM--------LLYSSLLRTLTKCKRDFDA 499
                     +  + G +            + LM          Y  LL  L K  R  DA
Sbjct: 945  GYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDA 1004

Query: 500  INVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
             N+  EM+  G   +   ++ L+    + G+ + V  LF  +   G+ PD   + ++I  
Sbjct: 1005 ENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDT 1064

Query: 560  YCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
             CK             L    L PD  T  LL   L K  R +EA ++    +K   VP+
Sbjct: 1065 LCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPN 1124

Query: 608  L 608
            L
Sbjct: 1125 L 1125



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 83/200 (41%), Gaps = 8/200 (4%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I    L  A   D A  I+  ++ N     +  T   L  VL  + R  + K +   +  
Sbjct: 360 ICIRVLGQAKRFDEAYRILAKME-NEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKK 418

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           S      V ++ L+  +  +GD + V+  WN  +      +  +Y  V+    + G+ FE
Sbjct: 419 SDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFE 478

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV- 249
           A+E F ++  +G +P   +Y  +I   +   +   ALE+F  + +   K     +++ + 
Sbjct: 479 ALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFIN 538

Query: 250 ------EGFVGVERFDEAKS 263
                 E    ++R++  KS
Sbjct: 539 YYGKSGESIKAIQRYELMKS 558



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 45/102 (44%)

Query: 174  SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
            +YN+++    K+ +  EAV  F ++  +G +PN  TY  +I HL   GK   A +++  L
Sbjct: 1092 TYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEEL 1151

Query: 234  PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                 K     Y  L+ G+      D A +    M   G  P
Sbjct: 1152 LTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLP 1193



 Score = 39.7 bits (91), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 46/96 (47%)

Query: 138  VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
            + +  L+     S  LE  +S +NE +++  + +  +YN ++    K GK  EA + + +
Sbjct: 1091 ITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEE 1150

Query: 198  VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
            ++ +G  PN  TY  +I      G  DSA   +  +
Sbjct: 1151 LLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRM 1186


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 109/518 (21%), Positives = 204/518 (39%), Gaps = 78/518 (15%)

Query: 71  IVTHALRSAPNADSALSI---MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD 127
            + ++L  A   ++AL +   M+A    PN      T + L   L K+ +  E   L+ +
Sbjct: 49  CLINSLGRAGKWEAALEVVAEMQAKGCKPNLW----TYNTLVDCLGKAGQFDEALRLLAE 104

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           +  +  +     +  L+     +G L    + + E R+R  +  T +YN ++    K G+
Sbjct: 105 MRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGR 164

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
           + +A+E   ++   G  P+  TY+ +I  L   G+   A ++F  +     K  S  +  
Sbjct: 165 SQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTA 224

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDK 306
           L++      R D+A  LL+EM++ G  PG     AL     ++G +  A   L EM   K
Sbjct: 225 LMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEM---K 281

Query: 307 RIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLAD 366
           R        +G   D            + Y   +   +     A+ LDE           
Sbjct: 282 R--------NGCKPD-----------VVTYSCLITGLIK----ASQLDE----------- 307

Query: 367 AKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVD 426
                     C+VL+  +              + G   D      ++  L + G +    
Sbjct: 308 ---------ACQVLKKME--------------KEGCPPDTITYNTLINGLGKAGLLNDAG 344

Query: 427 RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSL 486
           RL  +++S G      T   +I   G + + ++A   F +  +    +     +  Y S+
Sbjct: 345 RLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMES----VGIQPDLFTYCSI 400

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           +  L K  +  DA  +  EM   G+ PDV T++  +      G  K  +K+F  ++++G+
Sbjct: 401 ITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGL 460

Query: 547 EPDAYMFKVLIQAYCKYLSNSNLMPDAAT--KELLKKS 582
            PD   +  L+      LS +  + DA    KEL+++ 
Sbjct: 461 LPDVATYDALLLG----LSKTKEVDDACGLLKELIEQG 494



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 92/399 (23%), Positives = 158/399 (39%), Gaps = 48/399 (12%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN +++  AK G+  EA   F ++      P+  +Y+ +I  L   GK ++ALEV + +
Sbjct: 11  TYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEM 70

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFI 292
                K     Y  LV+      +FDEA  LL EMRD+G  P  R     +  + + G +
Sbjct: 71  QAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRL 130

Query: 293 QGANEFLREM-----LPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPK 347
             A     EM     +PD    N   Y  G               R    ++L   ++  
Sbjct: 131 SEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVG------------RSQKAMELLEEMERH 178

Query: 348 ALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY 407
                +  +S  +  L  D + V   +L  ++ R  + P                  D  
Sbjct: 179 GCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKP------------------DSI 220

Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH-- 465
               ++  L + G V+    L+ +++  G++    T   +I  +G   K    ++A++  
Sbjct: 221 TFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFG---KVGDLVEAYNLL 277

Query: 466 DD--RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
           D+  R  C P      ++ YS L+  L K  +  +A  VL++M   G  PD  T++ L+ 
Sbjct: 278 DEMKRNGCKPD-----VVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLIN 332

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
                G      +LF  ++  G  PD   +  LI A  K
Sbjct: 333 GLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGK 371



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 80/177 (45%)

Query: 99  SHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLS 158
           S N  T ++L   LAK+ +  E + L  ++ ++K+    V++  L+     +G  E  L 
Sbjct: 6   SPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALE 65

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
              E + +    +  +YN ++    K G+  EA+    ++ D G +P+ RTY  +I  L 
Sbjct: 66  VVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLG 125

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             G+L  A  +F+ +        +  Y  L+ G   V R  +A  LL EM   G  P
Sbjct: 126 KAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPP 182



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/272 (20%), Positives = 107/272 (39%), Gaps = 23/272 (8%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNP 96
           LI ++  A R + + +L + + +R   P   T+      L     +  A+ ++E ++ + 
Sbjct: 120 LISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERH- 178

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
               +  T  +L T L K     +   L  ++        S+ F  LM     +G ++  
Sbjct: 179 GCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDA 238

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           L   +E ++R       +YN +++ + K G   EA     ++   G  P+  TY+ +I  
Sbjct: 239 LELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITG 298

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP- 275
           L+   +LD A +V   +        +  Y  L+ G       ++A  L + M+  G  P 
Sbjct: 299 LIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPD 358

Query: 276 -----------GRAMRVA-----LERMQEMGF 291
                      G+A RV       E M+ +G 
Sbjct: 359 VVTYSTLITALGKAARVESACVLFEEMESVGI 390



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 82/211 (38%), Gaps = 18/211 (8%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D +    ++  L + G  +    L+ ++   G      T   +I   G   +   A
Sbjct: 144 GCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKA 203

Query: 461 LKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
            K F +  R    P S     + +++L+  L K  R  DA+ +L+EM   G+ P V T++
Sbjct: 204 FKLFQEMKRRGRKPDS-----ITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYN 258

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY---------C---KYLSNS 567
            L+  F   GD      L   +++NG +PD   +  LI            C   K +   
Sbjct: 259 ALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKE 318

Query: 568 NLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
              PD  T   L   L K G   +A  + +R
Sbjct: 319 GCPPDTITYNTLINGLGKAGLLNDAGRLFDR 349



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 88/217 (40%), Gaps = 23/217 (10%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   DV     ++T L +   ++   +++ K+  +G      T   +I+  G +   + A
Sbjct: 284 GCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDA 343

Query: 461 LKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
            + F   ++  C P      ++ YS+L+  L K  R   A  + EEM   GI PD+ T+ 
Sbjct: 344 GRLFDRMKSKGCNPD-----VVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYC 398

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNS 567
            ++      G      +LFS +R  G+ PD   +   + +  +             +  S
Sbjct: 399 SIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKES 458

Query: 568 NLMPDAATKELLKKSLWKEGRRKEAAA-----VEERC 599
            L+PD AT + L   L K     +A       +E+ C
Sbjct: 459 GLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGC 495



 Score = 46.2 bits (108), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 46/225 (20%), Positives = 95/225 (42%), Gaps = 26/225 (11%)

Query: 40  AQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKS 94
             +I  +  A + + ++ L S +  + L P ++T+     +L        A  I E +K 
Sbjct: 398 CSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKE 457

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
           +     + +T  AL   L+K++   +   L+ ++        S+ F   ++         
Sbjct: 458 S-GLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLE--------- 507

Query: 155 LVLSTWNEYRQRAKLL----------STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204
            +L++W    +  +LL             SYN ++   AK G+  EA  T   + ++G  
Sbjct: 508 -ILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGK 566

Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV 249
           P+  +Y+ +I  L   G++D+A E+   +    +K + + Y  LV
Sbjct: 567 PDIVSYSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLV 611



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 12/138 (8%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS L+ +L +  +   A+ V+ EM   G  P++ T++ L+      G      +L + +R
Sbjct: 47  YSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMR 106

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
            NG  PD   +  LI    K             +     +PD  T   L   L K GR +
Sbjct: 107 DNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQ 166

Query: 591 EAAAVEERCEKINDVPSL 608
           +A  + E  E+    P +
Sbjct: 167 KAMELLEEMERHGCPPDV 184



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 12/125 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y+SLL  L K  +  +A  + EE+  +   PDV ++S L+      G  +   ++ +
Sbjct: 9   VVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVA 68

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEG 587
            ++  G +P+ + +  L+    K             + ++  +PD  T   L  +L K G
Sbjct: 69  EMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAG 128

Query: 588 RRKEA 592
           R  EA
Sbjct: 129 RLSEA 133


>gi|356508608|ref|XP_003523047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Glycine max]
          Length = 879

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 103/253 (40%), Gaps = 18/253 (7%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
           W P     L +  F        ++L+  +    A  FFCW+  QPG+ HD +    M+ I
Sbjct: 333 WGPATEKTLYNLNFSIDAYQANQILKQLQDHSVAVGFFCWLKRQPGFWHDGHTYTTMVGI 392

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPI 474
           L R      +++L+ ++  DG +    T   +I  YG +     AL  F+  + + C P 
Sbjct: 393 LGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLREALNVFNQMQEMGCEPD 452

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
                 + Y +L+    K      A+++ E M   G+ PD  T+S ++      G+    
Sbjct: 453 R-----VTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSAA 507

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKS 582
            +LF  +   G  P+   + +LI    K             + N+   PD  T  ++ + 
Sbjct: 508 HRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALELYRDMQNAGFKPDKVTYSIVMEV 567

Query: 583 LWKEGRRKEAAAV 595
           L   G  +EA AV
Sbjct: 568 LGHCGYLEEAEAV 580



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/248 (19%), Positives = 102/248 (41%), Gaps = 6/248 (2%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           +D +     L+   +   A+     LK  P F H+  T   +  +L +++    +  L+ 
Sbjct: 348 IDAYQANQILKQLQDHSVAVGFFCWLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLE 407

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
            +         V +  L+  Y  +  L   L+ +N+ ++        +Y  ++ ++AK G
Sbjct: 408 QMVKDGCQPNVVTYNRLIHSYGRANYLREALNVFNQMQEMGCEPDRVTYCTLIDIHAKAG 467

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
               A+  + ++ + G  P++ TY+VMI  L   G L +A  +F  +           Y 
Sbjct: 468 FLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYN 527

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM--- 302
           IL+        +  A  L  +M++ G  P +    + +E +   G+++ A     EM   
Sbjct: 528 ILIALQAKARNYQTALELYRDMQNAGFKPDKVTYSIVMEVLGHCGYLEEAEAVFFEMRQN 587

Query: 303 --LPDKRI 308
             +PD+ +
Sbjct: 588 HWVPDEPV 595


>gi|357150350|ref|XP_003575429.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Brachypodium distachyon]
          Length = 684

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 123/579 (21%), Positives = 216/579 (37%), Gaps = 78/579 (13%)

Query: 67  LDPFIVTHALRSAPNADSALSI---MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT 123
           L P  V   LR A   D  L +   + A +   +F+ + S   AL   L +         
Sbjct: 68  LGPRFVVRVLRGAAPLDPHLCVRLYVWASRFGAHFARDASVRRALEDALWRRGPAVLSAA 127

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKL---LSTESYNIVMS 180
           L+ ++   +     V+   L    ++ G L L       + Q  +L    ST  YN ++ 
Sbjct: 128 LVAEV---RGCGCEVSEELLRALIASWGRLGLAQYAHEVFVQMPRLGLRPSTAVYNALIV 184

Query: 181 VYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR 240
              + G    A   F+Q+  +G  P+  TY  ++  +   G +D AL +   +    I+ 
Sbjct: 185 ASVRAGAVDTAYLRFQQMPADGCQPDCFTYNTLVHGVCQRGIIDEALRLVRQMEGAGIRP 244

Query: 241 TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP------------------------- 275
               Y +LV+GF    R ++A  + + M++ G  P                         
Sbjct: 245 NVFTYTMLVDGFCNAGRPEDAVHVFDTMKEKGVSPNEASYRTLVHGAFRCLGRHKAYVML 304

Query: 276 ----GRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSG 331
               GR         Q M +    NE  +E++   +  N R Y           D+   G
Sbjct: 305 TEWLGREPPPHHSAWQCMLYCLSKNEMAKEVVEVTKKMNSRGYLL---------DNAIFG 355

Query: 332 VRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWH 391
           + ++  V+    L+   L   LD++  +  +   D        +V K L   KS   A H
Sbjct: 356 IVVSCAVKC---LELSDLCGLLDDFVKKGGNPGFDVYI-----MVIKSLLGCKSSSKANH 407

Query: 392 FFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY 451
           +   +    G    V +   ++    + G V+    +I ++R  G+     T   +I  Y
Sbjct: 408 YLKRMVLD-GLLSGVTSYNMVIDCFVKAGAVDKAAEIIKEMREKGVLPNLVTFNTLISGY 466

Query: 452 ---GISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF 508
              G    A A LK   +     G I     ++ ++SL+  L    +  DA +   EM  
Sbjct: 467 SKLGNVHNAKAVLKMLMEH----GLIPD---IITFTSLINGLCHTHQLDDAFDCFNEMAE 519

Query: 509 SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY----- 563
            G+ P+  T++ LM+     G       L + ++++G+ PDAY F   I ++C+      
Sbjct: 520 WGVRPNAHTYNVLMHALCSAGHVNKAIDLLNKMKKDGITPDAYSFNAPILSFCRMKKVDK 579

Query: 564 -------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
                  +    ++PD  T   L K+L  E R  EA  +
Sbjct: 580 ARNIFNAMLRLGVVPDNYTYNSLIKALCDERRIDEAKEI 618



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/172 (19%), Positives = 73/172 (42%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T + L +  +K    H  K ++  +     +   + F +L+     +  L+     +
Sbjct: 455 NLVTFNTLISGYSKLGNVHNAKAVLKMLMEHGLIPDIITFTSLINGLCHTHQLDDAFDCF 514

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           NE  +     +  +YN++M      G   +A++   ++  +G  P++ ++   I     +
Sbjct: 515 NEMAEWGVRPNAHTYNVLMHALCSAGHVNKAIDLLNKMKKDGITPDAYSFNAPILSFCRM 574

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
            K+D A  +F+A+  + +   +  Y  L++      R DEAK +L  M   G
Sbjct: 575 KKVDKARNIFNAMLRLGVVPDNYTYNSLIKALCDERRIDEAKEILLLMESSG 626



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 88/219 (40%), Gaps = 23/219 (10%)

Query: 354 DEWSPEVVSLLADAKFVWTTRLVCKVLRHFKS--PETAWHFFCWVA-YQPGYTHDVYALE 410
           ++W P + S  A A      R V +VLR      P      + W + +   +  D     
Sbjct: 51  EDWFPRLNSEFAAAMPRLGPRFVVRVLRGAAPLDPHLCVRLYVWASRFGAHFARDASVRR 110

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470
            +   L R G   L   L+A++R  G  +    +R +I  +G    A  A + F      
Sbjct: 111 ALEDALWRRGPAVLSAALVAEVRGCGCEVSEELLRALIASWGRLGLAQYAHEVF------ 164

Query: 471 CGPISKFKLML-----LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF 525
              +   +L L     +Y++L+    +      A    ++M   G  PD  T++ L++  
Sbjct: 165 ---VQMPRLGLRPSTAVYNALIVASVRAGAVDTAYLRFQQMPADGCQPDCFTYNTLVHGV 221

Query: 526 ALQGDEKIVQKLFSMVRQ---NGVEPDAYMFKVLIQAYC 561
             +G   I+ +   +VRQ    G+ P+ + + +L+  +C
Sbjct: 222 CQRG---IIDEALRLVRQMEGAGIRPNVFTYTMLVDGFC 257


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 111/501 (22%), Positives = 195/501 (38%), Gaps = 79/501 (15%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           + +L+  Y  + D+E     +    +R  +    SY  ++    + GK  EA+E + ++ 
Sbjct: 227 YTSLVLGYCRNDDVERACGVFCVMPRRNAV----SYTNLIHGLCEAGKLHEALEFWARMR 282

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           ++G  P  RTYTV++  L   G+   AL +F  +     +     Y +L++      R D
Sbjct: 283 EDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMD 342

Query: 260 EAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGS 318
           EA  +LNEM + G  P      AL     + G ++ A   L  M   K   NVR Y +  
Sbjct: 343 EALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNE-- 400

Query: 319 DDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDE--WSPEVVSLLADAKFVWTTRLV 376
                          I    + K      AL N + E   SP+VV+       +    +V
Sbjct: 401 --------------LICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVV 446

Query: 377 CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
               R F+           +  + G++ D +     +  L R G V    +++  L+   
Sbjct: 447 DSASRLFR-----------LMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKH 495

Query: 437 MRLPFSTIRLIIDFYGISKKADAALKAF----------------------------HDDR 468
           ++        +ID Y  + K + A   F                             D  
Sbjct: 496 VKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAM 555

Query: 469 TLCGPISKFKL---MLLYSSLLRTLTKCKRDFDAIN-VLEEMIFSGIVPDVQTFSGLMYH 524
            L   ++KF +   +  Y+ L+  + K + DFD  N +L  +I SG  P+V T++  +  
Sbjct: 556 LLVEDMAKFDVKPTLHTYNILVEEVLK-EYDFDRANEILNRLISSGYQPNVVTYTAFIKA 614

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY-CKYLSNS-----------NLMPD 572
           +  QG  +  +++   ++  GV  D++++ +LI AY C  L +S              P 
Sbjct: 615 YCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPS 674

Query: 573 AATKELLKKSLWKEGRRKEAA 593
             T  +L K L  E  +KE +
Sbjct: 675 YLTYSILMKHLVIEKHKKEGS 695



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 121/546 (22%), Positives = 198/546 (36%), Gaps = 75/546 (13%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + H L  A     AL     ++ +  F     T   L   L +S R  E  +L G++   
Sbjct: 261 LIHGLCEAGKLHEALEFWARMREDGCFP-TVRTYTVLVCALCESGRELEALSLFGEMRER 319

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
                   +  L+ +    G ++  L   NE  ++    S   +N ++  Y K G   +A
Sbjct: 320 GCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDA 379

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
           V     +  +   PN RTY  +I        +D A+ + + +   ++      Y  L+ G
Sbjct: 380 VGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHG 439

Query: 252 FVGVERFDEAKSLLNEMRDDGKFPGR----AMRVALERMQEMGFIQGANEFLREMLPDKR 307
              V   D A  L   M  DG  P +    A  V L RM  +G    A++ L E L +K 
Sbjct: 440 LCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVG---EAHQIL-ESLKEKH 495

Query: 308 IKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQL-KPWLDPKALANTL----------DEW 356
           +K   +      D   +        +I +   L K  L  + L N++           E 
Sbjct: 496 VKANEHAYTALIDGYCKAG------KIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEG 549

Query: 357 SPEVVSLLAD--AKF-VWTTR-----LVCKVLRH--FKSPETAWHFFCWVAYQPGYTHDV 406
             +   LL +  AKF V  T      LV +VL+   F       +      YQP    +V
Sbjct: 550 KVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQP----NV 605

Query: 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD 466
                 +      G +E  + ++ K++++G+ L      L+I+ YG     D+A      
Sbjct: 606 VTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRR 665

Query: 467 D-RTLCGPISKFKLMLLYSSLLRTLTKCKR----------------------------DF 497
              T C P       L YS L++ L   K                             DF
Sbjct: 666 MFGTGCEPS-----YLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDF 720

Query: 498 DAINVL-EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
               VL E+M   G VP++ T+S L+      G   +   L+  +R+ G+ P   +   L
Sbjct: 721 GITTVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSL 780

Query: 557 IQAYCK 562
           + + CK
Sbjct: 781 LSSCCK 786



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 86/205 (41%), Gaps = 36/205 (17%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           +V++ NL+     +G L   L  W   R+     +  +Y +++    ++G+  EA+  F 
Sbjct: 255 AVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFG 314

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS------------------------- 231
           ++ + G  PN  TYTV+I++L   G++D AL++ +                         
Sbjct: 315 EMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRG 374

Query: 232 -------ALPLMRIKRTS---KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-R 280
                   L LM  K+     + Y  L+ GF   +  D A +LLN+M +    P      
Sbjct: 375 MMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYN 434

Query: 281 VALERMQEMGFIQGANEFLREMLPD 305
             +  + E+G +  A+   R M+ D
Sbjct: 435 TLIHGLCEVGVVDSASRLFRLMIRD 459



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 102/250 (40%), Gaps = 8/250 (3%)

Query: 27  APFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHAL-RSAPNADSA 85
            PF   +  Y +R  + D++ +     S        N R  +  I      +S   A + 
Sbjct: 361 VPFNALIGSYCKRGMMEDAVGVLGLMESKKVCP---NVRTYNELICGFCRGKSMDRAMAL 417

Query: 86  LSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQ 145
           L+ M   K +P+     + +H L  V      +   + +I D  S      +  FM  + 
Sbjct: 418 LNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNA-FMVCLC 476

Query: 146 WYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP 205
                G+   +L +  E   +A   +  +Y  ++  Y K GK   A   F++++ E  +P
Sbjct: 477 RMGRVGEAHQILESLKEKHVKA---NEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLP 533

Query: 206 NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL 265
           NS T+ VMI+ L   GK+  A+ +   +    +K T   Y ILVE  +    FD A  +L
Sbjct: 534 NSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEIL 593

Query: 266 NEMRDDGKFP 275
           N +   G  P
Sbjct: 594 NRLISSGYQP 603



 Score = 45.8 bits (107), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 9/231 (3%)

Query: 50  VRSNSSNSLSSLLNDRL---LDPFIVT-----HALRSAPNADSALSIMEALKSNPNFSHN 101
            R  S +   +LLN  +   L P +VT     H L      DSA S +  L     FS +
Sbjct: 406 CRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSA-SRLFRLMIRDGFSPD 464

Query: 102 QSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWN 161
           Q T +A    L +  R  E   ++  +           +  L+  Y  +G +E   S + 
Sbjct: 465 QWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFK 524

Query: 162 EYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG 221
                  L ++ ++N+++    K GK  +A+     +      P   TY +++E ++   
Sbjct: 525 RMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEY 584

Query: 222 KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
             D A E+ + L     +     Y   ++ +    R +EA+ ++ +++++G
Sbjct: 585 DFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEG 635



 Score = 40.0 bits (92), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 12/138 (8%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++L+  L +      A  +   MI  G  PD  TF+  M      G      ++   ++
Sbjct: 433 YNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLK 492

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
           +  V+ + + +  LI  YCK             +     +P++ T  ++   L KEG+ +
Sbjct: 493 EKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQ 552

Query: 591 EAAAVEERCEKINDVPSL 608
           +A  + E   K +  P+L
Sbjct: 553 DAMLLVEDMAKFDVKPTL 570


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 91/417 (21%), Positives = 163/417 (39%), Gaps = 39/417 (9%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           +T +Y+ V+    K G+  +AV   RQ+ D G +P++ TY  +I+      +L  A+ + 
Sbjct: 577 NTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLL 636

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMG 290
             +       +   Y  L  G     RFDEA  +L+ M   G  P               
Sbjct: 637 REMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAP--------------- 681

Query: 291 FIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALA 350
                N      + D   K  R  E     ++   D+  +   IAY       +D    A
Sbjct: 682 -----NAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAY----SALIDGLCKA 732

Query: 351 NTLDEWSPEVVSLLADAKF--VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYA 408
             +DE    +  ++   +   V T  ++   L      +T    FC +A + G   D+YA
Sbjct: 733 GRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMA-ERGCKADIYA 791

Query: 409 LEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR 468
              M+      G       L+ ++++ G+     T  ++I     + + D A+  FH   
Sbjct: 792 YNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIP 851

Query: 469 TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
             C      +  + Y++L+ +L   +R   A+ +L  M+  G  PD   +  +M      
Sbjct: 852 EDC------RDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKA 905

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAAT--KELLKKSL 583
           G  ++  KL   +R  G  PD   + ++I      LS +  +P A    +E+L+K+L
Sbjct: 906 GSPEVAAKLLQEMRSRGHSPDLRTYTIMISG----LSKAKQLPLACDYFEEMLRKNL 958



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 99/479 (20%), Positives = 186/479 (38%), Gaps = 31/479 (6%)

Query: 101  NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
            N  T   L   L+K  +  E   L+  +        +V +  ++      G +E  +   
Sbjct: 542  NVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVL 601

Query: 161  NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
             + R    L    +YN ++  + K  +  EAV   R++++ G  P+  TYT +   L   
Sbjct: 602  RQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRS 661

Query: 221  GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM-RDDGKFPGRAM 279
            G+ D A+E+   +        +  Y  +V+G     R  EA     +M RD+   P    
Sbjct: 662  GRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIA 721

Query: 280  RVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGV 338
              AL + + + G I  A EFL  M+   RI +V  +    +   D         RI  G+
Sbjct: 722  YSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAG-------RIDTGL 774

Query: 339  QLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWH-----FF 393
            +L   +  +     +  ++  + +     +F     L+ ++  H  +  T  H       
Sbjct: 775  ELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKAL 834

Query: 394  CW-------VAY---QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFST 443
            C        V+Y    P    D  +   ++T L      E    L+  + +DG       
Sbjct: 835  CGNDRIDEAVSYFHSIPEDCRDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACN 894

Query: 444  IRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVL 503
               ++D    +   + A K   + R+  G     +    Y+ ++  L+K K+   A +  
Sbjct: 895  YMTVMDGLFKAGSPEVAAKLLQEMRSR-GHSPDLR---TYTIMISGLSKAKQLPLACDYF 950

Query: 504  EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            EEM+   + PD   +S L+  F  + D+  V   + ++R +G+EP   M+  ++ + CK
Sbjct: 951  EEMLRKNLKPDAIVYSSLIDAFC-KADK--VDDAWKLLRSSGIEPTITMYSTMVDSLCK 1006



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 104/448 (23%), Positives = 172/448 (38%), Gaps = 67/448 (14%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN++++   K G+  +A   FR+ I  G  P   TY+ +I+ L    ++D   ++   +
Sbjct: 3   TYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEM 62

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
                   +  Y  LV   +G  R  EA SLL  M  +G  P      + ++ + + G I
Sbjct: 63  AGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEI 122

Query: 293 QGANEFLREM-----LPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPK 347
           + A   + EM     +PD  I  V  +        DE           +   L     P 
Sbjct: 123 EAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDE-------AWFFFQQVLLIGFTPD 175

Query: 348 ALA-NTLDEWSPEVVSLLADAKFVWTTRLVCKVL-RHFKSPETAWHFFCWVAYQPGYTHD 405
           A+  NT+       V  L  A  +    +V ++L   F SP                   
Sbjct: 176 AVTYNTM-------VDGLYKAGRLEAAGMVLQLLAESFSSPT------------------ 210

Query: 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465
           V+     +  L++ G++         +   G+     T   +ID    + K D AL    
Sbjct: 211 VFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLR 270

Query: 466 DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF 525
           D  +  G       M  +SSLL  L +  R  +AI +L+ M     VP+V  F+ LM   
Sbjct: 271 DKNSQAG-------MFAFSSLLHGLCQAHRLEEAIQLLKAM---PCVPNVVCFNSLMNGL 320

Query: 526 --ALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------LSNSNLM------- 570
             A + DE    +LF +++++G   D   + +L++  CK         +  LM       
Sbjct: 321 CQARRVDEAF--ELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCS 378

Query: 571 PDAATKELLKKSLWKEGRRKEAAAVEER 598
           P+  T   L + L   GR  +A  V ER
Sbjct: 379 PNVVTFSTLIQGLCNAGRVNQAWEVYER 406



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 56/102 (54%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++N V+    K  +  +A   F++ ++ G  PN  TY+ +I+ L  + K+D AL++ + +
Sbjct: 510 TFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKM 569

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             +  +  +  Y  +V+G + V R ++A  +L +MRD G  P
Sbjct: 570 VELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLP 611



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 90/210 (42%), Gaps = 14/210 (6%)

Query: 71   IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHE----LKTLIG 126
            IV  AL      D A+S   ++   P    ++ + + L T L  S+R+ +    L+ ++ 
Sbjct: 829  IVIKALCGNDRIDEAVSYFHSI---PEDCRDEISYNTLITSLVASRRSEQALELLRAMVA 885

Query: 127  DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
            D  S      + N+M +M     +G  E+      E R R       +Y I++S  +K  
Sbjct: 886  DGGSPD----ACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAK 941

Query: 187  KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
            +   A + F +++ +   P++  Y+ +I+      K+D A ++  +     I+ T   Y 
Sbjct: 942  QLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLLRS---SGIEPTITMYS 998

Query: 247  ILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
             +V+        D+A  ++ EM+     PG
Sbjct: 999  TMVDSLCKNRGTDKALEVIREMKSKNCEPG 1028



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 84/212 (39%), Gaps = 6/212 (2%)

Query: 69  PFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT 123
           P +VT+      L      D    ++E + +    + N  T + L   L    R  E  +
Sbjct: 34  PTVVTYSTVIDGLCRDNEVDKGCKLLEEM-AGRGCAPNAVTYNTLVNALLGQGRAKEAFS 92

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L+  ++++      + F  +++     G++E      +E   R  +   E + +++    
Sbjct: 93  LLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALC 152

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           + G+  EA   F+QV+  G  P++ TY  M++ L   G+L++A  V   L       T  
Sbjct: 153 ELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVF 212

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            + I V+G         A    + M   G  P
Sbjct: 213 TFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSP 244



 Score = 42.0 bits (97), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 100 HNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLST 159
           ++Q+ + A +++L    + H L+  I  + +   +   V F +LM     +  ++     
Sbjct: 273 NSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAMPCVPNVVCFNSLMNGLCQARRVDEAFEL 332

Query: 160 WNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA---VETFRQVIDEGAIPNSRTYTVMIEH 216
           ++  ++        +YNI++    K  +  EA   VE  R+   EG  PN  T++ +I+ 
Sbjct: 333 FDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRT--EGCSPNVVTFSTLIQG 390

Query: 217 LVNLGKLDSALEVFSALPLMR-IKRTSKQYLILVEGFV 253
           L N G+++ A EV+  +  +  I      Y  L+EG  
Sbjct: 391 LCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLC 428



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 49/230 (21%), Positives = 92/230 (40%), Gaps = 27/230 (11%)

Query: 397 AYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID-FYGISK 455
           A + G   +V     ++  L++   ++   +L+AK+   G R    T   ++D    + +
Sbjct: 534 ALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGR 593

Query: 456 KADAA--LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP 513
             DA   L+   D   L   ++       Y++L+    K +R  +A+ +L EM+ +G  P
Sbjct: 594 MEDAVVVLRQMRDAGCLPDAVT-------YNTLIDGFFKRQRLREAVGLLREMLEAGFHP 646

Query: 514 DVQTFSGLMYHFALQG--DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--------- 562
            V T++ L +     G  DE +  ++   +   G  P+A  +  ++   CK         
Sbjct: 647 SVVTYTTLCHGLCRSGRFDEAV--EILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALG 704

Query: 563 YLS----NSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
           Y      +  + P       L   L K GR  EA    ER  +   +P +
Sbjct: 705 YFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDV 754



 Score = 38.9 bits (89), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV--QKL 537
           ++ Y++L+  L+K     DA+ +LE MI SG+ PDV TF+ ++    L  +++I+    +
Sbjct: 473 LVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLD--GLCKEQRILDAHNV 530

Query: 538 FSMVRQNGVEPDAYMFKVLIQAYCK 562
           F    + G  P+   +  LI    K
Sbjct: 531 FKRALERGCRPNVVTYSTLIDGLSK 555


>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Cucumis sativus]
          Length = 822

 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 95/462 (20%), Positives = 199/462 (43%), Gaps = 33/462 (7%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           S+  V++   K GK   A+E F ++   G  PN  TY  +I  L   G+LD+A E+   +
Sbjct: 245 SFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKM 304

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFI 292
            +  ++   K Y  L+ G + +  FD+   +L+EM   G  P   +    ++   +MG I
Sbjct: 305 TVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNI 364

Query: 293 QGANEFLREMLPDKRI--KNVRYY---EDGSDDDEDENDDNNSGVRIAYGVQLKP----- 342
           +GA + +++++  K I   +V  Y   +     D+ E+ +N     ++ G+ + P     
Sbjct: 365 EGALK-IKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYS 423

Query: 343 ---WLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQ 399
              WL  K   ++   ++  ++S       +  T LVC + +  K  E    +F     +
Sbjct: 424 VVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWF--RLLE 481

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
            G          ++  L   G +    R++ ++   G+ +   T   +I  +    K + 
Sbjct: 482 KGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEG 541

Query: 460 ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
             +   ++ T  G       +  Y+ LLR L    +  DAI + +E   SG++ ++ T+ 
Sbjct: 542 CFR-LREEMTKRGIQPD---IYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYG 597

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNS 567
            +M  +      + V+ LF+ +    +E ++ ++ ++I+A+C+             + + 
Sbjct: 598 IMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSK 657

Query: 568 NLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA 609
            ++P+ AT   L   +   G  ++A  + +   K   VP++ 
Sbjct: 658 GILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVV 699



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 64/141 (45%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L++     G L+  +  W+E++    + +  +Y I+M  Y K  +  +    F +++ + 
Sbjct: 564 LLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKK 623

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
              NS  Y ++I+     G + +AL++   +    I      Y  L+ G   +   ++AK
Sbjct: 624 MELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAK 683

Query: 263 SLLNEMRDDGKFPGRAMRVAL 283
            L++EMR +G  P      AL
Sbjct: 684 HLIDEMRKEGFVPNVVCYTAL 704



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 100/223 (44%), Gaps = 14/223 (6%)

Query: 62  LNDRLLDPFIVTHA--LRSAPNA---DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQ 116
           +  R + P I T+   LR   N    D A+ + +  K++   S N  T   +     K+ 
Sbjct: 549 MTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLIS-NIHTYGIMMEGYCKAN 607

Query: 117 RNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYN 176
           R  +++ L  ++ S K    S+ +  +++ +  +G++   L      + +  L +  +Y+
Sbjct: 608 RIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYS 667

Query: 177 IVMSVYAKTGKNFEAVETFRQVIDE----GAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            ++      G     VE  + +IDE    G +PN   YT +I     LG++D+A   +  
Sbjct: 668 SLIHGVCNIG----LVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLE 723

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +    I      Y ++++G+  +   ++A +LL +M++ G  P
Sbjct: 724 MISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVP 766



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 75/185 (40%), Gaps = 7/185 (3%)

Query: 71  IVTHALRSAPNADSALSIMEALKSN---PNFSHNQSTLHALATVLAKSQRNHELKTLIGD 127
           I+  A     N  +AL ++E +KS    PN +   S +H +  +       H    LI +
Sbjct: 633 IIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKH----LIDE 688

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           +    F+   V +  L+  Y   G ++   STW E        +  +Y +++  Y K G 
Sbjct: 689 MRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGN 748

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
             +A     ++ + G +P+  TY V+         +D+A +V   +    +      Y  
Sbjct: 749 MEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTT 808

Query: 248 LVEGF 252
           LV G+
Sbjct: 809 LVHGW 813



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/178 (20%), Positives = 73/178 (41%), Gaps = 1/178 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + +  L+  +   G +E       E  +R       +YN ++      GK  +A++ + +
Sbjct: 524 ITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDE 583

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
               G I N  TY +M+E      +++    +F+ L   +++  S  Y I+++       
Sbjct: 584 FKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGN 643

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
              A  LL  M+  G  P  A   +L   +  +G ++ A   + EM  +  + NV  Y
Sbjct: 644 VAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCY 701



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 55/126 (43%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+     +G L        E  +R   +   +YN ++  +   GK         ++   G
Sbjct: 494 LIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRG 553

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  TY  ++  L N+GKLD A++++       +      Y I++EG+    R ++ +
Sbjct: 554 IQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVE 613

Query: 263 SLLNEM 268
           +L NE+
Sbjct: 614 NLFNEL 619



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 84/212 (39%), Gaps = 20/212 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   +++    M+    +   +E V+ L  +L S  M L      +II  +  +    AA
Sbjct: 588 GLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAA 647

Query: 461 LKAFHDDRTLCGPISKFKL--MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
           L+   + +      SK  L     YSSL+  +       DA ++++EM   G VP+V  +
Sbjct: 648 LQLLENMK------SKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCY 701

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSN 566
           + L+  +   G     +  +  +    + P+ + + V+I  YCK             +  
Sbjct: 702 TALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKE 761

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
           S ++PD  T  +L     K      A  V ++
Sbjct: 762 SGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQ 793


>gi|224133900|ref|XP_002327707.1| predicted protein [Populus trichocarpa]
 gi|222836792|gb|EEE75185.1| predicted protein [Populus trichocarpa]
          Length = 225

 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 6/161 (3%)

Query: 371 WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIA 430
           W +  V ++L+     E AW FF W +    + HD +    ML I    G +E +  +  
Sbjct: 70  WDSFTVNQILKTHPPMEKAWLFFNWASKLKRFKHDQFTYTTMLDIFGEAGRIESMKYVFK 129

Query: 431 KLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR-TLCGPISKFKLMLLYSSLLRT 489
           K++  G+++   T   I+++   S   D A+K + + R  +C P      ++ Y++ L+ 
Sbjct: 130 KMQEMGLKIDVVTYTSILNWVSKSGDVDGAVKIWKEMRENMCFPT-----VVSYTAYLKV 184

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
           L   KR  + I+V +EM+ SGI P+  T++ LM H  + G+
Sbjct: 185 LFDNKRVKEGIDVYKEMLESGISPNCHTYTVLMEHLVVTGE 225



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 98/216 (45%), Gaps = 7/216 (3%)

Query: 12  LSKAFTQLQTRSFVRAPFTNKL---ALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLL- 67
           L++ FT+       ++P +N +    +Y+R   +I +I   ++ ++ +S    L    + 
Sbjct: 12  LTRFFTRKPRNPKPKSPSSNVIEPQKIYMR--DIISNIYKILKYSTWDSAQEELTKLNIK 69

Query: 68  -DPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
            D F V   L++ P  + A            F H+Q T   +  +  ++ R   +K +  
Sbjct: 70  WDSFTVNQILKTHPPMEKAWLFFNWASKLKRFKHDQFTYTTMLDIFGEAGRIESMKYVFK 129

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
            +         V + +++ W S SGD++  +  W E R+     +  SY   + V     
Sbjct: 130 KMQEMGLKIDVVTYTSILNWVSKSGDVDGAVKIWKEMRENMCFPTVVSYTAYLKVLFDNK 189

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
           +  E ++ ++++++ G  PN  TYTV++EHLV  G+
Sbjct: 190 RVKEGIDVYKEMLESGISPNCHTYTVLMEHLVVTGE 225


>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1102

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 126/586 (21%), Positives = 236/586 (40%), Gaps = 99/586 (16%)

Query: 47  RLAVRSNSSNSLSSLLNDRLLDPFI--VTHALRSAP-NADSALSIMEALKSNPNFSHNQS 103
           R   R   SN L+   ++R   P    V H LRSA  +   AL + +++   P   H   
Sbjct: 54  RPTSRRAGSNKLAPPCDEREGRPGAQNVVHMLRSAAADPAEALQLFKSVAQQPRIVHTTE 113

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN-FMNLMQWYSTSGDLELVLSTWNE 162
           + + +  ++    R  ++  +  D+   + +  +V  F+ + +     G L         
Sbjct: 114 SCNYMLELMRAHGRVRDMAQVF-DLMQRQIVKANVGTFLTIFRSLGMEGGLRSAPVALPM 172

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
            ++   +L++ +YN ++    K+G + EA+E ++ +  +G +P+ RTY+V+   ++  GK
Sbjct: 173 MKEAGIVLNSYTYNGLIYFLVKSGYDREAMEVYKVMATDGIVPSVRTYSVL---MLAFGK 229

Query: 223 LDSALEVFSALPLMR------IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
            D    V + + L+R      +K     Y I +       RF+EA  +L +M D+G  P 
Sbjct: 230 RD----VETVVWLLREMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPD 285

Query: 277 RAMR-VALERMQEMGFIQGANEFLREM-LPDKRIKNVRYYEDGSDDDEDENDDNNSGVRI 334
                V ++ + + G +  A +   +M   D++   V Y      D   +N D+ S + I
Sbjct: 286 VVTNTVLIQILCDAGRVSDAKDVFWKMKASDQKPDRVTYIT--LLDKCGDNGDSRSVIEI 343

Query: 335 AYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFC 394
                   W   KA     D ++  VV+      +      +C+V R     + A   F 
Sbjct: 344 --------WNAMKA-----DGYNDNVVA------YTAVVDALCQVGR----VDEASDVFD 380

Query: 395 WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS 454
            +  Q G     Y+   +++   +   +     L   +   G      T  L I++YG  
Sbjct: 381 QMK-QKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFINYYG-- 437

Query: 455 KKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
            K+  +LKA          I +++LM           K K               GIVPD
Sbjct: 438 -KSGESLKA----------IKRYELM-----------KSK---------------GIVPD 460

Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSN------ 568
           V   + ++Y  A  G   + +++F  ++  GV PD   + ++I+  C   SN++      
Sbjct: 461 VVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIKC-CSKASNADEAMKVF 519

Query: 569 -------LMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
                   +PD      L  +L+K GR  EA  +    +++N  P+
Sbjct: 520 SEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHELKEMNLDPT 565



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 78/172 (45%)

Query: 104  TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
            T + + + L KS+  +E   L   + S  F      +  L+      G +E     ++E 
Sbjct: 848  TYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEM 907

Query: 164  RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
                   +   YNI+++ Y   G   +  E F+ ++D+G  P+ ++YTV+I  L   G+L
Sbjct: 908  LDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRL 967

Query: 224  DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            + +L  F  L  + ++     Y +L+ G     R +EA SL N+M   G  P
Sbjct: 968  NDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAP 1019



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 12/138 (8%)

Query: 483  YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
            Y  LL  L K  +  DA ++ +EM+  G  P+   ++ L+  + L G+ + V +LF  + 
Sbjct: 884  YGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMV 943

Query: 543  QNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRK 590
              G+ PD   + VLI A C            + L+   L PD  T  LL   L + GR +
Sbjct: 944  DQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLE 1003

Query: 591  EAAAVEERCEKINDVPSL 608
            EA ++    EK    P+L
Sbjct: 1004 EAVSLFNDMEKSGIAPNL 1021



 Score = 45.8 bits (107), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 69/366 (18%), Positives = 135/366 (36%), Gaps = 64/366 (17%)

Query: 213  MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
            +I HL    K   A E+      + +   +  Y  L+ G V     D A+ L +EM+  G
Sbjct: 747  LIRHLCKSKKALEAHELVKKFESLGVSLKTGSYNALICGLVDENLIDVAEGLFSEMKRLG 806

Query: 273  KFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGV 332
              P                    +EF   ++ D   K++R  ED     ++ +       
Sbjct: 807  CDP--------------------DEFTYNLILDAMGKSMRI-EDMLKVQKEMHCKGYEST 845

Query: 333  RIAYGVQLKPWLDPKALANTLD---------------EWSPEVVSLLADAKFVWTTRLVC 377
             + Y   +   +  K L   +D                + P +  LL D K      L  
Sbjct: 846  YVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFD 905

Query: 378  KVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM 437
            ++L +   P  A +      Y+                LA  G+ E V  L   +   G+
Sbjct: 906  EMLDYGCKPNRAIYNILLNGYR----------------LA--GNTEKVCELFQNMVDQGI 947

Query: 438  RLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL---MLLYSSLLRTLTKCK 494
                 +  ++I     + + + +L  F         +++  L   ++ Y+ L+  L +  
Sbjct: 948  NPDIKSYTVLIGALCTAGRLNDSLSYFRQ-------LTELGLEPDLITYNLLIHGLGRSG 1000

Query: 495  RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK 554
            R  +A+++  +M  SGI P++ T++ L+ +   +G      K++  + +NG +P+ + + 
Sbjct: 1001 RLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWKPNVFTYN 1060

Query: 555  VLIQAY 560
             LI  Y
Sbjct: 1061 ALIGGY 1066


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 111/529 (20%), Positives = 208/529 (39%), Gaps = 75/529 (14%)

Query: 119 HELKTL------IGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
           HE+K L       G +  S+ L   ++F  L+         ++V+S   +   R    + 
Sbjct: 52  HEIKGLDDAIDLFGYMVRSRPLPCVIDFCKLLGVVVRMERPDVVISLHRKMEMRRIPCNI 111

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            S+ I++  +    K   A+ TF ++   G  P+  T++ ++  L    ++  AL  F  
Sbjct: 112 YSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQ 171

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGF 291
           +     K     +  L+ G     R  EA +LL+ M +DG  P +      ++ M +MG 
Sbjct: 172 I----CKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGD 227

Query: 292 IQGANEFLREMLPDKRIK-NVRYYE---DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPK 347
              A   LR+M    RIK NV  Y    DG   D  + D  N          L   +  K
Sbjct: 228 TVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQN----------LFSEMQEK 277

Query: 348 ALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETA------------WHFF-- 393
            ++  L  ++  +    +  ++    RL+ ++     SP+                FF  
Sbjct: 278 GISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEA 337

Query: 394 --CWVAYQP-GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF 450
              +    P G   +      M+   ++   ++  +R+   + + G      T  ++ID 
Sbjct: 338 EELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDG 397

Query: 451 YGISKKADAALKAFHDDRTLCGPISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMI 507
           Y  +K+ D  +K  H+       +S+  L+   + Y++L+    +      A+++L+EMI
Sbjct: 398 YCGAKRVDDGMKLLHE-------MSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMI 450

Query: 508 FSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ-----------NGVEPDAYMFKVL 556
            SG+ P+V T + L+      G  K   ++F ++++           N VEPD   + +L
Sbjct: 451 SSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNIL 510

Query: 557 IQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
           I                + + +  L+PD  T   +   L K+ R  EA 
Sbjct: 511 ICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEAT 559



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 92/446 (20%), Positives = 178/446 (39%), Gaps = 31/446 (6%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL 143
           SAL+++  ++       N     A+   L K  R  + + L  ++           +  +
Sbjct: 230 SALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCM 289

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
           +  + +SG          E  +R       +++++++   K GK FEA E + +++  G 
Sbjct: 290 INGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGI 349

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL---ILVEGFVGVERFDE 260
           IPN+ TY  MI+      +LD+A  +F    LM  K  S   +   IL++G+ G +R D+
Sbjct: 350 IPNTITYNSMIDGFSKQNRLDAAERMFY---LMATKGCSPDVITFSILIDGYCGAKRVDD 406

Query: 261 AKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSD 319
              LL+EM   G          L     ++G +  A + L+EM+      NV       D
Sbjct: 407 GMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLD 466

Query: 320 DDEDENDDNNSGVRIA---YGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLV 376
                   NN  ++ A   + V  K  +D  A ++  ++  P+V +            L+
Sbjct: 467 -----GLCNNGKLKDALEMFKVMQKSKMDLDA-SHPFNDVEPDVQTY---------NILI 511

Query: 377 CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
           C ++   K  E A   +  + ++ G   D      ++  L +   ++   ++   + S G
Sbjct: 512 CGLINEGKFSE-AEELYEEMPHR-GLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKG 569

Query: 437 MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
                 T   +I+ Y    +    L+ F +     G        + Y +L+    +    
Sbjct: 570 FSPDVVTFTTLINGYCKVGRVGDGLEVFCE----MGRRGIVANAITYRTLIHGFCQVGNI 625

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLM 522
             A+++ +EMI SG+ PD  T   ++
Sbjct: 626 NGALDIFQEMISSGVYPDTITIRNML 651



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 102/502 (20%), Positives = 186/502 (37%), Gaps = 98/502 (19%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++  +M+   + G+  EAV    +++++G  PN  TY  +++ +  +G   SAL +   +
Sbjct: 179 AFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKM 238

Query: 234 P-LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG---------------- 276
             + RIK     Y  +++G     R  +A++L +EM++ G  P                 
Sbjct: 239 EEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGR 298

Query: 277 -----RAMRVALER----------------MQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
                R +R   ER                ++E  F + A E   EMLP   I N   Y 
Sbjct: 299 WSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFE-AEELYNEMLPRGIIPNTITYN 357

Query: 316 DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVV--SLLADAKFVWTT 373
              D    +N   ++  R+ Y +  K               SP+V+  S+L D  +    
Sbjct: 358 SMIDGFSKQNR-LDAAERMFYLMATKGC-------------SPDVITFSILIDG-YCGAK 402

Query: 374 RL--VCKVLRHFK---------SPETAWHFFCWVA------------YQPGYTHDVYALE 410
           R+    K+L             +  T  H FC +                G   +V    
Sbjct: 403 RVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCN 462

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRL----PFSTIRLIIDFYGISKKADAALKAFHD 466
            +L  L  +G ++    +   ++   M L    PF+ +   +  Y I          F +
Sbjct: 463 TLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSE 522

Query: 467 DRTLCGPISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
              L   +    L+   + Y+S++  L K  R  +A  + + M   G  PDV TF+ L+ 
Sbjct: 523 AEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLIN 582

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMP 571
            +   G      ++F  + + G+  +A  ++ LI  +C+             + +S + P
Sbjct: 583 GYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYP 642

Query: 572 DAATKELLKKSLWKEGRRKEAA 593
           D  T   +   LW +   K A 
Sbjct: 643 DTITIRNMLTGLWSKEELKRAV 664


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 102/465 (21%), Positives = 177/465 (38%), Gaps = 111/465 (23%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSA 232
           +YN +M+ Y   G+    V+  R+   E A+  ++ T   +I  L   G+  +AL V   
Sbjct: 130 AYNAMMAGYCGAGQ----VDAARRWCAERAVERDAYTCDTLIRGLCGRGRTANALAVLDE 185

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGF 291
           +   R       Y IL+E       + +A  LL+EMRD G  P      V +  + + G 
Sbjct: 186 MLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGR 245

Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKP------WLD 345
           +  A EFL         KN+  Y  G + +            ++Y + LK       W D
Sbjct: 246 VDDAIEFL---------KNLPSY--GCEPNT-----------VSYNIVLKGLCTAERWED 283

Query: 346 PKALANTLDE--WSPEVVSLLADAKFVWTTRLVCKVL-------RHFKSPETA-----WH 391
            + L   + +    P VV+      F+    LV   L       ++  SP +       H
Sbjct: 284 AEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLH 343

Query: 392 FFCW------------VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
            FC             +    G   D+ +   +LT L R G V++   L+ +L+  G   
Sbjct: 344 AFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKG--- 400

Query: 440 PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDA 499
                                          C P+     ++ Y++++  LTK  +  +A
Sbjct: 401 -------------------------------CAPV-----LISYNTVIDGLTKAGKTKEA 424

Query: 500 INVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
           + +L EM+  G+ PD+ T+S +      +   +   + F  V+  G+ P+  ++  +I  
Sbjct: 425 LELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILG 484

Query: 560 YCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
            CK            Y+  +  MP+ +T  +L + L  EG  KEA
Sbjct: 485 LCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEA 529



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 64/134 (47%)

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            L++     G     L+  +E  +R  +    +Y I++    K     +A++   ++ D+
Sbjct: 165 TLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDK 224

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G  P+  TY V++  +   G++D A+E    LP    +  +  Y I+++G    ER+++A
Sbjct: 225 GCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDA 284

Query: 262 KSLLNEMRDDGKFP 275
           + L+ EM   G  P
Sbjct: 285 EELMGEMGQKGCPP 298



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/217 (20%), Positives = 92/217 (42%), Gaps = 3/217 (1%)

Query: 89  MEALKSNPNF--SHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQW 146
           +E L+  P +  S N  + + L     K ++  +    +  + S       V++  L+  
Sbjct: 320 LEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTA 379

Query: 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206
              SG++++ +   ++ + +       SYN V+    K GK  EA+E   +++ +G  P+
Sbjct: 380 LCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPD 439

Query: 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
             TY+ +   L    +++ A+  F  +  M I+  +  Y  ++ G         A  L  
Sbjct: 440 IITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFA 499

Query: 267 EMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
            M  +G  P  +   + +E +   G I+ A + L E+
Sbjct: 500 YMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDEL 536



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 50/105 (47%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           +T SYNIV+       +  +A E   ++  +G  PN  T+ ++I  L   G ++ ALEV 
Sbjct: 264 NTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVL 323

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             +P       S  Y  L+  F   ++ D+A + L+ M   G +P
Sbjct: 324 EQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYP 368



 Score = 46.6 bits (109), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 46/220 (20%), Positives = 91/220 (41%), Gaps = 10/220 (4%)

Query: 54  SSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLA 113
           S NSLS        +P +  HA       D A++ ++ + S   +  +  + + L T L 
Sbjct: 332 SPNSLS-------YNPLL--HAFCKQKKMDKAMAFLDLMVSRGCYP-DIVSYNTLLTALC 381

Query: 114 KSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE 173
           +S        L+  +       V +++  ++   + +G  +  L   NE   +       
Sbjct: 382 RSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDII 441

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y+ + +   +  +  +A+  F +V D G  PN+  Y  +I  L    +  SA+++F+ +
Sbjct: 442 TYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYM 501

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
                      Y IL+EG        EA+ LL+E+   G+
Sbjct: 502 IGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGE 541


>gi|297832604|ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330024|gb|EFH60443.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 829

 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 102/497 (20%), Positives = 196/497 (39%), Gaps = 69/497 (13%)

Query: 86  LSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQ 145
           L ++E ++S      ++ T   + +  A+     E K    ++ S  +   +V +  L+Q
Sbjct: 273 LGVLEEMRSK-GLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQ 331

Query: 146 WYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP 205
            +  +G     LS   E  +      + +YN +++ YA+ G + EA      +  +G +P
Sbjct: 332 VFGKAGVYTEALSVLKEMEENNCPADSVTYNELVAAYARAGFSKEAAVVIEMMTQKGVMP 391

Query: 206 NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL 265
           N+ TYT +I+     GK D AL++F ++        +  Y  ++       R +E   +L
Sbjct: 392 NAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKML 451

Query: 266 NEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREML-----PDKRIKNVRYYEDGSD 319
            +M+ +G FP RA     L      G  +  N   REM      PD+   N      G  
Sbjct: 452 CDMKSNGCFPNRATWNTILALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRC 511

Query: 320 DDE-DENDDNNSGVRIAYGVQLKPWLDPKALANTL---DEW-SPEVVSLLADAKFVWTTR 374
             E D +       R  +   +  +    AL N L    +W S E V  ++D K      
Sbjct: 512 GSEVDASKMYGEMTRAGFNACVTTY---NALLNALARKGDWRSGENV--ISDMKS----- 561

Query: 375 LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
                 + FK  ET++                     ML   A+ G+   ++R+   +  
Sbjct: 562 ------KGFKPTETSYSL-------------------MLQCYAKGGNYLGIERIEEGINE 596

Query: 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL---------MLLYSS 485
             +   +  +R +             L A    R L G    F L         M++++S
Sbjct: 597 GQIFPSWMLLRTL-------------LLANFKCRALAGSERAFTLFKKHGYKPDMVIFNS 643

Query: 486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
           +L   T+      A  +L+ +   G+ PD+ T++ LM  +  +G+    +++   + ++ 
Sbjct: 644 MLSIFTRNNMYDQAEGILQSIHEDGLNPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQ 703

Query: 546 VEPDAYMFKVLIQAYCK 562
           ++PD   +  +I+ +C+
Sbjct: 704 LKPDLVSYNTVIKGFCR 720



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 76/168 (45%), Gaps = 16/168 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY---GISKKA 457
           GY  D+     ML+I  R+   +  + ++  +  DG+     T   ++D Y   G   KA
Sbjct: 633 GYKPDMVIFNSMLSIFTRNNMYDQAEGILQSIHEDGLNPDLVTYNSLMDMYVRRGECWKA 692

Query: 458 DAALKAFHDDRTLCGPISKFKLMLL-YSSLLRTLTKCKRDF--DAINVLEEMIFSGIVPD 514
           +  LK            S+ K  L+ Y+++++    C++    +A+ +L EM   GI P 
Sbjct: 693 EEILKTLEK--------SQLKPDLVSYNTVIKGF--CRKGLMQEAVRMLSEMTERGIRPC 742

Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           + T++  +  +   G    ++ +   + +N   P+   FK+++  YC+
Sbjct: 743 IFTYNTFVSGYTAMGMYGEIEDVIECMAKNDCRPNELTFKMVVDGYCR 790



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/196 (19%), Positives = 81/196 (41%), Gaps = 7/196 (3%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           V  A   A   D AL +  ++K       N  T +A+ ++L K  R++E+  ++ D+ S+
Sbjct: 399 VIDAYGKAGKEDEALKLFYSMK-EAGCVPNTCTYNAVLSMLGKKSRSNEMIKMLCDMKSN 457

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
                   +  ++      G  + V   + E +        +++N ++S Y + G   +A
Sbjct: 458 GCFPNRATWNTILALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDA 517

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE- 250
            + + ++   G      TY  ++  L   G   S   V S +     K T   Y ++++ 
Sbjct: 518 SKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQC 577

Query: 251 -----GFVGVERFDEA 261
                 ++G+ER +E 
Sbjct: 578 YAKGGNYLGIERIEEG 593



 Score = 46.6 bits (109), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 85/206 (41%), Gaps = 17/206 (8%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           D + +E ++ IL R     +  +L+ K+      L       I+  Y  + K + A+  F
Sbjct: 181 DHHVIEILVRILGRESQYSVAAKLLDKIPLQDYMLDVRAYTTILHAYSRTGKYEKAINLF 240

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAI-NVLEEMIFSGIVPDVQTFSGLMY 523
              + + GP      ++ Y+ +L    K  R +  I  VLEEM   G+  D  T S ++ 
Sbjct: 241 ERMKEM-GPSPT---LVTYNVILDVFGKMGRSWRKILGVLEEMRSKGLKFDEFTCSTVLS 296

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY------------CKYLSNSNLMP 571
             A +G  +  +  F+ ++  G EP    +  L+Q +             K +  +N   
Sbjct: 297 ACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENNCPA 356

Query: 572 DAATKELLKKSLWKEGRRKEAAAVEE 597
           D+ T   L  +  + G  KEAA V E
Sbjct: 357 DSVTYNELVAAYARAGFSKEAAVVIE 382



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 12/121 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++LL+   K     +A++VL+EM  +    D  T++ L+  +A  G  K    +  M+ 
Sbjct: 326 YNALLQVFGKAGVYTEALSVLKEMEENNCPADSVTYNELVAAYARAGFSKEAAVVIEMMT 385

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
           Q GV P+A  +  +I AY K             +  +  +P+  T   +   L K+ R  
Sbjct: 386 QKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSN 445

Query: 591 E 591
           E
Sbjct: 446 E 446



 Score = 38.9 bits (89), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 6/138 (4%)

Query: 169 LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALE 228
           +L   +Y  ++  Y++TGK  +A+  F ++ + G  P   TY V+++    +G+  S  +
Sbjct: 214 MLDVRAYTTILHAYSRTGKYEKAINLFERMKEMGPSPTLVTYNVILDVFGKMGR--SWRK 271

Query: 229 VFSALPLMRIKRTSKQYLILVEGFVGVER---FDEAKSLLNEMRDDGKFPGRAMRVA-LE 284
           +   L  MR K                 R     EAK    E++  G  PG     A L+
Sbjct: 272 ILGVLEEMRSKGLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQ 331

Query: 285 RMQEMGFIQGANEFLREM 302
              + G    A   L+EM
Sbjct: 332 VFGKAGVYTEALSVLKEM 349


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 115/530 (21%), Positives = 214/530 (40%), Gaps = 57/530 (10%)

Query: 41  QLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSH 100
           Q+++ + +A    S+N+   ++       F+ +  LR A      +  M   K  P +S 
Sbjct: 153 QILEEMSMAGFGPSNNTCIEMVAS-----FVKSRKLREAF---GVIETMRKFKFRPAYSA 204

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN---FMNLMQWYSTSGDLELVL 157
             + + AL+         HE   ++  +   + +   V    F  L+  ++  G ++  L
Sbjct: 205 YTTLIGALSAA-------HEADPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRVDAAL 257

Query: 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217
           S  +E +  +       YN+ +  + K GK   A + F ++  +G +P+  T+T MI  L
Sbjct: 258 SLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVL 317

Query: 218 VNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR 277
               ++D A+E+F  L   +       Y  ++ G+  V +F+EA SLL   +  G  P  
Sbjct: 318 CKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSV 377

Query: 278 -AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAY 336
            A    L  +   G ++ A   L  M  D    N+  Y    D              +  
Sbjct: 378 IAYNCILTCLGRKGKVEEALRILEAMKMDA-APNLTSYNILID-------------MLCK 423

Query: 337 GVQLKPWLDPKALANTLDEWS--PEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFC 394
             +L+  L    + +++ E    P ++++      +   RL CK  R     + A   F 
Sbjct: 424 AGELEAALK---VQDSMKEAGLFPNIITV-----NIMIDRL-CKAQRL----DEACSIFL 470

Query: 395 WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI--RLIIDFYG 452
            + ++   T D      ++  L RHG V     L  K+   G + P + +   LI +F+ 
Sbjct: 471 GLDHKV-CTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSG-QTPNAVVYTSLIRNFFK 528

Query: 453 ISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV 512
             +K D            C P     LMLL ++ +  + K         + EE+   G+ 
Sbjct: 529 CGRKEDGHKIYKEMMHRGCSP----DLMLL-NNYMDCVFKAGEIEKGRALFEEIKAQGLT 583

Query: 513 PDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           PDV+++S L++     G  K   KLF  +++ G+  D   + ++I  +CK
Sbjct: 584 PDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCK 633



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 125/650 (19%), Positives = 243/650 (37%), Gaps = 101/650 (15%)

Query: 29  FTNKLALYLRRAQLIDSIRL--AVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSAL 86
           FT  + ++ R  ++  ++ L   ++SNS N+   L N       +           D A 
Sbjct: 240 FTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYN-------VCIDCFGKVGKVDMAW 292

Query: 87  SIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQW 146
                LKS      +  T  ++  VL K++R  E   L  ++ S+K +     +  ++  
Sbjct: 293 KFFHELKSQ-GLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMG 351

Query: 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE------------- 193
           Y + G      S     +++  + S  +YN +++   + GK  EA+              
Sbjct: 352 YGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMKMDAAPNL 411

Query: 194 -TFRQVID--------------------EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            ++  +ID                     G  PN  T  +MI+ L    +LD A  +F  
Sbjct: 412 TSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLG 471

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER-MQEMGF 291
           L        S  +  L++G     + ++A  L  +M D G+ P   +  +L R   + G 
Sbjct: 472 LDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGR 531

Query: 292 IQGANEFLREML-----PDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDP 346
            +  ++  +EM+     PD  + N            +  D       I  G  L   +  
Sbjct: 532 KEDGHKIYKEMMHRGCSPDLMLLN------------NYMDCVFKAGEIEKGRALFEEIKA 579

Query: 347 KALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDV 406
           + L   +  +S  +  L+       T +L       ++  E   H             D 
Sbjct: 580 QGLTPDVRSYSILIHGLVKGGFSKDTYKLF------YEMKEQGLHL------------DT 621

Query: 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD 466
            A   ++    + G V    +L+ ++++ G++    T   +ID      + D A   F +
Sbjct: 622 RAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEE 681

Query: 467 DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
            ++    ++    +++YSSL+    K  R  +A  +LEE++  G+ P+  T++ L+   A
Sbjct: 682 AKSKAVDLN----VVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLD--A 735

Query: 527 LQGDEKIVQKL--FSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPD 572
           L   E+I + L  F  ++     P+   + +++   CK             +    L P+
Sbjct: 736 LVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPN 795

Query: 573 AATKELLKKSLWKEGRRKEAAAVEERCEKINDVP-SLALRGHIWAVSSAD 621
             T   +   L + G   EA  + ER +    +P S      I  +S+A+
Sbjct: 796 TITYTTMISGLARVGNVLEAKDLFERFKSSGGIPDSACYNAMIEGLSNAN 845



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 97/249 (38%), Gaps = 22/249 (8%)

Query: 375 LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
           LV  V+R  K    A H+F WV  +    H   A   +L ++AR  ++E +++++ ++  
Sbjct: 101 LVVGVIRRLKDVRVALHYFRWVERKTKQLHSPEAYNALLMLMARTRNLEYLEQILEEMSM 160

Query: 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS---SLLRTLT 491
            G     +T   ++  +  S+K   A       R       KFK    YS   +L+  L+
Sbjct: 161 AGFGPSNNTCIEMVASFVKSRKLREAFGVIETMR-------KFKFRPAYSAYTTLIGALS 213

Query: 492 KCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAY 551
                   + +L +M   G    V  F+ L+  FA +G       L   ++ N    D  
Sbjct: 214 AAHEADPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRVDAALSLLDEMKSNSFNADLV 273

Query: 552 MFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERC 599
           ++ V I  + K             L +  L+PD  T   +   L K  R  EA  + E  
Sbjct: 274 LYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEEL 333

Query: 600 EKINDVPSL 608
           +    VP +
Sbjct: 334 DSNKSVPCV 342



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 99/247 (40%), Gaps = 10/247 (4%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           IV      +   + A  ++E +K+         T  ++   LAK  R  E   L  +  S
Sbjct: 626 IVIDGFCKSGKVNKAYQLLEEMKTK-GLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKS 684

Query: 131 SKF-LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF 189
               LNV V + +L+  +   G ++       E  Q+    +T ++N ++    K  +  
Sbjct: 685 KAVDLNVVV-YSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEID 743

Query: 190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV 249
           EA+  F+ + +    PN  TY++M+  L  + K + A   +  +    +K  +  Y  ++
Sbjct: 744 EALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMI 803

Query: 250 EGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLRE--MLPDKR 307
            G   V    EAK L    +  G  P  A   A+     +  +  AN+ +    +  + R
Sbjct: 804 SGLARVGNVLEAKDLFERFKSSGGIPDSACYNAM-----IEGLSNANKAMDAYILFEETR 858

Query: 308 IKNVRYY 314
           +K  R Y
Sbjct: 859 LKGCRIY 865



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 77/189 (40%), Gaps = 4/189 (2%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A  I+E L      + N  T + L   L K++   E      ++ + K     V +  
Sbjct: 708 DEAYLILEELMQK-GLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSI 766

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           ++               W E +++    +T +Y  ++S  A+ G   EA + F +    G
Sbjct: 767 MVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSSG 826

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            IP+S  Y  MIE L N  K   A  +F    L   +  SK  ++L++     +  ++A 
Sbjct: 827 GIPDSACYNAMIEGLSNANKAMDAYILFEETRLKGCRIYSKTCVVLLDALHKADCLEQAA 886

Query: 263 ---SLLNEM 268
              ++L EM
Sbjct: 887 IVGAVLREM 895


>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g19440, chloroplastic-like [Cucumis sativus]
          Length = 799

 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 95/462 (20%), Positives = 199/462 (43%), Gaps = 33/462 (7%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           S+  V++   K GK   A+E F ++   G  PN  TY  +I  L   G+LD+A E+   +
Sbjct: 222 SFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKM 281

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFI 292
            +  ++   K Y  L+ G + +  FD+   +L+EM   G  P   +    ++   +MG I
Sbjct: 282 TVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNI 341

Query: 293 QGANEFLREMLPDKRI--KNVRYY---EDGSDDDEDENDDNNSGVRIAYGVQLKP----- 342
           +GA + +++++  K I   +V  Y   +     D+ E+ +N     ++ G+ + P     
Sbjct: 342 EGALK-IKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYS 400

Query: 343 ---WLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQ 399
              WL  K   ++   ++  ++S       +  T LVC + +  K  E    +F     +
Sbjct: 401 VVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWF--RLLE 458

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
            G          ++  L   G +    R++ ++   G+ +   T   +I  +    K + 
Sbjct: 459 KGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEG 518

Query: 460 ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
             +   ++ T  G       +  Y+ LLR L    +  DAI + +E   SG++ ++ T+ 
Sbjct: 519 CFR-LREEMTKRGIQPD---IYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYG 574

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNS 567
            +M  +      + V+ LF+ +    +E ++ ++ ++I+A+C+             + + 
Sbjct: 575 IMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSK 634

Query: 568 NLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA 609
            ++P+ AT   L   +   G  ++A  + +   K   VP++ 
Sbjct: 635 GILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVV 676



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 64/141 (45%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L++     G L+  +  W+E++    + +  +Y I+M  Y K  +  +    F +++ + 
Sbjct: 541 LLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKK 600

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
              NS  Y ++I+     G + +AL++   +    I      Y  L+ G   +   ++AK
Sbjct: 601 MELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAK 660

Query: 263 SLLNEMRDDGKFPGRAMRVAL 283
            L++EMR +G  P      AL
Sbjct: 661 HLIDEMRKEGFVPNVVCYTAL 681



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 100/223 (44%), Gaps = 14/223 (6%)

Query: 62  LNDRLLDPFIVTHA--LRSAPNA---DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQ 116
           +  R + P I T+   LR   N    D A+ + +  K++   S N  T   +     K+ 
Sbjct: 526 MTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLIS-NIHTYGIMMEGYCKAN 584

Query: 117 RNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYN 176
           R  +++ L  ++ S K    S+ +  +++ +  +G++   L      + +  L +  +Y+
Sbjct: 585 RIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYS 644

Query: 177 IVMSVYAKTGKNFEAVETFRQVIDE----GAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            ++      G     VE  + +IDE    G +PN   YT +I     LG++D+A   +  
Sbjct: 645 SLIHGVCNIG----LVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLE 700

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +    I      Y ++++G+  +   ++A +LL +M++ G  P
Sbjct: 701 MISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVP 743



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 75/185 (40%), Gaps = 7/185 (3%)

Query: 71  IVTHALRSAPNADSALSIMEALKSN---PNFSHNQSTLHALATVLAKSQRNHELKTLIGD 127
           I+  A     N  +AL ++E +KS    PN +   S +H +  +       H    LI +
Sbjct: 610 IIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKH----LIDE 665

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           +    F+   V +  L+  Y   G ++   STW E        +  +Y +++  Y K G 
Sbjct: 666 MRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGN 725

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
             +A     ++ + G +P+  TY V+         +D+A +V   +    +      Y  
Sbjct: 726 MEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTT 785

Query: 248 LVEGF 252
           LV G+
Sbjct: 786 LVHGW 790



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/178 (20%), Positives = 73/178 (41%), Gaps = 1/178 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + +  L+  +   G +E       E  +R       +YN ++      GK  +A++ + +
Sbjct: 501 ITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDE 560

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
               G I N  TY +M+E      +++    +F+ L   +++  S  Y I+++       
Sbjct: 561 FKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGN 620

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
              A  LL  M+  G  P  A   +L   +  +G ++ A   + EM  +  + NV  Y
Sbjct: 621 VAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCY 678



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 84/212 (39%), Gaps = 20/212 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   +++    M+    +   +E V+ L  +L S  M L      +II  +  +    AA
Sbjct: 565 GLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAA 624

Query: 461 LKAFHDDRTLCGPISKFKL--MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
           L+   + +      SK  L     YSSL+  +       DA ++++EM   G VP+V  +
Sbjct: 625 LQLLENMK------SKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCY 678

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSN 566
           + L+  +   G     +  +  +    + P+ + + V+I  YCK             +  
Sbjct: 679 TALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKE 738

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
           S ++PD  T  +L     K      A  V ++
Sbjct: 739 SGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQ 770



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 55/126 (43%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+     +G L        E  +R   +   +YN ++  +   GK         ++   G
Sbjct: 471 LIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRG 530

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  TY  ++  L N+GKLD A++++       +      Y I++EG+    R ++ +
Sbjct: 531 IQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVE 590

Query: 263 SLLNEM 268
           +L NE+
Sbjct: 591 NLFNEL 596


>gi|255556314|ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541506|gb|EEF43055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 719

 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 118/548 (21%), Positives = 214/548 (39%), Gaps = 81/548 (14%)

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKF-LNVSVNFMNLMQWYSTSGDL 153
           +P F+ +QS    LA  L +         L+ DI +S + +N  +  + +  W    G L
Sbjct: 140 DPLFAKDQSVKGVLANCLYRKGPVVLSVELLKDIKASGYRINEELLCILIGSW----GRL 195

Query: 154 ELVLSTWNEYRQRAKL---LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
            L       + Q + L    ST  YN V+    K+     A   F+Q+  +   P+  TY
Sbjct: 196 GLAKYCDEIFGQISFLGISPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTY 255

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
            ++I  +   G +D AL +   +  +        Y IL++GF   ++ DEA  +L  M+ 
Sbjct: 256 NILIHGVCRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRVLETMKA 315

Query: 271 --------------DGKF----PGRAMRVALERMQEMGFIQG-ANEFLREMLPDKRIKN- 310
                          G F    P +A  +A+E ++    +Q  A + L   L  K +   
Sbjct: 316 RKVSPSEATIRSFIHGVFRCVAPNKAFELAIEFIEREPVLQRLACDTLLCCLSSKNMARE 375

Query: 311 -----VRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLA 365
                 ++ + G   D       ++   IA    +K + D   + N LD +  +      
Sbjct: 376 AGALLKKFGKIGHKPD-------SATFNIAMNCLIKGF-DLNEVCNILDRFVEQ------ 421

Query: 366 DAKFVWTTRL-VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVEL 424
             KF ++T L + K L          H+F  +  + G   +V +   ++    +   ++ 
Sbjct: 422 GMKFGFSTYLALIKALYMAGKVTEGNHYFNQMV-KDGLLCNVCSYNMVIDCFCKTSMMDK 480

Query: 425 VDRLIAKLRSDGMRLPFSTIRLIIDFYG----ISKKADAAL----KAFHDDRTLCGPISK 476
                 +++  G+     T   +ID Y     I K  D  +      F  D         
Sbjct: 481 ATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLLVMLLEHGFKPD--------- 531

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
              +  +SS++  L + K+  DA+    EM+  G+ P+  T++ L++   + GD     K
Sbjct: 532 ---IFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMK 588

Query: 537 LFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLW 584
           L   ++ +G+ PD + F  LIQ++C+             + +  L+PD  T     K   
Sbjct: 589 LLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFC 648

Query: 585 KEGRRKEA 592
           + GR  EA
Sbjct: 649 QSGRFNEA 656



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 53/102 (51%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YNI++      G    +++  R++  +G  P+  ++  +I+    +GK++ A ++FS++
Sbjct: 569 TYNILIHSLCIIGDVPRSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSM 628

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             + +   +  Y+  ++ F    RF+EAK L   M  +G  P
Sbjct: 629 LSLGLIPDNYTYVAFIKVFCQSGRFNEAKELFLSMEANGCMP 670


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 111/477 (23%), Positives = 181/477 (37%), Gaps = 116/477 (24%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAI-PNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           +YN+++S Y K G+   A+     V+D  ++ P+  TY  ++  L + GKL  A+EV   
Sbjct: 174 TYNVMISGYCKAGEINNAL----SVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDR 229

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGF 291
           +           Y IL+E          A  LL+EMRD G  P      V +  + + G 
Sbjct: 230 MLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGR 289

Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKP------WLD 345
           +  A +FL +M       NV                      I + + L+       W+D
Sbjct: 290 LDEAIKFLNDMPSSGCQPNV----------------------ITHNIILRSMCSTGRWMD 327

Query: 346 P-KALANTLDE-WSPEVVSLLADAKFVWTTRLVCKVL-------RHFKSPETA-----WH 391
             K LA+ L + +SP VV+      F+    L+ + +       +H   P +       H
Sbjct: 328 AEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLH 387

Query: 392 FFC-------WVAY-----QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
            FC        + Y       G   D+     MLT L + G VE    ++ +L S G   
Sbjct: 388 GFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKG--- 444

Query: 440 PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDA 499
                                          C P+     ++ Y++++  L K  +   A
Sbjct: 445 -------------------------------CSPV-----LITYNTVIDGLAKAGKTGKA 468

Query: 500 INVLEEMIFSGIVPDVQTFSGLMYHFALQG--DEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           I +L+EM    + PD  T+S L+   + +G  DE I  K F    + G+ P+A  F  ++
Sbjct: 469 IKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAI--KFFHEFERMGIRPNAVTFNSIM 526

Query: 558 QAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA-AAVEERCEK 601
              CK            ++ N    P+  +  +L + L  EG  KEA   + E C K
Sbjct: 527 LGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNK 583



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 9/121 (7%)

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           LR + +     +    LE M++ G VPD+   + L+  F   G  +   K+  ++  +G 
Sbjct: 109 LRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGA 168

Query: 547 EPDAYMFKVLIQAYCK---------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
            PD   + V+I  YCK          L   ++ PD  T   + +SL   G+ K+A  V +
Sbjct: 169 VPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLD 228

Query: 598 R 598
           R
Sbjct: 229 R 229



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 90/216 (41%), Gaps = 12/216 (5%)

Query: 62  LNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSN---PNFSHNQSTLHALATVLA 113
           + DR   P +VT+      +      D A+  +  + S+   PN   +   L ++ +   
Sbjct: 265 MRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCS--- 321

Query: 114 KSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE 173
            + R  + + L+ D+    F    V F  L+ +    G L   +    +  Q     ++ 
Sbjct: 322 -TGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSL 380

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SYN ++  + K  K   A+E   +++  G  P+  TY  M+  L   GK++ A+E+ + L
Sbjct: 381 SYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQL 440

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
                      Y  +++G     +  +A  LL+EMR
Sbjct: 441 SSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMR 476



 Score = 46.6 bits (109), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 83/199 (41%), Gaps = 1/199 (0%)

Query: 74  HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKF 133
           H        D A+  +E + S   +  +  T + + T L K  +  +   ++  +SS   
Sbjct: 387 HGFCKEKKMDRAIEYLERMVSRGCYP-DIVTYNTMLTALCKDGKVEDAVEILNQLSSKGC 445

Query: 134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE 193
             V + +  ++   + +G     +   +E R +     T +Y+ ++   ++ GK  EA++
Sbjct: 446 SPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIK 505

Query: 194 TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
            F +    G  PN+ T+  ++  L    + D A++    +     K     Y IL+EG  
Sbjct: 506 FFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLA 565

Query: 254 GVERFDEAKSLLNEMRDDG 272
                 EA  LLNE+ + G
Sbjct: 566 YEGMAKEALELLNELCNKG 584



 Score = 46.2 bits (108), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 21/147 (14%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y+ ++    K     +A++VL+ M  S   PDV T++ ++      G  K   ++  
Sbjct: 172 VITYNVMISGYCKAGEINNALSVLDRMSVS---PDVVTYNTILRSLCDSGKLKQAMEVLD 228

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEG 587
            + Q    PD   + +LI+A C+             + +    PD  T  +L   + KEG
Sbjct: 229 RMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEG 288

Query: 588 RRKEAAAVEERCEKINDVPSLALRGHI 614
           R  EA         +ND+PS   + ++
Sbjct: 289 RLDEAIKF------LNDMPSSGCQPNV 309



 Score = 45.8 bits (107), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 59/138 (42%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+      G L+  +   N+        +  ++NI++     TG+  +A +    
Sbjct: 275 VTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLAD 334

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++ +G  P+  T+ ++I  L   G L  A+++   +P    +  S  Y  L+ GF   ++
Sbjct: 335 MLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKK 394

Query: 258 FDEAKSLLNEMRDDGKFP 275
            D A   L  M   G +P
Sbjct: 395 MDRAIEYLERMVSRGCYP 412



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 72/166 (43%), Gaps = 1/166 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  ++      G +E  +   N+   +       +YN V+   AK GK  +A++   +
Sbjct: 415 VTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDE 474

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +  +   P++ TY+ ++  L   GK+D A++ F     M I+  +  +  ++ G     +
Sbjct: 475 MRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQ 534

Query: 258 FDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREM 302
            D A   L  M + G  P   +  + +E +   G  + A E L E+
Sbjct: 535 TDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNEL 580


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 106/490 (21%), Positives = 198/490 (40%), Gaps = 41/490 (8%)

Query: 77  RSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNV 136
           R   +A  A+++M  LK  P FS     + ALA    + +R  EL   + ++     +++
Sbjct: 24  RRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEA-RRPERALELLRQMQEVGYEVGVHL 82

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
              F  L++  +  G +   L+  +E +          YN+ +  + K G    A + F 
Sbjct: 83  ---FTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFH 139

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           ++  +G  P+  +YT MI  L   G+L  A E+F+ +   R    +  Y  ++ G+    
Sbjct: 140 ELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAG 199

Query: 257 RFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRI-KNVRYYE 315
           RF++A  LL  +R+ G  P                +   N  L  +   +++ + +  +E
Sbjct: 200 RFEDAYKLLERLRERGCIPS---------------VVSFNSILTCLGKKRKVDEALSLFE 244

Query: 316 DGSDDDEDENDDNNSGV-RIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTR 374
               D E  +   N  +  +  G +++           LDE   E  SL  +   + T  
Sbjct: 245 VMKKDAEPNSSTYNIIIDMLCLGGRVEEAY------RILDEM--EHASLFPN---LLTVN 293

Query: 375 LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
           ++   L   +  E A+  F   A Q G   D      ++  L + G V+   RL  K+  
Sbjct: 294 IMVDRLCKARKLEEAYKIF-ESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLD 352

Query: 435 DGMRL-PFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTK 492
            G    P     LI +F+   +K D   K F +  R  C P      + L ++ +  + K
Sbjct: 353 AGHNANPVVYTSLIRNFFIHGRKEDGH-KVFKELIRRGCKPD-----LTLLNTYMDCVFK 406

Query: 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYM 552
                    + E++   G +PDV+++S L++     G  +    +F  ++Q G   DA  
Sbjct: 407 AGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARA 466

Query: 553 FKVLIQAYCK 562
           +  ++  +CK
Sbjct: 467 YNAVVDGFCK 476



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 71/154 (46%)

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
           + +  DI S  FL    ++  L+   + +G      + ++  +Q+   L   +YN V+  
Sbjct: 414 RMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDG 473

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
           + K+GK  +A E   ++ ++   P   TY  +++ L  + +LD A  +F       I+  
Sbjct: 474 FCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELN 533

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              Y  L++GF  V R DEA  +L EM   G  P
Sbjct: 534 VVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTP 567



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 103/542 (19%), Positives = 198/542 (36%), Gaps = 51/542 (9%)

Query: 29  FTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNAD 83
           FT  +    R  Q+ D++ L      S           L+P IV +         A N D
Sbjct: 83  FTTLVRALAREGQVADALALVDEVKGS----------CLEPDIVLYNVCIDCFGKAGNVD 132

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL 143
            A      LK+      +  +  ++  VL K+ R  E + L   + + + +  +  +  +
Sbjct: 133 MACKFFHELKAQ-GLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTM 191

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
           +  Y ++G  E         R+R  + S  S+N +++   K  K  EA+  F +V+ + A
Sbjct: 192 IMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLF-EVMKKDA 250

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
            PNS TY ++I+ L   G+++ A  +   +    +        I+V+      + +EA  
Sbjct: 251 EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYK 310

Query: 264 LLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDD-- 320
           +       G  P      +L + + + G +  A     +ML      N   Y     +  
Sbjct: 311 IFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFF 370

Query: 321 DEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVL 380
                +D +   +       KP L    L NT        +  +  A  V   R++ + +
Sbjct: 371 IHGRKEDGHKVFKELIRRGCKPDL---TLLNTY-------MDCVFKAGEVEKGRMIFEDI 420

Query: 381 RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP 440
           R +                 G+  DV +   ++  L + G       +   ++  G  L 
Sbjct: 421 RSY-----------------GFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALD 463

Query: 441 FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAI 500
                 ++D +  S K   A +   + +  C   +    +  Y +++  L K  R  +A 
Sbjct: 464 ARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPT----VATYGAIVDGLAKIDRLDEAY 519

Query: 501 NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
            + EE    GI  +V  +S L+  F   G       +   + + G+ P+ Y +  L+ A 
Sbjct: 520 MLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDAL 579

Query: 561 CK 562
            K
Sbjct: 580 VK 581



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/205 (19%), Positives = 90/205 (43%), Gaps = 1/205 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+ H L  A  A    +I  A+K    F+ +    +A+     KS + H+   ++ ++  
Sbjct: 434 ILIHGLTKAGQARETSNIFHAMKQQ-GFALDARAYNAVVDGFCKSGKVHKAYEILEEMKE 492

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                    +  ++   +    L+     + E + +   L+   Y+ ++  + K G+  E
Sbjct: 493 KCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDE 552

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A     +++ +G  PN  T+  +++ LV   +++ AL  F ++  M+    +  Y IL+ 
Sbjct: 553 AYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILIN 612

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP 275
           G   V+++++A     +M+  G  P
Sbjct: 613 GLCRVQKYNKAFVFWQDMQKQGLVP 637



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 108/532 (20%), Positives = 203/532 (38%), Gaps = 53/532 (9%)

Query: 49  AVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQS 103
           A R   +  L   L +R   P +V+       L      D ALS+ E +K +     N S
Sbjct: 198 AGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDA--EPNSS 255

Query: 104 TLHALATVLAKSQRNHELKTLIGDIS-SSKFLNV-SVNFMNLMQWYSTSGDLELVLSTWN 161
           T + +  +L    R  E   ++ ++  +S F N+ +VN M  +     +  LE     + 
Sbjct: 256 TYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIM--VDRLCKARKLEEAYKIFE 313

Query: 162 EYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG 221
              QR       +Y  ++    K G+  EA   F +++D G   N   YT +I +    G
Sbjct: 314 SASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHG 373

Query: 222 KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV----ERFDEAKSLLNEMRDDGKFPG- 276
           + +   +VF  L    I+R  K  L L+  ++         ++ + +  ++R  G  P  
Sbjct: 374 RKEDGHKVFKEL----IRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDV 429

Query: 277 RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAY 336
           R+  + +  + + G  +  +     M       + R Y    D         +  V  AY
Sbjct: 430 RSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVD-----GFCKSGKVHKAY 484

Query: 337 GVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWV 396
            +              L+E   + V        V T   +   L      + A+  F   
Sbjct: 485 EI--------------LEEMKEKCVQ-----PTVATYGAIVDGLAKIDRLDEAYMLF-EE 524

Query: 397 AYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK 456
           A   G   +V     ++    + G ++    ++ ++   G+     T   ++D    +++
Sbjct: 525 AKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEE 584

Query: 457 ADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
            + AL  F   + +  P + +     YS L+  L + ++   A    ++M   G+VP+V 
Sbjct: 585 INEALVCFQSMKEMKCPPNTYT----YSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVV 640

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSN 568
           T++ ++   A  G+      LF   + NG  PDA  F  LI+     +SN+N
Sbjct: 641 TYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEG----MSNAN 688


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 97/508 (19%), Positives = 191/508 (37%), Gaps = 59/508 (11%)

Query: 143 LMQWYSTSGDLELVLSTWNEY--RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
           ++Q    +GDL++ L+        + A      SYN+V++   ++GK  +A++ F +++D
Sbjct: 163 VVQACVAAGDLDVALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVD 222

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
            G  PN  TY  MI+  V  G L++   +   +     K     Y +L+ G     R DE
Sbjct: 223 MGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDE 282

Query: 261 AKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSD 319
            ++L++EM      P G    +  + +   G  Q       E L                
Sbjct: 283 TRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKK-------------- 328

Query: 320 DDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEW----SPEVVSLLADAKFVWTTRL 375
                            GV L  +     L     +     + +V  +L     V TT +
Sbjct: 329 -----------------GVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVI 371

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTH---DVYALEKMLTILARHGHVELVDRLIAKL 432
              ++  +         FC +  Q    H   D      ++  L +   V   + L+ ++
Sbjct: 372 YNTLINGYCQVRDLRGAFC-IFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEM 430

Query: 433 RSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK 492
              G+     T   +ID YG + + +       D +   G  S    ++ + S+++   K
Sbjct: 431 EKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQK-GIKSD---VISFGSVVKAFCK 486

Query: 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYM 552
             +  +A+ +L++MI+  + P+ Q ++ ++  +   GD +    L   ++ +GV      
Sbjct: 487 NGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVT 546

Query: 553 FKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCE 600
           + +L++  C+             L N  L PD  +   +  +   +G   +A  + +   
Sbjct: 547 YNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMN 606

Query: 601 KINDVPSLALRGHIWAVSSADLTRVHSI 628
           K    P+L    H    + A   RVH +
Sbjct: 607 KYGIRPTLR-TCHTLVSALASAGRVHDM 633



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 86/192 (44%), Gaps = 1/192 (0%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL 143
            A  I E +KS  +   +  T +AL   L K +   + + L+ ++  S        F  L
Sbjct: 387 GAFCIFEQMKSR-HIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTL 445

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
           +  Y T+G LE   +  ++ +Q+       S+  V+  + K GK  EAV     +I +  
Sbjct: 446 IDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDV 505

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
            PN++ Y  +I+  +  G  + AL +   +    +  +   Y +L++G     + DEA+ 
Sbjct: 506 APNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEE 565

Query: 264 LLNEMRDDGKFP 275
           L+  +R+ G  P
Sbjct: 566 LIYTLRNQGLRP 577



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 34/170 (20%), Positives = 73/170 (42%), Gaps = 3/170 (1%)

Query: 102 QSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN---FMNLMQWYSTSGDLELVLS 158
           +S + +  +V+    +N ++   +  +    + +V+ N   + +++  Y  SGD E  L 
Sbjct: 471 KSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALL 530

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
              + +      S  +YN+++    ++ +  EA E    + ++G  P+  +Y  +I    
Sbjct: 531 LVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACC 590

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           N G  D ALE+   +    I+ T +    LV       R  + + L  +M
Sbjct: 591 NKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQM 640


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 93/484 (19%), Positives = 189/484 (39%), Gaps = 67/484 (13%)

Query: 144 MQWYSTSGDL-ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           +Q    +GDL E V       R  A   +  SYN+V++   + G+  +AVE F ++ +  
Sbjct: 167 VQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERA 226

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +PN  TY  MI+  +  G L++   +   +    +K  +  Y +L+ G     R  E  
Sbjct: 227 VLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETS 286

Query: 263 SLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDE 322
           +LL+EM                               ++M+PD    ++ +      D  
Sbjct: 287 ALLDEMAS-----------------------------QKMVPDGFTYSILF------DGL 311

Query: 323 DENDDNNS-----GVRIAYGVQLKPWLDPKALANTLDEW----SPEVVSLLADAKFVWTT 373
             N D+ +     G  +  GV +  +     L     +     + EV+  L +A  V  T
Sbjct: 312 SRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLV-PT 370

Query: 374 RLVCKVL--RHFKSPETAWHFFCWVAYQPGYTH-DVYALEKMLTILARHGHVELVDRLIA 430
           R++   L   + ++ E    F  +   +  +   D      ++  L +   +     L+ 
Sbjct: 371 RVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLM 430

Query: 431 KLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLL-YSSLLRT 489
           +++ +G+     T   +ID YG + + +       + +      +  K  ++ Y S++  
Sbjct: 431 EMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQE-----NGLKPNVVSYGSIVNA 485

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
             K  +  +A+ +L++M    ++P+ Q ++ ++  +   G       L   ++ NG+ P 
Sbjct: 486 FCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPS 545

Query: 550 AYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
              + +LI+  C              LSN  L+PDA +   L  +    G   +A  +++
Sbjct: 546 IVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQ 605

Query: 598 RCEK 601
           R  K
Sbjct: 606 RMHK 609



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 79/175 (45%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T + L + L ++ R  E   L+ +++S K +     +  L    S +GD + +LS +
Sbjct: 265 NAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLF 324

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            +  +    +   + +I+++   K GK   A E  + +++ G +P    Y  +I      
Sbjct: 325 GKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQT 384

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           G+L+ A   F  +    IK     Y  L+ G    ER   A+ LL EM+D+G  P
Sbjct: 385 GELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNP 439



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 58  LSSLLNDRLLDPFIVTHALRSA----PNADSALSIMEALKSNPNFSHNQSTLHALATVLA 113
           L SL+N  L+   ++ + L +        + A S    +KS  +   +  T +AL   L 
Sbjct: 359 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSR-HIKPDHITYNALINGLC 417

Query: 114 KSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE 173
           K++R    + L+ ++  +        F  L+  Y  +G LE      +E ++     +  
Sbjct: 418 KAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVV 477

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SY  +++ + K GK  EAV     +  +  +PN++ Y  +I+  V  G  D A  +   +
Sbjct: 478 SYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKM 537

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               I  +   Y +L++G     +  EA+ ++N + +    P
Sbjct: 538 KSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIP 579



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 1/134 (0%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           S  +YN+++       +  EA E    + +   IP++ +Y  +I      G +D AL++ 
Sbjct: 545 SIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQ 604

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR-VALERMQEM 289
             +    IK T + Y  L+ G  G  R  E + L  +M  +   P  A+  + +E   + 
Sbjct: 605 QRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKY 664

Query: 290 GFIQGANEFLREML 303
           G    A +  +EML
Sbjct: 665 GNEIKAEDLRKEML 678


>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 642

 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 100/492 (20%), Positives = 209/492 (42%), Gaps = 46/492 (9%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVS-VNFMNLMQWYSTSGDLEL 155
           NF H+ ST  AL   L +++   E+   I ++  + +++V  V    L++    +  +  
Sbjct: 121 NFQHDCSTYMALIRCLEEARLYGEMYRTIQEVVRNTYVSVGPVVLSELVKALGRAKMVSK 180

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG-AIPNSRTYTVMI 214
            LS + + + R    ++ +YN V+ +  + G++ +  E + ++ +EG   P++ TY+ +I
Sbjct: 181 ALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALI 240

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
                LG+ DSA+ +F  +    ++ T K Y  L+  +  V + ++A  L  EM+  G  
Sbjct: 241 SSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCS 300

Query: 275 PGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDD-------DEDEND 326
           P       L + + + G ++ A +  + ML D    +V +  +  +        +E  N 
Sbjct: 301 PTVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMNILGKVGRLEELTNV 360

Query: 327 DNNSG------VRIAYGVQLKPWLDPKALANTLDEW---------SPE--VVSLLADAKF 369
            N  G        ++Y   +K   + KA  + +  W         SP     S+L D  +
Sbjct: 361 FNEMGTWRCTPTVVSYNTVIKALFESKAPVSEVSSWFDKMKADGVSPSEFTYSILIDG-Y 419

Query: 370 VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
             T R V K L   +  +      C  AY             ++  L +    E  + L 
Sbjct: 420 CKTNR-VEKALLLLEEMDEKGFPPCPAAYC-----------SLINALGKAKRYEAANELF 467

Query: 430 AKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFKLMLLYSSLLR 488
            +L+ +   +      ++I  +G   K   A+  F++ +    GP      +  Y++L+ 
Sbjct: 468 KELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPD-----VYAYNALMS 522

Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548
            + K     +A ++L +M  +G   D+ + + ++  FA  G  +   ++F  ++  G++P
Sbjct: 523 GMVKAGMVNEANSLLRKMEENGCTADINSHNIILNGFARTGVPRRAIEMFETMKHCGIKP 582

Query: 549 DAYMFKVLIQAY 560
           D   +  L+  +
Sbjct: 583 DGVTYNTLLGCF 594



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 81/191 (42%), Gaps = 3/191 (1%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           + AL ++E +     F    +   +L   L K++R      L  ++  + F NVS     
Sbjct: 426 EKALLLLEEMDEK-GFPPCPAAYCSLINALGKAKRYEAANELFKELKEN-FGNVSSRVYA 483

Query: 143 LM-QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
           +M + +   G L   +  +NE + +       +YN +MS   K G   EA    R++ + 
Sbjct: 484 VMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMVNEANSLLRKMEEN 543

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G   +  ++ +++      G    A+E+F  +    IK     Y  L+  F     F+EA
Sbjct: 544 GCTADINSHNIILNGFARTGVPRRAIEMFETMKHCGIKPDGVTYNTLLGCFAHAGMFEEA 603

Query: 262 KSLLNEMRDDG 272
             L+ EM+D G
Sbjct: 604 ARLMREMKDKG 614



 Score = 43.5 bits (101), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 93/253 (36%), Gaps = 20/253 (7%)

Query: 355 EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT 414
           +W P+    L   K     RLV  +L           FF W   +  + HD      ++ 
Sbjct: 75  KWGPDAEKALEVLKLKVDHRLVRSILEIDVEINVKIQFFKWAGKRRNFQHDCSTYMALIR 134

Query: 415 ILARHG-HVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CG 472
            L     + E+   +   +R+  + +    +  ++   G +K    AL  F+  +   C 
Sbjct: 135 CLEEARLYGEMYRTIQEVVRNTYVSVGPVVLSELVKALGRAKMVSKALSVFYQAKGRKCK 194

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSG-IVPDVQTFSGLMYHFALQGDE 531
           P S       Y+S++  L +  +      V  EM   G   PD  T+S L+  +   G  
Sbjct: 195 PTSS-----TYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRN 249

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELL 579
               +LF  ++ N ++P   ++  L+  Y K             +  +   P   T   L
Sbjct: 250 DSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTEL 309

Query: 580 KKSLWKEGRRKEA 592
            K L K GR +EA
Sbjct: 310 IKGLGKAGRVEEA 322



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 100/522 (19%), Positives = 194/522 (37%), Gaps = 95/522 (18%)

Query: 72  VTHALRSAPNADSALSIM---EALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDI 128
           +  AL  A     ALS+    +  K  P  S   S +  L     + ++ HE+ T +   
Sbjct: 168 LVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQE-GQHEKVHEVYTEM--C 224

Query: 129 SSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN 188
           +       ++ +  L+  Y   G  +  +  ++E +      + + Y  ++ +Y K GK 
Sbjct: 225 NEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKV 284

Query: 189 FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL--MRIKRTSKQYL 246
            +A++ F ++   G  P   TYT +I+ L   G+++ A +++  +    +         L
Sbjct: 285 EKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNL 344

Query: 247 ILVEGFVGVERFDEAKSLLNEMRD------------------DGKFPGRAMRVALERMQE 288
           + + G VG  R +E  ++ NEM                    + K P   +    ++M+ 
Sbjct: 345 MNILGKVG--RLEELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPVSEVSSWFDKMKA 402

Query: 289 MGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKA 348
            G     +EF   +L D   K  R  E      E+ ++        AY           +
Sbjct: 403 DGV--SPSEFTYSILIDGYCKTNR-VEKALLLLEEMDEKGFPPCPAAYC----------S 449

Query: 349 LANTLD-----EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSP---ETAWHFFCWVAYQP 400
           L N L      E + E+   L +     ++R+   +++HF        A   F  +  Q 
Sbjct: 450 LINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQ- 508

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY---GISKKA 457
           G   DVYA   +++ + + G V   + L+ K+  +G     ++  +I++ +   G+ ++A
Sbjct: 509 GSGPDVYAYNALMSGMVKAGMVNEANSLLRKMEENGCTADINSHNIILNGFARTGVPRRA 568

Query: 458 DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
                                                     I + E M   GI PD  T
Sbjct: 569 ------------------------------------------IEMFETMKHCGIKPDGVT 586

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
           ++ L+  FA  G  +   +L   ++  G E DA  +  ++ A
Sbjct: 587 YNTLLGCFAHAGMFEEAARLMREMKDKGFEYDAITYSSILDA 628


>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
 gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
          Length = 833

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 95/441 (21%), Positives = 176/441 (39%), Gaps = 51/441 (11%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SYN V++ + + G+  +A   F Q+ID G  P+  TY  +I+ L     +D A  VF  +
Sbjct: 306 SYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQM 365

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
               +K ++  Y  L+ G++   ++ E   LL EM      P                  
Sbjct: 366 LDKGVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEP------------------ 407

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQL-----KPWLDPK- 347
             + F+  +L D   KN R  E  +  D            I   V +     +  L P  
Sbjct: 408 --DCFIYALLLDYLCKNGRCTEARNIFDSVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNV 465

Query: 348 ----ALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYT 403
               AL + L +      ++L   + +     +C V +  K+ E  +          G  
Sbjct: 466 VNYGALIDALCKLGRVDDAILKFNQMINEVYGLCTVEKWEKAEELVFEML-----DQGIR 520

Query: 404 HDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKA 463
            DV     ++  L R G V    RLI  +   G+R    +   ++D + ++ + D A K 
Sbjct: 521 LDVVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKL 580

Query: 464 FHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
                ++    ++F     Y++LL    K +R  DA ++L EM+ +G  PDV T++ +++
Sbjct: 581 LDVMVSIGLKPNEFT----YNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILH 636

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMP 571
                G     ++L+  +  +  + D Y + +++   CK             L +  L  
Sbjct: 637 GLFQTGRFSEAKELYLNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQL 696

Query: 572 DAATKELLKKSLWKEGRRKEA 592
              T  ++  +L K G++++A
Sbjct: 697 HIITFNIMIGALLKGGKKEDA 717



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 97/472 (20%), Positives = 185/472 (39%), Gaps = 71/472 (15%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK-------- 222
           S  +YN ++  Y  TGK  E V    ++      P+   Y +++++L   G+        
Sbjct: 373 SNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYLCKNGRCTEARNIF 432

Query: 223 -------------LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
                        +D A+ +F  +    +      Y  L++    + R D+A    N+M 
Sbjct: 433 DSVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGRVDDAILKFNQMI 492

Query: 270 DDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIK-NVRYYEDGSDD--DEDEND 326
           ++    G       E+ +E+ F         EML D+ I+ +V  +     D   E    
Sbjct: 493 NE--VYGLCTVEKWEKAEELVF---------EML-DQGIRLDVVVFNTLMCDLCREGRVM 540

Query: 327 DNNSGVRIAYGVQLKP-------WLDPKALANTLDEWSP---EVVSL-LADAKFVWTTRL 375
           +    + +   V ++P        +D   L    DE +     +VS+ L   +F + T L
Sbjct: 541 EAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLL 600

Query: 376 --VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
              CK  R     + A+     +    G T DV     +L  L + G       L   + 
Sbjct: 601 HGYCKARRI----DDAYSLLREMLMN-GPTPDVVTYNTILHGLFQTGRFSEAKELYLNMI 655

Query: 434 SDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKC 493
           +   +    T  +I++    +   D A K F   ++LC    +  + + ++ ++  L K 
Sbjct: 656 NSRTQWDMYTYNIILNGLCKNNCVDEAFKMF---QSLCSKGLQLHI-ITFNIMIGALLKG 711

Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
            +  DA+++   +   G+VPDV+T+  +  +   +G  + +  LFS + +NG  P++ M 
Sbjct: 712 GKKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELGVLFSAMEENGTAPNSRML 771

Query: 554 KVLIQ------------AYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
             L++            AY   L   N   +A+T  +L  SL+  G  ++ A
Sbjct: 772 NALVRRFLHRGDISRAGAYLSKLDEKNFSLEASTASML-ISLYSRGEYQQLA 822



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 82  ADSALSIMEALKSNPN-FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNF 140
           A   L +M ++   PN F++N + LH              L+ ++ +  +   +  +   
Sbjct: 577 AAKLLDVMVSIGLKPNEFTYN-TLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTIL 635

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
             L Q    S   EL L+  N   Q        +YNI+++   K     EA + F+ +  
Sbjct: 636 HGLFQTGRFSEAKELYLNMINSRTQ----WDMYTYNIILNGLCKNNCVDEAFKMFQSLCS 691

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
           +G   +  T+ +MI  L+  GK + A+++F+ +    +    + Y ++ E  +     +E
Sbjct: 692 KGLQLHIITFNIMIGALLKGGKKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEE 751

Query: 261 AKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREM 302
              L + M ++G  P   M  AL  R    G I  A  +L ++
Sbjct: 752 LGVLFSAMEENGTAPNSRMLNALVRRFLHRGDISRAGAYLSKL 794


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 99/453 (21%), Positives = 173/453 (38%), Gaps = 41/453 (9%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           SV +  L+    + G LE  +    E  Q+    +  +Y I +      G + EAVE   
Sbjct: 272 SVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLG 331

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           ++   G +PN +T+T +I  L   GK + A+ ++  +    +  T+  Y  L+       
Sbjct: 332 KMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEG 391

Query: 257 RFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
           RF+ A ++   M   G  P  +     ++    MG IQ A     +ML      NV  Y 
Sbjct: 392 RFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYN 451

Query: 316 DGSDDDEDENDDNNSG--VRIAYGVQLKPWLDPKALANTLDEWS-PEVVSLLA-DAKFVW 371
                   + + NN+   + I  G  LKP           D W+  E++S  +   K   
Sbjct: 452 TLIYGYCKQGNLNNAMRLLEIMKGNGLKP-----------DAWTYTELISGFSRGGKLEH 500

Query: 372 TTRLVCKVLRHFKSP------------------ETAWHFFCWVAYQPGYTHDVYALEKML 413
            T L   ++ H  SP                  + A   F W   + G          M+
Sbjct: 501 ATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALF-WKMVESGNLPSSQTYNVMI 559

Query: 414 TILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGP 473
           +  ++   +   +    K+   G+     T    ID    + +   A K FH+       
Sbjct: 560 SGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKR--- 616

Query: 474 ISKFKLMLLYSSLLRTLTKCKRDFDA--INVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
            + F  +  YSSL+  L +  R  DA   N+L  +   G  P+V T++ L+     +G  
Sbjct: 617 -NYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRC 675

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYL 564
               +L   +++ G++P   +++ L+   CK L
Sbjct: 676 YEADQLVVSMQKKGLQPSEEIYRALLIGECKNL 708



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 94/485 (19%), Positives = 174/485 (35%), Gaps = 76/485 (15%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++N ++++  K G+  EA      +    A PN+ TYT +I        LD A  +F  +
Sbjct: 204 TFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRM 263

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFI 292
                   S  Y  L+ G     R +EA  +L EM   G  P      + L  + + G  
Sbjct: 264 VKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCS 323

Query: 293 QGANEFLREMLPDKRIKNVRYYE---DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKAL 349
             A E L +M     + N++ +     G   D            IA G+  K   D   L
Sbjct: 324 SEAVELLGKMKKRGCVPNIQTFTALISGLSRD--------GKFEIAIGLYHKMLAD--GL 373

Query: 350 ANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWH-----FFCWVA------- 397
             T   ++  +  L  + +F     +   +L H   P T  +      FC +        
Sbjct: 374 VPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMV 433

Query: 398 -----YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID--- 449
                 + G + +V     ++    + G++    RL+  ++ +G++    T   +I    
Sbjct: 434 IFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFS 493

Query: 450 -----------FYGISKKA--------DAALKAFHDDRTLCGPISKFKLML--------- 481
                      FYG+ +           A +  + +   +   ++ F  M+         
Sbjct: 494 RGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQ 553

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
            Y+ ++   +K     +A N   +M+  G++P+V T++  +      G   +  K+F  +
Sbjct: 554 TYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEM 613

Query: 542 RQNGVEPDAYMFKVLIQAYCK--------------YLSNSNLMPDAATKELLKKSLWKEG 587
            +    P+ Y +  LI   C+               L++    P+  T   L K L  EG
Sbjct: 614 EKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEG 673

Query: 588 RRKEA 592
           R  EA
Sbjct: 674 RCYEA 678



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 88/212 (41%), Gaps = 1/212 (0%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T +AL   L    R     T+   + S   L  +  +  +++ +   GD++  +  +++ 
Sbjct: 379 TYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKM 438

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
            +     +  +YN ++  Y K G    A+     +   G  P++ TYT +I      GKL
Sbjct: 439 LKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKL 498

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVA 282
           + A  +F  +    I      Y  +++G+  + + D+A +L  +M + G  P  +   V 
Sbjct: 499 EHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVM 558

Query: 283 LERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
           +    +   I  A  F  +M+    + NV  Y
Sbjct: 559 ISGFSKTNSISEAENFCGKMVKQGLLPNVITY 590



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 75/183 (40%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T  AL + L++  +      L   + +   +  +V +  L+      G  E   + +
Sbjct: 341 NIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIF 400

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
                   L ST++YN ++  +   G   +A+  F +++  G+ PN  TY  +I      
Sbjct: 401 KWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQ 460

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR 280
           G L++A+ +   +    +K  +  Y  L+ GF    + + A SL   M + G  P     
Sbjct: 461 GNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTY 520

Query: 281 VAL 283
            A+
Sbjct: 521 TAI 523



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 80/209 (38%), Gaps = 16/209 (7%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           Q G    VY     L  L   G       L+ K++  G      T   +I       K +
Sbjct: 300 QKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFE 359

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
            A+  +H  + L   +      + Y++L+  L    R   A  + + M+  G +P  QT+
Sbjct: 360 IAIGLYH--KMLADGL--VPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTY 415

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSN 566
           + ++  F L GD +    +F  + + G  P+   +  LI  YCK             +  
Sbjct: 416 NEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKG 475

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEAAAV 595
           + L PDA T   L     + G+ + A ++
Sbjct: 476 NGLKPDAWTYTELISGFSRGGKLEHATSL 504


>gi|255566084|ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536757|gb|EEF38398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1016

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 94/474 (19%), Positives = 196/474 (41%), Gaps = 40/474 (8%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L KS +  E + +   +S    +  S+ +  L+  Y   GD+E V S   E  ++    +
Sbjct: 353 LFKSSKPKEAEDMFRALSKLNLIPNSITYTALIDGYCKVGDMERVESLLQEMEEKHINPN 412

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
             +Y+ +++ Y K G   EA+   ++++D+  IPN+  Y ++I+     GK + A ++++
Sbjct: 413 VITYSSIINGYTKKGILDEAINVMKKMLDQNIIPNAYVYAILIDGYCKAGKQEIATDLYN 472

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD--------------DGKFPGR 277
            + L  +K  +  + +LV      +R DEA+ LL ++                DG F   
Sbjct: 473 EMKLSGLKVNNVLFDVLVNNLKRGKRMDEAEELLKDVTSRGLLLDHVNYTSLMDGFFKAG 532

Query: 278 AMRVALERMQEMGF------IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSG 331
               AL  ++EM        +   N  +  +L   + +    Y    +     N      
Sbjct: 533 KESAALNMVEEMTEKSIPFDVVTYNVLINGLLEHGKYEAKSVYSGMIEMGLAPN------ 586

Query: 332 VRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWH 391
            +  Y + +K +     L N L+ W+      +  +     T +V   L      E A +
Sbjct: 587 -QATYNIMIKAYCKQGELDNALELWNEMKSHKIMPSSITCNTLVVG--LSEAGEIEKAMN 643

Query: 392 FFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL---PFSTIRLII 448
               ++   G   ++     +L   ++ G    V ++  +L   G+++    ++ + ++ 
Sbjct: 644 VLNEMSVM-GIHPNLVIHRVLLNASSKSGKANAVLQMHEQLVDMGLKINQEAYNNLIVVF 702

Query: 449 DFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF 508
               ++KKA + LK    D  +   ++       Y++L+R   +      A+    +M+ 
Sbjct: 703 CRLRMTKKATSVLKYMIRDGFVADTVT-------YNALIRGYCESSHVKKALATYTQMLN 755

Query: 509 SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            G+ P++ T++ L+      G      +LF  +++NG+ PDA  +  LI  Y K
Sbjct: 756 EGVSPNIVTYNLLLGGLLGAGLMAERDELFDKMKENGLNPDASTYDTLISGYGK 809



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 7/212 (3%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N      L   L + +R  E + L+ D++S   L   VN+ +LM  +  +G     L+  
Sbjct: 482 NNVLFDVLVNNLKRGKRMDEAEELLKDVTSRGLLLDHVNYTSLMDGFFKAGKESAALNMV 541

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            E  +++      +YN++++   + GK +EA   +  +I+ G  PN  TY +MI+     
Sbjct: 542 EEMTEKSIPFDVVTYNVLINGLLEHGK-YEAKSVYSGMIEMGLAPNQATYNIMIKAYCKQ 600

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM- 279
           G+LD+ALE+++ +   +I  +S     LV G       ++A ++LNEM   G  P   + 
Sbjct: 601 GELDNALELWNEMKSHKIMPSSITCNTLVVGLSEAGEIEKAMNVLNEMSVMGIHPNLVIH 660

Query: 280 RVALERMQEMGFIQGANEFLR--EMLPDKRIK 309
           RV L    + G    AN  L+  E L D  +K
Sbjct: 661 RVLLNASSKSG---KANAVLQMHEQLVDMGLK 689



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 61/117 (52%), Gaps = 12/117 (10%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y+ ++S Y K G   E++  + +++ +G +P + TY V+I     +GK+D A E+ + +
Sbjct: 799 TYDTLISGYGKIGNKKESIRLYCEMVAQGFVPKTSTYNVLISDFAKVGKMDQARELLNEM 858

Query: 234 PLMRIKRTSKQYLILVEGFVGVERF------------DEAKSLLNEMRDDGKFPGRA 278
            +  +  +S  Y IL+ G+  + +              +AK+L+ EM D G  P ++
Sbjct: 859 QVRGVPPSSSTYDILICGWCNLSKHPDLDRTLKKIYRTDAKNLITEMNDKGFVPCKS 915



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 93/214 (43%), Gaps = 6/214 (2%)

Query: 67  LDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHEL 121
           + P +V H     A   +  A++ L + E L  +     NQ   + L  V  + +   + 
Sbjct: 653 IHPNLVIHRVLLNASSKSGKANAVLQMHEQL-VDMGLKINQEAYNNLIVVFCRLRMTKKA 711

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
            +++  +    F+  +V +  L++ Y  S  ++  L+T+ +        +  +YN+++  
Sbjct: 712 TSVLKYMIRDGFVADTVTYNALIRGYCESSHVKKALATYTQMLNEGVSPNIVTYNLLLGG 771

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
               G   E  E F ++ + G  P++ TY  +I     +G    ++ ++  +        
Sbjct: 772 LLGAGLMAERDELFDKMKENGLNPDASTYDTLISGYGKIGNKKESIRLYCEMVAQGFVPK 831

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +  Y +L+  F  V + D+A+ LLNEM+  G  P
Sbjct: 832 TSTYNVLISDFAKVGKMDQARELLNEMQVRGVPP 865



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 96/236 (40%), Gaps = 29/236 (12%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   DV     ++    + G + L   L+ ++R +G+     +   +I+ +    + D A
Sbjct: 142 GTCKDVIGFNTLIDGYCKAGEMSLALDLVERMRKEGLLSDIVSYNTLINGFCKRGEYDKA 201

Query: 461 LKAFHD--------DRTLCGPISKFKL---------MLLYSSLLRTLTKCKRDFDAINVL 503
               H+        D        + K          ++ Y++++ T  K     +A  + 
Sbjct: 202 KSLLHEISESRGVKDSVFFNIDDRIKKDDNLNLEADLITYTTIISTYCKQHGLEEARALY 261

Query: 504 EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK- 562
           EEMI +G +PDV T+S ++      G     Q+L   +++ GV+P+   +  LI +  K 
Sbjct: 262 EEMIINGFLPDVVTYSSIVNGLCKDGRLSEAQELLREMKKMGVDPNHVAYTTLIDSLFKA 321

Query: 563 ------YLSNSNLMPDAATKEL-----LKKSLWKEGRRKEAAAVEERCEKINDVPS 607
                 +   S L+    T +L     L   L+K  + KEA  +     K+N +P+
Sbjct: 322 GSAWEAFACQSQLVVRGMTLDLVMCTTLVDGLFKSSKPKEAEDMFRALSKLNLIPN 377



 Score = 43.1 bits (100), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 48/229 (20%), Positives = 101/229 (44%), Gaps = 25/229 (10%)

Query: 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465
           VYA+  ++    + G  E+   L  +++  G+++      ++++     K+ D A +   
Sbjct: 450 VYAI--LIDGYCKAGKQEIATDLYNEMKLSGLKVNNVLFDVLVNNLKRGKRMDEAEELLK 507

Query: 466 DDRTLCGPISKFKLML---LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
           D       ++   L+L    Y+SL+    K  ++  A+N++EEM    I  DV T++ L+
Sbjct: 508 D-------VTSRGLLLDHVNYTSLMDGFFKAGKESAALNMVEEMTEKSIPFDVVTYNVLI 560

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLM 570
                 G  +  + ++S + + G+ P+   + ++I+AYCK             + +  +M
Sbjct: 561 NGLLEHGKYE-AKSVYSGMIEMGLAPNQATYNIMIKAYCKQGELDNALELWNEMKSHKIM 619

Query: 571 PDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAVSS 619
           P + T   L   L + G  ++A  V      +   P+L +   +   SS
Sbjct: 620 PSSITCNTLVVGLSEAGEIEKAMNVLNEMSVMGIHPNLVIHRVLLNASS 668



 Score = 42.7 bits (99), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 69/137 (50%), Gaps = 17/137 (12%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ YSS++   TK     +AINV+++M+   I+P+   ++ L+  +   G ++I   L++
Sbjct: 413 VITYSSIINGYTKKGILDEAINVMKKMLDQNIIPNAYVYAILIDGYCKAGKQEIATDLYN 472

Query: 540 MVRQNGVEPDAYMFKVLI------------QAYCKYLSNSNLMPDAATKELLKKSLWKEG 587
            ++ +G++ +  +F VL+            +   K +++  L+ D      L    +K G
Sbjct: 473 EMKLSGLKVNNVLFDVLVNNLKRGKRMDEAEELLKDVTSRGLLLDHVNYTSLMDGFFKAG 532

Query: 588 RRKEAAA---VEERCEK 601
             KE+AA   VEE  EK
Sbjct: 533 --KESAALNMVEEMTEK 547



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 99/527 (18%), Positives = 196/527 (37%), Gaps = 36/527 (6%)

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
           N N   +  T   + +   K     E + L  ++  + FL   V + +++      G L 
Sbjct: 231 NLNLEADLITYTTIISTYCKQHGLEEARALYEEMIINGFLPDVVTYSSIVNGLCKDGRLS 290

Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
                  E ++     +  +Y  ++    K G  +EA     Q++  G   +    T ++
Sbjct: 291 EAQELLREMKKMGVDPNHVAYTTLIDSLFKAGSAWEAFACQSQLVVRGMTLDLVMCTTLV 350

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
           + L    K   A ++F AL  + +   S  Y  L++G+  V   +  +SLL EM +    
Sbjct: 351 DGLFKSSKPKEAEDMFRALSKLNLIPNSITYTALIDGYCKVGDMERVESLLQEMEEKHIN 410

Query: 275 PGRAMRVA-LERMQEMGFIQGANEFLREMLPDKRIKNVRYYE---DG---SDDDEDENDD 327
           P      + +    + G +  A   +++ML    I N   Y    DG   +   E   D 
Sbjct: 411 PNVITYSSIINGYTKKGILDEAINVMKKMLDQNIIPNAYVYAILIDGYCKAGKQEIATDL 470

Query: 328 NN----SGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHF 383
            N    SG+++   V     ++       +DE    +  + +    +        +   F
Sbjct: 471 YNEMKLSGLKVN-NVLFDVLVNNLKRGKRMDEAEELLKDVTSRGLLLDHVNYTSLMDGFF 529

Query: 384 KS-PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFS 442
           K+  E+A         +     DV     ++  L  HG  E    + + +   G+    +
Sbjct: 530 KAGKESAALNMVEEMTEKSIPFDVVTYNVLINGLLEHGKYE-AKSVYSGMIEMGLAPNQA 588

Query: 443 TIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM---LLYSSLLRTLTKCKRDFDA 499
           T  ++I  Y    + D AL+ +++ ++        K+M   +  ++L+  L++      A
Sbjct: 589 TYNIMIKAYCKQGELDNALELWNEMKS-------HKIMPSSITCNTLVVGLSEAGEIEKA 641

Query: 500 INVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
           +NVL EM   GI P++     L+   +  G    V ++   +   G++ +   +  LI  
Sbjct: 642 MNVLNEMSVMGIHPNLVIHRVLLNASSKSGKANAVLQMHEQLVDMGLKINQEAYNNLIVV 701

Query: 560 YC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAA 594
           +C            KY+     + D  T   L +   +    K+A A
Sbjct: 702 FCRLRMTKKATSVLKYMIRDGFVADTVTYNALIRGYCESSHVKKALA 748



 Score = 40.0 bits (92), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 39/79 (49%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y +L+    K     ++I +  EM+  G VP   T++ L+  FA  G     ++L + ++
Sbjct: 800 YDTLISGYGKIGNKKESIRLYCEMVAQGFVPKTSTYNVLISDFAKVGKMDQARELLNEMQ 859

Query: 543 QNGVEPDAYMFKVLIQAYC 561
             GV P +  + +LI  +C
Sbjct: 860 VRGVPPSSSTYDILICGWC 878


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 107/444 (24%), Positives = 184/444 (41%), Gaps = 40/444 (9%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           + +L+  Y    DL+     +NE   +    +  +Y  ++       +  EA++ F ++ 
Sbjct: 256 YTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMK 315

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           D+   P  RTYTV+I+ L    +   AL +   +    IK     Y +L++      +F+
Sbjct: 316 DDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFE 375

Query: 260 EAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGS 318
           +A+ LL +M + G  P      AL     + G I+ A + +  M   K   N R Y    
Sbjct: 376 KARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTY---- 431

Query: 319 DDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLD--------------EWSPEVVSLL 364
             +E       S V  A GV L   L+ K L + +               + +  ++SL+
Sbjct: 432 --NELIKGYCKSNVHKAMGV-LNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLM 488

Query: 365 ADAKFV---WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGH 421
            D   V   WT   +   L   K  E A   F  +  Q G   +V     ++    + G 
Sbjct: 489 NDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLE-QKGVNPNVVMYTALIDGYCKAGK 547

Query: 422 VELVDRLIAKLRSDGMRLPFS-TIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM 480
           V+    ++ K+ S    LP S T   +I  +G+   AD  LK   +   L   + K  L 
Sbjct: 548 VDEAHLMLEKMLSKNC-LPNSLTFNALI--HGLC--ADGKLK---EATLLEEKMVKIGLQ 599

Query: 481 LLYSS---LLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
              S+   L+  L K   DFD A +  ++M+ SG  PD  T++  +  +  +G     + 
Sbjct: 600 PTVSTDTILIHRLLK-DGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAED 658

Query: 537 LFSMVRQNGVEPDAYMFKVLIQAY 560
           + + +R+NGV PD + +  LI+ Y
Sbjct: 659 MMAKMRENGVSPDLFTYSSLIKGY 682



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 100/432 (23%), Positives = 169/432 (39%), Gaps = 45/432 (10%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN +++ Y K G   EA +   ++++ G  P+  TYT +I        LDSA +VF+ +
Sbjct: 220 TYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEM 279

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFI 292
           PL   +R    Y  L+ G     R DEA  L  +M+DD  FP  R   V ++ +      
Sbjct: 280 PLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERK 339

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDP-----K 347
             A   ++EM       N+  Y    D    +     +  R   G  L+  L P      
Sbjct: 340 SEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKA--RELLGQMLEKGLMPNVITYN 397

Query: 348 ALAN-----TLDEWSPEVVSLLADAKFVWTTRLVCKVLRHF-KSPETAWHFFCWVAYQPG 401
           AL N      + E + +VV L+   K    TR   ++++ + KS             +  
Sbjct: 398 ALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERK 457

Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL 461
              DV     ++    R G+ +   RL++ +   G+     T   +ID    SK+ + A 
Sbjct: 458 VLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEAC 517

Query: 462 KAFH------------------DDRTLCGPISKFKLM-------------LLYSSLLRTL 490
             F                   D     G + +  LM             L +++L+  L
Sbjct: 518 DLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGL 577

Query: 491 TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA 550
               +  +A  + E+M+  G+ P V T + L++     GD       F  +  +G +PDA
Sbjct: 578 CADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDA 637

Query: 551 YMFKVLIQAYCK 562
           + +   IQ YC+
Sbjct: 638 HTYTTFIQTYCR 649



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 112/594 (18%), Positives = 222/594 (37%), Gaps = 70/594 (11%)

Query: 40  AQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKS 94
             LI  + +A R + +  L   + D    P + T+     +L  +     AL++++ ++ 
Sbjct: 292 THLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEE 351

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
                 N  T   L   L    +  + + L+G +     +   + +  L+  Y   G +E
Sbjct: 352 T-GIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIE 410

Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
             +        R    +T +YN ++  Y K+  + +A+    ++++   +P+  TY  +I
Sbjct: 411 DAVDVVELMESRKLSPNTRTYNELIKGYCKSNVH-KAMGVLNKMLERKVLPDVVTYNSLI 469

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
           +     G  DSA  + S +    +      Y  +++     +R +EA  L + +   G  
Sbjct: 470 DGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVN 529

Query: 275 PGRAMRVAL-ERMQEMGFIQGANEFLREM-----LPDKRIKNVRYYEDGSDDDEDENDDN 328
           P   M  AL +   + G +  A+  L +M     LP+    N   +   +D    E    
Sbjct: 530 PNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKE---- 585

Query: 329 NSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPET 388
                +     +K  L P    +T+      +  LL D  F                 + 
Sbjct: 586 ---ATLLEEKMVKIGLQPTVSTDTI-----LIHRLLKDGDF-----------------DH 620

Query: 389 AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII 448
           A+  F       G   D +     +    R G +   + ++AK+R +G+     T   +I
Sbjct: 621 AYSRF-QQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLI 679

Query: 449 DFYGISKKADAALKAFHDDR-TLCGPISKFKLMLLYSSLLRTLTKCK------------R 495
             YG   + + A       R T C P     L L+   L     K K             
Sbjct: 680 KGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMM 739

Query: 496 DFDA-INVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS-MVRQNGVEPDAYMF 553
           +FD  + +LE+M+   + P+ +++  L+      G+ ++ +K+F  M R  G+ P   +F
Sbjct: 740 EFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVF 799

Query: 554 KVLIQAYCKYLSNSNL------------MPDAATKELLKKSLWKEGRRKEAAAV 595
             L+   CK   ++              +P   + ++L   L+K+G ++   +V
Sbjct: 800 NALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSV 853



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 112/558 (20%), Positives = 212/558 (37%), Gaps = 91/558 (16%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL 143
           +AL+    +  NP + H+  +  +L T+L  +         +G +   + L        +
Sbjct: 105 TALNFSHWISQNPRYKHSVYSYASLLTLLINN-------GYVGVVFKIRLL--------M 149

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKL-----LSTESYNIVMSVYAKTGKNFEAVETFRQV 198
           ++   + GD   VL    +  +  +      L    YN +++  A+ G   E  + + ++
Sbjct: 150 IKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEM 209

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
           +++   PN  TY  M+     LG ++ A +  S +    +      Y  L+ G+   +  
Sbjct: 210 LEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDL 269

Query: 259 DEAKSLLNEMRDDGKFPGRAMRVALERMQEMGF-----IQGANEFLREMLPDKRIKNVRY 313
           D A  + NEM   G    R   VA   +   G      I  A +   +M  D+    VR 
Sbjct: 270 DSAFKVFNEMPLKG---CRRNEVAYTHLIH-GLCVARRIDEAMDLFVKMKDDECFPTVRT 325

Query: 314 YE------DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADA 367
           Y        GS+             R +  + L   ++   +   +  ++  + SL +  
Sbjct: 326 YTVLIKSLCGSE-------------RKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQC 372

Query: 368 KFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDR 427
           KF     L+ ++L                  + G   +V     ++    + G +E    
Sbjct: 373 KFEKARELLGQML------------------EKGLMPNVITYNALINGYCKRGMIEDAVD 414

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISK--KADAALKAFHDDRTLCGPISKFKLMLLYSS 485
           ++  + S  +     T   +I  Y  S   KA   L    + + L   ++       Y+S
Sbjct: 415 VVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVT-------YNS 467

Query: 486 LLRTLTKCKR-DFD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           L+    +C+  +FD A  +L  M   G+VPD  T++ ++         +    LF  + Q
Sbjct: 468 LIDG--QCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQ 525

Query: 544 NGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKE 591
            GV P+  M+  LI  YCK             + + N +P++ T   L   L  +G+ KE
Sbjct: 526 KGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKE 585

Query: 592 AAAVEERCEKINDVPSLA 609
           A  +EE+  KI   P+++
Sbjct: 586 ATLLEEKMVKIGLQPTVS 603



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 89/185 (48%), Gaps = 30/185 (16%)

Query: 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR 445
           P+TA +F  W++  P Y H VY+   +LT+L  +G+V +V +                IR
Sbjct: 103 PKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFK----------------IR 146

Query: 446 LIIDFYGISKKADAALKAFHDDRTLCGPIS-------KFKLML-LYSSLLRTLTKCKRDF 497
           L+     + K  D+   A +    LC  ++       K+KL++  Y++LL +L +     
Sbjct: 147 LL-----MIKSCDSVGDALY-VLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVD 200

Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           +   V  EM+   + P++ T++ ++  +   G+ +   +  S + + G++PD + +  LI
Sbjct: 201 EMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLI 260

Query: 558 QAYCK 562
             YC+
Sbjct: 261 MGYCQ 265


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 103/463 (22%), Positives = 176/463 (38%), Gaps = 109/463 (23%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YN +++ Y   G+  +A    R V D    P++ TY  +I  L   G+  +AL V   + 
Sbjct: 137 YNAMVAGYCGAGQ-LDAAR--RLVADMPVEPDAYTYNTLIRGLCGRGRTSNALAVLEDMF 193

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQ 293
                     Y IL+E       + +A  LL+EM D G  P      V L  + + G ++
Sbjct: 194 RRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVE 253

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKP------WLDPK 347
            A EFL         KN+  Y  G + +            ++Y + LK       W D +
Sbjct: 254 DAMEFL---------KNLPSY--GCEPNT-----------VSYNIVLKGLFTAERWEDAE 291

Query: 348 ALANTLDE--WSPEVVSLLADAKFVWTTRLV---CKVLRHFK----SPETA-----WHFF 393
            L   +      P VV+      F+    LV    +VL        +P +       H F
Sbjct: 292 KLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAF 351

Query: 394 C------------WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPF 441
           C             +    G   D+ +   +LT L R+G V++   L+ +L+  G     
Sbjct: 352 CKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKG----- 406

Query: 442 STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAIN 501
                                        C P+     ++ Y++++  LTK  +  +A+ 
Sbjct: 407 -----------------------------CSPV-----LISYNTVIDGLTKAGKTKEALE 432

Query: 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           +L+EM   G+ PD+ T+S +      +   +   + F  V+  G+ P A ++  ++   C
Sbjct: 433 LLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLC 492

Query: 562 K------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           K            Y+ +S  MP+ +T  +L + L  EG  KEA
Sbjct: 493 KRRETHNAIDLFAYMISSGCMPNESTYTILVEGLAYEGLVKEA 535



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 75/165 (45%), Gaps = 1/165 (0%)

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
            +  L++     G     L+   +  +R  L    +Y I++    K     +A++   ++
Sbjct: 168 TYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEM 227

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
            D+G  P+  TY V++  +   G+++ A+E    LP    +  +  Y I+++G    ER+
Sbjct: 228 HDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERW 287

Query: 259 DEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREM 302
           ++A+ L+ EM   G  P      + +  +   G ++ A E L +M
Sbjct: 288 EDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQM 332



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/233 (19%), Positives = 98/233 (42%), Gaps = 4/233 (1%)

Query: 89  MEALKSNPNFSHNQSTL--HALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQW 146
           ME L+  P +    ++L  + L     K ++ H+    +  + S       V++  L+  
Sbjct: 326 MEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTA 385

Query: 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206
              +G++++ +   ++ + +       SYN V+    K GK  EA+E   ++  +G  P+
Sbjct: 386 LCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPD 445

Query: 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
             TY+ +   L    +++ A+  F  +  M I+ T+  Y  ++ G         A  L  
Sbjct: 446 IITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFA 505

Query: 267 EMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGS 318
            M   G  P  +   + +E +   G ++ A E   ++   + + N +  + GS
Sbjct: 506 YMISSGCMPNESTYTILVEGLAYEGLVKEARELFAQLC-SRGVVNKKLMKKGS 557



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 47/105 (44%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           +T SYNIV+       +  +A +   ++  +G  PN  T+ ++I  L   G ++ A+EV 
Sbjct: 270 NTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVL 329

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             +P       S  Y  L+  F   ++  +A   +  M   G +P
Sbjct: 330 EQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYP 374


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 99/453 (21%), Positives = 173/453 (38%), Gaps = 41/453 (9%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           SV +  L+    + G LE  +    E  Q+    +  +Y I +      G + EAVE   
Sbjct: 272 SVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLG 331

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           ++   G +PN +T+T +I  L   GK + A+ ++  +    +  T+  Y  L+       
Sbjct: 332 KMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEG 391

Query: 257 RFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
           RF+ A ++   M   G  P  +     ++    MG IQ A     +ML      NV  Y 
Sbjct: 392 RFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYN 451

Query: 316 DGSDDDEDENDDNNSG--VRIAYGVQLKPWLDPKALANTLDEWS-PEVVSLLA-DAKFVW 371
                   + + NN+   + I  G  LKP           D W+  E++S  +   K   
Sbjct: 452 TLIYGYCKQGNLNNAMRLLEIMKGNGLKP-----------DAWTYTELISGFSRGGKLEH 500

Query: 372 TTRLVCKVLRHFKSP------------------ETAWHFFCWVAYQPGYTHDVYALEKML 413
            T L   ++ H  SP                  + A   F W   + G          M+
Sbjct: 501 ATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALF-WKMVESGNLPSSQTYNVMI 559

Query: 414 TILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGP 473
           +  ++   +   +    K+   G+     T    ID    + +   A K FH+       
Sbjct: 560 SGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKR--- 616

Query: 474 ISKFKLMLLYSSLLRTLTKCKRDFDA--INVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
            + F  +  YSSL+  L +  R  DA   N+L  +   G  P+V T++ L+     +G  
Sbjct: 617 -NYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRC 675

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYL 564
               +L   +++ G++P   +++ L+   CK L
Sbjct: 676 YEADQLVVSMQKKGLQPSEEIYRALLIGECKNL 708



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 94/485 (19%), Positives = 174/485 (35%), Gaps = 76/485 (15%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++N ++++  K G+  EA      +    A PN+ TYT +I        LD A  +F  +
Sbjct: 204 TFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRM 263

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFI 292
                   S  Y  L+ G     R +EA  +L EM   G  P      + L  + + G  
Sbjct: 264 VKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCS 323

Query: 293 QGANEFLREMLPDKRIKNVRYYE---DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKAL 349
             A E L +M     + N++ +     G   D            IA G+  K   D   L
Sbjct: 324 SEAVELLGKMKKRGCVPNIQTFTALISGLSRD--------GKFEIAIGLYHKMLAD--GL 373

Query: 350 ANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWH-----FFCWVA------- 397
             T   ++  +  L  + +F     +   +L H   P T  +      FC +        
Sbjct: 374 VPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMV 433

Query: 398 -----YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID--- 449
                 + G + +V     ++    + G++    RL+  ++ +G++    T   +I    
Sbjct: 434 IFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFS 493

Query: 450 -----------FYGISKKA--------DAALKAFHDDRTLCGPISKFKLML--------- 481
                      FYG+ +           A +  + +   +   ++ F  M+         
Sbjct: 494 RGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQ 553

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
            Y+ ++   +K     +A N   +M+  G++P+V T++  +      G   +  K+F  +
Sbjct: 554 TYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEM 613

Query: 542 RQNGVEPDAYMFKVLIQAYCK--------------YLSNSNLMPDAATKELLKKSLWKEG 587
            +    P+ Y +  LI   C+               L++    P+  T   L K L  EG
Sbjct: 614 EKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEG 673

Query: 588 RRKEA 592
           R  EA
Sbjct: 674 RCYEA 678



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 88/212 (41%), Gaps = 1/212 (0%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T +AL   L    R     T+   + S   L  +  +  +++ +   GD++  +  +++ 
Sbjct: 379 TYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKM 438

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
            +     +  +YN ++  Y K G    A+     +   G  P++ TYT +I      GKL
Sbjct: 439 LKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKL 498

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVA 282
           + A  +F  +    I      Y  +++G+  + + D+A +L  +M + G  P  +   V 
Sbjct: 499 EHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVM 558

Query: 283 LERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
           +    +   I  A  F  +M+    + NV  Y
Sbjct: 559 ISGFSKTNSISEAENFCGKMVKQGLLPNVITY 590



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 75/183 (40%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T  AL + L++  +      L   + +   +  +V +  L+      G  E   + +
Sbjct: 341 NIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIF 400

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
                   L ST++YN ++  +   G   +A+  F +++  G+ PN  TY  +I      
Sbjct: 401 KWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQ 460

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR 280
           G L++A+ +   +    +K  +  Y  L+ GF    + + A SL   M + G  P     
Sbjct: 461 GNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTY 520

Query: 281 VAL 283
            A+
Sbjct: 521 TAI 523



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 80/209 (38%), Gaps = 16/209 (7%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           Q G    VY     L  L   G       L+ K++  G      T   +I       K +
Sbjct: 300 QKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFE 359

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
            A+  +H  + L   +      + Y++L+  L    R   A  + + M+  G +P  QT+
Sbjct: 360 IAIGLYH--KMLADGL--VPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTY 415

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSN 566
           + ++  F L GD +    +F  + + G  P+   +  LI  YCK             +  
Sbjct: 416 NEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKG 475

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEAAAV 595
           + L PDA T   L     + G+ + A ++
Sbjct: 476 NGLKPDAWTYTELISGFSRGGKLEHATSL 504


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 93/484 (19%), Positives = 189/484 (39%), Gaps = 67/484 (13%)

Query: 144 MQWYSTSGDL-ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           +Q    +GDL E V       R  A   +  SYN+V++   + G+  +AVE F ++ +  
Sbjct: 171 VQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERA 230

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +PN  TY  MI+  +  G L++   +   +    +K  +  Y +L+ G     R  E  
Sbjct: 231 VLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETS 290

Query: 263 SLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDE 322
           +LL+EM                               ++M+PD    ++ +      D  
Sbjct: 291 ALLDEMAS-----------------------------QKMVPDGFTYSILF------DGL 315

Query: 323 DENDDNNS-----GVRIAYGVQLKPWLDPKALANTLDEW----SPEVVSLLADAKFVWTT 373
             N D+ +     G  +  GV +  +     L     +     + EV+  L +A  V  T
Sbjct: 316 SRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLV-PT 374

Query: 374 RLVCKVL--RHFKSPETAWHFFCWVAYQPGYTH-DVYALEKMLTILARHGHVELVDRLIA 430
           R++   L   + ++ E    F  +   +  +   D      ++  L +   +     L+ 
Sbjct: 375 RVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLM 434

Query: 431 KLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLL-YSSLLRT 489
           +++ +G+     T   +ID YG + + +       + +      +  K  ++ Y S++  
Sbjct: 435 EMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQE-----NGLKPNVVSYGSIVNA 489

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
             K  +  +A+ +L++M    ++P+ Q ++ ++  +   G       L   ++ NG+ P 
Sbjct: 490 FCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPS 549

Query: 550 AYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
              + +LI+  C              LSN  L+PDA +   L  +    G   +A  +++
Sbjct: 550 IVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQ 609

Query: 598 RCEK 601
           R  K
Sbjct: 610 RMHK 613



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 80/175 (45%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T + L + L ++ R  E   L+ +++S K +     +  L    S +GD + +LS +
Sbjct: 269 NAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLF 328

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            +Y +    +   + +I+++   K GK   A E  + +++ G +P    Y  +I      
Sbjct: 329 GKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQT 388

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           G+L+ A   F  +    IK     Y  L+ G    ER   A+ LL EM+D+G  P
Sbjct: 389 GELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNP 443



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 58  LSSLLNDRLLDPFIVTHALRSA----PNADSALSIMEALKSNPNFSHNQSTLHALATVLA 113
           L SL+N  L+   ++ + L +        + A S    +KS  +   +  T +AL   L 
Sbjct: 363 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSR-HIKPDHITYNALINGLC 421

Query: 114 KSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE 173
           K++R    + L+ ++  +        F  L+  Y  +G LE      +E ++     +  
Sbjct: 422 KAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVV 481

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SY  +++ + K GK  EAV     +  +  +PN++ Y  +I+  V  G  D A  +   +
Sbjct: 482 SYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKM 541

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               I  +   Y +L++G     +  EA+ ++N + +    P
Sbjct: 542 KSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIP 583



 Score = 46.6 bits (109), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 1/134 (0%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           S  +YN+++       +  EA E    + +   IP++ +Y  +I      G +D AL++ 
Sbjct: 549 SIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQ 608

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR-VALERMQEM 289
             +    IK T + Y  L+ G  G  R +E + L  +M  +   P  A+  + +E   + 
Sbjct: 609 QRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKY 668

Query: 290 GFIQGANEFLREML 303
           G    A +  +EML
Sbjct: 669 GNEIKAEDLRKEML 682


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 1/233 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D+A  +   + +      N  T +AL   L K  R    + +I +     F    V +  
Sbjct: 63  DAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNT 122

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           LM      G ++  L+T+ +  +   + +  S+N +++   +  +  +A+E F ++ID  
Sbjct: 123 LMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRD 182

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             PN  TY+V+I+ L    +LD A ++   +     +     Y  LV GF    R D A 
Sbjct: 183 FHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSAL 242

Query: 263 SLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
            LL  M   G  P      V ++++ ++G +  A+E  RE++ +K   NV  Y
Sbjct: 243 GLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTY 295



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/232 (20%), Positives = 99/232 (42%), Gaps = 6/232 (2%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNP 96
           L+D +    R +++ ++ +    R   P +VT+     AL      D AL+    + +  
Sbjct: 88  LVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQM-TEE 146

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
            +     + +A+ T L +++R  +   +  ++    F    V +  ++     S  L+  
Sbjct: 147 GYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEA 206

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
               +            +Y  ++  ++  G+   A+   R+++ +G IP+  TYTV+I+ 
Sbjct: 207 QQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDK 266

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           L  +G++D A E+F  L   +       Y  L+ G+    R DE   ++ EM
Sbjct: 267 LCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREM 318



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 89/219 (40%), Gaps = 5/219 (2%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+T   R+   AD AL +   +    +F  N  T   +   L KS +  E + L+  + S
Sbjct: 158 IITGLCRARRLAD-ALEVFNEMIDR-DFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVS 215

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                  V +  L+  +S +G L+  L        +  +    +Y +V+    K G+  +
Sbjct: 216 EGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDD 275

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A E FR+++     PN  TY+ +I       ++D   +V      M  +     Y  ++ 
Sbjct: 276 AHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMRE---MACRPNVVTYNTMIW 332

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEM 289
           G   V+R +EA  +  EM + G  P       L+R   M
Sbjct: 333 GLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKRALRM 371


>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 892

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 94/432 (21%), Positives = 170/432 (39%), Gaps = 26/432 (6%)

Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           L+   +N V+    + G   EA E F+++ + G +P+  +Y+++I+     G++D A EV
Sbjct: 278 LNNHCFNAVIYGLCQGGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEV 337

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQE 288
           F  +    I      Y IL++GF    R D+A  +  EM++ G  P   +  + ++    
Sbjct: 338 FKEMRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCR 397

Query: 289 MGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKA 348
            G +  A +F  EM  +    +   Y              N+        +L  W D  A
Sbjct: 398 KGDMDSAIKFWEEMTSNNFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMWPDTIA 457

Query: 349 LANTLDEWS--PEVVSLLA-DAKFVWT---------TRLVCKVLRHFKSPETAWHFFCWV 396
             + L  +   P+    LA   KF               + ++ R    PE A      V
Sbjct: 458 CNHILSIYCRKPDFNKALALSEKFQENGVHFNPYSYNEFIHRICRG-SVPEKALQLL-PV 515

Query: 397 AYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK 456
             +     DV     +++  A+  + E    L  K+   G+     T  ++I+ +    K
Sbjct: 516 MLKRNVLPDVVNYSTLISCFAKRLNSEKAVMLFIKMTKVGITFNVKTYTILINLFISDCK 575

Query: 457 ADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
            D A + F   +        +   + Y+SL+           A  + +EM   G  P+V 
Sbjct: 576 MDVAYRLFKGMKE----SRVYPDQIAYTSLVAGFCNTGEMTRARALFDEMSREGCSPNVV 631

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATK 576
           T++  +  +          KL+  +++ GV PD  ++ +LI A+C    N+  M  A   
Sbjct: 632 TYTCFINEYLKLNKNNQAHKLYEKMKERGVYPDQILYTMLIAAFC----NTGEMNRA--- 684

Query: 577 ELLKKSLWKEGR 588
           E L   + +EGR
Sbjct: 685 EALFDEMKQEGR 696



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 60/126 (47%)

Query: 150 SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRT 209
            G L+     + E +    L    SY+I++  + + G+  +A E F+++ + G +PN  +
Sbjct: 293 GGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYS 352

Query: 210 YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
           Y+++I+     G++D ALEVF  +    I      Y IL++GF      D A     EM 
Sbjct: 353 YSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMT 412

Query: 270 DDGKFP 275
            +   P
Sbjct: 413 SNNFSP 418



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 12/122 (9%)

Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           +A  V +EM  SGI+PDV ++S L+  F  +G      ++F  +R +G+ P+ Y + +LI
Sbjct: 298 EASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYSILI 357

Query: 558 QAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDV 605
             +CK             + NS ++PD  +  +L     ++G    A    E     N  
Sbjct: 358 DGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSNNFS 417

Query: 606 PS 607
           PS
Sbjct: 418 PS 419



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/175 (20%), Positives = 81/175 (46%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N    +A+   L +     E   +  ++ +S  L    ++  L+  +   G ++     +
Sbjct: 279 NNHCFNAVIYGLCQGGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVF 338

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            E R    L +  SY+I++  + K G+  +A+E F ++ + G +P+  +Y+++I+     
Sbjct: 339 KEMRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRK 398

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           G +DSA++ +  +       ++  Y  L++G+   ++F  A      M+  G +P
Sbjct: 399 GDMDSAIKFWEEMTSNNFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMWP 453



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%)

Query: 165 QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
           +R  L    +Y+ ++S +AK   + +AV  F ++   G   N +TYT++I   ++  K+D
Sbjct: 518 KRNVLPDVVNYSTLISCFAKRLNSEKAVMLFIKMTKVGITFNVKTYTILINLFISDCKMD 577

Query: 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            A  +F  +   R+      Y  LV GF        A++L +EM  +G  P
Sbjct: 578 VAYRLFKGMKESRVYPDQIAYTSLVAGFCNTGEMTRARALFDEMSREGCSP 628



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/136 (20%), Positives = 65/136 (47%), Gaps = 1/136 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + + +L+  +  +G++    + ++E  +     +  +Y   ++ Y K  KN +A + + +
Sbjct: 596 IAYTSLVAGFCNTGEMTRARALFDEMSREGCSPNVVTYTCFINEYLKLNKNNQAHKLYEK 655

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL-MRIKRTSKQYLILVEGFVGVE 256
           + + G  P+   YT++I    N G+++ A  +F  +    R       Y  L+  ++ + 
Sbjct: 656 MKERGVYPDQILYTMLIAAFCNTGEMNRAEALFDEMKQEGRCTPNVVMYTCLINSYIKLN 715

Query: 257 RFDEAKSLLNEMRDDG 272
           + D+A+ L  EMR  G
Sbjct: 716 KRDQAEKLYEEMRAKG 731



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 95/234 (40%), Gaps = 20/234 (8%)

Query: 398 YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA 457
           Y  G T +V      +  L + G   +  RLI  L      L       +I  YG+ +  
Sbjct: 237 YMSGETPNVVTYGTYIKGLCKVGLFGVAWRLIQNLCRKNQPLNNHCFNAVI--YGLCQGG 294

Query: 458 --DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
             D A + F + +   G +     +  YS L+    +  R   A  V +EM  SGI+P++
Sbjct: 295 ILDEASEVFKEMKN-SGILPD---VYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNI 350

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------ 563
            ++S L+  F  +G      ++F  ++ +G+ PD Y + +LI  +C+             
Sbjct: 351 YSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEE 410

Query: 564 LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAV 617
           ++++N  P A     L K  +K  +   A       +K+   P      HI ++
Sbjct: 411 MTSNNFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMWPDTIACNHILSI 464


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 104/482 (21%), Positives = 195/482 (40%), Gaps = 41/482 (8%)

Query: 85  ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
           A+++M  LK  P FS     + ALA    + +R  EL   + ++     +++   F  L+
Sbjct: 166 AVAVMRRLKFRPAFSAYTVLIGALAEA-RRPERALELLRQMQEVGYEVGVHL---FTTLV 221

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204
           +  +  G +   L+  +E +          YN+ +  + K G    A + F ++  +G  
Sbjct: 222 RALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLK 281

Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL 264
           P+  +YT MI  L   G+L  A E+F+ +   R    +  Y  ++ G+    RF++A  L
Sbjct: 282 PDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKL 341

Query: 265 LNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRI-KNVRYYEDGSDDDED 323
           L  +R+ G  P                +   N  L  +   +++ + +  +E    D E 
Sbjct: 342 LERLRERGCIPS---------------VVSFNSILTCLGKKRKVDEALSLFEVMKKDAEP 386

Query: 324 ENDDNNSGV-RIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRH 382
            +   N  +  +  G +++           LDE   E  SL  +   + T  ++   L  
Sbjct: 387 NSSTYNIIIDMLCLGGRVEEAY------RILDEM--EHASLFPN---LLTVNIMVDRLCK 435

Query: 383 FKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL-PF 441
            +  E A+  F   A Q G   D      ++  L + G V+   RL  K+   G    P 
Sbjct: 436 ARKLEEAYKIF-ESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPV 494

Query: 442 STIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAI 500
               LI +F+   +K D   K F +  R  C P      + L ++ +  + K        
Sbjct: 495 VYTSLIRNFFIHGRKEDGH-KIFKELIRRGCKPD-----LTLLNTYMDCVFKAGEVEKGR 548

Query: 501 NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
            + E++   G +PDV+++S L++     G  +    +F  ++Q G   DA  +  ++  +
Sbjct: 549 MIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGF 608

Query: 561 CK 562
           CK
Sbjct: 609 CK 610



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 71/154 (46%)

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
           + +  DI S  FL    ++  L+   + +G      + ++  +Q+   L   +YN V+  
Sbjct: 548 RMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDG 607

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
           + K+GK  +A E   ++ ++   P   TY  +++ L  + +LD A  +F       I+  
Sbjct: 608 FCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELN 667

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              Y  L++GF  V R DEA  +L EM   G  P
Sbjct: 668 VVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTP 701



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 103/542 (19%), Positives = 198/542 (36%), Gaps = 51/542 (9%)

Query: 29  FTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNAD 83
           FT  +    R  Q+ D++ L      S           L+P IV +         A N D
Sbjct: 217 FTTLVRALAREGQVADALALVDEVKGS----------CLEPDIVLYNVCIDCFGKAGNVD 266

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL 143
            A      LK+      +  +  ++  VL K+ R  E + L   + + + +  +  +  +
Sbjct: 267 MAWKFFHELKAQ-GLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTM 325

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
           +  Y ++G  E         R+R  + S  S+N +++   K  K  EA+  F +V+ + A
Sbjct: 326 IMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLF-EVMKKDA 384

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
            PNS TY ++I+ L   G+++ A  +   +    +        I+V+      + +EA  
Sbjct: 385 EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYK 444

Query: 264 LLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDD-- 320
           +       G  P      +L + + + G +  A     +ML      N   Y     +  
Sbjct: 445 IFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFF 504

Query: 321 DEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVL 380
                +D +   +       KP L    L NT        +  +  A  V   R++ + +
Sbjct: 505 IHGRKEDGHKIFKELIRRGCKPDL---TLLNTY-------MDCVFKAGEVEKGRMIFEDI 554

Query: 381 RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP 440
           R +                 G+  DV +   ++  L + G       +   ++  G  L 
Sbjct: 555 RSY-----------------GFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALD 597

Query: 441 FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAI 500
                 ++D +  S K   A +   + +  C   +    +  Y +++  L K  R  +A 
Sbjct: 598 ARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPT----VATYGAIVDGLAKIDRLDEAY 653

Query: 501 NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
            + EE    GI  +V  +S L+  F   G       +   + + G+ P+ Y +  L+ A 
Sbjct: 654 MLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDAL 713

Query: 561 CK 562
            K
Sbjct: 714 VK 715



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/205 (19%), Positives = 90/205 (43%), Gaps = 1/205 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+ H L  A  A    +I  A+K    F+ +    +A+     KS + H+   ++ ++  
Sbjct: 568 ILIHGLTKAGQARETSNIFHAMKQQ-GFALDARAYNAVVDGFCKSGKVHKAYEILEEMKE 626

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                    +  ++   +    L+     + E + +   L+   Y+ ++  + K G+  E
Sbjct: 627 KCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDE 686

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A     +++ +G  PN  T+  +++ LV   +++ AL  F ++  M+    +  Y IL+ 
Sbjct: 687 AYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILIN 746

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP 275
           G   V+++++A     +M+  G  P
Sbjct: 747 GLCRVQKYNKAFVFWQDMQKQGLVP 771



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 99/493 (20%), Positives = 191/493 (38%), Gaps = 48/493 (9%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDIS-SSKFLNV-SVNF 140
           D ALS+ E +K +     N ST + +  +L    R  E   ++ ++  +S F N+ +VN 
Sbjct: 371 DEALSLFEVMKKDAE--PNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNI 428

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
           M  +     +  LE     +    QR       +Y  ++    K G+  EA   F +++D
Sbjct: 429 M--VDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLD 486

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV----E 256
            G   N   YT +I +    G+ +   ++F  L    I+R  K  L L+  ++       
Sbjct: 487 AGHNANPVVYTSLIRNFFIHGRKEDGHKIFKEL----IRRGCKPDLTLLNTYMDCVFKAG 542

Query: 257 RFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
             ++ + +  ++R  G  P  R+  + +  + + G  +  +     M       + R Y 
Sbjct: 543 EVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYN 602

Query: 316 DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL 375
              D         +  V  AY +              L+E   + V        V T   
Sbjct: 603 AVVD-----GFCKSGKVHKAYEI--------------LEEMKEKCVQ-----PTVATYGA 638

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           +   L      + A+  F   A   G   +V     ++    + G ++    ++ ++   
Sbjct: 639 IVDGLAKIDRLDEAYMLF-EEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKK 697

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR 495
           G+     T   ++D    +++ + AL  F   + +  P + +     YS L+  L + ++
Sbjct: 698 GLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYT----YSILINGLCRVQK 753

Query: 496 DFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV 555
              A    ++M   G+VP+V T++ ++   A  G+      LF   + NG  PDA  F  
Sbjct: 754 YNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNA 813

Query: 556 LIQAYCKYLSNSN 568
           LI+     +SN+N
Sbjct: 814 LIEG----MSNAN 822



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 52/244 (21%), Positives = 102/244 (41%), Gaps = 41/244 (16%)

Query: 356 WSPEVVSLLADA-KFVWTTRLVCKVLRHFKSPETAWHFF-----------------CWVA 397
           W+P++   ++       T  +V  VLR  ++P  A  FF                  + A
Sbjct: 57  WTPDLARAVSSTFSASPTADVVISVLRSIRNPSLAAPFFLLASSSSASAPHPLPADAYHA 116

Query: 398 YQPGYTHDVYALEKMLTILARHGH-------VELVDRLI------------AKLRSDGMR 438
             P   HD+ ALEK+L  +A  G+         L   L+            A +R    R
Sbjct: 117 VLPFLHHDLAALEKVLEEMAVLGYGLPNQACAHLAAALVRARRLDDAVLAVAVMRRLKFR 176

Query: 439 LPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD 498
             FS   ++I     +++ + AL+     + +   +     + L+++L+R L +  +  D
Sbjct: 177 PAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVG----VHLFTTLVRALAREGQVAD 232

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A+ +++E+  S + PD+  ++  +  F   G+  +  K F  ++  G++PD   +  +I 
Sbjct: 233 ALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIW 292

Query: 559 AYCK 562
             CK
Sbjct: 293 VLCK 296


>gi|255586501|ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526155|gb|EEF28491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 701

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 111/587 (18%), Positives = 222/587 (37%), Gaps = 79/587 (13%)

Query: 22  RSFVRAPFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPN 81
           +++ +   +NK     +  Q I   +  VRS ++          LL+ F+    L     
Sbjct: 88  KAYAKNKMSNKALDTFQNMQDIFGCKPGVRSYNT----------LLNAFV---ELNEWDR 134

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           A+S     E++  +PN      T + L  +  K Q+  +  +L+  + S        ++ 
Sbjct: 135 AESFSRYFESMDVSPNLQ----TYNILIKISCKKQQIEKAISLLDWMWSQNLKPDVFSYG 190

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            L+      GDL   L  ++E   R  +     YN+++  + K G   +  E + +++ +
Sbjct: 191 TLINGMVKVGDLLGALKVFDEMSVRGVVADVTCYNMLIDGFFKHGDYDKGKEIWERLVKD 250

Query: 202 GAI-PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
            ++ PN  TY +MI  L   G+ D +LE++  +     ++    Y  L+ G       D 
Sbjct: 251 CSVYPNVVTYNIMINGLCKCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDG 310

Query: 261 AKSLLNEMRDDGKFPGRAMRVA-LERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSD 319
           A  +  E+ +           A L      G I+ + E    M  +              
Sbjct: 311 AVRVYKEIVESSLVVDAVTHNAMLNGFCRAGKIKESFELWMVMGKE-------------- 356

Query: 320 DDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWS--------PEVVSLLADAKFVW 371
                    N    ++Y + +K   +   +   +  W         PE  +       + 
Sbjct: 357 ---------NCQTVVSYNILIKGLFENGKVEEAISIWELLCKKGCRPESTTYGVLIHGLC 407

Query: 372 TTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAK 431
               + K L+ FK  E            PG   D YA   M+  L + G ++    ++ +
Sbjct: 408 KNGRLNKALKIFKEAEDG----------PGKL-DAYAYSSMVDGLCKEGRMDEAISIVNQ 456

Query: 432 LRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTL 490
           +   G +L       +I+ +  + K + A+  F + +   C P      ++ Y++L++ L
Sbjct: 457 MDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREMECKGCSPT-----IVSYNTLIKGL 511

Query: 491 TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA 550
            K +R  +A + ++EM+     PD+ T S LM     +   ++   L+      G +PD 
Sbjct: 512 CKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEKKIEMALNLWQQALDKGFKPDI 571

Query: 551 YMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWK 585
            M+ +L+   C             ++  S  +P+  T+  L + L+K
Sbjct: 572 TMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNLVTRNTLMEGLYK 618



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 44/244 (18%), Positives = 96/244 (39%), Gaps = 12/244 (4%)

Query: 40  AQLIDSIRLAVRSNSSNSLSSLLNDR--LLDPFIVT---HALRSAPNADSALSI---MEA 91
           + ++D +    R + + S+ + ++ R   LDP +     +    A   + A++    ME 
Sbjct: 435 SSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREMEC 494

Query: 92  LKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG 151
              +P       + + L   L K++R  E  + + ++   ++    +    LM       
Sbjct: 495 KGCSPTIV----SYNTLIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEK 550

Query: 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT 211
            +E+ L+ W +   +        YNI+M       K  +A++ +  +     +PN  T  
Sbjct: 551 KIEMALNLWQQALDKGFKPDITMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNLVTRN 610

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
            ++E L  +   + A E++  +    +      Y I ++G     R  +A   LN+  + 
Sbjct: 611 TLMEGLYKVRDYEKASEIWDCILKDGLHPDIISYNITIKGLCSCSRISDAIEFLNDALNR 670

Query: 272 GKFP 275
           G  P
Sbjct: 671 GILP 674


>gi|297814374|ref|XP_002875070.1| hypothetical protein ARALYDRAFT_322482 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297320908|gb|EFH51329.1| hypothetical protein ARALYDRAFT_322482 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 582

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 118/269 (43%), Gaps = 14/269 (5%)

Query: 68  DPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD 127
           D  ++   L++ P    A            F H+  T   +  +  ++ R   + ++   
Sbjct: 92  DSHVINRVLKAHPPMQKAWLFFNWASQIKGFKHDHFTYTTMLDIFGEAGRIQSMYSVFHL 151

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           +     L  +V + +L+ W S+SGD++  +  W E R      +  SY   M +    G+
Sbjct: 152 MKEKGVLIDTVTYTSLIHWVSSSGDVDGAMRLWEEMRDDGCEPTVVSYTAYMKILFADGR 211

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
             EA E ++ ++     PN  TYTV++E+LV  GK + AL++F  +  + ++       I
Sbjct: 212 VEEATEVYKDMLRSRVSPNCHTYTVLMEYLVGTGKCEEALDIFFKMQEIGVQPDKPACNI 271

Query: 248 LVEGFVGVERFDEAK---SLLNEMRDDG---KFPGRAMRVALERMQEMGFIQGANEFLRE 301
           L+   V   +F E      +L  M+++G   ++P     + LE  + +     +++ LR+
Sbjct: 272 LI---VKACKFGETSFMARILVYMKENGVVLRYP-----IFLEASETLKAAGESDDLLRQ 323

Query: 302 MLPDKRIKNVRYYEDGSDDDEDENDDNNS 330
           +      +++   +D  +    E DD NS
Sbjct: 324 VNSHISAESLLCSKDIDETPTTEVDDTNS 352



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 92/198 (46%), Gaps = 6/198 (3%)

Query: 371 WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIA 430
           W + ++ +VL+     + AW FF W +   G+ HD +    ML I    G ++ +  +  
Sbjct: 91  WDSHVINRVLKAHPPMQKAWLFFNWASQIKGFKHDHFTYTTMLDIFGEAGRIQSMYSVFH 150

Query: 431 KLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR-TLCGPISKFKLMLLYSSLLRT 489
            ++  G+ +   T   +I +   S   D A++ + + R   C P      ++ Y++ ++ 
Sbjct: 151 LMKEKGVLIDTVTYTSLIHWVSSSGDVDGAMRLWEEMRDDGCEPT-----VVSYTAYMKI 205

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
           L    R  +A  V ++M+ S + P+  T++ LM +    G  +    +F  +++ GV+PD
Sbjct: 206 LFADGRVEEATEVYKDMLRSRVSPNCHTYTVLMEYLVGTGKCEEALDIFFKMQEIGVQPD 265

Query: 550 AYMFKVLIQAYCKYLSNS 567
                +LI   CK+   S
Sbjct: 266 KPACNILIVKACKFGETS 283


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 152/363 (41%), Gaps = 40/363 (11%)

Query: 206 NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL 265
           N+ TY  +I  L  +G L+ A ++FS + +M IK   + Y  L+EG+  V+  ++A  LL
Sbjct: 371 NTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELL 430

Query: 266 NEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDE 324
            E++ +       M  A+   +   G +  ANE  +EM+      N+  Y         E
Sbjct: 431 IEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKE 490

Query: 325 NDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLV--CKVLRH 382
                   R    +++   +  + L       SP+V        F + T ++  CK    
Sbjct: 491 G-------RFEEAIKILGVMKDQGL-------SPDV--------FCYNTVIIGFCKA--- 525

Query: 383 FKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFS 442
            K  E   +    +A   G   +VY     +    R G ++  +R   ++   G+     
Sbjct: 526 GKMEEGKSYLVEMIA--KGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDV 583

Query: 443 TIRLIIDFY---GISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDA 499
               +ID Y   G + KA A  +   D   L  P  +      +S L+  L+K  +  +A
Sbjct: 584 ICTDLIDGYCKDGNTTKAFAKFRCMLDQGVL--PDVQ-----THSVLIHGLSKNGKLQEA 636

Query: 500 INVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
           + V  E++  G+VPDV T++ L+ +   +GD K   +L   + + G+ P+   +  LI  
Sbjct: 637 MGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALING 696

Query: 560 YCK 562
            CK
Sbjct: 697 LCK 699



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 10/147 (6%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y  +++ Y + GK  E       + ++G IPN  TY+V+I  L   G +D ALE+  ++
Sbjct: 234 TYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSM 293

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
               +   +  Y  L++GF   +R  E KS+L+EM   G  P      AL      GF++
Sbjct: 294 ANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALIN----GFVK 349

Query: 294 -----GANEFLREMLPDK-RIKNVRYY 314
                GA +   EM   K ++    YY
Sbjct: 350 QSDIGGAFQVKEEMFARKIKLNTFTYY 376



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 87/426 (20%), Positives = 164/426 (38%), Gaps = 40/426 (9%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+      GDLE     ++E          ++YN ++  Y K     +A E   ++  E 
Sbjct: 378 LIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKEN 437

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
              N+     ++  L + G L  A E+F  +    +K     Y  +V+G V   RF+EA 
Sbjct: 438 LTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAI 497

Query: 263 SLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDD 321
            +L  M+D G  P        +    + G ++    +L EM+      NV          
Sbjct: 498 KILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVY--------- 548

Query: 322 EDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLR 381
                         YG  +  +     +      +   + S +A    V  T L+    +
Sbjct: 549 -------------TYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPND-VICTDLIDGYCK 594

Query: 382 HFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP- 440
              + +    F C +    G   DV     ++  L+++G ++    + ++L   G+ +P 
Sbjct: 595 DGNTTKAFAKFRCML--DQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGL-VPD 651

Query: 441 -FSTIRLIIDFYGISKKADAALKA---FHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
            F+   LI +   + K+ D  LKA    HDD    G       ++ Y++L+  L K    
Sbjct: 652 VFTYTSLISN---LCKEGD--LKAAFELHDDMCKKGINPN---IVTYNALINGLCKLGEI 703

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
             A  + + +   G+  +  T+S ++  +    +     +LF  ++  GV PD++++  L
Sbjct: 704 AKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCAL 763

Query: 557 IQAYCK 562
           I   CK
Sbjct: 764 IDGCCK 769



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  L+     +G+ E  LS +    +   + ST ++N ++  + K GK  EA +    ++
Sbjct: 760 YCALIDGCCKAGNTEKALSLFLGMVEEG-IASTPAFNALIDGFFKLGKLIEAYQLVEDMV 818

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           D    PN  TYT++IE+   +G +  A ++F  +    +      Y  L+ G+  + R  
Sbjct: 819 DNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRS 878

Query: 260 EAKSLLNEMRDDGKFP 275
           E  SL +EM   G  P
Sbjct: 879 EMFSLFDEMVARGIKP 894



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 59/128 (46%), Gaps = 12/128 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +  Y++++    K  +  +  + L EMI  G+ P+V T+   ++ +   G+ +  ++ F 
Sbjct: 512 VFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFI 571

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEG 587
            +  +G+ P+  +   LI  YCK             + +  ++PD  T  +L   L K G
Sbjct: 572 EMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNG 631

Query: 588 RRKEAAAV 595
           + +EA  V
Sbjct: 632 KLQEAMGV 639



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/131 (22%), Positives = 62/131 (47%)

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
           +L+  Y   G+     + +     +  L   +++++++   +K GK  EA+  F +++D+
Sbjct: 587 DLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDK 646

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G +P+  TYT +I +L   G L +A E+   +    I      Y  L+ G   +    +A
Sbjct: 647 GLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKA 706

Query: 262 KSLLNEMRDDG 272
           + L + + + G
Sbjct: 707 RELFDGIPEKG 717



 Score = 46.2 bits (108), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 75/166 (45%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           + +L+      GDL+      ++  ++    +  +YN +++   K G+  +A E F  + 
Sbjct: 655 YTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIP 714

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           ++G   NS TY+ +I        L  A ++F  + L+ +   S  Y  L++G       +
Sbjct: 715 EKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTE 774

Query: 260 EAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPD 305
           +A SL   M ++G     A    ++   ++G +  A + + +M+ +
Sbjct: 775 KALSLFLGMVEEGIASTPAFNALIDGFFKLGKLIEAYQLVEDMVDN 820



 Score = 45.8 bits (107), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 14/126 (11%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY-HFALQGDEKIVQKLFSMV 541
           Y +L+  L K      A ++  EM   GI PD+QT++ L+  ++ +Q  EK  + L  + 
Sbjct: 375 YYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIK 434

Query: 542 RQNGVEPDAYMFKVLIQA--YCKYLSNSN----------LMPDAATKELLKKSLWKEGRR 589
           ++N +  +AYM   ++    +C  L+ +N          L P+      + K L KEGR 
Sbjct: 435 KEN-LTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRF 493

Query: 590 KEAAAV 595
           +EA  +
Sbjct: 494 EEAIKI 499



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 40/199 (20%), Positives = 84/199 (42%), Gaps = 12/199 (6%)

Query: 79  APNADSALSIM-----EALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKF 133
           A N + ALS+      E + S P F       +AL     K  +  E   L+ D+  +  
Sbjct: 770 AGNTEKALSLFLGMVEEGIASTPAF-------NALIDGFFKLGKLIEAYQLVEDMVDNHI 822

Query: 134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE 193
               V +  L++++ T G+++     + E ++R  + +  +Y  ++  Y + G+  E   
Sbjct: 823 TPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFS 882

Query: 194 TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
            F +++  G  P+   ++VM++  +  G    AL++   +    +      Y IL++   
Sbjct: 883 LFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDALC 942

Query: 254 GVERFDEAKSLLNEMRDDG 272
                 E   +L+E+   G
Sbjct: 943 KHNNLSEVLKVLDEVEKQG 961



 Score = 42.0 bits (97), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 70/181 (38%), Gaps = 5/181 (2%)

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
           NPN      T +AL   L K     + + L   I        SV +  ++  Y  S +L 
Sbjct: 684 NPNIV----TYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLT 739

Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
                ++  +       +  Y  ++    K G   +A+  F  +++EG I ++  +  +I
Sbjct: 740 EAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEG-IASTPAFNALI 798

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
           +    LGKL  A ++   +    I      Y IL+E    V    EA+ L  EM+     
Sbjct: 799 DGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVM 858

Query: 275 P 275
           P
Sbjct: 859 P 859


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/453 (18%), Positives = 178/453 (39%), Gaps = 66/453 (14%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SYN+V++   + G+  +AVE F ++ +   +PN  TY  MI+  +  G L++   +   +
Sbjct: 65  SYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQM 124

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
               +K  +  Y +L+ G     R  E  +LL+EM                         
Sbjct: 125 VCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMAS----------------------- 161

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNS-----GVRIAYGVQLKPWLDPKA 348
                 ++M+PD    ++ +      D    N D+ +     G  +  GV +  +     
Sbjct: 162 ------QKMVPDGFTYSILF------DGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSIL 209

Query: 349 LANTLDEW----SPEVVSLLADAKFVWTTRLVCKVL--RHFKSPETAWHFFCWVAYQPGY 402
           L     +     + EV+  L +A  V  TR++   L   + ++ E    F  +   +  +
Sbjct: 210 LNGLCKDGKVSIAEEVLQSLVNAGLV-PTRVIYNTLINGYCQTGELEGAFSTFGQMKSRH 268

Query: 403 TH-DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL 461
              D      ++  L +   +     L+ +++ +G+     T   +ID YG + + +   
Sbjct: 269 IKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCF 328

Query: 462 KAFHDDRTLCGPISKFKLMLL-YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
               + +      +  K  ++ Y S++    K  +  +A+ +L++M    ++P+ Q ++ 
Sbjct: 329 IVLSEMQE-----NGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNA 383

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSN 568
           ++  +   G       L   ++ NG+ P    + +LI+  C              LSN  
Sbjct: 384 IIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHR 443

Query: 569 LMPDAATKELLKKSLWKEGRRKEAAAVEERCEK 601
           L+PDA +   L  +    G   +A  +++R  K
Sbjct: 444 LIPDAVSYNTLISACCYRGNIDKALDLQQRMHK 476



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 80/175 (45%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T + L + L ++ R  E   L+ +++S K +     +  L    S +GD + +LS +
Sbjct: 132 NAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLF 191

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            +Y +    +   + +I+++   K GK   A E  + +++ G +P    Y  +I      
Sbjct: 192 GKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQT 251

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           G+L+ A   F  +    IK     Y  L+ G    ER   A+ LL EM+D+G  P
Sbjct: 252 GELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNP 306



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 58  LSSLLNDRLLDPFIVTHALRSA----PNADSALSIMEALKSNPNFSHNQSTLHALATVLA 113
           L SL+N  L+   ++ + L +        + A S    +KS  +   +  T +AL   L 
Sbjct: 226 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSR-HIKPDHITYNALINGLC 284

Query: 114 KSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE 173
           K++R    + L+ ++  +        F  L+  Y  +G LE      +E ++     +  
Sbjct: 285 KAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVV 344

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SY  +++ + K GK  EAV     +  +  +PN++ Y  +I+  V  G  D A  +   +
Sbjct: 345 SYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKM 404

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               I  +   Y +L++G     +  EA+ ++N + +    P
Sbjct: 405 KSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIP 446



 Score = 45.8 bits (107), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 1/134 (0%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           S  +YN+++       +  EA E    + +   IP++ +Y  +I      G +D AL++ 
Sbjct: 412 SIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQ 471

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR-VALERMQEM 289
             +    IK T + Y  L+ G  G  R +E + L  +M  +   P  A+  + +E   + 
Sbjct: 472 QRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKY 531

Query: 290 GFIQGANEFLREML 303
           G    A +  +EML
Sbjct: 532 GNEIKAEDLRKEML 545


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/453 (18%), Positives = 178/453 (39%), Gaps = 66/453 (14%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SYN+V++   + G+  +AVE F ++ +   +PN  TY  MI+  +  G L++   +   +
Sbjct: 17  SYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQM 76

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
               +K  +  Y +L+ G     R  E  +LL+EM                         
Sbjct: 77  VCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMAS----------------------- 113

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNS-----GVRIAYGVQLKPWLDPKA 348
                 ++M+PD    ++ +      D    N D+ +     G  +  GV +  +     
Sbjct: 114 ------QKMVPDGFTYSILF------DGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSIL 161

Query: 349 LANTLDEW----SPEVVSLLADAKFVWTTRLVCKVL--RHFKSPETAWHFFCWVAYQPGY 402
           L     +     + EV+  L +A  V  TR++   L   + ++ E    F  +   +  +
Sbjct: 162 LNGLCKDGKVSIAEEVLQSLVNAGLV-PTRVIYNTLINGYCQTGELEGAFSTFGQMKSRH 220

Query: 403 TH-DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL 461
              D      ++  L +   +     L+ +++ +G+     T   +ID YG + + +   
Sbjct: 221 IKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCF 280

Query: 462 KAFHDDRTLCGPISKFKLMLL-YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
               + +      +  K  ++ Y S++    K  +  +A+ +L++M    ++P+ Q ++ 
Sbjct: 281 IVLSEMQE-----NGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNA 335

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSN 568
           ++  +   G       L   ++ NG+ P    + +LI+  C              LSN  
Sbjct: 336 IIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHR 395

Query: 569 LMPDAATKELLKKSLWKEGRRKEAAAVEERCEK 601
           L+PDA +   L  +    G   +A  +++R  K
Sbjct: 396 LIPDAVSYNTLISACCYRGNIDKALDLQQRMHK 428



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 80/175 (45%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T + L + L ++ R  E   L+ +++S K +     +  L    S +GD + +LS +
Sbjct: 84  NAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLF 143

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            +Y +    +   + +I+++   K GK   A E  + +++ G +P    Y  +I      
Sbjct: 144 GKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQT 203

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           G+L+ A   F  +    IK     Y  L+ G    ER   A+ LL EM+D+G  P
Sbjct: 204 GELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNP 258



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 58  LSSLLNDRLLDPFIVTHALRSA----PNADSALSIMEALKSNPNFSHNQSTLHALATVLA 113
           L SL+N  L+   ++ + L +        + A S    +KS  +   +  T +AL   L 
Sbjct: 178 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSR-HIKPDHITYNALINGLC 236

Query: 114 KSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE 173
           K++R    + L+ ++  +        F  L+  Y  +G LE      +E ++     +  
Sbjct: 237 KAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVV 296

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SY  +++ + K GK  EAV     +  +  +PN++ Y  +I+  V  G  D A  +   +
Sbjct: 297 SYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKM 356

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               I  +   Y +L++G     +  EA+ ++N + +    P
Sbjct: 357 KSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIP 398



 Score = 45.8 bits (107), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 1/134 (0%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           S  +YN+++       +  EA E    + +   IP++ +Y  +I      G +D AL++ 
Sbjct: 364 SIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQ 423

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR-VALERMQEM 289
             +    IK T + Y  L+ G  G  R +E + L  +M  +   P  A+  + +E   + 
Sbjct: 424 QRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKY 483

Query: 290 GFIQGANEFLREML 303
           G    A +  +EML
Sbjct: 484 GNEIKAEDLRKEML 497


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 168/423 (39%), Gaps = 87/423 (20%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++N VM  +A++    +A E ++ +++ G  P++ +Y ++I  L  +GKLD +L++ S +
Sbjct: 47  AFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEM 106

Query: 234 PLMRIKRTSKQ-YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGF 291
            +MR +  S Q Y  LV       R D A SL +EM   G  P R M   L   + + G 
Sbjct: 107 -VMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGK 165

Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALAN 351
           ++ A+E  ++M       NV  Y                   + +G+     L+    AN
Sbjct: 166 VKDASERFKQMPKHGCQPNVPVYN-----------------VLLHGLCSSGQLEQ---AN 205

Query: 352 TL------DEWSPEVVS--LLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYT 403
           TL         SP+VV+   L DA        VCK  R     E     F       GY 
Sbjct: 206 TLFAEMKSHSCSPDVVTYNTLLDA--------VCKARR----VEEGCKLF-EAMRAAGYV 252

Query: 404 HDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKA 463
            +V     ++  L R G +E    +   +   G                           
Sbjct: 253 PNVITFSTLIHGLCRTGELEKALEVFGSMLEAG--------------------------- 285

Query: 464 FHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
                  C P +K+     Y++L+  L + ++   A  + E+M  + I PD   ++ L+ 
Sbjct: 286 -------CKP-NKYT----YTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIA 333

Query: 524 HFALQGDEKIVQKLF-SMVRQNGVEPDAYMFKVLIQAYCKY--LSNSN-LMPDAATKELL 579
            +  +G     +KL+  M    G++P    F  LI  +CK   L  +N L+ +  TK L 
Sbjct: 334 GYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLA 393

Query: 580 KKS 582
             S
Sbjct: 394 ADS 396



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 57/126 (45%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+    +SG LE   + + E +  +      +YN ++    K  +  E  + F  +   G
Sbjct: 191 LLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAG 250

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +PN  T++ +I  L   G+L+ ALEVF ++     K     Y  L+ G    E+  +A+
Sbjct: 251 YVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQAR 310

Query: 263 SLLNEM 268
            L  +M
Sbjct: 311 ELFEKM 316



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 105/256 (41%), Gaps = 21/256 (8%)

Query: 367 AKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVD 426
           A  V+T   + K L     PE ++          G   DV+A   ++   AR  ++E   
Sbjct: 7   AANVFTYSSIIKSLVKEAKPEESYKVL-EEMMAAGCNPDVFAFNGVMQGFARSNNMEKAR 65

Query: 427 RLIAKLRSDGMRLPFSTIRLIIDFYGISK--KADAALKAFHDDRTLCGPISKFKLMLLYS 484
            +   +   G +    +  ++I  +G++K  K D +LK    +  + G       M  YS
Sbjct: 66  EVYQHMVESGYKPDNVSYHILI--HGLAKIGKLDESLKIL-SEMVMRGQTPS---MQAYS 119

Query: 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544
           SL+R L K +R   A ++ +EMI  G  PD   F  L+      G  K   + F  + ++
Sbjct: 120 SLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKH 179

Query: 545 GVEPDAYMFKVLIQAYCK--YLSNSNLM----------PDAATKELLKKSLWKEGRRKEA 592
           G +P+  ++ VL+   C    L  +N +          PD  T   L  ++ K  R +E 
Sbjct: 180 GCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEG 239

Query: 593 AAVEERCEKINDVPSL 608
             + E       VP++
Sbjct: 240 CKLFEAMRAAGYVPNV 255



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 54/265 (20%), Positives = 108/265 (40%), Gaps = 8/265 (3%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVT-----HALRSAPNADSALSIMEALKSNP 96
           L+D++  A R      L   +      P ++T     H L      + AL +  ++    
Sbjct: 226 LLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSM-LEA 284

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
               N+ T   L + L ++++  + + L   ++ +     +V + +L+  Y   G ++  
Sbjct: 285 GCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEA 344

Query: 157 LSTWNEYRQRAKLLST-ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
              + E    A L  T  ++N ++  + K GK   A E   ++  +G   +S TY ++I 
Sbjct: 345 EKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIA 404

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            L    KLD ALEV+  +   +        +  V G       D+A ++    R  G  P
Sbjct: 405 GLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVP 464

Query: 276 G-RAMRVALERMQEMGFIQGANEFL 299
                R+  E + ++G ++ A + +
Sbjct: 465 NPETFRILSESLIKLGRVEDAQKLM 489



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 83/211 (39%), Gaps = 6/211 (2%)

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
             PN       LH L +     Q N    TL  ++ S       V +  L+     +  +
Sbjct: 181 CQPNVPVYNVLLHGLCSSGQLEQAN----TLFAEMKSHSCSPDVVTYNTLLDAVCKARRV 236

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           E     +   R    + +  +++ ++    +TG+  +A+E F  +++ G  PN  TYT +
Sbjct: 237 EEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTL 296

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           I  L    K+  A E+F  +    I   +  Y  L+ G+      DEA+ L  EM     
Sbjct: 297 ISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAG 356

Query: 274 FPGR--AMRVALERMQEMGFIQGANEFLREM 302
                      ++   ++G +  ANE + EM
Sbjct: 357 LQPTIVTFNTLIDGFCKLGKLGRANELVAEM 387



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 12/125 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y++LL  + K +R  +   + E M  +G VP+V TFS L++     G+ +   ++F 
Sbjct: 220 VVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFG 279

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEG 587
            + + G +P+ Y +  LI   C+             ++ + + PDA     L     K G
Sbjct: 280 SMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRG 339

Query: 588 RRKEA 592
              EA
Sbjct: 340 SMDEA 344


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 103/534 (19%), Positives = 198/534 (37%), Gaps = 89/534 (16%)

Query: 138  VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
            V +  L+     +G ++     + E        +  +YN ++    K  K  +A E    
Sbjct: 581  VTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEI 640

Query: 198  VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
            +  +   P+S TYT +I  L N  +L+ A  V   +           Y  L+        
Sbjct: 641  MRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNN 700

Query: 258  FDEAKSLLNEMR--DDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
             +  + LL EM   ++G++     R+    ++    +      +  +    R+ +     
Sbjct: 701  LELVEQLLKEMEATEEGQWNANGARLHRFVIRGDVLMMAMAVPMAALTSQTRVLD----- 755

Query: 316  DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVW---- 371
              S D + +        R+             A+A T   +  ++V +L +++F W    
Sbjct: 756  --SKDQQGQFSPRPHQYRVT------------AVA-TQGGFHHKIVRIL-NSRFAWEYAE 799

Query: 372  ----------TTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKML-------- 413
                      TT +V KVL+  ++ + A  FF W   Q GY HD Y    +L        
Sbjct: 800  TALERFTGKLTTTVVGKVLQGVRNGDAALGFFDWATSQEGYNHDTYTCNCLLQALLRLKR 859

Query: 414  ---------------------TIL----ARHGHVELVDRLIAKLRSDGMRLPFSTIRLII 448
                                 TIL     R G +     L+ ++   G+        ++I
Sbjct: 860  PKDALQVYRNKLCCSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVI 919

Query: 449  DFYGISKKADAALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
                 ++K D+AL+ F +  +   C P      +  YS+++ +L K  +  DA  ++E+M
Sbjct: 920  KGLCSARKLDSALELFKEMEESGSCPPD-----VFTYSTIVDSLVKSGKVDDACRLVEDM 974

Query: 507  IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY--- 563
            +  G  P+V T+S L++     G       L   + ++G  P+   +  +I  +CK    
Sbjct: 975  VSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRI 1034

Query: 564  ---------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
                     + +    P+  T  +L  +  K G+ ++A  + E   +   VP+L
Sbjct: 1035 DEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNL 1088



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 106/236 (44%), Gaps = 8/236 (3%)

Query: 71  IVTHALRSA---PNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD 127
           I+ HAL  A   P A+S L +M   +  P+      T +++   L KS+R ++   L   
Sbjct: 480 ILIHALCKAKRLPEAESWLDVMVKNRCYPDVV----TYNSVVDGLCKSRRINDAFLLFDR 535

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           + ++  +   V +  ++  +    +L+         ++   +    +Y+ +++   K G 
Sbjct: 536 MRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGT 595

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
             +A + F++++  G  PN  TY  +I+ L  + K++ A E+   +        S  Y  
Sbjct: 596 VDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTC 655

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER-MQEMGFIQGANEFLREM 302
           L+ G     R +EA  +L EM+D G  P R     L R +Q+   ++   + L+EM
Sbjct: 656 LINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEM 711



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 101/501 (20%), Positives = 191/501 (38%), Gaps = 44/501 (8%)

Query: 71   IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHE-LKTLIGDIS 129
            +V   L+   N D+AL   +   S   ++H+  T + L   L + +R  + L+     + 
Sbjct: 813  VVGKVLQGVRNGDAALGFFDWATSQEGYNHDTYTCNCLLQALLRLKRPKDALQVYRNKLC 872

Query: 130  SSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF 189
             S  +     F  L+     +GD+        E  +     +   +N+V+       K  
Sbjct: 873  CSPNM---FTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLD 929

Query: 190  EAVETFRQVIDEGAI-PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
             A+E F+++ + G+  P+  TY+ +++ LV  GK+D A  +   +           Y  L
Sbjct: 930  SALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSL 989

Query: 249  VEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKR 307
            + G     + DEA +LL  M   G  P        ++   ++G I  A   L EM+    
Sbjct: 990  LHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGC 1049

Query: 308  IKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADA 367
              NV                      + Y V L  +       + +      +V ++ + 
Sbjct: 1050 QPNV----------------------VTYTVLLDAFCKCGKAEDAIG-----LVEVMVEK 1082

Query: 368  KFV---WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVEL 424
             +V   +T   +  +       E A      +  Q G   +V +   ++  L +   V  
Sbjct: 1083 GYVPNLFTYNSLLDMFCKKDEVERACQLLSSM-IQKGCVPNVVSYNTVIAGLCKATKVHE 1141

Query: 425  VDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH-DDRTLCGPISKFKLMLLY 483
               L+ ++ S+       T   IID    + + D A + F+    + C P      ++ Y
Sbjct: 1142 GVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPN-----LVTY 1196

Query: 484  SSLLRTLTKCKRDFDAINVLEEMIF-SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
            +SL+  L K +R   A  +L EM    G  PD+ T++ ++             KLF  + 
Sbjct: 1197 NSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQML 1256

Query: 543  QNGVEPDAYMFKVLIQAYCKY 563
             +G+ PD   + ++I + CK+
Sbjct: 1257 SDGLAPDDVTYSIVISSLCKW 1277



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 99/509 (19%), Positives = 200/509 (39%), Gaps = 43/509 (8%)

Query: 71   IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
            +V   L SA   DSAL + + ++ + +   +  T   +   L KS +  +   L+ D+ S
Sbjct: 917  VVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVS 976

Query: 131  SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                   V + +L+     +G L+   +      +     +  +YN ++  + K G+  E
Sbjct: 977  KGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDE 1036

Query: 191  AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
            A     +++D G  PN  TYTV+++     GK + A+ +   +           Y  L++
Sbjct: 1037 AYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLD 1096

Query: 251  GFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIK 309
             F   +  + A  LL+ M   G  P   +    +  + +   +      L +ML +  + 
Sbjct: 1097 MFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVP 1156

Query: 310  NVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDE--WSPEVVSLLADA 367
            ++  +    D            V IAY            L N + E   +P +V+     
Sbjct: 1157 DIVTFNTIID-----AMCKTYRVDIAY-----------ELFNLIQESGCTPNLVT----- 1195

Query: 368  KFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDR 427
             +      +CK  R F   E   +    +  + G + D+     ++  L +   V+   +
Sbjct: 1196 -YNSLVHGLCKS-RRFDQAE---YLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYK 1250

Query: 428  LIAKLRSDGMRLPFSTIRLIIDF---YGISKKADAALKAFHDDRTLCGPISKFKLMLLYS 484
            L  ++ SDG+     T  ++I     +    +A+  L+    +    G I+       Y 
Sbjct: 1251 LFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAIT-------YG 1303

Query: 485  SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544
            +L+    K      A+ +L+ ++  G  PDV TFS  +   + +G  +   +L   + + 
Sbjct: 1304 TLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRA 1363

Query: 545  GVEPDAYMFKVLIQAYCKYLSNSNLMPDA 573
            G+ PD   +  L++ +C    +++L  DA
Sbjct: 1364 GLVPDTVTYNTLLKGFC----DASLTEDA 1388



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 102/254 (40%), Gaps = 53/254 (20%)

Query: 345 DPKALANTLDEW----SPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQP 400
           D +AL   LDE+    SPE+V                KVL+    P  A  FF W   + 
Sbjct: 76  DEQALRVALDEYRGQLSPEIVG---------------KVLQRLIDPGAALVFFEWAETRD 120

Query: 401 GYTHDVYALEKMLTILAR-HGHVELVDRLIAKLRSD--GMRLPFSTIRLIIDFYGISK-- 455
           GY H+++    +L +L + H + +  D   +++     G  + +ST  LI  F    K  
Sbjct: 121 GYQHEIFCCNCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYST--LISGFIRAGKIL 178

Query: 456 --------------KADAA-----LKAFHDDRTLCGPISKFKLM--------LLYSSLLR 488
                         KA A      L+   D       +  F+ M        + Y++++ 
Sbjct: 179 PAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMIN 238

Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548
            L+K  R  DAI +LEEM+ +G  P+V +++ +++ F      +    L   +   G  P
Sbjct: 239 GLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPP 298

Query: 549 DAYMFKVLIQAYCK 562
           D   +  +I   CK
Sbjct: 299 DVVSYTTVINGLCK 312



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 106/592 (17%), Positives = 216/592 (36%), Gaps = 86/592 (14%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           L P IV   L+   +  +AL   E  ++   + H     + L  VL K+ +  +   L  
Sbjct: 91  LSPEIVGKVLQRLIDPGAALVFFEWAETRDGYQHEIFCCNCLLNVLVKAHQYSQAHDLFR 150

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE------------------------ 162
                ++   +V +  L+  +  +G +      ++E                        
Sbjct: 151 SRIEGQWGGDTVTYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAG 210

Query: 163 --------YRQRAKLLSTES--YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
                   +R+ +K    +S  YN +++  +K+ +  +A+    +++D G  PN  +Y  
Sbjct: 211 QCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNT 270

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           ++       ++++AL +   +           Y  ++ G   +++ DEA  ++++M   G
Sbjct: 271 VLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRG 330

Query: 273 KFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSG 331
             P       L +    +G + GA E +R+M       N   Y +        ND   + 
Sbjct: 331 CQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAH 390

Query: 332 VRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWH 391
             +   +Q      P A+      +S  +       K      L+ +++R    P     
Sbjct: 391 QVLQMMIQ--TGCPPDAI-----NYSTIISGFCKAGKLREAHDLLEQMIRRGCRP----- 438

Query: 392 FFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY 451
                        DV  L  ++  L +   ++    L+    S GM      +   I  +
Sbjct: 439 -------------DVACLSTLIDALCKAAAIDSAQELLRM--SIGMDCAPDVVAYSILIH 483

Query: 452 GISK-----KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
            + K     +A++ L     +R  C P      ++ Y+S++  L K +R  DA  + + M
Sbjct: 484 ALCKAKRLPEAESWLDVMVKNR--CYPD-----VVTYNSVVDGLCKSRRINDAFLLFDRM 536

Query: 507 IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY--- 563
             +G++PDV T+S +++ F    +     K+   +++    PD   +  LI   CK    
Sbjct: 537 RAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTV 596

Query: 564 ---------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
                    +      P+  T   L   L K  + ++AA + E   K +  P
Sbjct: 597 DKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTP 648



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 88/205 (42%), Gaps = 26/205 (12%)

Query: 401  GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
            G + +V     +L  L + G ++    L+ ++   G      T   IID +    + D A
Sbjct: 978  GCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEA 1037

Query: 461  ---LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
               L+   D    C P      ++ Y+ LL    KC +  DAI ++E M+  G VP++ T
Sbjct: 1038 YHLLEEMVDGG--CQPN-----VVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFT 1090

Query: 518  FSGLMYHFALQGD-EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK-------------Y 563
            ++ L+  F  + + E+  Q L SM+ Q G  P+   +  +I   CK              
Sbjct: 1091 YNSLLDMFCKKDEVERACQLLSSMI-QKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQM 1149

Query: 564  LSNSNLMPDAATKELLKKSLWKEGR 588
            LSN N +PD  T   +  ++ K  R
Sbjct: 1150 LSN-NCVPDIVTFNTIIDAMCKTYR 1173



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 107/254 (42%), Gaps = 19/254 (7%)

Query: 42   LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVT-----HALRSAPNADSALSIMEALKSNP 96
            +ID++    R + +  L +L+ +    P +VT     H L  +   D A  ++  +    
Sbjct: 1164 IIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQ 1223

Query: 97   NFSHNQSTLHALATVLAKSQRNHELKTL----IGDISSSKFLNVSVNFMNLMQWY---ST 149
              S +  T + +   L KS+R      L    + D  +   +  S+   +L +W      
Sbjct: 1224 GCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEA 1283

Query: 150  SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRT 209
            +  LEL+L   N +   A      +Y  ++  + KTG   +A+E  + ++ +G+ P+  T
Sbjct: 1284 NNVLELMLK--NGFDPGAI-----TYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVT 1336

Query: 210  YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
            +++ I+ L   G+L  A E+   +    +   +  Y  L++GF      ++A  L   MR
Sbjct: 1337 FSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMR 1396

Query: 270  DDGKFPGRAMRVAL 283
              G  P  A    L
Sbjct: 1397 QCGCEPDNATYTTL 1410



 Score = 43.5 bits (101), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 76/190 (40%), Gaps = 25/190 (13%)

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFKLMLLYSSL 486
           L  ++R+ G+     T  ++I  +      D+A K     +   C P      ++ YS+L
Sbjct: 532 LFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPD-----VVTYSAL 586

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           +  L K      A +V +EM+  G  P++ T++ L+         +   ++  ++R+   
Sbjct: 587 INGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSC 646

Query: 547 EPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWK-------EG 587
            PD+  +  LI   C            + + +   +PD  T   L ++L K       E 
Sbjct: 647 TPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQ 706

Query: 588 RRKEAAAVEE 597
             KE  A EE
Sbjct: 707 LLKEMEATEE 716



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 41/78 (52%)

Query: 480  MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
            ++ +S  +  L+K  R   A  +LE M+ +G+VPD  T++ L+  F      +    LF 
Sbjct: 1334 VVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFE 1393

Query: 540  MVRQNGVEPDAYMFKVLI 557
            ++RQ G EPD   +  L+
Sbjct: 1394 VMRQCGCEPDNATYTTLV 1411


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 117/561 (20%), Positives = 217/561 (38%), Gaps = 71/561 (12%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           ++ +AL  +     AL++   +K       N  T   L   L K  +  E + ++ ++S 
Sbjct: 304 VLIYALSGSGRKVEALNLFNEMKEK-GCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSE 362

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
              +   V +  L+  Y   G ++      +     +   +T +YN ++    K  K  +
Sbjct: 363 KGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHK 422

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A+    ++++    P+  TY  +I     +  L+SA  + S +    +      Y + ++
Sbjct: 423 AMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFID 482

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIK 309
                 R +EA +L + ++  G      +  AL +   ++G I  A   L  ML D  + 
Sbjct: 483 TLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLP 542

Query: 310 NVRYYEDGSDD--DEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADA 367
           N   Y    +    E +  + +S V     + +KP         T+  ++  +  +L D 
Sbjct: 543 NSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKP---------TVVTYTILIGEMLKDG 593

Query: 368 KFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDR 427
            F        KV  H  S          + YQP    DV      L      G +E VD 
Sbjct: 594 AFDHAL----KVFNHMVS----------LGYQP----DVCTYTAFLHAYFSQGMLEEVDD 635

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFY---GISKKADAALKAFHDDRTLCGPISKFKLMLLYS 484
           +IAK+  +G+     T  ++ID Y   G++ +A   LK   D  T C P      + + S
Sbjct: 636 VIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVD--TGCKPS-----LYIVS 688

Query: 485 SLLRTL--------TKCKRDFD----------AINVLEEMIFSGIVPDVQTFSGLMYHFA 526
            L++ L        T+ +   D          A+ + E+M+  G   DV  +  L+  F 
Sbjct: 689 ILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFC 748

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAA 574
            Q   +  Q L   +++ G+ P   ++  L+   CK             +  + L+P   
Sbjct: 749 QQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLE 808

Query: 575 TKELLKKSLWKEGRRKEAAAV 595
           + +LL   L+ EG  ++A AV
Sbjct: 809 SYKLLVCGLYIEGSNEKAKAV 829



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 158/393 (40%), Gaps = 40/393 (10%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SY  ++    + G+  EA++ F  + ++   P  RTYTV+I  L   G+   AL +F+ +
Sbjct: 266 SYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEM 325

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFI 292
                +     Y +L++G     + DEA+ +L+EM + G  P      AL +   + G I
Sbjct: 326 KEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMI 385

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
             A E L  M  +    N R Y +                 I    + +      AL N 
Sbjct: 386 DDAFEILDLMESNSCGPNTRTYNE----------------LICGLCKKRKVHKAMALLNK 429

Query: 353 LDE--WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
           + E   SP +++      +       CKV       E+A+     +  + G   D +   
Sbjct: 430 MLERKLSPSLIT------YNSLIHGQCKV----NDLESAYRLLSLMN-ENGLVPDQWTYS 478

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470
             +  L + G VE    L   +++ G++        +ID Y    K D A      +R L
Sbjct: 479 VFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLL--ERML 536

Query: 471 ---CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
              C P S       Y+ L+  L K K+  +A +++ +M+  G+ P V T++ L+     
Sbjct: 537 NDACLPNS-----YTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLK 591

Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
            G      K+F+ +   G +PD   +   + AY
Sbjct: 592 DGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAY 624



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 100/470 (21%), Positives = 190/470 (40%), Gaps = 46/470 (9%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V++ NL+     +G +   L  + +  +     +  +Y +++   + +G+  EA+  F +
Sbjct: 265 VSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNE 324

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + ++G  PN  TYTV+I+ L    K+D A ++ S +    +  +   Y  L++G+     
Sbjct: 325 MKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGM 384

Query: 258 FDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
            D+A  +L+ M  +   P  R     +  + +   +  A   L +ML  K   ++  Y  
Sbjct: 385 IDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNS 444

Query: 317 GSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLV 376
                   ND     +  AY  +L   ++   L    D+W+  V        F+ T   +
Sbjct: 445 LIHGQCKVND-----LESAY--RLLSLMNENGLVP--DQWTYSV--------FIDT---L 484

Query: 377 CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
           CK  R     E A   F  V  + G   +      ++    + G +++   L+ ++ +D 
Sbjct: 485 CKEGR----VEEAGTLFDSVKAK-GVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDA 539

Query: 437 MRLPFS-TIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR 495
             LP S T  ++I+     KK   A        T+    +     +L   +L+       
Sbjct: 540 C-LPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLK-----DG 593

Query: 496 DFD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK 554
            FD A+ V   M+  G  PDV T++  ++ +  QG  + V  + + + + G+ PD   + 
Sbjct: 594 AFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYT 653

Query: 555 VLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           VLI  Y             K + ++   P      +L K+L  E R KE 
Sbjct: 654 VLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKET 703



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 104/253 (41%), Gaps = 10/253 (3%)

Query: 60  SLLN---DRLLDPFIVT-----HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATV 111
           +LLN   +R L P ++T     H      + +SA  ++  +  N     +Q T       
Sbjct: 425 ALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNEN-GLVPDQWTYSVFIDT 483

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L K  R  E  TL   + +       V +  L+  Y   G +++  S        A L +
Sbjct: 484 LCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPN 543

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
           + +YN+++    K  K  EA     +++  G  P   TYT++I  ++  G  D AL+VF+
Sbjct: 544 SYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFN 603

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMG 290
            +  +  +     Y   +  +      +E   ++ +M ++G  P      V ++    +G
Sbjct: 604 HMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLG 663

Query: 291 FIQGANEFLREML 303
               A +FL+ M+
Sbjct: 664 LTHRAFDFLKCMV 676



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 18/178 (10%)

Query: 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR 445
           P+TA  FF W+A +PG+ H+V++   ML IL R           A+L     ++  S I+
Sbjct: 81  PQTALSFFNWIALRPGFKHNVHSYSSMLNILIR-----------ARLLGVAEKIRISMIK 129

Query: 446 LIIDFYGISKKADAALKAFHDDRTLCGPISKFKLML-LYSSLLRTLTKCKRDFDAINVLE 504
                  +    +   K   D         KFK  L  Y+++L +L+K     +   V  
Sbjct: 130 SCCSIEDVLFVLEVFRKMNADGEF------KFKPTLRCYNTILMSLSKFLLIDEMKTVYL 183

Query: 505 EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           E++ + I P++ TF+ ++  +   G+    +   S + Q G+ PD + +  LI  +C+
Sbjct: 184 ELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCR 241



 Score = 39.3 bits (90), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 1/142 (0%)

Query: 134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE 193
           ++VS+ +  L+  +     LE      +  ++R    S + YN ++    K G   EAV 
Sbjct: 735 IDVSI-YGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVR 793

Query: 194 TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
               +++ G +P   +Y +++  L   G  + A  VF  L           + +L++G +
Sbjct: 794 LVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLL 853

Query: 254 GVERFDEAKSLLNEMRDDGKFP 275
             +  DE   L++ M + G  P
Sbjct: 854 KRDLVDECSELIDIMEEKGCQP 875


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 107/541 (19%), Positives = 209/541 (38%), Gaps = 87/541 (16%)

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDL---ELVLSTWNEYRQRAKLLSTESYNIVMSVY 182
           G +  +K +     + N+++ +   GD+   ++VLS   E   +  L +   YN  +   
Sbjct: 231 GSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEM-EKECKPNLFT---YNAFIGGL 286

Query: 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
            +TG   EA+E  + ++++G  P+  TYT++++      +   A  +F ++P   +    
Sbjct: 287 CQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNR 346

Query: 243 KQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQGANEFLRE 301
             Y  L++GF+     +EA  + +EM   G K         +  + + G +  A     E
Sbjct: 347 FTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNE 406

Query: 302 ML-----PDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEW 356
           ML     PD    N+    DG     D          +A   +L   +  + L  +   +
Sbjct: 407 MLMAGIEPDTWTYNLLI--DGYLKSHD----------MAKACELLAEMKARKLTPSPFTY 454

Query: 357 SPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAY-----------------Q 399
           S  +  L   +       ++ +++R+   P    +     AY                  
Sbjct: 455 SVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIA 514

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
            G   D++    ++  L R   VE    L+  +   G++    T    I+ Y  S +   
Sbjct: 515 NGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQV 574

Query: 460 ALKAFHD----------------DRTLCG------PISKFKLML---------LYSSLLR 488
           A + F D                 +  C        +S FK ML          YS+++ 
Sbjct: 575 AERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIH 634

Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548
           +L+K  +  +A+ V  + + +G+VPDV  ++ L+  F  +GD +   +L+  +  NG+ P
Sbjct: 635 SLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINP 694

Query: 549 DAYMFKVLIQ--AYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAA 594
           +  ++  LI    YCK             + +  + PD     +L     KEG  ++A +
Sbjct: 695 NIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALS 754

Query: 595 V 595
           +
Sbjct: 755 L 755



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 107/485 (22%), Positives = 189/485 (38%), Gaps = 73/485 (15%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y  V+  + K G   +      ++  E   PN  TY   I  L   G +D ALEV   +
Sbjct: 244 TYTNVIKAHCKVGDVIKGKMVLSEMEKE-CKPNLFTYNAFIGGLCQTGAVDEALEVKKLM 302

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
               +      Y +LV+GF   +R  EAK +   M   G  P R    AL      GFI+
Sbjct: 303 MEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALID----GFIK 358

Query: 294 GAN--EFLR---EMLPDKRIKNVRYYED--GSDDDEDENDDNNSGVRIAYGVQLKPWLDP 346
             N  E LR   EM+      NV  Y    G      E     S     +   L   ++P
Sbjct: 359 EGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMS----LFNEMLMAGIEP 414

Query: 347 KALANTLDEWSPEVVSLLADAKFVWTTRLV--CKVLRHFKSPETAWHFFCWVAYQPGYTH 404
                  D W+    +LL D  ++ +  +   C++L   K+ +     F +     G  H
Sbjct: 415 -------DTWT---YNLLIDG-YLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCH 463

Query: 405 --DVYALEKMLTILARHG---HVELVDRLI-AKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
             D+    ++L  + R+G   +V +   LI A ++     +    ++++I        A+
Sbjct: 464 SSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMI--------AN 515

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
             L                  +  Y+ L+  L + K+  +A  +L +M   GI P+  T+
Sbjct: 516 GVLPD----------------LFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTY 559

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSN 566
              +  ++  G+ ++ ++ F  +  +G+ P+  ++ +LI+ +C            K +  
Sbjct: 560 GAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLE 619

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWA--VSSADLTR 624
             L+PD      +  SL K G+ KEA  V  +  K   VP + L   + +      D+ +
Sbjct: 620 KGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEK 679

Query: 625 VHSIY 629
              +Y
Sbjct: 680 ASQLY 684



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 113/564 (20%), Positives = 220/564 (39%), Gaps = 57/564 (10%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
            D AL + + L        +  T   L     K +R+ E K +   + SS        + 
Sbjct: 292 VDEALEV-KKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYT 350

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            L+  +   G++E  L   +E   R   L+  +YN ++   AK G+  +A+  F +++  
Sbjct: 351 ALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMA 410

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G  P++ TY ++I+  +    +  A E+ + +   ++  +   Y +L+ G        +A
Sbjct: 411 GIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKA 470

Query: 262 KSLLNEMRDDGKFPGRAMRVALER--MQEMGFIQGANEFLREM-----LPDKRIKNVRYY 314
             +L++M  +G  P   M   L +  +QE  + + A E L+ M     LPD    N    
Sbjct: 471 NEVLDQMIRNGVKPNVFMYGTLIKAYVQESRY-EMAIELLKIMIANGVLPDLFCYNCLII 529

Query: 315 EDGSDDDEDEN-----DDNNSGVRI---AYGVQLKPWLDPKALANTLDEWSPEVVSLLAD 366
                   +E      D    G++     YG  +  +     +      +   + S +  
Sbjct: 530 GLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVP 589

Query: 367 AKFVWTTRLV--CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVEL 424
              ++T  +   C V    ++  T   F C +  + G   D+ A   ++  L+++G  + 
Sbjct: 590 NNVIYTILIKGHCDVGNTVEALST---FKCML--EKGLIPDIRAYSAIIHSLSKNGKTK- 643

Query: 425 VDRLIAKLRSDGMRLPFSTIRLIIDFY-------GISKKADAALKAFHDDRTLCGPISKF 477
                    + G+ L F    ++ D +       G  K+ D    +   D  L   I+  
Sbjct: 644 --------EAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPN 695

Query: 478 KLMLLYSSLLRTLTKCKRD--FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ 535
             +++Y++L+     CK     +A  + +EMI  GI PD   +  L+     +G+ +   
Sbjct: 696 --IVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKAL 753

Query: 536 KLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSL 583
            LF   +Q  V   +  F  LI ++CK+            + +  L P+  T  +L  + 
Sbjct: 754 SLFHEAQQKSVGSLS-AFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAY 812

Query: 584 WKEGRRKEAAAVEERCEKINDVPS 607
            K    +EA  +    E  N +P+
Sbjct: 813 GKAEMMEEAEQLFLDMETRNIIPN 836



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 77/175 (44%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T   L     K++   E + L  D+ +   +  ++ + +L+  Y+  G+   ++S +
Sbjct: 801 NIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLF 860

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            +   R       +Y ++ S Y K GK+ EA++   + + EG       +  +I HL   
Sbjct: 861 KDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKE 920

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            ++ + LE+ S +    +  +SK    L+ GF      DEA  +L  M+  G  P
Sbjct: 921 KQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVP 975



 Score = 38.9 bits (89), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 98/255 (38%), Gaps = 36/255 (14%)

Query: 374 RLVCKVLRHFKSPETA--WHFFCWVAYQ---PGYTHDVYALEKMLTI-LARHGHVELVDR 427
            +VC VL+  +  ++    +FF W + +   P Y H       +L I L   G +   D 
Sbjct: 86  EIVCSVLQKSEIDDSVRLQNFFHWSSSKMSTPQYLHSY----SILAIRLCNSGLIHQADN 141

Query: 428 LIAKL---RSDGMRLPFSTIRLIIDFYGISKKA-DAALKAF-------HDDRTLCGPISK 476
           ++ KL   R   + +  S +R   +F G +    D  +  F                IS+
Sbjct: 142 MLEKLLQTRKPPLEILDSLVRCYREFGGSNLTVFDIFIDKFRVLGFLNEASSVFIASISE 201

Query: 477 --FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
             F  ++  ++L+R L K         V   M+ + IVPDV T++ ++      GD  I 
Sbjct: 202 GFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGD-VIK 260

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKS 582
            K+     +   +P+ + +   I   C            K +    L PD  T  LL   
Sbjct: 261 GKMVLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDG 320

Query: 583 LWKEGRRKEAAAVEE 597
             K+ R KEA  + E
Sbjct: 321 FCKQKRSKEAKLIFE 335


>gi|18767384|gb|AAL79350.1|AC099402_14 Putative membrane-associated salt-inducible protein [Oryza sativa]
          Length = 959

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 9/172 (5%)

Query: 68  DPFIVTHALRSAPNADSALSIME-ALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           D   V   L++ P    A      A  +   F H++ T  ++  +L ++ R   +  L+ 
Sbjct: 429 DSHTVARVLKAHPPLHKAFLFFRLAAGAGGGFRHDRFTYTSMLHLLGEAGRVPAMMRLLA 488

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR-AKLLST-ESYNIVMSVYAK 184
           ++  +     +  F  +M W + +GD++  +  W E R R  K   T  SY   + +   
Sbjct: 489 EMLRAGVDPDAATFTTVMHWLAHAGDVDAAMRVWEEMRARKGKCRPTLVSYTACVKILFD 548

Query: 185 TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM 236
            G+  EA E F++++ EG  P+ +TYTV+IEHL N+G      EVF  +P M
Sbjct: 549 AGRPAEAREVFQEMVAEGLRPSCKTYTVLIEHLANVG------EVFDQMPTM 594



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 3/176 (1%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVA-YQPGYTHDVYALEKMLT 414
           WS     LL+     W +  V +VL+       A+ FF   A    G+ HD +    ML 
Sbjct: 413 WSAARPLLLSLPGLAWDSHTVARVLKAHPPLHKAFLFFRLAAGAGGGFRHDRFTYTSMLH 472

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI 474
           +L   G V  + RL+A++   G+    +T   ++ +   +   DAA++ + + R   G  
Sbjct: 473 LLGEAGRVPAMMRLLAEMLRAGVDPDAATFTTVMHWLAHAGDVDAAMRVWEEMRARKGKC 532

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
                ++ Y++ ++ L    R  +A  V +EM+  G+ P  +T++ L+ H A  G+
Sbjct: 533 R--PTLVSYTACVKILFDAGRPAEAREVFQEMVAEGLRPSCKTYTVLIEHLANVGE 586


>gi|15224262|ref|NP_179484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099137|sp|O64624.1|PP163_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g18940
 gi|3004555|gb|AAC09028.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|38564280|gb|AAR23719.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|330251736|gb|AEC06830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 100/497 (20%), Positives = 197/497 (39%), Gaps = 69/497 (13%)

Query: 86  LSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQ 145
           L +++ ++S      ++ T   + +  A+     E K    ++ S  +   +V +  L+Q
Sbjct: 266 LGVLDEMRSK-GLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQ 324

Query: 146 WYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP 205
            +  +G     LS   E  + +    + +YN +++ Y + G + EA      +  +G +P
Sbjct: 325 VFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMP 384

Query: 206 NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL 265
           N+ TYT +I+     GK D AL++F ++        +  Y  ++       R +E   +L
Sbjct: 385 NAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKML 444

Query: 266 NEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREML-----PDKRIKNVRYYEDGSD 319
            +M+ +G  P RA     L      G  +  N   REM      PD+   N      G  
Sbjct: 445 CDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRC 504

Query: 320 DDE-DENDDNNSGVRIAYGVQLKPWLDPKALANTL---DEW-SPEVVSLLADAKFVWTTR 374
             E D +       R  +   +  +    AL N L    +W S E V  ++D K      
Sbjct: 505 GSEVDASKMYGEMTRAGFNACVTTY---NALLNALARKGDWRSGENV--ISDMKS----- 554

Query: 375 LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
                 + FK  ET++                     ML   A+ G+   ++R+  +++ 
Sbjct: 555 ------KGFKPTETSYSL-------------------MLQCYAKGGNYLGIERIENRIKE 589

Query: 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL---------MLLYSS 485
             +   +  +R +             L A    R L G    F L         M++++S
Sbjct: 590 GQIFPSWMLLRTL-------------LLANFKCRALAGSERAFTLFKKHGYKPDMVIFNS 636

Query: 486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
           +L   T+      A  +LE +   G+ PD+ T++ LM  +  +G+    +++   + ++ 
Sbjct: 637 MLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQ 696

Query: 546 VEPDAYMFKVLIQAYCK 562
           ++PD   +  +I+ +C+
Sbjct: 697 LKPDLVSYNTVIKGFCR 713



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 102/496 (20%), Positives = 193/496 (38%), Gaps = 67/496 (13%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T +AL  V  K+    E  +++ ++  +     SV +  L+  Y  +G  +         
Sbjct: 318 TYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMM 377

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
            ++  + +  +Y  V+  Y K GK  EA++ F  + + G +PN+ TY  ++  L   GK 
Sbjct: 378 TKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLL---GKK 434

Query: 224 DSALEVFSALPLMR-----IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR- 277
             + E+   L  M+       R +   ++ + G  G+++F     +  EM+  G  P R 
Sbjct: 435 SRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKF--VNRVFREMKSCGFEPDRD 492

Query: 278 AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE-------------DGSDDDEDE 324
                +      G    A++   EM        V  Y               G +   D 
Sbjct: 493 TFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDM 552

Query: 325 NDDNNSGVRIAYGVQLKPW------LDPKALANTLDE------WSPEVVSLLADAKFVWT 372
                     +Y + L+ +      L  + + N + E      W      LLA+ K    
Sbjct: 553 KSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFK---- 608

Query: 373 TRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKL 432
               C+ L      E A+  F     + GY  D+     ML+I  R+   +  + ++  +
Sbjct: 609 ----CRAL---AGSERAFTLF----KKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESI 657

Query: 433 RSDGMRLPFSTIRLIIDFY---GISKKADAALKAFHDDRTLCGPISKFKLMLL-YSSLLR 488
           R DG+     T   ++D Y   G   KA+  LK            S+ K  L+ Y+++++
Sbjct: 658 REDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEK--------SQLKPDLVSYNTVIK 709

Query: 489 TLTKCKRDF--DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
               C+R    +A+ +L EM   GI P + T++  +  +   G    ++ +   + +N  
Sbjct: 710 GF--CRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDC 767

Query: 547 EPDAYMFKVLIQAYCK 562
            P+   FK+++  YC+
Sbjct: 768 RPNELTFKMVVDGYCR 783



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 81/408 (19%), Positives = 159/408 (38%), Gaps = 55/408 (13%)

Query: 169 LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALE 228
           LL   +Y  ++  Y++TGK  +A++ F ++ + G  P   TY V+++    +G+  S  +
Sbjct: 207 LLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGR--SWRK 264

Query: 229 VFSALPLMRIKRTSKQYLILVEGFVGVER---FDEAKSLLNEMRDDGKFPGRAMRVA-LE 284
           +   L  MR K                 R     EAK    E++  G  PG     A L+
Sbjct: 265 ILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQ 324

Query: 285 RMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGS--DDDEDENDDNNSGVRIAYGVQLKP 342
              + G    A   L+EM            E+ S   D    N+   + VR  +      
Sbjct: 325 VFGKAGVYTEALSVLKEM------------EENSCPADSVTYNELVAAYVRAGFS----- 367

Query: 343 WLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGY 402
               K  A  ++  + + V  + +A   +TT  V          + A   F +   + G 
Sbjct: 368 ----KEAAGVIEMMTKKGV--MPNA-ITYTT--VIDAYGKAGKEDEALKLF-YSMKEAGC 417

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGM---RLPFSTIRLIIDFYGISKKADA 459
             +      +L++L +      + +++  ++S+G    R  ++T+  +    G+ K  + 
Sbjct: 418 VPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNR 477

Query: 460 ALK-----AFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
             +      F  DR              +++L+    +C  + DA  +  EM  +G    
Sbjct: 478 VFREMKSCGFEPDRD------------TFNTLISAYGRCGSEVDASKMYGEMTRAGFNAC 525

Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           V T++ L+   A +GD +  + + S ++  G +P    + +++Q Y K
Sbjct: 526 VTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAK 573



 Score = 47.0 bits (110), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 41/210 (19%), Positives = 86/210 (40%), Gaps = 13/210 (6%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           V  A   A   D AL +  ++K       N  T +A+ ++L K  R++E+  ++ D+ S+
Sbjct: 392 VIDAYGKAGKEDEALKLFYSMK-EAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSN 450

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
                   +  ++      G  + V   + E +        +++N ++S Y + G   +A
Sbjct: 451 GCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDA 510

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE- 250
            + + ++   G      TY  ++  L   G   S   V S +     K T   Y ++++ 
Sbjct: 511 SKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQC 570

Query: 251 -----GFVGVERFDEAKSLLNEMRDDGKFP 275
                 ++G+ER +      N +++   FP
Sbjct: 571 YAKGGNYLGIERIE------NRIKEGQIFP 594



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 88/216 (40%), Gaps = 17/216 (7%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           D   +E  + IL R     +  +L+ K+      L       I+  Y  + K + A+  F
Sbjct: 174 DHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLF 233

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAI-NVLEEMIFSGIVPDVQTFSGLMY 523
              + + GP      ++ Y+ +L    K  R +  I  VL+EM   G+  D  T S ++ 
Sbjct: 234 ERMKEM-GPSPT---LVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLS 289

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMP 571
             A +G  +  ++ F+ ++  G EP    +  L+Q + K             +  ++   
Sbjct: 290 ACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPA 349

Query: 572 DAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
           D+ T   L  +  + G  KEAA V E   K   +P+
Sbjct: 350 DSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPN 385


>gi|449516876|ref|XP_004165472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g01390-like [Cucumis sativus]
          Length = 737

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 77/166 (46%)

Query: 68  DPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD 127
           D +++   L++ P  +          +   F H+Q T   +  +  ++ R   +  +   
Sbjct: 167 DSYLINQVLKTHPPLEKTWLFFNWASTLQVFKHDQYTYTTMLDIFGEAGRISSMNYVFQQ 226

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           +        +V + +LM W S SGD++  +  W E +      +  SY   + +    G+
Sbjct: 227 MKEKGIKIDAVTYTSLMHWRSNSGDVDGAIKVWKEMKANGCHPTVVSYTAYIKILLDNGQ 286

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
             EA  T+++++  G  PN  TYT+++E+L+  GK   AL++FS +
Sbjct: 287 INEATATYKKMLQSGLSPNCCTYTILMEYLIGEGKCKEALDIFSKM 332



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 91/193 (47%), Gaps = 6/193 (3%)

Query: 371 WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIA 430
           W + L+ +VL+     E  W FF W +    + HD Y    ML I    G +  ++ +  
Sbjct: 166 WDSYLINQVLKTHPPLEKTWLFFNWASTLQVFKHDQYTYTTMLDIFGEAGRISSMNYVFQ 225

Query: 431 KLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR-TLCGPISKFKLMLLYSSLLRT 489
           +++  G+++   T   ++ +   S   D A+K + + +   C P      ++ Y++ ++ 
Sbjct: 226 QMKEKGIKIDAVTYTSLMHWRSNSGDVDGAIKVWKEMKANGCHPT-----VVSYTAYIKI 280

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
           L    +  +A    ++M+ SG+ P+  T++ LM +   +G  K    +FS ++  GV PD
Sbjct: 281 LLDNGQINEATATYKKMLQSGLSPNCCTYTILMEYLIGEGKCKEALDIFSKMQDAGVYPD 340

Query: 550 AYMFKVLIQAYCK 562
                +LIQ  CK
Sbjct: 341 KAACNILIQKCCK 353



 Score = 39.7 bits (91), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+++L    +  R      V ++M   GI  D  T++ LM+  +  GD     K++  ++
Sbjct: 204 YTTMLDIFGEAGRISSMNYVFQQMKEKGIKIDAVTYTSLMHWRSNSGDVDGAIKVWKEMK 263

Query: 543 QNGVEPDAYMFKVLIQ------------AYCKYLSNSNLMPDAATKELLKKSLWKEGRRK 590
            NG  P    +   I+            A  K +  S L P+  T  +L + L  EG+ K
Sbjct: 264 ANGCHPTVVSYTAYIKILLDNGQINEATATYKKMLQSGLSPNCCTYTILMEYLIGEGKCK 323

Query: 591 EA 592
           EA
Sbjct: 324 EA 325


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 102/467 (21%), Positives = 177/467 (37%), Gaps = 115/467 (24%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAI-PNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           +YN+++S Y K+G+    ++   QV+D   + P+  TY  ++  L + GKL  A+EV   
Sbjct: 186 TYNVLISGYCKSGE----IDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDR 241

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGF 291
                       Y IL+E         +A  LL+EMR+ G  P      V +  + + G 
Sbjct: 242 QLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGR 301

Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKP------WLD 345
           +  A +FL  M       NV                      I + + L+       W+D
Sbjct: 302 LDEAIKFLNNMPSYGCQPNV----------------------ITHNIILRSMCSTGRWMD 339

Query: 346 PKALANTL--DEWSPEVVSLLADAKFVWTTRLVCKVL-------RHFKSPETA-----WH 391
            + L + +     SP VV+      F+    L+ + +        H  +P +       H
Sbjct: 340 AEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLH 399

Query: 392 FFCW------------VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
            FC             +    G   D+     +LT L + G V++   ++ +L S G   
Sbjct: 400 GFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKG--- 456

Query: 440 PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDA 499
                                          C P+     ++ Y++++  L+K  +   A
Sbjct: 457 -------------------------------CSPV-----LITYNTVIDGLSKVGKTERA 480

Query: 500 INVLEEMIFSGIVPDVQTFSGLMYHFALQG--DEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           I +L+EM   G+ PD+ T+S L+   + +G  DE I  K F  +   G+ P+A  +  ++
Sbjct: 481 IKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAI--KFFHDLEGLGIRPNAITYNSIM 538

Query: 558 QAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
              CK            Y+ +    P  AT  +L + +  EG  KEA
Sbjct: 539 LGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEA 585



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 9/121 (7%)

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           LR L +     D    LE M++ G +PD+   + L+  F   G  K    +  ++ Q+G 
Sbjct: 121 LRRLVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGA 180

Query: 547 EPDAYMFKVLIQAYCK---------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
            PD   + VLI  YCK          L   N+ PD  T   + ++L   G+ K+A  V +
Sbjct: 181 VPDVITYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLD 240

Query: 598 R 598
           R
Sbjct: 241 R 241



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 10/226 (4%)

Query: 47  RLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLH 106
           ++ +   + NSLS        +P +  H        D A+  ++ + S   +  +  T +
Sbjct: 381 KMPMHGCTPNSLS-------YNPLL--HGFCKEKKMDRAIEYLDIMVSRGCYP-DIVTYN 430

Query: 107 ALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR 166
            L T L K  +      ++  +SS     V + +  ++   S  G  E  +   +E R++
Sbjct: 431 TLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRK 490

Query: 167 AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
                  +Y+ ++S  ++ GK  EA++ F  +   G  PN+ TY  ++  L    + D A
Sbjct: 491 GLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRA 550

Query: 227 LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           ++  + +   R K T   Y IL+EG        EA  LLNE+   G
Sbjct: 551 IDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRG 596



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 80/414 (19%), Positives = 158/414 (38%), Gaps = 72/414 (17%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  +++    SG L+  +   +   Q+       +Y I++    K     +A++   +
Sbjct: 217 VTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDE 276

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + ++G+ P+  TY V+I  +   G+LD A++  + +P    +     + I++       R
Sbjct: 277 MRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGR 336

Query: 258 FDEAKSLLNEMRDDGKFP------------------GRAMRVALERMQEMGFIQGA---N 296
           + +A+ LL++M   G  P                  GRA+ + LE+M   G    +   N
Sbjct: 337 WMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDI-LEKMPMHGCTPNSLSYN 395

Query: 297 EFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALA-NTLDE 355
             L     +K++     Y D               + ++ G        P  +  NTL  
Sbjct: 396 PLLHGFCKEKKMDRAIEYLD---------------IMVSRGCY------PDIVTYNTL-- 432

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
               + +L  D K      +  ++L    S               G +  +     ++  
Sbjct: 433 ----LTALCKDGK----VDVAVEILNQLSS--------------KGCSPVLITYNTVIDG 470

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
           L++ G  E   +L+ ++R  G++    T   ++       K D A+K FHD   L     
Sbjct: 471 LSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGL----G 526

Query: 476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
                + Y+S++  L K ++   AI+ L  MI     P   T++ L+   A +G
Sbjct: 527 IRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEG 580



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 86/214 (40%), Gaps = 20/214 (9%)

Query: 387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
           E  + F   + Y+ G   D+     ++    R G  +    ++  L   G      T  +
Sbjct: 131 EDGFKFLESMVYR-GDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNV 189

Query: 447 IIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
           +I  Y  S + D AL+    DR    P      ++ Y+++LRTL    +   A+ VL+  
Sbjct: 190 LISGYCKSGEIDNALQVL--DRMNVAPD-----VVTYNTILRTLCDSGKLKQAMEVLDRQ 242

Query: 507 IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC----- 561
           +     PDV T++ L+     +       KL   +R  G +PD   + VLI   C     
Sbjct: 243 LQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRL 302

Query: 562 ----KYLSNS---NLMPDAATKELLKKSLWKEGR 588
               K+L+N       P+  T  ++ +S+   GR
Sbjct: 303 DEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGR 336



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 73/173 (42%), Gaps = 1/173 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+      G +++ +   N+   +       +YN V+   +K GK   A++   +
Sbjct: 427 VTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDE 486

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +  +G  P+  TY+ ++  L   GK+D A++ F  L  + I+  +  Y  ++ G     +
Sbjct: 487 MRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQ 546

Query: 258 FDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIK 309
            D A   L  M      P  A   + +E +   G  + A + L E+     +K
Sbjct: 547 TDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVK 599


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 102/455 (22%), Positives = 175/455 (38%), Gaps = 62/455 (13%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN ++S + K  +   A     ++   G +P+  TY +MI    + GKLD ALE+F  L
Sbjct: 140 AYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEEL 199

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
                + T   Y IL+E  +     D A  LL+EM   G  P        + +     I+
Sbjct: 200 LKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEP--------DTLTYNAIIR 251

Query: 294 GANEFLREMLPDKRIKNVRYYED-GSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
           G     +EM+ DK  + +R     G   D            I Y + L+  L       +
Sbjct: 252 G---MCKEMMVDKAFELLRSLSSRGCKPD-----------IITYNILLRTLL-------S 290

Query: 353 LDEWS------PEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDV 406
             +WS       E++S+      V  + L+  + R  K  E           + G   D 
Sbjct: 291 RGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLL--RSMKEKGLKPDA 348

Query: 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD 466
           Y  + ++    R G ++L    +  + SDG          I+     + KAD AL+ F  
Sbjct: 349 YCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEK 408

Query: 467 -DRTLCGP-ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
            D   C P +S       Y++L   L      + A+ ++ +++  GI PD  T++ L+  
Sbjct: 409 LDEVGCPPNVSS------YNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISC 462

Query: 525 FALQG--DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLM 570
               G  DE I  +L   ++     P+   + +++   CK             ++     
Sbjct: 463 LCRDGMVDEAI--ELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQ 520

Query: 571 PDAATKELLKKSLWKEGRRKEAAAVEERCEKINDV 605
           P+  T  LL + +   G R EA  +      +N +
Sbjct: 521 PNETTYILLIEGIGFSGLRAEAMELANSLHGMNAI 555



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 26/223 (11%)

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL----CGPIS 475
           G +++  +L+ ++ S G+     T   II   G+ K+     KAF   R+L    C P  
Sbjct: 222 GGIDVAMKLLDEMLSKGLEPDTLTYNAII--RGMCKEM-MVDKAFELLRSLSSRGCKPD- 277

Query: 476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ 535
               ++ Y+ LLRTL    +  +   ++ EMI  G  P+V T S L+      G  +   
Sbjct: 278 ----IITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAV 333

Query: 536 KLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSL 583
            L   +++ G++PDAY +  LI  +C+            Y+ +   +PD      +   L
Sbjct: 334 NLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGL 393

Query: 584 WKEGRRKEAAAVEERCEKINDVPSLALRGHIWAV--SSADLTR 624
            + G+  +A  V E+ +++   P+++    +++   SS D  R
Sbjct: 394 CRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYR 436



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 70/154 (45%), Gaps = 2/154 (1%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           VN+  +M     +G  +  L  + +  +     +  SYN + S    +G  + A+E   +
Sbjct: 384 VNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILK 443

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++++G  P+  TY  +I  L   G +D A+E+   +   R +     Y I++ G   V R
Sbjct: 444 LLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNR 503

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGF 291
            ++A  +L  M + G  P     + L  ++ +GF
Sbjct: 504 ANDAIEVLAAMTEKGCQPNETTYILL--IEGIGF 535



 Score = 46.2 bits (108), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 104/255 (40%), Gaps = 30/255 (11%)

Query: 366 DAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELV 425
           D K V   +L+ +  R  K  E+ +   C V    GYT DV    K++       ++   
Sbjct: 66  DFKEVHLMKLLNRSCRAGKYNESLYFLECMV--DKGYTPDVILCTKLIKGFFNSRNIGKA 123

Query: 426 DRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL--MLLY 483
            R++  L   G    F+   LI  F   ++  +A       +R L    S+  L  ++ Y
Sbjct: 124 TRVMEILERYGKPDVFAYNALISGFIKANQLENA-------NRVLDRMKSRGFLPDVVTY 176

Query: 484 SSLLRTL-TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           + ++ +  ++ K D  A+ + EE++     P V T++ L+    L G   +  KL   + 
Sbjct: 177 NIMIGSFCSRGKLDL-ALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEML 235

Query: 543 QNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAAT-----KELLKKSLWK 585
             G+EPD   +  +I+  CK             LS+    PD  T     + LL +  W 
Sbjct: 236 SKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWS 295

Query: 586 EGRRKEAAAVEERCE 600
           EG +  +  +   C+
Sbjct: 296 EGEKLISEMISIGCK 310



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 36/178 (20%), Positives = 74/178 (41%), Gaps = 1/178 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + +  L++     G +++ +   +E   +     T +YN ++    K     +A E  R 
Sbjct: 209 ITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRS 268

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G  P+  TY +++  L++ GK     ++ S +  +  K     + IL+       +
Sbjct: 269 LSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGK 328

Query: 258 FDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
            +EA +LL  M++ G  P        +      G +  A EFL  M+ D  + ++  Y
Sbjct: 329 VEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNY 386


>gi|357517409|ref|XP_003628993.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523015|gb|AET03469.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 819

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 103/443 (23%), Positives = 183/443 (41%), Gaps = 65/443 (14%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           S NF  LM     S +L      ++   +   L+   +Y   ++ Y K GK  EAV  F 
Sbjct: 208 SCNF--LMSSLVKSNELHKSFRVFDAMCRGGVLIDVYTYATAINAYCKGGKIDEAVGLFL 265

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           ++ + G +PN  TY  +I+ L   G+L+ AL     +   ++  +   Y ILV G V  E
Sbjct: 266 KMGEGGVLPNVVTYNNLIDGLCKSGRLEEALMFKGRMVENKVNPSLVTYGILVNGLVKFE 325

Query: 257 RFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
           +FDEA S+L E                  M   GF    NEF+   L D       Y   
Sbjct: 326 KFDEANSVLVE------------------MYSKGF--SPNEFVFNALIDG------YSRK 359

Query: 317 GSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALA-NTL---------DEWSPEVVSLLAD 366
           G+ DD          +R+   + LK  L P A+  NTL          E + +V+  L  
Sbjct: 360 GNMDD---------ALRVRDDMTLK-GLKPNAVTHNTLLQGFCRTNQMEQAEQVLEYLL- 408

Query: 367 AKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTIL----ARHG-H 421
           +  +      C  + H     + +     +  +     ++   + +LT+L     + G H
Sbjct: 409 SNVLSVNEDACSYVLHLLCKSSKFDSALKIV-KALLLRNIKVNDSLLTLLVCGLCKCGKH 467

Query: 422 VELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLML 481
           +E +D         G+    +T   ++  YG+ ++ +       +   +C  + +  L+L
Sbjct: 468 LEAIDLWFRLADKKGLAANTTTSNALL--YGLCERGN-----MEEVFPVCKEMVERGLVL 520

Query: 482 ---LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF 538
               Y++L+    K  +  +A  + E+M+  G  PD  T++ LM   A +G    V ++ 
Sbjct: 521 DGISYNTLIFGCCKSGKIEEAFKLKEKMMKQGFKPDTYTYNFLMKGLADKGKMDDVGRVL 580

Query: 539 SMVRQNGVEPDAYMFKVLIQAYC 561
              + +GV P+ Y + ++++ YC
Sbjct: 581 HEAKDHGVVPNIYTYALMLEGYC 603



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 2/198 (1%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           V H L  +   DSAL I++AL    N   N S L  L   L K  ++ E   L   ++  
Sbjct: 422 VLHLLCKSSKFDSALKIVKALLLR-NIKVNDSLLTLLVCGLCKCGKHLEAIDLWFRLADK 480

Query: 132 KFLNVSVNFMN-LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           K L  +    N L+      G++E V     E  +R  +L   SYN ++    K+GK  E
Sbjct: 481 KGLAANTTTSNALLYGLCERGNMEEVFPVCKEMVERGLVLDGISYNTLIFGCCKSGKIEE 540

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A +   +++ +G  P++ TY  +++ L + GK+D    V        +      Y +++E
Sbjct: 541 AFKLKEKMMKQGFKPDTYTYNFLMKGLADKGKMDDVGRVLHEAKDHGVVPNIYTYALMLE 600

Query: 251 GFVGVERFDEAKSLLNEM 268
           G+   +R D A SL N++
Sbjct: 601 GYCNADRIDNAVSLFNKL 618



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 99/515 (19%), Positives = 194/515 (37%), Gaps = 82/515 (15%)

Query: 93  KSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD 152
           K NP+      T   L   L K ++  E  +++ ++ S  F      F  L+  YS  G+
Sbjct: 306 KVNPSLV----TYGILVNGLVKFEKFDEANSVLVEMYSKGFSPNEFVFNALIDGYSRKGN 361

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
           ++  L   ++   +    +  ++N ++  + +T +  +A +    ++      N    + 
Sbjct: 362 MDDALRVRDDMTLKGLKPNAVTHNTLLQGFCRTNQMEQAEQVLEYLLSNVLSVNEDACSY 421

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           ++  L    K DSAL++  AL L  IK       +LV G     +  EA  L   + D  
Sbjct: 422 VLHLLCKSSKFDSALKIVKALLLRNIKVNDSLLTLLVCGLCKCGKHLEAIDLWFRLADK- 480

Query: 273 KFPGRAMRVALERMQEMGFIQGANEFLREMLP-DKRIKNVRYYEDGSDDDEDENDDNNSG 331
              G A           G  +  N  + E+ P  K +       DG              
Sbjct: 481 --KGLAANTTTSNALLYGLCERGN--MEEVFPVCKEMVERGLVLDG-------------- 522

Query: 332 VRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWH 391
             I+Y              NTL      +       K     +L  K+++    P+T   
Sbjct: 523 --ISY--------------NTL------IFGCCKSGKIEEAFKLKEKMMKQGFKPDT--- 557

Query: 392 FFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY 451
                     YT++      ++  LA  G ++ V R++ + +  G+     T  L+++ Y
Sbjct: 558 ----------YTYNF-----LMKGLADKGKMDDVGRVLHEAKDHGVVPNIYTYALMLEGY 602

Query: 452 GISKKADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSG 510
             + + D A+  F+         +K +L  ++Y+ L+   +K     +A  + + M  S 
Sbjct: 603 CNADRIDNAVSLFNKL-----VYNKVELSYVVYNILIAAHSKAGNFTEAFKLRDAMRSSN 657

Query: 511 IVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------- 563
           I P + T+S +++        +  + +F  +R  G+ P+ + +  LI  YCK        
Sbjct: 658 IHPTIFTYSSIIHGMCCNDLVEEAKGIFEEMRNEGLMPNVFCYTALIGGYCKLGQMDQIE 717

Query: 564 -----LSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
                ++++ + P+  T  ++     K G  KEA 
Sbjct: 718 SILQEMTSNCIQPNKITYTIMIDGYCKMGNTKEAT 752



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/240 (20%), Positives = 97/240 (40%), Gaps = 49/240 (20%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           + G+  D Y    ++  LA  G ++ V R++ + +  G+     T  L+++ Y  + + D
Sbjct: 550 KQGFKPDTYTYNFLMKGLADKGKMDDVGRVLHEAKDHGVVPNIYTYALMLEGYCNADRID 609

Query: 459 AALKAFHD------------DRTLCGPISK-------FKL------------MLLYSSLL 487
            A+  F+                L    SK       FKL            +  YSS++
Sbjct: 610 NAVSLFNKLVYNKVELSYVVYNILIAAHSKAGNFTEAFKLRDAMRSSNIHPTIFTYSSII 669

Query: 488 RTLTKCKRDF--DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
             +  C  D   +A  + EEM   G++P+V  ++ L+  +   G    ++ +   +  N 
Sbjct: 670 HGM--CCNDLVEEAKGIFEEMRNEGLMPNVFCYTALIGGYCKLGQMDQIESILQEMTSNC 727

Query: 546 VEPDAYMFKVLIQAYCKYLSNS-------------NLMPDAATKELLKKSLWKEGRRKEA 592
           ++P+   + ++I  YCK + N+              + PD  T  +L+K   KE   +E 
Sbjct: 728 IQPNKITYTIMIDGYCK-MGNTKEATKLLNEMIANGISPDTVTYTVLQKGYCKENELEET 786



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 45/96 (46%)

Query: 190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV 249
           EA   F ++ +EG +PN   YT +I     LG++D    +   +    I+     Y I++
Sbjct: 680 EAKGIFEEMRNEGLMPNVFCYTALIGGYCKLGQMDQIESILQEMTSNCIQPNKITYTIMI 739

Query: 250 EGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER 285
           +G+  +    EA  LLNEM  +G  P       L++
Sbjct: 740 DGYCKMGNTKEATKLLNEMIANGISPDTVTYTVLQK 775



 Score = 46.2 bits (108), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 7/175 (4%)

Query: 71  IVTHALRSAPNADSALSIMEALKS---NPNFSHNQSTLHALATVLAKSQRNHELKTLIGD 127
           I+  A   A N   A  + +A++S   +P      S +H +      +    E K +  +
Sbjct: 632 ILIAAHSKAGNFTEAFKLRDAMRSSNIHPTIFTYSSIIHGMCC----NDLVEEAKGIFEE 687

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           + +   +     +  L+  Y   G ++ + S   E        +  +Y I++  Y K G 
Sbjct: 688 MRNEGLMPNVFCYTALIGGYCKLGQMDQIESILQEMTSNCIQPNKITYTIMIDGYCKMGN 747

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
             EA +   ++I  G  P++ TYTV+ +      +L+  L+  +A+PL  I  T+
Sbjct: 748 TKEATKLLNEMIANGISPDTVTYTVLQKGYCKENELEETLQGDTAVPLEEITYTT 802


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 95/488 (19%), Positives = 198/488 (40%), Gaps = 83/488 (17%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           F +L++ Y+ SGD   +   ++  ++  ++   +++ +V   Y K     +A+E F +++
Sbjct: 83  FYSLIENYANSGDFGTLFQVFDRMKRERRVFIEKNFILVFRAYGKAHLPEKAIELFGRMV 142

Query: 200 DEGAI--------------------------------------PNSRTYTVMIEHLVNLG 221
           DE                                         PN  ++ ++I+ +  LG
Sbjct: 143 DEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLG 202

Query: 222 KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG----- 276
            +D A+EVF  + + + +     Y  L++G    +R DEA  LL+EM+ +G FP      
Sbjct: 203 LVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFN 262

Query: 277 --------RAMRVALERMQEMGFIQGA-------NEFLREMLPDKRIKNVRYYEDGSDDD 321
                   +   V + ++ +  F++G        N  +  +    ++       D     
Sbjct: 263 VLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVAS 322

Query: 322 EDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLR 381
           +   +D   G  I   V+    +D   L ++L+E            ++ ++T L+  + +
Sbjct: 323 KCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHA------NEYAYST-LISGLFK 375

Query: 382 HFKSPETA--WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
             KS E    W        QP    ++     ++  L R G ++    ++ ++ + G   
Sbjct: 376 EEKSEEAMGLWKKMVEKGCQP----NIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTP 431

Query: 440 -PFSTIRLIIDFY--GISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
             F+   LI  F+  G S+KA    K    +   C P       + YS L+  L +  + 
Sbjct: 432 NAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNN--CVPNE-----ICYSVLIHGLCEDGKL 484

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS--MVRQNGVEPDAYMFK 554
            +A+ +   M+  G+ PDV  +S +++     G  ++  KLF+  + +++  +PD   + 
Sbjct: 485 REAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYN 544

Query: 555 VLIQAYCK 562
           +L++A CK
Sbjct: 545 ILLRALCK 552



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 83/212 (39%), Gaps = 1/212 (0%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T   L   L K  R  E   L+ ++        SV F  L+      GD+  V    +  
Sbjct: 225 TYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNM 284

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
             +  + +  +YN +++     GK  +AV    +++    +PN  TY  +I  LV  G+ 
Sbjct: 285 FLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRS 344

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
              + + S+L           Y  L+ G    E+ +EA  L  +M + G  P   +  AL
Sbjct: 345 VDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSAL 404

Query: 284 -ERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
            + +   G +  A E L EM+      N   Y
Sbjct: 405 IDGLCREGKLDEAKEILCEMVNKGCTPNAFTY 436



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 89/204 (43%), Gaps = 10/204 (4%)

Query: 107 ALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR 166
           AL   L +  +  E K ++ ++ +      +  + +L++ +  +G+ +  +  W E  + 
Sbjct: 403 ALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKN 462

Query: 167 AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
             + +   Y++++    + GK  EA+  +  ++  G  P+   Y+ MI  L N G ++  
Sbjct: 463 NCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVG 522

Query: 227 LEVFSALPLMRIKRTSKQ-----YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMR 280
           L++F+    M  + +  Q     Y IL+           A  LLN M D G  P      
Sbjct: 523 LKLFNE---MLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCN 579

Query: 281 VALERMQE-MGFIQGANEFLREML 303
           + L  ++E +   Q   EFL E++
Sbjct: 580 IFLNALREKLNPPQDGREFLDELV 603



 Score = 43.9 bits (102), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 76/175 (43%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N+ T + +   L    +  +  +L+  + +SK +   V +  L+      G     +   
Sbjct: 292 NEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLL 351

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           +   +R    +  +Y+ ++S   K  K+ EA+  +++++++G  PN   Y+ +I+ L   
Sbjct: 352 SSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCRE 411

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           GKLD A E+   +        +  Y  L++GF       +A  +  EM  +   P
Sbjct: 412 GKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVP 466



 Score = 43.1 bits (100), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 25/122 (20%), Positives = 59/122 (48%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS+L+  L K ++  +A+ + ++M+  G  P++  +S L+     +G     +++   + 
Sbjct: 366 YSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMV 425

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
             G  P+A+ +  LI+ + K             ++ +N +P+     +L   L ++G+ +
Sbjct: 426 NKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLR 485

Query: 591 EA 592
           EA
Sbjct: 486 EA 487



 Score = 42.4 bits (98), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 16/138 (11%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y +L+  L K  R  +A+ +L+EM   G  P   TF+ L+     +GD   V KL   + 
Sbjct: 226 YCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMF 285

Query: 543 QNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRK 590
             G  P+   +  +I   C              +  S  +P+  T   L   L K+GR  
Sbjct: 286 LKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSV 345

Query: 591 EA----AAVEERCEKIND 604
           +     +++EER    N+
Sbjct: 346 DGVHLLSSLEERGHHANE 363


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 105/524 (20%), Positives = 197/524 (37%), Gaps = 62/524 (11%)

Query: 101  NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
            N  T +AL  +L +++R      ++  +  +      V +  +++ Y   GD +  +   
Sbjct: 559  NTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVM 618

Query: 161  NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            N   QR    +  +YN ++  Y  +G    A+     + D G  P+  +YT +I     +
Sbjct: 619  NNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKI 678

Query: 221  GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAM 279
             K++SA  +F+ +    +      Y  L++G+   E+ D A SLL  M+  G  P  +  
Sbjct: 679  SKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTY 738

Query: 280  RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQ 339
             V +  + +     GA E  + M+ +    NV  Y     D   +N   +  + +     
Sbjct: 739  NVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTY-TAMIDGLCKNGSTSLALEM----- 792

Query: 340  LKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQ 399
                ++   L N L  +S  + +L  + K      L  ++ RH                 
Sbjct: 793  FNKMIEQGCLPNLL-TYSSLIRALGQEGKVEEAENLFAELERH----------------- 834

Query: 400  PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK--- 456
             G   D     KM+      G VE     + ++   G +    T  ++I   G+  +   
Sbjct: 835  -GLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIK--GLKNEYLL 891

Query: 457  ADAALKAFHDDRTLCG-----------PISKFKLMLL--------YSSLLRTLTKCKRDF 497
            AD  L A  D    C             +   KL  L         ++L+  L+   R F
Sbjct: 892  ADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWF 951

Query: 498  DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
            +A  +L  MI  G+ PD + ++ L+       +  +   +F  +   G E     +K LI
Sbjct: 952  EANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELI 1011

Query: 558  QAYCKY-------LSNSNLM-----PDAATKELLKKSLWKEGRR 589
             A C+        ++  N++     PD   + +L   L ++G +
Sbjct: 1012 CALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYK 1055



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 101/223 (45%), Gaps = 22/223 (9%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL-PFSTIRLIIDFYGISKKA 457
           Q G++ ++     ++      G+     R++  +R  G +   +S   LI  F  ISK  
Sbjct: 623 QRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISK-M 681

Query: 458 DAALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
           ++A   F++  D  LC P       + Y++L+    K ++   A ++LE M  SG  P+V
Sbjct: 682 ESAFGLFNEMVDDGLC-PNE-----VTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNV 735

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNS-------- 567
           QT++ L++    Q +    ++L  ++ + G+ P+   +  +I   CK  S S        
Sbjct: 736 QTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNK 795

Query: 568 ----NLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
                 +P+  T   L ++L +EG+ +EA  +    E+   +P
Sbjct: 796 MIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIP 838



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 6/151 (3%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTL 470
           ++  L + G+V   + ++ K+    M     T   +I  +      D+AL+ F+   +  
Sbjct: 391 VINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEG 450

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
           C P +     + YS+L+  L    R  +A +++ EMI  GI+P   T +G +      G 
Sbjct: 451 CEPNT-----VTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGC 505

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
            +   +LF  ++  G EP+ Y +  LI   C
Sbjct: 506 YEDAWRLFVDMKNKGCEPNVYTYTALISGLC 536



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 47/101 (46%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YN V++   K G   +A    ++V +    P++ TYT MI        LDSAL+VF+ + 
Sbjct: 388 YNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMA 447

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               +  +  Y  L+ G     R +EA  L+ EM   G  P
Sbjct: 448 KEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILP 488



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 7/173 (4%)

Query: 83  DSALSIMEALK---SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
           D+A S++E +K     PN       +H L      S      K +I       F NV V 
Sbjct: 717 DTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMI---EEGIFPNV-VT 772

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  ++     +G   L L  +N+  ++  L +  +Y+ ++    + GK  EA   F ++ 
Sbjct: 773 YTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELE 832

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
             G IP+  TY  MIE  +  GK++ A      +     + T   Y +L++G 
Sbjct: 833 RHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL 885



 Score = 38.9 bits (89), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 18/82 (21%), Positives = 42/82 (51%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +L+Y++++  L K     DA  +++++  S + PD  T++ ++     + D     ++F+
Sbjct: 385 LLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFN 444

Query: 540 MVRQNGVEPDAYMFKVLIQAYC 561
            + + G EP+   +  LI   C
Sbjct: 445 QMAKEGCEPNTVTYSTLINGLC 466


>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
          Length = 876

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 98/448 (21%), Positives = 169/448 (37%), Gaps = 84/448 (18%)

Query: 160 WNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219
           +++  Q   L  T +YN ++  Y K G    A   FR +++ G  P + T   ++     
Sbjct: 56  YSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCR 115

Query: 220 LGKLDSALEVFSALPLMRIKRTSKQYLIL------------------------------- 248
            G+L  A  +F  +PLM  +R    Y IL                               
Sbjct: 116 TGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRA 175

Query: 249 ----VEGFVGVERFDEAKSLLNEMRDDGKFPG----RAMRVALERMQEMGFIQGANEFLR 300
               + G     R  +A+ L + M  +G  P      AM V   ++  M       E + 
Sbjct: 176 FTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELME 235

Query: 301 E--MLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYG---VQLKPWLDPKALANTLDE 355
           +    PD    N   Y       E+  +  N+ V+  +    V     ++   +A   D+
Sbjct: 236 KNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDD 295

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
                 +L    K + +    CK+                         D+    K++  
Sbjct: 296 ------ALRMKNKMMSSK---CKL-------------------------DLQVFGKLINS 321

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPI 474
           L +   ++    L+ ++ ++G+     T   IID Y  S K D AL+     +R  C P 
Sbjct: 322 LIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPN 381

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
           +       Y+SL+  L K K+   A+ +L +M   GI+P+V T++ L+     + D    
Sbjct: 382 A-----WTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNA 436

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            +LF M+ QNG++PD + + VL  A CK
Sbjct: 437 FRLFEMMEQNGLKPDEHAYAVLTDALCK 464



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 114/499 (22%), Positives = 192/499 (38%), Gaps = 47/499 (9%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+   L  A     AL +   +K +   S N      L + L KS R  + + L   +  
Sbjct: 143 ILIQGLCDAKCVRKALVLFLMMKRD-GCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQ 201

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           +  +   + +  ++  YS  G +   L       +        +YN ++       K  E
Sbjct: 202 NGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQ-KTEE 260

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A E     + EG  P   T+T +I       K D AL + + +   + K   + +  L+ 
Sbjct: 261 AEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLIN 320

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIK 309
             +  +R  EAK LLNE+  +G  P      ++ +   + G +  A E L+ M  D    
Sbjct: 321 SLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQP 380

Query: 310 NVRYYEDGSDDDEDENDDNNSGVRIAYG-VQLKPWLDPKALANTL--DEWSPEVVSLLAD 366
           N   Y              NS   + YG V+ K      AL   +  D   P V++    
Sbjct: 381 NAWTY--------------NS---LMYGLVKDKKLHKAMALLTKMQKDGIIPNVIT---- 419

Query: 367 AKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVD 426
               +TT L  +   H    + A+  F  +  Q G   D +A   +   L + G  E   
Sbjct: 420 ----YTTLLQGQCDEH--DFDNAFRLF-EMMEQNGLKPDEHAYAVLTDALCKAGRAEEAY 472

Query: 427 RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL---CGPISKFKLMLLY 483
             I +    G+ L       +ID  G SK  +    A   +R +   C P S       Y
Sbjct: 473 SFIVR---KGVALTKVYYTTLID--GFSKAGNTDFAATLIERMIDEGCTPDS-----YTY 522

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           S LL  L K KR  +A+ +L++M   GI   +  ++ L+     +G     +++++ +  
Sbjct: 523 SVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTS 582

Query: 544 NGVEPDAYMFKVLIQAYCK 562
           +G +P A  + V I +YCK
Sbjct: 583 SGHKPSATTYTVFINSYCK 601



 Score = 46.2 bits (108), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 42/224 (18%), Positives = 95/224 (42%), Gaps = 9/224 (4%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI--GDISSSKFLNVSVNF 140
           D+A  + E ++ N     ++     L   L K+ R  E  + I    ++ +K     V +
Sbjct: 434 DNAFRLFEMMEQN-GLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTK-----VYY 487

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
             L+  +S +G+ +   +             + +Y++++    K  +  EA+    Q+  
Sbjct: 488 TTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSL 547

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
            G       YT++I+ ++  GK D A  +++ +     K ++  Y + +  +    R ++
Sbjct: 548 RGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLED 607

Query: 261 AKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREML 303
           A+ L+ +M  +G  P      + ++    MG+I  A   L+ M+
Sbjct: 608 AEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMV 651



 Score = 43.5 bits (101), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 14/61 (22%), Positives = 34/61 (55%)

Query: 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           V  +++  G++PD  T++ ++  +  +GD     + F ++ + G+EP+ +    L+  YC
Sbjct: 55  VYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYC 114

Query: 562 K 562
           +
Sbjct: 115 R 115



 Score = 42.4 bits (98), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 53/259 (20%), Positives = 101/259 (38%), Gaps = 30/259 (11%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDP-----FIVTHALRSAPNADSALSIMEALKSNP 96
           LID    A  ++ + +L   + D    P      ++ HAL      + AL I++ +    
Sbjct: 490 LIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQM---- 545

Query: 97  NFSHNQSTLHA----LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD 152
           +    + T+ A    +  +L + + +H  K +  +++SS     +  +   +  Y   G 
Sbjct: 546 SLRGIKCTIFAYTILIDEMLREGKHDHA-KRMYNEMTSSGHKPSATTYTVFINSYCKEGR 604

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
           LE       +  +        +YNI++      G    A  T ++++     PN  TY +
Sbjct: 605 LEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCL 664

Query: 213 MIEHLV----------------NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           +++HL+                NL +LD   ++   +    +  T   Y  L+ GF    
Sbjct: 665 LLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAG 724

Query: 257 RFDEAKSLLNEMRDDGKFP 275
           R +EA  LL+ M   G  P
Sbjct: 725 RLEEACLLLDHMCGKGLSP 743


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 101/467 (21%), Positives = 186/467 (39%), Gaps = 71/467 (15%)

Query: 133 FLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV 192
           F   S  + +L+  Y    +L      +    Q   L +  SY  ++  + + GK  EA+
Sbjct: 221 FCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEAL 280

Query: 193 ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
           E F Q+ ++G  P+  TYTV++     +GK   AL+ F  +    I+     Y +L++ F
Sbjct: 281 ELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYF 340

Query: 253 VGVERFDEAKSLLNEMRDDG----KFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRI 308
             V + DE   +L+ M + G      P  A+   ++   + G ++ A   L  M  +K  
Sbjct: 341 CKVGKMDEGMEMLSTMLEKGLVSSVVPFNAL---IDGYCKRGMMEDAICVLDSMKLNKVC 397

Query: 309 KNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLD-PKALANTLDE--WSPEVVSLLA 365
            N R Y +                 +  G   K  +D   AL N + E   SP +V+   
Sbjct: 398 PNSRTYNE-----------------LICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNT 440

Query: 366 DAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELV 425
               +   R+V          ++AW     +  + G+  D       +  L + G VE  
Sbjct: 441 LIHGLCKARVV----------DSAWRLH-HLMIKDGFVPDQRTFCAFIDCLCKMGKVEQA 489

Query: 426 DRLIAKLRSDGMRLPFSTIRLIIDFYGISKK-ADAAL----------------------- 461
            ++   L+             +ID Y  ++K +DA L                       
Sbjct: 490 HQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDG 549

Query: 462 ----KAFHDDRTLCGPISKFK---LMLLYSSLLRTLTKCKRDFDAINV-LEEMIFSGIVP 513
                   D  +L   + KF     +  Y+ L+  + + + DFD  N+ L++MI SG  P
Sbjct: 550 LRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILR-ESDFDRANMFLDQMISSGCQP 608

Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
           +V T++  +  +  QG     +++   +++ G+  D++++ VL+ AY
Sbjct: 609 NVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAY 655



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/431 (19%), Positives = 168/431 (38%), Gaps = 75/431 (17%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V++ NL+  +   G ++  L  + + ++        +Y ++++ + + GK  EA++ F +
Sbjct: 261 VSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEE 320

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +++ G  PN  TYTV+I++   +GK+D  +E+ S +    +  +   +  L++G+     
Sbjct: 321 MVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGM 380

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDG 317
            ++A  +L+ M+                             L ++ P+ R  N       
Sbjct: 381 MEDAICVLDSMK-----------------------------LNKVCPNSRTYN------- 404

Query: 318 SDDDEDENDDNNSGVRIAYGVQLKPWLD-PKALANTLDE--WSPEVVSLLADAKFVWTTR 374
                           +  G   K  +D   AL N + E   SP +V+       +   R
Sbjct: 405 ---------------ELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKAR 449

Query: 375 LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
           +V          ++AW     +  + G+  D       +  L + G VE   ++   L+ 
Sbjct: 450 VV----------DSAWRLH-HLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKE 498

Query: 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL---CGPISKFKLMLLYSSLLRTLT 491
                       +ID Y  ++K   A   F   R L   C P S     + ++ LL  L 
Sbjct: 499 KHAEANEFLYTALIDGYCKAEKFSDAHLLF--KRMLFEGCFPNS-----ITFNVLLDGLR 551

Query: 492 KCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAY 551
           K  +  DA+++++ M      P V T++ L+     + D          +  +G +P+  
Sbjct: 552 KEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVV 611

Query: 552 MFKVLIQAYCK 562
            +   I+AYC+
Sbjct: 612 TYTAFIKAYCR 622



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 99/466 (21%), Positives = 182/466 (39%), Gaps = 54/466 (11%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           S+N +++ + K G    A   F  ++  G   +S TYT +I     + +L  A +VF  +
Sbjct: 192 SFNTMVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIM 251

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFI 292
           P     R    Y  L+ GF  V + DEA  L  +M++DG FP      V +    E+G  
Sbjct: 252 PQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKE 311

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSD-----DDEDENDDNNSGVRIAYGVQLKPWLDPK 347
             A +F  EM+ +    NV  Y    D        DE            G+++   +  K
Sbjct: 312 TEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDE------------GMEMLSTMLEK 359

Query: 348 ALANTLDEWSPEV-----VSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVA----- 397
            L +++  ++  +       ++ DA  V  +  + KV  + ++       FC        
Sbjct: 360 GLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRA 419

Query: 398 -------YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF 450
                  Y+   + ++     ++  L +   V+   RL   +  DG      T    ID 
Sbjct: 420 MALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDC 479

Query: 451 YGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSG 510
                K + A + F   +      ++F    LY++L+    K ++  DA  + + M+F G
Sbjct: 480 LCKMGKVEQAHQVFESLKEKHAEANEF----LYTALIDGYCKAEKFSDAHLLFKRMLFEG 535

Query: 511 IVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA----------- 559
             P+  TF+ L+     +G  +    L  ++ +   +P  + + +LI+            
Sbjct: 536 CFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRAN 595

Query: 560 -YCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND 604
            +   + +S   P+  T     K+  ++GR  EA   EE   KI +
Sbjct: 596 MFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEA---EEMVVKIKE 638



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 104/254 (40%), Gaps = 16/254 (6%)

Query: 27  APFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSAL 86
            PF   +  Y +R  + D+I   + S   N +    N R  +  I     + +   D A+
Sbjct: 366 VPFNALIDGYCKRGMMEDAI-CVLDSMKLNKVCP--NSRTYNELICGFCRKKS--MDRAM 420

Query: 87  SIMEALKSN---PNFSHNQSTLHAL--ATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           +++  +  N   PN     + +H L  A V+  + R H L    G +   +       F 
Sbjct: 421 ALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQR------TFC 474

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
             +      G +E     +   +++    +   Y  ++  Y K  K  +A   F++++ E
Sbjct: 475 AFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFE 534

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G  PNS T+ V+++ L   GK++ A+ +   +     K T   Y IL+E  +    FD A
Sbjct: 535 GCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRA 594

Query: 262 KSLLNEMRDDGKFP 275
              L++M   G  P
Sbjct: 595 NMFLDQMISSGCQP 608



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 101/508 (19%), Positives = 196/508 (38%), Gaps = 65/508 (12%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+ ++   G ++  +   +   ++  + S   +N ++  Y K G   +A+     +    
Sbjct: 336 LIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNK 395

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             PNSRTY  +I        +D A+ + + +   ++      Y  L+ G       D A 
Sbjct: 396 VCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAW 455

Query: 263 SLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE---DGS 318
            L + M  DG  P  R     ++ + +MG ++ A++    +       N   Y    DG 
Sbjct: 456 RLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGY 515

Query: 319 DDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTL-DEWSPEVVSLLAD--AKF-----V 370
              E  +D +    R+ +       +    L + L  E   E    L D   KF     V
Sbjct: 516 CKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTV 575

Query: 371 WT-TRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
            T T L+ ++LR  +S     + F       G   +V      +    R G +   + ++
Sbjct: 576 HTYTILIEEILR--ESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMV 633

Query: 430 AKLRSDGMRLPFSTIRLIIDFYGISKKADAA----LKAFHDDRTLCGPISKFKLMLLYSS 485
            K++ +G+ L      ++++ YG   + D+A    ++ F    T C P  +      YS 
Sbjct: 634 VKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMF---DTGCEPSRQ-----TYSI 685

Query: 486 LLRTLTKCK-------------------------RDFDAINVL-EEMIFSGIVPDVQTFS 519
           LL+ L   K                          DF+ I +L E+M+  G VP+V T+S
Sbjct: 686 LLKHLIFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYS 745

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNS 567
            L+          +  +LF+ ++++G+ P   +   L+ + CK             +   
Sbjct: 746 KLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLGMHEEALRLLDSMMEY 805

Query: 568 NLMPDAATKELLKKSLWKEGRRKEAAAV 595
           N +    + +LL   L+++G +++A  +
Sbjct: 806 NHLAHLESYKLLVCGLFEQGNQEKAEEI 833



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/268 (19%), Positives = 102/268 (38%), Gaps = 62/268 (23%)

Query: 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDR-----LIAKLRSDGMRL- 439
           P TA +FF W+ YQ G+ H V++ + +L IL R+G +   +      + + + S   R  
Sbjct: 83  PLTALNFFKWIHYQHGFIHTVHSYQPLLFILVRNGFLRAAENVRNSMIKSCVSSHEARFV 142

Query: 440 --------------PFSTIRLIIDFYGISKKADAALKAFHDDRT---------------- 469
                          ++ + +++  +G+  + +   K   +D                  
Sbjct: 143 LNLLTHHEFSLSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAHCK 202

Query: 470 ----------LCGPISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
                      CG + KF        Y+SL+    K     DA  V E M   G + +  
Sbjct: 203 IGNVVVAKAYFCG-LMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEV 261

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------L 564
           +++ L++ F   G      +LF  ++++G  PD   + VL+ A+C+             +
Sbjct: 262 SYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEM 321

Query: 565 SNSNLMPDAATKELLKKSLWKEGRRKEA 592
             + + P+  T  +L     K G+  E 
Sbjct: 322 VENGIEPNVYTYTVLIDYFCKVGKMDEG 349



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 74/157 (47%), Gaps = 16/157 (10%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y++L+  L K +    A  +   MI  G VPD +TF   +      G  +   ++F 
Sbjct: 435 LVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFE 494

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKY--LSNSNLM----------PDAATKELLKKSLWKEG 587
            +++   E + +++  LI  YCK    S+++L+          P++ T  +L   L KEG
Sbjct: 495 SLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEG 554

Query: 588 RRKEAAAVEERCEKINDVPSLALRGHIWAVSSADLTR 624
           + ++A ++ +   K +  P++    H + +   ++ R
Sbjct: 555 KVEDAMSLVDVMGKFDAKPTV----HTYTILIEEILR 587


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 91/475 (19%), Positives = 180/475 (37%), Gaps = 57/475 (12%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SYN+V++   ++GK  +A++ F +++D G +PN  TY  MI+  V  G L++   +   +
Sbjct: 18  SYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQM 77

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFI 292
                K     Y +L+ G     R DE + L++EM     FP G    +  + +   G  
Sbjct: 78  LHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGES 137

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
           +       E L                                 GV L  +     L   
Sbjct: 138 RTMLSLFAESLKK-------------------------------GVMLGAYTCSILLNGL 166

Query: 353 LDEW----SPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTH---D 405
             +     + +V+ +L     V TT +   ++  +         FC +  Q    H   D
Sbjct: 167 CKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFC-IFEQMKSRHIRPD 225

Query: 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465
                 ++  L +   V   + L+ ++   G+     T   +ID YG + + +       
Sbjct: 226 HITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLS 285

Query: 466 DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF 525
           D +   G  S    ++ + S+++   K  +  +A+ +L++MI+  + P+ Q ++ ++  +
Sbjct: 286 DMQQK-GIKSD---VISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAY 341

Query: 526 ALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDA 573
              GD +    L   ++ +GV      + +L++  C+             L N  L PD 
Sbjct: 342 IESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDV 401

Query: 574 ATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAVSSADLTRVHSI 628
            +   +  +   +G   +A  + +   K    P+L    H    + A   RVH +
Sbjct: 402 VSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTY-HTLVSALASAGRVHDM 455



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 96/493 (19%), Positives = 186/493 (37%), Gaps = 82/493 (16%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T + L + L ++ R  E + L+ +++S         +  L    + +G+   +LS +
Sbjct: 85  NIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLF 144

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            E  ++  +L   + +I+++   K GK  +A +    ++  G +P +  Y  +I     +
Sbjct: 145 AESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQV 204

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR 280
             L  A  +F  +    I+     Y  L+ G   +E   +A+ L+ EM   G  P     
Sbjct: 205 RDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVE-- 262

Query: 281 VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQL 340
                + +     G  E    +L D + K ++     SD              I++G  +
Sbjct: 263 -TFNTLIDAYGTAGQLEKCFTVLSDMQQKGIK-----SD-------------VISFGSVV 303

Query: 341 KPWLDPKALANTLDEWSPEVVSLLADA--KFVWTTRLVCKVL--RHFKSPETAWHFFCWV 396
           K +     +        PE V++L D   K V     V   +   + +S +T   F    
Sbjct: 304 KAFCKNGKI--------PEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVE 355

Query: 397 AYQ-PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455
             +  G +  +     +L  L R   ++  + LI  LR+ G+R    +   II       
Sbjct: 356 KMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIIS------ 409

Query: 456 KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD-AINVLEEMIFSGIVPD 514
                          C                      K D D A+ +L+EM   GI P 
Sbjct: 410 -------------ACCN---------------------KGDTDKALELLQEMNKYGIRPT 435

Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAA 574
           ++T+  L+   A  G    ++ L+  +    VEP + ++ +++ AY +  ++S +     
Sbjct: 436 LRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVAS--- 492

Query: 575 TKELLKKSLWKEG 587
               LKK + ++G
Sbjct: 493 ----LKKEMSEKG 501



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 85/192 (44%), Gaps = 1/192 (0%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL 143
            A  I E +KS  +   +  T +AL   L K +   + + L+ ++  S        F  L
Sbjct: 209 GAFCIFEQMKSR-HIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTL 267

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
           +  Y T+G LE   +  ++ +Q+       S+  V+  + K GK  EAV     +I +  
Sbjct: 268 IDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDV 327

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
            PN++ Y  +I+  +  G  + A  +   +    +  +   Y +L++G     + DEA+ 
Sbjct: 328 APNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEE 387

Query: 264 LLNEMRDDGKFP 275
           L+  +R+ G  P
Sbjct: 388 LIYTLRNQGLRP 399


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 123/599 (20%), Positives = 229/599 (38%), Gaps = 95/599 (15%)

Query: 28  PFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALS 87
           P +  L   + R  L  ++RL  RS S +  +    D  L   ++ +  R    +D+A  
Sbjct: 42  PASAHLRRLIAREDLAGAVRLVERSGSCDGEAP---DVYLCTKLIRNLCRRGRTSDAA-R 97

Query: 88  IMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWY 147
           ++ A +     S +   + A  T++A   R   L      I S      +  +  L++  
Sbjct: 98  VLRAAEG----SGSPVDVFAYNTLVAGYCRYGHLDAARRLIGSMPVAPDAYTYTPLIRVL 153

Query: 148 STSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNS 207
              G +   LS  ++  +R    +  +Y +++    +     +A+    ++  +G  PN 
Sbjct: 154 CDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNI 213

Query: 208 RTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNE 267
            TY V+I  +   G++D A E+ + LP    +  +  Y  L++G    +R+D+ + L  E
Sbjct: 214 VTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAE 273

Query: 268 MRDDGKFPGRAMRVALER-MQEMGFIQGANEFLREMLPDKRIKNV--------RYYEDGS 318
           M +    P       L R     G ++ A + L +M       N            + G 
Sbjct: 274 MMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGR 333

Query: 319 DDDEDE--NDDNNSGVR---IAYGVQLKP------WLDPKALANTLDEWSPEVVSLLADA 367
            DD  +  ND  + G     I+Y   LK       W D K L N                
Sbjct: 334 VDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLN---------------- 377

Query: 368 KFVWTTRLVCKVLRHFKSP-ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVD 426
                     +++R+   P E  ++ F                   + IL + G +E   
Sbjct: 378 ----------EMVRNNCPPNEVTFNTF-------------------ICILCQKGLIEQAI 408

Query: 427 RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFKLMLLYSS 485
            LI ++   G  +   T   +++ + +    D+AL+ F   R++ C P +     + Y++
Sbjct: 409 MLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELF---RSMPCKPNT-----ITYTT 460

Query: 486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
           LL  L   +R   A  ++ EM+     P+V TF+ L+  F  +G  +   +L   + ++G
Sbjct: 461 LLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHG 520

Query: 546 VEPDAYMFKVLIQAYCKYLSNSNLM------------PDAATKELLKKSLWKEGRRKEA 592
             P+   +  L+    K  S+ + +            PD  T   +   L KE R +EA
Sbjct: 521 CTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEA 579



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 102/526 (19%), Positives = 216/526 (41%), Gaps = 44/526 (8%)

Query: 48  LAVRSNSSNSLSSLLND---RLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFS 99
           L  R   +++LS LL+D   R   P +VT+     A+      + A+++++ +++    +
Sbjct: 153 LCDRGRVADALS-LLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAK-GCT 210

Query: 100 HNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLST 159
            N  T + +   + +  R  + + L+  + S  F   +V++  L++    S   + V   
Sbjct: 211 PNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEEL 270

Query: 160 WNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219
           + E  ++  + +  ++++++  + + G    A++   Q+ + G   N+    ++I  +  
Sbjct: 271 FAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICK 330

Query: 220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-A 278
            G++D A ++ + +        +  Y  +++G    ER+D+AK LLNEM  +   P    
Sbjct: 331 QGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVT 390

Query: 279 MRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGV 338
               +  + + G I+ A   + +M        V  Y +   +        +S + +   +
Sbjct: 391 FNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTY-NALVNGFCVQGHIDSALELFRSM 449

Query: 339 QLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW-----HFF 393
             KP        NT+  ++  +  L    +      LV ++LR    P          FF
Sbjct: 450 PCKP--------NTI-TYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFF 500

Query: 394 CWVAY------------QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPF 441
           C   +            + G T ++     +L  + +    E    L+  L S G+    
Sbjct: 501 CQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDV 560

Query: 442 STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK-CKRDFDAI 500
            T   II       + + A++ FH    +   I      ++Y+ +L  L K C+ D +AI
Sbjct: 561 ITFSSIIGILSKEDRIEEAVQLFH----VVQDIGMRPKAVVYNKILLGLCKRCEID-NAI 615

Query: 501 NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           +    M+ +G +P+  T+  L+   A +G  K  Q L S++   GV
Sbjct: 616 DFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEAQDLLSVLCSRGV 661



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 12/125 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y++LL  +TK     DA+ +L  ++  G+ PDV TFS ++   + +   +   +LF 
Sbjct: 525 LITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFH 584

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEG 587
           +V+  G+ P A ++  ++   CK            Y+ ++  MP+ +T  +L + L  EG
Sbjct: 585 VVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLAHEG 644

Query: 588 RRKEA 592
             KEA
Sbjct: 645 LLKEA 649


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 158/393 (40%), Gaps = 40/393 (10%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SY  ++    + G+  EA++ F  + ++   P  RTYTV+I  L   G+   AL +F+ +
Sbjct: 266 SYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEM 325

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFI 292
                +     Y +L++G     + DEA+ +L+EM + G  P      AL +   + G I
Sbjct: 326 KEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMI 385

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
             A E L  M  +    N R Y +                 I    + +      AL N 
Sbjct: 386 DDAFEILDLMESNSCGPNTRTYNE----------------LICGLCKKRKVHKAMALLNK 429

Query: 353 LDE--WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
           + E   SP +++      +       CKV       E+A+     +  + G   D +   
Sbjct: 430 MLERKLSPSLIT------YNSLIHGQCKV----NDLESAYRLLSLMN-ENGLVPDQWTYS 478

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470
             +  L + G VE    L   +++ G++        +ID Y    K D A      +R L
Sbjct: 479 VFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLL--ERML 536

Query: 471 ---CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
              C P S       Y+ L+  L K K+  +A +++ +M+  G+ P V T++ L+     
Sbjct: 537 NDACLPNS-----YTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLK 591

Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
            G      K+F+ +   G +PD   +   + AY
Sbjct: 592 DGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAY 624



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 121/593 (20%), Positives = 221/593 (37%), Gaps = 113/593 (19%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N+ +   L   L ++ R +E   L  D++          +  L+   S SG     L+ +
Sbjct: 263 NEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLF 322

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           NE +++    +  +Y +++    K  K  EA +   ++ ++G IP+  TY  +I+     
Sbjct: 323 NEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKE 382

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP----- 275
           G +D A E+   +        ++ Y  L+ G     +  +A +LLN+M +    P     
Sbjct: 383 GMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITY 442

Query: 276 -----GRAMRVALER-------MQEMGFIQGANEFLREMLPDKRIKNVRYYEDGS--DDD 321
                G+     LE        M E G +   +++   +  D   K  R  E G+  D  
Sbjct: 443 NSLIHGQCKVNDLESAYRLLSLMNENGLV--PDQWTYSVFIDTLCKEGRVEEAGTLFDSV 500

Query: 322 EDENDDNN--------------SGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADA 367
           + +    N                + +AY + L+  L+   L N+   ++  +  L  + 
Sbjct: 501 KAKGVKANEVIYTALIDGYCKVGKIDVAYSL-LERMLNDACLPNSYT-YNVLIEGLCKEK 558

Query: 368 KFVWTTRLVCKVLRHFKSPET---------------------AWHFFCWVAYQPGYTHDV 406
           K    + LV K+L     P                        ++    + YQP    DV
Sbjct: 559 KMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQP----DV 614

Query: 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY---GISKKADAALKA 463
                 L      G +E VD +IAK+  +G+     T  ++ID Y   G++ +A   LK 
Sbjct: 615 CTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKC 674

Query: 464 FHDDRTLCGPISKFKLMLLYSSLLRTL--------TKCKRDFD----------------- 498
             D  T C P      + + S L++ L        T+ +   D                 
Sbjct: 675 MVD--TGCKPS-----LYIVSILIKNLSHENRMKETRSEIGIDSVSNVNSVDIADVWKTL 727

Query: 499 ----AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK 554
               A+ + E+M+  G   DV  +  L+  F  Q   +  Q L   +++ G+ P   ++ 
Sbjct: 728 EYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYN 787

Query: 555 VLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
            L+   CK             +  + L+P   + +LL   L+ EG  ++A AV
Sbjct: 788 SLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAV 840



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 104/253 (41%), Gaps = 10/253 (3%)

Query: 60  SLLN---DRLLDPFIVT-----HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATV 111
           +LLN   +R L P ++T     H      + +SA  ++  +  N     +Q T       
Sbjct: 425 ALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNEN-GLVPDQWTYSVFIDT 483

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L K  R  E  TL   + +       V +  L+  Y   G +++  S        A L +
Sbjct: 484 LCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPN 543

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
           + +YN+++    K  K  EA     +++  G  P   TYT++I  ++  G  D AL+VF+
Sbjct: 544 SYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFN 603

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMG 290
            +  +  +     Y   +  +      +E   ++ +M ++G  P      V ++    +G
Sbjct: 604 HMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLG 663

Query: 291 FIQGANEFLREML 303
               A +FL+ M+
Sbjct: 664 LTHRAFDFLKCMV 676



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 18/178 (10%)

Query: 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR 445
           P+TA  FF W+A +PG+ H+V++   ML IL R           A+L     ++  S I+
Sbjct: 81  PQTALSFFNWIALRPGFKHNVHSYSSMLNILIR-----------ARLLGVAEKIRISMIK 129

Query: 446 LIIDFYGISKKADAALKAFHDDRTLCGPISKFKLML-LYSSLLRTLTKCKRDFDAINVLE 504
                  +    +   K   D         KFK  L  Y+++L +L+K     +   V  
Sbjct: 130 SCCSIEDVLFVLEVFRKMNADGEF------KFKPTLRCYNTILMSLSKFLLIDEMKTVYL 183

Query: 505 EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           E++ + I P++ TF+ ++  +   G+    +   S + Q G+ PD + +  LI  +C+
Sbjct: 184 ELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCR 241


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 95/451 (21%), Positives = 183/451 (40%), Gaps = 35/451 (7%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL 143
           SAL+++  ++   +   N     A+   L K  R+ +   L  ++         V +  +
Sbjct: 235 SALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCM 294

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
           +  +  SG          E  +R    +  +YN +++ + K GK FEA E + +++  G 
Sbjct: 295 IGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGI 354

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQ---YLILVEGFVGVERFDE 260
           IPN+ TY  MI+      +LD+A ++F    LM  K  S     +  L++G+ G +R D+
Sbjct: 355 IPNTITYNSMIDGFCKQDRLDAAEDMFY---LMATKGCSPDVFTFTTLIDGYCGAKRIDD 411

Query: 261 AKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREML-----PDKRIKNVRYY 314
              LL+EM   G           +     +G +  A +  ++M+     PD  I      
Sbjct: 412 GMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPD--IVTCNTL 469

Query: 315 EDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTR 374
            DG  D+    D     + +   +Q K  +D  A ++  +   P+V++            
Sbjct: 470 LDGLCDNGKLKD----ALEMFKAMQ-KSKMDLDA-SHPFNGVEPDVLTY---------NI 514

Query: 375 LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
           L+C ++   K  E A   +  + ++ G   D      M+  L +   ++   ++   + S
Sbjct: 515 LICGLINEGKFLE-AEELYEEMPHR-GIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGS 572

Query: 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCK 494
                   T   +I+ Y  + + D  L+ F +     G        ++Y +L+    K  
Sbjct: 573 KSFSPNVVTFNTLINGYCKAGRVDDGLELFCE----MGRRGIVADAIIYITLIYGFRKVG 628

Query: 495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHF 525
               A+++ +EMI SG+ PD  T   ++  F
Sbjct: 629 NINGALDIFQEMISSGVYPDTITIRNMLTGF 659



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 106/517 (20%), Positives = 198/517 (38%), Gaps = 67/517 (12%)

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L  D+  S+ L   ++F  LM         +LV+S + +  ++       S+ I++  + 
Sbjct: 68  LFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFC 127

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
              K   A+ TF ++   G  P+  T+T ++  L    ++  AL++F  +     +    
Sbjct: 128 SCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI----CRPDVL 183

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREM 302
            +  L+ G     R  EA +LL+ M ++G  P +      ++ M +MG    A   LR+M
Sbjct: 184 TFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKM 243

Query: 303 LPDKRIK-NVRYYE---DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSP 358
                IK NV  Y    DG   D   +D +N          L   +  K +   +  ++ 
Sbjct: 244 EEISHIKPNVVIYSAIIDGLCKDGRHSDSHN----------LFIEMQDKGIFPNIVTYNC 293

Query: 359 EVVSLLADAKFVWTTRLVCKVLRHFKSPETAWH------------FF----CWVAYQP-G 401
            +       ++    RL+ ++L    SP    +            FF     +    P G
Sbjct: 294 MIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRG 353

Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL 461
              +      M+    +   ++  + +   + + G      T   +ID Y  +K+ D  +
Sbjct: 354 IIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGM 413

Query: 462 KAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           +  H+   R L      +  ++    L+  L        A+++ ++MI SG+ PD+ T +
Sbjct: 414 ELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNA------ALDLSQQMISSGVCPDIVTCN 467

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQ-----------NGVEPDAYMFKVLIQAYC---KYLS 565
            L+      G  K   ++F  +++           NGVEPD   + +LI       K+L 
Sbjct: 468 TLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLE 527

Query: 566 NSNL---------MPDAATKELLKKSLWKEGRRKEAA 593
              L         +PD  T   +   L K+ R  EA 
Sbjct: 528 AEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEAT 564



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 104/511 (20%), Positives = 167/511 (32%), Gaps = 80/511 (15%)

Query: 80  PNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
           P A S    +  L  +P+     + LH L        R  E   L   I     L     
Sbjct: 133 PFALSTFGKLTKLGLHPDVVTFTTLLHGLCL----DHRVSEALDLFHQICRPDVLT---- 184

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           F  LM      G +   ++  +   +        +Y   +    K G    A+   R++ 
Sbjct: 185 FTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKME 244

Query: 200 DEGAI-PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
           +   I PN   Y+ +I+ L   G+   +  +F  +    I      Y  ++ GF    R+
Sbjct: 245 EISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRW 304

Query: 259 DEAKSLLNEMRDDGKFPGRAMRVALER--MQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
             A+ LL EM +    P      AL    ++E  F + A E   EMLP   I N   Y  
Sbjct: 305 SAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAA-ELYDEMLPRGIIPNTITYNS 363

Query: 317 GSDD--DEDENDDNNSGVRIAYGVQLKP-------WLDPKALANTLDEWSPEVVSLLADA 367
             D    +D  D       +       P        +D    A  +D+   E++  +   
Sbjct: 364 MIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGM-ELLHEMPRR 422

Query: 368 KFVWTTRLVCKVLRHFKSPETAWHFFCWVA------------YQPGYTHDVYALEKMLTI 415
             V  T           +  T  H FC V                G   D+     +L  
Sbjct: 423 GLVANT----------VTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDG 472

Query: 416 LARHGHVELVDRLIAKLRSDGMRL----PFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           L  +G ++    +   ++   M L    PF+ +   +  Y I                +C
Sbjct: 473 LCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNI---------------LIC 517

Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
           G I++ K +                 +A  + EEM   GIVPD  T+S ++     Q   
Sbjct: 518 GLINEGKFL-----------------EAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRL 560

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
               ++F  +      P+   F  LI  YCK
Sbjct: 561 DEATQMFVSMGSKSFSPNVVTFNTLINGYCK 591


>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
           [Vitis vinifera]
          Length = 811

 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 108/518 (20%), Positives = 201/518 (38%), Gaps = 58/518 (11%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
            FS ++ T +AL  V  KS+R+ E   ++ ++  +      V + +L+  Y+  G LE  
Sbjct: 301 GFSPDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDA 360

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           L   N+  ++       +Y  ++S + K GK+  AV+ F ++ +EG  PN  T+  +I+ 
Sbjct: 361 LELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKM 420

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
             N GK    ++VF  +   +       +  L+  F       E   +  EM+  G  P 
Sbjct: 421 HGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPE 480

Query: 277 R-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIA 335
           R      +      G    A    + ML           E G + D             +
Sbjct: 481 RDTFNTLISSYSRCGSFDQAMAVYKRML-----------EAGVNPDLS-----------S 518

Query: 336 YGVQLKPWLDPKALA-NTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFC 394
           Y   L       ALA   L + S +V++ + D +        C +L  + + +      C
Sbjct: 519 YNAVL------AALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIER-MC 571

Query: 395 WVAYQ--PGYTHDVYALEKMLTILARHGHVEL-VDRLIAKLRSDGMRLPFSTIRLIIDFY 451
            +A +   G       L K L ++     + +  +R   +LR  G     +T+  ++  Y
Sbjct: 572 ALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIY 631

Query: 452 G---ISKKADAALKAFHDDRTLCGPISKFKLML-LYSSLLRTLTKCKRDFDAINVLEEMI 507
           G   +  KA+  L         C     F   L  Y+SL+   ++      +  +L E++
Sbjct: 632 GRRQMVAKANEILD--------CMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREIL 683

Query: 508 FSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK----- 562
             GI PD+ +++ ++Y +   G  +   ++ S +R++G  PD   +   I +Y       
Sbjct: 684 AKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFV 743

Query: 563 -------YLSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
                  Y+      P+ +T   +     K  RR EA+
Sbjct: 744 EAIDVVCYMIKHGCKPNQSTYNSIVDWYCKLNRRDEAS 781



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 91/219 (41%), Gaps = 18/219 (8%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D Y    +++   R    E    ++ +++  G      T   ++D YG S+++  A
Sbjct: 266 GIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSRRSKEA 325

Query: 461 LKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           ++   + +   C P      ++ Y+SL+    +     DA+ +  +M+  GI PDV T++
Sbjct: 326 MEVLQEMEGNGCPPS-----IVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYT 380

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM--------- 570
            L+  F   G +K   ++F  +R  G +P+   F  LI+ +      + +M         
Sbjct: 381 TLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTF 440

Query: 571 ---PDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
              PD  T   L     + G   E + V +  ++   VP
Sbjct: 441 QCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVP 479



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/203 (20%), Positives = 85/203 (41%), Gaps = 24/203 (11%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           + G   DV+    +L+   + G  +   ++  ++R++G +    T   +I  +G   K  
Sbjct: 369 EKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFT 428

Query: 459 AALKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
             +K F D +T  C P      ++ +++LL    +   D +   V +EM  +G VP+  T
Sbjct: 429 EMMKVFEDIKTFQCSPD-----IVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDT 483

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKE 577
           F+ L+  ++  G       ++  + + GV PD   +  ++ A                  
Sbjct: 484 FNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAA------------------ 525

Query: 578 LLKKSLWKEGRRKEAAAVEERCE 600
           L +  LWK+  +  A   + RC+
Sbjct: 526 LARGGLWKQSEKVLAEMKDGRCK 548



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 85/204 (41%), Gaps = 36/204 (17%)

Query: 391 HFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF 450
           H  C    + G+  DVYA   M+T    +G       +  K+   G +    T  +I++ 
Sbjct: 189 HNLC----KDGFDVDVYAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNV 244

Query: 451 YG------------ISKKADAALK----AFHDDRTLC----------GPISKFKLM---- 480
           YG            + +   A +      ++   + C          G + + KL     
Sbjct: 245 YGKMGMPWNKMVGLVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSP 304

Query: 481 --LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF 538
             + Y++LL    K +R  +A+ VL+EM  +G  P + T++ L+  +A  G  +   +L 
Sbjct: 305 DKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELK 364

Query: 539 SMVRQNGVEPDAYMFKVLIQAYCK 562
           + + + G++PD + +  L+  + K
Sbjct: 365 NQMVEKGIKPDVFTYTTLLSGFEK 388



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 69/173 (39%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
            FS + +TL+A+ ++  + Q   +   ++  +    F      + +LM  YS S + E  
Sbjct: 616 GFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERS 675

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
                E   +       SYN V+  Y + G+  +A     ++ + G  P+  TY   I  
Sbjct: 676 EEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIAS 735

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
                    A++V   +     K     Y  +V+ +  + R DEA   +N +R
Sbjct: 736 YAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWYCKLNRRDEASMFVNNLR 788



 Score = 43.1 bits (100), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 41/212 (19%), Positives = 86/212 (40%), Gaps = 3/212 (1%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKS--NPNFSHNQSTLHALATVLAKSQRNHELKTL 124
           LD   +   L      D+AL + E +++        N S +  + ++L K  R     +L
Sbjct: 128 LDVLGIVKGLGFYKKCDTALRVFEWVRNRKESELLLNGSIIAVIISILGKGGRVSAAASL 187

Query: 125 IGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK 184
           + ++    F      + +++  ++++G     +  + +  +     +  +YN++++VY K
Sbjct: 188 LHNLCKDGFDVDVYAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNVYGK 247

Query: 185 TGKNF-EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
            G  + + V    ++   G  P+S TY  +I         + A  V   + L        
Sbjct: 248 MGMPWNKMVGLVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKV 307

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            Y  L++ +    R  EA  +L EM  +G  P
Sbjct: 308 TYNALLDVYGKSRRSKEAMEVLQEMEGNGCPP 339



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 58/130 (44%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T + L +   +     E   ++ ++  + F    V +  L+  Y  S   +  +    E 
Sbjct: 273 TYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSRRSKEAMEVLQEM 332

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
                  S  +YN ++S YA+ G   +A+E   Q++++G  P+  TYT ++      GK 
Sbjct: 333 EGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKD 392

Query: 224 DSALEVFSAL 233
            +A+++F  +
Sbjct: 393 KAAVQIFEEM 402


>gi|356516744|ref|XP_003527053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Glycine max]
          Length = 882

 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 109/270 (40%), Gaps = 18/270 (6%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
           W P     L +  F        ++L+  +    A  FF W+  QPG+ HD +    M+ I
Sbjct: 336 WGPATEKALYNLNFSIDAYQANQILKQLQDHSVALSFFYWLKRQPGFWHDGHTYTTMVGI 395

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPI 474
           L R      +++L+ ++  DG +    T   +I  YG +     AL  F+  + + C P 
Sbjct: 396 LGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLGEALNVFNQMQEMGCEPD 455

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
                 + Y +L+    K      A+++ E M   G+ PD  T+S ++      G+    
Sbjct: 456 R-----VTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSAA 510

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKS 582
            +LF  +   G  P+   + +LI    K             + N+   PD  T  ++ + 
Sbjct: 511 HRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALKLYRDMQNAGFKPDKVTYSIVMEV 570

Query: 583 LWKEGRRKEAAAVEERCEKINDVPSLALRG 612
           L   G  +EA AV    ++ N VP   + G
Sbjct: 571 LGYCGYLEEAEAVFFEMKQNNWVPDEPVYG 600



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/248 (20%), Positives = 103/248 (41%), Gaps = 6/248 (2%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           +D +     L+   +   ALS    LK  P F H+  T   +  +L +++    +  L+ 
Sbjct: 351 IDAYQANQILKQLQDHSVALSFFYWLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLE 410

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
            +         V +  L+  Y  +  L   L+ +N+ ++        +Y  ++ ++AK G
Sbjct: 411 QMVKDGCQPNVVTYNRLIHSYGRANYLGEALNVFNQMQEMGCEPDRVTYCTLIDIHAKAG 470

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
               A+  + ++ + G  P++ TY+VMI  L   G L +A  +F  +           Y 
Sbjct: 471 FLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYN 530

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM--- 302
           IL+        +  A  L  +M++ G  P +    + +E +   G+++ A     EM   
Sbjct: 531 ILIALQAKARNYQTALKLYRDMQNAGFKPDKVTYSIVMEVLGYCGYLEEAEAVFFEMKQN 590

Query: 303 --LPDKRI 308
             +PD+ +
Sbjct: 591 NWVPDEPV 598


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 102/470 (21%), Positives = 188/470 (40%), Gaps = 56/470 (11%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN +++ + K  +  +A     ++  +   P++ TY +MI  L + GKLD AL+V + L
Sbjct: 160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL 219

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
                + T   Y IL+E  +     DEA  L++EM   G  P        +       I+
Sbjct: 220 LSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKP--------DMFTYNTIIR 271

Query: 294 GANEFLREMLPDKRIKNVRYYE-DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
           G     +E + D+  + VR  E  GS+ D            I+Y + L+  L+       
Sbjct: 272 G---MCKEGMVDRAFEMVRNLELKGSEPD-----------VISYNILLRALLNQGKWEEG 317

Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
            ++   ++ S   D   V  + L+  + R  K  E A +    +  + G T D Y+ + +
Sbjct: 318 -EKLMTKMFSEKCDPNVVTYSILITTLCRDGKI-EEAMNLL-KLMKEKGLTPDAYSYDPL 374

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLC 471
           +    R G +++    +  + SDG          ++     + KAD AL+ F       C
Sbjct: 375 IAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGC 434

Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
            P S       Y+++   L        A++++ EM+ +GI PD  T++ ++     +G  
Sbjct: 435 SPNSSS-----YNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMV 489

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELL 579
               +L   +R     P    + +++  +CK             +  +   P+  T  +L
Sbjct: 490 DEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVL 549

Query: 580 KKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAVSSADLTRVHSIY 629
            + +   G R EA       E  ND+        I A+S     R+H  +
Sbjct: 550 IEGIGFAGYRAEAM------ELANDLV------RIDAISEYSFKRLHRTF 587



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 105/252 (41%), Gaps = 48/252 (19%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
           ++P+V+      K  +T R + K +R  +  E           QP    DV+A   ++  
Sbjct: 120 YNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG--------QP----DVFAYNALING 167

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH----DDRTLC 471
             +   ++   R++ ++RS        T  ++I       K D ALK  +    D+   C
Sbjct: 168 FCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDN---C 224

Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
            P      +L+ +++L          +A+ +++EM+  G+ PD+ T++ ++     +G  
Sbjct: 225 QPTVITYTILIEATMLEGGVD-----EALKLMDEMLSRGLKPDMFTYNTIIRGMCKEG-- 277

Query: 532 KIVQKLFSMVRQ---NGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGR 588
            +V + F MVR     G EPD   + +L++A                  LL +  W+EG 
Sbjct: 278 -MVDRAFEMVRNLELKGSEPDVISYNILLRA------------------LLNQGKWEEGE 318

Query: 589 RKEAAAVEERCE 600
           +       E+C+
Sbjct: 319 KLMTKMFSEKCD 330



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 65/154 (42%), Gaps = 2/154 (1%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           VN+  ++     +G  +  L  + +  +     ++ SYN + S    +G    A+    +
Sbjct: 404 VNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILE 463

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++  G  P+  TY  MI  L   G +D A E+   +       +   Y I++ GF    R
Sbjct: 464 MMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHR 523

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGF 291
            ++A ++L  M  +G  P       L  ++ +GF
Sbjct: 524 IEDAINVLESMVGNGCRPNETTYTVL--IEGIGF 555



 Score = 42.4 bits (98), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 47/234 (20%), Positives = 101/234 (43%), Gaps = 4/234 (1%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHAL-ATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           D A  +++ ++S  +FS +  T + +  ++ ++ + +  LK L   + S       + + 
Sbjct: 175 DDATRVLDRMRSK-DFSPDTVTYNIMIGSLCSRGKLDLALKVL-NQLLSDNCQPTVITYT 232

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            L++     G ++  L   +E   R       +YN ++    K G    A E  R +  +
Sbjct: 233 ILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELK 292

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G+ P+  +Y +++  L+N GK +   ++ + +   +       Y IL+       + +EA
Sbjct: 293 GSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEA 352

Query: 262 KSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
            +LL  M++ G  P   +    +      G +  A EFL  M+ D  + ++  Y
Sbjct: 353 MNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNY 406



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/108 (22%), Positives = 48/108 (44%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+      G +E  ++     +++       SY+ +++ + + G+   A+E    
Sbjct: 334 VTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLET 393

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
           +I +G +P+   Y  ++  L   GK D ALE+F  L  +     S  Y
Sbjct: 394 MISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSY 441


>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
 gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 113/519 (21%), Positives = 213/519 (41%), Gaps = 58/519 (11%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
           NF H+ +T   L   L       E+  +I ++  S      +   +L +     G  ++V
Sbjct: 90  NFEHDLTTYMPLIRCLDDCGLFGEMWKMIQEMVRSP--TCVIGPADLSEVVKILGKAKMV 147

Query: 157 ---LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG-AIPNSRTYTV 212
              LS + + + R    +  +YN ++ +  + G + +  E + ++ +EG   P++ TY+V
Sbjct: 148 NKALSVFYQIKSRKCKPTASTYNSMILMLMQEGHHEKIHELYHEMCNEGDCFPDTMTYSV 207

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV--GVERFDEAKSLLNEMRD 270
           ++   V LG+ D A+ +F  +    +  T+K Y  L+  +   G E+   A  L+ EM+D
Sbjct: 208 LVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSGDEK---ALGLVQEMKD 264

Query: 271 DGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNN 329
            G  P       L + + + G ++ A      ML D    +V             N  N 
Sbjct: 265 KGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLIN---------NLINI 315

Query: 330 SGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETA 389
            G        LK +   ++L     + +P VV          T   V K L   K+P + 
Sbjct: 316 FGKAGRLEDALKLFDQMRSL-----KCAPNVV----------TYNTVIKALFESKAPASE 360

Query: 390 WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID 449
              +       G T   +    ++    +   VE    L+ ++   G     +    +I+
Sbjct: 361 AASWFEKMKANGVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIN 420

Query: 450 FYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS 509
             G +K+ +AA + F + +  CG  S      +Y+ +++ L KC R  +A+++  EM   
Sbjct: 421 ALGKAKRYEAANELFLELKENCGRSSA----RIYAVMIKNLGKCGRPSEAVDLFNEMKKI 476

Query: 510 GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR---QNGVEPDAYMFKVLIQAYCKY--- 563
           G  PDV  ++ LM      G   ++++ FS +R   +NG  PD     +++    +    
Sbjct: 477 GCNPDVYAYNALMSGLVRAG---MIEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRP 533

Query: 564 ---------LSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
                    + +S + PDA +   +  SL + G  +EAA
Sbjct: 534 EQATEMFMKMKDSLIKPDAVSYNTILGSLSRSGMFEEAA 572



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 103/255 (40%), Gaps = 19/255 (7%)

Query: 355 EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT 414
           +W P+    L   K     RLV +VL+          FF W   +  + HD+     ++ 
Sbjct: 44  KWGPDAEKALEVLKLKVDHRLVREVLKIDVEINVKIQFFKWAGKRRNFEHDLTTYMPLIR 103

Query: 415 ILARHGHVELVDRLIAKL-RSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CG 472
            L   G    + ++I ++ RS    +  + +  ++   G +K  + AL  F+  ++  C 
Sbjct: 104 CLDDCGLFGEMWKMIQEMVRSPTCVIGPADLSEVVKILGKAKMVNKALSVFYQIKSRKCK 163

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSG-IVPDVQTFSGLMYHFALQGDE 531
           P +       Y+S++  L +         +  EM   G   PD  T+S L+  F   G +
Sbjct: 164 PTAS-----TYNSMILMLMQEGHHEKIHELYHEMCNEGDCFPDTMTYSVLVSAFVKLGRD 218

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY-----------LSNSNLMPDAATKELLK 580
               +LF  ++ NG+ P A ++  L+  Y K            + +    P   T   L 
Sbjct: 219 DYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSGDEKALGLVQEMKDKGCAPTVFTYTELI 278

Query: 581 KSLWKEGRRKEAAAV 595
           K L K GR ++A +V
Sbjct: 279 KGLGKSGRVEDAYSV 293



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 87/214 (40%), Gaps = 7/214 (3%)

Query: 59  SSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRN 118
           SS     L+D F  T+ +      + AL ++E +     F    +   +L   L K++R 
Sbjct: 376 SSFTYSILIDGFCKTNRV------EKALLLLEEMDEK-GFPPCPAAYCSLINALGKAKRY 428

Query: 119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV 178
                L  ++  +   + +  +  +++     G     +  +NE ++        +YN +
Sbjct: 429 EAANELFLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNAL 488

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI 238
           MS   + G   EA    R + + G  P+  ++ +++  L   G+ + A E+F  +    I
Sbjct: 489 MSGLVRAGMIEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLI 548

Query: 239 KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           K  +  Y  ++        F+EA  L+ EM   G
Sbjct: 549 KPDAVSYNTILGSLSRSGMFEEAAKLMREMGSRG 582



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 41/203 (20%), Positives = 93/203 (45%), Gaps = 11/203 (5%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS- 130
           V   L  A   + ALS+   +KS        ST +++  +L +   + ++  L  ++ + 
Sbjct: 137 VVKILGKAKMVNKALSVFYQIKSR-KCKPTASTYNSMILMLMQEGHHEKIHELYHEMCNE 195

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                 ++ +  L+  +   G  +  +  ++E +      + + Y  ++++Y K+G   +
Sbjct: 196 GDCFPDTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSGDE-K 254

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A+   +++ D+G  P   TYT +I+ L   G+++ A  VF    L  +K   K  ++L+ 
Sbjct: 255 ALGLVQEMKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVF----LNMLKDGCKPDVVLIN 310

Query: 251 GFVGV----ERFDEAKSLLNEMR 269
             + +     R ++A  L ++MR
Sbjct: 311 NLINIFGKAGRLEDALKLFDQMR 333



 Score = 42.7 bits (99), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 44/215 (20%), Positives = 87/215 (40%), Gaps = 4/215 (1%)

Query: 89  MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS 148
           M +LK  PN     + + AL    A +    E  +    + ++     S  +  L+  + 
Sbjct: 332 MRSLKCAPNVVTYNTVIKALFESKAPAS---EAASWFEKMKANGVTPSSFTYSILIDGFC 388

Query: 149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSR 208
            +  +E  L    E  ++       +Y  +++   K  +   A E F ++ +     ++R
Sbjct: 389 KTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELKENCGRSSAR 448

Query: 209 TYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
            Y VMI++L   G+   A+++F+ +  +        Y  L+ G V     +EA S L  M
Sbjct: 449 IYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTM 508

Query: 269 RDDGKFPG-RAMRVALERMQEMGFIQGANEFLREM 302
            ++G  P   +  + L  +   G  + A E   +M
Sbjct: 509 EENGCTPDLNSHNIILNGLARTGRPEQATEMFMKM 543



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 19/222 (8%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G    V+   +++  L + G VE    +   +  DG +     I  +I+ +G + + + A
Sbjct: 266 GCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDA 325

Query: 461 LKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDF-DAINVLEEMIFSGIVPDVQTF 518
           LK F   R+L C P      ++ Y+++++ L + K    +A +  E+M  +G+ P   T+
Sbjct: 326 LKLFDQMRSLKCAPN-----VVTYNTVIKALFESKAPASEAASWFEKMKANGVTPSSFTY 380

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK---YLSNSNLM----- 570
           S L+  F      +    L   + + G  P    +  LI A  K   Y + + L      
Sbjct: 381 SILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELKE 440

Query: 571 ----PDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
                 A    ++ K+L K GR  EA  +    +KI   P +
Sbjct: 441 NCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDV 482


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 95/451 (21%), Positives = 183/451 (40%), Gaps = 35/451 (7%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL 143
           SAL+++  ++   +   N     A+   L K  R+ +   L  ++         V +  +
Sbjct: 235 SALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCM 294

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
           +  +  SG          E  +R    +  +YN +++ + K GK FEA E + +++  G 
Sbjct: 295 IGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGI 354

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQ---YLILVEGFVGVERFDE 260
           IPN+ TY  MI+      +LD+A ++F    LM  K  S     +  L++G+ G +R D+
Sbjct: 355 IPNTITYNSMIDGFCKQDRLDAAEDMFY---LMATKGCSPDVFTFTTLIDGYCGAKRIDD 411

Query: 261 AKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREML-----PDKRIKNVRYY 314
              LL+EM   G           +     +G +  A +  ++M+     PD  I      
Sbjct: 412 GMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPD--IVTCNTL 469

Query: 315 EDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTR 374
            DG  D+    D     + +   +Q K  +D  A ++  +   P+V++            
Sbjct: 470 LDGLCDNGKLKD----ALEMFKAMQ-KSKMDLDA-SHPFNGVEPDVLTY---------NI 514

Query: 375 LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
           L+C ++   K  E A   +  + ++ G   D      M+  L +   ++   ++   + S
Sbjct: 515 LICGLINEGKFLE-AEELYEEMPHR-GIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGS 572

Query: 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCK 494
                   T   +I+ Y  + + D  L+ F +     G        ++Y +L+    K  
Sbjct: 573 KSFSPNVVTFNTLINGYCKAGRVDDGLELFCE----MGRRGIVADAIIYITLIYGFRKVG 628

Query: 495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHF 525
               A+++ +EMI SG+ PD  T   ++  F
Sbjct: 629 NINGALDIFQEMISSGVYPDTITIRNMLTGF 659



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 106/517 (20%), Positives = 198/517 (38%), Gaps = 67/517 (12%)

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L  D+  S+ L   ++F  LM         +LV+S + +  ++       S+ I++  + 
Sbjct: 68  LFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFC 127

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
              K   A+ TF ++   G  P+  T+T ++  L    ++  AL++F  +     +    
Sbjct: 128 SCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI----CRPDVL 183

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREM 302
            +  L+ G     R  EA +LL+ M ++G  P +      ++ M +MG    A   LR+M
Sbjct: 184 TFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKM 243

Query: 303 LPDKRIK-NVRYYE---DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSP 358
                IK NV  Y    DG   D   +D +N          L   +  K +   +  ++ 
Sbjct: 244 EEISHIKPNVVIYSAIIDGLCKDGRHSDSHN----------LFIEMQDKGIFPNIVTYNC 293

Query: 359 EVVSLLADAKFVWTTRLVCKVLRHFKSPETAWH------------FF----CWVAYQP-G 401
            +       ++    RL+ ++L    SP    +            FF     +    P G
Sbjct: 294 MIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRG 353

Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL 461
              +      M+    +   ++  + +   + + G      T   +ID Y  +K+ D  +
Sbjct: 354 IIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGM 413

Query: 462 KAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           +  H+   R L      +  ++    L+  L        A+++ ++MI SG+ PD+ T +
Sbjct: 414 ELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNA------ALDLSQQMISSGVCPDIVTCN 467

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQ-----------NGVEPDAYMFKVLIQAYC---KYLS 565
            L+      G  K   ++F  +++           NGVEPD   + +LI       K+L 
Sbjct: 468 TLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLE 527

Query: 566 NSNL---------MPDAATKELLKKSLWKEGRRKEAA 593
              L         +PD  T   +   L K+ R  EA 
Sbjct: 528 AEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEAT 564



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 104/511 (20%), Positives = 167/511 (32%), Gaps = 80/511 (15%)

Query: 80  PNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
           P A S    +  L  +P+     + LH L        R  E   L   I     L     
Sbjct: 133 PFALSTFGKLTKLGLHPDVVTFTTLLHGLCL----DHRVSEALDLFHQICRPDVLT---- 184

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           F  LM      G +   ++  +   +        +Y   +    K G    A+   R++ 
Sbjct: 185 FTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKME 244

Query: 200 DEGAI-PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
           +   I PN   Y+ +I+ L   G+   +  +F  +    I      Y  ++ GF    R+
Sbjct: 245 EISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRW 304

Query: 259 DEAKSLLNEMRDDGKFPGRAMRVALER--MQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
             A+ LL EM +    P      AL    ++E  F + A E   EMLP   I N   Y  
Sbjct: 305 SAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAA-ELYDEMLPRGIIPNTITYNS 363

Query: 317 GSDD--DEDENDDNNSGVRIAYGVQLKP-------WLDPKALANTLDEWSPEVVSLLADA 367
             D    +D  D       +       P        +D    A  +D+   E++  +   
Sbjct: 364 MIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGM-ELLHEMPRR 422

Query: 368 KFVWTTRLVCKVLRHFKSPETAWHFFCWVA------------YQPGYTHDVYALEKMLTI 415
             V  T           +  T  H FC V                G   D+     +L  
Sbjct: 423 GLVANT----------VTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDG 472

Query: 416 LARHGHVELVDRLIAKLRSDGMRL----PFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           L  +G ++    +   ++   M L    PF+ +   +  Y I                +C
Sbjct: 473 LCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNI---------------LIC 517

Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
           G I++ K +                 +A  + EEM   GIVPD  T+S ++     Q   
Sbjct: 518 GLINEGKFL-----------------EAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRL 560

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
               ++F  +      P+   F  LI  YCK
Sbjct: 561 DEATQMFVSMGSKSFSPNVVTFNTLINGYCK 591


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 95/488 (19%), Positives = 198/488 (40%), Gaps = 83/488 (17%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           F +L++ Y+ SGD   +   ++  ++  ++   +++ +V   Y K     +A+E F +++
Sbjct: 67  FYSLIENYANSGDFGTLFQVFDRMKRERRVFIEKNFILVFRAYGKAHLPEKAIELFGRMV 126

Query: 200 DEGAI--------------------------------------PNSRTYTVMIEHLVNLG 221
           DE                                         PN  ++ ++I+ +  LG
Sbjct: 127 DEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLG 186

Query: 222 KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG----- 276
            +D A+EVF  + + + +     Y  L++G    +R DEA  LL+EM+ +G FP      
Sbjct: 187 LVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFN 246

Query: 277 --------RAMRVALERMQEMGFIQGA-------NEFLREMLPDKRIKNVRYYEDGSDDD 321
                   +   V + ++ +  F++G        N  +  +    ++       D     
Sbjct: 247 VLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVAS 306

Query: 322 EDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLR 381
           +   +D   G  I   V+    +D   L ++L+E            ++ ++T L+  + +
Sbjct: 307 KCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHA------NEYAYST-LISGLFK 359

Query: 382 HFKSPETA--WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
             KS E    W        QP    ++     ++  L R G ++    ++ ++ + G   
Sbjct: 360 EEKSEEAMGLWKKMVEKGCQP----NIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTP 415

Query: 440 -PFSTIRLIIDFY--GISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
             F+   LI  F+  G S+KA    K    +   C P       + YS L+  L +  + 
Sbjct: 416 NAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNN--CVPNE-----ICYSVLIHGLCEDGKL 468

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS--MVRQNGVEPDAYMFK 554
            +A+ +   M+  G+ PDV  +S +++     G  ++  KLF+  + +++  +PD   + 
Sbjct: 469 REAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYN 528

Query: 555 VLIQAYCK 562
           +L++A CK
Sbjct: 529 ILLRALCK 536



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 83/212 (39%), Gaps = 1/212 (0%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T   L   L K  R  E   L+ ++        SV F  L+      GD+  V    +  
Sbjct: 209 TYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNM 268

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
             +  + +  +YN +++     GK  +AV    +++    +PN  TY  +I  LV  G+ 
Sbjct: 269 FLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRS 328

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
              + + S+L           Y  L+ G    E+ +EA  L  +M + G  P   +  AL
Sbjct: 329 VDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSAL 388

Query: 284 -ERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
            + +   G +  A E L EM+      N   Y
Sbjct: 389 IDGLCREGKLDEAKEILCEMVNKGCTPNAFTY 420



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 89/204 (43%), Gaps = 10/204 (4%)

Query: 107 ALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR 166
           AL   L +  +  E K ++ ++ +      +  + +L++ +  +G+ +  +  W E  + 
Sbjct: 387 ALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKN 446

Query: 167 AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
             + +   Y++++    + GK  EA+  +  ++  G  P+   Y+ MI  L N G ++  
Sbjct: 447 NCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVG 506

Query: 227 LEVFSALPLMRIKRTSKQ-----YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMR 280
           L++F+    M  + +  Q     Y IL+           A  LLN M D G  P      
Sbjct: 507 LKLFNE---MLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCN 563

Query: 281 VALERMQE-MGFIQGANEFLREML 303
           + L  ++E +   Q   EFL E++
Sbjct: 564 IFLNALREKLNPPQDGREFLDELV 587



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 76/175 (43%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N+ T + +   L    +  +  +L+  + +SK +   V +  L+      G     +   
Sbjct: 276 NEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLL 335

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           +   +R    +  +Y+ ++S   K  K+ EA+  +++++++G  PN   Y+ +I+ L   
Sbjct: 336 SSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCRE 395

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           GKLD A E+   +        +  Y  L++GF       +A  +  EM  +   P
Sbjct: 396 GKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVP 450



 Score = 43.1 bits (100), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 25/122 (20%), Positives = 59/122 (48%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS+L+  L K ++  +A+ + ++M+  G  P++  +S L+     +G     +++   + 
Sbjct: 350 YSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMV 409

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
             G  P+A+ +  LI+ + K             ++ +N +P+     +L   L ++G+ +
Sbjct: 410 NKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLR 469

Query: 591 EA 592
           EA
Sbjct: 470 EA 471



 Score = 42.0 bits (97), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 16/138 (11%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y +L+  L K  R  +A+ +L+EM   G  P   TF+ L+     +GD   V KL   + 
Sbjct: 210 YCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMF 269

Query: 543 QNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRK 590
             G  P+   +  +I   C              +  S  +P+  T   L   L K+GR  
Sbjct: 270 LKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSV 329

Query: 591 EA----AAVEERCEKIND 604
           +     +++EER    N+
Sbjct: 330 DGVHLLSSLEERGHHANE 347


>gi|302806226|ref|XP_002984863.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
 gi|300147449|gb|EFJ14113.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
          Length = 564

 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 113/277 (40%), Gaps = 21/277 (7%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
           W  E V  LA          V ++L+  K    A++FF W   Q G+ HDV+    +L I
Sbjct: 17  WGDETVRALAGLNANLNAYQVNEILKQQKEAGVAYNFFIWARKQAGFKHDVHTYTTILGI 76

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPI 474
           L R    ++++ L+ ++  +G      T   +I  YG +   D++LK F+  + + C P 
Sbjct: 77  LGRAKSFDVLNNLLDEMIREGCEPNVVTYNRLIHCYGRANDLDSSLKLFNVMQMVGCEPD 136

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
                 + Y +L+    K      A+++  +M  +G  PD  T+S +++     G     
Sbjct: 137 R-----VTYCTLIDLQAKAGFHDAAMDLYRQMQHAGFRPDTFTYSIIIHCLGKAGKLNAA 191

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKS 582
            KLF  +   G  P    + ++I  + K             L      PD  T  ++ + 
Sbjct: 192 YKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAPDRVTYGIIMEV 251

Query: 583 LWKEGRRKEAAAVEERCEK---INDVPSLALRGHIWA 616
           L   G  ++A  V E  E+   + D P   L   +W 
Sbjct: 252 LGNCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWG 288



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 105/237 (44%), Gaps = 1/237 (0%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           L+ + V   L+    A  A +     +    F H+  T   +  +L +++    L  L+ 
Sbjct: 32  LNAYQVNEILKQQKEAGVAYNFFIWARKQAGFKHDVHTYTTILGILGRAKSFDVLNNLLD 91

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
           ++         V +  L+  Y  + DL+  L  +N  +         +Y  ++ + AK G
Sbjct: 92  EMIREGCEPNVVTYNRLIHCYGRANDLDSSLKLFNVMQMVGCEPDRVTYCTLIDLQAKAG 151

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
            +  A++ +RQ+   G  P++ TY+++I  L   GKL++A ++F  +       +   Y 
Sbjct: 152 FHDAAMDLYRQMQHAGFRPDTFTYSIIIHCLGKAGKLNAAYKLFCEMTDRGYAPSLVTYN 211

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
           I+++      +FD A  L +++++ G  P R    + +E +   G I+ A +   EM
Sbjct: 212 IIIDLHAKAGKFDMALKLYSDLQEVGYAPDRVTYGIIMEVLGNCGHIEDAEQVFEEM 268


>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
 gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
          Length = 638

 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 116/564 (20%), Positives = 226/564 (40%), Gaps = 79/564 (14%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           +D ++V   +++    +  +          N+ H+ ST  AL   L   ++  E+  +I 
Sbjct: 88  VDHWLVREVMKTDIGVNVKMQFFRWAAKRRNYEHDTSTYMALIRCLEVVEQYGEMWKMIQ 147

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELV---LSTWNEYRQRAKLLSTESYNIVMSVYA 183
           ++  +    V+     L +     G+ ++V   ++ + + + R    + ++YN ++ +  
Sbjct: 148 EMVRNPICVVTPT--ELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLM 205

Query: 184 KTGKNFEAVETFRQVIDEG-AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
             G+  +  E + ++  EG   P++ TY+ +I     LG+ DSA ++ + +    ++ T+
Sbjct: 206 HEGQYGKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTT 265

Query: 243 KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER-MQEMGFIQGANEFLRE 301
           K Y +L+  F  ++    A SL  EMR     P       L R + + G I  A  F  E
Sbjct: 266 KIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYE 325

Query: 302 ML-----PDKRIKN--VRYY-EDGSDDDEDENDDNNSGVR-----IAYGVQLKPWLDPKA 348
           M      PD  + N  + +  + G  DD  +       +R     + Y   +K   + K+
Sbjct: 326 MQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKS 385

Query: 349 LANTLDEWSPEVV-SLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHD 405
            A+ +  W   +  S ++ + F ++  +   CK  R                        
Sbjct: 386 RASEVPSWFERMKESGISPSSFTYSILIDGFCKTNR------------------------ 421

Query: 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465
              +EK +              L+ ++   G     +    +ID  G +K+ D A + F 
Sbjct: 422 ---MEKAMM-------------LLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQ 465

Query: 466 DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF 525
           + +  CG  S      +Y+ +++ L K  R  DAIN+ +EM   G  PDV  ++ LM   
Sbjct: 466 ELKENCGSSSA----RVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGL 521

Query: 526 ALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK---------YLSN---SNLMPDA 573
           A  G           ++++G  PD   + +++    K          LSN   S + PD 
Sbjct: 522 ARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDV 581

Query: 574 ATKELLKKSLWKEGRRKEAAAVEE 597
            +   +  +L   G  +EAA + E
Sbjct: 582 VSYNTVLGALSHAGMFEEAAKLME 605



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 97/226 (42%), Gaps = 21/226 (9%)

Query: 54  SSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLA 113
           S  S SS     L+D F  T+ +      + A+ ++E +     F    +   +L   L 
Sbjct: 400 SGISPSSFTYSILIDGFCKTNRM------EKAMMLLEEMDEK-GFPPCPAAYCSLIDALG 452

Query: 114 KSQRN-------HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR 166
           K++R         ELK   G  SS++   V +  +        +G L+  ++ ++E  + 
Sbjct: 453 KAKRYDLACELFQELKENCGS-SSARVYAVMIKHLG------KAGRLDDAINMFDEMNKL 505

Query: 167 AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
                  +YN +MS  A+TG   EA+ T R++ + G IP+  +Y +++  L   G    A
Sbjct: 506 GCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRA 565

Query: 227 LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +E+ S +    ++     Y  ++        F+EA  L+ EM   G
Sbjct: 566 MEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEMNTLG 611


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 1/233 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D+A  +   + +      N  T +AL   L K  R    + +I +     F    V +  
Sbjct: 113 DAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNT 172

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           LM      G ++  L+T+ +  +   + +  S+N +++   +  +  +A+E F ++ID  
Sbjct: 173 LMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRD 232

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             PN  TY+V+I+ L    +LD A ++   +     +     Y  LV GF    R D A 
Sbjct: 233 FHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSAL 292

Query: 263 SLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
            LL  M   G  P      V ++++ ++G +  A+E  RE++ +K   NV  Y
Sbjct: 293 GLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTY 345



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 50/95 (52%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y  ++  ++  G+   A+   R+++ +G IP+  TYTV+I+ L  +G++D A E+F  L
Sbjct: 274 AYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFREL 333

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
              +       Y  L+ G+    R DE   ++ EM
Sbjct: 334 VANKCSPNVVTYSALIGGYCRASRVDEGGKVMREM 368



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 89/219 (40%), Gaps = 5/219 (2%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+T   R+   AD AL +   +    +F  N  T   +   L KS +  E + L+  + S
Sbjct: 208 IITGLCRARRLAD-ALEVFNEMIDR-DFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVS 265

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                  V +  L+  +S +G L+  L        +  +    +Y +V+    K G+  +
Sbjct: 266 EGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDD 325

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A E FR+++     PN  TY+ +I       ++D   +V      M  +     Y  ++ 
Sbjct: 326 AHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMRE---MACRPNVVTYNTMIW 382

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEM 289
           G   V+R +EA  +  EM + G  P       L+R   M
Sbjct: 383 GLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKRALRM 421



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 1/99 (1%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           S+ +YN+++  +        A    R++  EG   N RT +++++ L   G++  ALE F
Sbjct: 24  SSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQALEHF 83

Query: 231 SA-LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
            A L L   +     Y  L+ G   + R D A  L  +M
Sbjct: 84  DASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKM 122


>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
 gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
          Length = 670

 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 91/420 (21%), Positives = 184/420 (43%), Gaps = 44/420 (10%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI---PNSRTYTVMIEHLVNLGKLDSAL 227
           + +S+N V++V  + G    A+E +  VI    +   PN  T+ ++I+ +  +G +D A+
Sbjct: 160 TGKSFNSVLNVIIQEGLFHRALEFYNHVIGAKGVSISPNVLTFNLVIKAMCKVGLVDDAI 219

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERM 286
           +VF  + + + +     Y  L++G    +R DEA SLL+EM+ DG FP      V +  +
Sbjct: 220 QVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGL 279

Query: 287 QEMGFIQGA-----NEFLREMLPDKRIKNVRYYE---DGSDDDEDENDDNNSGVR----- 333
            + G +  A     N FL+  +P++   N   +     G  +      D     +     
Sbjct: 280 CKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNV 339

Query: 334 IAYG------VQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPE 387
           + YG      V+    LD   +   ++E    V       ++V++T L+  + +  KS E
Sbjct: 340 VTYGTIINGLVKQGRALDGACVLALMEERGYCV------NEYVYST-LISGLFKEGKSQE 392

Query: 388 TAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLI 447
            A H F  +  + GY  +      ++  L R G  +    +++++ + G      T   +
Sbjct: 393 -AMHLFKEMTVK-GYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSSL 450

Query: 448 IDFYGISKKADAALKAFHDDRTLCGPISKFKLM---LLYSSLLRTLTKCKRDFDAINVLE 504
           +  +  +  +  A++ + D       ++K       + YS L+  L K  +  +A+ V  
Sbjct: 451 MKGFFEAGNSHRAVEVWKD-------MAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWT 503

Query: 505 EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG--VEPDAYMFKVLIQAYCK 562
           +M+  G  PDV  +S ++   ++ G  +   +L++ +   G   +PD   + +L+   CK
Sbjct: 504 QMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPDSQPDVVTYNILLNTLCK 563



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 16/138 (11%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y +L+  L K  R  +A+++L+EM   G  P   TF+ L+     +GD     KL   + 
Sbjct: 237 YCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMF 296

Query: 543 QNGVEPDAYMFKVLIQAYC------KYLS------NSNLMPDAATKELLKKSLWKEGRRK 590
             G  P+   +  LI   C      K +S      +S  +P+  T   +   L K+GR  
Sbjct: 297 LKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRAL 356

Query: 591 EAAAV----EERCEKIND 604
           + A V    EER   +N+
Sbjct: 357 DGACVLALMEERGYCVNE 374



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 5/244 (2%)

Query: 74  HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKF 133
           H L      + A+S+++ + S+     N  T   +   L K  R  +   ++  +    +
Sbjct: 312 HGLCLKGKLEKAISLLDRMVSSKCVP-NVVTYGTIINGLVKQGRALDGACVLALMEERGY 370

Query: 134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE 193
                 +  L+      G  +  +  + E   +   L+T  Y+ V+    + GK  +AVE
Sbjct: 371 CVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVE 430

Query: 194 TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
              ++ ++G  PN+ T + +++     G    A+EV+  +      +    Y +L+ G  
Sbjct: 431 VLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLC 490

Query: 254 GVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREML---PDKRIK 309
              +  EA  +  +M   G  P   A    +  +   G ++ A +   EML   PD +  
Sbjct: 491 KDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPDSQPD 550

Query: 310 NVRY 313
            V Y
Sbjct: 551 VVTY 554



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 45/237 (18%), Positives = 94/237 (39%), Gaps = 10/237 (4%)

Query: 65  RLLDPFIVTHA-----LRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNH 119
           R  +P + T+      L  A   D A+S+++ ++ +  F  +  T + L   L K     
Sbjct: 228 RKCEPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFP-SPVTFNVLINGLCKKGDLS 286

Query: 120 ELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM 179
               L+ ++     +   V +  L+      G LE  +S  +       + +  +Y  ++
Sbjct: 287 RAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTII 346

Query: 180 SVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIK 239
           +   K G+  +       + + G   N   Y+ +I  L   GK   A+ +F  + +   +
Sbjct: 347 NGLVKQGRALDGACVLALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYE 406

Query: 240 RTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGAN 296
             +  Y  +++G     + D+A  +L+EM + G  P      +L +    GF +  N
Sbjct: 407 LNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSSLMK----GFFEAGN 459


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 94/432 (21%), Positives = 171/432 (39%), Gaps = 42/432 (9%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN V+S + K  +   A +   ++   G +P+  TY +MI  L N  KL  AL+V   L
Sbjct: 139 AYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQL 198

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER-MQEMGFI 292
            L     T   Y IL+E  +     +EA  LL EM   G  P      A+ R M + G +
Sbjct: 199 LLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMV 258

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
           + A E +  +              G   D            I+Y + L+ +L+ +   + 
Sbjct: 259 ERAAELITSLT-----------SKGCKPD-----------VISYNILLRAFLN-QGKWDE 295

Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
            ++   E+ S   +   V  + L+  + R  +  E        V  +   T D Y+ + +
Sbjct: 296 GEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVL--KVMIEKELTPDTYSYDPL 353

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
           ++ L + G ++L   ++  + S+G          I+     +  A+ AL+ F+  R +  
Sbjct: 354 ISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGC 413

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
           P +       Y++++  L  C     A+ ++  MI  G+ PD  T++ L+      G  +
Sbjct: 414 PPNVSS----YNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVE 469

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLK 580
               L   + Q+G  P    + +++   CK             +      P+  T  LL 
Sbjct: 470 EAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLI 529

Query: 581 KSLWKEGRRKEA 592
           + +   G R EA
Sbjct: 530 EGIGFAGWRTEA 541



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 88/209 (42%), Gaps = 3/209 (1%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A+S+++ +      + +  +   L + L K  R      ++  + S+  L   VN+  
Sbjct: 329 DEAISVLKVMIEK-ELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNT 387

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           ++     +G+    L  +N+ R      +  SYN ++S     G    A+     +I +G
Sbjct: 388 ILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKG 447

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  TY  +I  L   G ++ A+ +   +     + T   Y I++ G   V R D+A 
Sbjct: 448 VDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAI 507

Query: 263 SLLNEMRDDGKFPGRAMRVALERMQEMGF 291
            +  EM + G  P     + L  ++ +GF
Sbjct: 508 GMFAEMIEKGCRPNETTYILL--IEGIGF 534



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 95/206 (46%), Gaps = 22/206 (10%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           DV+A   +++   +   +E   +++ ++++ G      T  ++I      +K   ALK  
Sbjct: 136 DVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVL 195

Query: 465 HDDRTL---CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL 521
             D+ L   C P      +L+ ++++          +A+ +LEEM+  G++PD+ T++ +
Sbjct: 196 --DQLLLDNCMPTVITYTILIEATIVEGGIN-----EAMKLLEEMLARGLLPDMYTYNAI 248

Query: 522 MYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC---KYLSNSNLM-------- 570
           +     +G  +   +L + +   G +PD   + +L++A+    K+     L+        
Sbjct: 249 IRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGC 308

Query: 571 -PDAATKELLKKSLWKEGRRKEAAAV 595
            P+  T  +L  SL + GR  EA +V
Sbjct: 309 EPNKVTYSILISSLCRFGRIDEAISV 334



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 102/239 (42%), Gaps = 9/239 (3%)

Query: 81  NADSALSIMEALKSN--PN-FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVS 137
           N + A  +ME L+S+  P+ F++N     A+ +   K  R      ++  + +  FL   
Sbjct: 118 NIEKASRVMEILESHTEPDVFAYN-----AVISGFCKVNRIEAATQVLNRMKARGFLPDI 172

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  ++        L L L   ++      + +  +Y I++      G   EA++   +
Sbjct: 173 VTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEE 232

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++  G +P+  TY  +I  +   G ++ A E+ ++L     K     Y IL+  F+   +
Sbjct: 233 MLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGK 292

Query: 258 FDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
           +DE + L+ EM   G  P +    + +  +   G I  A   L+ M+  +   +   Y+
Sbjct: 293 WDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYD 351



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 9/166 (5%)

Query: 72  VTHALRSAPNADSALSIMEALKS---NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDI 128
           +  AL    NA+ AL I   L+     PN S   + + AL +   +S+    +  +I   
Sbjct: 388 ILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMI--- 444

Query: 129 SSSKFLNV-SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
             SK ++   + + +L+      G +E  +   ++  Q     +  SYNIV+    K  +
Sbjct: 445 --SKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRR 502

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
             +A+  F ++I++G  PN  TY ++IE +   G    A+E+ ++L
Sbjct: 503 IDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSL 548



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 70/175 (40%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N+ T   L + L +  R  E  +++  +   +    + ++  L+      G L+L +   
Sbjct: 311 NKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIM 370

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           +       L    +YN +++   K G   +A+E F ++   G  PN  +Y  MI  L + 
Sbjct: 371 DYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSC 430

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           G    AL +  A+    +      Y  L+         +EA  LL++M   G  P
Sbjct: 431 GDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRP 485


>gi|357121156|ref|XP_003562287.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g01390-like [Brachypodium distachyon]
          Length = 293

 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 7/171 (4%)

Query: 68  DPFIVTHALRSAPNADSAL---SIMEALKSNP--NFSHNQSTLHALATVLAKSQRNHELK 122
           D   V   L++ P    A     +  +  +NP   F H++ T  ++  +L ++ R   + 
Sbjct: 65  DSHTVARVLKTHPPLQKAFLFFRLASSPAANPRATFRHDRYTYTSMLHLLGEAGRVPAML 124

Query: 123 TLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYR-QRAKLLST-ESYNIVMS 180
            L+ ++  ++    +  F  +M W + +GD++  +  W E R +R +   T  SY   + 
Sbjct: 125 RLLAEMLRARVDPDAATFTTVMHWLARAGDVDAAMRVWEEMRSRRGRCRPTLVSYTACVK 184

Query: 181 VYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
           +    G+  E    F +++ EG  P+  TYTV+IEHL + GK  + LE+ S
Sbjct: 185 ILFDAGRAAEGRRVFEEMVAEGLRPSCTTYTVLIEHLADAGKFKATLEIMS 235



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 98/212 (46%), Gaps = 15/212 (7%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPG------YTHDVYAL 409
           WS     LL+    +W +  V +VL+     + A+ FF  +A  P       + HD Y  
Sbjct: 49  WSEARPLLLSLPGLIWDSHTVARVLKTHPPLQKAFLFF-RLASSPAANPRATFRHDRYTY 107

Query: 410 EKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRT 469
             ML +L   G V  + RL+A++    +    +T   ++ +   +   DAA++ + + R+
Sbjct: 108 TSMLHLLGEAGRVPAMLRLLAEMLRARVDPDAATFTTVMHWLARAGDVDAAMRVWEEMRS 167

Query: 470 L---CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
               C P      ++ Y++ ++ L    R  +   V EEM+  G+ P   T++ L+ H A
Sbjct: 168 RRGRCRPT-----LVSYTACVKILFDAGRAAEGRRVFEEMVAEGLRPSCTTYTVLIEHLA 222

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
             G  K   ++ S +R  GVEPD  +  +L+Q
Sbjct: 223 DAGKFKATLEIMSNMRDAGVEPDKPLCNILVQ 254


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 102/467 (21%), Positives = 177/467 (37%), Gaps = 115/467 (24%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAI-PNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           +YN+++S Y K+G+    ++   QV+D   + P+  TY  ++  L + GKL  A+EV   
Sbjct: 129 TYNVLISGYCKSGE----IDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDR 184

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGF 291
                       Y IL+E         +A  LL+EMR+ G  P      V +  + + G 
Sbjct: 185 QLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGR 244

Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKP------WLD 345
           +  A +FL  M       NV                      I + + L+       W+D
Sbjct: 245 LDEAIKFLNNMPSYGCQPNV----------------------ITHNIILRSMCSTGRWMD 282

Query: 346 PKALANTL--DEWSPEVVSLLADAKFVWTTRLVCKVL-------RHFKSPETA-----WH 391
            + L + +     SP VV+      F+    L+ + +        H  +P +       H
Sbjct: 283 AEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLH 342

Query: 392 FFCW------------VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
            FC             +    G   D+     +LT L + G V++   ++ +L S G   
Sbjct: 343 GFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKG--- 399

Query: 440 PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDA 499
                                          C P+     ++ Y++++  L+K  +   A
Sbjct: 400 -------------------------------CSPV-----LITYNTVIDGLSKVGKTERA 423

Query: 500 INVLEEMIFSGIVPDVQTFSGLMYHFALQG--DEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           I +L+EM   G+ PD+ T+S L+   + +G  DE I  K F  +   G+ P+A  +  ++
Sbjct: 424 IKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAI--KFFHDLEGLGIRPNAITYNSIM 481

Query: 558 QAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
              CK            Y+ +    P  AT  +L + +  EG  KEA
Sbjct: 482 LGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEA 528



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 9/121 (7%)

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           LR L +     D    LE M++ G +PD+   + L+  F   G  K    +  ++ Q+G 
Sbjct: 64  LRRLVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGA 123

Query: 547 EPDAYMFKVLIQAYCK---------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
            PD   + VLI  YCK          L   N+ PD  T   + ++L   G+ K+A  V +
Sbjct: 124 VPDVITYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLD 183

Query: 598 R 598
           R
Sbjct: 184 R 184



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 10/226 (4%)

Query: 47  RLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLH 106
           ++ +   + NSLS        +P +  H        D A+  ++ + S   +  +  T +
Sbjct: 324 KMPMHGCTPNSLS-------YNPLL--HGFCKEKKMDRAIEYLDIMVSRGCYP-DIVTYN 373

Query: 107 ALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR 166
            L T L K  +      ++  +SS     V + +  ++   S  G  E  +   +E R++
Sbjct: 374 TLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRK 433

Query: 167 AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
                  +Y+ ++S  ++ GK  EA++ F  +   G  PN+ TY  ++  L    + D A
Sbjct: 434 GLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRA 493

Query: 227 LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           ++  + +   R K T   Y IL+EG        EA  LLNE+   G
Sbjct: 494 IDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRG 539



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 88/218 (40%), Gaps = 20/218 (9%)

Query: 387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
           E  + F   + Y+ G   D+     ++    R G  +    ++  L   G      T  +
Sbjct: 74  EDGFKFLESMVYR-GDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNV 132

Query: 447 IIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
           +I  Y  S + D AL+    DR    P      ++ Y+++LRTL    +   A+ VL+  
Sbjct: 133 LISGYCKSGEIDNALQVL--DRMNVAPD-----VVTYNTILRTLCDSGKLKQAMEVLDRQ 185

Query: 507 IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC----- 561
           +     PDV T++ L+     +       KL   +R  G +PD   + VLI   C     
Sbjct: 186 LQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRL 245

Query: 562 ----KYLSNS---NLMPDAATKELLKKSLWKEGRRKEA 592
               K+L+N       P+  T  ++ +S+   GR  +A
Sbjct: 246 DEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDA 283



 Score = 46.2 bits (108), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 28/138 (20%), Positives = 64/138 (46%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  +++    SG L+  +   +   Q+       +Y I++    K     +A++   +
Sbjct: 160 VTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDE 219

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + ++G+ P+  TY V+I  +   G+LD A++  + +P    +     + I++       R
Sbjct: 220 MRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGR 279

Query: 258 FDEAKSLLNEMRDDGKFP 275
           + +A+ LL++M   G  P
Sbjct: 280 WMDAEKLLSDMLRKGCSP 297



 Score = 43.9 bits (102), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 73/173 (42%), Gaps = 1/173 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+      G +++ +   N+   +       +YN V+   +K GK   A++   +
Sbjct: 370 VTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDE 429

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +  +G  P+  TY+ ++  L   GK+D A++ F  L  + I+  +  Y  ++ G     +
Sbjct: 430 MRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQ 489

Query: 258 FDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIK 309
            D A   L  M      P  A   + +E +   G  + A + L E+     +K
Sbjct: 490 TDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVK 542


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 96/227 (42%), Gaps = 21/227 (9%)

Query: 70  FIVTHALRSAPNADSALSIMEALKSNPNFS-----H----NQSTLHAL------------ 108
           F     L   PNA +  ++M+ L    N S     H    N S+L+ +            
Sbjct: 189 FTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSII 248

Query: 109 ATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAK 168
              L K +R  E + L  ++         +++ +L+  +   G  E     +NE   +  
Sbjct: 249 IDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGV 308

Query: 169 LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALE 228
             +  ++N+++ V  K GK  EA +    +I  G +PN  TY  +IE    +G L+SA E
Sbjct: 309 QPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARE 368

Query: 229 VFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +F ++P    +     Y +L+ G+    + +EA  L N M   GK P
Sbjct: 369 LFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRP 415



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           ++ L+  L K  +  +A ++LE MI  GIVP++ T++ L+  F L GD    ++LF  + 
Sbjct: 315 FNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMP 374

Query: 543 QNGVEPDAYMFKVLIQAYCKY--------LSNSNLM----PDAATKELLKKSLWKEGRRK 590
             G EPD   + VLI  YCK         L N  L     PD  T   L   L++ G+  
Sbjct: 375 SKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVG 434

Query: 591 EA 592
           +A
Sbjct: 435 DA 436



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 46/80 (57%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS ++  L K +R+ +A ++ EEM   G+ P V +++ L++ F   G  +  ++LF+ + 
Sbjct: 245 YSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMV 304

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
             GV+P+   F VLI   CK
Sbjct: 305 NQGVQPNVVTFNVLIDVLCK 324



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 92/227 (40%), Gaps = 6/227 (2%)

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
           N     N  T + L  VL K  +  E K L+  +     +   + + +L++ +   GDL 
Sbjct: 305 NQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLN 364

Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
                +     +        Y ++++ Y KT K  EA++ +  ++  G  P+ +TY  ++
Sbjct: 365 SARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALL 424

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD-DGK 273
             L   GK+  A ++F  + +  I      Y I + G        EA  L N+++  + K
Sbjct: 425 TGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIK 484

Query: 274 FPGRAMRVALERMQEMGFIQGANEFL-----REMLPDKRIKNVRYYE 315
                    ++ + + G ++ A E        E+ PD    N+  +E
Sbjct: 485 LDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHE 531



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 77/406 (18%), Positives = 143/406 (35%), Gaps = 56/406 (13%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           S+  ++S  AK     +    + Q+   G  P+  T  +++  L N+ ++   L V + +
Sbjct: 98  SFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGI 157

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER-MQEMGFI 292
                      Y  L++G     R  +A  L   M+  G  P       L + +   G I
Sbjct: 158 LRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNI 217

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKAL--- 349
             A +  +EML D  +                           YG+  KP +   ++   
Sbjct: 218 SIALKLHQEMLNDSSL---------------------------YGINFKPVVISYSIIID 250

Query: 350 ANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVA------------ 397
           A   D    E   L  + K    T  V        S  +  H FC               
Sbjct: 251 ALCKDRREDEARDLFEEMKVQGMTPTV-------ISYTSLIHGFCCGGKWEEAKRLFNEM 303

Query: 398 YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA 457
              G   +V     ++ +L + G V     L+  +   G+     T   +I+ + +    
Sbjct: 304 VNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDL 363

Query: 458 DAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
           ++A + F       C P      ++ Y+ L+    K  +  +A+ +   M+  G  PDV+
Sbjct: 364 NSARELFVSMPSKGCEPD-----VICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVK 418

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           T+  L+      G     +KLF +++  G+  D Y++ + +   CK
Sbjct: 419 TYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCK 464



 Score = 45.8 bits (107), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 50/111 (45%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           Y I ++   K G  FEA+E F ++       +   +  +I+ L   GKL++A E+F  LP
Sbjct: 455 YGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLP 514

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER 285
              ++     Y I++  F    +  +A  L  +M  +G  P +     L R
Sbjct: 515 QEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIR 565


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 111/486 (22%), Positives = 187/486 (38%), Gaps = 74/486 (15%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT---LIGDISSSKFLNVSVNF 140
           S + ++E++ S       +  +    T++    R H+++T   ++ ++SS         F
Sbjct: 160 SKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTF 219

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
             LMQ +   G +E  L       +     +  + N++++ Y K G+  +A+   +Q I 
Sbjct: 220 TTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIA 279

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
           +G  P+  TY   +  L     +  AL+V   +           Y I+V       + +E
Sbjct: 280 DGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 339

Query: 261 AKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDD 320
           AK +LN+M D G                              LPD    N          
Sbjct: 340 AKGILNQMVDRG-----------------------------CLPDITTFNTLI------- 363

Query: 321 DEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVL 380
                        +  G +L+  LD  A   T+   SP+V +      F      +CKV 
Sbjct: 364 -----------AALCTGNRLEEALD-LARQVTVKGVSPDVYT------FNILINALCKV- 404

Query: 381 RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP 440
                P  A   F  +    G T D      ++  L   G +     L+  + S G   P
Sbjct: 405 ---GDPHLALRLFEEMK-NSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG--CP 458

Query: 441 FSTI--RLIIDFYGISKKA--DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
            STI    IID  G+ KK   + A + F D   L G IS+  +   +++L+  L K K+ 
Sbjct: 459 RSTITYNTIID--GLCKKMRIEEAEEVF-DQMDLQG-ISRNAIT--FNTLIDGLCKDKKI 512

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
            DA  ++ +MI  G+ P+  T++ ++ H+  QGD K    +   +  NG E D   +  L
Sbjct: 513 DDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTL 572

Query: 557 IQAYCK 562
           I   CK
Sbjct: 573 INGLCK 578



 Score = 43.5 bits (101), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 4/182 (2%)

Query: 380 LRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
           LR    P+ A         +  +       E+++  L   G ++L+  L+A++R +G ++
Sbjct: 48  LREQPDPDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQV 107

Query: 440 PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFD 498
               +   +D Y   +  D A+    +      P+   +   ++Y+ LL  L +  +   
Sbjct: 108 KLGVVHSFLDSYEGQQLFDDAVDLILNQLQ---PLFGIQADTVVYNHLLNVLVEGSKMKL 164

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
             +V  EM   GI PDV TF+ LM         +    +   +   GV PD   F  L+Q
Sbjct: 165 LESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQ 224

Query: 559 AY 560
            +
Sbjct: 225 GF 226


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 89/447 (19%), Positives = 183/447 (40%), Gaps = 37/447 (8%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y  V+    K      A   F+ +ID+G  PN+ TYT +I   +++GK    +++   +
Sbjct: 204 TYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEM 263

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFI 292
               ++     Y +L++      R  EA+++ + +   G  P   +  + L      G +
Sbjct: 264 STHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSL 323

Query: 293 QGANEFLREML-----PDKRIKNVRYYEDGSDDDEDENDDNNSGVR--------IAYGVQ 339
              + FL  M+     PD  I N+ +         DE       +R        + YG  
Sbjct: 324 SEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGAL 383

Query: 340 LKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVA 397
           +        + + + +++  +   +    FV+++ +  +C V +  K+ E  +       
Sbjct: 384 IDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVL---- 439

Query: 398 YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA 457
              G   D      ++  L R G V    RLI  +   G+R    +   ++D + ++ + 
Sbjct: 440 -DQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRI 498

Query: 458 DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
           D A K    D  +   +   K+   Y++LL    K +R  DA ++  EM+  G+ PDV T
Sbjct: 499 DEAAKLL--DVIVSIGLKPDKVT--YNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVT 554

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLS 565
           ++ +++     G     ++L+  +  +  + + Y + ++I   CK             L 
Sbjct: 555 YNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLC 614

Query: 566 NSNLMPDAATKELLKKSLWKEGRRKEA 592
           + +L  D  T  ++  +L K GR+++A
Sbjct: 615 SKDLQLDIFTANIMIGALLKGGRKEDA 641



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 108/481 (22%), Positives = 194/481 (40%), Gaps = 62/481 (12%)

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
           NV++ +  L+  Y+T G L  + S  +             +NI+   YAK     EA+  
Sbjct: 306 NVTI-YGILLHGYATEGSLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHI 364

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
           F ++  +   PN  TY  +I+ L  LG++D A+  F+ +    +      +  LV G   
Sbjct: 365 FDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCT 424

Query: 255 VERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRY 313
           V+++++A+ L  E+ D G +         +  +   G +  A   +  ML          
Sbjct: 425 VDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLML---------- 474

Query: 314 YEDGSDDDEDENDDNNSGVR---IAYGVQLKPWLDPKALANTLDEWSP---EVVSL-LAD 366
                            GVR   I+Y       +D   L   +DE +     +VS+ L  
Sbjct: 475 ---------------RVGVRPDVISY----NTLVDGHCLTGRIDEAAKLLDVIVSIGLKP 515

Query: 367 AKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVEL 424
            K  + T L   CK  R     + A+  F  +  + G T DV     +L  L + G    
Sbjct: 516 DKVTYNTLLHGYCKARR----IDDAYSLFREMLMK-GLTPDVVTYNTILHGLFQTGRFSE 570

Query: 425 VDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS 484
              L   + +   ++   T  +II+    +   D A K FH   +LC    +  +    +
Sbjct: 571 AKELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFH---SLCSKDLQLDI-FTAN 626

Query: 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544
            ++  L K  R  DA+++   +   G+VPDV+T+  +  +   +G  + + +LFS + +N
Sbjct: 627 IMIGALLKGGRKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELDELFSAMEEN 686

Query: 545 GVEPDAYMFKVLIQ------------AYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           G  P++ M   L++            AY   L   N   +A+T  +L  S++  G  ++ 
Sbjct: 687 GTAPNSRMLNALVRWLLHRGDINRAGAYLSKLDEKNFSLEASTTSML-ISIYSRGEYQQL 745

Query: 593 A 593
           A
Sbjct: 746 A 746



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 78/393 (19%), Positives = 140/393 (35%), Gaps = 70/393 (17%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEG---AIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           SY+I++  +    +  EA+E    + D+G     PN  TYT +I+ L     +D A  VF
Sbjct: 166 SYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVF 225

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMG 290
             +    ++  +  Y  L+ G++ + ++ E   +L EM   G  P               
Sbjct: 226 QHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQP--------------- 270

Query: 291 FIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALA 350
                + ++  +L D   KN R  E  +  D          V I YG+ L  +    +L+
Sbjct: 271 -----DCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTI-YGILLHGYATEGSLS 324

Query: 351 NTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
                                                   H F  +    G + D +   
Sbjct: 325 E--------------------------------------MHSFLDLMVGNGVSPDHHIFN 346

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD--DR 468
            M    A+   ++    +  K+R   +     T   +ID      + D A+  F+   D 
Sbjct: 347 IMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQMIDE 406

Query: 469 TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
            +   I       ++SSL+  L    +   A  +  E++  GI  D   F+ LM +   +
Sbjct: 407 GMTPDI------FVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCRE 460

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           G     Q+L  ++ + GV PD   +  L+  +C
Sbjct: 461 GRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHC 493



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 69/143 (48%), Gaps = 7/143 (4%)

Query: 423 ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH---DDRTLCGPISKFKL 479
           E  D L+ ++   G      +  +++  +   K+A+ AL+      DD    G  S    
Sbjct: 146 EATDILLRRMPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADD----GDGSHTPN 201

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y++++  L K +    A  V + MI  G+ P+  T++ L++ +   G  K V ++  
Sbjct: 202 VVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQ 261

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK 562
            +  +G++PD Y++ VL+   CK
Sbjct: 262 EMSTHGLQPDCYIYAVLLDYLCK 284



 Score = 42.4 bits (98), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 80/180 (44%), Gaps = 4/180 (2%)

Query: 96  PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLEL 155
           PN +     LH  AT  + S+ +  L  ++G+  S      ++ F      Y+    ++ 
Sbjct: 305 PNVTIYGILLHGYATEGSLSEMHSFLDLMVGNGVSPDHHIFNIMFC----AYAKKAMIDE 360

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
            +  +++ RQ+    +  +Y  ++    K G+  +AV  F Q+IDEG  P+   ++ ++ 
Sbjct: 361 AMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVY 420

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            L  + K + A E+F  +    I+  +  +  L+       R  EA+ L++ M   G  P
Sbjct: 421 GLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRP 480


>gi|77556780|gb|ABA99576.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 696

 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 97/439 (22%), Positives = 178/439 (40%), Gaps = 50/439 (11%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN ++    + G   EAV   RQ+  EG  PN  TYT++++   N G+++ A  +   +
Sbjct: 225 TYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKM 284

Query: 234 PLMRIKRTSKQYLILVEG-FVGVERFDEAKSLLNE-MRDDGKFPGRAMRVALERMQEMGF 291
               +  +   Y  LV G F  +ER D+A  +L++ +  +      A    L  + +   
Sbjct: 285 KEKGVAPSEATYRTLVHGVFRCLER-DKAYRMLSDWLGHETSLHPSACHTMLYCLSKKDM 343

Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALAN 351
            + A EF      +KR+    Y  D            ++   I     LK  L+   L  
Sbjct: 344 AKEAVEF------EKRMSARGYLLD------------STAFGIVMSCALK-CLEVSDLCE 384

Query: 352 TLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEK 411
            LD +     +   D        +V K L + K+   A H+   +  + G    V +   
Sbjct: 385 LLDSFIKNGGNPGFDVYI-----MVIKSLLNCKNFSKANHYLGHMVLK-GLLSSVMSYNM 438

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           ++    + G V+  + ++ +++  G      T   +I  Y       + L   H+ + + 
Sbjct: 439 VIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGY-------SKLGNVHNAKVVL 491

Query: 472 GPISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
             + +   M   + ++SL+  L    +  DA    EEM   G+ P+ QT++ LM+     
Sbjct: 492 KMLMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSA 551

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATK 576
           G       L + ++ +GV PDAY F  LI ++C+             +    ++PD+ T 
Sbjct: 552 GHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTY 611

Query: 577 ELLKKSLWKEGRRKEAAAV 595
             L K+L  E R  +A  +
Sbjct: 612 NSLIKALCDERRVNKAKEI 630



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 83/182 (45%), Gaps = 4/182 (2%)

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
            NP F      + +L      S+ NH L    G +     L+  +++  ++  +  +G +
Sbjct: 394 GNPGFDVYIMVIKSLLNCKNFSKANHYL----GHMVLKGLLSSVMSYNMVIDCFVKAGAV 449

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           +       E + +  L +  ++N ++S Y+K G    A    + +++ G +P+  T+T +
Sbjct: 450 DKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMPDIITFTSL 509

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           I+ L N  +LD A   F  +    ++  ++ Y +L+         ++A  LLN+M+ DG 
Sbjct: 510 IDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGV 569

Query: 274 FP 275
            P
Sbjct: 570 TP 571



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 53/108 (49%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           ST  YN +++   + G    A   F+Q+  +G  P+  TY  ++  +   G +D A+ + 
Sbjct: 187 STAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDHFTYNSLVHGVCRRGIVDEAVRLV 246

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA 278
             +    I+     Y +LV+GF    R +EA  +L++M++ G  P  A
Sbjct: 247 RQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEA 294



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/209 (19%), Positives = 95/209 (45%), Gaps = 8/209 (3%)

Query: 58  LSSLLN-DRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQ 116
           LSS+++ + ++D F+   A+      D A  I++ ++ +  F  N  T + L +  +K  
Sbjct: 430 LSSVMSYNMVIDCFVKAGAV------DKAEEIVKEMQ-DKGFLPNLVTFNTLISGYSKLG 482

Query: 117 RNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYN 176
             H  K ++  +    F+   + F +L+     +  L+     + E  +     + ++YN
Sbjct: 483 NVHNAKVVLKMLMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYN 542

Query: 177 IVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM 236
           ++M      G   +A++   ++  +G  P++ ++  +I     + K+D A ++F+ +   
Sbjct: 543 VLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRF 602

Query: 237 RIKRTSKQYLILVEGFVGVERFDEAKSLL 265
            +   S  Y  L++      R ++AK +L
Sbjct: 603 GVVPDSYTYNSLIKALCDERRVNKAKEIL 631



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 95/234 (40%), Gaps = 29/234 (12%)

Query: 345 DPKALANTL--DEWSPEVVSLLADAKFVWTTRLVCKVLR------HFKSPETAWHFFCWV 396
           DP   A+ L  D+W P + +  A A      R V + LR          P      + W 
Sbjct: 48  DPARAASILAEDDWFPRLNAEFAAALPRLGPRFVVRALRAAAEREGLGEPLLCVRLYVWA 107

Query: 397 A-YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455
           + +   +  D      ++  L R G V L  RL+A++R  G  +    +  +++ +G   
Sbjct: 108 SRFGAHFARDGGVRRALVGALWRRGPVVLSGRLVAEVRGCGCEVSEELVCALVESWGRLG 167

Query: 456 KADAALKAFHDDRTLCGPISKFKLML-----LYSSLLRTLTKCKRDFDAINVLEEMIFSG 510
            A  A + F         +   +L L     +Y++L+    +      A    ++M   G
Sbjct: 168 LARYAHEVF---------VQMPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPADG 218

Query: 511 IVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ---NGVEPDAYMFKVLIQAYC 561
             PD  T++ L++    +G   IV +   +VRQ    G+ P+ + + +L+  +C
Sbjct: 219 CRPDHFTYNSLVHGVCRRG---IVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFC 269



 Score = 46.2 bits (108), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 46/228 (20%), Positives = 101/228 (44%), Gaps = 24/228 (10%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSH-NQSTLHALATVLAKSQRNHEL--- 121
           LLD FI        P  D  + ++++L +  NFS  N    H +   L  S  ++ +   
Sbjct: 385 LLDSFIKNGG---NPGFDVYIMVIKSLLNCKNFSKANHYLGHMVLKGLLSSVMSYNMVID 441

Query: 122 -----------KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL---ELVLSTWNEYRQRA 167
                      + ++ ++    FL   V F  L+  YS  G++   ++VL    E+    
Sbjct: 442 CFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMP 501

Query: 168 KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227
            +++   +  ++     T +  +A   F ++ + G  PN++TY V++  L + G ++ A+
Sbjct: 502 DIIT---FTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAI 558

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           ++ + + +  +   +  +  L+  F  + + D+A+ + N+M   G  P
Sbjct: 559 DLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVP 606


>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 864

 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 107/474 (22%), Positives = 194/474 (40%), Gaps = 73/474 (15%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SY+I++    + G+  EA     Q+ ++G  P++RTYTV+I+ L + G +D A  +F  +
Sbjct: 268 SYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEM 327

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFI 292
                K     Y +L++G     + +EA  +  +M  DG FP      AL     + G +
Sbjct: 328 IARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGRV 387

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
             A E L  M       NVR +          N+      R+      KP+     L   
Sbjct: 388 VPAFELLTVMEKRACKPNVRTF----------NELMEGLCRVG-----KPYKAVHLLKRM 432

Query: 353 LDE-WSPEVVS--LLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYAL 409
           LD   SP++VS  +L D         +C+            H    VAY+   + + + L
Sbjct: 433 LDNGLSPDIVSYNVLIDG--------LCR----------EGHM--NVAYKLLTSMNSFDL 472

Query: 410 E-------KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID-FYGISKKADA-- 459
           E        ++    + G  ++    +  +   G+ L   T   +ID    + K  DA  
Sbjct: 473 EPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALF 532

Query: 460 ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
            L+     R L  P S        + +L  L+K  +  + + +L ++   G+VP V T++
Sbjct: 533 ILETLVKMRMLTTPHS-------LNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYT 585

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNS 567
            L+      GD     ++  +++ +G  P+ Y + ++I   C++            + +S
Sbjct: 586 TLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDS 645

Query: 568 NLMPDAATKELLKKSLWKEGRRKEAA----AVEERCEKIND-VPSLALRGHIWA 616
            + P+  T  ++ K     G+   A     A+ ER  ++ND + S  LRG + +
Sbjct: 646 GVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLRGFVLS 699



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 1/169 (0%)

Query: 85  ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
           AL I+E L      +   S L+ +  +L+K  +  E   ++G I+    +   V +  L+
Sbjct: 530 ALFILETLVKMRMLTTPHS-LNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLV 588

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204
                SGD+          +    L +   Y I+++   + G+  EA +    + D G  
Sbjct: 589 DGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVS 648

Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
           PN  TYTVM++  VN GKLD ALE   A+     +   + Y  L+ GFV
Sbjct: 649 PNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLRGFV 697



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 1/111 (0%)

Query: 166 RAKLLST-ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
           + ++L+T  S N+++ + +K  K  E +    ++   G +P+  TYT +++ L+  G + 
Sbjct: 539 KMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDIS 598

Query: 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            +  +   + L         Y I++ G     R +EA+ LL+ M+D G  P
Sbjct: 599 GSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSP 649



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 85/213 (39%), Gaps = 3/213 (1%)

Query: 66  LLDPFIVTHALRS---APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELK 122
           LLD  IVT  L       N   AL + + +      + N  +   L   L +  R  E  
Sbjct: 227 LLDSHIVTSLLLGFCRGLNLRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAF 286

Query: 123 TLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVY 182
            L   +        +  +  L++     G ++   + ++E   R    +  +Y +++   
Sbjct: 287 GLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGL 346

Query: 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
            + GK  EA    R+++ +G  P+  TY  +I      G++  A E+ + +     K   
Sbjct: 347 CRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNV 406

Query: 243 KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           + +  L+EG   V +  +A  LL  M D+G  P
Sbjct: 407 RTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSP 439



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/135 (19%), Positives = 60/135 (44%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + +  L+  Y   G +           +RA   +  ++N +M    + GK ++AV   ++
Sbjct: 372 ITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKR 431

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++D G  P+  +Y V+I+ L   G ++ A ++ +++    ++     +  ++  F    +
Sbjct: 432 MLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGK 491

Query: 258 FDEAKSLLNEMRDDG 272
            D A + L  M   G
Sbjct: 492 ADVASAFLGLMLRKG 506



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 91/488 (18%), Positives = 179/488 (36%), Gaps = 81/488 (16%)

Query: 86  LSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQ 145
           L++ME     PN       +  L  V    +  H LK ++ +  S   ++ +V    L+ 
Sbjct: 394 LTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNV----LID 449

Query: 146 WYSTSGDLEL---VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
                G + +   +L++ N +      L+   +  +++ + K GK   A      ++ +G
Sbjct: 450 GLCREGHMNVAYKLLTSMNSFDLEPDCLT---FTAIINAFCKQGKADVASAFLGLMLRKG 506

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
              +  T T +I+ + N+GK   AL +   L  MR+  T     ++++      +  E  
Sbjct: 507 ISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSKGCKLKEEL 566

Query: 263 SLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYY------- 314
           ++L ++   G  P       L + +   G I G+   L  M     + NV  Y       
Sbjct: 567 AMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGL 626

Query: 315 -EDGSDDDEDE-----NDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAK 368
            + G  ++ ++      D   S   + Y V +K +++   L   L     E V  + +  
Sbjct: 627 CQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRAL-----ETVRAMVERG 681

Query: 369 FVWTTRLVCKVLRHF---------KSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH 419
           +    R+   +LR F           PE        V    G T  +     ++T L + 
Sbjct: 682 YELNDRIYSSLLRGFVLSQKGIRETDPECIKELISVVEQLGGSTSGLCIF--LVTRLCKE 739

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL 479
           G  +  + L+  +   G+ L    I +I++ Y   KK                       
Sbjct: 740 GRTDESNGLVQTILKSGVFLE-KAIDIIMESYCSKKKH---------------------- 776

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD-EKIVQKLF 538
                      TKC      + ++  ++ SG VP  ++F  ++     +GD E+  + + 
Sbjct: 777 -----------TKC------VELITLVLKSGFVPSFKSFCLVIQGLKKEGDTERARELVM 819

Query: 539 SMVRQNGV 546
            ++  NGV
Sbjct: 820 ELLTSNGV 827


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/486 (22%), Positives = 187/486 (38%), Gaps = 74/486 (15%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT---LIGDISSSKFLNVSVNF 140
           S + ++E++ S       +  +    T++    R H+++T   ++ ++SS         F
Sbjct: 160 SKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTF 219

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
             LMQ +   G +E  L       +     +  + N++++ Y K G+  +A+   +Q I 
Sbjct: 220 TTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIA 279

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
           +G  P+  TY   +  L     +  AL+V   +           Y I+V       + +E
Sbjct: 280 DGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 339

Query: 261 AKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDD 320
           AK +LN+M D G                              LPD    N          
Sbjct: 340 AKGILNQMVDRG-----------------------------CLPDITTFNTLI------- 363

Query: 321 DEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVL 380
                        +  G +L+  LD  A   T+   SP+V +      F      +CKV 
Sbjct: 364 -----------AALCTGNRLEEALD-LARQVTVKGVSPDVYT------FNILINALCKV- 404

Query: 381 RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP 440
                P  A   F  +    G T D      ++  L   G +     L+  + S G   P
Sbjct: 405 ---GDPHLALRLFEEMK-NSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG--CP 458

Query: 441 FSTI--RLIIDFYGISKKA--DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
            STI    IID  G+ KK   + A + F D   L G IS+  +   +++L+  L K K+ 
Sbjct: 459 RSTITYNTIID--GLCKKMRIEEAEEVF-DQMDLQG-ISRNAIT--FNTLIDGLCKDKKI 512

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
            DA  ++ +MI  G+ P+  T++ ++ H+  QGD K    +   +  NG E D   +  L
Sbjct: 513 DDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTL 572

Query: 557 IQAYCK 562
           I   CK
Sbjct: 573 INGLCK 578



 Score = 45.8 bits (107), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 48/233 (20%), Positives = 93/233 (39%), Gaps = 2/233 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+ +AL    +   AL + E +K N   + ++ T + L   L    +  +   L+ D+ S
Sbjct: 396 ILINALCKVGDPHLALRLFEEMK-NSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMES 454

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           +     ++ +  ++        +E     +++   +    +  ++N ++    K  K  +
Sbjct: 455 TGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDD 514

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A E   Q+I EG  PN+ TY  ++ H    G +  A ++   +     +     Y  L+ 
Sbjct: 515 AFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLIN 574

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREM 302
           G     R   A  +L  MR  G  P  +A    L+ +     I+ A    REM
Sbjct: 575 GLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREM 627



 Score = 43.9 bits (102), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 4/182 (2%)

Query: 380 LRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
           LR    P+ A         +  +       E+++  L   G ++L+  L+A++R +G ++
Sbjct: 48  LREQPDPDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQV 107

Query: 440 PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFD 498
               +   +D Y   +  D A+    +      P+   +   ++Y+ LL  L +  +   
Sbjct: 108 KLGVVHSFLDSYEGQQLFDDAVDLILNQLQ---PLFGIQADTVVYNHLLNVLVEGSKMKL 164

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
             +V  EM   GI PDV TF+ LM         +    +   +   GV PD   F  L+Q
Sbjct: 165 LESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQ 224

Query: 559 AY 560
            +
Sbjct: 225 GF 226


>gi|302808451|ref|XP_002985920.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
 gi|300146427|gb|EFJ13097.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
          Length = 574

 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 112/277 (40%), Gaps = 21/277 (7%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
           W  E V  LA          V ++L+  K    A++FF W   Q G+ HDV+    +L I
Sbjct: 17  WGDETVRALAGLNASLNAYQVNEILKQQKEAGVAYNFFIWARKQAGFKHDVHTYTTILGI 76

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPI 474
           L R    ++++ L+ ++  +G      T   +I  YG +   D++LK F+  + + C P 
Sbjct: 77  LGRAKSFDVLNNLLDEMIREGCEPNVVTYNRLIHCYGRANDLDSSLKLFNVMQMVGCEPD 136

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
                 + Y +L+    K      A+ +  +M  +G  PD  T+S +++     G     
Sbjct: 137 R-----VTYCTLIDLQAKAGFHDAAMELYRQMQHAGFRPDTFTYSIIIHCLGKAGKLNAA 191

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKS 582
            KLF  +   G  P    + ++I  + K             L      PD  T  ++ + 
Sbjct: 192 YKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAPDRVTYGIIMEV 251

Query: 583 LWKEGRRKEAAAVEERCEK---INDVPSLALRGHIWA 616
           L   G  ++A  V E  E+   + D P   L   +W 
Sbjct: 252 LGNCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWG 288



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 105/237 (44%), Gaps = 1/237 (0%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           L+ + V   L+    A  A +     +    F H+  T   +  +L +++    L  L+ 
Sbjct: 32  LNAYQVNEILKQQKEAGVAYNFFIWARKQAGFKHDVHTYTTILGILGRAKSFDVLNNLLD 91

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
           ++         V +  L+  Y  + DL+  L  +N  +         +Y  ++ + AK G
Sbjct: 92  EMIREGCEPNVVTYNRLIHCYGRANDLDSSLKLFNVMQMVGCEPDRVTYCTLIDLQAKAG 151

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
            +  A+E +RQ+   G  P++ TY+++I  L   GKL++A ++F  +       +   Y 
Sbjct: 152 FHDAAMELYRQMQHAGFRPDTFTYSIIIHCLGKAGKLNAAYKLFCEMTDRGYAPSLVTYN 211

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
           I+++      +FD A  L +++++ G  P R    + +E +   G I+ A +   EM
Sbjct: 212 IIIDLHAKAGKFDMALKLYSDLQEVGYAPDRVTYGIIMEVLGNCGHIEDAEQVFEEM 268


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 111/486 (22%), Positives = 187/486 (38%), Gaps = 74/486 (15%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT---LIGDISSSKFLNVSVNF 140
           S + ++E++ S       +  +    T++    R H+++T   ++ ++SS         F
Sbjct: 160 SKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTF 219

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
             LMQ +   G +E  L       +     +  + N++++ Y K G+  +A+   +Q I 
Sbjct: 220 TTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIA 279

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
           +G  P+  TY   +  L     +  AL+V   +           Y I+V       + +E
Sbjct: 280 DGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 339

Query: 261 AKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDD 320
           AK +LN+M D G                              LPD    N          
Sbjct: 340 AKGILNQMVDRG-----------------------------CLPDITTFNTLI------- 363

Query: 321 DEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVL 380
                        +  G +L+  LD  A   T+   SP+V +      F      +CKV 
Sbjct: 364 -----------AALCTGNRLEEALD-LARQVTVKGVSPDVYT------FNILINALCKV- 404

Query: 381 RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP 440
                P  A   F  +    G T D      ++  L   G +     L+  + S G   P
Sbjct: 405 ---GDPHLALRLFEEMK-NSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG--CP 458

Query: 441 FSTI--RLIIDFYGISKKA--DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
            STI    IID  G+ KK   + A + F D   L G IS+  +   +++L+  L K K+ 
Sbjct: 459 RSTITYNTIID--GLCKKMRIEEAEEVF-DQMDLQG-ISRNAIT--FNTLIDGLCKDKKI 512

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
            DA  ++ +MI  G+ P+  T++ ++ H+  QGD K    +   +  NG E D   +  L
Sbjct: 513 DDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTL 572

Query: 557 IQAYCK 562
           I   CK
Sbjct: 573 INGLCK 578



 Score = 45.8 bits (107), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 48/233 (20%), Positives = 93/233 (39%), Gaps = 2/233 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+ +AL    +   AL + E +K N   + ++ T + L   L    +  +   L+ D+ S
Sbjct: 396 ILINALCKVGDPHLALRLFEEMK-NSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMES 454

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           +     ++ +  ++        +E     +++   +    +  ++N ++    K  K  +
Sbjct: 455 TGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDD 514

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A E   Q+I EG  PN+ TY  ++ H    G +  A ++   +     +     Y  L+ 
Sbjct: 515 AFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLIN 574

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREM 302
           G     R   A  +L  MR  G  P  +A    L+ +     I+ A    REM
Sbjct: 575 GLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREM 627



 Score = 43.9 bits (102), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 4/182 (2%)

Query: 380 LRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
           LR    P+ A         +  +       E+++  L   G ++L+  L+A++R +G ++
Sbjct: 48  LREQPDPDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQV 107

Query: 440 PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFD 498
               +   +D Y   +  D A+    +      P+   +   ++Y+ LL  L +  +   
Sbjct: 108 KLGVVHSFLDSYEGQQLFDDAVDLILNQLQ---PLFGIQADTVVYNHLLNVLVEGSKMKL 164

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
             +V  EM   GI PDV TF+ LM         +    +   +   GV PD   F  L+Q
Sbjct: 165 LESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQ 224

Query: 559 AY 560
            +
Sbjct: 225 GF 226


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 119/533 (22%), Positives = 213/533 (39%), Gaps = 62/533 (11%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM-QWYSTSGDLELVLST 159
           N  T  +L   L K+ R  E +    D    K +  SV    +M   Y+T G L  +   
Sbjct: 307 NCCTYGSLLNYLCKNGRCREARFFF-DSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDL 365

Query: 160 WNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219
            N         +   +NI  S YAK G   +A++ F ++  +G  P++ +Y  +I+ L  
Sbjct: 366 LNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCK 425

Query: 220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM 279
           LG++D A   F+ +    +      +  LV G   V+++++ + L  EM + G  P    
Sbjct: 426 LGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPN--- 482

Query: 280 RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVR---IAY 336
                       I   N  L  +  + R+   +   D  +           GVR   I+Y
Sbjct: 483 ------------IVFFNTILCNLCKEGRVMEGQRLVDSIE---------CMGVRPDVISY 521

Query: 337 GVQLKPWLDPKALANTLDEWSPEV-----VSLLADAKFVWTTRL--VCKVLRHFKSPETA 389
                  +D   LA T+DE S  +     V L  D+ F + T L   CK  R     ++A
Sbjct: 522 ----NTLIDGHCLAGTIDEASKLLEGMVSVGLKPDS-FSYNTLLHGYCKAGR----IDSA 572

Query: 390 WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID 449
           +  F       G T  V     +L  L +         L   + + G +    T  +I++
Sbjct: 573 YSHF-RKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILN 631

Query: 450 FYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS 509
               S   D A+K F +   LC    +  + + ++ ++  L K  R  DA+++   +  +
Sbjct: 632 GLCKSNCVDEAIKMFQN---LCSKGLQLNI-ITFNIMIGALLKGGRKEDAMDLFAAIPAN 687

Query: 510 GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ----------- 558
           G+V +V T+  ++ +   +G  +    LFS + +NG  P++ M   L++           
Sbjct: 688 GLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRA 747

Query: 559 -AYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLAL 610
            AY   L   N   +A+T  +L      +  +  A ++ ++   +N+  S AL
Sbjct: 748 GAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSSAL 800



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 94/449 (20%), Positives = 185/449 (41%), Gaps = 53/449 (11%)

Query: 174  SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
            +YNI+++   K+    EA++ F+ +  +G   N  T+ +MI  L+  G+ + A+++F+A+
Sbjct: 625  TYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAI 684

Query: 234  PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFI 292
            P   + +    Y ++VE  +     +E  SL + M  +G  P   M  AL  R+   G I
Sbjct: 685  PANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDI 744

Query: 293  QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
              A  +L ++                       D+ N  V  +    L            
Sbjct: 745  SRAGAYLSKL-----------------------DERNFSVEASTTSMLISIFSS------ 775

Query: 353  LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
             DE+     SL    + +        +++  +  + A+  F  +  + G T DV     +
Sbjct: 776  -DEYQHHAKSLPKKYRILNEAN-SSALIKKARRIDDAYSLFREMLMK-GLTPDVVTYNTI 832

Query: 413  LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
            L  L + G       L   + +   ++   T  +I++    S   D A K F   ++LC 
Sbjct: 833  LHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIILNGLCKSNCVDEAFKMF---QSLCS 889

Query: 473  PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
               +  + + ++ ++  L K  R  DA+++   +  +G+VPDV T+  +  +   +G  +
Sbjct: 890  KGLQLNI-ITFNIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRLVAENLIEEGSLE 948

Query: 533  IVQKLFSMVRQNGVEPDAYMFKVLIQ------------AYCKYLSNSNLMPDAA-TKELL 579
                LF  + ++G   D+ +   L++            AY   L   N   +A+ T EL+
Sbjct: 949  EFDGLFLTMEKSGTPLDSRLLNALVRRLLQRGDISRAGAYLSKLDEKNFSLEASTTSELI 1008

Query: 580  KKSLWKEGR-RKEAAAVEERCEKINDVPS 607
              SL+  G  +  A ++ E+   +N+  S
Sbjct: 1009 --SLFSRGEYQHHAKSLPEKYRLLNEANS 1035



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 104/476 (21%), Positives = 185/476 (38%), Gaps = 101/476 (21%)

Query: 150 SGDLEL--VLSTWNEYRQRAKLLSTESYNIVMSVYAK-------TGKNFEAVETFRQVID 200
           SG L L   L  ++E    A+  S  ++N +++  ++       T ++   V  F +++ 
Sbjct: 25  SGSLGLGDALKLFDELLPHARPASVVAFNHLLAAVSRSSGRRSTTSESETVVSLFNRMVR 84

Query: 201 EGAI---PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +  I   PN  TY+++I     +G L+     F               LIL  G+    R
Sbjct: 85  DCYIKVAPNRCTYSILIGCFCRMGHLEHGFAAFG--------------LILKTGW----R 126

Query: 258 FDEA--KSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
            D      LLN + D GK  G AM V L+RM E+G            +PD          
Sbjct: 127 MDHIVINQLLNGLCD-GKRVGEAMDVLLQRMPELG-----------CMPDT--------- 165

Query: 316 DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTT-- 373
                             ++Y + LK   + K     L     E++ ++AD + VW+   
Sbjct: 166 ------------------VSYNILLKGLCNEKRAEEAL-----ELLHMMADDQ-VWSCPP 201

Query: 374 RLVC--KVLRHFKSP---ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRL 428
            +V    V+  F +    +  ++ F  +    G   DV     ++  L +    +  + +
Sbjct: 202 NVVSYSTVINGFFTEGQVDKPYNLFLEMM-DRGIPPDVVTYTTVIDGLCKAQLFDRAEAV 260

Query: 429 IAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLR 488
             ++  +G++    T   +I  Y    K    ++   ++ +  GP         Y SLL 
Sbjct: 261 FQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRML-EEMSAGGPKPN---CCTYGSLLN 316

Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548
            L K  R  +A    + MI  GI P V T+  +++ +A +G    +  L +++  NG+ P
Sbjct: 317 YLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISP 376

Query: 549 DAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           + ++F +   AY K             +    L PDA +   L  +L K GR  +A
Sbjct: 377 NHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDA 432



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 5/150 (3%)

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           EL LS  N   Q    ++  +YNI+++   K+    EA + F+ +  +G   N  T+ +M
Sbjct: 847 ELYLSMINSRTQ----MNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIM 902

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           I  L+  G+ + A+++F+A+P   +      Y ++ E  +     +E   L   M   G 
Sbjct: 903 IGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGT 962

Query: 274 -FPGRAMRVALERMQEMGFIQGANEFLREM 302
               R +   + R+ + G I  A  +L ++
Sbjct: 963 PLDSRLLNALVRRLLQRGDISRAGAYLSKL 992



 Score = 39.7 bits (91), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 11/165 (6%)

Query: 74  HALRSAPNADSALSIMEALKSN---PNFSHNQSTLHALATVLAKSQRNHELKTLIGDI-- 128
           H    A   DSA S    + SN   P      + LH L     +++R  E K L  ++  
Sbjct: 561 HGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLF----QTKRFSEAKELYLNMIN 616

Query: 129 SSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN 188
           S +K+   + N   ++     S  ++  +  +     +   L+  ++NI++    K G+ 
Sbjct: 617 SGTKWDIYTYNI--ILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRK 674

Query: 189 FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
            +A++ F  +   G + N  TY +++E+L+  G L+    +FSA+
Sbjct: 675 EDAMDLFAAIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAM 719


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 94/451 (20%), Positives = 184/451 (40%), Gaps = 35/451 (7%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL 143
           SAL+++  ++   +   N     A+   L K  R+ + + L  ++           + ++
Sbjct: 237 SALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSM 296

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
           +  + +SG          E  +R       +YN +++ + K GK FEA E + +++  G 
Sbjct: 297 IVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGI 356

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQ---YLILVEGFVGVERFDE 260
           IPN+ TY  MI+      +LD+A ++F    LM  K  S     +  L++G+ G +R D+
Sbjct: 357 IPNTITYNSMIDGFCKQDRLDAAEDMFY---LMATKGCSPDVFTFTTLIDGYCGAKRIDD 413

Query: 261 AKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREML-----PDKRIKNVRYY 314
              LL+EM   G           +     +G +  A +  ++M+     PD  I      
Sbjct: 414 GMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPD--IVTCNTL 471

Query: 315 EDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTR 374
            DG  D+    D     + +   +Q K  +D  A ++  +   P+V++            
Sbjct: 472 LDGLCDNGKLKD----ALEMFKAMQ-KSKMDLDA-SHPFNGVEPDVLTY---------NI 516

Query: 375 LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
           L+C ++   K  E A   +  + ++ G   D      M+  L +   ++   ++   + S
Sbjct: 517 LICGLINEGKFLE-AEELYEEMPHR-GIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGS 574

Query: 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCK 494
                   T   +I+ Y  + + D  L+ F +     G        ++Y +L+    K  
Sbjct: 575 KSFSPNVVTFNTLINGYCKAGRVDDGLELFCE----MGRRGIVADAIIYITLIYGFRKVG 630

Query: 495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHF 525
               A+++ +EMI SG+ PD  T   ++  F
Sbjct: 631 NINGALDIFQEMISSGVYPDTITIRNMLTGF 661



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 110/528 (20%), Positives = 201/528 (38%), Gaps = 69/528 (13%)

Query: 119 HELKTL------IGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
           HE+K L        D+  S+ L   V+F  LM         +LV+S + +  ++      
Sbjct: 55  HEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDI 114

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            S+NI++  +    K   A+ TF ++   G  P+  T+T ++  L    ++  AL+ F  
Sbjct: 115 YSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQ 174

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGF 291
           +     +     +  L+ G     R  EA +LL+ M +DG  P +      ++ M + G 
Sbjct: 175 MFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGD 234

Query: 292 IQGANEFLREMLPDKR-IKNVRYYE---DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPK 347
              A   LR+M      I NV  Y    D    D   +D  N          L   +  K
Sbjct: 235 TVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQN----------LFTEMQEK 284

Query: 348 ALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWH------------FF-- 393
            +   L  ++  +V   +  ++    +L+ ++L    SP+   +            FF  
Sbjct: 285 GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEA 344

Query: 394 --CWVAYQP-GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF 450
              +    P G   +      M+    +   ++  + +   + + G      T   +ID 
Sbjct: 345 AELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDG 404

Query: 451 YGISKKADAALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF 508
           Y  +K+ D  ++  H+   R L      +  ++    L+  L        A+++ ++MI 
Sbjct: 405 YCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNA------ALDLSQQMIS 458

Query: 509 SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ-----------NGVEPDAYMFKVLI 557
           SG+ PD+ T + L+      G  K   ++F  +++           NGVEPD   + +LI
Sbjct: 459 SGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILI 518

Query: 558 QAYC---KYLSNSNL---------MPDAATKELLKKSLWKEGRRKEAA 593
                  K+L    L         +PD  T   +   L K+ R  EA 
Sbjct: 519 CGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEAT 566



 Score = 40.0 bits (92), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 37/83 (44%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +L Y+ L+  L    +  +A  + EEM   GIVPD  T+S ++     Q       ++F 
Sbjct: 511 VLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFV 570

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK 562
            +      P+   F  LI  YCK
Sbjct: 571 SMGSKSFSPNVVTFNTLINGYCK 593


>gi|115489040|ref|NP_001067007.1| Os12g0557800 [Oryza sativa Japonica Group]
 gi|113649514|dbj|BAF30026.1| Os12g0557800 [Oryza sativa Japonica Group]
          Length = 682

 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 97/439 (22%), Positives = 178/439 (40%), Gaps = 50/439 (11%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN ++    + G   EAV   RQ+  EG  PN  TYT++++   N G+++ A  +   +
Sbjct: 211 TYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKM 270

Query: 234 PLMRIKRTSKQYLILVEG-FVGVERFDEAKSLLNE-MRDDGKFPGRAMRVALERMQEMGF 291
               +  +   Y  LV G F  +ER D+A  +L++ +  +      A    L  + +   
Sbjct: 271 KEKGVAPSEATYRTLVHGVFRCLER-DKAYRMLSDWLGHETSLHPSACHTMLYCLSKKDM 329

Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALAN 351
            + A EF      +KR+    Y  D            ++   I     LK  L+   L  
Sbjct: 330 AKEAVEF------EKRMSARGYLLD------------STAFGIVMSCALK-CLEVSDLCE 370

Query: 352 TLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEK 411
            LD +     +   D        +V K L + K+   A H+   +  + G    V +   
Sbjct: 371 LLDSFIKNGGNPGFDVYI-----MVIKSLLNCKNFSKANHYLGHMVLK-GLLSSVMSYNM 424

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           ++    + G V+  + ++ +++  G      T   +I  Y       + L   H+ + + 
Sbjct: 425 VIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGY-------SKLGNVHNAKVVL 477

Query: 472 GPISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
             + +   M   + ++SL+  L    +  DA    EEM   G+ P+ QT++ LM+     
Sbjct: 478 KMLMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSA 537

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATK 576
           G       L + ++ +GV PDAY F  LI ++C+             +    ++PD+ T 
Sbjct: 538 GHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTY 597

Query: 577 ELLKKSLWKEGRRKEAAAV 595
             L K+L  E R  +A  +
Sbjct: 598 NSLIKALCDERRVNKAKEI 616



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 83/182 (45%), Gaps = 4/182 (2%)

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
            NP F      + +L      S+ NH L    G +     L+  +++  ++  +  +G +
Sbjct: 380 GNPGFDVYIMVIKSLLNCKNFSKANHYL----GHMVLKGLLSSVMSYNMVIDCFVKAGAV 435

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           +       E + +  L +  ++N ++S Y+K G    A    + +++ G +P+  T+T +
Sbjct: 436 DKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMPDIITFTSL 495

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           I+ L N  +LD A   F  +    ++  ++ Y +L+         ++A  LLN+M+ DG 
Sbjct: 496 IDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGV 555

Query: 274 FP 275
            P
Sbjct: 556 TP 557



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/209 (19%), Positives = 95/209 (45%), Gaps = 8/209 (3%)

Query: 58  LSSLLN-DRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQ 116
           LSS+++ + ++D F+   A+      D A  I++ ++ +  F  N  T + L +  +K  
Sbjct: 416 LSSVMSYNMVIDCFVKAGAV------DKAEEIVKEMQ-DKGFLPNLVTFNTLISGYSKLG 468

Query: 117 RNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYN 176
             H  K ++  +    F+   + F +L+     +  L+     + E  +     + ++YN
Sbjct: 469 NVHNAKVVLKMLMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYN 528

Query: 177 IVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM 236
           ++M      G   +A++   ++  +G  P++ ++  +I     + K+D A ++F+ +   
Sbjct: 529 VLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRF 588

Query: 237 RIKRTSKQYLILVEGFVGVERFDEAKSLL 265
            +   S  Y  L++      R ++AK +L
Sbjct: 589 GVVPDSYTYNSLIKALCDERRVNKAKEIL 617



 Score = 46.2 bits (108), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 46/228 (20%), Positives = 101/228 (44%), Gaps = 24/228 (10%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSH-NQSTLHALATVLAKSQRNHEL--- 121
           LLD FI        P  D  + ++++L +  NFS  N    H +   L  S  ++ +   
Sbjct: 371 LLDSFIKNGG---NPGFDVYIMVIKSLLNCKNFSKANHYLGHMVLKGLLSSVMSYNMVID 427

Query: 122 -----------KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL---ELVLSTWNEYRQRA 167
                      + ++ ++    FL   V F  L+  YS  G++   ++VL    E+    
Sbjct: 428 CFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMP 487

Query: 168 KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227
            +++   +  ++     T +  +A   F ++ + G  PN++TY V++  L + G ++ A+
Sbjct: 488 DIIT---FTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAI 544

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           ++ + + +  +   +  +  L+  F  + + D+A+ + N+M   G  P
Sbjct: 545 DLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVP 592



 Score = 45.4 bits (106), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 45/90 (50%)

Query: 189 FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
           + A   F+Q+  +G  P+  TY  ++  +   G +D A+ +   +    I+     Y +L
Sbjct: 191 YTAYLRFQQMPADGCRPDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTML 250

Query: 249 VEGFVGVERFDEAKSLLNEMRDDGKFPGRA 278
           V+GF    R +EA  +L++M++ G  P  A
Sbjct: 251 VDGFCNAGRVEEAFRMLDKMKEKGVAPSEA 280



 Score = 45.4 bits (106), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 116/296 (39%), Gaps = 46/296 (15%)

Query: 345 DPKALANTL--DEWSPEVVSLLADAKFVWTTRLVCKVLR------HFKSPETAWHFFCWV 396
           DP   A+ L  D+W P + +  A A      R V + LR          P      + W 
Sbjct: 48  DPARAASILAEDDWFPRLNAEFAAALPRLGPRFVVRALRAAAEREGLGEPLLCVRLYVWA 107

Query: 397 A-YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455
           + +   +  D      ++  L R G V L  RL+A++R  G  +    +  +++ +G   
Sbjct: 108 SRFGAHFARDGGVRRALVGALWRRGPVVLSGRLVAEVRGCGCEVSEELVCALVESWGRLG 167

Query: 456 KADAALKAF-HDDRTLCGPIS-------KFKLM---------LLYSSLLRTLTKCKRDF- 497
            A  A + F    R    P +       +F+ M           Y+SL+  +  C+R   
Sbjct: 168 LARYAHEVFVQMPRLGLRPSTAVYTAYLRFQQMPADGCRPDHFTYNSLVHGV--CRRGIV 225

Query: 498 -DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
            +A+ ++ +M   GI P+V T++ L+  F   G  +   ++   +++ GV P    ++ L
Sbjct: 226 DEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTL 285

Query: 557 IQAYCKYLS--------------NSNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
           +    + L                ++L P A    L    L K+   KEA   E+R
Sbjct: 286 VHGVFRCLERDKAYRMLSDWLGHETSLHPSACHTMLY--CLSKKDMAKEAVEFEKR 339


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 121/551 (21%), Positives = 209/551 (37%), Gaps = 77/551 (13%)

Query: 79  APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDIS---SSKFL- 134
           A N     +I+  L     ++  +  +  L   L  S+R+    ++   +S   SSKF  
Sbjct: 67  AKNPQLYSAIIHVLTGAKLYAKARCLMRDLIQCLQNSRRSRICCSVFNVLSRLESSKFTP 126

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
           NV   F  L+  +S  G +E  L  W  Y+    L + ++ N+V+    K G+     + 
Sbjct: 127 NV---FGVLIIAFSEMGLVEEAL--WVYYKMDV-LPAMQACNMVLDGLVKKGRFDTMWKV 180

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
           +  ++  GA PN  TY  +I+     G    A  +F  +   +I  T   Y IL+ G  G
Sbjct: 181 YGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCG 240

Query: 255 VERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRY 313
             R  EA+S+   MR+ G  P        ++   ++  ++ A E  +EML D  + NV  
Sbjct: 241 ESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVT 300

Query: 314 YE---DG-SDDDEDEN------DDNNSGVR---IAYGVQLKPWLDPKALANTLDEWSP-E 359
           +    DG    DE  +      D  + GV      Y   +  +     L+  L   S  E
Sbjct: 301 FGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIE 360

Query: 360 VVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH 419
              +L D   V+T  ++ K L      E A         + G+  +      ++    + 
Sbjct: 361 KHEILPD---VFTYSILIKGLCGVDRMEEADGLL-QEMKKKGFLPNAVTYNTLIDGYCKE 416

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL 479
           G++E    + +++   G+     T   +ID Y  + K +AA                   
Sbjct: 417 GNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAA------------------- 457

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           M LY+                    EM+  G++PDV  ++ L+      G+ K   +L  
Sbjct: 458 MGLYT--------------------EMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHK 497

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERC 599
            +++ G+ P+ +    LI   CK         D    + +K  L K G     +   E  
Sbjct: 498 EMQEAGLHPNVFTLSCLIDGLCK---------DGRISDAIKLFLAKTGTDTTGSKTNELD 548

Query: 600 EKINDVPSLAL 610
             +  + SLAL
Sbjct: 549 RSLYQMCSLAL 559


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 112/514 (21%), Positives = 207/514 (40%), Gaps = 55/514 (10%)

Query: 106 HALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQ 165
           ++L   L+K++R  E ++ + ++  +     +  +   +  Y  + +         E R+
Sbjct: 491 NSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE 550

Query: 166 RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
              L +      +++ Y K GK  EA   +R ++D+G + +++TYTV++  L    K+D 
Sbjct: 551 CGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDD 610

Query: 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER 285
           A E+F  +    I      Y +L+ GF  +    +A S+ +EM ++G  P     V +  
Sbjct: 611 AEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTP----NVIIYN 666

Query: 286 MQEMGFIQ-GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWL 344
           M   GF + G  E  +E+L +  +K +                 N+   + Y   +  + 
Sbjct: 667 MLLGGFCRSGEIEKAKELLDEMSVKGLH---------------PNA---VTYCTIIDGYC 708

Query: 345 DPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTH 404
               LA     +    +  L    FV+TT LV    R     E A   F     + G   
Sbjct: 709 KSGDLAEAFRLFDEMKLKGLVPDSFVYTT-LVDGCCR-LNDVERAITIF--GTNKKGCAS 764

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFS-----TIRLIIDFYGISKKADA 459
                  ++  + + G  EL   ++ +L  DG    F      T  ++ID+       +A
Sbjct: 765 STAPFNALINWVFKFGKTELKTEVLNRLM-DGSFDRFGKPNDVTYNIMIDYLCKEGNLEA 823

Query: 460 ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           A + FH  +      +    ++ Y+SLL    K  R  +   V +E I +GI PD   +S
Sbjct: 824 AKELFHQMQN----ANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYS 879

Query: 520 GLMYHFALQG-DEKIVQKLFSMVRQNGVEPDAYM----FKVLIQAYCKY----------- 563
            ++  F  +G   K +  +  M  +N V+    +     + L+  + K            
Sbjct: 880 VIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVME 939

Query: 564 -LSNSNLMPDAATK-ELLKKSLWKEGRRKEAAAV 595
            +     +PD+AT  EL+ +S     +R EA AV
Sbjct: 940 NMVRLQYIPDSATVIELINESCISSNQRVEADAV 973



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 100/242 (41%), Gaps = 9/242 (3%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           ++   L    NAD+A  ++  + S+   +           V++K     + K L   + +
Sbjct: 317 LLIDGLLKGRNADAAKGLVHEMVSH-GINIKPYMYDCCICVMSKEGVMEKAKALFDGMIA 375

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           S  +  +  + +L++ Y    ++        E ++R  ++S  +Y  V+     +G    
Sbjct: 376 SGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDG 435

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A    +++I  G  PN   YT +I+  +   +   A+ V   +    I      Y  L+ 
Sbjct: 436 AYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLII 495

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKN 310
           G    +R DEA+S L EM ++G  P      A       G+I+ A+EF      DK +K 
Sbjct: 496 GLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFIS----GYIE-ASEFAS---ADKYVKE 547

Query: 311 VR 312
           +R
Sbjct: 548 MR 549



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 90/452 (19%), Positives = 172/452 (38%), Gaps = 67/452 (14%)

Query: 160 WNEYR---QRAKLLSTESYNIVMSVYAKTGKN-------FEAVETFR------------- 196
           W+ Y+   +R  +   ++Y++++  + + G         F+  + FR             
Sbjct: 206 WDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLK 265

Query: 197 -QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
             +I +G +P   TY V+I+ L  + +L+ A  +   +  + +   +  Y +L++G +  
Sbjct: 266 ESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKG 325

Query: 256 ERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
              D AK L++EM   G           +  M + G ++ A      M+    I   + Y
Sbjct: 326 RNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAY 385

Query: 315 E---DGSDDDEDENDDNNSGVRI----------AYGVQLKPWL---DPKALANTLDE--- 355
               +G   +++        V +           YG  +K      D     N + E   
Sbjct: 386 ASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIA 445

Query: 356 --WSPEVVSLLADAK-FVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
               P VV      K F+  +R     +VL+  K    A   FC+ +   G +      E
Sbjct: 446 SGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDE 505

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470
                 AR   VE+V+        +G++    T    I  Y  + +  +A K   + R  
Sbjct: 506 ------ARSFLVEMVE--------NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE- 550

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
           CG +      +L + L+    K  +  +A +    M+  GI+ D +T++ LM        
Sbjct: 551 CGVLPN---KVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDK 607

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
               +++F  +R  G+ PD + + VLI  + K
Sbjct: 608 VDDAEEIFREMRGKGIAPDVFSYGVLINGFSK 639



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 58/127 (45%), Gaps = 12/127 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +++Y++L++T  +  R  DA+ VL+EM   GI PD+  ++ L+   +        +    
Sbjct: 452 VVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLV 511

Query: 540 MVRQNGVEPDAYMFKVLIQA------------YCKYLSNSNLMPDAATKELLKKSLWKEG 587
            + +NG++P+A+ +   I              Y K +    ++P+      L     K+G
Sbjct: 512 EMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKG 571

Query: 588 RRKEAAA 594
           +  EA +
Sbjct: 572 KVIEACS 578



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 12/128 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +  Y+SL+  L+K KR  +A + L EM+ +G+ P+  T+   +  +    +     K   
Sbjct: 487 IFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVK 546

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEG 587
            +R+ GV P+  +   LI  YCK             + +  ++ DA T  +L   L+K  
Sbjct: 547 EMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKND 606

Query: 588 RRKEAAAV 595
           +  +A  +
Sbjct: 607 KVDDAEEI 614


>gi|224118166|ref|XP_002317747.1| predicted protein [Populus trichocarpa]
 gi|222858420|gb|EEE95967.1| predicted protein [Populus trichocarpa]
          Length = 498

 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 103/480 (21%), Positives = 202/480 (42%), Gaps = 48/480 (10%)

Query: 71  IVTHALRSAPNADSALSIME-ALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDIS 129
           ++TH      N D A  I + A K +P FSH   T H++   L++++    +++L+  +S
Sbjct: 21  MITHQ----ENLDLAFQIFDYAGKYHPGFSHTYDTYHSIIDKLSRARAFDGVESLLSQLS 76

Query: 130 --SSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLL-STESYNIVMSVYAKTG 186
             SS        F+++++ Y  +G   L L T+   ++   +  S +  N +++V+ +  
Sbjct: 77  RNSSHIKCGDDVFISVIRNYGLAGRPRLALKTFTRIKEEFSMQPSVKLLNTLLNVFVQNK 136

Query: 187 KNFEAVETFRQVIDE-GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
           +      T +   D+ G +PN  ++ ++I+ L     +++AL+VF  +P M +      Y
Sbjct: 137 RYHLVGSTLKNCKDKYGVLPNVFSFNILIKALCKKNDVENALKVFDEMPTMGMIPNLVTY 196

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPD 305
             ++ GFV       A+ + +E+ D G  P       L     +G+ +     L + +  
Sbjct: 197 TTILGGFVSRGDLVNAEKVFSEISDKGWLPDATTYTVL----MVGYCKQGR--LSDAI-- 248

Query: 306 KRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLA 365
           K + N+ Y  +G + +E           + YGV +  +   K      +     ++  + 
Sbjct: 249 KVMDNMEY--NGVEPNE-----------VTYGVMIDAYCKEKKSGEARN-----LIDDML 290

Query: 366 DAKFVWTTRLVCK---VLRHFKSPETAWHFFCWV-AYQPGYTHDVYALEKMLTILARHGH 421
           D KF+ ++ L CK   VL      E A H   W    +     D   +  ++  L + G 
Sbjct: 291 DKKFLPSSTLCCKVIDVLCEDGKVENACHL--WKRMLEKNCLPDNAIMSTLIHWLCKEGK 348

Query: 422 VELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLM 480
           V    +L  +    G      T   +I       + + A + + D     C P +     
Sbjct: 349 VWEARKLFDEFEQ-GTIPSLMTYNTLIAGMCERGELNEAGRLWDDMVEKRCRPNA----- 402

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
             Y+ L++   K     + + +LEEM+ +G +P+  T++ L+      G E  V K+ SM
Sbjct: 403 FTYNMLIKGFMKAGVVKEGVRILEEMLDNGCLPNKSTYTLLIEGLQESGMEGDVDKVMSM 462



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/279 (20%), Positives = 120/279 (43%), Gaps = 9/279 (3%)

Query: 37  LRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNP 96
           L RA+  D +   +   S NS      D +    I  + L   P    AL     +K   
Sbjct: 59  LSRARAFDGVESLLSQLSRNSSHIKCGDDVFISVIRNYGLAGRPRL--ALKTFTRIKEEF 116

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV-NFMNLMQWYSTSGDLEL 155
           +   +   L+ L  V  +++R H + + + +      +  +V +F  L++      D+E 
Sbjct: 117 SMQPSVKLLNTLLNVFVQNKRYHLVGSTLKNCKDKYGVLPNVFSFNILIKALCKKNDVEN 176

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
            L  ++E      + +  +Y  ++  +   G    A + F ++ D+G +P++ TYTV++ 
Sbjct: 177 ALKVFDEMPTMGMIPNLVTYTTILGGFVSRGDLVNAEKVFSEISDKGWLPDATTYTVLMV 236

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                G+L  A++V   +    ++     Y ++++ +   ++  EA++L+++M D    P
Sbjct: 237 GYCKQGRLSDAIKVMDNMEYNGVEPNEVTYGVMIDAYCKEKKSGEARNLIDDMLDKKFLP 296

Query: 276 GRAMRV-ALERMQEMGFIQGANEFLREM-----LPDKRI 308
              +    ++ + E G ++ A    + M     LPD  I
Sbjct: 297 SSTLCCKVIDVLCEDGKVENACHLWKRMLEKNCLPDNAI 335



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 40/232 (17%)

Query: 371 WTTRLVCK----VLRHFKSPETAWHFFCWVA-YQPGYTHDVYALEKMLTILARHGHVELV 425
           W  RL  K    ++ H ++ + A+  F +   Y PG++H       ++  L+R    + V
Sbjct: 9   WPQRLYPKRLISMITHQENLDLAFQIFDYAGKYHPGFSHTYDTYHSIIDKLSRARAFDGV 68

Query: 426 DRLIAKL--RSDGMRLPFSTIRLIIDFYGISKKADAALKAFH--DDRTLCGPISKFKLML 481
           + L+++L   S  ++        +I  YG++ +   ALK F    +     P  K    L
Sbjct: 69  ESLLSQLSRNSSHIKCGDDVFISVIRNYGLAGRPRLALKTFTRIKEEFSMQPSVKLLNTL 128

Query: 482 L--------YSSLLRTLTKCKRDF-----------------------DAINVLEEMIFSG 510
           L        Y  +  TL  CK  +                       +A+ V +EM   G
Sbjct: 129 LNVFVQNKRYHLVGSTLKNCKDKYGVLPNVFSFNILIKALCKKNDVENALKVFDEMPTMG 188

Query: 511 IVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           ++P++ T++ ++  F  +GD    +K+FS +   G  PDA  + VL+  YCK
Sbjct: 189 MIPNLVTYTTILGGFVSRGDLVNAEKVFSEISDKGWLPDATTYTVLMVGYCK 240



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 99/239 (41%), Gaps = 19/239 (7%)

Query: 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR 445
           P  A   F  +  +      V  L  +L +  ++    LV   +   +     LP +   
Sbjct: 102 PRLALKTFTRIKEEFSMQPSVKLLNTLLNVFVQNKRYHLVGSTLKNCKDKYGVLP-NVFS 160

Query: 446 LIIDFYGISKKADA--ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVL 503
             I    + KK D   ALK F +  T+ G I     ++ Y+++L          +A  V 
Sbjct: 161 FNILIKALCKKNDVENALKVFDEMPTM-GMIPN---LVTYTTILGGFVSRGDLVNAEKVF 216

Query: 504 EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY 563
            E+   G +PD  T++ LM  +  QG      K+   +  NGVEP+   + V+I AYCK 
Sbjct: 217 SEISDKGWLPDATTYTVLMVGYCKQGRLSDAIKVMDNMEYNGVEPNEVTYGVMIDAYCKE 276

Query: 564 LSNS---NLMPDAATKELLKKS---------LWKEGRRKEAAAVEERCEKINDVPSLAL 610
             +    NL+ D   K+ L  S         L ++G+ + A  + +R  + N +P  A+
Sbjct: 277 KKSGEARNLIDDMLDKKFLPSSTLCCKVIDVLCEDGKVENACHLWKRMLEKNCLPDNAI 335


>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
 gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
 gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 108/521 (20%), Positives = 211/521 (40%), Gaps = 58/521 (11%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
           NF H+ +T  AL   L +++   EL   I D+  S     ++    L +     G +++V
Sbjct: 120 NFEHDSTTYMALIRCLDENRLVGELWRTIQDMVKSP---CAIGPSELSEIVKILGRVKMV 176

Query: 157 ---LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG-AIPNSRTYTV 212
              LS + + + R    +  +YN V+ +  + G + +  E + ++  EG   P++ TY+ 
Sbjct: 177 NKALSIFYQVKGRKCRPTAGTYNSVILMLMQEGHHEKVHELYNEMCSEGHCFPDTVTYSA 236

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +I     L + DSA+ +F  +    ++ T+K Y  L+  +  + + +EA +L++EMR   
Sbjct: 237 LISAFGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMRMRR 296

Query: 273 KFPGRAMRVALER-MQEMGFIQGANEFLREMLPDKRIKNVRYYED-----GSDDDEDEND 326
             P       L R + + G ++ A    + ML D    +V    +     G  D      
Sbjct: 297 CVPTVYTYTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSD------ 350

Query: 327 DNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSP 386
                 R+   V+L    +   L N     +P VV          T   + K L   K+P
Sbjct: 351 ------RLKEAVEL---FEEMRLLNC----TPNVV----------TYNTIIKSLFEDKAP 387

Query: 387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
            +    +     + G     +    ++    +   VE    L+ ++   G     +    
Sbjct: 388 PSEASSWLERMKKDGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCS 447

Query: 447 IIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
           +I+  G +K+ +AA + F + +  CG  S    + +Y+ +++   KC R  +A+ +  EM
Sbjct: 448 LINSLGKAKRYEAANELFQELKENCGSSS----VRVYAVMIKHFGKCGRFNEAMGLFNEM 503

Query: 507 IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY--- 563
              G +PDV  ++ L+              LF  + +NG  PD     +++    +    
Sbjct: 504 KKLGCIPDVYAYNALITGMVRADMMDEAFSLFRTMEENGCNPDINSHNIILNGLARTGGP 563

Query: 564 ---------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
                    + +S + PDA +   +   L + G  +EA  +
Sbjct: 564 KRAMEMFAKMKSSTIKPDAVSYNTVLGCLSRAGLFEEATKL 604



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 104/274 (37%), Gaps = 19/274 (6%)

Query: 355 EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT 414
           +W P+    L   K     RLV +VL+          FF W   +  + HD      ++ 
Sbjct: 74  KWGPDAEKALEVLKLKLDIRLVREVLKIDVEVHVKIQFFKWAGKKRNFEHDSTTYMALIR 133

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGP 473
            L  +  V  + R I  +      +  S +  I+   G  K  + AL  F+  +   C P
Sbjct: 134 CLDENRLVGELWRTIQDMVKSPCAIGPSELSEIVKILGRVKMVNKALSIFYQVKGRKCRP 193

Query: 474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSG-IVPDVQTFSGLMYHFALQGDEK 532
            +       Y+S++  L +         +  EM   G   PD  T+S L+  F     + 
Sbjct: 194 TAG-----TYNSVILMLMQEGHHEKVHELYNEMCSEGHCFPDTVTYSALISAFGKLNRDD 248

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLK 580
              +LF  +++NG++P A ++  L+  Y K             +     +P   T   L 
Sbjct: 249 SAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMRMRRCVPTVYTYTELI 308

Query: 581 KSLWKEGRRKEAAAVEERCEKINDVPSLALRGHI 614
           + L K GR ++A  V +   K    P + L  ++
Sbjct: 309 RGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNL 342



 Score = 47.0 bits (110), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 99/238 (41%), Gaps = 11/238 (4%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           DSA+ + + +K N            L  +  K  +  E   L+ ++   + +     +  
Sbjct: 248 DSAVRLFDEMKEN-GLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMRMRRCVPTVYTYTE 306

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L++    SG +E     +    +          N ++++  ++ +  EAVE F ++    
Sbjct: 307 LIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEEMRLLN 366

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR-----TSKQYLILVEGFVGVER 257
             PN  TY  +I+ L      D A    ++  L R+K+     +S  Y IL++GF    R
Sbjct: 367 CTPNVVTYNTIIKSLFE----DKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFCKTNR 422

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
            ++A  LL EM + G  P  A   +L   + +    + ANE  +E+  +    +VR Y
Sbjct: 423 VEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQELKENCGSSSVRVY 480



 Score = 46.2 bits (108), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 41/214 (19%), Positives = 88/214 (41%), Gaps = 7/214 (3%)

Query: 59  SSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRN 118
           SS     L+D F  T+ +      + AL ++E +     F    +   +L   L K++R 
Sbjct: 406 SSFTYSILIDGFCKTNRV------EKALLLLEEMDEK-GFPPCPAAYCSLINSLGKAKRY 458

Query: 119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV 178
                L  ++  +   +    +  +++ +   G     +  +NE ++   +    +YN +
Sbjct: 459 EAANELFQELKENCGSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNAL 518

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI 238
           ++   +     EA   FR + + G  P+  ++ +++  L   G    A+E+F+ +    I
Sbjct: 519 ITGMVRADMMDEAFSLFRTMEENGCNPDINSHNIILNGLARTGGPKRAMEMFAKMKSSTI 578

Query: 239 KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           K  +  Y  ++        F+EA  L+ EM   G
Sbjct: 579 KPDAVSYNTVLGCLSRAGLFEEATKLMKEMNSKG 612


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 112/526 (21%), Positives = 203/526 (38%), Gaps = 65/526 (12%)

Query: 119 HELKTL------IGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
           HE+K L        D+  S+ L   V+F  LM         +LV+S + +  ++      
Sbjct: 55  HEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDI 114

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            S+NI++  +    K   A+ TF ++   G  P+  T+T ++  L    ++  AL +F  
Sbjct: 115 YSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQ 174

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGF 291
           +     +     +  L+ G     R  EA +LL+ M +DG  P +      ++ M + G 
Sbjct: 175 MFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGD 234

Query: 292 IQGANEFLREMLPDKR-IKNVRYYE---DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPK 347
              A   LR+M      I NV  Y    D    D   +D  N          L   +  K
Sbjct: 235 TVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQN----------LFTEMQEK 284

Query: 348 ALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWH------------FF-- 393
            +   L  ++  +V   +  ++    +L+ ++L    SP+   +            FF  
Sbjct: 285 GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEA 344

Query: 394 --CWVAYQP-GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF 450
              +    P G   +      M+    +   ++  + +   + + G      T   +ID 
Sbjct: 345 EELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDG 404

Query: 451 YGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSG 510
           Y  +K+ D  ++  H + T  G ++       Y++L+           A+++L+EMI SG
Sbjct: 405 YCGAKRIDDGMELLH-EMTETGLVAD---TTTYNTLIHGFYLVGDLNAALDLLQEMISSG 460

Query: 511 IVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ-----------NGVEPDAYMFKVLIQA 559
           + PD+ T   L+      G  K   ++F ++++           NGVEPD   + +LI  
Sbjct: 461 LCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISG 520

Query: 560 YC---KYLSNSNL---------MPDAATKELLKKSLWKEGRRKEAA 593
                K+L    L         +PD  T   +   L K+ R  EA 
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEAT 566



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 89/447 (19%), Positives = 174/447 (38%), Gaps = 33/447 (7%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL 143
           SAL+++  ++   +   N     A+   L K  R+ + + L  ++           + ++
Sbjct: 237 SALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSM 296

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
           +  + +SG          E  +R       +YN +++ + K GK FEA E + +++  G 
Sbjct: 297 IVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGI 356

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL---ILVEGFVGVERFDE 260
           IPN+ TY+ MI+      +LD+A  +F    LM  K  S   +    L++G+ G +R D+
Sbjct: 357 IPNTITYSSMIDGFCKQNRLDAAEHMFY---LMATKGCSPNLITFNTLIDGYCGAKRIDD 413

Query: 261 AKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSD 319
              LL+EM + G           +     +G +  A + L+EM+      ++   +   D
Sbjct: 414 GMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLD 473

Query: 320 DDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLD----EWSPEVVSLLADAKFVWTTRL 375
              D     ++        + K  LD     N ++     ++  +  L+ + KF+    L
Sbjct: 474 GLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEEL 533

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
                      E   H         G   D      M+  L +   ++   ++   + S 
Sbjct: 534 Y----------EEMPH--------RGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSK 575

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR 495
                  T   +I+ Y  + + D  L+ F +     G        + Y +L+    K   
Sbjct: 576 SFSPNVVTFTTLINGYCKAGRVDDGLELFCE----MGRRGIVANAITYITLICGFRKVGN 631

Query: 496 DFDAINVLEEMIFSGIVPDVQTFSGLM 522
              A+++ +EMI SG+ PD  T   ++
Sbjct: 632 INGALDIFQEMISSGVYPDTITIRNML 658



 Score = 39.7 bits (91), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 35/80 (43%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+  L    +  +A  + EEM   GIVPD  T+S ++     Q       ++F  + 
Sbjct: 514 YNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMG 573

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
                P+   F  LI  YCK
Sbjct: 574 SKSFSPNVVTFTTLINGYCK 593


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 112/526 (21%), Positives = 203/526 (38%), Gaps = 65/526 (12%)

Query: 119 HELKTL------IGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
           HE+K L        D+  S+ L   V+F  LM         +LV+S + +  ++      
Sbjct: 55  HEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDI 114

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            S+NI++  +    K   A+ TF ++   G  P+  T+T ++  L    ++  AL+ F  
Sbjct: 115 YSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQ 174

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGF 291
           +     +     +  L+ G     R  EA +LL+ M +DG  P +      ++ M + G 
Sbjct: 175 MFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGD 234

Query: 292 IQGANEFLREMLPDKR-IKNVRYYE---DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPK 347
              A   LR+M      I NV  Y    D    D   +D  N          L   +  K
Sbjct: 235 TVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQN----------LFTEMQEK 284

Query: 348 ALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWH------------FF-- 393
            +   L  ++  +V   +  ++    +L+ ++L    SP+   +            FF  
Sbjct: 285 GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEA 344

Query: 394 --CWVAYQP-GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF 450
              +    P G   +      M+    +   ++  + +   + + G      T   +ID 
Sbjct: 345 EELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDG 404

Query: 451 YGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSG 510
           Y  +K+ D  ++  H + T  G ++       Y++L+           A+++L+EMI SG
Sbjct: 405 YCGAKRIDDGMELLH-EMTETGLVAD---TTTYNTLIHGFYLVGDLNAALDLLQEMISSG 460

Query: 511 IVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ-----------NGVEPDAYMFKVLIQA 559
           + PD+ T   L+      G  K   ++F ++++           NGVEPD   + +LI  
Sbjct: 461 LCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISG 520

Query: 560 YC---KYLSNSNL---------MPDAATKELLKKSLWKEGRRKEAA 593
                K+L    L         +PD  T   +   L K+ R  EA 
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEAT 566



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 89/447 (19%), Positives = 174/447 (38%), Gaps = 33/447 (7%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL 143
           SAL+++  ++   +   N     A+   L K  R+ + + L  ++           + ++
Sbjct: 237 SALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSM 296

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
           +  + +SG          E  +R       +YN +++ + K GK FEA E + +++  G 
Sbjct: 297 IVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGI 356

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL---ILVEGFVGVERFDE 260
           IPN+ TY+ MI+      +LD+A  +F    LM  K  S   +    L++G+ G +R D+
Sbjct: 357 IPNTITYSSMIDGFCKQNRLDAAEHMFY---LMATKGCSPNLITFNTLIDGYCGAKRIDD 413

Query: 261 AKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSD 319
              LL+EM + G           +     +G +  A + L+EM+      ++   +   D
Sbjct: 414 GMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLD 473

Query: 320 DDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLD----EWSPEVVSLLADAKFVWTTRL 375
              D     ++        + K  LD     N ++     ++  +  L+ + KF+    L
Sbjct: 474 GLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEEL 533

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
                      E   H         G   D      M+  L +   ++   ++   + S 
Sbjct: 534 Y----------EEMPH--------RGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSK 575

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR 495
                  T   +I+ Y  + + D  L+ F +     G        + Y +L+    K   
Sbjct: 576 SFSPNVVTFTTLINGYCKAGRVDDGLELFCE----MGRRGIVANAITYITLICGFRKVGN 631

Query: 496 DFDAINVLEEMIFSGIVPDVQTFSGLM 522
              A+++ +EMI SG+ PD  T   ++
Sbjct: 632 INGALDIFQEMISSGVYPDTITIRNML 658



 Score = 39.7 bits (91), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 35/80 (43%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+  L    +  +A  + EEM   GIVPD  T+S ++     Q       ++F  + 
Sbjct: 514 YNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMG 573

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
                P+   F  LI  YCK
Sbjct: 574 SKSFSPNVVTFTTLINGYCK 593


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 112/514 (21%), Positives = 207/514 (40%), Gaps = 55/514 (10%)

Query: 106 HALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQ 165
           ++L   L+K++R  E ++ + ++  +     +  +   +  Y  + +         E R+
Sbjct: 491 NSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE 550

Query: 166 RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
              L +      +++ Y K GK  EA   +R ++D+G + +++TYTV++  L    K+D 
Sbjct: 551 CGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDD 610

Query: 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER 285
           A E+F  +    I      Y +L+ GF  +    +A S+ +EM ++G  P     V +  
Sbjct: 611 AEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTP----NVIIYN 666

Query: 286 MQEMGFIQ-GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWL 344
           M   GF + G  E  +E+L +  +K +                 N+   + Y   +  + 
Sbjct: 667 MLLGGFCRSGEIEKAKELLDEMSVKGLH---------------PNA---VTYCTIIDGYC 708

Query: 345 DPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTH 404
               LA     +    +  L    FV+TT LV    R     E A   F     + G   
Sbjct: 709 KSGDLAEAFRLFDEMKLKGLVPDSFVYTT-LVDGCCR-LNDVERAITIF--GTNKKGCAS 764

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFS-----TIRLIIDFYGISKKADA 459
                  ++  + + G  EL   ++ +L  DG    F      T  ++ID+       +A
Sbjct: 765 STAPFNALINWVFKFGKTELKTEVLNRLM-DGSFDRFGKPNDVTYNIMIDYLCKEGNLEA 823

Query: 460 ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           A + FH  +      +    ++ Y+SLL    K  R  +   V +E I +GI PD   +S
Sbjct: 824 AKELFHQMQN----ANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYS 879

Query: 520 GLMYHFALQG-DEKIVQKLFSMVRQNGVEPDAYM----FKVLIQAYCKY----------- 563
            ++  F  +G   K +  +  M  +N V+    +     + L+  + K            
Sbjct: 880 VIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVME 939

Query: 564 -LSNSNLMPDAATK-ELLKKSLWKEGRRKEAAAV 595
            +     +PD+AT  EL+ +S     +R EA AV
Sbjct: 940 NMVRLQYIPDSATVIELINESCISSNQRVEADAV 973



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 100/242 (41%), Gaps = 9/242 (3%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           ++   L    NAD+A  ++  + S+   +           V++K     + K L   + +
Sbjct: 317 LLIDGLLKGRNADAAKGLVHEMVSH-GINIKPYMYDCCICVMSKEGVMEKAKALFDGMIA 375

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           S  +  +  + +L++ Y    ++        E ++R  ++S  +Y  V+     +G    
Sbjct: 376 SGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDG 435

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A    +++I  G  PN   YT +I+  +   +   A+ V   +    I      Y  L+ 
Sbjct: 436 AYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLII 495

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKN 310
           G    +R DEA+S L EM ++G  P      A       G+I+ A+EF      DK +K 
Sbjct: 496 GLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFIS----GYIE-ASEFAS---ADKYVKE 547

Query: 311 VR 312
           +R
Sbjct: 548 MR 549



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 90/452 (19%), Positives = 172/452 (38%), Gaps = 67/452 (14%)

Query: 160 WNEYR---QRAKLLSTESYNIVMSVYAKTGKN-------FEAVETFR------------- 196
           W+ Y+   +R  +   ++Y++++  + + G         F+  + FR             
Sbjct: 206 WDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLK 265

Query: 197 -QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
             +I +G +P   TY V+I+ L  + +L+ A  +   +  + +   +  Y +L++G +  
Sbjct: 266 ESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKG 325

Query: 256 ERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
              D AK L++EM   G           +  M + G ++ A      M+    I   + Y
Sbjct: 326 RNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAY 385

Query: 315 E---DGSDDDEDENDDNNSGVRI----------AYGVQLKPWL---DPKALANTLDE--- 355
               +G   +++        V +           YG  +K      D     N + E   
Sbjct: 386 ASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIA 445

Query: 356 --WSPEVVSLLADAK-FVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
               P VV      K F+  +R     +VL+  K    A   FC+ +   G +      E
Sbjct: 446 SGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDE 505

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470
                 AR   VE+V+        +G++    T    I  Y  + +  +A K   + R  
Sbjct: 506 ------ARSFLVEMVE--------NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE- 550

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
           CG +      +L + L+    K  +  +A +    M+  GI+ D +T++ LM        
Sbjct: 551 CGVLPN---KVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDK 607

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
               +++F  +R  G+ PD + + VLI  + K
Sbjct: 608 VDDAEEIFREMRGKGIAPDVFSYGVLINGFSK 639



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 58/127 (45%), Gaps = 12/127 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +++Y++L++T  +  R  DA+ VL+EM   GI PD+  ++ L+   +        +    
Sbjct: 452 VVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLV 511

Query: 540 MVRQNGVEPDAYMFKVLIQA------------YCKYLSNSNLMPDAATKELLKKSLWKEG 587
            + +NG++P+A+ +   I              Y K +    ++P+      L     K+G
Sbjct: 512 EMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKG 571

Query: 588 RRKEAAA 594
           +  EA +
Sbjct: 572 KVIEACS 578



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 12/128 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +  Y+SL+  L+K KR  +A + L EM+ +G+ P+  T+   +  +    +     K   
Sbjct: 487 IFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVK 546

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEG 587
            +R+ GV P+  +   LI  YCK             + +  ++ DA T  +L   L+K  
Sbjct: 547 EMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKND 606

Query: 588 RRKEAAAV 595
           +  +A  +
Sbjct: 607 KVDDAEEI 614


>gi|42568859|ref|NP_178248.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546783|sp|Q9ZU29.2|PP139_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g01390
 gi|330250351|gb|AEC05445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 106/238 (44%), Gaps = 8/238 (3%)

Query: 68  DPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD 127
           D  I+   L++ P    A            F H+  T   +  +  ++ R   + ++   
Sbjct: 88  DSHIINRVLKAHPPMQKAWLFFNWAAQIKGFKHDHFTYTTMLDIFGEAGRIQSMYSVFHL 147

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           +     L  +V + +L+ W S+SGD++  +  W E R      +  SY   M +    G+
Sbjct: 148 MKEKGVLIDTVTYTSLIHWVSSSGDVDGAMRLWEEMRDNGCEPTVVSYTAYMKMLFADGR 207

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
             EA E +++++     PN  TYTV++E+LV  GK + AL++F  +  + ++       I
Sbjct: 208 VEEATEVYKEMLRSRVSPNCHTYTVLMEYLVATGKCEEALDIFFKMQEIGVQPDKAACNI 267

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDG---KFPGRAMRVALERMQEMGFIQGANEFLREM 302
           L+   +          +L  M+++G   ++P     + +E ++ +     +++ LRE+
Sbjct: 268 LIAKALKFGETSFMTRVLVYMKENGVVLRYP-----IFVEALETLKAAGESDDLLREV 320



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 91/198 (45%), Gaps = 6/198 (3%)

Query: 371 WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIA 430
           W + ++ +VL+     + AW FF W A   G+ HD +    ML I    G ++ +  +  
Sbjct: 87  WDSHIINRVLKAHPPMQKAWLFFNWAAQIKGFKHDHFTYTTMLDIFGEAGRIQSMYSVFH 146

Query: 431 KLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR-TLCGPISKFKLMLLYSSLLRT 489
            ++  G+ +   T   +I +   S   D A++ + + R   C P      ++ Y++ ++ 
Sbjct: 147 LMKEKGVLIDTVTYTSLIHWVSSSGDVDGAMRLWEEMRDNGCEPT-----VVSYTAYMKM 201

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
           L    R  +A  V +EM+ S + P+  T++ LM +    G  +    +F  +++ GV+PD
Sbjct: 202 LFADGRVEEATEVYKEMLRSRVSPNCHTYTVLMEYLVATGKCEEALDIFFKMQEIGVQPD 261

Query: 550 AYMFKVLIQAYCKYLSNS 567
                +LI    K+   S
Sbjct: 262 KAACNILIAKALKFGETS 279


>gi|413945438|gb|AFW78087.1| hypothetical protein ZEAMMB73_223692 [Zea mays]
          Length = 546

 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 106/238 (44%), Gaps = 4/238 (1%)

Query: 68  DPFIVTHALRSAPNADSALSIME-ALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           D   V   L++ P    A      A  ++  F H++ T  ++  +L ++ R   +  L+ 
Sbjct: 67  DSHTVARVLKTHPPLQKAFLFFRLATTASRTFRHDRFTYTSMIHLLGEAGRVPAMLRLLA 126

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
           ++  +     +  F  +M W + +GD++  +  W E + R++  +  SY   + +     
Sbjct: 127 EMLRAGIAPDAATFTTVMHWLARAGDVDGAMRVWAEMKARSRP-TVVSYTACIKILFDAR 185

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
           K  EA    R+++ EG  P  +TYTV+IEHL + GK ++ LE+   +    ++       
Sbjct: 186 KAEEARGVLREMVAEGLRPTCKTYTVLIEHLADTGKFEATLEIMDKMKEACVQPDKALCN 245

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLP 304
           ILV+             +L  M++   F      + LE +Q +     ++E LRE+ P
Sbjct: 246 ILVQKCSRAGETSVLTCILQYMKE--HFIVLRRPIFLEALQALKASGDSDELLREVNP 301



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 94/204 (46%), Gaps = 6/204 (2%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFF-CWVAYQPGYTHDVYALEKMLT 414
           WS     LL+     W +  V +VL+     + A+ FF         + HD +    M+ 
Sbjct: 51  WSAARPLLLSLPGLAWDSHTVARVLKTHPPLQKAFLFFRLATTASRTFRHDRFTYTSMIH 110

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI 474
           +L   G V  + RL+A++   G+    +T   ++ +   +   D A++ + + +    P 
Sbjct: 111 LLGEAGRVPAMLRLLAEMLRAGIAPDAATFTTVMHWLARAGDVDGAMRVWAEMKARSRPT 170

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
                ++ Y++ ++ L   ++  +A  VL EM+  G+ P  +T++ L+ H A  G  +  
Sbjct: 171 -----VVSYTACIKILFDARKAEEARGVLREMVAEGLRPTCKTYTVLIEHLADTGKFEAT 225

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQ 558
            ++   +++  V+PD  +  +L+Q
Sbjct: 226 LEIMDKMKEACVQPDKALCNILVQ 249


>gi|297807667|ref|XP_002871717.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317554|gb|EFH47976.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 533

 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 112/482 (23%), Positives = 191/482 (39%), Gaps = 59/482 (12%)

Query: 81  NADSALSI-MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS-KFLNVSV 138
           N D AL I + A KS+P F+HN  T H++   L++++    +++L+ D+ +S   +    
Sbjct: 59  NIDLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGE 118

Query: 139 N-FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           N F++L++ Y  +G  E  +  +          S  S N +++V  +  + F+ V    +
Sbjct: 119 NLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQN-QRFDLVHAMFK 177

Query: 198 VIDE--GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
              E  G  PN  T  ++++ L     ++SA +V   +P M +      Y  ++ G+V  
Sbjct: 178 NSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPAMGLVPNLVTYTTILGGYVAR 237

Query: 256 ERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
              + AK +L EM D G +P                    +     +L D   K  R+ E
Sbjct: 238 GDMESAKRVLEEMLDRGWYP--------------------DAITYTVLMDGYCKLGRFSE 277

Query: 316 DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALA---NTLDEWSPEVVSLLADAKFVWT 372
             +  D+ E ++      + YGV ++     K      N  DE        + D  F+  
Sbjct: 278 AATVMDDMEKNEIEPN-EVTYGVMIRALCKEKKSGEARNMFDE--------MLDRSFMPD 328

Query: 373 TRLVCKVL----RHFKSPETA--WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVD 426
           + L CKV+       K  E    W         P    D   L  ++  L + G V    
Sbjct: 329 SSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMP----DNALLSTLIHWLCKEGRVSEAR 384

Query: 427 RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKA-FHDD--RTLCGPISKFKLMLLY 483
           +L  +     +    +   LI    G+ +K +        DD     C P +       Y
Sbjct: 385 KLFDEFDKGSIPSLLTYNTLIA---GMCEKGELTEAGRLWDDMFERKCKPNA-----FTY 436

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           + L+  L+K     + + VLEEM+ SG  P+  TF  L       G E+   K+ SM   
Sbjct: 437 NVLIEGLSKNGNVKEGVRVLEEMLESGCFPNKTTFLILFEGLQKLGKEEDAIKIVSMAVM 496

Query: 544 NG 545
           NG
Sbjct: 497 NG 498



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 79/183 (43%), Gaps = 3/183 (1%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           V  AL      D A  +   +  N N   + + L  L   L K  R  E + L  +    
Sbjct: 335 VIDALCEDHKVDEACGLWRKMLKN-NCMPDNALLSTLIHWLCKEGRVSEARKLFDEFDKG 393

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
              ++ + +  L+      G+L      W++  +R    +  +YN+++   +K G   E 
Sbjct: 394 SIPSL-LTYNTLIAGMCEKGELTEAGRLWDDMFERKCKPNAFTYNVLIEGLSKNGNVKEG 452

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
           V    ++++ G  PN  T+ ++ E L  LGK + A+++ S + +M  K   + + + +  
Sbjct: 453 VRVLEEMLESGCFPNKTTFLILFEGLQKLGKEEDAIKIVS-MAVMNGKVDKESWELFLNK 511

Query: 252 FVG 254
           FVG
Sbjct: 512 FVG 514



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 135/309 (43%), Gaps = 56/309 (18%)

Query: 337 GVQLKPWLDPKAL----ANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHF 392
           G + +P +  + L    A +L ++  E  ++    + ++  RLV  + +  ++ + A   
Sbjct: 8   GTRFRPLIASRRLFSASAASLQQYCTEKPTIKPWPQRLFPKRLVSMITQQ-QNIDLALQI 66

Query: 393 FCWVAY-QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF- 450
           F +     PG+TH+      +L  L+R    + V+ L+A LR+    +      L ID  
Sbjct: 67  FLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGE-NLFIDLL 125

Query: 451 --YGISKKADAALKAF---------HDDRTLCGPIS------KFKL-------------- 479
             YG++ + +++++ F            R+L   ++      +F L              
Sbjct: 126 RNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGI 185

Query: 480 ---MLLYSSLLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ 535
              +   + L++ L K K D + A  VL+E+   G+VP++ T++ ++  +  +GD +  +
Sbjct: 186 TPNIFTCNLLVKALCK-KNDIESAYKVLDEIPAMGLVPNLVTYTTILGGYVARGDMESAK 244

Query: 536 KLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSL 583
           ++   +   G  PDA  + VL+  YCK             +  + + P+  T  ++ ++L
Sbjct: 245 RVLEEMLDRGWYPDAITYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRAL 304

Query: 584 WKEGRRKEA 592
            KE +  EA
Sbjct: 305 CKEKKSGEA 313


>gi|356527892|ref|XP_003532540.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g01390-like [Glycine max]
          Length = 545

 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 112/276 (40%), Gaps = 38/276 (13%)

Query: 298 FLREMLPD---KRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLD 354
           FLR ++P    + I N++  E     DE      N   +I   ++   W   +   N + 
Sbjct: 9   FLRNLVPSPSTRAISNMKKGEKLKLKDEHREYMRNVIGKIYKTLKYSSWESAEQELNNMS 68

Query: 355 EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT 414
                           W +  V +VL+     E AW FF W +   G+ HD Y    ML 
Sbjct: 69  --------------LRWDSYTVNQVLKSHPPMEKAWLFFNWASSLRGFKHDHYTYTTMLD 114

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI 474
           I    G            R   ++L   T   ++ +   S   D A++ +H  ++     
Sbjct: 115 IFGEAG------------RVSSIKLDSVTYTSMMHWLSSSGNVDQAMQMWHQIKS----- 157

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
              K ++ Y++ ++ L   +R  +A  V +EMI SG+ P+  T++ LM +    G  K  
Sbjct: 158 ---KTVVSYTAYIKILFHNRRLKEATRVYKEMISSGVAPNCHTYTVLMDYLIASGKCKEA 214

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM 570
            ++F  +++ G +PD     +LIQ  C  +  +  M
Sbjct: 215 LEIFEKMQEAGAQPDKAACNILIQR-CSKVGGTEFM 249



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 92/200 (46%), Gaps = 20/200 (10%)

Query: 36  YLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLL--DPFIVTHALRSAPNADSALSIMEALK 93
           Y+R   +I  I   ++ +S  S    LN+  L  D + V   L+S P  + A        
Sbjct: 40  YMR--NVIGKIYKTLKYSSWESAEQELNNMSLRWDSYTVNQVLKSHPPMEKAWLFFNWAS 97

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
           S   F H+  T   +  +  ++          G +SS K    SV + ++M W S+SG++
Sbjct: 98  SLRGFKHDHYTYTTMLDIFGEA----------GRVSSIKL--DSVTYTSMMHWLSSSGNV 145

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           +  +  W++ + +    +  SY   + +     +  EA   ++++I  G  PN  TYTV+
Sbjct: 146 DQAMQMWHQIKSK----TVVSYTAYIKILFHNRRLKEATRVYKEMISSGVAPNCHTYTVL 201

Query: 214 IEHLVNLGKLDSALEVFSAL 233
           +++L+  GK   ALE+F  +
Sbjct: 202 MDYLIASGKCKEALEIFEKM 221


>gi|297833654|ref|XP_002884709.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330549|gb|EFH60968.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 689

 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 95/438 (21%), Positives = 184/438 (42%), Gaps = 56/438 (12%)

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVI-DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
           ++YN+++ +  K  K FE    F   +  EG  P+  +Y+ +I  L   GKLD ALE+F 
Sbjct: 150 QTYNVLIKMSCKK-KEFEKARGFLNWMWKEGFKPDVFSYSTVINDLAKTGKLDDALELFD 208

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK-FPG-RAMRVALERMQEM 289
            +   R+      Y IL++GF+  +    A  L +++ +D   +P  +   + +  + + 
Sbjct: 209 EMSERRVAPDVTCYNILIDGFLKEKDHKMAMQLWDKLLEDSSVYPNVKTHNIMISGLSKC 268

Query: 290 GFIQGANEFLREMLPDKRIKNVRYYE-------DGSDDDEDENDDNNSGVR------IAY 336
           G +    +    M  ++R K++  Y        D  + D+ E+  N    R      + Y
Sbjct: 269 GRVDDCLKIWDRMKQNEREKDLYTYSSLIHGLCDEGNVDKAESVFNELVERKAFIDVVTY 328

Query: 337 GVQLKPWLDPKALANTLDEW-------SPEVVS-------LLADAKFVWTTRLVCKVL-- 380
              L  +     +  +L+ W       S  +VS       LL + K    T ++ +++  
Sbjct: 329 NTMLGGFCRCGKIKESLELWRIMEQRNSVNIVSYNILIKGLLENGKIDEAT-MIWRLMPA 387

Query: 381 RHFKSPETAWHFFCWVAYQPGYTH----------------DVYALEKMLTILARHGHVEL 424
           + + +  T +  F       GY +                DVYA   ++  L +   +E 
Sbjct: 388 KGYAADNTTYGIFIHGLCVNGYVNKALGVMQEVESKGGHLDVYAYASIIDCLCKKRRLEE 447

Query: 425 VDRLIAKLRSDGMRLPFSTIR-LIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLY 483
              L+ ++   G+ L       LI      S+ +DA+L      +  C P      ++ Y
Sbjct: 448 ASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLSDASLLMRGMGKNGCLPT-----VVSY 502

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           + L+  L +  +  +A   ++EM+ +G+ PD++T+S L+         ++  +L+    Q
Sbjct: 503 NILICGLCEAGKFGEASAFVKEMLENGLKPDLKTYSILLGGLCRDRKIELALELWHQFLQ 562

Query: 544 NGVEPDAYMFKVLIQAYC 561
           +G+EPD  M  +LI   C
Sbjct: 563 SGLEPDVMMHNILIHGLC 580



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 103/269 (38%), Gaps = 47/269 (17%)

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           V K+L+  K+P  A+  F      PGY H       +L  L+    V  V R++  +RS 
Sbjct: 13  VLKLLKSEKNPRAAFALFDSATRHPGYAHSAVVYHHILRRLSEARMVTHVGRIVELIRSQ 72

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL--CGP-ISKFKLML----------- 481
             +        +I  YG +   D AL  F   R +  C P I  +  +L           
Sbjct: 73  ECKCDEDVALSVIKTYGKNSMPDRALDVFKRMREIFGCEPGIRSYNTLLNAFVEAKQWVK 132

Query: 482 ------------------LYSSLLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLM 522
                              Y+ L++   K K++F+ A   L  M   G  PDV ++S ++
Sbjct: 133 VESLFAYFETAGVAPNLQTYNVLIKMSCK-KKEFEKARGFLNWMWKEGFKPDVFSYSTVI 191

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI-------------QAYCKYLSNSNL 569
              A  G      +LF  + +  V PD   + +LI             Q + K L +S++
Sbjct: 192 NDLAKTGKLDDALELFDEMSERRVAPDVTCYNILIDGFLKEKDHKMAMQLWDKLLEDSSV 251

Query: 570 MPDAATKELLKKSLWKEGRRKEAAAVEER 598
            P+  T  ++   L K GR  +   + +R
Sbjct: 252 YPNVKTHNIMISGLSKCGRVDDCLKIWDR 280



 Score = 38.9 bits (89), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 70/175 (40%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N    +AL   L +  R  +   L+  +  +  L   V++  L+     +G      +  
Sbjct: 463 NSHVCNALIGGLIRDSRLSDASLLMRGMGKNGCLPTVVSYNILICGLCEAGKFGEASAFV 522

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            E  +       ++Y+I++    +  K   A+E + Q +  G  P+   + ++I  L ++
Sbjct: 523 KEMLENGLKPDLKTYSILLGGLCRDRKIELALELWHQFLQSGLEPDVMMHNILIHGLCSV 582

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           GKLD A+ V + +           Y  L+EG+  V   + A  +   M   G  P
Sbjct: 583 GKLDDAMTVMANMEHRNCTANLVTYNTLMEGYFKVRDSNRATVIWGYMYKMGLQP 637


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 101/478 (21%), Positives = 188/478 (39%), Gaps = 64/478 (13%)

Query: 146 WYSTSGDLELVLSTWNEYRQRAKLLS-------------TESYNIVMSVYAKTGKNFEAV 192
            YSTS   +LV+ +++      K LS               SYN V+    ++ +N    
Sbjct: 130 CYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFA 189

Query: 193 E-TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
           E  F+++++    PN  TY ++I      G +D AL +F  +           Y  L++G
Sbjct: 190 ENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDG 249

Query: 252 FVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKN 310
           +  + + D+   LL  M   G  P   +  V +  +   G ++  +  L EM  ++R   
Sbjct: 250 YCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEM--NRR--- 304

Query: 311 VRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFV 370
                 G   DE           + Y   +K +         L   +  +   L  +   
Sbjct: 305 ------GYSLDE-----------VTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVIT 347

Query: 371 WTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRL 428
           +T+ +  +CK      +   A  F   +  + G   +      ++   ++ G++    R+
Sbjct: 348 YTSLIHSMCKA----GNMNRAMEFLDQMRVR-GLCPNERTYTTLVDGFSQKGYMNEAYRV 402

Query: 429 IAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD--DRTLCGPISKFKLMLLYSSL 486
           + ++  +G      T   +I+ + ++ K + A+    D  ++ L   +        YS++
Sbjct: 403 LREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVS------YSTV 456

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           L    +     +A+ V  EM+  GI PD  T+S L+  F  Q   K    L+  + + G+
Sbjct: 457 LSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGL 516

Query: 547 EPDAYMFKVLIQAYC------KYLSNSN------LMPDAATKELLKKSLWKEGRRKEA 592
            PD + +  LI AYC      K L   N      ++PD  T  +L   L K+ R +EA
Sbjct: 517 PPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREA 574



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 13/129 (10%)

Query: 480 MLLYSSLLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF 538
           +L Y+++L    + KR+   A NV +EM+ S + P+V T++ L+  F   G+  +   LF
Sbjct: 169 VLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLF 228

Query: 539 SMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKE 586
             +   G  P+   +  LI  YCK             ++   L P+  +  ++   L +E
Sbjct: 229 DKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCRE 288

Query: 587 GRRKEAAAV 595
           GR KE + V
Sbjct: 289 GRMKEVSFV 297



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 101/502 (20%), Positives = 192/502 (38%), Gaps = 52/502 (10%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L++ +  +G++++ L+ +++   +  L +  +YN ++  Y K  K  +  +  R +  +G
Sbjct: 211 LIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKG 270

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             PN  +Y V+I  L   G++     V + +           Y  L++G+     F +A 
Sbjct: 271 LEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQAL 330

Query: 263 SLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDD 321
            +  EM   G  P      +L   M + G +  A EFL +M       N R Y    D  
Sbjct: 331 VMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGF 390

Query: 322 EDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVS---LLADAKFVWTTRLVCK 378
             +   N      AY V L+   D        + +SP VV+   L+              
Sbjct: 391 SQKGYMNE-----AYRV-LREMND--------NGFSPSVVTYNALINGHCVTGKMEDAIA 436

Query: 379 VLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR 438
           VL   K              + G + DV +   +L+   R   V+   R+  ++   G++
Sbjct: 437 VLEDMK--------------EKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIK 482

Query: 439 LPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD 498
               T   +I  +   ++   A   + +   +  P  +F     Y++L+           
Sbjct: 483 PDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFT----YTALINAYCMEGDLEK 538

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A+ +  EM+  G++PDV T+S L+     Q   +  ++L   +      P    +  LI+
Sbjct: 539 ALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIE 598

Query: 559 AYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP-----SLALRGH 613
                 + SN+   +     L K    +G   EA  V E     N  P     ++ + GH
Sbjct: 599 ------NCSNIEFKSVVS--LIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGH 650

Query: 614 IWAVSSADLTRVHSIYRNSITS 635
             A    D+ + +++Y+  + S
Sbjct: 651 CRA---GDIRKAYTLYKEMVKS 669



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/214 (17%), Positives = 97/214 (45%), Gaps = 6/214 (2%)

Query: 67  LDPFIVT-----HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHEL 121
           L P ++T     H++  A N + A+  ++ ++       N+ T   L    ++    +E 
Sbjct: 341 LTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVR-GLCPNERTYTTLVDGFSQKGYMNEA 399

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
             ++ +++ + F    V +  L+  +  +G +E  ++   + +++       SY+ V+S 
Sbjct: 400 YRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSG 459

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
           + ++    EA+   R+++++G  P++ TY+ +I+      +   A +++  +  + +   
Sbjct: 460 FCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPD 519

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              Y  L+  +      ++A  L NEM + G  P
Sbjct: 520 EFTYTALINAYCMEGDLEKALQLHNEMVEKGVLP 553



 Score = 43.5 bits (101), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 61/148 (41%), Gaps = 15/148 (10%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  L+  Y   GDLE  L   NE  ++  L    +Y+++++   K  +  EA     ++ 
Sbjct: 523 YTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLF 582

Query: 200 DEGAIPNSRTYTVMIEHLVNL---------------GKLDSALEVFSALPLMRIKRTSKQ 244
            E ++P+  TY  +IE+  N+               G +  A +VF ++     K     
Sbjct: 583 YEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTA 642

Query: 245 YLILVEGFVGVERFDEAKSLLNEMRDDG 272
           Y I++ G        +A +L  EM   G
Sbjct: 643 YNIMIHGHCRAGDIRKAYTLYKEMVKSG 670



 Score = 42.0 bits (97), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 71/176 (40%), Gaps = 1/176 (0%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  L+  +S  G +        E        S  +YN +++ +  TGK  +A+     + 
Sbjct: 383 YTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMK 442

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           ++G  P+  +Y+ ++        +D AL V   +    IK  +  Y  L++GF    R  
Sbjct: 443 EKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTK 502

Query: 260 EAKSLLNEMRDDGKFPGRAMRVALERMQEM-GFIQGANEFLREMLPDKRIKNVRYY 314
           EA  L  EM   G  P      AL     M G ++ A +   EM+    + +V  Y
Sbjct: 503 EACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTY 558


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 108/560 (19%), Positives = 214/560 (38%), Gaps = 69/560 (12%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           ++  AL  +     AL++++ ++       N  T   L   L    +  + + L+G +  
Sbjct: 328 VLIKALCGSERKSEALNLVKEMEEK-GIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLE 386

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
              +   + +  L+  Y   G +E  L        R    +T +YN ++  Y K   + +
Sbjct: 387 KGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRNVH-K 445

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A+    ++++   +P+  TY  +I+     G  DSA  + S +    +      Y  +++
Sbjct: 446 AMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMID 505

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREML-----P 304
                +R +EA  L + +      P   M  AL +   + G +  A+  L +ML     P
Sbjct: 506 SLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLP 565

Query: 305 DKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLL 364
           +    N   +   +D    E         +     +K  L P    +T+      +  LL
Sbjct: 566 NSLTFNALIHGLCTDGKLKE-------ATLLEEKMVKIDLQPTVSTDTI-----LIHRLL 613

Query: 365 ADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVEL 424
            D  F    R   ++L     P                  D +     +    R G ++ 
Sbjct: 614 KDGDFDHAYRRFQQMLSSGTKP------------------DAHTYTTFIQTYCREGRLQD 655

Query: 425 VDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA---LKAFHDDRTLCGPISKFKLML 481
            + ++AK++ +G+     T   +I  YG   + ++A   LK  HD  T C P     L L
Sbjct: 656 AEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHD--TGCEPSQHTFLSL 713

Query: 482 LYSSLLRTLTKCK------------RDFD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
           +   L     K K             +FD  + +LE+M+  G+ P+ +++  LM      
Sbjct: 714 IKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEI 773

Query: 529 GDEKIVQKLFSMVRQ-NGVEPDAYMFKVLIQAYCKYLSNSNL------------MPDAAT 575
           G+ ++ +K+F  ++Q  G+ P   +F  L+   CK   ++              +P   +
Sbjct: 774 GNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLES 833

Query: 576 KELLKKSLWKEGRRKEAAAV 595
            ++L   L+K+G ++   +V
Sbjct: 834 CKILICRLYKKGEKERGTSV 853



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 105/519 (20%), Positives = 187/519 (36%), Gaps = 117/519 (22%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN +++ Y K G   EA +    +++ G  P+  TYT +I        LDSA +VF  +
Sbjct: 220 TYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEM 279

Query: 234 PLMRIKR-----------------------------------TSKQYLILVEGFVGVERF 258
           PL   +R                                   T + Y +L++   G ER 
Sbjct: 280 PLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERK 339

Query: 259 DEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDG 317
            EA +L+ EM + G  P      V ++ +     ++ A E L +ML    + NV      
Sbjct: 340 SEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNV------ 393

Query: 318 SDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVC 377
                           I Y   +  +     + + LD     VV L+        TR   
Sbjct: 394 ----------------ITYNALINGYCKRGMIEDALD-----VVELMESRNLRPNTRTYN 432

Query: 378 KVLRHF--KSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           ++++ +  ++   A      +  +     DV     ++    R G+ +   RL++ +   
Sbjct: 433 ELIKGYCKRNVHKAMGVLNKM-LERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDR 491

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR 495
           G+     T   +ID    SK+ + A   F D       I     +++Y++L+    K  +
Sbjct: 492 GLVPDPWTYTSMIDSLCKSKRVEEACDLF-DSLEQKDVIPN---VVMYTALIDGYCKAGK 547

Query: 496 DFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG--------DEKIVQ------------ 535
             +A  +LE+M+    +P+  TF+ L++     G        +EK+V+            
Sbjct: 548 VNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTI 607

Query: 536 ---------------KLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSN 568
                          + F  +  +G +PDA+ +   IQ YC+             +  + 
Sbjct: 608 LIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENG 667

Query: 569 LMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
           + PD  T   L K     GR   A  V +R       PS
Sbjct: 668 VSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPS 706



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 125/281 (44%), Gaps = 53/281 (18%)

Query: 322 EDENDDNNSGVRIAYGVQLKP-WLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVL 380
           EDE+D  +   R+ + +  KP W    +L + +   SP  VS L                
Sbjct: 54  EDESDPTSVPHRL-FSILSKPNWHKCPSLKSMVPAISPSHVSSLFSLDL----------- 101

Query: 381 RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP 440
                P+TA +F  W++  P Y H VY+   +LT+L  +G+V +V +             
Sbjct: 102 ----DPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFK------------- 144

Query: 441 FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK-------FKLML-LYSSLLRTLTK 492
              IRL++    I      A   F  D  LC  ++K       +KL++  Y++LL +L +
Sbjct: 145 ---IRLLM----IKSCDSVADTLFVLD--LCRKMNKDESFELKYKLIIGCYNTLLNSLAR 195

Query: 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYM 552
                +   V  EM+   + P++ T++ ++  +   G+ +   +  SM+ + G++PD + 
Sbjct: 196 FGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFT 255

Query: 553 FKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
           +  LI  YC+     +L  D+A K + K+   K  RR E A
Sbjct: 256 YTSLIMGYCQ---RKDL--DSAFK-VFKEMPLKGCRRNEVA 290



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 97/438 (22%), Positives = 174/438 (39%), Gaps = 28/438 (6%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           + +L+  Y    DL+     + E   +    +  +Y  ++       +  EA++ F ++ 
Sbjct: 256 YTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMK 315

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           D+   P  RTYTV+I+ L    +   AL +   +    IK     Y +L++      + +
Sbjct: 316 DDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLE 375

Query: 260 EAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGS 318
           +A+ LL +M + G  P      AL     + G I+ A + +  M       N R Y +  
Sbjct: 376 KARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELI 435

Query: 319 DDDEDENDDNNSGVR--------IAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFV 370
                 N     GV         +   V     +D +  +   D  +  ++SL+ D   V
Sbjct: 436 KGYCKRNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDS-AYRLLSLMNDRGLV 494

Query: 371 ---WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDR 427
              WT   +   L   K  E A   F  +  Q     +V     ++    + G V     
Sbjct: 495 PDPWTYTSMIDSLCKSKRVEEACDLFDSLE-QKDVIPNVVMYTALIDGYCKAGKVNEAHL 553

Query: 428 LIAKLRSDGMRLPFS-TIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSS- 485
           ++ K+ S    LP S T   +I  +G+    D  LK   +   L   + K  L    S+ 
Sbjct: 554 MLEKMLSKNC-LPNSLTFNALI--HGLC--TDGKLK---EATLLEEKMVKIDLQPTVSTD 605

Query: 486 --LLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
             L+  L K   DFD A    ++M+ SG  PD  T++  +  +  +G  +  + + + ++
Sbjct: 606 TILIHRLLK-DGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMK 664

Query: 543 QNGVEPDAYMFKVLIQAY 560
           +NGV PD + +  LI+ Y
Sbjct: 665 ENGVSPDLFTYSSLIKGY 682



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 92/464 (19%), Positives = 178/464 (38%), Gaps = 73/464 (15%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
            YN +++  A+ G   E  + + +++++   PN  TY  M+     +G ++ A +  S +
Sbjct: 185 CYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMI 244

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM------RDDGKFPGRAMRVALERMQ 287
               +      Y  L+ G+   +  D A  +  EM      R++  +      + +ER  
Sbjct: 245 VEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERR- 303

Query: 288 EMGFIQGANEFLREMLPDKRIKNVRYYE------DGSDDDEDENDDNNSGVRIAYGVQLK 341
               I  A +   +M  D     VR Y        GS+             R +  + L 
Sbjct: 304 ----IDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSE-------------RKSEALNLV 346

Query: 342 PWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPG 401
             ++ K +   +  ++  + SL +  K      L+ ++L                  + G
Sbjct: 347 KEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQML------------------EKG 388

Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK--KADA 459
              +V     ++    + G +E    ++  + S  +R    T   +I  Y      KA  
Sbjct: 389 LMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRNVHKAMG 448

Query: 460 ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR-DFD-AINVLEEMIFSGIVPDVQT 517
            L    + + L   ++       Y+SL+    +C+  +FD A  +L  M   G+VPD  T
Sbjct: 449 VLNKMLERKVLPDVVT-------YNSLIDG--QCRSGNFDSAYRLLSLMNDRGLVPDPWT 499

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LS 565
           ++ ++         +    LF  + Q  V P+  M+  LI  YCK             + 
Sbjct: 500 YTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKML 559

Query: 566 NSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA 609
           + N +P++ T   L   L  +G+ KEA  +EE+  KI+  P+++
Sbjct: 560 SKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVS 603



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 116/263 (44%), Gaps = 11/263 (4%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLL--DPFIVTHALRS---APNADSALSIMEALKSNP 96
           LID    +   +S+  L SL+NDR L  DP+  T  + S   +   + A  + ++L+   
Sbjct: 468 LIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQK- 526

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
           +   N     AL     K+ + +E   ++  + S   L  S+ F  L+    T G L+  
Sbjct: 527 DVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEA 586

Query: 157 LSTWNEYRQRAKLLSTESYN-IVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
            +   E   +  L  T S + I++    K G    A   F+Q++  G  P++ TYT  I+
Sbjct: 587 -TLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQ 645

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                G+L  A ++ + +    +      Y  L++G+  + R + A  +L  M D G  P
Sbjct: 646 TYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEP 705

Query: 276 GRAMRVAL-ERMQEM--GFIQGA 295
            +   ++L + + EM  G ++G 
Sbjct: 706 SQHTFLSLIKHLLEMKYGKVKGG 728



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 90/200 (45%), Gaps = 27/200 (13%)

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM---LLYS 484
           L+ ++   G++    T  ++ID      K + A       R L G + +  LM   + Y+
Sbjct: 345 LVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKA-------RELLGQMLEKGLMPNVITYN 397

Query: 485 SLLRTLTKCKRDF--DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           +L+     CKR    DA++V+E M    + P+ +T++ L+  +  +   K +  L  M+ 
Sbjct: 398 ALINGY--CKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRNVHKAMGVLNKMLE 455

Query: 543 QNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRK 590
           +  V PD   +  LI   C+             +++  L+PD  T   +  SL K  R +
Sbjct: 456 RK-VLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVE 514

Query: 591 EAAAVEERCEKINDVPSLAL 610
           EA  + +  E+ + +P++ +
Sbjct: 515 EACDLFDSLEQKDVIPNVVM 534


>gi|115447573|ref|NP_001047566.1| Os02g0644600 [Oryza sativa Japonica Group]
 gi|49387609|dbj|BAD25805.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|49388661|dbj|BAD25796.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113537097|dbj|BAF09480.1| Os02g0644600 [Oryza sativa Japonica Group]
          Length = 526

 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 102/467 (21%), Positives = 184/467 (39%), Gaps = 77/467 (16%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+Q +   G    V++ + +++     L    YNI M  Y K G   EAV+   ++   G
Sbjct: 76  LLQCFRKLGMTSEVIAYFLKFKDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKCGG 135

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+   YT +I      G++ +A +VF  +    I+     Y IL  GF       E  
Sbjct: 136 LTPDKIHYTCLINGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVF 195

Query: 263 SLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGAN----EFLREMLPDKRIKNVRYYEDG 317
            LL+ M D G  P      +A+     +GF +G N    E L  ++ +K I ++      
Sbjct: 196 DLLDRMADHGLEPNSLTYGIAI-----VGFCRGGNLSEAEVLFNVVEEKGIDHIEVMYS- 249

Query: 318 SDDDEDENDDNNSGVRIAYGVQLKPWLDPKAL--------ANTLDEWS-PEVVSLLADAK 368
                           +  G  L  W D   +         N +D +S  ++++ L    
Sbjct: 250 ---------------SMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVG 294

Query: 369 FVWTTRLVCKV-LRHFKSPETAWH-----FFC----------WV--AYQPGYTHDVYALE 410
            V     VCK+ L H   P+   +      +C          W     Q G + DV    
Sbjct: 295 NVQGASNVCKIMLEHNVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQRGLSIDVIVYT 354

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY----------GISKKADAA 460
            ++    + G ++   +L  ++ + G++       +++D +          GI+K+  + 
Sbjct: 355 ILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSF 414

Query: 461 LKAFHDDRTLCGPISKFKLMLL------YSSLLRTLTKCKRDF--DAINVLEEMIFSGIV 512
           L   + ++ L    S  K M +      Y+ L+    KCK ++  +A  + +EM+  G+ 
Sbjct: 415 LLRANHNKLL----SSMKDMQIEPDVPCYTVLID--GKCKAEYLVEARELFDEMLQKGLT 468

Query: 513 PDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
           PD   ++ L+  +  QG+    + L   +   G+EPD   F VL Q+
Sbjct: 469 PDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIEPDELTFSVLNQS 515



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 28/194 (14%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           +++  L+  Y  +GD++     +++  QR   +    Y I+M+ Y K G+  EA + F Q
Sbjct: 316 ISYSKLISIYCQNGDMDKAHLWFHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQ 375

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALE---------------------VFSALPLM 236
           + + G  P+   YTV+++     G L   L+                     + S++  M
Sbjct: 376 MTNLGIKPDVIAYTVLLD-----GHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDM 430

Query: 237 RIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGA 295
           +I+     Y +L++G    E   EA+ L +EM   G  P      AL       G I  A
Sbjct: 431 QIEPDVPCYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKA 490

Query: 296 NEFLREMLPDKRIK 309
            + L+EM+ DK I+
Sbjct: 491 EDLLQEMI-DKGIE 503



 Score = 47.0 bits (110), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 82/209 (39%), Gaps = 2/209 (0%)

Query: 107 ALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR 166
           A+ T       N  +K L+ ++         +++  L+  Y   G+++     + E  + 
Sbjct: 111 AMDTYCKNGNMNEAVK-LLNEMKCGGLTPDKIHYTCLINGYCLKGEMQNAQQVFEEMLKA 169

Query: 167 AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
                  +YNI+ S + K+G   E  +   ++ D G  PNS TY + I      G L  A
Sbjct: 170 NIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADHGLEPNSLTYGIAIVGFCRGGNLSEA 229

Query: 227 LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALER 285
             +F+ +    I      Y  +V G++     D A  L   +   G      +    +  
Sbjct: 230 EVLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLIND 289

Query: 286 MQEMGFIQGANEFLREMLPDKRIKNVRYY 314
           +  +G +QGA+   + ML    + +V  Y
Sbjct: 290 LCRVGNVQGASNVCKIMLEHNVVPDVISY 318



 Score = 45.8 bits (107), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 16/134 (11%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           ++Y+  + T  K     +A+ +L EM   G+ PD   ++ L+  + L+G+ +  Q++F  
Sbjct: 106 VIYNIAMDTYCKNGNMNEAVKLLNEMKCGGLTPDKIHYTCLINGYCLKGEMQNAQQVFEE 165

Query: 541 VRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGR 588
           + +  +EPD   + +L   +CK             +++  L P++ T  +      + G 
Sbjct: 166 MLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADHGLEPNSLTYGIAIVGFCRGGN 225

Query: 589 RKEAA----AVEER 598
             EA      VEE+
Sbjct: 226 LSEAEVLFNVVEEK 239



 Score = 42.4 bits (98), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 70/162 (43%), Gaps = 4/162 (2%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   + + +  +L    + G    V     K +  G+ L      + +D Y  +   + A
Sbjct: 65  GIETNCHIVSYLLQCFRKLGMTSEVIAYFLKFKDSGLHLDKVIYNIAMDTYCKNGNMNEA 124

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           +K  ++ +  CG ++  K+   Y+ L+          +A  V EEM+ + I PD+ T++ 
Sbjct: 125 VKLLNEMK--CGGLTPDKIH--YTCLINGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNI 180

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           L   F   G    V  L   +  +G+EP++  + + I  +C+
Sbjct: 181 LASGFCKSGLVMEVFDLLDRMADHGLEPNSLTYGIAIVGFCR 222



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 14/129 (10%)

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           S L+  L +      A NV + M+   +VPDV ++S L+  +   GD       F  + Q
Sbjct: 284 SKLINDLCRVGNVQGASNVCKIMLEHNVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQ 343

Query: 544 NGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRK- 590
            G+  D  ++ +L+  YCK             ++N  + PD     +L     KE  ++ 
Sbjct: 344 RGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQG 403

Query: 591 -EAAAVEER 598
            E  A E R
Sbjct: 404 WEGIAKERR 412


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 129/574 (22%), Positives = 226/574 (39%), Gaps = 98/574 (17%)

Query: 21  TRSFVRAPFTNKLALYLRRAQLIDSIRLAVR-SNSSNSLSSLLNDRLLDPFIVTHALRSA 79
           +R FV +P ++    + +        RL  R S  S S +S +N RL         + S 
Sbjct: 29  SRPFVLSPASSVSHHFTKLKATRSRKRLENRVSAVSKSEASGMNGRL-------QQIVST 81

Query: 80  PNADSALSIMEALKSNPNFSHNQSTLHALATV--LAKSQRNHELKTLI---------GDI 128
           PN D     ME+  S+PN  +   +    A+   L K  RN EL+  +         GDI
Sbjct: 82  PNGDLNGIGMES--SSPNGVNGSRSFEEFASNIHLRKLVRNGELEEGLKFLERMIYQGDI 139

Query: 129 SSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN 188
                    +   +L++ +  SG                 +    +YN+++  Y K+G+ 
Sbjct: 140 PDV------IACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEI 193

Query: 189 FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
            +A++   ++      P+  TY  ++  L + GKL  A+EV               Y IL
Sbjct: 194 DKALQVLERM---SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTIL 250

Query: 249 VEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKR 307
           +E         +A  LL+EMR  G  P      V +  + + G +  A +FL  M     
Sbjct: 251 IEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGC 310

Query: 308 IKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKP------WLDP-KALANTLDE-WSPE 359
             NV                      I + + L+       W+D  + LA+ L +  SP 
Sbjct: 311 QPNV----------------------ITHNIILRSMCSTGRWMDAERLLADMLRKGCSPS 348

Query: 360 VVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQP---GYTHDVY---ALEKML 413
           VV+      F+   RL+ + +   +           ++Y P   G+  +     A+E + 
Sbjct: 349 VVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLE 408

Query: 414 TILARHGHVELV--DRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTL 470
            +++R  + ++V  + L+  L  DG                   KADAA++  +      
Sbjct: 409 IMVSRGCYPDIVTYNTLLTALCKDG-------------------KADAAVEILNQLSSKG 449

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG- 529
           C P+     ++ Y++++  LTK  +   A  +LEEM   G+ PD+ T+S L+     +G 
Sbjct: 450 CSPV-----LITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGK 504

Query: 530 -DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            DE I  K+F  +    ++P A  +  ++   CK
Sbjct: 505 VDEAI--KIFHDMEGLSIKPSAVTYNAIMLGLCK 536



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 9/121 (7%)

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           LR L +     + +  LE MI+ G +PDV   + L+  F   G  +   ++  ++  +G 
Sbjct: 114 LRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGA 173

Query: 547 EPDAYMFKVLIQAYCK---------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
            PD   + VLI  YCK          L   ++ PD  T   + +SL   G+ KEA  V +
Sbjct: 174 VPDVITYNVLIGGYCKSGEIDKALQVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLD 233

Query: 598 R 598
           R
Sbjct: 234 R 234



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 61/141 (43%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+      G  +  +   N+   +       +YN V+    K GK   A E   +
Sbjct: 420 VTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEE 479

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +  +G  P+  TY+ ++  L   GK+D A+++F  +  + IK ++  Y  ++ G    ++
Sbjct: 480 MRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQ 539

Query: 258 FDEAKSLLNEMRDDGKFPGRA 278
              A   L  M + G  P +A
Sbjct: 540 TSRAIDFLAYMVEKGCKPTKA 560



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 15/125 (12%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y+ L+    K      A+ VLE M    + PDV T++ ++      G  K   ++  
Sbjct: 177 VITYNVLIGGYCKSGEIDKALQVLERM---SVAPDVVTYNTILRSLCDSGKLKEAMEVLD 233

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEG 587
              Q    PD   + +LI+A C              +      PD  T  +L   + KEG
Sbjct: 234 RQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEG 293

Query: 588 RRKEA 592
           R  EA
Sbjct: 294 RLDEA 298



 Score = 38.9 bits (89), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 35/179 (19%), Positives = 69/179 (38%), Gaps = 1/179 (0%)

Query: 74  HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKF 133
           H        D A+  +E + S   +  +  T + L T L K  +      ++  +SS   
Sbjct: 392 HGFCQEKKMDRAIEYLEIMVSRGCYP-DIVTYNTLLTALCKDGKADAAVEILNQLSSKGC 450

Query: 134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE 193
             V + +  ++   +  G  E       E R++       +Y+ ++      GK  EA++
Sbjct: 451 SPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIK 510

Query: 194 TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
            F  +      P++ TY  ++  L    +   A++  + +     K T   Y IL+EG 
Sbjct: 511 IFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILIEGI 569


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 93/433 (21%), Positives = 165/433 (38%), Gaps = 44/433 (10%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y I + V  + GK  EA    +++ D+G  P+  TYTV+I+ L    KLD A+ +F+ +
Sbjct: 266 TYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKM 325

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFI 292
                K     Y+ L++ F      D+ + +  EM  DG  P      + +  + + G I
Sbjct: 326 KSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRI 385

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
             A + L  M     + N+                        Y   +   L    L + 
Sbjct: 386 NEAFDLLDTMRKQGVLPNLH----------------------TYNTLISGLLRANRLDDA 423

Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
           LD +S   +  L      +T  L+         P  A   F  +  + G   ++ A    
Sbjct: 424 LDLFSN--MESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKAR-GIAPNIVACNAS 480

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLC 471
           L  LA  G +     +  +L+S G+     T  +++  Y    + D A+K   +  +  C
Sbjct: 481 LYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQC 540

Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
            P      +++ +SL+ TL K  R  +A  +   M    + P V T++ L+     +G  
Sbjct: 541 EPD-----VIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQI 595

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELL 579
           +   +LF  +  +G  P+   F  L+   CK             ++  N  PD  T   +
Sbjct: 596 QKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTI 655

Query: 580 KKSLWKEGRRKEA 592
                K+ + K A
Sbjct: 656 IHGFIKQNQIKNA 668



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 79/396 (19%), Positives = 151/396 (38%), Gaps = 34/396 (8%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A  IM+ +  +     +  T   L   L  +++  +   L   + SS      V ++ 
Sbjct: 281 DEAYRIMKRMDDD-GCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVT 339

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  +S  G L+ V   W E           ++ I+++   K G+  EA +    +  +G
Sbjct: 340 LLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQG 399

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +PN  TY  +I  L+   +LD AL++FS +  + ++ T+  Y++L++         +A 
Sbjct: 400 VLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKAL 459

Query: 263 SLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDD 321
               +M+  G  P   A   +L  + EMG +  A     E+                   
Sbjct: 460 ETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNEL------------------- 500

Query: 322 EDENDDNNSGV---RIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCK 378
                  +SG+    + Y + +K +     +   +   S E+  +  +   +    L+  
Sbjct: 501 ------KSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLS-EMSKVQCEPDVIVINSLI-D 552

Query: 379 VLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR 438
            L      E AW  FC +  +      V     +L  L + G ++   +L   +   G  
Sbjct: 553 TLYKAGRVEEAWQMFCRME-EMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCS 611

Query: 439 LPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGP 473
               T   ++D    + + D ALK F+   T+ C P
Sbjct: 612 PNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRP 647



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 83/175 (47%)

Query: 101  NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
            N  T + + + L KS R  +   L  ++ S  F      F  L+     SG L+     +
Sbjct: 859  NTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMF 918

Query: 161  NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            +         ++  YNI+++ Y K G    A E F++++ EG  P+ ++YT++++ L   
Sbjct: 919  DGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIA 978

Query: 221  GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            G++D AL  F  L    +      Y +++ G    +R +EA SL +EM++ G  P
Sbjct: 979  GRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVP 1033



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 110/597 (18%), Positives = 226/597 (37%), Gaps = 92/597 (15%)

Query: 85   ALSIMEALKSN---PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
            AL   E +K+    PN     ++L++LA +     R  E K +  ++ SS     SV + 
Sbjct: 458  ALETFEKMKARGIAPNIVACNASLYSLAEM----GRLGEAKAMFNELKSSGLAPDSVTYN 513

Query: 142  NLMQWYSTSGDLE------------------LVLST--------------WNEYRQRAKL 169
             +M+ YS  G ++                  +V+++              W  + +  ++
Sbjct: 514  MMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEM 573

Query: 170  ---LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
                +  +YNI+++   K G+  +AV+ F  +   G  PN+ T+  +++ L    ++D A
Sbjct: 574  NLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLA 633

Query: 227  LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERM 286
            L++F  +  M  +     +  ++ GF+   +   A  L ++M+   +     +   L  +
Sbjct: 634  LKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMKKLLRPDHVTLCTLLPGV 693

Query: 287  QEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDP 346
             + G I+ A           RI    +Y+ GS+ D    +D   G+    G +       
Sbjct: 694  IKSGQIEDA----------FRITEDFFYQVGSNIDRSFWEDVMGGILTEAGTEKAILFGE 743

Query: 347  KALANTL---DEWSPEVVSLLADAK--------FVWTTR------------LVCKVLRHF 383
            + +   +   D     ++ +L   K        FV  T+            L+       
Sbjct: 744  RLVCRAICKDDSVLIPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEV 803

Query: 384  KSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFST 443
             + E AW+ F  +    G   D +    ++    + G +  +  L  ++ + G +    T
Sbjct: 804  HNVEVAWNLFEEMK-SAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTIT 862

Query: 444  IRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVL 503
              ++I     S + D A+  +++   + G  S       +  L+  L K  R  DA  + 
Sbjct: 863  YNMVISNLVKSNRLDKAMDLYYN--LVSGDFSPTPCT--FGPLIDGLLKSGRLDDAHEMF 918

Query: 504  EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC-- 561
            + M+  G  P+   ++ L+  +   G      + F  + + G+ PD   + +L+   C  
Sbjct: 919  DGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIA 978

Query: 562  ----------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
                      + L  + L PD     L+   L +  R +EA ++    +    VP L
Sbjct: 979  GRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDL 1035



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 108/556 (19%), Positives = 204/556 (36%), Gaps = 87/556 (15%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           V   L S  +   AL   +++   PN  H   T + +  +L +  R  E    + D+   
Sbjct: 94  VLGVLHSISDPIHALFYFKSVGELPNVVHTTETCNHMLEIL-RVHRRVEDMAFVFDLMQR 152

Query: 132 KFLNVSVN-FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           + +  +V+ ++ + +     G L    S   + R+   +L+  SYN ++    ++G   E
Sbjct: 153 QIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHFLLQSGFCKE 212

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A+E +R+++ EG  P                    +L+ FSAL +   KR + + ++   
Sbjct: 213 ALEVYRRMVSEGLKP--------------------SLKTFSALMVASGKRRNIKTVM--- 249

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIK 309
                        LL EM   G  P      + +  +   G I  A   ++ M       
Sbjct: 250 ------------GLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRM------- 290

Query: 310 NVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF 369
                          +DD      + Y V +      + L + +  ++    S     K 
Sbjct: 291 ---------------DDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKV 335

Query: 370 VWTTRLV----CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELV 425
            + T L     C    H    E  W          GY  DV     ++  L + G +   
Sbjct: 336 TYVTLLDKFSDCG---HLDKVEKIW----TEMEADGYAPDVVTFTILVNALCKAGRINEA 388

Query: 426 DRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSS 485
             L+  +R  G+     T   +I     + + D AL  F +  +L    + +  +LL   
Sbjct: 389 FDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILL--- 445

Query: 486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
            +    K      A+   E+M   GI P++   +  +Y  A  G     + +F+ ++ +G
Sbjct: 446 -IDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSG 504

Query: 546 VEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
           + PD+  + ++++ Y K             +S     PD      L  +L+K GR +EA 
Sbjct: 505 LAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAW 564

Query: 594 AVEERCEKINDVPSLA 609
            +  R E++N  P++ 
Sbjct: 565 QMFCRMEEMNLAPTVV 580



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 74/147 (50%), Gaps = 10/147 (6%)

Query: 417  ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK 476
             + GHV+       ++  +G+R    +  +++D   I+ + D AL  F         + +
Sbjct: 941  GKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEK-------LKQ 993

Query: 477  FKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
              L   ++ Y+ ++  L + +R  +A+++  EM   GIVPD+ T++ L+ +  + G  + 
Sbjct: 994  AGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEE 1053

Query: 534  VQKLFSMVRQNGVEPDAYMFKVLIQAY 560
              K++  ++  G++P+ + +  LI+ Y
Sbjct: 1054 AGKIYEELQFIGLKPNVFTYNALIRGY 1080



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 95/511 (18%), Positives = 199/511 (38%), Gaps = 66/511 (12%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+ +AL  A   + A  +++ ++       N  T + L + L ++ R  +   L  ++ S
Sbjct: 374 ILVNALCKAGRINEAFDLLDTMRKQGVLP-NLHTYNTLISGLLRANRLDDALDLFSNMES 432

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                 +  ++ L+ ++  SG     L T+ + + R    +  + N  +   A+ G+  E
Sbjct: 433 LGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGE 492

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A   F ++   G  P+S TY +M++    +G++D A+++ S +  ++ +        L++
Sbjct: 493 AKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLID 552

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIK 309
                 R +EA  +   M +    P      + L  + + G IQ A +    M       
Sbjct: 553 TLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSP 612

Query: 310 NVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF 369
           N   + +   D   +ND+ +  +++ Y +             T     P+V++       
Sbjct: 613 NTITF-NTLLDCLCKNDEVDLALKMFYKM-------------TTMNCRPDVLTF------ 652

Query: 370 VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
                ++   ++  +     W F              + ++K+L    R  HV L   L 
Sbjct: 653 ---NTIIHGFIKQNQIKNAIWLF--------------HQMKKLL----RPDHVTLCTLLP 691

Query: 430 AKLRSDGMRLPFSTIRLIIDFY-----------------GISKKADAALKAFHDDRTLCG 472
             ++S  +   F   R+  DF+                 GI  +A         +R +C 
Sbjct: 692 GVIKSGQIEDAF---RITEDFFYQVGSNIDRSFWEDVMGGILTEAGTEKAILFGERLVCR 748

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS-GIVPDVQTFSGLMYHFALQGDE 531
            I K   +L+   +++ L K K+   A NV  +     G+ P ++ ++ L+  F    + 
Sbjct: 749 AICKDDSVLI--PIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNV 806

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           ++   LF  ++  G  PD + +  LI A+ K
Sbjct: 807 EVAWNLFEEMKSAGCAPDTFTYNSLIDAHGK 837



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 79/170 (46%), Gaps = 5/170 (2%)

Query: 387  ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
            +TA  FF  +  + G   D+ +   ++ IL   G V+       KL+  G+        L
Sbjct: 947  DTACEFFKRMV-KEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNL 1005

Query: 447  IIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
            +I+  G S++ + AL  FH+ +   G +     +  Y+SL+  L       +A  + EE+
Sbjct: 1006 MINGLGRSQRTEEALSLFHEMQNR-GIVPD---LYTYNSLILNLGIVGMIEEAGKIYEEL 1061

Query: 507  IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
             F G+ P+V T++ L+  + L G+ ++   ++  +   G +P+   F  L
Sbjct: 1062 QFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQL 1111


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 111/486 (22%), Positives = 187/486 (38%), Gaps = 74/486 (15%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT---LIGDISSSKFLNVSVNF 140
           S + ++E++ S       +  +    T++    R H+++T   ++ ++SS         F
Sbjct: 68  SKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTF 127

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
             LMQ +   G +E  L       +     +  + N++++ Y K G+  +A+   +Q I 
Sbjct: 128 TTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIA 187

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
           +G  P+  TY   +  L     +  AL+V   +           Y I+V       + +E
Sbjct: 188 DGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 247

Query: 261 AKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDD 320
           AK +LN+M D                             R  LPD    N          
Sbjct: 248 AKGILNQMVD-----------------------------RGCLPDITTFNTLI------- 271

Query: 321 DEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVL 380
                        +  G +L+  LD  A   T+   SP+V +      F      +CKV 
Sbjct: 272 -----------AALCTGNRLEEALD-LARQVTVKGVSPDVYT------FNILINALCKV- 312

Query: 381 RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP 440
                P  A   F  +    G T D      ++  L   G +     L+  + S G   P
Sbjct: 313 ---GDPHLALRLFEEMK-NSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG--CP 366

Query: 441 FSTI--RLIIDFYGISKKA--DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
            STI    IID  G+ KK   + A + F D   L G IS+  +   +++L+  L K K+ 
Sbjct: 367 RSTITYNTIID--GLCKKMRIEEAEEVF-DQMDLQG-ISRNAIT--FNTLIDGLCKDKKI 420

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
            DA  ++ +MI  G+ P+  T++ ++ H+  QGD K    +   +  NG E D   +  L
Sbjct: 421 DDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTL 480

Query: 557 IQAYCK 562
           I   CK
Sbjct: 481 INGLCK 486



 Score = 45.4 bits (106), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 48/233 (20%), Positives = 93/233 (39%), Gaps = 2/233 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+ +AL    +   AL + E +K N   + ++ T + L   L    +  +   L+ D+ S
Sbjct: 304 ILINALCKVGDPHLALRLFEEMK-NSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMES 362

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           +     ++ +  ++        +E     +++   +    +  ++N ++    K  K  +
Sbjct: 363 TGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDD 422

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A E   Q+I EG  PN+ TY  ++ H    G +  A ++   +     +     Y  L+ 
Sbjct: 423 AFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLIN 482

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREM 302
           G     R   A  +L  MR  G  P  +A    L+ +     I+ A    REM
Sbjct: 483 GLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREM 535


>gi|242094006|ref|XP_002437493.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
 gi|241915716|gb|EER88860.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
          Length = 1039

 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 134/597 (22%), Positives = 228/597 (38%), Gaps = 85/597 (14%)

Query: 67  LDPFIVT-HA--LRSAPNAD----SALSIMEALKSNPNFSHNQSTLHALATVLAK--SQR 117
           L PF+   H   L  AP A     +AL+  E +   P F H  ++  AL  +LA+  +  
Sbjct: 48  LAPFVTAAHVADLFRAPVAPLDPATALAFFEWVARRPGFRHTAASHAALLQLLARRRAPA 107

Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLST------------------ 159
           N++ K ++  IS S         ++ +Q    +G   L LS                   
Sbjct: 108 NYD-KLVVSMISCSGTAEDMREAVDAIQAIRRAGGKRLALSPKCYNLALRSLLRFDMTEH 166

Query: 160 ----WNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
               +++  Q   L  T +YN ++  Y K G    A   FR + + G   ++ T   ++ 
Sbjct: 167 MGKLYSQLVQEGLLPDTVTYNTMIMAYCKEGSLAIAHRYFRLLRESGMEMDTYTCNALLL 226

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                G L  A  +   +PLM  +R    Y IL++G        EA  LL  M  DG  P
Sbjct: 227 GYCRTGDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLLMMLQDGCSP 286

Query: 276 ---------------GRA--MRVALERMQEMGFIQGA---NEFLREMLPDKRIKN---VR 312
                          GR    RV L+ M   G +      N  +       R+K+   ++
Sbjct: 287 NLHTYTLLIRGLCKEGRIHDARVLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDALGIK 346

Query: 313 YYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDE-WSPEVVSLLADAKFVW 371
              +G+  + D+   N+    +  G   KP    + L   +   +SP V++         
Sbjct: 347 TLMEGNGCNPDDWTYNSLIHGLCGG---KPDEAEELLNGAIARGFSPTVITFTNIINGYC 403

Query: 372 TTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAK 431
               +   LR  KS          +        D+ A   ++++L +   ++     + +
Sbjct: 404 KAEKIDDALR-VKS----------IMISSKCKLDLQAYGVLISVLIKKHRLKEAKDTLNE 452

Query: 432 LRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH-DDRTLCGPISKFKLMLLYSSLLRTL 490
           + ++G+         IID Y    K  AAL+ F   +   C P +       YSSL+  L
Sbjct: 453 IFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKLTEHEGCRPNA-----WTYSSLIYGL 507

Query: 491 TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA 550
            + ++   A+ ++ +M   GI P V T++ L+     + +     +LF M+ QNG+ PD 
Sbjct: 508 IQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDE 567

Query: 551 YMFKVLIQAYCK---------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
             + VL  A CK         +L    ++    T   L     K G  + AAA+ E+
Sbjct: 568 QAYNVLTDALCKSGRAEEAYSFLVKKGVVLTKVTYTSLVDGFSKAGNTEFAAALIEK 624



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 103/471 (21%), Positives = 184/471 (39%), Gaps = 46/471 (9%)

Query: 99  SHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLS 158
           S N  T   L   L K  R H+ + L+ ++     +     +  ++  Y  SG L+  L 
Sbjct: 285 SPNLHTYTLLIRGLCKEGRIHDARVLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDALG 344

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
                          +YN ++      GK  EA E     I  G  P   T+T +I    
Sbjct: 345 IKTLMEGNGCNPDDWTYNSLIHGLCG-GKPDEAEELLNGAIARGFSPTVITFTNIINGYC 403

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA 278
              K+D AL V S +   + K   + Y +L+   +   R  EAK  LNE+  +G  P   
Sbjct: 404 KAEKIDDALRVKSIMISSKCKLDLQAYGVLISVLIKKHRLKEAKDTLNEIFANGLSPNVV 463

Query: 279 MRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYG 337
           +  ++ +   ++G +  A E  +    +    N   Y                   + YG
Sbjct: 464 IYTSIIDAYCKVGKVGAALEVFKLTEHEGCRPNAWTYSS-----------------LIYG 506

Query: 338 -VQLKPWLDPKALANTLDE--WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFC 394
            +Q +      AL   + E   +P V++        +TT +  +  +H    + A+  F 
Sbjct: 507 LIQDQKLHKAMALITKMQEDGITPGVIT--------YTTLIQGQCKKH--EFDNAFRLF- 555

Query: 395 WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS 454
            +  Q G T D  A   +   L + G  E     + K    G+ L   T   ++D  G S
Sbjct: 556 EMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVK---KGVVLTKVTYTSLVD--GFS 610

Query: 455 KKADAALKAFHDDRTL---CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
           K  +    A   ++ +   C   S       YS LL+ L K K+  +A+++L++M   G+
Sbjct: 611 KAGNTEFAAALIEKMVNEGCKADSH-----TYSVLLQALCKQKKLNEALSILDQMTLRGV 665

Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
             ++  ++ ++     +G     + +F+ +  +G +P A  + V I +YCK
Sbjct: 666 KGNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSAITYTVFISSYCK 716



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D+A  + E ++ N   + ++   + L   L KS R  E  + +        +   V + +
Sbjct: 549 DNAFRLFEMMEQN-GLTPDEQAYNVLTDALCKSGRAEEAYSFL---VKKGVVLTKVTYTS 604

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  +S +G+ E   +   +         + +Y++++    K  K  EA+    Q+   G
Sbjct: 605 LVDGFSKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQALCKQKKLNEALSILDQMTLRG 664

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
              N   YT++I  ++  GK D A  +F+ +     K ++  Y + +  +  + R +EA 
Sbjct: 665 VKGNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSAITYTVFISSYCKIGRIEEAG 724

Query: 263 SLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREML 303
            L+ EM  +G  P      V +     MG++  A   L+ M+
Sbjct: 725 HLIGEMERNGVAPDVVTYNVFINGCGHMGYMDCAFSTLKRMI 766



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 55/133 (41%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+Q       L   LS  ++   R    +  +Y I++S   K GK+  A   F ++I  G
Sbjct: 640 LLQALCKQKKLNEALSILDQMTLRGVKGNIVAYTIIISEMIKEGKHDHAKSMFNEMISSG 699

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P++ TYTV I     +G+++ A  +   +    +      Y + + G   +   D A 
Sbjct: 700 HKPSAITYTVFISSYCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFINGCGHMGYMDCAF 759

Query: 263 SLLNEMRDDGKFP 275
           S L  M D    P
Sbjct: 760 STLKRMIDASCEP 772



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 40/214 (18%), Positives = 84/214 (39%), Gaps = 17/214 (7%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           ++  AL      + ALSI++ +        N      + + + K  ++   K++  ++ S
Sbjct: 639 VLLQALCKQKKLNEALSILDQMTLR-GVKGNIVAYTIIISEMIKEGKHDHAKSMFNEMIS 697

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           S     ++ +   +  Y   G +E       E  +        +YN+ ++     G    
Sbjct: 698 SGHKPSAITYTVFISSYCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFINGCGHMGYMDC 757

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLG----------------KLDSALEVFSALP 234
           A  T +++ID    PN  TY ++++H + +                 KLD+  ++   + 
Sbjct: 758 AFSTLKRMIDASCEPNYWTYWLLLKHFLKMSLANAHYVDTSGMWNWIKLDTVWQLLERMV 817

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
              +  T+  Y  ++ GF    R +EA  LL+ M
Sbjct: 818 KHGLNPTAVTYSSIIAGFCKATRLEEACVLLDHM 851


>gi|125537003|gb|EAY83491.1| hypothetical protein OsI_38705 [Oryza sativa Indica Group]
          Length = 696

 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 97/439 (22%), Positives = 177/439 (40%), Gaps = 50/439 (11%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN ++    + G   EAV   RQ+  EG  PN  TYT++++   N G+++ A  +   +
Sbjct: 225 TYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKM 284

Query: 234 PLMRIKRTSKQYLILVEG-FVGVERFDEAKSLLNE-MRDDGKFPGRAMRVALERMQEMGF 291
               +  +   Y  LV G F  +ER D+A  +L++ +  +      A    L  + +   
Sbjct: 285 KEKGVAPSEATYRTLVHGVFRCLER-DKAYRMLSDWLGHETSLHPSACHTMLYCLSKKDM 343

Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALAN 351
            + A EF       KR+    Y  D            ++   I     LK  L+   L  
Sbjct: 344 AKEAVEFA------KRMSARGYLLD------------STAFGIVMSCSLK-CLEVSDLCE 384

Query: 352 TLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEK 411
            LD +     +   D        +V K L + K+   A H+   +  + G    V +   
Sbjct: 385 LLDSFIKNGGNPGFDVYI-----MVIKSLLNCKNFSKANHYLGHMVLK-GLLSSVMSYNM 438

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           ++    + G V+  + ++ +++  G      T   +I  Y       + L   H+ + + 
Sbjct: 439 VIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGY-------SKLGNVHNAKVVL 491

Query: 472 GPISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
             + +   M   + ++SL+  L    +  DA    EEM   G+ P+ QT++ LM+     
Sbjct: 492 KMLMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSA 551

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATK 576
           G       L + ++ +GV PDAY F  LI ++C+             +    ++PD+ T 
Sbjct: 552 GHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTY 611

Query: 577 ELLKKSLWKEGRRKEAAAV 595
             L K+L  E R  +A  +
Sbjct: 612 NSLIKALCDERRVNKAKEI 630



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 83/182 (45%), Gaps = 4/182 (2%)

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
            NP F      + +L      S+ NH L    G +     L+  +++  ++  +  +G +
Sbjct: 394 GNPGFDVYIMVIKSLLNCKNFSKANHYL----GHMVLKGLLSSVMSYNMVIDCFVKAGAV 449

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           +       E + +  L +  ++N ++S Y+K G    A    + +++ G +P+  T+T +
Sbjct: 450 DKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMPDIITFTSL 509

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           I+ L N  +LD A   F  +    ++  ++ Y +L+         ++A  LLN+M+ DG 
Sbjct: 510 IDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGV 569

Query: 274 FP 275
            P
Sbjct: 570 TP 571



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 53/108 (49%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           ST  YN +++   + G    A   F+Q+  +G  P+  TY  ++  +   G +D A+ + 
Sbjct: 187 STAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDRFTYNSLVHGVCRRGIVDEAVRLV 246

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA 278
             +    I+     Y +LV+GF    R +EA  +L++M++ G  P  A
Sbjct: 247 RQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEKGVAPSEA 294



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/209 (19%), Positives = 95/209 (45%), Gaps = 8/209 (3%)

Query: 58  LSSLLN-DRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQ 116
           LSS+++ + ++D F+   A+      D A  I++ ++ +  F  N  T + L +  +K  
Sbjct: 430 LSSVMSYNMVIDCFVKAGAV------DKAEEIVKEMQ-DKGFLPNLVTFNTLISGYSKLG 482

Query: 117 RNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYN 176
             H  K ++  +    F+   + F +L+     +  L+     + E  +     + ++YN
Sbjct: 483 NVHNAKVVLKMLMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYN 542

Query: 177 IVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM 236
           ++M      G   +A++   ++  +G  P++ ++  +I     + K+D A ++F+ +   
Sbjct: 543 VLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRF 602

Query: 237 RIKRTSKQYLILVEGFVGVERFDEAKSLL 265
            +   S  Y  L++      R ++AK +L
Sbjct: 603 GVVPDSYTYNSLIKALCDERRVNKAKEIL 631



 Score = 47.0 bits (110), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 95/234 (40%), Gaps = 29/234 (12%)

Query: 345 DPKALANTL--DEWSPEVVSLLADAKFVWTTRLVCKVLR------HFKSPETAWHFFCWV 396
           DP   A+ L  D+W P + +  A A      R V + LR          P      + W 
Sbjct: 48  DPARAASILAEDDWFPRLNAEFAAALPRLGPRFVVRALRAAAEREGVGEPLLCVRLYVWA 107

Query: 397 A-YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455
           + +   +  D      ++  L R G V L  RL+A++R  G  +    +  +++ +G   
Sbjct: 108 SRFGAHFARDGGVRRALVGALWRRGPVVLSGRLVAEVRGCGCEVSEELVCALVESWGRLG 167

Query: 456 KADAALKAFHDDRTLCGPISKFKLML-----LYSSLLRTLTKCKRDFDAINVLEEMIFSG 510
            A  A + F         +   +L L     +Y++L+    +      A    ++M   G
Sbjct: 168 LARYAHEVF---------VQMPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQMPADG 218

Query: 511 IVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ---NGVEPDAYMFKVLIQAYC 561
             PD  T++ L++    +G   IV +   +VRQ    G+ P+ + + +L+  +C
Sbjct: 219 CRPDRFTYNSLVHGVCRRG---IVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFC 269



 Score = 46.6 bits (109), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 54/256 (21%), Positives = 110/256 (42%), Gaps = 25/256 (9%)

Query: 39  RAQLIDSIRLA-VRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPN 97
           R  L+DS     V S S   L       LLD FI        P  D  + ++++L +  N
Sbjct: 357 RGYLLDSTAFGIVMSCSLKCLEVSDLCELLDSFIKNGG---NPGFDVYIMVIKSLLNCKN 413

Query: 98  FSH-NQSTLHALATVLAKSQRNHEL--------------KTLIGDISSSKFLNVSVNFMN 142
           FS  N    H +   L  S  ++ +              + ++ ++    FL   V F  
Sbjct: 414 FSKANHYLGHMVLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNT 473

Query: 143 LMQWYSTSGDL---ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           L+  YS  G++   ++VL    E+     +++   +  ++     T +  +A   F ++ 
Sbjct: 474 LISGYSKLGNVHNAKVVLKMLMEHGFMPDIIT---FTSLIDGLCNTHQLDDAFVCFEEMA 530

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           + G  PN++TY V++  L + G ++ A+++ + + +  +   +  +  L+  F  + + D
Sbjct: 531 EWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVD 590

Query: 260 EAKSLLNEMRDDGKFP 275
           +A+ + N+M   G  P
Sbjct: 591 KAEDIFNDMVRFGVVP 606


>gi|224107773|ref|XP_002333469.1| predicted protein [Populus trichocarpa]
 gi|222836989|gb|EEE75382.1| predicted protein [Populus trichocarpa]
          Length = 1048

 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 110/512 (21%), Positives = 203/512 (39%), Gaps = 72/512 (14%)

Query: 162 EYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL---- 217
           E  +R   +  + Y I+++ Y +  +  +A++ F+ + + G +P + TYT +++HL    
Sbjct: 403 EIMKRKDFVDGKVYGIIINGYLRRNELSKALDLFQSMKEFGHLPTTSTYTELMQHLFRSN 462

Query: 218 -------------------------------VNLGKLDSALEVFSALPLMRIKRTSKQYL 246
                                          V    +  A EVF  +    IK T K Y 
Sbjct: 463 EYQKCCELYDEMLERGVEIDSVAVMAIVAGHVRQDHISEAWEVFETMEDKGIKPTWKSYS 522

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM----RVALERMQEMGFIQGANEFLR-- 300
           I ++    V R DE   +L +M+    F    +       +ER  EM  I+   +  R  
Sbjct: 523 IFIKELCKVSRTDEIIKVLGKMQASKMFICDEIFEWVISCMERKGEMDNIRKVKQMHRIC 582

Query: 301 --EMLPDKRIKNVRYYEDGSDDDEDEND------DNNSGVRIAYGVQLKPWLDPKALANT 352
               L D+  +N    E+    D + N+      D NS   ++     +   +   + ++
Sbjct: 583 RLHSLNDEVSRNDLSREEELHVDSNCNESVQGRVDWNSVKPLSKAYDEQDLQEVLRILSS 642

Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFK-SPETAWHFFCWVAYQPGYTHDVYALEK 411
           L++W P +   L      +T  LV + LR+       A HFF WV  Q G+         
Sbjct: 643 LEDW-PIIQDALEKCTIQFTPELVAETLRNCGMHGNAALHFFAWVGKQNGFCQTTETYNM 701

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR-TL 470
            + +  R    + +  L  ++R  G  +P  T  ++I  YG +   + ALK F + + + 
Sbjct: 702 AMKVSGRGKDFKHMRSLFYEMRRRGFLIPPDTWAIMIMQYGRTGLTEIALKIFGEMKASG 761

Query: 471 CGP-ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
           C P  S +K ++++        K ++  +AI +  EMI +G VPD +     +      G
Sbjct: 762 CNPNDSTYKYLIIF----LCGRKGRKVDEAIKIFREMIRAGHVPDKELVGTYLCCLCEVG 817

Query: 530 DEKIVQK-LFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATK 576
                +K + S+ +     P +Y   + I+A C+             +S      D  T 
Sbjct: 818 KLLEARKSVDSLCKAGFTVPASY--SLYIRALCRAGMLEEALSLVDQVSTEKTTLDRYTH 875

Query: 577 ELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
             L   L ++GR +EA A  +  +++   P++
Sbjct: 876 ASLVHGLLQKGRLEEALAKVDSMKQVGINPTV 907



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 100/249 (40%), Gaps = 21/249 (8%)

Query: 364 LADAKFVWTTRLVCKVL-RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHV 422
           L    F     +V KVL R +K P  A+ FF WV  + G+ H       ML         
Sbjct: 161 LDKVGFQLEPEIVEKVLKRCYKVPHLAYRFFNWVKTKDGFCHTTKTYNTMLYTAGEAREF 220

Query: 423 ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR-TLCGPISKFKLML 481
            +VD L+ ++          T  ++I  YG +K    AL      R + C P  +     
Sbjct: 221 SVVDVLLEEMEKYSCERDIKTWTILIRQYGKAKLIGKALLVHEKMRKSGCEPDVE----- 275

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF-SM 540
           +Y   L +L    +   A+ + +EM+   + P++  +  L+   A  GD   VQ +   M
Sbjct: 276 VYEVTLHSLCDAGKGEIALEIYKEMVQREMEPNLSLYKMLLNCLAKSGDVSAVQSVADDM 335

Query: 541 VRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGR 588
           +R + + P+  +   ++++YC            + L N  +  D    E L K L +  R
Sbjct: 336 IRVSQI-PEHDVHVCVLKSYCVAGRIREALELIRDLKNKEIQLDYEVSETLVKGLSRANR 394

Query: 589 RKEAAAVEE 597
             +A  + E
Sbjct: 395 IADALEIVE 403



 Score = 40.0 bits (92), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           ++SL+  L +  R  +A+  ++ M   GI P V  ++ L+ HF  +       ++F  ++
Sbjct: 875 HASLVHGLLQKGRLEEALAKVDSMKQVGINPTVHVYTSLIVHFFREKLASKALEIFESMK 934

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
           Q G EP    +  LI+ Y               L      PD  T  +    L + G+ +
Sbjct: 935 QEGCEPTIVTYSALIRGYMDTENVIEAWNVFHSLKTKGPAPDFKTYSMFLSCLCRAGKSE 994

Query: 591 EA 592
           EA
Sbjct: 995 EA 996


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 120/544 (22%), Positives = 212/544 (38%), Gaps = 102/544 (18%)

Query: 52  SNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEA----LKSNPNFSHNQSTLHA 107
           S  S S +S LN RL         + S PN D  +  ME+    +  + +F    S +H 
Sbjct: 61  SAVSKSEASGLNGRL-------QQIVSTPNGDLNVIGMESSPIGVNGSRSFEEFASNIH- 112

Query: 108 LATVLAKSQRNHELKTLI---------GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLS 158
               L K  RN EL+  +         GDI         +   +L++ +  SG  +    
Sbjct: 113 ----LRKLVRNGELEEGLKFLERMIYQGDIPDV------IACTSLIRGFCRSGKTKKATR 162

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
                     +    +YN+++  Y K+G+  +A+E   ++      P+  TY  ++  L 
Sbjct: 163 IMEILENSGAVPDVITYNVLIGGYCKSGEIDKALEVLERM---SVAPDVVTYNTILRSLC 219

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA 278
           + GKL  A+EV               Y IL+E         +A  LL+EMR  G  P   
Sbjct: 220 DSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVV 279

Query: 279 M-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYG 337
              V +  + + G +  A +FL  M       NV                      I + 
Sbjct: 280 TYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNV----------------------ITHN 317

Query: 338 VQLKP------WLDPKALANTL--DEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETA 389
           + L+       W+D + L + +     SP VV+      F+   RL+ + +   +     
Sbjct: 318 IILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKH 377

Query: 390 WHFFCWVAYQP---GYTHDVY---ALEKMLTILARHGHVELV--DRLIAKLRSDGMRLPF 441
                 ++Y P   G+  +     A+E +  +++R  + ++V  + L+  L  DG     
Sbjct: 378 GCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDG----- 432

Query: 442 STIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAI 500
                         K DAA++  +      C P+     ++ Y++++  LTK  +   A+
Sbjct: 433 --------------KVDAAVEILNQLSSKGCSPV-----LITYNTVIDGLTKVGKTEYAV 473

Query: 501 NVLEEMIFSGIVPDVQTFSGLMYHFALQG--DEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
            +LEEM   G+ PD+ T+S L+     +G  DE I  K+F  +    ++P A  +  ++ 
Sbjct: 474 ELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAI--KIFHDMEGLSIKPSAVTYNAIML 531

Query: 559 AYCK 562
             CK
Sbjct: 532 GLCK 535



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 9/121 (7%)

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           LR L +     + +  LE MI+ G +PDV   + L+  F   G  K   ++  ++  +G 
Sbjct: 113 LRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGA 172

Query: 547 EPDAYMFKVLIQAYCK---------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
            PD   + VLI  YCK          L   ++ PD  T   + +SL   G+ KEA  V +
Sbjct: 173 VPDVITYNVLIGGYCKSGEIDKALEVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLD 232

Query: 598 R 598
           R
Sbjct: 233 R 233



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 62/141 (43%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+      G ++  +   N+   +       +YN V+    K GK   AVE   +
Sbjct: 419 VTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEE 478

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +  +G  P+  TY+ ++  L   GK+D A+++F  +  + IK ++  Y  ++ G    ++
Sbjct: 479 MRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQ 538

Query: 258 FDEAKSLLNEMRDDGKFPGRA 278
              A   L  M + G  P  A
Sbjct: 539 TSRAIDFLAYMVEKGCKPTEA 559



 Score = 42.7 bits (99), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 21/147 (14%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y+ L+    K      A+ VLE M    + PDV T++ ++      G  K   ++  
Sbjct: 176 VITYNVLIGGYCKSGEIDKALEVLERM---SVAPDVVTYNTILRSLCDSGKLKEAMEVLD 232

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEG 587
              Q    PD   + +LI+A C              +      PD  T  +L   + KEG
Sbjct: 233 RQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEG 292

Query: 588 RRKEAAAVEERCEKINDVPSLALRGHI 614
           R  EA         +N++PS   + ++
Sbjct: 293 RLDEAIKF------LNNMPSYGCKPNV 313



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 35/179 (19%), Positives = 71/179 (39%), Gaps = 1/179 (0%)

Query: 74  HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKF 133
           H        D A+  +E + S   +  +  T + L T L K  +      ++  +SS   
Sbjct: 391 HGFCQEKKMDRAIEYLEIMVSRGCYP-DIVTYNTLLTALCKDGKVDAAVEILNQLSSKGC 449

Query: 134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE 193
             V + +  ++   +  G  E  +    E R++       +Y+ ++    + GK  EA++
Sbjct: 450 SPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIK 509

Query: 194 TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
            F  +      P++ TY  ++  L    +   A++  + +     K T   Y IL+EG 
Sbjct: 510 IFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILIEGI 568


>gi|125604707|gb|EAZ43743.1| hypothetical protein OsJ_28367 [Oryza sativa Japonica Group]
          Length = 812

 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 103/513 (20%), Positives = 195/513 (38%), Gaps = 33/513 (6%)

Query: 56  NSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKS 115
           ++LS  L  R L    V+  LR + +AD A+    A         + S   AL    + +
Sbjct: 91  SALSPRLRSRPLHAHAVSLLLRLSSHADEAMFDALADARAAGLPASSSAFAALVAAHSSA 150

Query: 116 QRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
            RN +       +   +    +  +  +++    SG + L L+ +N         +  +Y
Sbjct: 151 GRNADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATY 210

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           N++M    K G   +A++ F +++D G +PN + YTV++  L N GK+D A+++  ++  
Sbjct: 211 NVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKD 270

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGA 295
                    Y   + G   V R +EA   L  ++D G   G               ++G 
Sbjct: 271 KGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALG---------------LKGY 315

Query: 296 NEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDE 355
           +  +  +   +R      +++G    +   + N S   + Y + ++   +   + + L  
Sbjct: 316 SCLIDGLFQARR------FDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSF 369

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
                        F + T  V KVL      E A H       Q     D      M+  
Sbjct: 370 LDVMKKKGFVPDTFCYNT--VLKVLCDHGDLERA-HTLRSEMLQNNLVLDSTTQTIMICG 426

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
           L + G V+   ++  ++   G      T   +ID +    + + A   FH       P  
Sbjct: 427 LCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSL 486

Query: 476 KFKLMLLYSS---------LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
             +L L  +          L+  + +  +   A  +L  +I SG+VPDV T++ L+    
Sbjct: 487 FLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLC 546

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
              +     +LF  ++  G+ PD   +  LI  
Sbjct: 547 KARNLDGAVRLFKELQLKGISPDEITYGTLIDG 579



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 129/601 (21%), Positives = 224/601 (37%), Gaps = 115/601 (19%)

Query: 67  LDPFIVTHALRSA--PNAD-------SALSIMEALKSNPNFSHNQSTLHALATVLAKSQR 117
           L P  V+ AL  A  P A        SALS    L+S P  +H  S L  L+     S  
Sbjct: 65  LTPHAVSDALLCAAIPAASRLRLFLFSALS--PRLRSRPLHAHAVSLLLRLS-----SHA 117

Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG---DLELVLSTWNEYRQRAKLLSTES 174
           +  +   + D  ++     S  F  L+  +S++G   D     S  +E++ R    +   
Sbjct: 118 DEAMFDALADARAAGLPASSSAFAALVAAHSSAGRNADAVQAFSRMDEFQSRP---TAFV 174

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YN ++     +G    A+  + +++  G  PN  TY V+++ L   G    AL++F  + 
Sbjct: 175 YNTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEML 234

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP------------GRAMRV- 281
              I    K Y +L+       + DEA  LL  M+D G  P             +  RV 
Sbjct: 235 DRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVN 294

Query: 282 -ALERM---QEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYG 337
            A +R+   Q+ GF  G   +    L D   +  R+             D   G    Y 
Sbjct: 295 EAFQRLVMLQDGGFALGLKGY--SCLIDGLFQARRF-------------DEGFGY---YK 336

Query: 338 VQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVA 397
             L+  + P  +  T+      ++   A+A  +                E A  F   V 
Sbjct: 337 TMLERNISPDVVLYTI------MIRGCAEAGRI----------------EDALSFL-DVM 373

Query: 398 YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA 457
            + G+  D +    +L +L  HG +E    L +++  + + L  +T  ++I   G+ K+ 
Sbjct: 374 KKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMI--CGLCKRG 431

Query: 458 --DAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM-------- 506
             D A++ F +     C P      ++ Y++L+    +  R  +A  +  +M        
Sbjct: 432 LVDEAMQIFDEMGEHGCDPT-----VMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSL 486

Query: 507 -----IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
                + +  V D ++   L++     G      KL   +  +GV PD   +  LI   C
Sbjct: 487 FLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLC 546

Query: 562 KY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA 609
           K             L    + PD  T   L   L +  R  +A  + +   +    PSL+
Sbjct: 547 KARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLS 606

Query: 610 L 610
           +
Sbjct: 607 I 607



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 16/167 (9%)

Query: 168 KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227
           ++  +ES   ++    ++G+  +A +  R +ID G +P+  TY  +I  L     LD A+
Sbjct: 496 QVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAV 555

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG----RAMRVAL 283
            +F  L L  I      Y  L++G +   R ++A  L   +   G  P      +M  +L
Sbjct: 556 RLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSL 615

Query: 284 ERMQEMGFIQGANEFLREMLPDKR--------IKNV-RYYEDGSDDD 321
            RM+++   Q  N +L + LP K         + N  +  EDGS DD
Sbjct: 616 CRMKKLS--QAINLWL-DYLPKKYNFPVESEVLANAHKEIEDGSLDD 659



 Score = 45.8 bits (107), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 13/154 (8%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++LY+ ++R   +  R  DA++ L+ M   G VPD   ++ ++      GD +    L S
Sbjct: 347 VVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRS 406

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEG 587
            + QN +  D+    ++I   CK             +      P   T   L    ++EG
Sbjct: 407 EMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREG 466

Query: 588 RRKEAAAVEERCEKINDVPSLALRGHIWAVSSAD 621
           R +EA  +  + E  N+ PSL LR  + A    D
Sbjct: 467 RLEEARMLFHKMEMGNN-PSLFLRLTLGANQVCD 499


>gi|162460542|ref|NP_001105869.1| pentatricopeptide repeat protein [Zea mays]
 gi|95931777|gb|ABF57644.1| pentatricopeptide repeat protein [Zea mays]
          Length = 886

 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 90/430 (20%), Positives = 177/430 (41%), Gaps = 35/430 (8%)

Query: 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT 211
           D + V+S +    +R    S   + +++  YAK G    A  TF  +   G  PN+  +T
Sbjct: 235 DWQAVVSAF----ERIPKPSRREFGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFT 290

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
            ++      G +  AL     +    I+ T   Y IL+ G+        A +L  E +  
Sbjct: 291 SLVHAYAVAGDMRGALSCVEEMKSEGIEMTVVTYSILISGYGKTNDAQSADNLFKEAKTK 350

Query: 272 -GKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED---GSDDDEDENDD 327
                G      +    + G +  A E +REM  D     +  Y     G    +DE   
Sbjct: 351 LDNLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVVQDEKKC 410

Query: 328 -------NNSGVR---IAYGVQLKPWLD----PKALANTLDEWSPEVVSLLADAKFVWTT 373
                     G +   I+YG  +  ++     PKA+A + +    E   +  + K   T 
Sbjct: 411 LIVFERLKECGFKPTIISYGCLINLYVKVGKVPKAIAISKEM---ESHGIKHNNK---TY 464

Query: 374 RLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
            ++     H      A+  F     + G   D      ++    + G+++   R+  +++
Sbjct: 465 SMLINGFIHLHDFANAFSIF-EDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQ 523

Query: 434 SDGMRLPFSTIRLIIDFYGISKKADAALKAFH-DDRTLCGPISKFKLMLLYSSLLRTLTK 492
            + M+    T R II+ + ++     A        R+ C P      ++ Y++L+  L +
Sbjct: 524 KERMQPSNRTFRPIIEGFAVAGDMKRAFDTLDLMRRSGCAPT-----VMTYNALIHGLVR 578

Query: 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYM 552
             +   A++VL++M  +GI P+  T++ +M  +A  GD     + F+ ++++G++ D Y+
Sbjct: 579 KHQVEKAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYI 638

Query: 553 FKVLIQAYCK 562
           ++ L++A CK
Sbjct: 639 YETLLRACCK 648



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 113/539 (20%), Positives = 223/539 (41%), Gaps = 58/539 (10%)

Query: 65  RLLDP--FIVT---HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNH 119
           R ++P  F+ T   HA   A +   ALS +E +KS         T   L +   K+    
Sbjct: 280 RGIEPNAFVFTSLVHAYAVAGDMRGALSCVEEMKSE-GIEMTVVTYSILISGYGKTNDAQ 338

Query: 120 ELKTLIGDISSSKFLNVS-VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV 178
               L  + + +K  N++ + + N++  +  SG+++       E  +       + Y+ +
Sbjct: 339 SADNLFKE-AKTKLDNLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSM 397

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI 238
           M  Y       + +  F ++ + G  P   +Y  +I   V +GK+  A+ +   +    I
Sbjct: 398 MHGYTVVQDEKKCLIVFERLKECGFKPTIISYGCLINLYVKVGKVPKAIAISKEMESHGI 457

Query: 239 KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANE 297
           K  +K Y +L+ GF+ +  F  A S+  +M   G  P RA+  + +E   +MG +  A  
Sbjct: 458 KHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIR 517

Query: 298 FLREMLPDKRIKNVRYYE---DG---SDDDEDENDD----NNSGV--------RIAYGVQ 339
               M  ++   + R +    +G   + D +   D       SG          + +G+ 
Sbjct: 518 IFERMQKERMQPSNRTFRPIIEGFAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLV 577

Query: 340 LKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSP---ETAWHFFCWV 396
            K  ++ KA++  LD+ S   ++ +A  +  +T      ++R + +      A+ +F  +
Sbjct: 578 RKHQVE-KAVS-VLDKMS---IAGIAPNEHTYTI-----IMRGYAASGDIGKAFEYFTKI 627

Query: 397 AYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK 456
             + G   DVY  E +L    + G ++    L         ++P +T    I   G +++
Sbjct: 628 K-ESGLKLDVYIYETLLRACCKSGRMQ--SALAVTREMSFQKIPRNTFIYNILIDGWARR 684

Query: 457 ADA-----ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
            D       LK   +D     P +    +  ++S +    K      A NV++EM   G+
Sbjct: 685 GDVWEAADLLKQMKEDGI---PPN----IHTFTSYINACCKAGDMQRAENVIQEMADVGL 737

Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM 570
            P+V+TF+ L+  +A         K F  ++  G++PD   +  L+ +    LS + +M
Sbjct: 738 KPNVKTFTTLIKGWARVSLPDRALKCFEEMKSAGLKPDEAAYHCLVTS---LLSRATVM 793


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 102/482 (21%), Positives = 184/482 (38%), Gaps = 44/482 (9%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  Y+T G L  + S  +   +         +NI  S YAK G   +A++ F ++   G
Sbjct: 345 LIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHG 404

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             PN   Y  +I+ L  LG++D A   F+ +    +      +  LV G   V++++ A+
Sbjct: 405 LSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAE 464

Query: 263 SLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDE 322
            L+ EM D G  P                    N  +  +    R+   R   D  +   
Sbjct: 465 ELVYEMLDQGICPNAVF---------------FNTLICNLCNVGRVMEGRRLIDLME--- 506

Query: 323 DENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRH 382
                 + GVR        P +    L    DE + +V   +       T      +L  
Sbjct: 507 ------HVGVR-PDAFSYTPLISGYCLTGRTDE-AEKVFDGMVSIGLSPTEVTYNTLLHG 558

Query: 383 FKSPETAWHFFCWV--AYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP 440
           + S       +C      + G T  V     +L  L +         L   + + G +  
Sbjct: 559 YCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCD 618

Query: 441 FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAI 500
             T  +I++    S   D A K F   ++LC    +  + + ++ ++  L K  R  DA+
Sbjct: 619 IYTYNIILNGLCKSNCVDEAFKMF---QSLCSKGLQLNI-ITFTIMIGALLKGGRKEDAM 674

Query: 501 NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ-- 558
           ++   +  +G+VP+V T+  +  +   +G  +    LFS + +NG  P++ M   L++  
Sbjct: 675 DLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRL 734

Query: 559 ----------AYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
                     AY   L   N   +A+T  LL      +  +  A ++ E+   +N+  S 
Sbjct: 735 LHRGDISRAGAYLSKLDERNFSVEASTTSLLMSIFTSDEYQHHAKSLPEKYHFLNEANSS 794

Query: 609 AL 610
           AL
Sbjct: 795 AL 796



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y SLL  L K  R  +A    + MI  GI P V T+  L++ +A +G    +     ++ 
Sbjct: 307 YGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMV 366

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
           +NG+ PD ++F +   AY K             +    L P+      L  +L K GR  
Sbjct: 367 ENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVD 426

Query: 591 EA 592
           +A
Sbjct: 427 DA 428



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 49/102 (48%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SY+IV++ +   G+  +    F ++ID G  P+  TYT +I+ L      D A  VF  +
Sbjct: 201 SYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQM 260

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                K  +  Y  L+ G++ + ++ E   +L EM   G  P
Sbjct: 261 IDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKP 302



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 103/251 (41%), Gaps = 30/251 (11%)

Query: 399 QPGYTHDVYALEKMLTILARHGHV-ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS--K 455
           + G+  D  A+ ++L  L     V E +D L+ ++   G  +P  T+   I   G+   K
Sbjct: 118 KTGWRMDHIAINQLLKGLCHGKRVGEAMDVLLQRMPELGC-MP-DTVSYTILLKGLCNEK 175

Query: 456 KADAALKAFH----DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
           +A+ AL+  H    D    C P      ++ YS ++       +     N+  EMI  GI
Sbjct: 176 RAEEALELLHMMADDHGRRCPPN-----VVSYSIVINGFFTEGQVDKPYNLFLEMIDRGI 230

Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY----------- 560
            PDV T++ ++            + +F  +  NG +P+ Y +  LI  Y           
Sbjct: 231 PPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQ 290

Query: 561 -CKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRG---HIWA 616
             + +S   L PD  T   L   L K GR +EA    +   +    P ++  G   H +A
Sbjct: 291 MLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYA 350

Query: 617 VSSADLTRVHS 627
              A L+ +HS
Sbjct: 351 TKGA-LSEMHS 360



 Score = 39.3 bits (90), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 38/210 (18%), Positives = 87/210 (41%), Gaps = 7/210 (3%)

Query: 86  LSIMEALKSNPN-FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
           + +ME +   P+ FS+       L +    + R  E + +   + S       V +  L+
Sbjct: 502 IDLMEHVGVRPDAFSYT-----PLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLL 556

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204
             Y ++  ++     + E  ++       +YN ++    +T +  EA E +  +I+ G  
Sbjct: 557 HGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTK 616

Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL 264
            +  TY +++  L     +D A ++F +L    ++     + I++   +   R ++A  L
Sbjct: 617 CDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDL 676

Query: 265 LNEMRDDGKFPGRAM-RVALERMQEMGFIQ 293
              +  +G  P     R+  E + E G ++
Sbjct: 677 FAAIPANGLVPNVVTYRLVAENLIEEGSLE 706


>gi|226497622|ref|NP_001145695.1| uncharacterized protein LOC100279199 [Zea mays]
 gi|219884047|gb|ACL52398.1| unknown [Zea mays]
          Length = 288

 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 79/164 (48%), Gaps = 2/164 (1%)

Query: 68  DPFIVTHALRSAPNADSALSIME-ALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           D   V   L++ P    A      A  ++  F H++ T  ++  +L ++ R   +  L+ 
Sbjct: 67  DSHTVARVLKTHPPLQKAFLFFRLATTASRTFRHDRFTYTSMIHLLGEAGRVPAMLRLLA 126

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
           ++  +     +  F  +M W + +GD++  +  W E + R++  +  SY   + +     
Sbjct: 127 EMLRAGIAPDAATFTTVMHWLARAGDVDGAMRVWAEMKARSRP-TVVSYTACIKILFDAR 185

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           K  EA    R+++ EG  P  +TYTV+IEHL + GK ++ LE+ 
Sbjct: 186 KAEEARGVLREMVAEGLRPTCKTYTVLIEHLADTGKFEATLEIM 229



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 94/204 (46%), Gaps = 6/204 (2%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFF-CWVAYQPGYTHDVYALEKMLT 414
           WS     LL+     W +  V +VL+     + A+ FF         + HD +    M+ 
Sbjct: 51  WSAARPLLLSLPGLAWDSHTVARVLKTHPPLQKAFLFFRLATTASRTFRHDRFTYTSMIH 110

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI 474
           +L   G V  + RL+A++   G+    +T   ++ +   +   D A++ + + +    P 
Sbjct: 111 LLGEAGRVPAMLRLLAEMLRAGIAPDAATFTTVMHWLARAGDVDGAMRVWAEMKARSRPT 170

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
                ++ Y++ ++ L   ++  +A  VL EM+  G+ P  +T++ L+ H A  G  +  
Sbjct: 171 -----VVSYTACIKILFDARKAEEARGVLREMVAEGLRPTCKTYTVLIEHLADTGKFEAT 225

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQ 558
            ++   +++  V+PD  +  +L+Q
Sbjct: 226 LEIMDKMKEACVQPDKALCNILVQ 249


>gi|449461469|ref|XP_004148464.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g01390-like [Cucumis sativus]
          Length = 1058

 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 76/166 (45%)

Query: 68  DPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD 127
           D +++   L++ P  +          +   F H+Q T   +  +  ++ R   +  +   
Sbjct: 148 DSYLINQVLKTHPPLEKTWLFFNWASTLQVFKHDQYTYTTMLDIFGEAGRISSMNYVFQQ 207

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           +        +V + +LM W S SGD++  +  W E +      +  SY   + +    G+
Sbjct: 208 MKEKGIKIDAVTYTSLMHWRSNSGDVDGAIKLWKEMKANGCHPTVVSYTAYIKILLDNGQ 267

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
             EA  T+++++  G  PN   YT+++E+L+  GK   AL++FS +
Sbjct: 268 INEATATYKKMLQSGLSPNCCIYTILMEYLIGEGKCKEALDIFSKM 313



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 90/193 (46%), Gaps = 6/193 (3%)

Query: 371 WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIA 430
           W + L+ +VL+     E  W FF W +    + HD Y    ML I    G +  ++ +  
Sbjct: 147 WDSYLINQVLKTHPPLEKTWLFFNWASTLQVFKHDQYTYTTMLDIFGEAGRISSMNYVFQ 206

Query: 431 KLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR-TLCGPISKFKLMLLYSSLLRT 489
           +++  G+++   T   ++ +   S   D A+K + + +   C P      ++ Y++ ++ 
Sbjct: 207 QMKEKGIKIDAVTYTSLMHWRSNSGDVDGAIKLWKEMKANGCHPT-----VVSYTAYIKI 261

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
           L    +  +A    ++M+ SG+ P+   ++ LM +   +G  K    +FS ++  GV PD
Sbjct: 262 LLDNGQINEATATYKKMLQSGLSPNCCIYTILMEYLIGEGKCKEALDIFSKMQDAGVYPD 321

Query: 550 AYMFKVLIQAYCK 562
                +LIQ  CK
Sbjct: 322 KAACNILIQKCCK 334


>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
          Length = 1443

 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 101/225 (44%), Gaps = 18/225 (8%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           + G+  D      +L   A+ G VE V+R+  +L   G R    T   +I  YG   + D
Sbjct: 356 EKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLD 415

Query: 459 AALKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
            AL  + + R + C P +     + Y+ L+ +L K  R  +A  VLEEM  +G+ P + T
Sbjct: 416 LALGLYDEMRAIGCTPDA-----VTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVT 470

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM------- 570
           FS L+  +A  G +   ++ F  + ++GV+PD   + V++  + +      LM       
Sbjct: 471 FSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMI 530

Query: 571 -----PDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLAL 610
                PD    ++L  +L K     E   V +  E + ++  L +
Sbjct: 531 KDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMNPLVI 575



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 18/194 (9%)

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSL 486
           L+ ++R  G+R    T   +I         D A+  F +   + C P      +  Y+++
Sbjct: 280 LLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPD-----LWTYNAM 334

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           +    +C +  +A  + +E++  G  PD  T++ L+Y FA +GD + V+++   + + G 
Sbjct: 335 VSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGF 394

Query: 547 EPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAA 594
             D   +  +I  Y K             +      PDA T  +L  SL K  R  EA  
Sbjct: 395 RKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGK 454

Query: 595 VEERCEKINDVPSL 608
           V E        P+L
Sbjct: 455 VLEEMADAGLKPTL 468



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 16/182 (8%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN ++SV+ + GK  EA   F++++++G  P++ TY  ++      G ++    V   L
Sbjct: 330 TYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEEL 389

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFI 292
                ++    Y  ++  +  + R D A  L +EMR  G  P      V ++ + +M  I
Sbjct: 390 VKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRI 449

Query: 293 QGANEFLREMLPDKRIKN---------VRYYEDGSDDDEDENDDN--NSGV---RIAYGV 338
             A + L EM  D  +K            Y + G  DD +   D    SGV   R+AY V
Sbjct: 450 SEAGKVLEEM-ADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLV 508

Query: 339 QL 340
            L
Sbjct: 509 ML 510



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 10/205 (4%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
            F  +  T ++L    AK      ++ +  ++  + F    + +  ++  Y   G L+L 
Sbjct: 358 GFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLA 417

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           L  ++E R         +Y +++    K  +  EA +   ++ D G  P   T++ +I  
Sbjct: 418 LGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICA 477

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL---NEMRDDGK 273
               G+ D A   F  +    +K     YL++++ F    R DE + L+     M  DG 
Sbjct: 478 YAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFA---RSDETRKLMVLYRAMIKDGY 534

Query: 274 FPG----RAMRVALERMQEMGFIQG 294
            P     + +  AL +  E   I+G
Sbjct: 535 KPDDGLYQVLLAALAKGNEHDEIEG 559



 Score = 43.1 bits (100), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 6/125 (4%)

Query: 157 LSTWNEYRQRAKLLSTES------YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
           L  W +     K L  ES      +N ++  YA++G    A   F  +I +G +P   + 
Sbjct: 761 LKLWQQAENFVKGLKQESGVDRRIWNALIHAYAESGLYEHARAIFDIMIKKGPLPTVESV 820

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
             M+  L+  G+LD    V   L  + IK +    L+++E F       E   + N M+ 
Sbjct: 821 NGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKA 880

Query: 271 DGKFP 275
            G  P
Sbjct: 881 AGYLP 885


>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
 gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
          Length = 641

 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 90/417 (21%), Positives = 175/417 (41%), Gaps = 57/417 (13%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI---PNSRTYTVMIEHLVNLGKLDSAL 227
           + +S+N V++V  + G  + A+E +  VI    +   PN  T+ ++I+ +  +G +D A+
Sbjct: 130 TVKSFNSVLNVIIQEGLFYRALEFYNHVIGAKGVNISPNVLTFNLVIKTMCKVGLVDDAV 189

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP----------GR 277
           ++F  +P+ + +     Y  L++G    +R DEA SLL+EM+ DG FP          G 
Sbjct: 190 QMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGL 249

Query: 278 AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYG 337
             +  L R+ ++      N FL+   P++   N                       + +G
Sbjct: 250 CKKGDLARVAKL----VDNMFLKGCAPNEVTYNT----------------------LIHG 283

Query: 338 VQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVA 397
           + LK  L+ KA++  LD     +VS       V    ++  +++  ++ + A      + 
Sbjct: 284 LCLKGKLE-KAIS-LLD----RMVSSKCVPNVVTYGTIINGLVKQGRALDGARVL--ALM 335

Query: 398 YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA 457
            + GY  + Y    +++ L + G  +   +L  ++      L       +ID      K 
Sbjct: 336 EERGYHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKP 395

Query: 458 DAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
           D AL+   +     C P +       YSSL++   +      AI + ++M       +  
Sbjct: 396 DEALEVLSEMTNNRCKPNA-----YTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEV 450

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDA 573
            +S L++     G  K    +++ +   G +PD   +  +I      LSN+ L+ DA
Sbjct: 451 CYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMING----LSNAGLVEDA 503



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 103/242 (42%), Gaps = 31/242 (12%)

Query: 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHG----HVELVDRLIAKLRSDGMRLPF 441
           PE A   F  +AY+      V +   +L ++ + G     +E  + +I    + G+ +  
Sbjct: 111 PEKAVGLFDRMAYEFECKRTVKSFNSVLNVIIQEGLFYRALEFYNHVIG---AKGVNISP 167

Query: 442 S--TIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFD 498
           +  T  L+I         D A++ F D      P+SK +  +  Y +L+  L K  R  +
Sbjct: 168 NVLTFNLVIKTMCKVGLVDDAVQMFRD-----MPVSKCQPDVYTYCTLMDGLCKADRIDE 222

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A+++L+EM   G  P   TF+ L+     +GD   V KL   +   G  P+   +  LI 
Sbjct: 223 AVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIH 282

Query: 559 AYC------KYLS------NSNLMPDAATKELLKKSLWKEGRRKEAAAV----EERCEKI 602
             C      K +S      +S  +P+  T   +   L K+GR  + A V    EER   +
Sbjct: 283 GLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYHV 342

Query: 603 ND 604
           N+
Sbjct: 343 NE 344



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 87/206 (42%), Gaps = 10/206 (4%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N     A+   L +  +  E   ++ ++++++    +  + +LM+ +  +G+    +  W
Sbjct: 378 NTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMW 437

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            +  +     +   Y++++    K GK  EA+  + Q++ +G  P+   Y  MI  L N 
Sbjct: 438 KDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNA 497

Query: 221 GKLDSALEVFSALPLMRIKRTSKQ-----YLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           G ++ AL++++    M  +    Q     Y IL+           A  LLN M D G  P
Sbjct: 498 GLVEDALQLYNE---MLCQEPDSQPDVVTYNILLNALCKQSSISRAIDLLNSMLDRGCDP 554

Query: 276 GRAMRVALERM--QEMGFIQGANEFL 299
                +   R   +++   Q   EFL
Sbjct: 555 DLVTCIIFLRTLREKLDPPQDGREFL 580



 Score = 45.4 bits (106), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 42/222 (18%), Positives = 89/222 (40%), Gaps = 5/222 (2%)

Query: 75  ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFL 134
            L  A   D A+S+++ ++ +  F  +  T + L   L K      +  L+ ++      
Sbjct: 213 GLCKADRIDEAVSLLDEMQIDGCFP-SPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCA 271

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
              V +  L+      G LE  +S  +       + +  +Y  +++   K G+  +    
Sbjct: 272 PNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARV 331

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
              + + G   N   Y+ +I  L   GK   A+++F  + +   +  +  Y  +++G   
Sbjct: 332 LALMEERGYHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCR 391

Query: 255 VERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGAN 296
             + DEA  +L+EM ++   P      +L +    GF +  N
Sbjct: 392 DGKPDEALEVLSEMTNNRCKPNAYTYSSLMK----GFFEAGN 429



 Score = 43.5 bits (101), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 4/148 (2%)

Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           L+T  Y+ V+    + GK  EA+E   ++ +    PN+ TY+ +++     G    A+E+
Sbjct: 377 LNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEM 436

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQE 288
           +  +      +    Y +L+ G     +  EA  +  +M   G  P   A    +  +  
Sbjct: 437 WKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSN 496

Query: 289 MGFIQGANEFLREML---PDKRIKNVRY 313
            G ++ A +   EML   PD +   V Y
Sbjct: 497 AGLVEDALQLYNEMLCQEPDSQPDVVTY 524


>gi|224133318|ref|XP_002321537.1| predicted protein [Populus trichocarpa]
 gi|222868533|gb|EEF05664.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 107/270 (39%), Gaps = 18/270 (6%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
           W P     L +           +VL+  +    A  FF W+   PG+ HD Y    M+ I
Sbjct: 288 WGPSAEEALVNLNCHMDAYQANQVLKQLQDHTVALGFFHWLKQLPGFKHDGYTYTTMVGI 347

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPI 474
           L R      +++L+ ++  DG +    T   +I  YG +   + A++ F+   +  C P 
Sbjct: 348 LGRAKQFVAINKLLDQMVRDGCQPTVVTYNRLIHSYGRANYLNDAVEVFNQMQKAGCEPD 407

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
                 + Y +L+    K      A+ + + M  +G+ PD  T+S ++      G     
Sbjct: 408 R-----VTYCTLIDIHAKAGFLNFAMEMYQRMQAAGLSPDTFTYSVMINCLGKAGHLAAA 462

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKS 582
            KLF  + + G  P+   + ++I    K             + N+   PD  T  ++ + 
Sbjct: 463 DKLFCEMIEQGCVPNLVTYNIMIALQAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEV 522

Query: 583 LWKEGRRKEAAAVEERCEKINDVPSLALRG 612
           L   G   EA A+    ++ N VP   + G
Sbjct: 523 LGHSGYLDEAEAIFSEMKRKNWVPDEPVYG 552



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/248 (19%), Positives = 103/248 (41%), Gaps = 6/248 (2%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           +D +     L+   +   AL     LK  P F H+  T   +  +L ++++   +  L+ 
Sbjct: 303 MDAYQANQVLKQLQDHTVALGFFHWLKQLPGFKHDGYTYTTMVGILGRAKQFVAINKLLD 362

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
            +         V +  L+  Y  +  L   +  +N+ ++        +Y  ++ ++AK G
Sbjct: 363 QMVRDGCQPTVVTYNRLIHSYGRANYLNDAVEVFNQMQKAGCEPDRVTYCTLIDIHAKAG 422

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
               A+E ++++   G  P++ TY+VMI  L   G L +A ++F  +           Y 
Sbjct: 423 FLNFAMEMYQRMQAAGLSPDTFTYSVMINCLGKAGHLAAADKLFCEMIEQGCVPNLVTYN 482

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM--- 302
           I++        +  A  L  +M++ G  P +    + +E +   G++  A     EM   
Sbjct: 483 IMIALQAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHSGYLDEAEAIFSEMKRK 542

Query: 303 --LPDKRI 308
             +PD+ +
Sbjct: 543 NWVPDEPV 550


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 99/464 (21%), Positives = 177/464 (38%), Gaps = 109/464 (23%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN +++ Y  TG+  +A    R V D    P+S TY  +I  L   G+  +AL V   +
Sbjct: 126 AYNAMVAGYCVTGQ-LDAAR--RLVADMPMEPDSYTYNTLIRGLCGRGRTGNALVVLDDM 182

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
                      Y IL+E       + +A  LL+EMR  G  P      V +  + + G +
Sbjct: 183 LRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRV 242

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKP------WLDP 346
             A EFL+  LP            G + +            ++Y + LK       W D 
Sbjct: 243 DDAIEFLKS-LPSH----------GCEPNT-----------VSYNIVLKGLCTAERWEDA 280

Query: 347 KALANTLDE--WSPEVVSLLADAKFVWTTRLV-------CKVLRHFKSPET-----AWHF 392
           + L   + +  + P VV+      F+    LV        ++ ++  +P +       H 
Sbjct: 281 EKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHA 340

Query: 393 FC------------WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP 440
           FC             +    G   D+ +   +LT L R G V+    L+ +L+  G    
Sbjct: 341 FCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKG---- 396

Query: 441 FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAI 500
                                         C P+     ++ Y++++  LTK  +  +A+
Sbjct: 397 ------------------------------CTPV-----LISYNTVIDGLTKAGKTKEAL 421

Query: 501 NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
            +L EM+  G+ PD+ T+S +      +   +   + F  V+  G+ P+  ++  ++   
Sbjct: 422 ELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGL 481

Query: 561 CK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           CK            Y+ ++  MP+ +T  +L + L  EG  KEA
Sbjct: 482 CKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEA 525



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 72/166 (43%), Gaps = 1/166 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V++  L+      G+++  +   ++ + +       SYN V+    K GK  EA+E   +
Sbjct: 367 VSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNE 426

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++ +G  P+  TY+ +   L    +++ A+  F  +  M I+  +  Y  ++ G      
Sbjct: 427 MVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRE 486

Query: 258 FDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
              A  L   M  +G  P  +   + +E +   G ++ A E L E+
Sbjct: 487 THNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEARELLGEL 532



 Score = 42.7 bits (99), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 40/201 (19%), Positives = 80/201 (39%), Gaps = 1/201 (0%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + HA       D A++ +E + S   +  +  + + L T L +         L+  +   
Sbjct: 337 ILHAFCKQKKMDRAMAFVELMVSRGCYP-DIVSYNTLLTALCRGGEVDAAVELLHQLKDK 395

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
               V +++  ++   + +G  +  L   NE   +       +Y+ + S   +  +  EA
Sbjct: 396 GCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEA 455

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
           +  F +V D G  PN+  Y  ++  L    +  +A+++F  +           Y IL+EG
Sbjct: 456 IRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEG 515

Query: 252 FVGVERFDEAKSLLNEMRDDG 272
                   EA+ LL E+   G
Sbjct: 516 LTYEGLVKEARELLGELCSRG 536



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 48/105 (45%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           +T SYNIV+       +  +A +   ++  +G  PN  T+ ++I  L   G ++ A+EV 
Sbjct: 260 NTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVL 319

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             +P       S  Y  ++  F   ++ D A + +  M   G +P
Sbjct: 320 DQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYP 364


>gi|224088126|ref|XP_002308333.1| predicted protein [Populus trichocarpa]
 gi|222854309|gb|EEE91856.1| predicted protein [Populus trichocarpa]
          Length = 1048

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 110/512 (21%), Positives = 203/512 (39%), Gaps = 72/512 (14%)

Query: 162 EYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL---- 217
           E  +R   +  + Y I+++ Y +  +  +A++ F+ + + G +P + TYT +++HL    
Sbjct: 403 EIMKRKDFVDGKVYGIIINGYLRRNELSKALDLFQSMKEFGHLPTTSTYTELMQHLFRSN 462

Query: 218 -------------------------------VNLGKLDSALEVFSALPLMRIKRTSKQYL 246
                                          V    +  A EVF  +    IK T K Y 
Sbjct: 463 EYQKCCELYDEMLERGVEIDSVAVMAIVAGHVRQDHISEAWEVFETMEDKGIKPTWKSYS 522

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM----RVALERMQEMGFIQGANEFLR-- 300
           I ++    V R DE   +L +M+    F    +       +ER  EM  I+   +  R  
Sbjct: 523 IFIKELCKVLRTDEIIKVLGKMQASKMFICDEIFEWVISCMERKGEMDNIRKVKQMHRIC 582

Query: 301 --EMLPDKRIKNVRYYEDGSDDDEDEND------DNNSGVRIAYGVQLKPWLDPKALANT 352
               L D+  +N    E+    D + N+      D NS   ++     +   +   + ++
Sbjct: 583 RLHSLNDEVTRNDLSREEELHVDSNCNESVQGRVDWNSVKPLSKAYDEQDLQEVLRILSS 642

Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFK-SPETAWHFFCWVAYQPGYTHDVYALEK 411
           L++W P +   L      +T  LV + LR+       A HFF WV  Q G+         
Sbjct: 643 LEDW-PIIQDALEKCTIQFTPELVAETLRNCGMHGNAALHFFAWVGKQNGFCQTTETYNM 701

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR-TL 470
            + +  R    + +  L  ++R  G  +P  T  ++I  YG +   + ALK F + + + 
Sbjct: 702 AMKVSGRGKDFKHMRSLFYEMRRRGFLIPPDTWAIMIMQYGRTGLTEIALKIFGEMKASG 761

Query: 471 CGP-ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
           C P  S +K ++++        K ++  +AI +  EMI +G VPD +     +      G
Sbjct: 762 CNPNDSTYKYLIIF----LCGRKGRKVDEAIKIFREMIRAGHVPDKELVGTYLCCLCEVG 817

Query: 530 DEKIVQK-LFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATK 576
                +K + S+ +     P +Y   + I+A C+             +S      D  T 
Sbjct: 818 KLLEARKSVDSLCKAGFTVPASY--SLYIRALCRAGMLEEALSLVDQVSTEKTTLDRYTH 875

Query: 577 ELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
             L   L ++GR +EA A  +  +++   P++
Sbjct: 876 ASLVHGLLQKGRLEEALAKVDSMKQVGINPTV 907



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 100/249 (40%), Gaps = 21/249 (8%)

Query: 364 LADAKFVWTTRLVCKVL-RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHV 422
           L    F     +V KVL R +K P  A+ FF WV  + G+ H       ML         
Sbjct: 161 LDKVGFQLEPEIVEKVLKRCYKVPHLAYRFFNWVKTKDGFCHTTKTYNTMLYTAGEAREF 220

Query: 423 ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR-TLCGPISKFKLML 481
            +VD L+ ++          T  ++I  YG +K    AL      R + C P  +     
Sbjct: 221 SVVDVLLEEMEKYSCERDIKTWTILIQQYGKAKLVGKALLVHEKMRKSGCEPDVE----- 275

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF-SM 540
           +Y   L +L    +   A+ + +EM+   + P++  +  L+   A  GD   VQ +   M
Sbjct: 276 VYEVTLHSLCDAGKGEIALEIYKEMVQREMEPNLSLYKMLLNCLAKSGDVSAVQSVADDM 335

Query: 541 VRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGR 588
           +R + + P+  +   ++++YC            + L N  +  D    E L K L +  R
Sbjct: 336 IRVSQI-PEHDVHVCVLKSYCVAGRIREALELIRDLKNKEIQLDYEVSETLVKGLSRANR 394

Query: 589 RKEAAAVEE 597
             +A  + E
Sbjct: 395 IADALEIVE 403



 Score = 39.7 bits (91), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           ++SL+  L +  R  +A+  ++ M   GI P V  ++ L+ HF  +       ++F  ++
Sbjct: 875 HASLVHGLLQKGRLEEALAKVDSMKQVGINPTVHVYTSLIVHFFREKLASKALEIFESMK 934

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
           Q G EP    +  LI+ Y               L      PD  T  +    L + G+ +
Sbjct: 935 QEGCEPTIVTYSALIRGYMDTENVIEAWNVFHSLKTKGPAPDFKTYSMFLSCLCRAGKSE 994

Query: 591 EA 592
           EA
Sbjct: 995 EA 996


>gi|125592120|gb|EAZ32470.1| hypothetical protein OsJ_16686 [Oryza sativa Japonica Group]
          Length = 879

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 86/414 (20%), Positives = 171/414 (41%), Gaps = 25/414 (6%)

Query: 165 QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
           +R    S   + +++  YAK G    A  TF  +   G  PN+  +T ++        + 
Sbjct: 235 ERIPKPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMR 294

Query: 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD-GKFPGRAMRVAL 283
            AL     +    ++ T   Y IL+ GF  +     A +L  E +       G      +
Sbjct: 295 GALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNII 354

Query: 284 ERMQEMGFIQGANEFLREMLPDKRIKNVRYYED---GSDDDEDENDD-------NNSGVR 333
               + G ++ A E +REM  D     +  Y     G    ++EN            G +
Sbjct: 355 HAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFK 414

Query: 334 ---IAYGVQLKPWLDPKALANTLD-EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETA 389
              I+YG  L  ++    +A  L      E   +  + K   T  ++     H      A
Sbjct: 415 PSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNK---TYSMLINGFIHLHDFANA 471

Query: 390 WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID 449
           +  F  +  + G   D      ++    + G+++    ++ K++ + M+      R II+
Sbjct: 472 FAIFEEM-LRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIE 530

Query: 450 FYGISKKADAALKAFH-DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF 508
            Y ++    +AL       R+ C P      ++ Y++L+  L +  +   A++VL++M  
Sbjct: 531 GYAVAGDMKSALDTLDLMRRSGCVPT-----VMTYNALIHGLVRKHKVQRAVSVLDKMSI 585

Query: 509 SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           +GI P+  T++ +M  +A  GD     + F+ ++++G++ D Y+++ L++A CK
Sbjct: 586 AGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCK 639



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 105/248 (42%), Gaps = 7/248 (2%)

Query: 65  RLLDP--FIVT---HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNH 119
           R ++P  F+ T   HA   A +   ALS +E +KS         T   L +  AK   + 
Sbjct: 271 RGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSE-GLELTIVTYSILISGFAKINDSQ 329

Query: 120 ELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM 179
               L  +  +       + + N++  +  SG++E       E  +       + Y+ +M
Sbjct: 330 SADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMM 389

Query: 180 SVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIK 239
             Y       + +  F ++ + G  P+  +Y  ++   V +GK+  AL +   +    IK
Sbjct: 390 HGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIK 449

Query: 240 RTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEF 298
             +K Y +L+ GF+ +  F  A ++  EM   G  P RA+  + +E   +MG +  A   
Sbjct: 450 HNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICI 509

Query: 299 LREMLPDK 306
           L +M  ++
Sbjct: 510 LEKMQKER 517



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 64/139 (46%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  L++    SG ++  L+   E   +    +T  YNI++  +A+ G  +EA +  +Q+ 
Sbjct: 630 YETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMK 689

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           ++G  PN  TYT  I      G +  A +V   +  + +K   K Y  L++G+  V   D
Sbjct: 690 EDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPD 749

Query: 260 EAKSLLNEMRDDGKFPGRA 278
            A     EM+  G  P  A
Sbjct: 750 RALKCFEEMKLAGLKPDEA 768



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 1/142 (0%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y I+M  YA +G   +A E F ++ + G   +   Y  ++      G++ SAL V   +
Sbjct: 594 TYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREM 653

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFI 292
              +I R +  Y IL++G+       EA+ L+ +M++DG  P        +    + G +
Sbjct: 654 SFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDM 713

Query: 293 QGANEFLREMLPDKRIKNVRYY 314
           Q A + + EM+      NV+ Y
Sbjct: 714 QRAEKVIEEMVDVGLKPNVKTY 735



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 6/163 (3%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G    V     ++  L R   V+    ++ K+   G+     T  +I+  Y  S     A
Sbjct: 552 GCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKA 611

Query: 461 LKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
            + F   +      S  KL + +Y +LLR   K  R   A+ V  EM F  I  +   ++
Sbjct: 612 FEYFTKIKE-----SGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYN 666

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            L+  +A +GD    + L   ++++GV P+ + +   I A CK
Sbjct: 667 ILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCK 709



 Score = 43.5 bits (101), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/138 (18%), Positives = 61/138 (44%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           +++  L+  Y   G +   LS   E        + ++Y+++++ +        A   F +
Sbjct: 418 ISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEE 477

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++  G  P+   Y ++IE    +G +D A+ +   +   R++ +++ +  ++EG+     
Sbjct: 478 MLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGD 537

Query: 258 FDEAKSLLNEMRDDGKFP 275
              A   L+ MR  G  P
Sbjct: 538 MKSALDTLDLMRRSGCVP 555



 Score = 39.7 bits (91), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 30/142 (21%), Positives = 57/142 (40%)

Query: 108 LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA 167
           L     KS R      +  ++S  K    +  +  L+  ++  GD+        + ++  
Sbjct: 633 LLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDG 692

Query: 168 KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227
              +  +Y   ++   K G    A +   +++D G  PN +TYT +I+    +   D AL
Sbjct: 693 VPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRAL 752

Query: 228 EVFSALPLMRIKRTSKQYLILV 249
           + F  + L  +K     Y  LV
Sbjct: 753 KCFEEMKLAGLKPDEASYHCLV 774


>gi|255546727|ref|XP_002514422.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546418|gb|EEF47918.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 809

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 98/438 (22%), Positives = 177/438 (40%), Gaps = 28/438 (6%)

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
           +++Q  S  G    V + + E+++         YN+VM    K GK  EAVE   ++  +
Sbjct: 364 SILQGLSQMGMASEVANQFKEFKKMGIFFDEACYNVVMDALCKLGKVEEAVELLVEMKGK 423

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
             +P+   YT +I      GK+  AL ++  +  +  K     Y +L  GF       EA
Sbjct: 424 KMVPDIINYTTVISGYFLKGKVVDALNIYREMKDIGHKPDIVTYNVLAGGFSRNGLTQEA 483

Query: 262 KSLLNEMRDDGKFPGRAMR-VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDD 320
            SLLN M   G  P      + +E +   G +  A  F  + L +K ++N     +G  +
Sbjct: 484 LSLLNYMETQGVKPDTVTHNMIIEGLCIGGKVDDAQAFF-DNLEEKCLENYSAMVNGYCE 542

Query: 321 DEDENDDNNSGVRIA-YGVQLKPWLDPKALANTLDEWSPE--------VVSLLADAKFVW 371
               N      +R++  G  LK     K L N   E   E        +V+L  +   + 
Sbjct: 543 ANHVNKAFALLIRLSKQGRILKKASFFKLLGNLCSEGDSEKALCLLETMVALNINPTMIM 602

Query: 372 TTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAK 431
            ++++  + +  +  +  + F   V    G   DV     M+    R   ++    ++  
Sbjct: 603 YSKVIGALFQAGEMEKAQYVFNMLV--DRGLAPDVITYTIMINGYCRMNKMKEAWHVLGD 660

Query: 432 LRSDGMRLPFSTIRLIIDFYGISK----KADAALKAFHDDRTLCGPISKFKLM------- 480
           +++ G+     T  ++++    SK     + ++L A      +  P + +  M       
Sbjct: 661 MKNRGIEPDVITYTVLLN--NCSKIDLRSSSSSLDAMKSKENMMDPSALWSEMKDMDIKP 718

Query: 481 --LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF 538
             + Y+ L+    K     DAIN+  EMI  G+ PD  T++ L+  +   G+ K    LF
Sbjct: 719 DVICYTVLIDKHCKTNNIQDAINLFNEMIDRGLAPDTVTYTALLSGYCNVGNIKKAVVLF 778

Query: 539 SMVRQNGVEPDAYMFKVL 556
             +   G+ PDA+   VL
Sbjct: 779 DEMLNKGIRPDAHTMSVL 796



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 2/148 (1%)

Query: 136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF 195
           +S NF  LM     S  +++ ++ + + +      +  +Y I +  + + G   EA++ F
Sbjct: 185 LSCNF--LMNRLVESRKVDMAIAIYRQLKAFGLNPNDYTYTIAIKGFCRKGNLAEAIDVF 242

Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
           R + + G  PNS +YT  IE L   G+ D   +V   +   +I      Y +++ GF   
Sbjct: 243 RDMEESGVTPNSFSYTTFIEGLCLHGRSDLGFKVLQDVINAKIPMDVFAYTVVIRGFCSE 302

Query: 256 ERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
            +  EA+S+L EM   G  P   +  AL
Sbjct: 303 MKLKEAESILREMEKQGFAPDVYVYCAL 330



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/178 (19%), Positives = 79/178 (44%), Gaps = 4/178 (2%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           +++  + +   L K  +  E   L+ ++   K +   +N+  ++  Y   G +   L+ +
Sbjct: 393 DEACYNVVMDALCKLGKVEEAVELLVEMKGKKMVPDIINYTTVISGYFLKGKVVDALNIY 452

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            E +         +YN++   +++ G   EA+     +  +G  P++ T+ ++IE L   
Sbjct: 453 REMKDIGHKPDIVTYNVLAGGFSRNGLTQEALSLLNYMETQGVKPDTVTHNMIIEGLCIG 512

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA 278
           GK+D A   F  L     ++  + Y  +V G+      ++A +LL  +   G+   +A
Sbjct: 513 GKVDDAQAFFDNLE----EKCLENYSAMVNGYCEANHVNKAFALLIRLSKQGRILKKA 566



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/133 (21%), Positives = 60/133 (45%), Gaps = 16/133 (12%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ ++  L K  +  +A+ +L EM    +VPD+  ++ ++  + L+G       ++  ++
Sbjct: 397 YNVVMDALCKLGKVEEAVELLVEMKGKKMVPDIINYTTVISGYFLKGKVVDALNIYREMK 456

Query: 543 QNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRK 590
             G +PD   + VL   + +            Y+    + PD  T  ++ + L   G+  
Sbjct: 457 DIGHKPDIVTYNVLAGGFSRNGLTQEALSLLNYMETQGVKPDTVTHNMIIEGLCIGGKVD 516

Query: 591 EAAA----VEERC 599
           +A A    +EE+C
Sbjct: 517 DAQAFFDNLEEKC 529


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 105/524 (20%), Positives = 197/524 (37%), Gaps = 62/524 (11%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T +AL  +L +++R      ++  +  +      V +  +++ Y   GD +  +   
Sbjct: 389 NTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVM 448

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           N   QR    +  +YN ++  Y  +G    A+     + D G  P+  +YT +I     +
Sbjct: 449 NNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKI 508

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAM 279
            K++SA  +F+ +    +      Y  L++G+   E+ D A SLL  M+  G  P  +  
Sbjct: 509 SKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTY 568

Query: 280 RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQ 339
            V +  + +     GA E  + M+ +    NV  Y     D   +N   +  + +     
Sbjct: 569 NVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYT-AMIDGLCKNGSTSLALEM----- 622

Query: 340 LKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQ 399
               ++   L N L  +S  + +L  + K      L  ++ RH                 
Sbjct: 623 FNKMIEQGCLPNLL-TYSSLIRALGQEGKVEEAENLFAELERH----------------- 664

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK--- 456
            G   D     KM+      G VE     + ++   G +    T  ++I   G+  +   
Sbjct: 665 -GLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIK--GLKNEYLL 721

Query: 457 ADAALKAFHDDRTLCG-----------PISKFKLMLL--------YSSLLRTLTKCKRDF 497
           AD  L A  D    C             +   KL  L         ++L+  L+   R F
Sbjct: 722 ADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWF 781

Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           +A  +L  MI  G+ PD + ++ L+       +  +   +F  +   G E     +K LI
Sbjct: 782 EANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELI 841

Query: 558 QAYCKY-------LSNSNLM-----PDAATKELLKKSLWKEGRR 589
            A C+        ++  N++     PD   + +L   L ++G +
Sbjct: 842 CALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYK 885



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 101/223 (45%), Gaps = 22/223 (9%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL-PFSTIRLIIDFYGISKKA 457
           Q G++ ++     ++      G+     R++  +R  G +   +S   LI  F  ISK  
Sbjct: 453 QRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISK-M 511

Query: 458 DAALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
           ++A   F++  D  LC P       + Y++L+    K ++   A ++LE M  SG  P+V
Sbjct: 512 ESAFGLFNEMVDDGLC-PNE-----VTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNV 565

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNS-------- 567
           QT++ L++    Q +    ++L  ++ + G+ P+   +  +I   CK  S S        
Sbjct: 566 QTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNK 625

Query: 568 ----NLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
                 +P+  T   L ++L +EG+ +EA  +    E+   +P
Sbjct: 626 MIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIP 668



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 6/105 (5%)

Query: 458 DAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
           D+AL+ F+   +  C P +     + YS+L+  L    R  +A +++ EMI  GI+P   
Sbjct: 267 DSALQVFNQMAKEGCEPNT-----VTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAH 321

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           T +G +      G  +   +LF  ++  G EP+ Y +  LI   C
Sbjct: 322 TCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLC 366



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 47/101 (46%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YN V++   K G   +A    ++V +    P++ TYT MI        LDSAL+VF+ + 
Sbjct: 218 YNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMA 277

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               +  +  Y  L+ G     R +EA  L+ EM   G  P
Sbjct: 278 KEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILP 318



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 7/173 (4%)

Query: 83  DSALSIMEALK---SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
           D+A S++E +K     PN       +H L      S      K +I       F NV V 
Sbjct: 547 DTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMI---EEGIFPNV-VT 602

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  ++     +G   L L  +N+  ++  L +  +Y+ ++    + GK  EA   F ++ 
Sbjct: 603 YTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELE 662

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
             G IP+  TY  MIE  +  GK++ A      +     + T   Y +L++G 
Sbjct: 663 RHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL 715


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 104/233 (44%), Gaps = 2/233 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I    L  A   D A  I++ ++ +     +  T   L   L  + +  + K L   + +
Sbjct: 267 ICIRVLGRAGRIDDAYGILKTME-DEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRA 325

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           S      V ++ LM  +   GDLE V   W+E           +Y I++    K+GK  +
Sbjct: 326 SSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQ 385

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A +    +   G +PN  TY  +I  L+NL +LD ALE+F+ +  + +  T+  Y++ ++
Sbjct: 386 AFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFID 445

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREM 302
            +  +   ++A     +M+  G  P   A   +L  + EMG I+ A +   ++
Sbjct: 446 YYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDI 498



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 130/635 (20%), Positives = 243/635 (38%), Gaps = 120/635 (18%)

Query: 58   LSSLLNDRLLDP----FIVTHALRSAPNA----------------DSALSIMEALKSN-- 95
            +S LLN R LD     F    +L  AP A                + AL   E +K    
Sbjct: 409  ISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGI 468

Query: 96   -PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
             P+ +   ++L++LA +     R  E K +  DI +      SV +  +M+ YS +G ++
Sbjct: 469  MPSIAACNASLYSLAEM----GRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQID 524

Query: 155  ------------------LVLST--------------WNEYRQRAKL---LSTESYNIVM 179
                              +V+++              W  + +   L    +  +YNI++
Sbjct: 525  KATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILI 584

Query: 180  SVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIK 239
            +   K GK  +A++ F  + + G  PN+ T+  +++ L     +D AL++F  + +M   
Sbjct: 585  TGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCS 644

Query: 240  RTSKQYLILVEGFVGVERFDEA------------------KSLLNEMRDDGKFPGRAMRV 281
                 Y  ++ G +   R   A                   +LL  +  DG+    A+++
Sbjct: 645  PDVLTYNTIIYGLIKEGRAGYAFWFYHQMKKFLSPDHVTLYTLLPGVVKDGRVE-DAIKI 703

Query: 282  ALERMQEMGFIQGAN----EFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYG 337
             +E + + G +Q +N    E +  +L +  I+    + +G   +    DDN     I   
Sbjct: 704  VMEFVHQSG-LQTSNQVWGELMECILIEAEIEEAISFAEGLVCNSICQDDNLILPLIRVL 762

Query: 338  VQLKPWLDPKALANTLDEW-----SPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHF 392
             + K  LD K L +   +      +PE  + L D        L C +       E A   
Sbjct: 763  CKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDG------LLGCNI------TEAALKL 810

Query: 393  FCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYG 452
            F  +    G   +++    +L    +   ++ +  L  ++   G +    T  +II    
Sbjct: 811  FVEMK-NAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALV 869

Query: 453  ISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV 512
             S   + AL  +++   + G  S       Y  L+  L K  R  +A+ + EEM      
Sbjct: 870  KSNSINKALDLYYE--IISGDFSPTPCT--YGPLIGGLLKAGRSEEAMKIFEEMPDYQCK 925

Query: 513  PDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA------------Y 560
            P+   ++ L+  F   G+  I   LF  + + G+ PD   + +L++             Y
Sbjct: 926  PNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHY 985

Query: 561  CKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
             + L  + L PD  +  L+   L K  R +EA ++
Sbjct: 986  FEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSL 1020



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 114/581 (19%), Positives = 212/581 (36%), Gaps = 72/581 (12%)

Query: 75  ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFL 134
           AL+S  + +SALS  + +   PN  H   T + +   L    R  ++   + D+   + +
Sbjct: 95  ALKSISDPNSALSYFKMVSQLPNIVHTPETCNYMLEFLRVHGRVEDM-AFVFDLMQKQVI 153

Query: 135 NVSVN-FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE 193
           N + N ++ + +  S  G +        + RQ   +L+  SYN ++    + G   EA++
Sbjct: 154 NRNPNTYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLLQPGFCKEALK 213

Query: 194 TFRQVIDEGAIPNSR-----------------------------------TYTVMIEHLV 218
            ++++I EG  P+ +                                   TYT+ I  L 
Sbjct: 214 VYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLG 273

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA 278
             G++D A  +   +           Y +L++      + D+AK L  +MR     P   
Sbjct: 274 RAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLV 333

Query: 279 MRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYED-----GSDDDEDENDDNNSGV 332
             + L  +    G ++    F  EM  D    +V  Y             D+  D    +
Sbjct: 334 TYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVM 393

Query: 333 RI--------AYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFK 384
           R+         Y   +   L+ + L   L+ ++   +  L  A   ++  L         
Sbjct: 394 RVRGIVPNLHTYNTLISGLLNLRRLDEALELFNN--MESLGVAPTAYSYVLFIDYYGKLG 451

Query: 385 SPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI 444
            PE A   F  +  + G    + A    L  LA  G +     +   + + G+     T 
Sbjct: 452 DPEKALDTFEKMK-KRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTY 510

Query: 445 RLIIDFYGISKKADAALKAFHDDRT-LCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVL 503
            +++  Y  + + D A K   +  +  C P      +++ +SL+ TL K  R  +A  + 
Sbjct: 511 NMMMKCYSKAGQIDKATKLLTEMLSEGCEPD-----IIVVNSLIDTLYKAGRVDEAWQMF 565

Query: 504 EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK- 562
             +    + P V T++ L+     +G       LF  ++++G  P+   F  L+   CK 
Sbjct: 566 GRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKN 625

Query: 563 -----------YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                       ++  N  PD  T   +   L KEGR   A
Sbjct: 626 DAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYA 666



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 83/175 (47%)

Query: 101  NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
            N  T + + + L KS   ++   L  +I S  F      +  L+     +G  E  +  +
Sbjct: 857  NIITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIF 916

Query: 161  NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
             E        +   YNI+++ + K G    A + F+++I EG  P+ ++YT+++E L   
Sbjct: 917  EEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMT 976

Query: 221  GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            G++D A+  F  L L  +   +  Y +++ G     R +EA SL +EM++ G  P
Sbjct: 977  GRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISP 1031



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 91/204 (44%), Gaps = 9/204 (4%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+  AL  +   D A  +++ ++       N  T + L + L   +R  E   L  ++ S
Sbjct: 372 ILVEALCKSGKVDQAFDMLDVMRVR-GIVPNLHTYNTLISGLLNLRRLDEALELFNNMES 430

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                 + +++  + +Y   GD E  L T+ + ++R  + S  + N  +   A+ G+  E
Sbjct: 431 LGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIRE 490

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A + F  + + G  P+S TY +M++     G++D A ++ + +    +    +  +I+V 
Sbjct: 491 AKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEM----LSEGCEPDIIVVN 546

Query: 251 GFVGV----ERFDEAKSLLNEMRD 270
             +       R DEA  +   ++D
Sbjct: 547 SLIDTLYKAGRVDEAWQMFGRLKD 570



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 67/326 (20%), Positives = 137/326 (42%), Gaps = 36/326 (11%)

Query: 241  TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLR 300
            T + Y  L++G +G    + A  L  EM++ G  P                    N F  
Sbjct: 787  TPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCP--------------------NIFTY 826

Query: 301  EMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVR---IAYGVQLKPWLDPKALANTLDEWS 357
             +L D   K+ R  E      E  N+    G +   I + + +   +   ++   LD + 
Sbjct: 827  NLLLDAHGKSKRIDEL----FELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYY 882

Query: 358  PEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILA 417
             E++S            L+  +L+  +S E    F     YQ      +Y +  ++    
Sbjct: 883  -EIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNI--LINGFG 939

Query: 418  RHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR-TLCGPISK 476
            + G+V +   L  ++  +G+R    +  ++++   ++ + D A+  F + + T   P + 
Sbjct: 940  KAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDT- 998

Query: 477  FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
                + Y+ ++  L K +R  +A+++  EM   GI P++ T++ L+ HF   G      K
Sbjct: 999  ----VSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGK 1054

Query: 537  LFSMVRQNGVEPDAYMFKVLIQAYCK 562
            +F  ++  G+EP+ + +  LI+ + K
Sbjct: 1055 MFEELQFMGLEPNVFTYNALIRGHSK 1080



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 97/233 (41%), Gaps = 9/233 (3%)

Query: 51   RSNSSNSLSSLLNDRLL---DPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQ 102
            +S   + L  L N+ L     P I+TH     AL  + + + AL +   + S  +FS   
Sbjct: 835  KSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEIISG-DFSPTP 893

Query: 103  STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
             T   L   L K+ R+ E   +  ++   +       +  L+  +  +G++ +    +  
Sbjct: 894  CTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKR 953

Query: 163  YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
              +       +SY I++     TG+  +AV  F ++   G  P++ +Y +MI  L    +
Sbjct: 954  MIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRR 1013

Query: 223  LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            L+ AL +FS +    I      Y  L+  F      D+A  +  E++  G  P
Sbjct: 1014 LEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEP 1066



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 49/104 (47%)

Query: 172  TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
            T SYN++++   K+ +  EA+  F ++ + G  P   TY  +I H  N G +D A ++F 
Sbjct: 998  TVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFE 1057

Query: 232  ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             L  M ++     Y  L+ G       D A S+  +M   G  P
Sbjct: 1058 ELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSP 1101


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 99/464 (21%), Positives = 172/464 (37%), Gaps = 66/464 (14%)

Query: 102 QSTLHALATVLAKSQRNHELKT---LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLS 158
           Q  +  L T++    R H+++T   ++ ++SS         F  LMQ +   G +E  L 
Sbjct: 192 QPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALR 251

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
              +  +     +  + N++++ Y K G+  +A+   ++ I +G  P+  TY   +  L 
Sbjct: 252 VKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLC 311

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA 278
             G +  AL+V   +           Y  ++         DEAK ++N+M D        
Sbjct: 312 QNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVD-------- 363

Query: 279 MRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGV 338
                                R  LPD    N       S +            R+   +
Sbjct: 364 ---------------------RGCLPDTTTFNTLIVALCSQN------------RLEEAL 390

Query: 339 QLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAY 398
            L   L  K L       SP+V +      F      +CKV      P      F  +  
Sbjct: 391 DLARELTVKGL-------SPDVYT------FNILINALCKV----GDPHLGIRLFEEMK- 432

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
             G   D      ++  L   G +     L+ ++ S+G      T   IID      + +
Sbjct: 433 SSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIE 492

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
            A + F  D+     IS+  +   +++L+  L K KR  DA  ++E+M+  G+ P   T+
Sbjct: 493 EAEEVF--DQMDAHGISRSAVT--FNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITY 548

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           + ++ H+  QGD K    +   +  NG E D   +  LI   CK
Sbjct: 549 NSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCK 592



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 85/199 (42%), Gaps = 1/199 (0%)

Query: 74  HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKF 133
           H L    +   AL +M+ L        +  T + +   L+K+    E K ++  +     
Sbjct: 308 HCLCQNGHVSHALKVMD-LMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGC 366

Query: 134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE 193
           L  +  F  L+    +   LE  L    E   +       ++NI+++   K G     + 
Sbjct: 367 LPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIR 426

Query: 194 TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
            F ++   G  P+  TY ++I+HL ++GKL +AL++   +      R++  Y  +++   
Sbjct: 427 LFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALC 486

Query: 254 GVERFDEAKSLLNEMRDDG 272
              R +EA+ + ++M   G
Sbjct: 487 KQMRIEEAEEVFDQMDAHG 505



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 12/118 (10%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++++  L+K     +A  ++ +M+  G +PD  TF+ L+     Q   +    L   + 
Sbjct: 338 YNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELT 397

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGR 588
             G+ PD Y F +LI A CK             + +S   PD  T  +L   L   G+
Sbjct: 398 VKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGK 455



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 46/222 (20%), Positives = 92/222 (41%), Gaps = 3/222 (1%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL 143
           +AL +++ ++SN     +  T + +   L K  R  E + +   + +      +V F  L
Sbjct: 458 NALDLLKEMESN-GCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTL 516

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
           +     +  ++       +  +     S  +YN +++ Y K G   +A +    +   G 
Sbjct: 517 IDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGF 576

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
             +  TY  +I  L   G+   AL++   + +  I+ T K Y  +++         +A S
Sbjct: 577 EIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALS 636

Query: 264 LLNEMRDDGKFPGRAMRVALER--MQEMGFIQGANEFLREML 303
           L  EM + G+ P       + R   +  G I+ A +FL EM+
Sbjct: 637 LFREMTEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMV 678



 Score = 42.0 bits (97), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 15/225 (6%)

Query: 380 LRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
           LR    PE A         +  +       E+++  L   G  +L++ L+ ++R +G   
Sbjct: 63  LREQADPEAALQMLNSALAREDFAPSRAVYEEIIQKLGTAGAFDLMEGLVREMRREGHEA 122

Query: 440 PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDA 499
               +R  ++ Y   ++ D A+    +     G  +   +   Y+ LL  L +  R    
Sbjct: 123 GAGVVRSFVESYARLRRFDDAVDLVRNQLNTFGVQADTAV---YNHLLNVLAEGSRMKLL 179

Query: 500 INVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
            +V  EM   GI PDV T + L+         +    +   +  + V PD   F  L+Q 
Sbjct: 180 ESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQG 239

Query: 560 YCKYLS------------NSNLMPDAATKELLKKSLWKEGRRKEA 592
           + +  S             +   P   T  +L     K GR ++A
Sbjct: 240 FIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDA 284



 Score = 39.7 bits (91), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 41/205 (20%), Positives = 78/205 (38%), Gaps = 18/205 (8%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   DV  L  ++  L R   V     ++ ++ S  +    +T   ++  +      +AA
Sbjct: 190 GIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAA 249

Query: 461 LKAFHDD-RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           L+       T C P       +  + L+    K  R  DA+  +++ I  G  PD  T++
Sbjct: 250 LRVKTKMMETGCSPTR-----VTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYN 304

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNS 567
             ++     G      K+  ++ Q G +PD + +  +I    K             + + 
Sbjct: 305 TFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDR 364

Query: 568 NLMPDAATKELLKKSLWKEGRRKEA 592
             +PD  T   L  +L  + R +EA
Sbjct: 365 GCLPDTTTFNTLIVALCSQNRLEEA 389


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 105/524 (20%), Positives = 197/524 (37%), Gaps = 62/524 (11%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T +AL  +L +++R      ++  +  +      V +  +++ Y   GD +  +   
Sbjct: 389 NTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVM 448

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           N   QR    +  +YN ++  Y  +G    A+     + D G  P+  +YT +I     +
Sbjct: 449 NNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKI 508

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAM 279
            K++SA  +F+ +    +      Y  L++G+   E+ D A SLL  M+  G  P  +  
Sbjct: 509 SKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTY 568

Query: 280 RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQ 339
            V +  + +     GA E  + M+ +    NV  Y     D   +N   +  + +     
Sbjct: 569 NVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYT-AMIDGLCKNGSTSLALEM----- 622

Query: 340 LKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQ 399
               ++   L N L  +S  + +L  + K      L  ++ RH                 
Sbjct: 623 FNKMIEQGCLPNLL-TYSSLIRALGQEGKVEEAENLFAELERH----------------- 664

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK--- 456
            G   D     KM+      G VE     + ++   G +    T  ++I   G+  +   
Sbjct: 665 -GLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIK--GLKNEYLL 721

Query: 457 ADAALKAFHDDRTLCG-----------PISKFKLMLL--------YSSLLRTLTKCKRDF 497
           AD  L A  D    C             +   KL  L         ++L+  L+   R F
Sbjct: 722 ADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWF 781

Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           +A  +L  MI  G+ PD + ++ L+       +  +   +F  +   G E     +K LI
Sbjct: 782 EANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELI 841

Query: 558 QAYCKY-------LSNSNLM-----PDAATKELLKKSLWKEGRR 589
            A C+        ++  N++     PD   + +L   L ++G +
Sbjct: 842 CALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYK 885



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 101/223 (45%), Gaps = 22/223 (9%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL-PFSTIRLIIDFYGISKKA 457
           Q G++ ++     ++      G+     R++  +R  G +   +S   LI  F  ISK  
Sbjct: 453 QRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISK-M 511

Query: 458 DAALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
           ++A   F++  D  LC P       + Y++L+    K ++   A ++LE M  SG  P+V
Sbjct: 512 ESAFGLFNEMVDDGLC-PNE-----VTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNV 565

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNS-------- 567
           QT++ L++    Q +    ++L  ++ + G+ P+   +  +I   CK  S S        
Sbjct: 566 QTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNK 625

Query: 568 ----NLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
                 +P+  T   L ++L +EG+ +EA  +    E+   +P
Sbjct: 626 MIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIP 668



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 6/105 (5%)

Query: 458 DAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
           D+AL+ F+   +  C P +     + YS+L+  L    R  +A +++ EMI  GI+P   
Sbjct: 267 DSALQVFNQMAKEGCEPNT-----VTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAH 321

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           T +G +      G  +   +LF  ++  G EP+ Y +  LI   C
Sbjct: 322 TCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLC 366



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 47/101 (46%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YN V++   K G   +A    ++V +    P++ TYT MI        LDSAL+VF+ + 
Sbjct: 218 YNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMA 277

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               +  +  Y  L+ G     R +EA  L+ EM   G  P
Sbjct: 278 KEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILP 318



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 7/173 (4%)

Query: 83  DSALSIMEALK---SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
           D+A S++E +K     PN       +H L      S      K +I       F NV V 
Sbjct: 547 DTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMI---EEGIFPNV-VT 602

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  ++     +G   L L  +N+  ++  L +  +Y+ ++    + GK  EA   F ++ 
Sbjct: 603 YTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELE 662

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
             G IP+  TY  MIE  +  GK++ A      +     + T   Y +L++G 
Sbjct: 663 RHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL 715



 Score = 38.9 bits (89), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 18/82 (21%), Positives = 42/82 (51%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +L+Y++++  L K     DA  +++++  S + PD  T++ ++     + D     ++F+
Sbjct: 215 LLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFN 274

Query: 540 MVRQNGVEPDAYMFKVLIQAYC 561
            + + G EP+   +  LI   C
Sbjct: 275 QMAKEGCEPNTVTYSTLINGLC 296


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 111/548 (20%), Positives = 212/548 (38%), Gaps = 65/548 (11%)

Query: 72  VTHALRSAPNADSALSIMEAL---KSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDI 128
           + H L  +   D A    E +   K +P+      T       L K ++  E   ++ ++
Sbjct: 297 IIHGLCKSGRLDEAYRFKEKMVKEKVSPSLI----TYSVFINGLIKLEKIDEANCVLKEM 352

Query: 129 SSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN 188
           S   F+   V +  L+  Y   G++   L   ++   +    ++ + N ++  + K+ + 
Sbjct: 353 SELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQI 412

Query: 189 FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
            +A     ++I  G   N  +++++I  L    +  +AL     + L  ++        L
Sbjct: 413 GQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTL 472

Query: 249 VEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKR 307
           V G     +  EA  L   +   G  P      AL   + + G +Q   + LR+ML    
Sbjct: 473 VSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDML---- 528

Query: 308 IKNVRYYEDGSDDDEDENDDNNSGV----RIAYGVQLKPWLDPKALANTLDEWSPEVVSL 363
                  E G   D    +   SG     ++  G +LK  +  K +   +  ++  +  L
Sbjct: 529 -------ERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGL 581

Query: 364 LADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVE 423
               K    +RL              WH       + GY  +VY    M+    +   VE
Sbjct: 582 CNADKIDEASRL--------------WH----ECKKNGYVPNVYTYGVMIDGYCKANKVE 623

Query: 424 LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLL- 482
             + L+ +L S  + L       +I  Y I+   +AA +   DD        K + +LL 
Sbjct: 624 EGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFR-LRDDM-------KSRGVLLS 675

Query: 483 ---YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
              YSSL+  L       DA ++L+EM   G++P+V  ++ ++  ++  G    V  +  
Sbjct: 676 CATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQ 735

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEG 587
            +  + + P+ + + ++I  +CK             ++   ++PDA T       L KEG
Sbjct: 736 EMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEG 795

Query: 588 RRKEAAAV 595
           + +EA  V
Sbjct: 796 KVEEAFKV 803



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 91/205 (44%), Gaps = 1/205 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           ++ H L +A   D A  +    K N  +  N  T   +     K+ +  E + L+ ++ S
Sbjct: 576 LLLHGLCNADKIDEASRLWHECKKN-GYVPNVYTYGVMIDGYCKANKVEEGENLLNELVS 634

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
            K    SV + +L++ Y  +G++       ++ + R  LLS  +Y+ +M      G   +
Sbjct: 635 KKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDD 694

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A     ++  EG +PN   YT +I     LG+++    V   +    I      Y I+++
Sbjct: 695 AKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMID 754

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP 275
           GF  + +  EA  LLNEM + G  P
Sbjct: 755 GFCKLGKTKEAAKLLNEMTEKGILP 779



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 1/130 (0%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           ++ +++ + K  +  +A+  F ++   G  PN  TY  +I  L   G+LD A      + 
Sbjct: 259 FSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMV 318

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQ 293
             ++  +   Y + + G + +E+ DEA  +L EM + G  P   +    ++   +MG I 
Sbjct: 319 KEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNIS 378

Query: 294 GANEFLREML 303
            A +   +ML
Sbjct: 379 EALKIRDDML 388



 Score = 45.4 bits (106), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 79/177 (44%), Gaps = 15/177 (8%)

Query: 105 LHALATVLAKSQRNHELKTLIGDISSSKFLNVS---VNFMNLMQWYSTSGDLELVLSTWN 161
           +H  +T++    + H     IG  S  + L V+   V + N++     SG L+       
Sbjct: 256 VHLFSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLD------E 309

Query: 162 EYRQRAKLL------STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
            YR + K++      S  +Y++ ++   K  K  EA    +++ + G +PN   Y  +I+
Sbjct: 310 AYRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLID 369

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
               +G +  AL++   +    I   S     L++GF   ++  +A+++L EM   G
Sbjct: 370 GYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRG 426



 Score = 42.4 bits (98), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 60/149 (40%), Gaps = 4/149 (2%)

Query: 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
           S +H L  +       H    L+ ++     L   V +  ++  YS  G +  V     E
Sbjct: 681 SLMHGLCNIGLVDDAKH----LLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQE 736

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
                   +  +Y I++  + K GK  EA +   ++ ++G +P++ TY      L   GK
Sbjct: 737 MSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGK 796

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEG 251
           ++ A +V   +    +      Y  L++G
Sbjct: 797 VEEAFKVCDEMSSGAVCLDEITYTTLIDG 825



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 12/143 (8%)

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
           L ++L+  L K  +  +A+ +   ++  G VP++ T + L++     G+ +   KL   +
Sbjct: 468 LLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDM 527

Query: 542 RQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRR 589
            + G+  D   +  LI   CK             +    + PD  T  LL   L    + 
Sbjct: 528 LERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKI 587

Query: 590 KEAAAVEERCEKINDVPSLALRG 612
            EA+ +   C+K   VP++   G
Sbjct: 588 DEASRLWHECKKNGYVPNVYTYG 610



 Score = 39.7 bits (91), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 7/121 (5%)

Query: 486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
           LL +L K      +  V + +   GI+PDV  FS ++  F     E     LFS + + G
Sbjct: 227 LLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFCKGHREDDAIGLFSKMEKLG 286

Query: 546 VEPDAYMFKVLIQAYCK-------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
           V P+   +  +I   CK       Y     ++ +  +  L+  S++  G  K     E  
Sbjct: 287 VAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEAN 346

Query: 599 C 599
           C
Sbjct: 347 C 347



 Score = 39.7 bits (91), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 47/102 (46%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN ++    K+G+  EA     +++ E   P+  TY+V I  L+ L K+D A  V   +
Sbjct: 293 TYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEM 352

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             +        Y  L++G+  +    EA  + ++M   G  P
Sbjct: 353 SELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISP 394



 Score = 39.7 bits (91), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 12/122 (9%)

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A +V   +   G+ P ++T + L+       + K   +++  +   G+ PD ++F  +I 
Sbjct: 205 AADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMIN 264

Query: 559 AYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
           A+CK             +    + P+  T   +   L K GR  EA   +E+  K    P
Sbjct: 265 AFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSP 324

Query: 607 SL 608
           SL
Sbjct: 325 SL 326


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 105/524 (20%), Positives = 197/524 (37%), Gaps = 62/524 (11%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T +AL  +L +++R      ++  +  +      V +  +++ Y   GD +  +   
Sbjct: 389 NTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVM 448

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           N   QR    +  +YN ++  Y  +G    A+     + D G  P+  +YT +I     +
Sbjct: 449 NNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKI 508

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAM 279
            K++SA  +F+ +    +      Y  L++G+   E+ D A SLL  M+  G  P  +  
Sbjct: 509 SKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTY 568

Query: 280 RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQ 339
            V +  + +     GA E  + M+ +    NV  Y     D   +N   +  + +     
Sbjct: 569 NVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYT-AMIDGLCKNGSTSLALEM----- 622

Query: 340 LKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQ 399
               ++   L N L  +S  + +L  + K      L  ++ RH                 
Sbjct: 623 FNKMIEQGCLPNLL-TYSSLIRALGQEGKVEEAENLFAELERH----------------- 664

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK--- 456
            G   D     KM+      G VE     + ++   G +    T  ++I   G+  +   
Sbjct: 665 -GLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIK--GLKNEYLL 721

Query: 457 ADAALKAFHDDRTLCG-----------PISKFKLMLL--------YSSLLRTLTKCKRDF 497
           AD  L A  D    C             +   KL  L         ++L+  L+   R F
Sbjct: 722 ADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWF 781

Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           +A  +L  MI  G+ PD + ++ L+       +  +   +F  +   G E     +K LI
Sbjct: 782 EANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELI 841

Query: 558 QAYCKY-------LSNSNLM-----PDAATKELLKKSLWKEGRR 589
            A C+        ++  N++     PD   + +L   L ++G +
Sbjct: 842 CALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYK 885



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 101/223 (45%), Gaps = 22/223 (9%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL-PFSTIRLIIDFYGISKKA 457
           Q G++ ++     ++      G+     R++  +R  G +   +S   LI  F  ISK  
Sbjct: 453 QRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISK-M 511

Query: 458 DAALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
           ++A   F++  D  LC P       + Y++L+    K ++   A ++LE M  SG  P+V
Sbjct: 512 ESAFGLFNEMVDDGLC-PNE-----VTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNV 565

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNS-------- 567
           QT++ L++    Q +    ++L  ++ + G+ P+   +  +I   CK  S S        
Sbjct: 566 QTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNK 625

Query: 568 ----NLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
                 +P+  T   L ++L +EG+ +EA  +    E+   +P
Sbjct: 626 MIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIP 668



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 6/105 (5%)

Query: 458 DAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
           D+AL+ F+   +  C P +     + YS+L+  L    R  +A +++ EMI  GI+P   
Sbjct: 267 DSALQVFNQMAKEGCEPNT-----VTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAH 321

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           T +G +      G  +   +LF  ++  G EP+ Y +  LI   C
Sbjct: 322 TCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLC 366



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 47/101 (46%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YN V++   K G   +A    ++V +    P++ TYT MI        LDSAL+VF+ + 
Sbjct: 218 YNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMA 277

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               +  +  Y  L+ G     R +EA  L+ EM   G  P
Sbjct: 278 KEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILP 318



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 7/173 (4%)

Query: 83  DSALSIMEALK---SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
           D+A S++E +K     PN       +H L      S      K +I       F NV V 
Sbjct: 547 DTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMI---EEGIFPNV-VT 602

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  ++     +G   L L  +N+  ++  L +  +Y+ ++    + GK  EA   F ++ 
Sbjct: 603 YTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELE 662

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
             G IP+  TY  MIE  +  GK++ A      +     + T   Y +L++G 
Sbjct: 663 RHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL 715



 Score = 38.9 bits (89), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 18/82 (21%), Positives = 42/82 (51%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +L+Y++++  L K     DA  +++++  S + PD  T++ ++     + D     ++F+
Sbjct: 215 LLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFN 274

Query: 540 MVRQNGVEPDAYMFKVLIQAYC 561
            + + G EP+   +  LI   C
Sbjct: 275 QMAKEGCEPNTVTYSTLINGLC 296


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 107/499 (21%), Positives = 197/499 (39%), Gaps = 53/499 (10%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + H   S+     A+  ++ ++S+     N  T  +L   L K+ R+ E + +   ++  
Sbjct: 277 ILHGYCSSGQPKEAIGTLKKMRSD-GVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKR 335

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
                   +  L+Q Y+T G L  + +  +   +         +NI++  YAK  K  +A
Sbjct: 336 GLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQA 395

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
           +  F ++   G  PN   Y  +I+ L   G +D A+  F  +    +      Y  L+ G
Sbjct: 396 MLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHG 455

Query: 252 FVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNV 311
               +++D+A+ L+ EM D G        + L            N      + D   K  
Sbjct: 456 LCTCDKWDKAEELILEMLDRG--------ICL------------NTIFFNSIIDSHCKEG 495

Query: 312 RYYEDGSDDDEDENDDNNSGVRIAYG---VQLKPWLDPKALANTLDEWS---PEVVSLLA 365
           R  E     D          VRI      +     +D   LA  +DE +     +VS+  
Sbjct: 496 RVIESEKLFD--------LMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGV 547

Query: 366 DAKFVWTTRLV---CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHV 422
               V    L+   C+V R     + A   F  +    G + ++     +L  L      
Sbjct: 548 KPDIVTYGTLINGYCRVSRM----DDALALFKEMV-SSGVSPNIITYNIILQGLFHTRRT 602

Query: 423 ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK--ADAALKAFHDDRTLCGPISKFKL- 479
                L   +   G +L  ST  +I+  +G+ K    D AL+ F +   LC  ++  +L 
Sbjct: 603 AAAKELYVSITKSGTQLELSTYNIIL--HGLCKNNLTDEALRMFQN---LC--LTDLQLE 655

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
              ++ ++  L KC R  +A ++      +G+VPDV+T+S +  +   QG  + +  LF 
Sbjct: 656 TRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFL 715

Query: 540 MVRQNGVEPDAYMFKVLIQ 558
            + +NG   D+ M   +++
Sbjct: 716 SMEENGCSADSRMLNSIVR 734



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 48/83 (57%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ YSSL+  L K  R  +A  + + M   G+ PD+ T+  L+  +A +G    +  L  
Sbjct: 306 VVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLD 365

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK 562
           ++ +NG++PD ++F +LI AY K
Sbjct: 366 LMVRNGIQPDHHVFNILICAYAK 388



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 102/550 (18%), Positives = 209/550 (38%), Gaps = 50/550 (9%)

Query: 77  RSAPNADSALSIMEALKSNPN-FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLN 135
           R++   D  L  M  L   P+ FS+N + L  L     +SQ   EL  ++ D        
Sbjct: 142 RTSDAMDIVLRRMTELGCIPDVFSYN-NLLKGLCDE-NRSQEALELLHMMADDRGGGSPP 199

Query: 136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF 195
             V++  ++  +   GD +   ST++E   R  L    +Y+ +++   K     +A+E  
Sbjct: 200 DVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVL 259

Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
             ++  G +P+  TY  ++    + G+   A+     +    ++     Y  L+      
Sbjct: 260 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKN 319

Query: 256 ERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREML-----PDKRIK 309
            R  EA+ + + M   G  P  A  R  L+     G +   +  L  M+     PD  + 
Sbjct: 320 GRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVF 379

Query: 310 NVRYYEDGSDDDEDENDDNNSGVR--------IAYGVQLKPWLDPKALANTLDEWSPEVV 361
           N+        +  D+     S +R        + YG  +       ++ + +  +   + 
Sbjct: 380 NILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMID 439

Query: 362 SLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH 419
             L     V+T+ +  +C   +  K+ E             G   +      ++    + 
Sbjct: 440 EGLTPNIIVYTSLIHGLCTCDKWDKAEELILEML-----DRGICLNTIFFNSIIDSHCKE 494

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL 479
           G V   ++L   +   G++    T   +ID   ++ K D A K      +    +     
Sbjct: 495 GRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVS----VGVKPD 550

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG-----DEKIV 534
           ++ Y +L+    +  R  DA+ + +EM+ SG+ P++ T     Y+  LQG          
Sbjct: 551 IVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIIT-----YNIILQGLFHTRRTAAA 605

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKS 582
           ++L+  + ++G + +   + +++   CK             L  ++L  +  T  ++  +
Sbjct: 606 KELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGA 665

Query: 583 LWKEGRRKEA 592
           L K GR  EA
Sbjct: 666 LLKCGRMDEA 675



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 88/489 (17%), Positives = 191/489 (39%), Gaps = 51/489 (10%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V + +++     +  ++  +   N   +   +    +YN ++  Y  +G+  EA+ T ++
Sbjct: 237 VTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKK 296

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +  +G  PN  TY+ ++ +L   G+   A ++F ++    ++     Y  L++G+     
Sbjct: 297 MRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGA 356

Query: 258 FDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY-- 314
             E  +LL+ M  +G  P      + +    +   +  A     +M       NV  Y  
Sbjct: 357 LVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGT 416

Query: 315 ------EDGSDDD-----EDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEW--SPEVV 361
                 + GS DD     E   D+  +   I Y   +           T D+W  + E++
Sbjct: 417 VIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLC-------TCDKWDKAEELI 469

Query: 362 SLLADAKFVWTTRLV-------CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT 414
             + D      T          CK  R  +S E  +     +  +P    D+     ++ 
Sbjct: 470 LEMLDRGICLNTIFFNSIIDSHCKEGRVIES-EKLFDLMVRIGVKP----DIITYNTLID 524

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI 474
                G ++   +L+A + S G++    T   +I+ Y    + D AL  F +   +   +
Sbjct: 525 GCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKE--MVSSGV 582

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
           S    ++ Y+ +L+ L   +R   A  +   +  SG   ++ T++ +++           
Sbjct: 583 SPN--IITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEA 640

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAY--CKYL----------SNSNLMPDAATKELLKKS 582
            ++F  +    ++ +   F ++I A   C  +          S + L+PD  T  L+ ++
Sbjct: 641 LRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAEN 700

Query: 583 LWKEGRRKE 591
           L ++G  +E
Sbjct: 701 LIEQGSLEE 709



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 14/128 (10%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           + ++S++ +  K  R  ++  + + M+  G+ PD+ T++ L+    L G      KL + 
Sbjct: 482 IFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLAS 541

Query: 541 VRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGR 588
           +   GV+PD   +  LI  YC            K + +S + P+  T  ++ + L+    
Sbjct: 542 MVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHT-- 599

Query: 589 RKEAAAVE 596
           R+ AAA E
Sbjct: 600 RRTAAAKE 607



 Score = 42.4 bits (98), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 90/243 (37%), Gaps = 22/243 (9%)

Query: 367 AKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPG--YTHDVYALEKMLTILARHGHVEL 424
           A      R +  V RH  SP  A   +  +A       T  V+    ++    R G ++L
Sbjct: 53  ASIYGLNRALADVARH--SPAAAVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDL 110

Query: 425 VDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS 484
               +  +   G R+   T   ++      K+   A+       T  G I     +  Y+
Sbjct: 111 GFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPD---VFSYN 167

Query: 485 SLLRTLTKCKRDFDAINVLEEMI---FSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
           +LL+ L    R  +A+ +L  M      G  PDV +++ ++  F  +GD       +  +
Sbjct: 168 NLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEM 227

Query: 542 RQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRR 589
              G+ PD   +  +I A CK             +  + +MPD  T   +       G+ 
Sbjct: 228 LDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQP 287

Query: 590 KEA 592
           KEA
Sbjct: 288 KEA 290



 Score = 42.4 bits (98), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 37/180 (20%), Positives = 73/180 (40%), Gaps = 5/180 (2%)

Query: 121 LKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS 180
            K ++    S   +  ++    L     T+   EL +S      Q    L   +YNI++ 
Sbjct: 574 FKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQ----LELSTYNIILH 629

Query: 181 VYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR 240
              K     EA+  F+ +        +RT+ +MI  L+  G++D A ++F+A     +  
Sbjct: 630 GLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVP 689

Query: 241 TSKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQGANEFL 299
             + Y ++ E  +     +E   L   M ++G     R +   + ++ + G I  A  +L
Sbjct: 690 DVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTYL 749


>gi|115466932|ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
 gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113595105|dbj|BAF18979.1| Os06g0199100 [Oryza sativa Japonica Group]
          Length = 1283

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 101/225 (44%), Gaps = 18/225 (8%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           + G+  D      +L   A+ G VE V+R+  +L   G R    T   +I  YG   + D
Sbjct: 196 EKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLD 255

Query: 459 AALKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
            AL  + + R + C P +     + Y+ L+ +L K  R  +A  VLEEM  +G+ P + T
Sbjct: 256 LALGLYDEMRAIGCTPDA-----VTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVT 310

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM------- 570
           FS L+  +A  G +   ++ F  + ++GV+PD   + V++  + +      LM       
Sbjct: 311 FSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMI 370

Query: 571 -----PDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLAL 610
                PD    ++L  +L K     E   V +  E + ++  L +
Sbjct: 371 KDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMNPLVI 415



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 18/194 (9%)

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSL 486
           L+ ++R  G+R    T   +I         D A+  F +   + C P      +  Y+++
Sbjct: 120 LLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPD-----LWTYNAM 174

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           +    +C +  +A  + +E++  G  PD  T++ L+Y FA +GD + V+++   + + G 
Sbjct: 175 VSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGF 234

Query: 547 EPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAA 594
             D   +  +I  Y K             +      PDA T  +L  SL K  R  EA  
Sbjct: 235 RKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGK 294

Query: 595 VEERCEKINDVPSL 608
           V E        P+L
Sbjct: 295 VLEEMADAGLKPTL 308



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 16/182 (8%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN ++SV+ + GK  EA   F++++++G  P++ TY  ++      G ++    V   L
Sbjct: 170 TYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEEL 229

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFI 292
                ++    Y  ++  +  + R D A  L +EMR  G  P      V ++ + +M  I
Sbjct: 230 VKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRI 289

Query: 293 QGANEFLREMLPDKRIKN---------VRYYEDGSDDDEDENDDN--NSGV---RIAYGV 338
             A + L EM  D  +K            Y + G  DD +   D    SGV   R+AY V
Sbjct: 290 SEAGKVLEEM-ADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLV 348

Query: 339 QL 340
            L
Sbjct: 349 ML 350



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 10/205 (4%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
            F  +  T ++L    AK      ++ +  ++  + F    + +  ++  Y   G L+L 
Sbjct: 198 GFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLA 257

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           L  ++E R         +Y +++    K  +  EA +   ++ D G  P   T++ +I  
Sbjct: 258 LGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICA 317

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL---NEMRDDGK 273
               G+ D A   F  +    +K     YL++++ F    R DE + L+     M  DG 
Sbjct: 318 YAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFA---RSDETRKLMVLYRAMIKDGY 374

Query: 274 FPG----RAMRVALERMQEMGFIQG 294
            P     + +  AL +  E   I+G
Sbjct: 375 KPDDGLYQVLLAALAKGNEHDEIEG 399



 Score = 43.1 bits (100), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 6/125 (4%)

Query: 157 LSTWNEYRQRAKLLSTES------YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
           L  W +     K L  ES      +N ++  YA++G    A   F  +I +G +P   + 
Sbjct: 601 LKLWQQAENFVKGLKQESGVDRRIWNALIHAYAESGLYEHARAIFDIMIKKGPLPTVESV 660

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
             M+  L+  G+LD    V   L  + IK +    L+++E F       E   + N M+ 
Sbjct: 661 NGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKA 720

Query: 271 DGKFP 275
            G  P
Sbjct: 721 AGYLP 725


>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 87/438 (19%), Positives = 172/438 (39%), Gaps = 58/438 (13%)

Query: 151 GDLELVLSTWNEYRQRAKLL-STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRT 209
           G+ E V   +NE     +    T +Y+ ++S + K G+   A+    ++ D G  P ++ 
Sbjct: 204 GEYEKVHELYNEMSNEGQCFPDTVTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKI 263

Query: 210 YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
           YT+++  L  L  +  AL +F  +     +     Y  L+ G     R DEA +  +EMR
Sbjct: 264 YTMLMALLFKLDNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMR 323

Query: 270 DDGKFPGRA-MRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDN 328
            +G  P    M   +  + + G +  A +   EM   + I +V                 
Sbjct: 324 REGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSV----------------- 366

Query: 329 NSGVRIAYGVQLKPWLDPKALANTLDEW-----------SPEVVSLLADAKFVWTTRLVC 377
                + Y   +K   + K+  + +  W           SP   S+L D  F  T R   
Sbjct: 367 -----VTYNTIIKALFESKSRVSEISSWFERMKGSGISPSPFTYSILIDG-FCKTNRTE- 419

Query: 378 KVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM 437
           K +   +  +      C  AY             ++  L +    +L + L  +L+ +  
Sbjct: 420 KAMMLLEEMDEKGFPPCPAAYC-----------SLIDALGKAKRYDLANELFQELKENCG 468

Query: 438 RLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
                   ++I   G + + D A+  F + +R  C P      +  Y++L+  L +    
Sbjct: 469 SSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPN-----VYAYNALMSGLARAGML 523

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
            +A+  +  M   G +PD+ +++ ++   A  G       +   ++Q+ ++PDA  +  +
Sbjct: 524 DEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSAIKPDAVSYNTV 583

Query: 557 IQAYCKYLSNSNLMPDAA 574
           + A    LS++ +  +AA
Sbjct: 584 LGA----LSHAGMFEEAA 597



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 90/207 (43%), Gaps = 7/207 (3%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           L+D F  T+        + A+ ++E +     F    +   +L   L K++R      L 
Sbjct: 408 LIDGFCKTN------RTEKAMMLLEEMDEK-GFPPCPAAYCSLIDALGKAKRYDLANELF 460

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
            ++  +   + +  +  +++    +G L+  +  ++E  +     +  +YN +MS  A+ 
Sbjct: 461 QELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSGLARA 520

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
           G   EA+ T R++ D G IP+  +Y +++  L   G  D A+ +   +    IK  +  Y
Sbjct: 521 GMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSAIKPDAVSY 580

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDG 272
             ++        F+EA  L+ EM   G
Sbjct: 581 NTVLGALSHAGMFEEAAKLMKEMNAIG 607



 Score = 42.0 bits (97), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 104/261 (39%), Gaps = 36/261 (13%)

Query: 355 EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDV---YALEK 411
           +W P+    L          LV +V++          FF W A +  Y HD     AL +
Sbjct: 68  KWGPDAEKALEVLMMKVDHWLVREVMKTDVGVSVKMQFFRWAARKRNYEHDTSTYMALIR 127

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL-----IIDFYGISKKADAALKAFHD 466
            L ++ ++G        + K+  + +R P   +       II   G +K    A+  F+ 
Sbjct: 128 CLEVVEQYGE-------MWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAIFYQ 180

Query: 467 DRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVL-EEMIFSG-IVPDVQTFSGLMY 523
            +   C P +       Y+S++  L   + +++ ++ L  EM   G   PD  T+S L+ 
Sbjct: 181 IKARKCQPTAH-----AYNSMIIMLMH-EGEYEKVHELYNEMSNEGQCFPDTVTYSALIS 234

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMP 571
            F   G +     L + ++ NG++P A ++ +L+    K             + +    P
Sbjct: 235 AFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRP 294

Query: 572 DAATKELLKKSLWKEGRRKEA 592
           D  T   L + L K GR  EA
Sbjct: 295 DVFTYTELIRGLGKAGRLDEA 315



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 38/200 (19%), Positives = 72/200 (36%), Gaps = 1/200 (0%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T   L     K+ R  +   L+ ++    F      + +L+     +   +L    + E 
Sbjct: 404 TYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANELFQEL 463

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
           ++     S   Y +++    K G+  +AV+ F ++   G  PN   Y  ++  L   G L
Sbjct: 464 KENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSGLARAGML 523

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVA 282
           D AL     +           Y I++         D A  +L  M+     P   +    
Sbjct: 524 DEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSAIKPDAVSYNTV 583

Query: 283 LERMQEMGFIQGANEFLREM 302
           L  +   G  + A + ++EM
Sbjct: 584 LGALSHAGMFEEAAKLMKEM 603



 Score = 40.4 bits (93), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 51/248 (20%), Positives = 90/248 (36%), Gaps = 37/248 (14%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T  AL +   K  R      L+ ++  +     +  +  LM       ++   L  + E 
Sbjct: 228 TYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEM 287

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
           R +       +Y  ++    K G+  EA   F ++  EG  P++     MI  L   G+L
Sbjct: 288 RHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRL 347

Query: 224 DSALEVFSALPLMR------------------------------------IKRTSKQYLI 247
           D A+++F  +  +R                                    I  +   Y I
Sbjct: 348 DDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGSGISPSPFTYSI 407

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDK 306
           L++GF    R ++A  LL EM + G  P  A   +L + + +      ANE  +E+  + 
Sbjct: 408 LIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANELFQELKENC 467

Query: 307 RIKNVRYY 314
              + R Y
Sbjct: 468 GSSSARVY 475


>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
 gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
          Length = 734

 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 97/450 (21%), Positives = 174/450 (38%), Gaps = 44/450 (9%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           +NI  S YAK G   +A++ F ++   G  PN   Y  +I+ L  LG++D A   F+ + 
Sbjct: 312 FNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMI 371

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQG 294
              +      +  LV G   V++++ A+ L+ EM D G  P                   
Sbjct: 372 NEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVF--------------- 416

Query: 295 ANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLD 354
            N  +  +    R+   R   D  +         + GVR        P +    LA   D
Sbjct: 417 FNTLICNLCNVGRVMEGRRLIDLME---------HVGVR-PDAFSYTPLISGYCLAGRTD 466

Query: 355 EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWV--AYQPGYTHDVYALEKM 412
           E + +V   +       T      +L  + S       +C      + G T  V     +
Sbjct: 467 E-AEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTI 525

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
           L  L +         L   + + G +    T  +I++    S   D A K F   ++LC 
Sbjct: 526 LHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMF---QSLCS 582

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
              +  + + ++ ++  L K  R  DA+++   +  +G+VP+V T+  +  +   +G  +
Sbjct: 583 KGLQLNI-ITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLE 641

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQ------------AYCKYLSNSNLMPDAATKELLK 580
               LFS + +NG  P++ M   L++            AY   L   N   +A+T  LL 
Sbjct: 642 EFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSLLI 701

Query: 581 KSLWKEGRRKEAAAVEERCEKINDVPSLAL 610
                +  +  A ++ E+   +N+  S AL
Sbjct: 702 SIFTSDEYQHHAKSLPEKYHFLNEANSSAL 731



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 94/455 (20%), Positives = 180/455 (39%), Gaps = 49/455 (10%)

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDE---GAIPNSRTYTVMIEHLVNLGKLDSALE 228
           T SY+I++  +    +  EA+E  R + ++      PN  TYT +I+ L      D A  
Sbjct: 169 TVSYSILLKGFCNENRAEEALELLRMMANDHGRSCPPNVVTYTTVIDGLCKAQLFDRAEG 228

Query: 229 VFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQE 288
           VF  +    +K  +  Y  L+ G++ + ++ E   +L +M   G  P      +L  +  
Sbjct: 229 VFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGSL--LNY 286

Query: 289 MGFIQGANEFLREML-----PDKRIKNV---RYYEDGSDDDEDE--NDDNNSGVR---IA 335
           +  +   + FL  M+     PD  I N+    Y + G  D   +  N     G+    + 
Sbjct: 287 LCALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVN 346

Query: 336 YGVQLKPWLDPKALANTLDEWSPEVVSLLADA---KFVWTTRLV---CKVLRHFKSPETA 389
           YG      +D       +D+   +   ++ +      V    LV   C V +  ++ E  
Sbjct: 347 YGA----LIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELV 402

Query: 390 WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID 449
           +          G   +      ++  L   G V    RLI  +   G+R    +   +I 
Sbjct: 403 YEML-----DQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLIS 457

Query: 450 FYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS 509
            Y ++ + D A K F  D  +   +S  ++   Y++LL       R  DA  +  EM+  
Sbjct: 458 GYCLAGRTDEAEKVF--DGMVSIGLSPTEVT--YNTLLHGYCSASRIDDAYCLFREMLRK 513

Query: 510 GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------- 562
           G+ P V T++ +++           ++L+  +  +G + D Y + +++   CK       
Sbjct: 514 GVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEA 573

Query: 563 -----YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                 L +  L  +  T  ++  +L K GR+++A
Sbjct: 574 FKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDA 608



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 1/130 (0%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YNI+++   K+    EA + F+ +  +G   N  T+T+MI  L+  G+ + A+++F+A+
Sbjct: 556 TYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAI 615

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFI 292
           P   +      Y ++ E  +     +E  SL + M  +G  P   M  AL  R+   G I
Sbjct: 616 PANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDI 675

Query: 293 QGANEFLREM 302
             A  +L ++
Sbjct: 676 SRAGAYLSKL 685



 Score = 42.0 bits (97), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 29/129 (22%), Positives = 56/129 (43%)

Query: 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206
           Y+  G ++  +  +N+ RQ     +  +Y  ++    K G+  +A   F Q+I+EG  PN
Sbjct: 319 YAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPN 378

Query: 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
              +  ++  L  + K + A E+   +    I   +  +  L+     V R  E + L++
Sbjct: 379 IVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLID 438

Query: 267 EMRDDGKFP 275
            M   G  P
Sbjct: 439 LMEHVGVRP 447



 Score = 38.9 bits (89), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 32/180 (17%), Positives = 75/180 (41%), Gaps = 1/180 (0%)

Query: 115 SQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTES 174
           + R  E + +   + S       V +  L+  Y ++  ++     + E  ++       +
Sbjct: 462 AGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVT 521

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YN ++    +T +  EA E +  +I+ G   +  TY +++  L     +D A ++F +L 
Sbjct: 522 YNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLC 581

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQ 293
              ++     + I++   +   R ++A  L   +  +G  P     R+  E + E G ++
Sbjct: 582 SKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLE 641


>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like, partial [Cucumis sativus]
          Length = 602

 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 88/193 (45%), Gaps = 1/193 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D AL +   ++    F  +  T + +A+   +S R  E K L+  +         V+F  
Sbjct: 380 DEALRLQNIMQQK-GFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSI 438

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  Y    +       +    ++ K  S  +YN  +  Y K GK  EA +   ++ + G
Sbjct: 439 LIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERG 498

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +P++ TYT +I+     G +D ALE+F+ +P + + R    Y +++ G     R DEA 
Sbjct: 499 LMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAF 558

Query: 263 SLLNEMRDDGKFP 275
            L +EM  +G  P
Sbjct: 559 KLYDEMNKEGIVP 571



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 102/226 (45%), Gaps = 28/226 (12%)

Query: 397 AYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK 456
           A + G+  D  +  + L  L R G++EL    + ++   G+ +   +   ++D  G+ KK
Sbjct: 144 ARKKGFEIDERSCFEFLLALKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVVD--GLCKK 201

Query: 457 ADAA-LKAFHDDRTLCGPISKFK-LMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP- 513
            +    KA  D+    G    FK  ++ Y++LL    + K D   +N +  ++   +V  
Sbjct: 202 GEVVRAKALMDELVCKG----FKPSVITYNTLLNGYIEIK-DVGGVNEILSLMEKNVVDY 256

Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY---------- 563
           +V T++ L+  ++     +  +KLF  + + G+EPD Y++  +I   CK+          
Sbjct: 257 NVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLF 316

Query: 564 --LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
             ++   L+P+A T   L     K G  K A  +      +ND+ S
Sbjct: 317 DEMTERRLVPNAYTYGALINGACKAGEMKAAEMM------VNDMQS 356



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 59/125 (47%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T +A      K  +  E   LI ++     +  +  + +L+     SG+++  L  +NE 
Sbjct: 470 TYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEM 529

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
            Q     +  +Y +++S  +K G+  EA + + ++  EG +P+   Y+ +I  L  +G L
Sbjct: 530 PQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHKVGPL 589

Query: 224 DSALE 228
            S LE
Sbjct: 590 VSGLE 594



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 71/175 (40%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T  AL     K+      + ++ D+ S       V F  LM  Y   G ++  L   
Sbjct: 327 NAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQ 386

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           N  +Q+   +   + NI+ S + ++ +  EA      + + G  PN  +++++I+     
Sbjct: 387 NIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKE 446

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                A  +F  +       +   Y   +E +    + +EA  L+NEM++ G  P
Sbjct: 447 QNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMP 501



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 45/222 (20%), Positives = 90/222 (40%), Gaps = 22/222 (9%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           + Y    ++    + G ++  + ++  ++S G+ +       ++D Y      D AL+  
Sbjct: 327 NAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQ 386

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
           +  +     I  F   ++ S   R+     R  +A  +L  M   G+ P+V +FS L+  
Sbjct: 387 NIMQQKGFEIDAFTCNIIASGFCRS----NRREEAKRLLLTMEERGVAPNVVSFSILIDI 442

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPD 572
           +  + +    ++LF ++ + G  P    +   I+ YCK             +    LMPD
Sbjct: 443 YCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPD 502

Query: 573 AATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHI 614
             T   L      +G R  +  V+   E  N++P L L  ++
Sbjct: 503 TYTYTSL-----IDGERA-SGNVDRALELFNEMPQLGLNRNV 538



 Score = 43.1 bits (100), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 90/201 (44%), Gaps = 25/201 (12%)

Query: 419 HGHVEL-----VDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGP 473
           +G++E+     V+ +++ +  + +    +T  ++I++Y  S K + A K F  D  L   
Sbjct: 231 NGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLF--DEMLKKG 288

Query: 474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
           I     + +Y+S++    K      A  + +EM    +VP+  T+  L+      G+ K 
Sbjct: 289 IEPD--VYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKA 346

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYCK------YLSNSNLMP------DAATKELLKK 581
            + + + ++  GV+ +  +F  L+  YCK       L   N+M       DA T  ++  
Sbjct: 347 AEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIAS 406

Query: 582 SLWKEGRRKEAA----AVEER 598
              +  RR+EA      +EER
Sbjct: 407 GFCRSNRREEAKRLLLTMEER 427


>gi|356511257|ref|XP_003524343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g01390-like [Glycine max]
          Length = 585

 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 76/166 (45%)

Query: 68  DPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD 127
           D + V   L+S P  + A      + S   F H+  T   +  +  ++ R   +K L   
Sbjct: 96  DSYTVNQVLKSHPPMEKAWLFFNWVSSLRGFKHDHYTYTTMLDIFGEAGRVSSMKHLFQQ 155

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           +        SV + ++M W S+SG+ +  +  W++ + +    +  SY   + +     +
Sbjct: 156 MQEKGIKLDSVTYTSMMHWLSSSGNFDEAMQMWDQMKSKGFHPTVVSYTAYIKILFHNQR 215

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
             EA   ++++I     PN  TYTV++++L+  G+   ALE+F  +
Sbjct: 216 VKEATRAYKEMISSRVAPNCHTYTVLMDYLIGSGQYKEALEIFEKM 261



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 91/208 (43%), Gaps = 21/208 (10%)

Query: 371 WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIA 430
           W +  V +VL+     E AW FF WV+   G+ HD Y    ML I    G V  +  L  
Sbjct: 95  WDSYTVNQVLKSHPPMEKAWLFFNWVSSLRGFKHDHYTYTTMLDIFGEAGRVSSMKHLFQ 154

Query: 431 KLRSDGMRLPFSTIRLIIDFYGISKKADAAL--------KAFHDDRTLCGPISKFKLMLL 482
           +++  G++L   T   ++ +   S   D A+        K FH              ++ 
Sbjct: 155 QMQEKGIKLDSVTYTSMMHWLSSSGNFDEAMQMWDQMKSKGFHPT------------VVS 202

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++ ++ L   +R  +A    +EMI S + P+  T++ LM +    G  K   ++F  ++
Sbjct: 203 YTAYIKILFHNQRVKEATRAYKEMISSRVAPNCHTYTVLMDYLIGSGQYKEALEIFEKMQ 262

Query: 543 QNGVEPDAYMFKVLIQAYCKYLSNSNLM 570
           + G +PD     +LI+  C  +  +  M
Sbjct: 263 EAGAQPDKAACNILIER-CSKVGGTEFM 289


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 98/437 (22%), Positives = 173/437 (39%), Gaps = 51/437 (11%)

Query: 106 HALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQ 165
           ++L   L+K+++  E ++ + ++  + F   +  +   +  Y  +G+         E  +
Sbjct: 494 NSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLE 553

Query: 166 RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
              + +      +++ Y K GK  EA   FR ++++G + +++TYTV++  LV  GK++ 
Sbjct: 554 CGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVND 613

Query: 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER 285
           A E+F  +    I      Y  L++GF  +    +A S+ +EM       G    V +  
Sbjct: 614 AEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQ----AGLTSNVIIYN 669

Query: 286 MQEMGF-----IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQL 340
           M   GF     I+ A E L EM       N                       + Y   +
Sbjct: 670 MLLGGFCRSGEIEKAKELLDEMSGKGFPPNA----------------------VTYCTII 707

Query: 341 KPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQP 400
             +     LA     +    +  L    FV+TT LV    R     E A   F     + 
Sbjct: 708 DGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTT-LVDGCCR-LNDVERAITIF--ETNEK 763

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFS-----TIRLIIDFYGISK 455
           G          ++  + + G  EL   +I +L  DG    F      T  ++ID+     
Sbjct: 764 GCASSSAPFNALINWVFKFGKTELTTDMINRLM-DGSFDKFGKPNDVTYNIMIDYLCKEG 822

Query: 456 KADAALKAFHDDRTLCGPISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV 512
             +AA + FH        + K  LM   + Y+SLL    K  R  +  +V +E+I +GI 
Sbjct: 823 NLEAAKELFHH-------MQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIAAGIE 875

Query: 513 PDVQTFSGLMYHFALQG 529
           PD   +S ++  F  +G
Sbjct: 876 PDNIMYSVIINAFLKEG 892



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 100/522 (19%), Positives = 197/522 (37%), Gaps = 74/522 (14%)

Query: 81  NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNF 140
           N D AL + +++ S      ++ + + L   L K +R  + K+L+ +++S      +V +
Sbjct: 260 NVDEALELKKSM-SCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAY 318

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
             L+       + +      +E       +    Y+  + V +K G   +A   F  +I 
Sbjct: 319 SILIDGLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMIT 378

Query: 201 EGAIPNSRTYTVMIEH-----------------------------------LVNLGKLDS 225
            G  P +R Y  +IE                                    + + G LD 
Sbjct: 379 FGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDG 438

Query: 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG----RAMRV 281
           A  +   +     +     Y  L++ F+   RF +A  +L EMR+ G  P      ++ +
Sbjct: 439 AYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLII 498

Query: 282 ALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLK 341
            L + ++M     A  FL EM+           E+G   D              YG  + 
Sbjct: 499 GLSKAKKM---DEARSFLLEMV-----------ENGFKPDA-----------FTYGAFIS 533

Query: 342 PWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPG 401
            +++    A+  D++  E++        V  T L+ +  +  K  E    F   V  + G
Sbjct: 534 GYIEAGEFASA-DKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMV--EQG 590

Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD-AA 460
              D      ++  L ++G V   + +  ++R  G+     +   +ID  G SK  +   
Sbjct: 591 ILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLID--GFSKLGNMQK 648

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
             +  D+    G  S    +++Y+ LL    +      A  +L+EM   G  P+  T+  
Sbjct: 649 ASSIFDEMVQAGLTSN---VIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCT 705

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           ++  +   GD     +LF  ++  G+ PD++++  L+   C+
Sbjct: 706 IIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCR 747



 Score = 45.8 bits (107), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 50/241 (20%), Positives = 99/241 (41%), Gaps = 2/241 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+   L    NAD+A  ++  + S+  FS +         V++K     + K L   + +
Sbjct: 320 ILIDGLLKGRNADAANGLVHEMVSH-GFSIDPMMYDYFICVMSKEGAMEKAKALFDGMIT 378

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                 +  + +L++ +    ++        E ++R  ++S  +Y   +     +G    
Sbjct: 379 FGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDG 438

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A    +++   G  PN   YT +I+  +   +   A+ V   +    I   +  Y  L+ 
Sbjct: 439 AYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLII 498

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA-LERMQEMGFIQGANEFLREMLPDKRIK 309
           G    ++ DEA+S L EM ++G  P      A +    E G    A+++++EML    I 
Sbjct: 499 GLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIP 558

Query: 310 N 310
           N
Sbjct: 559 N 559



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 12/127 (9%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
             Y+SL+  L+K K+  +A + L EM+ +G  PD  T+   +  +   G+     K    
Sbjct: 491 FCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKE 550

Query: 541 VRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGR 588
           + + GV P+  +   LI  YCK             +    ++ DA T  +L   L K G+
Sbjct: 551 MLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGK 610

Query: 589 RKEAAAV 595
             +A  +
Sbjct: 611 VNDAEEI 617



 Score = 40.4 bits (93), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 90/237 (37%), Gaps = 39/237 (16%)

Query: 81  NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNF 140
           N   A SI + +      + N    + L     +S    + K L+ ++S   F   +V +
Sbjct: 645 NMQKASSIFDEM-VQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTY 703

Query: 141 MNLMQWYSTSGDLELVLSTWNEYR------------------------QRAKLL------ 170
             ++  Y  SGDL      ++E +                        +RA  +      
Sbjct: 704 CTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFETNEK 763

Query: 171 ----STESYNIVMSVYAKTGKNFEAVETFRQVIDEG----AIPNSRTYTVMIEHLVNLGK 222
               S+  +N +++   K GK     +   +++D        PN  TY +MI++L   G 
Sbjct: 764 GCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFGKPNDVTYNIMIDYLCKEGN 823

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM 279
           L++A E+F  +    +  T   Y  L+ G+  + R  E  S+ +E+   G  P   M
Sbjct: 824 LEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIAAGIEPDNIM 880


>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Cucumis sativus]
          Length = 606

 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 88/193 (45%), Gaps = 1/193 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D AL +   ++    F  +  T + +A+   +S R  E K L+  +         V+F  
Sbjct: 384 DEALRLQNIMQQK-GFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSI 442

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  Y    +       +    ++ K  S  +YN  +  Y K GK  EA +   ++ + G
Sbjct: 443 LIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERG 502

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +P++ TYT +I+     G +D ALE+F+ +P + + R    Y +++ G     R DEA 
Sbjct: 503 LMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAF 562

Query: 263 SLLNEMRDDGKFP 275
            L +EM  +G  P
Sbjct: 563 KLYDEMNKEGIVP 575



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 102/226 (45%), Gaps = 28/226 (12%)

Query: 397 AYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK 456
           A + G+  D  +  + L  L R G++EL    + ++   G+ +   +   ++D  G+ KK
Sbjct: 148 ARKKGFEIDERSCFEFLLALKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVVD--GLCKK 205

Query: 457 ADAA-LKAFHDDRTLCGPISKFK-LMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP- 513
            +    KA  D+    G    FK  ++ Y++LL    + K D   +N +  ++   +V  
Sbjct: 206 GEVVRAKALMDELVCKG----FKPSVITYNTLLNGYIEIK-DVGGVNEILSLMEKNVVDY 260

Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY---------- 563
           +V T++ L+  ++     +  +KLF  + + G+EPD Y++  +I   CK+          
Sbjct: 261 NVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLF 320

Query: 564 --LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
             ++   L+P+A T   L     K G  K A  +      +ND+ S
Sbjct: 321 DEMTERRLVPNAYTYGALINGACKAGEMKAAEMM------VNDMQS 360



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 59/125 (47%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T +A      K  +  E   LI ++     +  +  + +L+     SG+++  L  +NE 
Sbjct: 474 TYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEM 533

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
            Q     +  +Y +++S  +K G+  EA + + ++  EG +P+   Y+ +I  L  +G L
Sbjct: 534 PQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHKVGPL 593

Query: 224 DSALE 228
            S LE
Sbjct: 594 VSGLE 598



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 71/175 (40%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T  AL     K+      + ++ D+ S       V F  LM  Y   G ++  L   
Sbjct: 331 NAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQ 390

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           N  +Q+   +   + NI+ S + ++ +  EA      + + G  PN  +++++I+     
Sbjct: 391 NIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKE 450

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                A  +F  +       +   Y   +E +    + +EA  L+NEM++ G  P
Sbjct: 451 QNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMP 505



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 45/222 (20%), Positives = 90/222 (40%), Gaps = 22/222 (9%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           + Y    ++    + G ++  + ++  ++S G+ +       ++D Y      D AL+  
Sbjct: 331 NAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQ 390

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
           +  +     I  F   ++ S   R+     R  +A  +L  M   G+ P+V +FS L+  
Sbjct: 391 NIMQQKGFEIDAFTCNIIASGFCRS----NRREEAKRLLLTMEERGVAPNVVSFSILIDI 446

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPD 572
           +  + +    ++LF ++ + G  P    +   I+ YCK             +    LMPD
Sbjct: 447 YCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPD 506

Query: 573 AATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHI 614
             T   L      +G R  +  V+   E  N++P L L  ++
Sbjct: 507 TYTYTSL-----IDGERA-SGNVDRALELFNEMPQLGLNRNV 542



 Score = 43.1 bits (100), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 90/201 (44%), Gaps = 25/201 (12%)

Query: 419 HGHVEL-----VDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGP 473
           +G++E+     V+ +++ +  + +    +T  ++I++Y  S K + A K F  D  L   
Sbjct: 235 NGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLF--DEMLKKG 292

Query: 474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
           I     + +Y+S++    K      A  + +EM    +VP+  T+  L+      G+ K 
Sbjct: 293 IEPD--VYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKA 350

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYCK------YLSNSNLMP------DAATKELLKK 581
            + + + ++  GV+ +  +F  L+  YCK       L   N+M       DA T  ++  
Sbjct: 351 AEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIAS 410

Query: 582 SLWKEGRRKEAA----AVEER 598
              +  RR+EA      +EER
Sbjct: 411 GFCRSNRREEAKRLLLTMEER 431


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 112/503 (22%), Positives = 195/503 (38%), Gaps = 68/503 (13%)

Query: 79  APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDIS---SSKFL- 134
           A N     +I+  L     ++  +  +  L   L KS+R+    ++   +S   SSKF  
Sbjct: 67  AKNPQLYSAIIHVLTGAKLYAKARCLMRDLIQCLQKSRRSRICCSVFNVLSRLESSKFTP 126

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
           NV   F  L+  +S  G +E  L  W  Y+    L + ++ N+V+    K G+     + 
Sbjct: 127 NV---FGVLIIAFSEMGLVEEAL--WVYYKMDV-LPAMQACNMVLDGLVKKGRFDTMWKV 180

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
           +  ++  GA PN  TY  +I+     G    A  +F  +   +I  T   Y IL+ G  G
Sbjct: 181 YGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCG 240

Query: 255 VERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRY 313
             R  EA+S+   MR+ G  P        ++   ++  ++ A E   EML D  + NV  
Sbjct: 241 ESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVT 300

Query: 314 YE---DG-SDDDEDEN------DDNNSGVR---IAYGVQLKPWLDPKALANTLDEWSP-E 359
           +    DG    DE  +      D  + GV      Y   +  +     L+  L   S  E
Sbjct: 301 FGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIE 360

Query: 360 VVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH 419
              +L D   V+T  ++ K L      E A      +  + G+  +      ++    + 
Sbjct: 361 KHEILPD---VFTYSILIKGLCGVDRMEEADGLLQEMK-KKGFLPNAVTYNTLIDGYCKE 416

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL 479
           G++E    + +++   G+     T   +ID Y  + K +AA                   
Sbjct: 417 GNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAA------------------- 457

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           M LY+                    EM+  G++PDV  ++ L+      G+ K   +L  
Sbjct: 458 MGLYT--------------------EMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHK 497

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK 562
            +++ G+ P+ +    LI   CK
Sbjct: 498 EMQEAGLHPNVFTLSCLIDGLCK 520



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 97/451 (21%), Positives = 171/451 (37%), Gaps = 54/451 (11%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L    R  E +++   + +S  L     +  +M  Y     ++  L  + E      L +
Sbjct: 238 LCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPN 297

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
             ++ I++    KT +   A +    +   G +PN   Y  +I+     G L  AL + S
Sbjct: 298 VVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHS 357

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMG 290
            +    I      Y IL++G  GV+R +EA  LL EM+  G  P        ++   + G
Sbjct: 358 EIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEG 417

Query: 291 FIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALA 350
            ++ A E   +M       N+                      I +   +  +     + 
Sbjct: 418 NMEKAIEVCSQMTEKGIEPNI----------------------ITFSTLIDGYCKAGKME 455

Query: 351 NTLDEWSPEVV-SLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYAL 409
             +  ++  V+  LL D   V  T L+     HFK                G T + + L
Sbjct: 456 AAMGLYTEMVIKGLLPDV--VAYTALI---DGHFKD---------------GNTKEAFRL 495

Query: 410 EKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRT 469
            K +     H +V  +  LI  L  DG R+    I+L +   G         K    DR+
Sbjct: 496 HKEMQEAGLHPNVFTLSCLIDGLCKDG-RIS-DAIKLFLAKTGTDTTGS---KTNELDRS 550

Query: 470 LCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
           LC P       ++Y++L++ L    R F A     +M  SG+ PDV T   ++       
Sbjct: 551 LCSPNH-----VMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAM 605

Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
             + V  L + + + G+ P++ +++VL + Y
Sbjct: 606 HLRDVMMLQADILKMGIIPNSSVYRVLAKGY 636



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS L++ L    R  +A  +L+EM   G +P+  T++ L+  +  +G+ +   ++ S + 
Sbjct: 371 YSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMT 430

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
           + G+EP+   F  LI  YCK             +    L+PD      L    +K+G  K
Sbjct: 431 EKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTK 490

Query: 591 EA 592
           EA
Sbjct: 491 EA 492



 Score = 47.0 bits (110), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 97/228 (42%), Gaps = 20/228 (8%)

Query: 395 WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS 454
           WV Y+      + A   +L  L + G  + + ++   + + G      T   +ID  G  
Sbjct: 147 WVYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLID--GCC 204

Query: 455 KKADAALKAFHDDRTLCGPISK--FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV 512
           ++ D  LKAF   R     I K  F  +++Y+ L+R L    R  +A ++   M  SG++
Sbjct: 205 RQGDF-LKAF---RLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGML 260

Query: 513 PDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY--------- 563
           P++ T++ +M  +      K   +L+  +  +G+ P+   F +LI   CK          
Sbjct: 261 PNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKF 320

Query: 564 ---LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
              +++  ++P+      L     K G   EA ++    EK   +P +
Sbjct: 321 LIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDV 368



 Score = 39.7 bits (91), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 12/125 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           +  L+  L K      A   L +M   G+VP++  ++ L+  +   G+      L S + 
Sbjct: 301 FGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIE 360

Query: 543 QNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRK 590
           ++ + PD + + +LI+  C            + +     +P+A T   L     KEG  +
Sbjct: 361 KHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNME 420

Query: 591 EAAAV 595
           +A  V
Sbjct: 421 KAIEV 425


>gi|115461420|ref|NP_001054310.1| Os04g0684500 [Oryza sativa Japonica Group]
 gi|113565881|dbj|BAF16224.1| Os04g0684500 [Oryza sativa Japonica Group]
          Length = 901

 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 86/414 (20%), Positives = 171/414 (41%), Gaps = 25/414 (6%)

Query: 165 QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
           +R    S   + +++  YAK G    A  TF  +   G  PN+  +T ++        + 
Sbjct: 257 ERIPKPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMR 316

Query: 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD-GKFPGRAMRVAL 283
            AL     +    ++ T   Y IL+ GF  +     A +L  E +       G      +
Sbjct: 317 GALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNII 376

Query: 284 ERMQEMGFIQGANEFLREMLPDKRIKNVRYYED---GSDDDEDENDD-------NNSGVR 333
               + G ++ A E +REM  D     +  Y     G    ++EN            G +
Sbjct: 377 HAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFK 436

Query: 334 ---IAYGVQLKPWLDPKALANTLD-EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETA 389
              I+YG  L  ++    +A  L      E   +  + K   T  ++     H      A
Sbjct: 437 PSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNK---TYSMLINGFIHLHDFANA 493

Query: 390 WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID 449
           +  F  +  + G   D      ++    + G+++    ++ K++ + M+      R II+
Sbjct: 494 FAIFEEM-LRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIE 552

Query: 450 FYGISKKADAALKAFH-DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF 508
            Y ++    +AL       R+ C P      ++ Y++L+  L +  +   A++VL++M  
Sbjct: 553 GYAVAGDMKSALDTLDLMRRSGCVPT-----VMTYNALIHGLVRKHKVQRAVSVLDKMSI 607

Query: 509 SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           +GI P+  T++ +M  +A  GD     + F+ ++++G++ D Y+++ L++A CK
Sbjct: 608 AGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCK 661



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 105/248 (42%), Gaps = 7/248 (2%)

Query: 65  RLLDP--FIVT---HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNH 119
           R ++P  F+ T   HA   A +   ALS +E +KS         T   L +  AK   + 
Sbjct: 293 RGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSE-GLELTIVTYSILISGFAKINDSQ 351

Query: 120 ELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM 179
               L  +  +       + + N++  +  SG++E       E  +       + Y+ +M
Sbjct: 352 SADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMM 411

Query: 180 SVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIK 239
             Y       + +  F ++ + G  P+  +Y  ++   V +GK+  AL +   +    IK
Sbjct: 412 HGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIK 471

Query: 240 RTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEF 298
             +K Y +L+ GF+ +  F  A ++  EM   G  P RA+  + +E   +MG +  A   
Sbjct: 472 HNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICI 531

Query: 299 LREMLPDK 306
           L +M  ++
Sbjct: 532 LEKMQKER 539



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 64/139 (46%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  L++    SG ++  L+   E   +    +T  YNI++  +A+ G  +EA +  +Q+ 
Sbjct: 652 YETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMK 711

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           ++G  PN  TYT  I      G +  A +V   +  + +K   K Y  L++G+  V   D
Sbjct: 712 EDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPD 771

Query: 260 EAKSLLNEMRDDGKFPGRA 278
            A     EM+  G  P  A
Sbjct: 772 RALKCFEEMKLAGLKPDEA 790



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 1/142 (0%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y I+M  YA +G   +A E F ++ + G   +   Y  ++      G++ SAL V   +
Sbjct: 616 TYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREM 675

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFI 292
              +I R +  Y IL++G+       EA+ L+ +M++DG  P        +    + G +
Sbjct: 676 SFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDM 735

Query: 293 QGANEFLREMLPDKRIKNVRYY 314
           Q A + + EM+      NV+ Y
Sbjct: 736 QRAEKVIEEMVDVGLKPNVKTY 757



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 6/163 (3%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G    V     ++  L R   V+    ++ K+   G+     T  +I+  Y  S     A
Sbjct: 574 GCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKA 633

Query: 461 LKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
            + F   +      S  KL + +Y +LLR   K  R   A+ V  EM F  I  +   ++
Sbjct: 634 FEYFTKIKE-----SGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYN 688

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            L+  +A +GD    + L   ++++GV P+ + +   I A CK
Sbjct: 689 ILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCK 731



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/138 (18%), Positives = 61/138 (44%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           +++  L+  Y   G +   LS   E        + ++Y+++++ +        A   F +
Sbjct: 440 ISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEE 499

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++  G  P+   Y ++IE    +G +D A+ +   +   R++ +++ +  ++EG+     
Sbjct: 500 MLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGD 559

Query: 258 FDEAKSLLNEMRDDGKFP 275
              A   L+ MR  G  P
Sbjct: 560 MKSALDTLDLMRRSGCVP 577



 Score = 39.3 bits (90), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 30/142 (21%), Positives = 57/142 (40%)

Query: 108 LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA 167
           L     KS R      +  ++S  K    +  +  L+  ++  GD+        + ++  
Sbjct: 655 LLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDG 714

Query: 168 KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227
              +  +Y   ++   K G    A +   +++D G  PN +TYT +I+    +   D AL
Sbjct: 715 VPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRAL 774

Query: 228 EVFSALPLMRIKRTSKQYLILV 249
           + F  + L  +K     Y  LV
Sbjct: 775 KCFEEMKLAGLKPDEASYHCLV 796


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 88/407 (21%), Positives = 172/407 (42%), Gaps = 29/407 (7%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++NI++    +  +   A+    ++   G  P+ +T+T +++  +  G ++ AL +   +
Sbjct: 213 TFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQM 272

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
                  ++    +LV G+    R +E  S ++EM ++G  P R      +  +  +G +
Sbjct: 273 VAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHV 332

Query: 293 QGANEFLREML-----PDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPK 347
           + A E L  ML     PD    N   +      + +E       V I   + L+ +    
Sbjct: 333 KHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEE------AVEILNQMILRDFSPNT 386

Query: 348 ALANTLD---------EWSPEVVSLLADAKF---VWTTRLVCKVLRHFKSPETAWHFFCW 395
              NTL          E + E+  +L        V T   + + L    +   A   F  
Sbjct: 387 VTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEE 446

Query: 396 VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455
           +  + G   D +    ++  L   G +E    L+ ++ S G      T   +ID +  +K
Sbjct: 447 MKTK-GCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNK 505

Query: 456 KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
           + + A + F D+  L G IS+   ++ Y++L+  L K +R  +A  ++++M+  G+ PD 
Sbjct: 506 RIEEAEEIF-DEMELQG-ISRN--VVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDK 561

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            T++ L+ +F   GD K    +   +  NG EPD+  +  LI    K
Sbjct: 562 FTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSK 608



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 80/181 (44%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
           +FS N  T + L + L K  +  E   L   ++S   L     F +L+Q    + +  L 
Sbjct: 381 DFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLA 440

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           +  + E + +       +YN+++      G+  EA+   +++   G   N  TY  +I+ 
Sbjct: 441 MELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDG 500

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
                +++ A E+F  + L  I R    Y  L++G     R +EA  L+++M  +G  P 
Sbjct: 501 FCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPD 560

Query: 277 R 277
           +
Sbjct: 561 K 561



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 103/491 (20%), Positives = 191/491 (38%), Gaps = 48/491 (9%)

Query: 81  NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNF 140
           N + AL I E + +    S N  T++ L     K  R  E+ + I ++S+  F      F
Sbjct: 261 NMNGALRIREQMVAAGCPSSN-VTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTF 319

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
            +L+      G ++  L   +   Q        +YN ++    K G+  EAVE   Q+I 
Sbjct: 320 NSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMIL 379

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
               PN+ TY  +I  L    +++ A E+   L    I      +  L++G         
Sbjct: 380 RDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRL 439

Query: 261 AKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE---D 316
           A  L  EM+  G  P      + ++ +   G ++ A   L+EM      +NV  Y    D
Sbjct: 440 AMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLID 499

Query: 317 GSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLV 376
           G   ++          RI    ++   ++ + ++  +  ++  +  L  + +     +L+
Sbjct: 500 GFCKNK----------RIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLM 549

Query: 377 CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
            ++L                    G   D +    +LT   R G ++    ++  + S+G
Sbjct: 550 DQMLME------------------GLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNG 591

Query: 437 MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLL----YSSLLRTLTK 492
                 T   +I   G+SK     L A    RT+     + K M+L    Y+ +++ L +
Sbjct: 592 CEPDSVTYGTLI--LGLSKAGRVEL-ASRLLRTV-----QLKGMVLAPQTYNPVIKALFR 643

Query: 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN--GVEPDA 550
            KR  +A+ +  EM+  G  PD  T+  +++     G   I + +  +V     G  PD 
Sbjct: 644 EKRTSEAVRLFREMMEKGDPPDAVTYK-VVFRGLCSGGGPIGEAVDFLVEMTDKGFLPDF 702

Query: 551 YMFKVLIQAYC 561
             F +L +  C
Sbjct: 703 SSFLMLAEGLC 713



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 93/453 (20%), Positives = 166/453 (36%), Gaps = 38/453 (8%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAK-SQRNHELKTLIGDIS 129
           ++ H        +  LS ++ + SN  F  ++ T ++L   L +     H L+ L  D+ 
Sbjct: 286 VLVHGYCKEGRIEEVLSFIDEM-SNEGFRPDRFTFNSLVNGLCRIGHVKHALEIL--DVM 342

Query: 130 SSKFLNVSV-NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN 188
             +  +  +  + +L+      G++E  +   N+   R    +T +YN ++S   K  + 
Sbjct: 343 LQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQV 402

Query: 189 FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
            EA E  R +  +G +P+  T+  +I+ L        A+E+F  +           Y +L
Sbjct: 403 EEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNML 462

Query: 249 VEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRI 308
           ++      R +EA SLL EM   G                       N      L D   
Sbjct: 463 IDSLCSRGRLEEALSLLKEMESSG--------------------CSRNVVTYNTLIDGFC 502

Query: 309 KNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAK 368
           KN R  E     DE E    +  V + Y   +      + +          ++  L   K
Sbjct: 503 KNKRIEEAEEIFDEMELQGISRNV-VTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDK 561

Query: 369 FVWTTRLV--CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVD 426
           F + + L   C+     K+ +             G   D      ++  L++ G VEL  
Sbjct: 562 FTYNSLLTYFCRAGDIKKAADIV-----QTMTSNGCEPDSVTYGTLILGLSKAGRVELAS 616

Query: 427 RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSL 486
           RL+  ++  GM L   T   +I      K+   A++ F +      P       + Y  +
Sbjct: 617 RLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDA----VTYKVV 672

Query: 487 LRTLTKCKRDF-DAINVLEEMIFSGIVPDVQTF 518
            R L        +A++ L EM   G +PD  +F
Sbjct: 673 FRGLCSGGGPIGEAVDFLVEMTDKGFLPDFSSF 705



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/295 (20%), Positives = 110/295 (37%), Gaps = 47/295 (15%)

Query: 345 DPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTH 404
           D +A++ +    SP   + L      +T + +   LR     ++      W + QP +  
Sbjct: 47  DQQAVSPSFSTLSPSPTTQLPQN---FTPKQLRDALRRQSDEDSILDLLDWASKQPNFVP 103

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA---- 460
                E++L  L + G    + R++ +++  G  +   T  ++I+ Y   +  D A    
Sbjct: 104 SSVIYEEVLRKLGKDGSFGSMRRVLQEMKHTGCEIRRGTFLILIESYAKFELFDEAVAVV 163

Query: 461 ----------LKAFHDDRTLCGPISKFKLMLL------------------YSSLLRTLTK 492
                     L AF  +  L   +   KL L+                  ++ L++ L +
Sbjct: 164 DIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCR 223

Query: 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYM 552
             +   AI ++EEM   G+ PD +TF+ LM  F  +G+     ++   +   G       
Sbjct: 224 AHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVT 283

Query: 553 FKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
             VL+  YCK             +SN    PD  T   L   L + G  K A  +
Sbjct: 284 VNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEI 338



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 85/188 (45%), Gaps = 7/188 (3%)

Query: 88  IMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWY 147
           +ME LK +  F++N     +L T   ++    +   ++  ++S+     SV +  L+   
Sbjct: 553 LMEGLKPD-KFTYN-----SLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGL 606

Query: 148 STSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNS 207
           S +G +EL        + +  +L+ ++YN V+    +  +  EAV  FR+++++G  P++
Sbjct: 607 SKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDA 666

Query: 208 RTYTVMIEHLVN-LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
            TY V+   L +  G +  A++    +           +L+L EG   +   D    L+N
Sbjct: 667 VTYKVVFRGLCSGGGPIGEAVDFLVEMTDKGFLPDFSSFLMLAEGLCALSMEDTLIKLVN 726

Query: 267 EMRDDGKF 274
            +     F
Sbjct: 727 RVMKQANF 734


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 111/246 (45%), Gaps = 17/246 (6%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSN- 95
           LID +    R N +  L S L    L+P  +T+      L  A   + AL +++ +    
Sbjct: 189 LIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKG 248

Query: 96  --PNF-SHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD 152
             P+  SHN     A+   L K +R  E + L+  + +      +++F  L+     +G 
Sbjct: 249 CVPDVVSHN-----AVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGK 303

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT---GKNFEAVETFRQVIDEGAIPNSRT 209
            +  ++T+ E  +R    +  +YNI++    K    G+  EA+  F  +I++G +P+  T
Sbjct: 304 WKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVT 363

Query: 210 YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
           Y+ +I+ L   GKLD A  +  A+           Y  L+ G  G+E+ DEA  L   M 
Sbjct: 364 YSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMV 423

Query: 270 DDGKFP 275
           + G  P
Sbjct: 424 EKGCVP 429



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 12/124 (9%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           + Y++LL  L    R  DA  + E MI +G  PDV T++ L++ F   G+     K+F  
Sbjct: 11  ITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKIFDG 70

Query: 541 VRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGR 588
             + G  PD   +  LI  +CK             + + NL+PD  T   L   L K GR
Sbjct: 71  AVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGR 130

Query: 589 RKEA 592
             EA
Sbjct: 131 VDEA 134



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 86/409 (21%), Positives = 147/409 (35%), Gaps = 57/409 (13%)

Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL 264
           PN  TY  ++  L N G++  A  ++  +           Y  L+ GF  V   DEA  +
Sbjct: 8   PNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKI 67

Query: 265 LNEMRDDGKFPGRAMRVALERMQEMGFIQG-----ANEFLREMLPDKRIKNVRYYEDGSD 319
            +     G  P      AL      GF +      A   L+ M+ +  + +V  Y     
Sbjct: 68  FDGAVKRGFVPDVVTYNALIN----GFCKADKLDEAQRILQRMVSENLVPDVVTY----- 118

Query: 320 DDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKV 379
                    NS   +  G+     +D   +      +SP V++        ++T L+  +
Sbjct: 119 ---------NS---LVNGLCKNGRVDEARMLIVDKGFSPNVIT--------YST-LISGL 157

Query: 380 LRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
            R  +    A   F  V  Q GY  +V     ++  L +   V     L + L   G+  
Sbjct: 158 CRELRGVSEALKLFGSVLKQ-GYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEP 216

Query: 440 PFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD 498
              T  + ID    + + + AL    D D   C P      ++ +++++  L K KR  +
Sbjct: 217 DAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPD-----VVSHNAVINGLCKEKRVDE 271

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A  +L  M   G  P+  +F+ L+      G  K     F  + + GV+P    + +L+ 
Sbjct: 272 AEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVD 331

Query: 559 AYCKYLSNSNL---------------MPDAATKELLKKSLWKEGRRKEA 592
             CK      +               +PD  T   L   L K G+  +A
Sbjct: 332 GLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDA 380



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 47/102 (46%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN ++S     G+  +A   + ++I  G  P+  TY  ++     +G+LD AL++F   
Sbjct: 12  TYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKIFDGA 71

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                      Y  L+ GF   ++ DEA+ +L  M  +   P
Sbjct: 72  VKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVP 113



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 97/222 (43%), Gaps = 28/222 (12%)

Query: 69  PFIVT-----HALRSAPNADSALSIME-ALKSNPNFSHNQSTLHALATVLAKSQRNHELK 122
           P +VT     H        D AL I + A+K    F  +  T +AL     K+ +  E +
Sbjct: 43  PDVVTYNTLLHGFCKVGELDEALKIFDGAVKRG--FVPDVVTYNALINGFCKADKLDEAQ 100

Query: 123 TLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE--------S 174
            ++  + S   +   V + +L+     +G ++            A++L  +        +
Sbjct: 101 RILQRMVSENLVPDVVTYNSLVNGLCKNGRVD-----------EARMLIVDKGFSPNVIT 149

Query: 175 YNIVMSVYAKTGKNF-EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           Y+ ++S   +  +   EA++ F  V+ +G  P   TY ++I+ L+   +++ A E+FS L
Sbjct: 150 YSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGL 209

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               ++  +  Y + ++G     R ++A  +L +M + G  P
Sbjct: 210 VKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVP 251



 Score = 46.2 bits (108), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 100/263 (38%), Gaps = 9/263 (3%)

Query: 61  LLNDRLLDPFIVTHALRSAPNADSALSIMEALKS-----NPNFSHNQSTLHALATVLAKS 115
           L+ D+   P ++T++   +        + EALK         +     T + L   L K 
Sbjct: 137 LIVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKE 196

Query: 116 QRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
            R +E   L   +        ++ +   +     +G +E  L    +  ++  +    S+
Sbjct: 197 DRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSH 256

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           N V++   K  +  EA      +  +G  PN+ ++  +I      GK   A+  F  +  
Sbjct: 257 NAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLK 316

Query: 236 MRIKRTSKQYLILVEGFVGVE---RFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGF 291
             +K T   Y ILV+G        R  EA +L + M + G+ P      AL + + + G 
Sbjct: 317 RGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGK 376

Query: 292 IQGANEFLREMLPDKRIKNVRYY 314
           +  A   L  M     I NV  Y
Sbjct: 377 LDDARRLLGAMEAKGCIPNVYTY 399



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 60/130 (46%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
            F  N+ T +AL + L    R  + + L   +  + +    V +  L+  +   G+L+  
Sbjct: 5   GFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEA 64

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           L  ++   +R  +    +YN +++ + K  K  EA    ++++ E  +P+  TY  ++  
Sbjct: 65  LKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNG 124

Query: 217 LVNLGKLDSA 226
           L   G++D A
Sbjct: 125 LCKNGRVDEA 134



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 3/85 (3%)

Query: 480 MLLYSSLLRTLTKCKRDF---DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
           ++ Y+ L+  L K +++    +AI + + MI  G VPDV T+S L+      G     ++
Sbjct: 323 VVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARR 382

Query: 537 LFSMVRQNGVEPDAYMFKVLIQAYC 561
           L   +   G  P+ Y +  LI   C
Sbjct: 383 LLGAMEAKGCIPNVYTYNSLISGLC 407


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 98/493 (19%), Positives = 193/493 (39%), Gaps = 47/493 (9%)

Query: 77  RSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNV 136
           R   +A+  ++ M  LK  P FS     + A+A    + +R  EL   + ++     + +
Sbjct: 161 RRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEA-RQPERALELLRQMQEVGYEVGVPL 219

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
              F  L++  +  G +E  L+  +E +          YN+ +  + K G    A + F 
Sbjct: 220 ---FTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFH 276

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           ++  +G  P+  +YT MI  L   G+L  A E+F  +   R    +  Y  ++ G+    
Sbjct: 277 ELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAG 336

Query: 257 RFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
           +F+ A  LL+++++ G  P                +   N  L  +   +++       +
Sbjct: 337 QFENAYKLLDQLKERGCIPS---------------VVSFNSILTCLGKKRKVDEALTLFE 381

Query: 317 GSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEW-----SPEVVSLLADAKFVW 371
               D + N    + +           +D   +A  ++E        E   L  +   + 
Sbjct: 382 AMKKDAEPNSSTYNII-----------IDMLCMAGKVEEAYMIRDEMEHAGLFPN---LL 427

Query: 372 TTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAK 431
           T  ++   L   K  E A+  F   A Q G   +      ++  L + G+V+   RL   
Sbjct: 428 TVNIMVDRLCKAKKFEPAYEMF-ETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFEN 486

Query: 432 LRSDGMRL-PFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRT 489
           +   G    P     LI +F+   +K D   K F + +R  C P      + L ++ +  
Sbjct: 487 MLDTGHNANPVVYTSLIRNFFMHGRKEDGH-KIFKEMNRRGCQPD-----LTLLNTYMDC 540

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
           + K         + E++   G +PDV+++S L++     G  +    +F  ++Q G   D
Sbjct: 541 VFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALD 600

Query: 550 AYMFKVLIQAYCK 562
           A  +  ++  +CK
Sbjct: 601 ARAYNAVVDGFCK 613



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 59/129 (45%)

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
           M     +GD+E   + + + +    L    SY+I++    K G+  E    F  +  +G 
Sbjct: 538 MDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGF 597

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
             ++R Y  +++     GKLD A EV   + + R+  T   Y  +++G   ++R DEA  
Sbjct: 598 ALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYM 657

Query: 264 LLNEMRDDG 272
           L  E +  G
Sbjct: 658 LFEEAKSKG 666



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 69/154 (44%)

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
           + +  DI    FL    ++  L+   + +G      S ++  +Q+   L   +YN V+  
Sbjct: 551 RAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDG 610

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
           + K+GK  +A E   ++  +   P   TY  +I+ L  + +LD A  +F       I+  
Sbjct: 611 FCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELN 670

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              Y  L++GF  V R DEA  +L EM   G  P
Sbjct: 671 VIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTP 704



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/205 (20%), Positives = 91/205 (44%), Gaps = 1/205 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+ H L  A  A    SI  A+K    F+ +    +A+     KS +  +   ++ ++  
Sbjct: 571 ILIHGLTKAGQARETSSIFHAMKQQ-GFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKV 629

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
            +       + +++   +    L+     + E + +   L+   Y+ ++  + K G+  E
Sbjct: 630 KRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDE 689

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A     +++ +G  PN  T+  +++ LV   +++ AL  F ++  M+    +  Y IL+ 
Sbjct: 690 AYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILIN 749

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP 275
           G   V+++++A     EM+  G  P
Sbjct: 750 GLCRVQKYNKAFVFWQEMQKQGLVP 774



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 95/220 (43%), Gaps = 37/220 (16%)

Query: 376 VCKVLRHFKSPETAWHFF--------------CWVAYQPGYTHDVYALEKML-------- 413
           V  VLR  ++P  A  FF               + A  P  +HD+ A+EK+L        
Sbjct: 84  VIPVLRTLRNPSLAAPFFLASSAASPHPLPADAYNAVLPFLSHDLAAMEKVLEEMSVLGY 143

Query: 414 -----------TILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALK 462
                      + L R   ++  +R+IA +R    R  FS   ++I     +++ + AL+
Sbjct: 144 GVPNPACADLVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERALE 203

Query: 463 AFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
                + +   +     + L+++L+R L +  R   A+ +++E+  S + PD+  ++  +
Sbjct: 204 LLRQMQEVGYEVG----VPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCI 259

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
             F   G+  +  K F  ++  G++PD   +  +I   CK
Sbjct: 260 DCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCK 299



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 101/498 (20%), Positives = 181/498 (36%), Gaps = 27/498 (5%)

Query: 78  SAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVS 137
           SA   ++A  +++ LK         S  +++ T L K ++  E  TL   +      N S
Sbjct: 334 SAGQFENAYKLLDQLKERGCIPSVVS-FNSILTCLGKKRKVDEALTLFEAMKKDAEPNSS 392

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
             +  ++     +G +E      +E        +  + NI++    K  K   A E F  
Sbjct: 393 -TYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFET 451

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
               G  PNS TY  +I+ L   G +D A  +F  +           Y  L+  F    R
Sbjct: 452 ASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGR 511

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKR----IKNVRY 313
            ++   +  EM   G  P   +   L    +  F  G  E  R +  D +    + +VR 
Sbjct: 512 KEDGHKIFKEMNRRGCQPDLTL---LNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRS 568

Query: 314 YEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSP-----EVVSLLADAK 368
           Y               +        Q    LD +A    +D +       +   +L + K
Sbjct: 569 YSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMK 628

Query: 369 F------VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHV 422
                  V T   +   L      + A+  F   A   G   +V     ++    + G +
Sbjct: 629 VKRVPPTVATYGSIIDGLAKIDRLDEAYMLF-EEAKSKGIELNVIVYSSLIDGFGKVGRI 687

Query: 423 ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFKLML 481
           +    ++ ++   G+     T   ++D    +++ + AL  F   + + C P +      
Sbjct: 688 DEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNT-----Y 742

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
            YS L+  L + ++   A    +EM   G+VP+V T++ ++   A  G+      LF   
Sbjct: 743 TYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERF 802

Query: 542 RQNGVEPDAYMFKVLIQA 559
           + NG  PDA  F  LI+ 
Sbjct: 803 KANGGTPDAASFNALIEG 820


>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Brachypodium distachyon]
          Length = 628

 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 87/438 (19%), Positives = 170/438 (38%), Gaps = 58/438 (13%)

Query: 151 GDLELVLSTWNEYRQRAKLL-STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRT 209
           G  E V   +NE          T +Y+ ++S + K G+   A+    ++ D G  P ++ 
Sbjct: 204 GQYEKVHELYNEMSNEGHCFPDTVTYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKI 263

Query: 210 YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
           YT++I     L  +  AL +F  +     +     Y  L+ G     RFDEA +  +EMR
Sbjct: 264 YTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMR 323

Query: 270 DDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDN 328
            +G  P    +   +  + + G +  A +   EM   + I +V                 
Sbjct: 324 REGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSV----------------- 366

Query: 329 NSGVRIAYGVQLKPWLDPKALANTLDEW-----------SPEVVSLLADAKFVWTTRLVC 377
                + Y   +K   + K+  + +  W           SP   S+L D  F  T R   
Sbjct: 367 -----VTYNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYSILIDG-FCKTNRTE- 419

Query: 378 KVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM 437
           K +   +  +      C  AY             ++  L +    ++   L  +L+ +  
Sbjct: 420 KAMMLLEEMDEKGFPPCPAAYC-----------SLIDALGKAKRYDIAHELFQELKENCG 468

Query: 438 RLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRD 496
                   ++I   G + + D A+  F +   L C P      +  Y++L+  L +    
Sbjct: 469 SSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPN-----VYAYNALMSGLARAGML 523

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
            +A+  +  M   G +PD+ +++ ++   A  G      ++ S ++Q+ ++PDA  +  +
Sbjct: 524 DEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTV 583

Query: 557 IQAYCKYLSNSNLMPDAA 574
           + A    +S++ L  +AA
Sbjct: 584 LGA----MSHAGLFEEAA 597



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 92/206 (44%), Gaps = 13/206 (6%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR---NHELK 122
           L+D F  T+        + A+ ++E +     F    +   +L   L K++R    HEL 
Sbjct: 408 LIDGFCKTN------RTEKAMMLLEEMDEK-GFPPCPAAYCSLIDALGKAKRYDIAHELF 460

Query: 123 TLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVY 182
             + +   S    V   +  +++    +G L+  ++ ++E  +     +  +YN +MS  
Sbjct: 461 QELKENCGSSSARV---YAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGL 517

Query: 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
           A+ G   EA+ T R++ + G IP+  +Y +++  L   G    A+E+ S +    IK  +
Sbjct: 518 ARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDA 577

Query: 243 KQYLILVEGFVGVERFDEAKSLLNEM 268
             Y  ++        F+EA  L+ EM
Sbjct: 578 VSYNTVLGAMSHAGLFEEAAKLMKEM 603



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 102/260 (39%), Gaps = 34/260 (13%)

Query: 355 EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDV---YALEK 411
           +W P+    L          LV +V++          FF W A +  Y HD     AL +
Sbjct: 68  KWGPDAEKALEVLMLKVDHWLVREVMKTDVGVNVKMQFFRWAAKKRNYEHDTSTYMALIR 127

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL-----IIDFYGISKKADAALKAFHD 466
            L ++ ++G        + K+  + +R P   +       II   G +K    A+  F+ 
Sbjct: 128 CLEVVEQYGE-------MWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAIFYQ 180

Query: 467 DRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSG-IVPDVQTFSGLMYH 524
            +   C P ++      Y+S++  L    +      +  EM   G   PD  T+S L+  
Sbjct: 181 IKVRKCQPTAQ-----AYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALISA 235

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPD 572
           F   G +    +L + ++ NG++P A ++ +LI  + K             + +    PD
Sbjct: 236 FCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRPD 295

Query: 573 AATKELLKKSLWKEGRRKEA 592
             T   L + L K GR  EA
Sbjct: 296 VFTYTELIRGLGKAGRFDEA 315



 Score = 43.5 bits (101), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 89/218 (40%), Gaps = 19/218 (8%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           DV+   +++  L + G  +       ++R +G R     I  +I+F G + + D A+K F
Sbjct: 295 DVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLF 354

Query: 465 HDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINV-LEEMIFSGIVPDVQTFSGLM 522
            +  TL C P      ++ Y+++++ L + K     I+   E M  SGI P   T+S L+
Sbjct: 355 EEMGTLQCIPS-----VVTYNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYSILI 409

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLM 570
             F      +    L   + + G  P    +  LI A  K             L  +   
Sbjct: 410 DGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELKENCGS 469

Query: 571 PDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
             A    ++ K L K GR  +A  + +   K+   P++
Sbjct: 470 SSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNV 507



 Score = 42.7 bits (99), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 36/192 (18%), Positives = 70/192 (36%), Gaps = 1/192 (0%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
             K+ R  +   L+ ++    F      + +L+     +   ++    + E ++     S
Sbjct: 412 FCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELKENCGSSS 471

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
              Y +++    K G+  +AV  F ++   G  PN   Y  ++  L   G LD AL    
Sbjct: 472 ARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMR 531

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMG 290
            +           Y I++ G         A  +L+ M+     P   +    L  M   G
Sbjct: 532 RMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVLGAMSHAG 591

Query: 291 FIQGANEFLREM 302
             + A + ++EM
Sbjct: 592 LFEEAAKLMKEM 603



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 44/230 (19%), Positives = 92/230 (40%), Gaps = 14/230 (6%)

Query: 12  LSKAFTQLQTRSFVRAPFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFI 71
           +S  F +++      +PFT  +        LID      R+  +  L   ++++   P  
Sbjct: 386 ISSWFERMKGSGISPSPFTYSI--------LIDGFCKTNRTEKAMMLLEEMDEKGFPPCP 437

Query: 72  VTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
             +     AL  A   D A  + + LK N   S +      +   L K+ R  +   L  
Sbjct: 438 AAYCSLIDALGKAKRYDIAHELFQELKENCG-SSSARVYAVMIKHLGKAGRLDDAVNLFD 496

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
           +++          +  LM   + +G L+  L+T    ++   +    SYNI+++  AKTG
Sbjct: 497 EMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTG 556

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM 236
               A+E    +      P++ +Y  ++  + + G  + A ++   + ++
Sbjct: 557 GPHRAMEMLSNMKQSAIKPDAVSYNTVLGAMSHAGLFEEAAKLMKEMNVL 606



 Score = 39.3 bits (90), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 45/216 (20%), Positives = 78/216 (36%), Gaps = 36/216 (16%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T  AL +   K  R      L+ ++  +     +  +  L+  +    ++   L  + E 
Sbjct: 228 TYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEM 287

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
           R +       +Y  ++    K G+  EA   F ++  EG  P++     MI  L   G+L
Sbjct: 288 RHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRL 347

Query: 224 DSALEVFSALPLM---------------------RIKRTSK---------------QYLI 247
           D A+++F  +  +                     RI   S                 Y I
Sbjct: 348 DDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYSI 407

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
           L++GF    R ++A  LL EM + G  P  A   +L
Sbjct: 408 LIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSL 443


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 107/499 (21%), Positives = 197/499 (39%), Gaps = 53/499 (10%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + H   S+     A+  ++ ++S+     N  T  +L   L K+ R+ E + +   ++  
Sbjct: 277 ILHGYCSSGQPKEAIGTLKKMRSD-GVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKR 335

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
                   +  L+Q Y+T G L  + +  +   +         +NI++  YAK  K  +A
Sbjct: 336 GLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQA 395

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
           +  F ++   G  PN   Y  +I+ L   G +D A+  F  +    +      Y  L+ G
Sbjct: 396 MLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHG 455

Query: 252 FVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNV 311
               +++D+A+ L+ EM D G        + L            N      + D   K  
Sbjct: 456 LCTCDKWDKAEELILEMLDRG--------ICL------------NTIFFNSIIDSHCKEG 495

Query: 312 RYYEDGSDDDEDENDDNNSGVRIAYG---VQLKPWLDPKALANTLDEWS---PEVVSLLA 365
           R  E     D          VRI      +     +D   LA  +DE +     +VS+  
Sbjct: 496 RVIESEKLFD--------LMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGV 547

Query: 366 DAKFVWTTRLV---CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHV 422
               V    L+   C+V R     + A   F  +    G + ++     +L  L      
Sbjct: 548 KPDIVTYGTLINGYCRVSRM----DDALALFKEMV-SSGVSPNIITYNIILQGLFHTRRT 602

Query: 423 ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK--ADAALKAFHDDRTLCGPISKFKL- 479
                L   +   G +L  ST  +I+  +G+ K    D AL+ F +   LC  ++  +L 
Sbjct: 603 AAAKELYVSITKSGTQLELSTYNIIL--HGLCKNNLTDEALRMFQN---LC--LTDLQLE 655

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
              ++ ++  L KC R  +A ++      +G+VPDV+T+S +  +   QG  + +  LF 
Sbjct: 656 TRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFL 715

Query: 540 MVRQNGVEPDAYMFKVLIQ 558
            + +NG   D+ M   +++
Sbjct: 716 SMEENGCSADSRMLNSIVR 734



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 46/80 (57%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YSSL+  L K  R  +A  + + M   G+ PD+ T+  L+  +A +G    +  L  ++ 
Sbjct: 309 YSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMV 368

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
           +NG++PD ++F +LI AY K
Sbjct: 369 RNGIQPDHHVFNILICAYAK 388



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 102/550 (18%), Positives = 209/550 (38%), Gaps = 50/550 (9%)

Query: 77  RSAPNADSALSIMEALKSNPN-FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLN 135
           R++   D  L  M  L   P+ FS+N + L  L     +SQ   EL  ++ D        
Sbjct: 142 RTSDAMDIVLRRMTELGCIPDVFSYN-NLLKGLCDE-NRSQEALELLHMMADDRGGGSPP 199

Query: 136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF 195
             V++  ++  +   GD +   ST++E   R  L    +Y+ +++   K     +A+E  
Sbjct: 200 DVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVL 259

Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
             ++  G +P+  TY  ++    + G+   A+     +    ++     Y  L+      
Sbjct: 260 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKN 319

Query: 256 ERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREML-----PDKRIK 309
            R  EA+ + + M   G  P  A  R  L+     G +   +  L  M+     PD  + 
Sbjct: 320 GRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVF 379

Query: 310 NVRYYEDGSDDDEDENDDNNSGVR--------IAYGVQLKPWLDPKALANTLDEWSPEVV 361
           N+        +  D+     S +R        + YG  +       ++ + +  +   + 
Sbjct: 380 NILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMID 439

Query: 362 SLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH 419
             L     V+T+ +  +C   +  K+ E             G   +      ++    + 
Sbjct: 440 EGLTPNIIVYTSLIHGLCTCDKWDKAEELILEML-----DRGICLNTIFFNSIIDSHCKE 494

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL 479
           G V   ++L   +   G++    T   +ID   ++ K D A K      +    +     
Sbjct: 495 GRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVS----VGVKPD 550

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG-----DEKIV 534
           ++ Y +L+    +  R  DA+ + +EM+ SG+ P++ T     Y+  LQG          
Sbjct: 551 IVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIIT-----YNIILQGLFHTRRTAAA 605

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKS 582
           ++L+  + ++G + +   + +++   CK             L  ++L  +  T  ++  +
Sbjct: 606 KELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGA 665

Query: 583 LWKEGRRKEA 592
           L K GR  EA
Sbjct: 666 LLKCGRMDEA 675



 Score = 47.0 bits (110), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 88/489 (17%), Positives = 190/489 (38%), Gaps = 51/489 (10%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V + +++     +  ++  +   N   +   +    +YN ++  Y  +G+  EA+ T ++
Sbjct: 237 VTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKK 296

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +  +G  PN  TY+ ++ +L   G+   A ++F ++    ++     Y  L++G+     
Sbjct: 297 MRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGA 356

Query: 258 FDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY-- 314
             E  +LL+ M  +G  P      + +    +   +  A     +M       NV  Y  
Sbjct: 357 LVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGT 416

Query: 315 ------EDGSDDD-----EDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEW--SPEVV 361
                 + GS DD     E   D+  +   I Y   +           T D+W  + E++
Sbjct: 417 VIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLC-------TCDKWDKAEELI 469

Query: 362 SLLADAKFVWTTRLV-------CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT 414
             + D      T          CK  R  +S E  +     +  +P    D+     ++ 
Sbjct: 470 LEMLDRGICLNTIFFNSIIDSHCKEGRVIES-EKLFDLMVRIGVKP----DIITYNTLID 524

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI 474
                G ++   +L+A + S G++    T   +I+ Y    + D AL  F +   +   +
Sbjct: 525 GCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKE--MVSSGV 582

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
           S    ++ Y+ +L+ L   +R   A  +   +  SG   ++ T++ +++           
Sbjct: 583 SPN--IITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEA 640

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKS 582
            ++F  +    ++ +   F ++I A  K              S + L+PD  T  L+ ++
Sbjct: 641 LRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAEN 700

Query: 583 LWKEGRRKE 591
           L ++G  +E
Sbjct: 701 LIEQGSLEE 709



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 14/128 (10%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           + ++S++ +  K  R  ++  + + M+  G+ PD+ T++ L+    L G      KL + 
Sbjct: 482 IFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLAS 541

Query: 541 VRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGR 588
           +   GV+PD   +  LI  YC            K + +S + P+  T  ++ + L+    
Sbjct: 542 MVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHT-- 599

Query: 589 RKEAAAVE 596
           R+ AAA E
Sbjct: 600 RRTAAAKE 607



 Score = 42.4 bits (98), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 37/180 (20%), Positives = 73/180 (40%), Gaps = 5/180 (2%)

Query: 121 LKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS 180
            K ++    S   +  ++    L     T+   EL +S      Q    L   +YNI++ 
Sbjct: 574 FKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQ----LELSTYNIILH 629

Query: 181 VYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR 240
              K     EA+  F+ +        +RT+ +MI  L+  G++D A ++F+A     +  
Sbjct: 630 GLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVP 689

Query: 241 TSKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQGANEFL 299
             + Y ++ E  +     +E   L   M ++G     R +   + ++ + G I  A  +L
Sbjct: 690 DVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTYL 749



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 90/243 (37%), Gaps = 22/243 (9%)

Query: 367 AKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPG--YTHDVYALEKMLTILARHGHVEL 424
           A      R +  V RH  SP  A   +  +A       T  V+    ++    R G ++L
Sbjct: 53  ASIYGLNRALADVARH--SPAAAVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDL 110

Query: 425 VDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS 484
               +  +   G R+   T   ++      K+   A+       T  G I     +  Y+
Sbjct: 111 GFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPD---VFSYN 167

Query: 485 SLLRTLTKCKRDFDAINVLEEMI---FSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
           +LL+ L    R  +A+ +L  M      G  PDV +++ ++  F  +GD       +  +
Sbjct: 168 NLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEM 227

Query: 542 RQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRR 589
              G+ PD   +  +I A CK             +  + +MPD  T   +       G+ 
Sbjct: 228 LDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQP 287

Query: 590 KEA 592
           KEA
Sbjct: 288 KEA 290


>gi|15240032|ref|NP_196258.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171850|sp|Q9FNG8.1|PP366_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g06400, mitochondrial; Flags: Precursor
 gi|9758420|dbj|BAB08962.1| unnamed protein product [Arabidopsis thaliana]
 gi|332003627|gb|AED91010.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1030

 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 106/230 (46%), Gaps = 22/230 (9%)

Query: 381 RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP 440
           R FK P  A  FF WV  + G++H V     ML+I     ++++VD L++++  +G    
Sbjct: 164 RCFKVPHLAMRFFNWVKQKDGFSHRVGIYNTMLSIAGEARNLDMVDELVSEMEKNGCDKD 223

Query: 441 FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDA 499
             T  ++I  YG +KK    L  F   R      S F+L    Y+ ++R+L    R   A
Sbjct: 224 IRTWTILISVYGKAKKIGKGLLVFEKMRK-----SGFELDATAYNIMIRSLCIAGRGDLA 278

Query: 500 INVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF-SMVRQNGV-EPDAYMFKVLI 557
           +   +EM+  GI   ++T+  L+   A      +VQ +   MVR   + E DA+ +  L+
Sbjct: 279 LEFYKEMMEKGITFGLRTYKMLLDCIAKSEKVDVVQSIADDMVRICEISEHDAFGY--LL 336

Query: 558 QAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
           +++C            + L N  +  DA   E+L K L +  R  +A  +
Sbjct: 337 KSFCVSGKIKEALELIRELKNKEMCLDAKYFEILVKGLCRANRMVDALEI 386



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 117/525 (22%), Positives = 209/525 (39%), Gaps = 56/525 (10%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           LL  F V+  ++ A      L ++  LK N     +      L   L ++ R  +   ++
Sbjct: 335 LLKSFCVSGKIKEA------LELIRELK-NKEMCLDAKYFEILVKGLCRANRMVDALEIV 387

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
            DI   + L+ S  +  ++  Y    D+   L  +   ++  +     +Y  +M    K 
Sbjct: 388 -DIMKRRKLDDSNVYGIIISGYLRQNDVSKALEQFEVIKKSGRPPRVSTYTEIMQHLFKL 446

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
            +  +    F ++I+ G  P+S   T ++   +   ++  A +VFS++    IK T K Y
Sbjct: 447 KQFEKGCNLFNEMIENGIEPDSVAITAVVAGHLGQNRVAEAWKVFSSMEEKGIKPTWKSY 506

Query: 246 LILVEGFVGVERFDEAKSLLNEM-------RDDGKFPGRAMRVALERMQEMGFIQGANEF 298
            I V+      R+DE   + N+M       RDD           +  M++ G  +  +  
Sbjct: 507 SIFVKELCRSSRYDEIIKIFNQMHASKIVIRDD------IFSWVISSMEKNGEKEKIH-L 559

Query: 299 LREMLPDKRIKNVRYYEDGSD----DDEDENDDNNSGVRIAYGVQLKPWL------DPKA 348
           ++E+   KR  +     +GS       E+E  D+ +  ++     L P L      D + 
Sbjct: 560 IKEI--QKRSNSYCDELNGSGKAEFSQEEELVDDYNCPQLVQQSALPPALSAVDKMDVQE 617

Query: 349 LANTLD---EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETA-WHFFCWVAYQPGYTH 404
           +   L    +W       L  +   +T  LV +VLRH K    A   FF WV  + GY H
Sbjct: 618 ICRVLSSSRDWE-RTQEALEKSTVQFTPELVVEVLRHAKIQGNAVLRFFSWVGKRNGYKH 676

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           +  A    + +       + +  L  ++R  G  +   T  ++I  YG +   + A++ F
Sbjct: 677 NSEAYNMSIKVAGCGKDFKQMRSLFYEMRRQGCLITQDTWAIMIMQYGRTGLTNIAIRTF 736

Query: 465 HD--DRTLCGPISKFKLML--LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD---VQT 517
            +  D  L    S FK ++  L     R + +  R F       EMI SG VPD   VQ 
Sbjct: 737 KEMKDMGLIPSSSTFKCLITVLCEKKGRNVEEATRTF------REMIRSGFVPDRELVQD 790

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           + G +      G+ K  +     + + G  P    + + I+A C+
Sbjct: 791 YLGCLCEV---GNTKDAKSCLDSLGKIGF-PVTVAYSIYIRALCR 831



 Score = 45.8 bits (107), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 49/247 (19%), Positives = 95/247 (38%), Gaps = 41/247 (16%)

Query: 69  PFIVTHALRSAP-NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD 127
           P +V   LR A    ++ L     +     + HN    +    V    +   ++++L  +
Sbjct: 644 PELVVEVLRHAKIQGNAVLRFFSWVGKRNGYKHNSEAYNMSIKVAGCGKDFKQMRSLFYE 703

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA-KTG 186
           +     L     +  ++  Y  +G   + + T+ E +    + S+ ++  +++V   K G
Sbjct: 704 MRRQGCLITQDTWAIMIMQYGRTGLTNIAIRTFKEMKDMGLIPSSSTFKCLITVLCEKKG 763

Query: 187 KNFE-AVETFRQVIDEGAIPNSR----------------------------------TYT 211
           +N E A  TFR++I  G +P+                                     Y+
Sbjct: 764 RNVEEATRTFREMIRSGFVPDRELVQDYLGCLCEVGNTKDAKSCLDSLGKIGFPVTVAYS 823

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL--LNEMR 269
           + I  L  +GKL+ AL   ++    R       Y  +V G   ++R D  K+L  +N M+
Sbjct: 824 IYIRALCRIGKLEEALSELASFEGERSLLDQYTYGSIVHGL--LQRGDLQKALDKVNSMK 881

Query: 270 DDGKFPG 276
           + G  PG
Sbjct: 882 EIGTKPG 888



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 54/125 (43%)

Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
           GDL+  L   N  ++         Y  ++  + K  +  + +ET +++  E   P+  TY
Sbjct: 868 GDLQKALDKVNSMKEIGTKPGVHVYTSLIVYFFKEKQLEKVLETCQKMEGESCEPSVVTY 927

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
           T MI   ++LGK++ A   F  +         K Y   +       + ++A  LL+EM D
Sbjct: 928 TAMICGYMSLGKVEEAWNAFRNMEERGTSPDFKTYSKFINCLCQACKSEDALKLLSEMLD 987

Query: 271 DGKFP 275
            G  P
Sbjct: 988 KGIAP 992



 Score = 40.0 bits (92), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 1/143 (0%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++ I++SVY K  K  + +  F ++   G   ++  Y +MI  L   G+ D ALE +  +
Sbjct: 226 TWTILISVYGKAKKIGKGLLVFEKMRKSGFELDATAYNIMIRSLCIAGRGDLALEFYKEM 285

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
               I    + Y +L++     E+ D  +S+ ++M    +     A    L+     G I
Sbjct: 286 MEKGITFGLRTYKMLLDCIAKSEKVDVVQSIADDMVRICEISEHDAFGYLLKSFCVSGKI 345

Query: 293 QGANEFLREMLPDKRIKNVRYYE 315
           + A E +RE+   +   + +Y+E
Sbjct: 346 KEALELIRELKNKEMCLDAKYFE 368



 Score = 39.7 bits (91), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 5/149 (3%)

Query: 90  EALKSNPNFSHNQSTL--HALATVLAKSQRNHELKTLIGDISSSKFLNVSVN---FMNLM 144
           EAL    +F   +S L  +   +++    +  +L+  +  ++S K +        + +L+
Sbjct: 837 EALSELASFEGERSLLDQYTYGSIVHGLLQRGDLQKALDKVNSMKEIGTKPGVHVYTSLI 896

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204
            ++     LE VL T  +    +   S  +Y  ++  Y   GK  EA   FR + + G  
Sbjct: 897 VYFFKEKQLEKVLETCQKMEGESCEPSVVTYTAMICGYMSLGKVEEAWNAFRNMEERGTS 956

Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           P+ +TY+  I  L    K + AL++ S +
Sbjct: 957 PDFKTYSKFINCLCQACKSEDALKLLSEM 985


>gi|242074832|ref|XP_002447352.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
 gi|241938535|gb|EES11680.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
          Length = 888

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 91/430 (21%), Positives = 177/430 (41%), Gaps = 35/430 (8%)

Query: 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT 211
           D + V+S +    +R    S   + +++  YAK G    A  TF  +   G  PN+  +T
Sbjct: 237 DWQAVVSAF----ERIPKPSRREFGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFT 292

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
            ++        +  AL     +    ++ T   Y IL+ G+      + A  L  E +  
Sbjct: 293 SLVHAYAVARDMRGALSCVEEMKSEGLEMTVVTYSILIAGYGKTNDAESADKLFKEAKTK 352

Query: 272 -GKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED---GSDDDEDENDD 327
                G      +    + G +  A E +REM  D     +  Y     G    +DE   
Sbjct: 353 LDNLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKC 412

Query: 328 -------NNSGVR---IAYGVQLKPWLD----PKALANTLDEWSPEVVSLLADAKFVWTT 373
                     G R   I+YG  +  ++     PKALA + +    E   +  + K   T 
Sbjct: 413 LIVFERLKECGFRPSIISYGCLINLYVKIGKVPKALAVSKEM---ESHGIKHNNK---TY 466

Query: 374 RLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
            ++     H      A+  F     + G   D      ++    + G+++   R+  +++
Sbjct: 467 SMLINGFIHLHDFANAFSIF-EDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMK 525

Query: 434 SDGMRLPFSTIRLIIDFYGISKKADAALKAFH-DDRTLCGPISKFKLMLLYSSLLRTLTK 492
            + M+    T R II+ + ++     AL       R+ C P      ++ Y++L+  L +
Sbjct: 526 KERMQPSNRTFRPIIEGFAVAGDMKRALDTLDLMRRSGCAPT-----VMTYNALIHGLIR 580

Query: 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYM 552
             +   A++VL++M  +GI P+  T++ +M  +A  GD     + F+ ++++G++ D Y+
Sbjct: 581 KHQVERAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYI 640

Query: 553 FKVLIQAYCK 562
           ++ L++A CK
Sbjct: 641 YETLLRACCK 650



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 88/449 (19%), Positives = 183/449 (40%), Gaps = 49/449 (10%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           + ++M  Y+ + D +  L  +   ++     S  SY  ++++Y K GK  +A+   +++ 
Sbjct: 396 YHSMMHGYTVAQDEKKCLIVFERLKECGFRPSIISYGCLINLYVKIGKVPKALAVSKEME 455

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
             G   N++TY+++I   ++L    +A  +F  +    ++     Y +LVE F  +   D
Sbjct: 456 SHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMD 515

Query: 260 EAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGS 318
            A  +   M+ +   P  R  R  +E     G ++ A + L  M        V  Y    
Sbjct: 516 RAIRIFERMKKERMQPSNRTFRPIIEGFAVAGDMKRALDTLDLMRRSGCAPTVMTYN--- 572

Query: 319 DDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCK 378
                          + +G+  K  ++     + LD+ S   ++ +A  +  +T      
Sbjct: 573 --------------ALIHGLIRKHQVE--RAVSVLDKMS---IAGIAPNEHTYTI----- 608

Query: 379 VLRHFKSP---ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           ++R + +      A+ +F  +  + G   DVY  E +L    + G ++    L       
Sbjct: 609 IMRGYAASGDIGKAFEYFTKIK-ESGLKLDVYIYETLLRACCKSGRMQSA--LAVTREMS 665

Query: 436 GMRLPFSTIRLIIDFYGISKKADA-----ALKAFHDDRTLCGPISKFKLMLLYSSLLRTL 490
             ++P +T    I   G +++ D       +K   +D     P +    +  ++S +   
Sbjct: 666 FQKIPRNTFIYNILIDGWARRGDVWEAADLMKQMKEDGI---PPN----IHTFTSYINAC 718

Query: 491 TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA 550
            K      A NV++EM   G+ P+V+TF+ L+  +A         K F  ++  G++PD 
Sbjct: 719 CKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWAKVSLPDRALKCFEEMKSAGLKPDE 778

Query: 551 YMFKVLIQAYCKYLSNSNLMPDAATKELL 579
             +  L+ +    LS + +M  +    +L
Sbjct: 779 AAYHCLVTS---LLSRATVMEGSTYTGIL 804



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 104/245 (42%), Gaps = 9/245 (3%)

Query: 65  RLLDP--FIVT---HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNH 119
           R ++P  F+ T   HA   A +   ALS +E +KS         T   L     K+    
Sbjct: 282 RGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSE-GLEMTVVTYSILIAGYGKTNDAE 340

Query: 120 ELKTLIGDISSSKFLNVS-VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV 178
               L  + + +K  N++ + + N++  +  SG+++       E  +       + Y+ +
Sbjct: 341 SADKLFKE-AKTKLDNLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSM 399

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI 238
           M  Y       + +  F ++ + G  P+  +Y  +I   V +GK+  AL V   +    I
Sbjct: 400 MHGYTVAQDEKKCLIVFERLKECGFRPSIISYGCLINLYVKIGKVPKALAVSKEMESHGI 459

Query: 239 KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANE 297
           K  +K Y +L+ GF+ +  F  A S+  +M   G  P RA+  + +E   +MG +  A  
Sbjct: 460 KHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIR 519

Query: 298 FLREM 302
               M
Sbjct: 520 IFERM 524


>gi|297839351|ref|XP_002887557.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333398|gb|EFH63816.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 845

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/348 (20%), Positives = 132/348 (37%), Gaps = 40/348 (11%)

Query: 300 REMLPDKR-IKNVRYYEDGSDDDEDENDD-------------NNSGVRIAYGVQLKP--W 343
           R+ +P +  I + RY   G D +   +DD             +   +R+  G    P  +
Sbjct: 221 RKSMPQRTYIDSTRYASGGCDYNVHSSDDRTIISSVEGFGKPSREMMRVTPGTAPTPRQY 280

Query: 344 LDPKALANTLD------EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVA 397
            +P  +   +       +W       L +  F        +VL+   +   A  FF W+ 
Sbjct: 281 CNPGYVVENVSGILRRFKWGHAAEEALHNFGFRMDAYQANQVLKQMDNYANALGFFYWLK 340

Query: 398 YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA 457
            QPG+ HD +    M+  L R      ++RL+ ++  DG +    T   +I  YG +   
Sbjct: 341 RQPGFKHDGHTYTTMVGNLGRAKQFGAINRLLDEMVKDGCKPNTVTYNRLIHSYGRANYL 400

Query: 458 DAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
           + A+  F       C P       + Y +L+    K      A+++ + M  +G+ PD  
Sbjct: 401 NEAMNVFKQMQEAGCEPDR-----VTYCTLIDIHAKAGFLDIAMDMYQRMQAAGLSPDTF 455

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------L 564
           T+S ++      G      +LF  +   G  P+   F ++I  + K             +
Sbjct: 456 TYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDM 515

Query: 565 SNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRG 612
            N+   PD  T  ++ + L   G  +EA  V    ++ N VP   + G
Sbjct: 516 QNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYG 563



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/248 (18%), Positives = 106/248 (42%), Gaps = 6/248 (2%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           +D +     L+   N  +AL     LK  P F H+  T   +   L ++++   +  L+ 
Sbjct: 314 MDAYQANQVLKQMDNYANALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINRLLD 373

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
           ++        +V +  L+  Y  +  L   ++ + + ++        +Y  ++ ++AK G
Sbjct: 374 EMVKDGCKPNTVTYNRLIHSYGRANYLNEAMNVFKQMQEAGCEPDRVTYCTLIDIHAKAG 433

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
               A++ ++++   G  P++ TY+V+I  L   G L +A  +F  +           + 
Sbjct: 434 FLDIAMDMYQRMQAAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFN 493

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM--- 302
           I++        ++ A  L  +M++ G  P +    + +E +   GF++ A     EM   
Sbjct: 494 IMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRK 553

Query: 303 --LPDKRI 308
             +PD+ +
Sbjct: 554 NWVPDEPV 561


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 100/540 (18%), Positives = 207/540 (38%), Gaps = 81/540 (15%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+  +L +  + D A+S+  +L+     + ++ T   L + LAK  +      L+ ++ +
Sbjct: 163 IILRSLCARGDVDRAVSLFSSLRRR-GVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPN 221

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE-YRQRAKLLSTESYNIVMSVYAKTGKNF 189
                 +V +  L+     +G  E  +  W +  R      +  +Y +++    K G+  
Sbjct: 222 YGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFK 281

Query: 190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV 249
           EA E + +++      ++ TY ++I  L   G +DSA  V+S +    +      Y  L+
Sbjct: 282 EAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLI 341

Query: 250 EGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIK 309
           +GF  V R  EA    +     G        +  + + + G +  A E L+++       
Sbjct: 342 KGFCEVGRTGEAWKFWDSTGFSGIRQITTYNIMTKGLLDSGMVSEATELLKQL------- 394

Query: 310 NVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF 369
                         END + S  ++ +G  +    +        + ++     +L DA+ 
Sbjct: 395 --------------ENDASCSPDKVTFGTLIHGLCE--------NGYANRAFEILEDAR- 431

Query: 370 VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
                                          G   DV++   M+    + G     + + 
Sbjct: 432 -----------------------------NSGEELDVFSYSSMINRFCKDGRTHDANEVY 462

Query: 430 AKLRSDGMRLPFSTI--RLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLL 487
             +  DG + P S +   LI  F  +SK  DA           C P      ++ Y++L+
Sbjct: 463 KNMVKDGCK-PNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPT-----IITYNTLI 516

Query: 488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE 547
             L K ++  +A ++ +EM+  G  PD++T++ L+          +  +++  +   G++
Sbjct: 517 DGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQ 576

Query: 548 PDAYMFKVLI----------QAYCKYLS--NSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
            D  +  +LI          +A+C YL     N  P+  T   L    ++ G   +AA++
Sbjct: 577 VDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASL 636



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 103/459 (22%), Positives = 178/459 (38%), Gaps = 66/459 (14%)

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           ++YNI++      G    AV  F  +   G  P+  TY+ ++  L    +LD+AL++   
Sbjct: 159 QTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDE 218

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM-RDDGKFPGRAM-RVALERMQEMG 290
           +P   ++  +  Y  L+ G      F++A  +  ++ RD G  P  A  +V L+ + ++G
Sbjct: 219 MPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLG 278

Query: 291 FIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALA 350
             + A E    M+                       +N+    + YG+ +        L 
Sbjct: 279 RFKEAGEVWSRMMA----------------------NNHQADTVTYGILI------HGLC 310

Query: 351 NTLD-EWSPEVVSLLADAKFVWTTRLVCKVLRHF---KSPETAWHFFCWVAYQPGYTHDV 406
            + D + +  V S +  A  V    +   +++ F        AW F  W +        +
Sbjct: 311 RSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKF--WDSTGFSGIRQI 368

Query: 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLP----FSTIRLIIDFYGISKK--ADAA 460
                M   L   G V     L+ +L +D    P    F T+      +G+ +   A+ A
Sbjct: 369 TTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTL-----IHGLCENGYANRA 423

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
            +   D R     +  F     YSS++    K  R  DA  V + M+  G  P+   ++ 
Sbjct: 424 FEILEDARNSGEELDVFS----YSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNA 479

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC---KYLSNSNLMPDAATKE 577
           L+  F          K++  +  NG  P    +  LI   C   KY   S+L     TKE
Sbjct: 480 LINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSL-----TKE 534

Query: 578 LLKKSLWKEGRRKEAAAVEERC-EKINDVPSLALRGHIW 615
           +L++  +K   R  A+ +   C +K  DV   ALR  IW
Sbjct: 535 MLERG-FKPDIRTYASLIRGLCRDKKVDV---ALR--IW 567



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/172 (20%), Positives = 73/172 (42%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T + L   L K+++  E  +L  ++    F      + +L++       +++ L  W+E 
Sbjct: 511 TYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEI 570

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
                 +    +NI++      GK  EA   + ++ ++   PN  TY  +++    +G +
Sbjct: 571 LDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSI 630

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           D A  +++A+    +K     Y   ++G     R  E   LLNE+   G  P
Sbjct: 631 DKAASLWTAILDNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMP 682



 Score = 44.3 bits (103), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 23/159 (14%)

Query: 458 DAALKAFHDDRTL--CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSG----I 511
           DAAL AF D  +L  C P  +      +++LL    + +R  DA      +        I
Sbjct: 100 DAALAAFRDLPSLLGCNPGVRS-----HNTLLDAFVRARRYSDADAFFASLSHGAFGRRI 154

Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY-------- 563
            P++QT++ ++     +GD      LFS +R+ GV PD   +  L+    K+        
Sbjct: 155 APNLQTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALD 214

Query: 564 ----LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
               + N  +  DA     L    ++ G  ++A  V E+
Sbjct: 215 LLDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQ 253


>gi|218197756|gb|EEC80183.1| hypothetical protein OsI_22045 [Oryza sativa Indica Group]
          Length = 577

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 103/220 (46%), Gaps = 16/220 (7%)

Query: 370 VWTTRLVCKV-LRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRL 428
           +WT   +  V  R  K+ E    F   V  + G+  D      +L   A+ G VE V+R+
Sbjct: 101 LWTYNAMVSVHGRCGKAQEAELMFKELV--EKGFQPDAVTYNSLLYAFAKEGDVERVERV 158

Query: 429 IAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFKLMLLYSSLL 487
             +L   G R    T   +I  YG   + D AL  + + R + C P +     + Y+ L+
Sbjct: 159 CEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDA-----VTYTVLV 213

Query: 488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE 547
            +L K  R  +A  VLEEM  +G+ P + TFS L+  +A  G +   ++ F  + ++GV+
Sbjct: 214 DSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVK 273

Query: 548 PDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEG 587
           PD   + V++  + +      LM       +L +++ K+G
Sbjct: 274 PDRLAYLVMLDVFARSDETRKLM-------VLYRAMIKDG 306



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 18/194 (9%)

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSL 486
           L+ ++R  G+R    T   +I         D A+  F +   + C P      +  Y+++
Sbjct: 53  LLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPD-----LWTYNAM 107

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           +    +C +  +A  + +E++  G  PD  T++ L+Y FA +GD + V+++   + + G 
Sbjct: 108 VSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGF 167

Query: 547 EPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAA 594
             D   +  +I  Y K             +      PDA T  +L  SL K  R  EA  
Sbjct: 168 RKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGK 227

Query: 595 VEERCEKINDVPSL 608
           V E        P+L
Sbjct: 228 VLEEMADAGLKPTL 241



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 16/182 (8%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN ++SV+ + GK  EA   F++++++G  P++ TY  ++      G ++    V   L
Sbjct: 103 TYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEEL 162

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFI 292
                ++    Y  ++  +  + R D A  L +EMR  G  P      V ++ + +M  I
Sbjct: 163 VKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRI 222

Query: 293 QGANEFLREMLPDKRIKN---------VRYYEDGSDDDEDENDDN--NSGV---RIAYGV 338
             A + L EM  D  +K            Y + G  DD +   D    SGV   R+AY V
Sbjct: 223 SEAGKVLEEM-ADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLV 281

Query: 339 QL 340
            L
Sbjct: 282 ML 283



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 10/205 (4%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
            F  +  T ++L    AK      ++ +  ++  + F    + +  ++  Y   G L+L 
Sbjct: 131 GFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLA 190

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           L  ++E R         +Y +++    K  +  EA +   ++ D G  P   T++ +I  
Sbjct: 191 LGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICA 250

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL---NEMRDDGK 273
               G+ D A   F  +    +K     YL++++ F    R DE + L+     M  DG 
Sbjct: 251 YAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFA---RSDETRKLMVLYRAMIKDGY 307

Query: 274 FPG----RAMRVALERMQEMGFIQG 294
            P     + +  AL +  E   I+G
Sbjct: 308 KPDDGLYQVLLAALAKGNEHDEIEG 332


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 94/437 (21%), Positives = 175/437 (40%), Gaps = 24/437 (5%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           + +L+  +   G L    S ++E        +   Y  ++S Y K G+   A   + ++ 
Sbjct: 428 YSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMT 487

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
            +G  PN+ T+T +I  L +  ++  A ++F  +    +      Y +L+EG        
Sbjct: 488 GKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTV 547

Query: 260 EAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVR------ 312
            A  LL+EM + G  P     R  +  +   G +  A EF+ ++  +++  N        
Sbjct: 548 RAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALL 607

Query: 313 --YYEDGSDDDEDENDDNNSGVRIA-----YGVQLKPWLDPKALANTLDEWSPEVVSLLA 365
             Y ++G  DD  +      G  +A     Y V +   L  +   + +D         L 
Sbjct: 608 HGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLR 667

Query: 366 DAKFVWTTRLVCKVLRHFKSPETAWHFFCW-VAYQPGYTHDVYALEKMLTILARHGHVEL 424
               ++TT +        K+      F  W +    G   +V     ++  L + G ++ 
Sbjct: 668 PDNVLYTTMIDANA----KAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDK 723

Query: 425 VDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS 484
            + L  ++ +       +T    +D+       + A++  HD   L G ++     + Y+
Sbjct: 724 AELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQ-LHD-VLLEGFLAN---TVTYN 778

Query: 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544
            L+R   K  R  +A  VL  MI SGI PD  ++S ++Y +  +GD K   KL+  +   
Sbjct: 779 ILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNR 838

Query: 545 GVEPDAYMFKVLIQAYC 561
           GV PD   +  LI   C
Sbjct: 839 GVNPDTVAYNFLIYGCC 855



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 64/142 (45%)

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
           NL+      G++       N+ ++     S   YN +++   K GK  EA   F  +  +
Sbjct: 325 NLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHK 384

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G  PN  TY+++I+     GKLD AL     +  + IK T   Y  L+ G   + +   A
Sbjct: 385 GLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAA 444

Query: 262 KSLLNEMRDDGKFPGRAMRVAL 283
           KSL +EM  +G  P   +  +L
Sbjct: 445 KSLFDEMIANGLKPNVVIYTSL 466



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 86/455 (18%), Positives = 177/455 (38%), Gaps = 57/455 (12%)

Query: 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217
           S  + YR +    +T  +++++  Y +  +  + +   R ++D G +P  RT + ++  L
Sbjct: 132 SFLDSYR-KCNFSTTLGFDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGL 190

Query: 218 VNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR 277
           + + +   AL +F  +    ++     Y  +V     ++ F  A+ ++  M   G     
Sbjct: 191 IRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGC---- 246

Query: 278 AMRVALERMQEMGFIQGANEFLREMLPDKR------IKNVRYYEDGSDDDEDENDDNNSG 331
            + VA             N F+R +  ++R      IKN+  Y+               G
Sbjct: 247 DLSVAT-----------YNVFIRGLCKNQRVWEAVEIKNLLSYK---------------G 280

Query: 332 VRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWH 391
           +R   G      L    +     E   E+++ + +  FV +   V  ++   +       
Sbjct: 281 LRADVGTYCTLVLGLCKVEEF--EAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGS 338

Query: 392 FFCWV--AYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID 449
            F  V    + G    ++    ++  + + G ++  + L   +   G+     T  ++ID
Sbjct: 339 AFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILID 398

Query: 450 FYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS 509
            +    K D AL  F    T  G  +    +  YSSL+    K  +   A ++ +EMI +
Sbjct: 399 SFCKRGKLDVALH-FLGKMTEVGIKAT---VYPYSSLISGHCKLGKLRAAKSLFDEMIAN 454

Query: 510 GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------ 563
           G+ P+V  ++ L+  +  +G+     +L+  +   G+ P+ Y F  LI   C        
Sbjct: 455 GLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEA 514

Query: 564 ------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                 +   N++P+  T  +L +   KEG    A
Sbjct: 515 NKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRA 549



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 93/241 (38%), Gaps = 2/241 (0%)

Query: 75  ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFL 134
            LR   N  SA  ++  +K     + +    +AL   + K  +  E ++L  ++      
Sbjct: 329 GLRKKGNIGSAFDLVNKVKK-FGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLF 387

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
              V +  L+  +   G L++ L    +  +     +   Y+ ++S + K GK   A   
Sbjct: 388 PNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSL 447

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
           F ++I  G  PN   YT +I      G+L +A  ++  +    I   +  +  L+ G   
Sbjct: 448 FDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCH 507

Query: 255 VERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRY 313
             R  EA  L  EM +    P      V +E   + G    A E L EM+    + +   
Sbjct: 508 ANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYT 567

Query: 314 Y 314
           Y
Sbjct: 568 Y 568



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 66/139 (47%), Gaps = 1/139 (0%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           +V +  ++   + +G+L++    W+       L +  +Y  +++   K G   +A    R
Sbjct: 670 NVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCR 729

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           +++   ++PN  TY   +++L + G ++ A+++   L L      +  Y IL+ GF  + 
Sbjct: 730 EMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVL-LEGFLANTVTYNILIRGFCKLG 788

Query: 257 RFDEAKSLLNEMRDDGKFP 275
           R  EA  +L  M D G  P
Sbjct: 789 RIQEAAEVLVNMIDSGISP 807



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 88/441 (19%), Positives = 164/441 (37%), Gaps = 50/441 (11%)

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           K G    A +   +V   G  P+   Y  +I  +   GKLD A  +F+ +    +     
Sbjct: 332 KKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDV 391

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDG----KFPGRAMRVALERMQEMGFIQGANEFL 299
            Y IL++ F    + D A   L +M + G     +P  ++   +    ++G ++ A    
Sbjct: 392 TYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSL---ISGHCKLGKLRAAKSLF 448

Query: 300 REMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPE 359
            EM+ +    NV  Y         E + +N+        +L   +  K ++     ++  
Sbjct: 449 DEMIANGLKPNVVIYTSLISGYCKEGELHNA-------FRLYHEMTGKGISPNTYTFTAL 501

Query: 360 VVSLLADAKFVWTTRLVCKVLRHFKSP-ETAWHFFCWVAYQPGYTHDVYALEKMLTILAR 418
           +  L    +     +L  +++     P E  ++       + G T   +           
Sbjct: 502 ISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAF----------- 550

Query: 419 HGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFK 478
               EL+D ++ K    G+     T R +I     + +   A + F +D  L G   K  
Sbjct: 551 ----ELLDEMVEK----GLVPDTYTYRPLISGLCSTGRVSEA-REFMND--LQGEQQKLN 599

Query: 479 LMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF 538
            M  +S+LL    K  R  DA++   EM+  G+  D+  +S L+Y    Q D + +  L 
Sbjct: 600 EMC-FSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLL 658

Query: 539 SMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKE 586
             +   G+ PD  ++  +I A  K             + +   +P+  T   L   L K 
Sbjct: 659 KQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKI 718

Query: 587 GRRKEAAAVEERCEKINDVPS 607
           G   +A  +       N +P+
Sbjct: 719 GLMDKAELLCREMLASNSLPN 739



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 78/178 (43%), Gaps = 1/178 (0%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T  AL   L K     + + L  ++ +S  L     +   + + ++ G++E  +   
Sbjct: 704 NVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQ-L 762

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           ++      L +T +YNI++  + K G+  EA E    +ID G  P+  +Y+ +I      
Sbjct: 763 HDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRR 822

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA 278
           G L  A++++ ++    +   +  Y  L+ G        +A  L ++M   G  P RA
Sbjct: 823 GDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRA 880



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 24/105 (22%), Positives = 53/105 (50%), Gaps = 4/105 (3%)

Query: 458 DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
           +   ++F D    C     F   L +  L++T  + +R+ D + V+  M+  GI+P ++T
Sbjct: 127 EGLFESFLDSYRKC----NFSTTLGFDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRT 182

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            SG++         ++   LF  +  +G+ PD Y++  ++++ C+
Sbjct: 183 LSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCE 227



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 35/174 (20%), Positives = 66/174 (37%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T   L + L  + R  E +  + D+   +     + F  L+  Y   G L+  L    E 
Sbjct: 567 TYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREM 626

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
             R   +    Y++++    +       ++  +Q+ D+G  P++  YT MI+     G L
Sbjct: 627 LGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNL 686

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR 277
             A  ++  +           Y  L+ G   +   D+A+ L  EM      P +
Sbjct: 687 KMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQ 740



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 71/182 (39%)

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
           +    S N  T  AL + L  + R  E   L G++     +   V +  L++ +   G+ 
Sbjct: 487 TGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNT 546

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
                  +E  ++  +  T +Y  ++S    TG+  EA E    +  E    N   ++ +
Sbjct: 547 VRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSAL 606

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           +      G+LD AL+    +    +      Y +L+ G +  +       LL +M D G 
Sbjct: 607 LHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGL 666

Query: 274 FP 275
            P
Sbjct: 667 RP 668


>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Glycine max]
          Length = 556

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 93/193 (48%), Gaps = 1/193 (0%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L K++   E  +L  ++     +  ++ F +L+     SG +  V    ++ R R++L  
Sbjct: 359 LCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLAD 418

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
             +Y+ ++    K     +A+  F+++I +   P+  TYT++I+ L   G+L  A EVF 
Sbjct: 419 VITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCKGGRLKIAQEVFQ 478

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMG 290
            L +       + Y +++ GF     FDEA +LL++M D+G  P      + +  + E  
Sbjct: 479 HLLIKGYHLDIRTYTVMISGFCKAGLFDEALALLSKMEDNGCIPNAITFDIIICALFEKD 538

Query: 291 FIQGANEFLREML 303
               A + LREM+
Sbjct: 539 ENDKAEKLLREMI 551



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 89/406 (21%), Positives = 162/406 (39%), Gaps = 60/406 (14%)

Query: 209 TYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           +Y  +I  L  +G+  +A+++   L    IK     Y I+++     +   EA +L +EM
Sbjct: 176 SYGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEM 235

Query: 269 RDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVR--YYEDGSDDDEDEN 325
                +P       L      MG +  A   L EM    ++KN+    Y      D    
Sbjct: 236 NAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEM----KLKNINPDVYTFSILIDALGK 291

Query: 326 DDNNSGVRIAYGVQLKPWLDPKALA-NTL-DEWSPEVVSLLADAKFVWTTRLVCKVLRHF 383
           +      +I   V +K ++ P  +  N+L D +   +V+ +  AK+V+ +          
Sbjct: 292 EGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYF--LVNEVKHAKYVFNS---------- 339

Query: 384 KSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFST 443
                          Q G T  V +   M+  L +   V+    L  +++   +     T
Sbjct: 340 -------------MAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTIT 386

Query: 444 IRLIIDFYGISKKADAA----LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK-CKRDFD 498
              +ID  G+ K    A    L     DR      S+   ++ YSSL+  L K C  D  
Sbjct: 387 FNSLID--GLCKSGRIAYVWDLVDKMRDR------SQLADVITYSSLIDALCKNCHLD-Q 437

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           AI + ++MI   I PD+ T++ L+      G  KI Q++F  +   G   D   + V+I 
Sbjct: 438 AIALFKKMITQEIQPDMYTYTILIDGLCKGGRLKIAQEVFQHLLIKGYHLDIRTYTVMIS 497

Query: 559 AYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
            +CK             + ++  +P+A T +++  +L+++    +A
Sbjct: 498 GFCKAGLFDEALALLSKMEDNGCIPNAITFDIIICALFEKDENDKA 543



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 77/191 (40%), Gaps = 33/191 (17%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G T D+  L  ++      G + L   ++A +   G      T+  +I    +  +   A
Sbjct: 99  GITSDLVTLNILINCFCHLGQITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKA 158

Query: 461 LKAFHDD-------------RTLCGPISKF-------KLM------------LLYSSLLR 488
           LK FHDD              TL   + K        +LM            ++Y+ ++ 
Sbjct: 159 LK-FHDDVVALEFQLDRISYGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIID 217

Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548
           +L K K   +A N+  EM    I P+V T++ L+Y F + G       L + ++   + P
Sbjct: 218 SLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINP 277

Query: 549 DAYMFKVLIQA 559
           D Y F +LI A
Sbjct: 278 DVYTFSILIDA 288



 Score = 42.0 bits (97), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 50/125 (40%), Gaps = 12/125 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ ++  L K K   +AI++ EEM    ++P+  TF+ L+      G    V  L   +R
Sbjct: 352 YTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMR 411

Query: 543 QNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRK 590
                 D   +  LI A C            K +    + PD  T  +L   L K GR K
Sbjct: 412 DRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCKGGRLK 471

Query: 591 EAAAV 595
            A  V
Sbjct: 472 IAQEV 476



 Score = 42.0 bits (97), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 12/137 (8%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++L+          +A+ +L EM    I PDV TFS L+     +G  K  + + +++ 
Sbjct: 247 YTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMM 306

Query: 543 QNGVEPDAYMFKVLIQAY--------CKYLSN----SNLMPDAATKELLKKSLWKEGRRK 590
           +  V+PD   +  L+  Y         KY+ N    S + P   +  ++   L K     
Sbjct: 307 KAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVD 366

Query: 591 EAAAVEERCEKINDVPS 607
           EA ++ E  +  N +P+
Sbjct: 367 EAISLFEEMKHKNVIPN 383



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 15/120 (12%)

Query: 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           VL  M+ + + PDV T++ L+  + L  + K  + +F+ + Q+GV P    + ++I   C
Sbjct: 301 VLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLC 360

Query: 562 KY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA 609
           K             + + N++P+  T   L   L K GR    A V +  +K+ D   LA
Sbjct: 361 KTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGR---IAYVWDLVDKMRDRSQLA 417



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 1/138 (0%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y  ++  +   G   EAV    ++  +   P+  T++++I+ L   GK+ +A  V + +
Sbjct: 246 TYTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVM 305

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFI 292
               +K     Y  LV+G+  V     AK + N M   G  PG ++  + ++ + +   +
Sbjct: 306 MKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMV 365

Query: 293 QGANEFLREMLPDKRIKN 310
             A     EM     I N
Sbjct: 366 DEAISLFEEMKHKNVIPN 383


>gi|168024892|ref|XP_001764969.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683778|gb|EDQ70185.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 497

 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 97/220 (44%), Gaps = 1/220 (0%)

Query: 80  PNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
           P +D+A    +   + P F H+  T  AL     K Q    +  ++ ++  +     +V 
Sbjct: 3   PKSDAARKFFKWATTQPGFQHDVYTYAALIDYYGKRQNFSAMDQVVAEMKEAGCPLSTVT 62

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           F +L+ W+S    L      W +        +   Y+  +    K G + EA+  F+++ 
Sbjct: 63  FTSLVVWHSQVKKLTGTRRVWQQMLDSGIKPNEYIYSSYIDALVKGGCHEEAIMVFKEMQ 122

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           + G  PN  TY+V+I  LV   +L++A E++  +  ++ K  S  Y +L+         +
Sbjct: 123 EAGCRPNIFTYSVVILSLVESMQLEAACELYERMTKLQYKPNSTAYSVLIRAHAKGPDME 182

Query: 260 EAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEF 298
           +A     EM D G  P +++R  L E + + G +  A E 
Sbjct: 183 KAIYFYREMIDSGLTPSQSLRSLLSEALTKQGRLNEAEEL 222



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 36/228 (15%)

Query: 387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
           + A  FF W   QPG+ HDVY    ++    +  +   +D+++A+++  G   P ST+  
Sbjct: 6   DAARKFFKWATTQPGFQHDVYTYAALIDYYGKRQNFSAMDQVVAEMKEAG--CPLSTVTF 63

Query: 447 IIDFYGISKKADAALKAFHDD-RTLCGPISKFKLML---------LYSSLLRTLTKCKRD 496
                        +L  +H   + L G    ++ ML         +YSS +  L K    
Sbjct: 64  ------------TSLVVWHSQVKKLTGTRRVWQQMLDSGIKPNEYIYSSYIDALVKGGCH 111

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
            +AI V +EM  +G  P++ T+S ++         +   +L+  + +   +P++  + VL
Sbjct: 112 EEAIMVFKEMQEAGCRPNIFTYSVVILSLVESMQLEAACELYERMTKLQYKPNSTAYSVL 171

Query: 557 IQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           I+A+ K             + +S L P  + + LL ++L K+GR  EA
Sbjct: 172 IRAHAKGPDMEKAIYFYREMIDSGLTPSQSLRSLLSEALTKQGRLNEA 219


>gi|255564599|ref|XP_002523294.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537382|gb|EEF39010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 544

 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 113/526 (21%), Positives = 212/526 (40%), Gaps = 69/526 (13%)

Query: 55  SNSLSSLLNDRLLDPFIVTHALRSAP----------------NADSALSIME-ALKSNPN 97
           SNS  S  N+ L + + VT  ++  P                N D AL I E A K  PN
Sbjct: 32  SNSTGSP-NNPLPESYTVTPPIKPWPQRLYPKRLVSMITRQQNLDLALQIFEYAGKYQPN 90

Query: 98  FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVL 157
           FSHN  T  ++   L++++    ++ L+ D+  S+       F+N+++ Y  +G  +  L
Sbjct: 91  FSHNYDTYDSIIHKLSRARVFGPVELLLSDLHKSQIKCGENIFINVIRNYGLAGKPDFAL 150

Query: 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET-FRQVIDE-GAIPNSRTYTVMIE 215
            T+   +      S  S N +++ + +  K ++ V   F+    + G +PN  T  ++I+
Sbjct: 151 RTFIRIQDFNVQRSVRSLNTLLNAFVQN-KRYDLVHAMFKNCRSKYGVLPNVFTCNILIK 209

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            L     ++SA++V   +P M +      Y  ++ G+        A  +  E+ D G  P
Sbjct: 210 ALCKKNDVESAVKVLDEMPAMGMIPNVVTYTTILGGYSSRGDMVNANKVFGELFDRGWLP 269

Query: 276 -GRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRI 334
                 + +    E G +  A + + +M            E+G + +E           +
Sbjct: 270 DATTYTILMNGYCEQGRLADAIKLMDDM-----------GENGVEPNE-----------V 307

Query: 335 AYGVQLKPWLDPKALA---NTLDEWSPEVVSLLADAKFVWTTRLVCK---VLRHFKSPET 388
            YGV ++ +   K      N LD+        + + ++V ++ L CK   VL      E 
Sbjct: 308 TYGVMVEAYCKEKKAGEARNLLDD--------MLERQYVPSSALCCKVIDVLCEAGKIEE 359

Query: 389 AWHFFCWV-AYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLI 447
           A     W    +     D   +  ++  L + G V    +L  +     +    +   LI
Sbjct: 360 ACEL--WKRMLKKNCMPDNAIMSTLIHWLCKEGKVWEARKLFGEFERGAIPSLLTYNTLI 417

Query: 448 IDFYGISKKAD-AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
               G+ +K + +      DD    G          Y+ L++  +K     + I +LEEM
Sbjct: 418 A---GMCEKGELSEAGKLWDDMMEKGYKPN---AFTYNMLIKGFSKIGNAKEGIRILEEM 471

Query: 507 IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM-VRQNGVEPDAY 551
           + +  +P+  T++ L+      G E  V K+ SM +   GV+ D++
Sbjct: 472 LDNRCMPNKSTYAILIEELCKMGMEGEVDKVVSMAMASGGVDSDSW 517



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 119/286 (41%), Gaps = 46/286 (16%)

Query: 370 VWTTRLVCKVLRHFKSPETAWHFFCWVA-YQPGYTHDVYALEKMLTILARHGHVELVDRL 428
           ++  RLV  + R  ++ + A   F +   YQP ++H+    + ++  L+R      V+ L
Sbjct: 59  LYPKRLVSMITRQ-QNLDLALQIFEYAGKYQPNFSHNYDTYDSIIHKLSRARVFGPVELL 117

Query: 429 IAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF---------HDDRTLCGPISKFKL 479
           ++ L    ++   +    +I  YG++ K D AL+ F            R+L   ++ F  
Sbjct: 118 LSDLHKSQIKCGENIFINVIRNYGLAGKPDFALRTFIRIQDFNVQRSVRSLNTLLNAFVQ 177

Query: 480 MLLYSSLLRTLTKCKRDF-----------------------DAINVLEEMIFSGIVPDVQ 516
              Y  +      C+  +                        A+ VL+EM   G++P+V 
Sbjct: 178 NKRYDLVHAMFKNCRSKYGVLPNVFTCNILIKALCKKNDVESAVKVLDEMPAMGMIPNVV 237

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------L 564
           T++ ++  ++ +GD     K+F  +   G  PDA  + +L+  YC+             +
Sbjct: 238 TYTTILGGYSSRGDMVNANKVFGELFDRGWLPDATTYTILMNGYCEQGRLADAIKLMDDM 297

Query: 565 SNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLAL 610
             + + P+  T  ++ ++  KE +  EA  + +   +   VPS AL
Sbjct: 298 GENGVEPNEVTYGVMVEAYCKEKKAGEARNLLDDMLERQYVPSSAL 343


>gi|449435890|ref|XP_004135727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g16830-like [Cucumis sativus]
          Length = 665

 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 100/514 (19%), Positives = 200/514 (38%), Gaps = 71/514 (13%)

Query: 85  ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHE-LKTLIGDISSSKFLNVSVNFMNL 143
           ALS        PNF HN +    +  V+++  + +E +  ++G + S   +  +  F+ L
Sbjct: 78  ALSFFMWCAKQPNFFHNPAAFDYMVGVVSRLMKQYETVNGILGGLESVGNVTKAQTFLLL 137

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK---------------- 187
           ++ Y   G  +LV   ++   +     +T + N++M V  K G+                
Sbjct: 138 LRIYWRGGMYDLVFEAFDHMDRYGFTPNTFARNVIMDVLFKVGRADVALKVFKETLLPNF 197

Query: 188 -NFEAV--------------ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
             F  V              +TFR ++  G  PN  T+ V++  L  LG+L  A +V+  
Sbjct: 198 LTFNIVLCNLSKTKDLIGIGDTFRCMLRMGYCPNPGTFEVVLNGLCKLGRLAEAYQVWGI 257

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFI 292
           +    I  +   + I+++GF  + R +EA SL+ +M+  G  P       L +    G+I
Sbjct: 258 MTTFGISMSVNIWTIMIDGFCRLRRTEEASSLVKKMKKSGCSPNIVTYTTLIK----GYI 313

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
                        +RI       D  D       +  S   I Y V +      +   + 
Sbjct: 314 YA-----------QRI------SDAFDVLSIIESEGPSPDLILYNVLIDSLAKNERYNDA 356

Query: 353 LDEW-SPEVVSLLADA-KFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
           L  + S    ++L D   F      +C   R F  P+    F   V        D+ A  
Sbjct: 357 LSIFLSLHKRNILPDCYTFSSLLNTICLSKRLFLLPKLVDGFLVEV--------DLVACN 408

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470
            +L+ L + G   L   L   + + G+     ++  ++     S++   A++ ++     
Sbjct: 409 SLLSYLGKAGFAALALELYNNMVNGGLMPDKYSVLGVLTGLCESRRIGEAVRLYN----- 463

Query: 471 CGPISKFKLM--LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
            G +  +  +   +++ ++  L K  +   AI +    +      DV ++S  +    L 
Sbjct: 464 -GILLNYTGVDAHIHTVIIDGLIKAGKFHSAIRIFRRNLLEENSLDVVSYSVAIRGLLLV 522

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           G       L++ +++ G+ P+ ++  V++  +CK
Sbjct: 523 GRNTEASNLYNYMKEAGINPNGHVCNVMLSTFCK 556



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 127/301 (42%), Gaps = 30/301 (9%)

Query: 347 KALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDV 406
           K L N LDE   +  S   + + + T  LV   L +  S   A  FF W A QP + H+ 
Sbjct: 38  KILHNRLDEDIEQKFS--ENRQVILTNDLVYTTLLNCSSDLIALSFFMWCAKQPNFFHNP 95

Query: 407 YALEKMLTILAR-HGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF- 464
            A + M+ +++R     E V+ ++  L S G      T  L++  Y      D   +AF 
Sbjct: 96  AAFDYMVGVVSRLMKQYETVNGILGGLESVGNVTKAQTFLLLLRIYWRGGMYDLVFEAFD 155

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
           H DR    P +  +     + ++  L K  R   A+ V +E     ++P+  TF+ ++ +
Sbjct: 156 HMDRYGFTPNTFAR-----NVIMDVLFKVGRADVALKVFKET----LLPNFLTFNIVLCN 206

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPD 572
            +   D   +   F  + + G  P+   F+V++   CK             ++   +   
Sbjct: 207 LSKTKDLIGIGDTFRCMLRMGYCPNPGTFEVVLNGLCKLGRLAEAYQVWGIMTTFGISMS 266

Query: 573 AATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA-----LRGHIWAVSSADLTRVHS 627
                ++     +  R +EA+++ ++ +K    P++      ++G+I+A   +D   V S
Sbjct: 267 VNIWTIMIDGFCRLRRTEEASSLVKKMKKSGCSPNIVTYTTLIKGYIYAQRISDAFDVLS 326

Query: 628 I 628
           I
Sbjct: 327 I 327



 Score = 43.1 bits (100), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 124/309 (40%), Gaps = 40/309 (12%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHAL--------RSAPNADSALSIMEALK 93
           +ID      R+  ++SL   +      P IVT+          +   +A   LSI+E+  
Sbjct: 273 MIDGFCRLRRTEEASSLVKKMKKSGCSPNIVTYTTLIKGYIYAQRISDAFDVLSIIESEG 332

Query: 94  SNPNF----------SHNQSTLHALATVLAKSQRN-----HELKTLIGDISSSK------ 132
            +P+           + N+    AL+  L+  +RN     +   +L+  I  SK      
Sbjct: 333 PSPDLILYNVLIDSLAKNERYNDALSIFLSLHKRNILPDCYTFSSLLNTICLSKRLFLLP 392

Query: 133 -----FLNVSVNFM---NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK 184
                FL V V+ +   +L+ +   +G   L L  +N       +    S   V++   +
Sbjct: 393 KLVDGFL-VEVDLVACNSLLSYLGKAGFAALALELYNNMVNGGLMPDKYSVLGVLTGLCE 451

Query: 185 TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQ 244
           + +  EAV  +  ++      ++  +TV+I+ L+  GK  SA+ +F    L         
Sbjct: 452 SRRIGEAVRLYNGILLNYTGVDAHIHTVIIDGLIKAGKFHSAIRIFRRNLLEENSLDVVS 511

Query: 245 YLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREML 303
           Y + + G + V R  EA +L N M++ G  P G    V L    +        + L+EM+
Sbjct: 512 YSVAIRGLLLVGRNTEASNLYNYMKEAGINPNGHVCNVMLSTFCKEKKFALVKQMLQEMI 571

Query: 304 PDKRIKNVR 312
            D  IK  R
Sbjct: 572 -DLGIKMSR 579


>gi|77552391|gb|ABA95188.1| salt-inducible protein, putative [Oryza sativa Japonica Group]
          Length = 938

 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 102/468 (21%), Positives = 184/468 (39%), Gaps = 79/468 (16%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+Q +   G     ++ + +++     L    YNI M  Y K G   EAV+   ++   G
Sbjct: 488 LLQCFRKLGMTSEAIAYFLKFKDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKYGG 547

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+   YT +I      G++ +A +VF  +    I+     Y IL  GF       E  
Sbjct: 548 LTPDKIHYTCLISGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVF 607

Query: 263 SLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGAN----EFLREMLPDKRIKNVRYYEDG 317
            LL+ M D G  P      +A+     +GF +G N    E L  ++ +K I ++      
Sbjct: 608 DLLDRMADQGLEPNSLTYGIAI-----VGFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSS 662

Query: 318 SDDDEDENDDNNSGVRIAYGVQLKPWLDPKAL--------ANTLDEWS-PEVVSLLADAK 368
                           +  G  L  W D   +         N +D +S  ++++ L    
Sbjct: 663 ----------------MVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVG 706

Query: 369 FVWTTRLVCKV-LRHFKSPETAWH-----FFC----------WV--AYQPGYTHDVYALE 410
            V     VCK+ L H   P+   +      +C          W     Q G + DV    
Sbjct: 707 NVQGASNVCKIMLEHDVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQRGLSVDVIVYT 766

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY----------GISKKADA- 459
            ++    + G ++   +L  ++ + G++       +++D +          GI+K+  + 
Sbjct: 767 ILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSF 826

Query: 460 ALKAFHDDRTLCGPISKFKLMLL------YSSLLRTLTKCKRDF--DAINVLEEMIFSGI 511
            L+A H+       +S  K M +      Y+ L+    KCK ++  +A  + +EM+  G+
Sbjct: 827 LLRANHNKL-----LSSMKDMQIEPDVPCYTVLID--GKCKAEYLVEARELFDEMLQKGL 879

Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
            PD   ++ L+  +  QG+    + L   +   G+EPD   F VL Q+
Sbjct: 880 TPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIEPDELTFSVLNQS 927



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 28/194 (14%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           +++  L+  Y  +GD++     +++  QR   +    Y I+M+ Y K G+  EA + F Q
Sbjct: 728 ISYSKLISIYCQNGDMDKAHLWFHDMVQRGLSVDVIVYTILMNGYCKAGRLQEACQLFVQ 787

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALE---------------------VFSALPLM 236
           + + G  P+   YTV+++     G L   L+                     + S++  M
Sbjct: 788 MTNLGIKPDVIAYTVLLD-----GHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDM 842

Query: 237 RIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGA 295
           +I+     Y +L++G    E   EA+ L +EM   G  P      AL       G I  A
Sbjct: 843 QIEPDVPCYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKA 902

Query: 296 NEFLREMLPDKRIK 309
            + L+EM+ DK I+
Sbjct: 903 EDLLQEMI-DKGIE 915



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 100/521 (19%), Positives = 200/521 (38%), Gaps = 99/521 (19%)

Query: 77  RSAP-NADSALSIMEALKSNP-------------NFSHNQSTLHALATVLAKSQRNHELK 122
           RS P  +DS +  +  LK  P              F+H+ ST   +  +L+ S++   L 
Sbjct: 178 RSRPLCSDSVVQTLHCLKRRPAIAFAYFKDTQSIGFNHDFSTYSEMIQILSHSRQGKMLV 237

Query: 123 TLIGDISSSKFLN------------------VSVNFM--NLMQWYSTSGDLELVLSTWNE 162
           +L  ++ SS   +                   S++FM   L++   T  D++  +  ++ 
Sbjct: 238 SLFSELVSSSNASGPEILPLVDHHRRTCATPCSLSFMVDCLIKACITCYDVQATICLFSG 297

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
             +   + S  ++N+++   A+TG+    +  + ++      P+  T+ ++   L    K
Sbjct: 298 ICRLGVVPSVWTWNLLLKFIAETGEYEMVLAAYNEMKCFQLTPDVYTFAIVTRSLFQAKK 357

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA 282
           +D AL+V++ +  M +K  ++ Y   + G     ++D A  +L E+  + K P  AM   
Sbjct: 358 VDEALQVWAEMTEMGVKPDARGYSSFLIGLCDCGKYDLAYVILQEINRE-KVPVEAMAY- 415

Query: 283 LERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKP 342
                              M+ D   K +R        DE E                  
Sbjct: 416 ------------------NMVMDGLCKEMRL-------DEAE------------------ 432

Query: 343 WLDPKALANTLDEWS-PEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPG 401
               K L N   + S P+V        + +  R  CK+     + +   H+   V++  G
Sbjct: 433 ----KLLENKARQGSNPDVYG------YSYLIRSYCKMGNLINAVD---HYEAMVSH--G 477

Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL 461
              + + +  +L    + G          K +  G+ L      + +D Y  +   + A+
Sbjct: 478 IETNCHIVSYLLQCFRKLGMTSEAIAYFLKFKDSGLHLDKVIYNIAMDTYCKNGNMNEAV 537

Query: 462 KAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL 521
           K  ++ +   G ++  K+   Y+ L+          +A  V EEM+ + I PD+ T++ L
Sbjct: 538 KLLNEMKY--GGLTPDKIH--YTCLISGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNIL 593

Query: 522 MYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
              F   G    V  L   +   G+EP++  + + I  +C+
Sbjct: 594 ASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCR 634



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 30/219 (13%)

Query: 401 GYTHDVYALEKMLTILARHGH-VELVDRLIAKLRSDGMRLPFSTIRLIIDFY---GISKK 456
           G   DVY    ++    + G+ +  VD   A + S G+      +  ++  +   G++ +
Sbjct: 442 GSNPDVYGYSYLIRSYCKMGNLINAVDHYEA-MVSHGIETNCHIVSYLLQCFRKLGMTSE 500

Query: 457 ADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
           A A    F D        S   L  ++Y+  + T  K     +A+ +L EM + G+ PD 
Sbjct: 501 AIAYFLKFKD--------SGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKYGGLTPDK 552

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------ 563
             ++ L+  + L+G+ +  Q++F  + +  +EPD   + +L   +CK             
Sbjct: 553 IHYTCLISGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDR 612

Query: 564 LSNSNLMPDAATKELLKKSLWKEGRRKEAA----AVEER 598
           +++  L P++ T  +      + G   EA      VEE+
Sbjct: 613 MADQGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEK 651



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 83/209 (39%), Gaps = 2/209 (0%)

Query: 107 ALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR 166
           A+ T       N  +K L+ ++         +++  L+  Y   G+++     + E  + 
Sbjct: 523 AMDTYCKNGNMNEAVK-LLNEMKYGGLTPDKIHYTCLISGYCLKGEMQNAQQVFEEMLKA 581

Query: 167 AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
                  +YNI+ S + K+G   E  +   ++ D+G  PNS TY + I      G L  A
Sbjct: 582 NIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNLSEA 641

Query: 227 LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALER 285
             +F+ +    I      Y  +V G++     D A  L   +   G      +    +  
Sbjct: 642 EVLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLIND 701

Query: 286 MQEMGFIQGANEFLREMLPDKRIKNVRYY 314
           +  +G +QGA+   + ML    + +V  Y
Sbjct: 702 LCRVGNVQGASNVCKIMLEHDVVPDVISY 730



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 14/129 (10%)

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           S L+  L +      A NV + M+   +VPDV ++S L+  +   GD       F  + Q
Sbjct: 696 SKLINDLCRVGNVQGASNVCKIMLEHDVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQ 755

Query: 544 NGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRK- 590
            G+  D  ++ +L+  YCK             ++N  + PD     +L     KE  ++ 
Sbjct: 756 RGLSVDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQG 815

Query: 591 -EAAAVEER 598
            E  A E R
Sbjct: 816 WEGIAKERR 824


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 90/459 (19%), Positives = 169/459 (36%), Gaps = 92/459 (20%)

Query: 174 SYNIVMSVYAKTGKNFEAV-ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           ++N ++    + G  FE V E   Q+ + G  P+ R Y  +I+ +   G L+ A E+ + 
Sbjct: 253 TFNTLIGYLCRNGL-FERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNR 311

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM-RDDGKFPGRAMRVALERMQEMGF 291
           +P   +K     Y  +++G    ER+ EA+ LL+EM + D         + ++   + G 
Sbjct: 312 MPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGL 371

Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKAL-- 349
           +    E L +ML    + +V  Y                   +  G   +  +D   +  
Sbjct: 372 VDRVIELLEQMLSHGCMPDVITY-----------------TTVINGFCKEGLIDEAVMLL 414

Query: 350 -ANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYA 408
            + +     P  VS      +    + +C   R   + E           Q G   +   
Sbjct: 415 KSMSSCGCKPNTVS------YTIVLKGLCSAGRWVDAEELMSQMI-----QQGCPPNPVT 463

Query: 409 LEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR 468
              ++  L + G VE    L+ ++  +G      +   +ID  G + K + AL+      
Sbjct: 464 FNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALE------ 517

Query: 469 TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
                                            +L  M+  GI P+   +S +    + +
Sbjct: 518 ---------------------------------LLNVMVNKGISPNTIIYSSIACALSRE 544

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATK 576
           G    V ++F  ++   +  DA ++  +I + CK            Y+ ++  MP+ +T 
Sbjct: 545 GRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTY 604

Query: 577 ELLKKSLWKEGRRKEAAA-VEERCEKINDVPSLALRGHI 614
            +L K L  EG  KEA   + E C +       ALR H+
Sbjct: 605 TMLIKGLASEGLAKEAQELLSELCSR------GALRKHL 637



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 69/144 (47%), Gaps = 1/144 (0%)

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           +E  Q+   L   ++NI++  + + G     +E   Q++  G +P+  TYT +I      
Sbjct: 345 SEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKE 404

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AM 279
           G +D A+ +  ++     K  +  Y I+++G     R+ +A+ L+++M   G  P     
Sbjct: 405 GLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTF 464

Query: 280 RVALERMQEMGFIQGANEFLREML 303
              +  + + G ++ A E L++ML
Sbjct: 465 NTLINFLCKKGLVEQAIELLKQML 488



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 49/105 (46%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           +T SY IV+      G+  +A E   Q+I +G  PN  T+  +I  L   G ++ A+E+ 
Sbjct: 425 NTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELL 484

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             + +         Y  +++G     + +EA  LLN M + G  P
Sbjct: 485 KQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISP 529



 Score = 46.6 bits (109), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+++L+ L   KR  D   +++EM+     P++ TF+ L+ +    G  + V ++ + + 
Sbjct: 219 YNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMS 278

Query: 543 QNGVEPDAYMFKVLIQAYCK--YLSNSN----------LMPDAATKELLKKSLWKEGRRK 590
           ++G  PD  M+  +I   CK  +L  +N          L P+      + K L    R K
Sbjct: 279 EHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWK 338

Query: 591 EA 592
           EA
Sbjct: 339 EA 340



 Score = 43.5 bits (101), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 81/201 (40%), Gaps = 18/201 (8%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           ++     ++  L R+G  E V  ++A++   G          IID  GI K+    +   
Sbjct: 250 NIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIID--GICKEGHLEVANE 307

Query: 465 HDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
             +R    P    K  ++ Y+++L+ L   +R  +A  +L EM       D  TF+ L+ 
Sbjct: 308 ILNRM---PSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVD 364

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMP 571
            F   G    V +L   +  +G  PD   +  +I  +C            K +S+    P
Sbjct: 365 FFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKP 424

Query: 572 DAATKELLKKSLWKEGRRKEA 592
           +  +  ++ K L   GR  +A
Sbjct: 425 NTVSYTIVLKGLCSAGRWVDA 445



 Score = 42.4 bits (98), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 39/194 (20%), Positives = 81/194 (41%), Gaps = 4/194 (2%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           A+  L+ M +    PN     + L  L +    ++R  E + L+ ++         V F 
Sbjct: 305 ANEILNRMPSYGLKPNVVCYNTVLKGLCS----AERWKEAEELLSEMFQKDCPLDDVTFN 360

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            L+ ++  +G ++ V+    +      +    +Y  V++ + K G   EAV   + +   
Sbjct: 361 ILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSC 420

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G  PN+ +YT++++ L + G+   A E+ S +           +  L+         ++A
Sbjct: 421 GCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQA 480

Query: 262 KSLLNEMRDDGKFP 275
             LL +M  +G  P
Sbjct: 481 IELLKQMLVNGCSP 494



 Score = 40.8 bits (94), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 66/166 (39%), Gaps = 1/166 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F  L+ +    G +E  +    +           SY+ V+    K GK  EA+E    
Sbjct: 462 VTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNV 521

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++++G  PN+  Y+ +   L   G+++  +++F  +    I+  +  Y  ++        
Sbjct: 522 MVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWE 581

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREM 302
            D A      M  +G  P  +    L + +   G  + A E L E+
Sbjct: 582 TDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627


>gi|224143615|ref|XP_002336062.1| predicted protein [Populus trichocarpa]
 gi|222869847|gb|EEF06978.1| predicted protein [Populus trichocarpa]
          Length = 626

 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 113/516 (21%), Positives = 211/516 (40%), Gaps = 53/516 (10%)

Query: 56  NSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKS 115
           +SLS  L  R++DP ++TH          AL         P F+HN  T H++   L+ S
Sbjct: 44  DSLSQSLVARVIDPHLLTHH-------SLALGFFNWASQQPGFTHNSLTYHSVLKSLSFS 96

Query: 116 QRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
           ++ + +++L+    +      S  +  ++      G  ++  S +NE + ++  L TE+ 
Sbjct: 97  RQFNAIESLLKRAKAQNLTLDSSIYRFVVDSLIKRGKTQMAFSVFNEIKSQSLDLGTETS 156

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           N +++     G    A++ F ++ + G   ++  + V I  L   G L   L +   +  
Sbjct: 157 NSLLASLGSDGCFNNAMKVFDEMNNRGIGFSTIGFGVFIWRLCRNGDLGEVLRLVDEVEG 216

Query: 236 MR-IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQ 293
              +   S   +++V G     R  EA   LNE+R  G  P   A RV  E  + +G + 
Sbjct: 217 RNSLINGSVIAVLIVHGLCEGSRTSEALRALNELRIRGWKPDFIAYRVVAEAFRSLGSVF 276

Query: 294 GANEFL---REMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALA 350
             NE L   R++    R  + R +  G   +    +    G  IA G    P  D     
Sbjct: 277 DVNEVLKMKRKLGVAPRSNDYREFILGLITERRIYEAKELGEVIASGN--FPMED----- 329

Query: 351 NTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
           + L+     V ++                      P +A  FF +V  + G    +  L 
Sbjct: 330 DVLNALIGSVSTI---------------------DPYSAMKFFHFVIGK-GKFPTLLTLS 367

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRT- 469
            +   L +HG ++ +  +   L S+       +  ++  F  +  +   A +   + R  
Sbjct: 368 NLCRNLCKHGKIDELLEVYRVLSSNEYFSDMESYNVMFSFLCMGGRVREAYEVLQEMRKK 427

Query: 470 -LCGPISKFKLMLLYSSLLRTLTKCKRDF--DAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
            L   IS      +Y+SL+  L  C+ D    A  + +EM   G   +++T++ L+  F+
Sbjct: 428 GLDPDIS------MYNSLIEVL--CREDLLRPAKRLWDEMFVIGCGGNLKTYNILIGKFS 479

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
             G  +   +LF+ + + GV PDA   + L++A C+
Sbjct: 480 EIGQIEEATRLFNHMLEKGVTPDATTHRFLLEALCQ 515



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 93/237 (39%), Gaps = 8/237 (3%)

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
           ++ NF      L+AL   ++       +K     I   KF  + +   NL +     G +
Sbjct: 321 ASGNFPMEDDVLNALIGSVSTIDPYSAMKFFHFVIGKGKFPTL-LTLSNLCRNLCKHGKI 379

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           + +L  +            ESYN++ S     G+  EA E  +++  +G  P+   Y  +
Sbjct: 380 DELLEVYRVLSSNEYFSDMESYNVMFSFLCMGGRVREAYEVLQEMRKKGLDPDISMYNSL 439

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           IE L     L  A  ++  + ++      K Y IL+  F  + + +EA  L N M + G 
Sbjct: 440 IEVLCREDLLRPAKRLWDEMFVIGCGGNLKTYNILIGKFSEIGQIEEATRLFNHMLEKGV 499

Query: 274 FP-GRAMRVALERM-QEMGFIQGANEFLRE-----MLPDKRIKNVRYYEDGSDDDED 323
            P     R  LE + QE  F    + F +      ML    +K +     G  D E+
Sbjct: 500 TPDATTHRFLLEALCQETMFETAVDVFYKHVNHDVMLAQNILKTLILNLCGKADSEE 556


>gi|222616383|gb|EEE52515.1| hypothetical protein OsJ_34721 [Oryza sativa Japonica Group]
          Length = 820

 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 102/468 (21%), Positives = 184/468 (39%), Gaps = 79/468 (16%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+Q +   G     ++ + +++     L    YNI M  Y K G   EAV+   ++   G
Sbjct: 370 LLQCFRKLGMTSEAIAYFLKFKDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKYGG 429

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+   YT +I      G++ +A +VF  +    I+     Y IL  GF       E  
Sbjct: 430 LTPDKIHYTCLISGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVF 489

Query: 263 SLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGAN----EFLREMLPDKRIKNVRYYEDG 317
            LL+ M D G  P      +A+     +GF +G N    E L  ++ +K I ++      
Sbjct: 490 DLLDRMADQGLEPNSLTYGIAI-----VGFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSS 544

Query: 318 SDDDEDENDDNNSGVRIAYGVQLKPWLDPKAL--------ANTLDEWS-PEVVSLLADAK 368
                           +  G  L  W D   +         N +D +S  ++++ L    
Sbjct: 545 ----------------MVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVG 588

Query: 369 FVWTTRLVCKV-LRHFKSPETAWH-----FFC----------WV--AYQPGYTHDVYALE 410
            V     VCK+ L H   P+   +      +C          W     Q G + DV    
Sbjct: 589 NVQGASNVCKIMLEHDVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQRGLSVDVIVYT 648

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY----------GISKKADA- 459
            ++    + G ++   +L  ++ + G++       +++D +          GI+K+  + 
Sbjct: 649 ILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSF 708

Query: 460 ALKAFHDDRTLCGPISKFKLMLL------YSSLLRTLTKCKRDF--DAINVLEEMIFSGI 511
            L+A H+       +S  K M +      Y+ L+    KCK ++  +A  + +EM+  G+
Sbjct: 709 LLRANHNKL-----LSSMKDMQIEPDVPCYTVLID--GKCKAEYLVEARELFDEMLQKGL 761

Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
            PD   ++ L+  +  QG+    + L   +   G+EPD   F VL Q+
Sbjct: 762 TPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIEPDELTFSVLNQS 809



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 28/194 (14%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           +++  L+  Y  +GD++     +++  QR   +    Y I+M+ Y K G+  EA + F Q
Sbjct: 610 ISYSKLISIYCQNGDMDKAHLWFHDMVQRGLSVDVIVYTILMNGYCKAGRLQEACQLFVQ 669

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALE---------------------VFSALPLM 236
           + + G  P+   YTV+++     G L   L+                     + S++  M
Sbjct: 670 MTNLGIKPDVIAYTVLLD-----GHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDM 724

Query: 237 RIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGA 295
           +I+     Y +L++G    E   EA+ L +EM   G  P      AL       G I  A
Sbjct: 725 QIEPDVPCYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKA 784

Query: 296 NEFLREMLPDKRIK 309
            + L+EM+ DK I+
Sbjct: 785 EDLLQEMI-DKGIE 797



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 100/521 (19%), Positives = 200/521 (38%), Gaps = 99/521 (19%)

Query: 77  RSAP-NADSALSIMEALKSNP-------------NFSHNQSTLHALATVLAKSQRNHELK 122
           RS P  +DS +  +  LK  P              F+H+ ST   +  +L+ S++   L 
Sbjct: 60  RSRPLCSDSVVQTLHCLKRRPAIAFAYFKDTQSIGFNHDFSTYSEMIQILSHSRQGKMLV 119

Query: 123 TLIGDISSSKFLN------------------VSVNFM--NLMQWYSTSGDLELVLSTWNE 162
           +L  ++ SS   +                   S++FM   L++   T  D++  +  ++ 
Sbjct: 120 SLFSELVSSSNASGPEILPLVDHHRRTCATPCSLSFMVDCLIKACITCYDVQATICLFSG 179

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
             +   + S  ++N+++   A+TG+    +  + ++      P+  T+ ++   L    K
Sbjct: 180 ICRLGVVPSVWTWNLLLKFIAETGEYEMVLAAYNEMKCFQLTPDVYTFAIVTRSLFQAKK 239

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA 282
           +D AL+V++ +  M +K  ++ Y   + G     ++D A  +L E+  + K P  AM   
Sbjct: 240 VDEALQVWAEMTEMGVKPDARGYSSFLIGLCDCGKYDLAYVILQEINRE-KVPVEAMAY- 297

Query: 283 LERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKP 342
                              M+ D   K +R        DE E                  
Sbjct: 298 ------------------NMVMDGLCKEMRL-------DEAE------------------ 314

Query: 343 WLDPKALANTLDEWS-PEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPG 401
               K L N   + S P+V        + +  R  CK+     + +   H+   V++  G
Sbjct: 315 ----KLLENKARQGSNPDVYG------YSYLIRSYCKMGNLINAVD---HYEAMVSH--G 359

Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL 461
              + + +  +L    + G          K +  G+ L      + +D Y  +   + A+
Sbjct: 360 IETNCHIVSYLLQCFRKLGMTSEAIAYFLKFKDSGLHLDKVIYNIAMDTYCKNGNMNEAV 419

Query: 462 KAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL 521
           K  ++ +   G ++  K+   Y+ L+          +A  V EEM+ + I PD+ T++ L
Sbjct: 420 KLLNEMKY--GGLTPDKIH--YTCLISGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNIL 475

Query: 522 MYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
              F   G    V  L   +   G+EP++  + + I  +C+
Sbjct: 476 ASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCR 516



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 30/219 (13%)

Query: 401 GYTHDVYALEKMLTILARHGH-VELVDRLIAKLRSDGMRLPFSTIRLIIDFY---GISKK 456
           G   DVY    ++    + G+ +  VD   A + S G+      +  ++  +   G++ +
Sbjct: 324 GSNPDVYGYSYLIRSYCKMGNLINAVDHYEA-MVSHGIETNCHIVSYLLQCFRKLGMTSE 382

Query: 457 ADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
           A A    F D        S   L  ++Y+  + T  K     +A+ +L EM + G+ PD 
Sbjct: 383 AIAYFLKFKD--------SGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKYGGLTPDK 434

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------ 563
             ++ L+  + L+G+ +  Q++F  + +  +EPD   + +L   +CK             
Sbjct: 435 IHYTCLISGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDR 494

Query: 564 LSNSNLMPDAATKELLKKSLWKEGRRKEAA----AVEER 598
           +++  L P++ T  +      + G   EA      VEE+
Sbjct: 495 MADQGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEK 533



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 83/209 (39%), Gaps = 2/209 (0%)

Query: 107 ALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR 166
           A+ T       N  +K L+ ++         +++  L+  Y   G+++     + E  + 
Sbjct: 405 AMDTYCKNGNMNEAVK-LLNEMKYGGLTPDKIHYTCLISGYCLKGEMQNAQQVFEEMLKA 463

Query: 167 AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
                  +YNI+ S + K+G   E  +   ++ D+G  PNS TY + I      G L  A
Sbjct: 464 NIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNLSEA 523

Query: 227 LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALER 285
             +F+ +    I      Y  +V G++     D A  L   +   G      +    +  
Sbjct: 524 EVLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLIND 583

Query: 286 MQEMGFIQGANEFLREMLPDKRIKNVRYY 314
           +  +G +QGA+   + ML    + +V  Y
Sbjct: 584 LCRVGNVQGASNVCKIMLEHDVVPDVISY 612



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 14/129 (10%)

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           S L+  L +      A NV + M+   +VPDV ++S L+  +   GD       F  + Q
Sbjct: 578 SKLINDLCRVGNVQGASNVCKIMLEHDVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQ 637

Query: 544 NGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRK- 590
            G+  D  ++ +L+  YCK             ++N  + PD     +L     KE  ++ 
Sbjct: 638 RGLSVDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQG 697

Query: 591 -EAAAVEER 598
            E  A E R
Sbjct: 698 WEGIAKERR 706


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 93/456 (20%), Positives = 171/456 (37%), Gaps = 86/456 (18%)

Query: 174 SYNIVMSVYAKTGKNFEAV-ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           ++N ++    + G  FE V E   Q+ + G  P+ R Y  +I+ +   G L+ A E+ + 
Sbjct: 253 TFNTLIGYLCRNGL-FERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNR 311

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM-RDDGKFPGRAMRVALERMQEMGF 291
           +P   +K     Y  +++G    ER+ EA+ LL+EM + D         + ++   + G 
Sbjct: 312 MPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGL 371

Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALAN 351
           +    E L +ML    + +V  Y    +    E         I   V L      K++++
Sbjct: 372 VDRVIELLEQMLSHGCMPDVITYTTVINGFCKEG-------LIDEAVMLL-----KSMSS 419

Query: 352 TLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEK 411
                 P  VS      +    + +C   R   + E           Q G   +      
Sbjct: 420 C--GCKPNTVS------YTIVLKGLCSAGRWVDAEELMSQMI-----QQGCPPNPVTFNT 466

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           ++  L + G VE    L+ ++  +G      +   +ID  G + K + AL+         
Sbjct: 467 LINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALE--------- 517

Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
                                         +L  M+  GI P+   +S +    + +G  
Sbjct: 518 ------------------------------LLNVMVNKGISPNTIIYSSIACALSREGRV 547

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELL 579
             V ++F  ++   +  DA ++  +I + CK            Y+ ++  MP+ +T  +L
Sbjct: 548 NKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTML 607

Query: 580 KKSLWKEGRRKEAAA-VEERCEKINDVPSLALRGHI 614
            K L  EG  KEA   + E C +       ALR H+
Sbjct: 608 IKGLASEGLAKEAQELLSELCSR------GALRKHL 637



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 69/144 (47%), Gaps = 1/144 (0%)

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           +E  Q+   L   ++NI++  + + G     +E   Q++  G +P+  TYT +I      
Sbjct: 345 SEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKE 404

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AM 279
           G +D A+ +  ++     K  +  Y I+++G     R+ +A+ L+++M   G  P     
Sbjct: 405 GLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTF 464

Query: 280 RVALERMQEMGFIQGANEFLREML 303
              +  + + G ++ A E L++ML
Sbjct: 465 NTLINFLCKKGLVEQAIELLKQML 488



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 49/105 (46%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           +T SY IV+      G+  +A E   Q+I +G  PN  T+  +I  L   G ++ A+E+ 
Sbjct: 425 NTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELL 484

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             + +         Y  +++G     + +EA  LLN M + G  P
Sbjct: 485 KQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISP 529



 Score = 46.6 bits (109), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+++L+ L   KR  D   +++EM+     P++ TF+ L+ +    G  + V ++ + + 
Sbjct: 219 YNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMS 278

Query: 543 QNGVEPDAYMFKVLIQAYCK--YLSNSN----------LMPDAATKELLKKSLWKEGRRK 590
           ++G  PD  M+  +I   CK  +L  +N          L P+      + K L    R K
Sbjct: 279 EHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWK 338

Query: 591 EA 592
           EA
Sbjct: 339 EA 340



 Score = 43.5 bits (101), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 79/434 (18%), Positives = 157/434 (36%), Gaps = 84/434 (19%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN +++ Y + G+   A      V      PN+ T+  ++  L   G++  ALEV   +
Sbjct: 81  AYNAMVAGYCRAGQLAAARRLAAAV---PVPPNAYTFFPVVRGLCTRGRIADALEVLDEM 137

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFI 292
                      Y +++E       F  +  +L  M   G         + L  + E G +
Sbjct: 138 SFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCV 197

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
             A   LR+         + ++  G + D    +    G+ +A     K W D + L + 
Sbjct: 198 DEAVGLLRK---------LAFF--GCEADIVSYNAVLKGLCMA-----KRWGDVEELMDE 241

Query: 353 LD--EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
           +   + +P +V+      ++    L  +V  H    + + H         G T D+    
Sbjct: 242 MVRVDCAPNIVTFNTLIGYLCRNGLFERV--HEVLAQMSEH---------GCTPDIRMYA 290

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470
            ++  + + GH+E+ + ++ ++ S G++                               +
Sbjct: 291 TIIDGICKEGHLEVANEILNRMPSYGLK----------------------------PNVV 322

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
           C           Y+++L+ L   +R  +A  +L EM       D  TF+ L+  F   G 
Sbjct: 323 C-----------YNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGL 371

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKEL 578
              V +L   +  +G  PD   +  +I  +C            K +S+    P+  +  +
Sbjct: 372 VDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTI 431

Query: 579 LKKSLWKEGRRKEA 592
           + K L   GR  +A
Sbjct: 432 VLKGLCSAGRWVDA 445



 Score = 42.7 bits (99), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 39/194 (20%), Positives = 81/194 (41%), Gaps = 4/194 (2%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           A+  L+ M +    PN     + L  L +    ++R  E + L+ ++         V F 
Sbjct: 305 ANEILNRMPSYGLKPNVVCYNTVLKGLCS----AERWKEAEELLSEMFQKDCPLDDVTFN 360

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            L+ ++  +G ++ V+    +      +    +Y  V++ + K G   EAV   + +   
Sbjct: 361 ILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSC 420

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G  PN+ +YT++++ L + G+   A E+ S +           +  L+         ++A
Sbjct: 421 GCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQA 480

Query: 262 KSLLNEMRDDGKFP 275
             LL +M  +G  P
Sbjct: 481 IELLKQMLVNGCSP 494



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 66/166 (39%), Gaps = 1/166 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F  L+ +    G +E  +    +           SY+ V+    K GK  EA+E    
Sbjct: 462 VTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNV 521

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++++G  PN+  Y+ +   L   G+++  +++F  +    I+  +  Y  ++        
Sbjct: 522 MVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWE 581

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREM 302
            D A      M  +G  P  +    L + +   G  + A E L E+
Sbjct: 582 TDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 101/466 (21%), Positives = 162/466 (34%), Gaps = 117/466 (25%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  Y+  G ++     + E        S  +YN +++ + K  K  EA+E F+ + ++G
Sbjct: 49  LIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKG 108

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALE-VFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
             P+  TY+ +I  L   GK+  ALE +F  +        +  Y  L+ G    E  + A
Sbjct: 109 FEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERA 168

Query: 262 KSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDD 320
             LL EM   G  P        L  +  MG +  A +F   M P +              
Sbjct: 169 YKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSM-PSRG------------- 214

Query: 321 DEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSL--LADAKFVWTTRLVCK 378
                                              +SP+VV+   L DA +         
Sbjct: 215 -----------------------------------YSPDVVAYNGLLDALY--------- 230

Query: 379 VLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR 438
             +  K+ E    F   +A   GY  D      +L  LAR  +++  + +  K+ + G  
Sbjct: 231 --KEGKTDEAMKLFKDVIA--KGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCA 286

Query: 439 LPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD 498
              +T  +++  +  +KK D                                       D
Sbjct: 287 PNGATYSIVLSGHCRAKKVD---------------------------------------D 307

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A  VLEEM   G VPDV T++ L+             +LFS +  NG  PD   + V++ 
Sbjct: 308 AHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLN 367

Query: 559 AYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
             CK             +    L+PD  T  +L   L K G+  EA
Sbjct: 368 GLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEA 413



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 87/206 (42%), Gaps = 1/206 (0%)

Query: 99  SHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLS 158
           S N    +AL   L K +       L+ +++S  ++  ++ +  ++      G +     
Sbjct: 146 SANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQ 205

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
            ++    R       +YN ++    K GK  EA++ F+ VI +G +P++ TY  ++  L 
Sbjct: 206 FFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLA 265

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA 278
               +D A E+F  +           Y I++ G    ++ D+A  +L EM   G  P   
Sbjct: 266 RKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVV 325

Query: 279 M-RVALERMQEMGFIQGANEFLREML 303
              + L+ + +   +  A+E    M+
Sbjct: 326 TYNILLDGLCKTNLVDKAHELFSTMV 351



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 84/202 (41%), Gaps = 1/202 (0%)

Query: 74  HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKF 133
           + L    N + A  ++E + S   +  +  T + + + L +  +  E K     + S  +
Sbjct: 157 NGLCKDENIERAYKLLEEMASK-GYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGY 215

Query: 134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE 193
               V +  L+      G  +  +  + +   +  +  T +YN ++   A+     EA E
Sbjct: 216 SPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEE 275

Query: 194 TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
            F++++  G  PN  TY++++       K+D A +V   +  +        Y IL++G  
Sbjct: 276 MFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLC 335

Query: 254 GVERFDEAKSLLNEMRDDGKFP 275
                D+A  L + M D+G  P
Sbjct: 336 KTNLVDKAHELFSTMVDNGCAP 357



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 51/102 (50%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YNI++    KT    +A E F  ++D G  P+  +Y+V++  L    K+  A  +F  +
Sbjct: 326 TYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRM 385

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              ++      + IL++G     + DEAK LL++M   G  P
Sbjct: 386 IERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAP 427



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 12/119 (10%)

Query: 486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
           +L++  K  +  D   + E+M+ +GI PD   ++ L+  +A +G      +L+  +   G
Sbjct: 14  VLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVG 73

Query: 546 VEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           +EP  Y +  L+ A+C            K ++     PD  T   +   L K G+  EA
Sbjct: 74  LEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEA 132



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+    K  R  +A  + EEM+  G+ P + T++ L+  F  +   K   +LF  + 
Sbjct: 46  YNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMA 105

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
           + G EPD   +  +I   CK
Sbjct: 106 EKGFEPDVVTYSTIISGLCK 125



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 47/99 (47%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SY++V++   KT K  +A   F ++I+   +P+  T+ ++++ L   GKLD A ++   +
Sbjct: 361 SYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQM 420

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
                      Y  L+ G     R  +A  L   M++ G
Sbjct: 421 TCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKG 459


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 110/591 (18%), Positives = 226/591 (38%), Gaps = 54/591 (9%)

Query: 58  LSSLLNDRLLDP-----FIVTHALRSAPNADSALSIMEALKSNPN--FSHNQSTLHALAT 110
           L+ L+ D++L P      ++  A R+          +  + S+ +  F     + + L  
Sbjct: 111 LNRLVKDKILAPADHVRILMIKACRNEDELKRVTDFLHGISSSDSGLFGFTLYSFNTLLL 170

Query: 111 VLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLL 170
            L K       + +   I SS      + F  ++      G ++  +  +N+  Q     
Sbjct: 171 QLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCP 230

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
              +Y  ++  + +  K  +A E F +++ +G  PNS TY+ +I  L N G++  A+++ 
Sbjct: 231 DAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDML 290

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA-LERMQEM 289
             +    I+ T   Y + +     + R D+A +L+  M   G  P      A +  +   
Sbjct: 291 EEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRA 350

Query: 290 GFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKA- 348
           G ++ A     +ML +  + N   Y    ++   E        R    +++  W++    
Sbjct: 351 GKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEG-------RFGIALKIFDWMEGHGT 403

Query: 349 LANT------------LDEWSPEVV---SLLADAK----FVWTTRLVCKVLRHFKSPETA 389
           LAN             +D+    +V    +L D        + T +V  + R + +  T 
Sbjct: 404 LANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATR 463

Query: 390 WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID 449
              F ++  +     D     ++++   + G ++       ++   G+     T   +ID
Sbjct: 464 ---FLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMID 520

Query: 450 FYGISKKADAALKAFH--DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMI 507
            Y    K D AL  F   ++      I        Y++++  L+K  R  +A     +M 
Sbjct: 521 GYCKEGKIDVALSLFERMEENGCSASIET------YNAIISGLSKGNRFSEAEKFCAKMT 574

Query: 508 FSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK----- 562
             G+ P+  T++ L+          +  K+F  + +    P+A+ +  LI   C+     
Sbjct: 575 EQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVD 634

Query: 563 ---YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLAL 610
               L+ +   P   T   L   L +EGR  EA+ + E  ++    PS+ +
Sbjct: 635 AAERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEI 685



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/405 (19%), Positives = 164/405 (40%), Gaps = 54/405 (13%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           S ++Y  ++S   + GK   A+  + +++ EG +PN+ TY  +I  L   G+   AL++F
Sbjct: 336 SVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIF 395

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM--RVALERMQE 288
             +        ++ Y  +++G  G++  ++A  + N+M  DG  P       + +E ++ 
Sbjct: 396 DWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKR 455

Query: 289 MGFIQGANEFLREML-----PDKRIKNVRYYEDGSDDDEDENDDNNSGV---RIAYGVQL 340
            G++  A  FL  M      PD+R     Y E  S   +    D+ +      +  G+  
Sbjct: 456 -GYLNNATRFLYMMKESNCEPDERT----YCELISGFCKGGKLDSATSFFYEMLKCGISP 510

Query: 341 KPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQP 400
             W     +     E   +V                   L  F+  E           + 
Sbjct: 511 NQWTYTAMIDGYCKEGKIDV------------------ALSLFERME-----------EN 541

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G +  +     +++ L++       ++  AK+   G++    T   +I+    +   + A
Sbjct: 542 GCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLA 601

Query: 461 LKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
            K FH+ ++  C P +       Y+SL+  L  C+     ++  E +  +G  P + T+S
Sbjct: 602 FKIFHEMEKKNCLPNAH-----TYTSLIYGL--CQE--GKVDAAERLTENGCEPTIDTYS 652

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYL 564
            L+     +G      +L   +++ G+ P   ++  L+ A+CK L
Sbjct: 653 TLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSL 697



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 105/246 (42%), Gaps = 43/246 (17%)

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT------ILARHGHVELVDRLI 429
           V K++    + +TA  FF W++ +  Y HD+     ML       ILA   HV ++  +I
Sbjct: 74  VSKIINTHINTDTALQFFYWISKRHFYKHDMGCFVSMLNRLVKDKILAPADHVRIL--MI 131

Query: 430 AKLRSDGMRLPFSTIRLIIDF-YGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLR 488
              R++        ++ + DF +GIS  +D+ L  F               +  +++LL 
Sbjct: 132 KACRNE------DELKRVTDFLHGISS-SDSGLFGF--------------TLYSFNTLLL 170

Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548
            L K      A NV  ++  SG+ P + TF+ ++     +G  +    +F+ + Q  + P
Sbjct: 171 QLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCP 230

Query: 549 DAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAA-AV 595
           DA+ +  LI  +C+             +      P++ T   L   L  EGR  EA   +
Sbjct: 231 DAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDML 290

Query: 596 EERCEK 601
           EE  EK
Sbjct: 291 EEMTEK 296



 Score = 40.4 bits (93), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 40/218 (18%), Positives = 92/218 (42%), Gaps = 34/218 (15%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D ALS+ E ++ N   S +  T +A+ + L+K  R  E +     ++       ++ + +
Sbjct: 529 DVALSLFERMEEN-GCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTS 587

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLL-------------------------------S 171
           L+     +    L    ++E  ++  L                                +
Sbjct: 588 LINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAERLTENGCEPT 647

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY-TVMIEHLVNLGKLDSALEVF 230
            ++Y+ ++S   + G++ EA +    + ++G  P+   Y ++++ H  +L K+D ALE+F
Sbjct: 648 IDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSL-KVDCALEIF 706

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           + + +   +     Y +L+    GV R +EA ++   +
Sbjct: 707 NLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSL 744


>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Cucumis sativus]
          Length = 637

 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 103/511 (20%), Positives = 196/511 (38%), Gaps = 42/511 (8%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
           +F H+ +T  AL   L +S    E+   I D+  S        +  +++    +  +   
Sbjct: 119 HFQHDSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKA 178

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI-PNSRTYTVMIE 215
           LS + + + R    +   YN ++ +    G + +  E + ++  EG   P++ TY+ +I 
Sbjct: 179 LSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALIS 238

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               L + D A  +F  +    +  T K Y  ++  +  + + + A  L+ EM+  G  P
Sbjct: 239 AFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAP 298

Query: 276 GRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRI 334
                  L + + ++G +  A      ML D    +V                NN    +
Sbjct: 299 TVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLI-------------NNLINIL 345

Query: 335 AYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFC 394
               +L+  L      ++L + +P VV          T   V K +   K+P +    + 
Sbjct: 346 GRAGRLEDALKLFGKMDSL-QCAPNVV----------TYNTVIKAIFESKAPASEAALWF 394

Query: 395 WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS 454
                 G     +    ++    +   VE    L+ ++   G     +    +ID  G +
Sbjct: 395 EKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRA 454

Query: 455 KKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
           K+ +AA + F + +  CG  S      +Y+ +++    C R  DA+++  EM   G  PD
Sbjct: 455 KRYEAANELFQELKENCGRSSA----RVYAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPD 510

Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY----------- 563
           V T++ LM      G       L   +R+NG  PD     +++    K            
Sbjct: 511 VYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFT 570

Query: 564 -LSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
            +  S +MPDA +   +   L + G  + AA
Sbjct: 571 KMKESEIMPDAVSYNTILSCLSRAGMFEMAA 601



 Score = 40.0 bits (92), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 92/256 (35%), Gaps = 27/256 (10%)

Query: 355 EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT 414
           +W  +    +   K     RLV +VL           FF W   +  + HD      ++ 
Sbjct: 73  KWGSDAEKAIEVLKLKVDHRLVHQVLDIDVEIRAKIQFFKWAGKRQHFQHDSTTYMALIR 132

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRL----IIDFYGISKKADAALKAFHDDRTL 470
            L   G V+ + R I     D +R P S        I+   G +K  + AL  F+  +  
Sbjct: 133 CLEESGLVDEMWRTI----QDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVFYQIKGR 188

Query: 471 -CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSG-IVPDVQTFSGLMYHFALQ 528
            C P +      +Y++L+  L           +  E+   G   PD  T+S L+  F   
Sbjct: 189 KCNPTAT-----VYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAFGKL 243

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATK 576
                  +LF  +++NG+ P   ++  ++  Y K             +      P   T 
Sbjct: 244 ERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTY 303

Query: 577 ELLKKSLWKEGRRKEA 592
             L K L K GR  +A
Sbjct: 304 TELIKGLGKVGRVDDA 319


>gi|297811615|ref|XP_002873691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319528|gb|EFH49950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 938

 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 117/577 (20%), Positives = 216/577 (37%), Gaps = 87/577 (15%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
            F  +  T  ++   L K  +  E   L+ ++         V +  L+     + D    
Sbjct: 254 GFDPDVVTFSSIINRLCKDGKVMEGGLLLREMEEMGVYPNHVTYTTLVDSLFKAKDYRHA 313

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           L+ +++   R   +    Y ++M+   K G   EA +TF+ ++++  +PN  TYT +++ 
Sbjct: 314 LALYSQMVVRGIPVDLVVYTVLMAGLFKAGDLREAEKTFKMLLEDNEVPNVVTYTALVDG 373

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD------ 270
           L   G L SA  + + +    +      Y  ++ G+V     +EA SL+ +M D      
Sbjct: 374 LCKAGDLSSAEFIITQMLEKSVFPNVVTYSSMINGYVKKGMLEEAVSLMRKMEDQNVVPN 433

Query: 271 --------DGKFPGRAMRVALERMQEMGFIQ-GANEFLREMLPD--KRIKNVRYYEDGSD 319
                   DG F      VA E  +EM  I    N ++ + L +  KRI  ++  +    
Sbjct: 434 GFTYGTVIDGLFKAGKQEVASEMSKEMRLIGVEENNYILDALVNHLKRIGRIKEVKGLVK 493

Query: 320 DDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSL-----LADAKFVW--- 371
           D             ++ GV L   ++  +L +   +   E  +L     + + +  W   
Sbjct: 494 D------------MVSKGVTLDH-INYTSLIDVFFKGGDEEAALSWAEEMQEKEMPWDVV 540

Query: 372 TTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAK 431
           +  ++   L  F      W +      + G   D+     M+    + G  E + +L  K
Sbjct: 541 SYNVLISGLLKFGKVGADWAY--KGMREKGIEPDIATFNIMMNSQRKQGDFEGILKLWDK 598

Query: 432 LRSDGMRLPFSTIRLIID--------------------------------FYGISKKADA 459
           ++S G++       +++                                 F  +S K   
Sbjct: 599 MKSCGIKPSLMICNIVVGMLCEKGKMKEAIDILDQMMFMEIHPNLTTYRIFLDMSSKHKR 658

Query: 460 ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           A   F    TL     K     +Y++L+ TL K      A  V+E+M   G VPD  TF+
Sbjct: 659 ADAIFKTHETLLSYGIKLSRQ-VYNTLIATLCKLGMTRKAAMVMEDMEARGFVPDTVTFN 717

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC---------KYLS---NS 567
            LM+ + +          +SM+ + G+ P+   +  +I+            K+LS   + 
Sbjct: 718 ALMHGYFVGSHVGKALSTYSMMMEAGISPNVATYNTIIRGLSDAGLIKEVEKWLSEMKSR 777

Query: 568 NLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND 604
            + PD  T   L     K G +KE+  +   CE I D
Sbjct: 778 GMRPDDFTYNALISGQAKIGNKKESMTI--YCEMIAD 812



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 19/158 (12%)

Query: 462 KAFHDDRTLCGPISKFKLML-LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           + FH D  L    +K ++ + L+ +L R    C R + A   L  M   G+VPD+  ++ 
Sbjct: 43  RIFHPDLAL----NKTRVYVSLFHTLFRLYLSCGRLYGAARTLSAMCTFGVVPDLCLWNS 98

Query: 521 LMYHFALQG---DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY---------LSNSN 568
           L++ F + G   D+  V  ++S +   GV PD +   VLI + CK          L N  
Sbjct: 99  LIHQFNVNGLVHDQ--VSLVYSKMIACGVSPDVFALNVLIHSLCKVGQLSFAISLLRNRV 156

Query: 569 LMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
           +  D  T   +   L + G   EA        KI  +P
Sbjct: 157 ISVDTVTYNTVISGLCEHGLADEAYQFLSEMVKIGILP 194



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 13/149 (8%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  +++  S +G ++ V    +E + R       +YN ++S  AK G   E++  + ++I
Sbjct: 751 YNTIIRGLSDAGLIKEVEKWLSEMKSRGMRPDDFTYNALISGQAKIGNKKESMTIYCEMI 810

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG----- 254
            +G +P + TY V+I     +GK+  A E+   +   R+   +  Y  ++ G        
Sbjct: 811 ADGLVPKTSTYNVLISEFAKVGKMLQATELMKEMGKRRVSPNTSTYCTMISGLCKLCTHP 870

Query: 255 -VE------RFDEAKSLLNEM-RDDGKFP 275
            VE         EAK LL EM  + G  P
Sbjct: 871 EVEWNKKAMYLAEAKGLLKEMIEEKGYIP 899



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 12/137 (8%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++L+ +L K K    A+ +  +M+  GI  D+  ++ LM      GD +  +K F M+ 
Sbjct: 297 YTTLVDSLFKAKDYRHALALYSQMVVRGIPVDLVVYTVLMAGLFKAGDLREAEKTFKMLL 356

Query: 543 QNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRK 590
           ++   P+   +  L+   CK             +   ++ P+  T   +     K+G  +
Sbjct: 357 EDNEVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVFPNVVTYSSMINGYVKKGMLE 416

Query: 591 EAAAVEERCEKINDVPS 607
           EA ++  + E  N VP+
Sbjct: 417 EAVSLMRKMEDQNVVPN 433



 Score = 39.7 bits (91), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 36/187 (19%), Positives = 74/187 (39%), Gaps = 1/187 (0%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           AD+     E L S      ++   + L   L K     +   ++ D+ +  F+  +V F 
Sbjct: 659 ADAIFKTHETLLSY-GIKLSRQVYNTLIATLCKLGMTRKAAMVMEDMEARGFVPDTVTFN 717

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            LM  Y     +   LST++   +     +  +YN ++   +  G   E  +   ++   
Sbjct: 718 ALMHGYFVGSHVGKALSTYSMMMEAGISPNVATYNTIIRGLSDAGLIKEVEKWLSEMKSR 777

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G  P+  TY  +I     +G    ++ ++  +    +   +  Y +L+  F  V +  +A
Sbjct: 778 GMRPDDFTYNALISGQAKIGNKKESMTIYCEMIADGLVPKTSTYNVLISEFAKVGKMLQA 837

Query: 262 KSLLNEM 268
             L+ EM
Sbjct: 838 TELMKEM 844



 Score = 39.7 bits (91), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 6/111 (5%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++L+    K     +++ +  EMI  G+VP   T++ L+  FA  G      +L   + 
Sbjct: 786 YNALISGQAKIGNKKESMTIYCEMIADGLVPKTSTYNVLISEFAKVGKMLQATELMKEMG 845

Query: 543 QNGVEPDAYMFKVLIQAYCKYLS------NSNLMPDAATKELLKKSLWKEG 587
           +  V P+   +  +I   CK  +      N   M  A  K LLK+ + ++G
Sbjct: 846 KRRVSPNTSTYCTMISGLCKLCTHPEVEWNKKAMYLAEAKGLLKEMIEEKG 896



 Score = 38.9 bits (89), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 1/138 (0%)

Query: 166 RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
           R  +  T ++N +M  Y       +A+ T+  +++ G  PN  TY  +I  L + G +  
Sbjct: 707 RGFVPDTVTFNALMHGYFVGSHVGKALSTYSMMMEAGISPNVATYNTIIRGLSDAGLIKE 766

Query: 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALE 284
             +  S +    ++     Y  L+ G   +    E+ ++  EM  DG  P  +   V + 
Sbjct: 767 VEKWLSEMKSRGMRPDDFTYNALISGQAKIGNKKESMTIYCEMIADGLVPKTSTYNVLIS 826

Query: 285 RMQEMGFIQGANEFLREM 302
              ++G +  A E ++EM
Sbjct: 827 EFAKVGKMLQATELMKEM 844


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 111/503 (22%), Positives = 194/503 (38%), Gaps = 68/503 (13%)

Query: 79  APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDIS---SSKFL- 134
           A N     +I+  L     ++  +  +  L   L  S+R+    ++   +S   SSKF  
Sbjct: 67  AKNPQLYSAIIHVLTGAKLYAKARCLMRDLIQCLQNSRRSRICCSVFNVLSRLESSKFTP 126

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
           NV   F  L+  +S  G +E  L  W  Y+    L + ++ N+V+    K G+     + 
Sbjct: 127 NV---FGVLIIAFSEMGLVEEAL--WVYYKMDV-LPAMQACNMVLDGLVKKGRFDTMWKV 180

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
           +  ++  GA PN  TY  +I+     G    A  +F  +   +I  T   Y IL+ G  G
Sbjct: 181 YGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCG 240

Query: 255 VERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRY 313
             R  EA+S+   MR+ G  P        ++   ++  ++ A E  +EML D  + NV  
Sbjct: 241 ESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVT 300

Query: 314 YE---DG-SDDDEDEN------DDNNSGVR---IAYGVQLKPWLDPKALANTLDEWSP-E 359
           +    DG    DE  +      D  + GV      Y   +  +     L+  L   S  E
Sbjct: 301 FGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIE 360

Query: 360 VVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH 419
              +L D   V+T  ++ K L      E A         + G+  +      ++    + 
Sbjct: 361 KHEILPD---VFTYSILIKGLCGVDRMEEADGLL-QEMKKKGFLPNAVTYNTLIDGYCKE 416

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL 479
           G++E    + +++   G+     T   +ID Y  + K +AA                   
Sbjct: 417 GNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAA------------------- 457

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           M LY+                    EM+  G++PDV  ++ L+      G+ K   +L  
Sbjct: 458 MGLYT--------------------EMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHK 497

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK 562
            +++ G+ P+ +    LI   CK
Sbjct: 498 EMQEAGLHPNVFTLSCLIDGLCK 520



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 97/451 (21%), Positives = 171/451 (37%), Gaps = 54/451 (11%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L    R  E +++   + +S  L     +  +M  Y     ++  L  + E      L +
Sbjct: 238 LCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPN 297

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
             ++ I++    KT +   A +    +   G +PN   Y  +I+     G L  AL + S
Sbjct: 298 VVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHS 357

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMG 290
            +    I      Y IL++G  GV+R +EA  LL EM+  G  P        ++   + G
Sbjct: 358 EIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEG 417

Query: 291 FIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALA 350
            ++ A E   +M       N+                      I +   +  +     + 
Sbjct: 418 NMEKAIEVCSQMTEKGIEPNI----------------------ITFSTLIDGYCKAGKME 455

Query: 351 NTLDEWSPEVV-SLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYAL 409
             +  ++  V+  LL D   V  T L+     HFK                G T + + L
Sbjct: 456 AAMGLYTEMVIKGLLPDV--VAYTALI---DGHFKD---------------GNTKEAFRL 495

Query: 410 EKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRT 469
            K +     H +V  +  LI  L  DG R+    I+L +   G         K    DR+
Sbjct: 496 HKEMQEAGLHPNVFTLSCLIDGLCKDG-RIS-DAIKLFLAKTGTDTTGS---KTNELDRS 550

Query: 470 LCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
           LC P       ++Y++L++ L    R F A     +M  SG+ PDV T   ++       
Sbjct: 551 LCSPNH-----VMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAM 605

Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
             + V  L + + + G+ P++ +++VL + Y
Sbjct: 606 HLRDVMMLQADILKMGIIPNSSVYRVLAKGY 636



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS L++ L    R  +A  +L+EM   G +P+  T++ L+  +  +G+ +   ++ S + 
Sbjct: 371 YSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMT 430

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
           + G+EP+   F  LI  YCK             +    L+PD      L    +K+G  K
Sbjct: 431 EKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTK 490

Query: 591 EA 592
           EA
Sbjct: 491 EA 492



 Score = 46.2 bits (108), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 97/228 (42%), Gaps = 20/228 (8%)

Query: 395 WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS 454
           WV Y+      + A   +L  L + G  + + ++   + + G      T   +ID  G  
Sbjct: 147 WVYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLID--GCC 204

Query: 455 KKADAALKAFHDDRTLCGPISK--FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV 512
           ++ D  LKAF   R     I K  F  +++Y+ L+R L    R  +A ++   M  SG++
Sbjct: 205 RQGDF-LKAF---RLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGML 260

Query: 513 PDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY--------- 563
           P++ T++ +M  +      K   +L+  +  +G+ P+   F +LI   CK          
Sbjct: 261 PNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKF 320

Query: 564 ---LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
              +++  ++P+      L     K G   EA ++    EK   +P +
Sbjct: 321 LIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDV 368



 Score = 39.3 bits (90), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 14/117 (11%)

Query: 493 CKRD--FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA 550
           CK D    A   L +M   G+VP++  ++ L+  +   G+      L S + ++ + PD 
Sbjct: 309 CKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDV 368

Query: 551 YMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
           + + +LI+  C            + +     +P+A T   L     KEG  ++A  V
Sbjct: 369 FTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEV 425


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 105/517 (20%), Positives = 197/517 (38%), Gaps = 62/517 (11%)

Query: 136 VSVNFMNLM-QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
           V+   +N+M   Y  S + +   +  +E  +R       ++N+++    + G    A+  
Sbjct: 155 VNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIAL 214

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
              + ++G  P   T+  +++ L    + D A EVF A+    +    + + IL+ GF  
Sbjct: 215 VDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCR 274

Query: 255 VERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRY 313
           V   +EA     EM+  G  P   +    +      G +  A  +LREM      K +  
Sbjct: 275 VGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREM------KGLGL 328

Query: 314 YEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTT 373
             DG                + Y + +  +    +++  L     E+V L      V   
Sbjct: 329 VPDG----------------VIYTMVIGGFCRAGSMSEAL-RVRDEMVGLGCLPDVVTYN 371

Query: 374 RLV---CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIA 430
            L+   CK  R   + E           + G T D+     ++    R G+ E   +L  
Sbjct: 372 TLLNGLCKQHRLLDAEELLNEM-----KERGVTPDLCTFTTLIHGYCRDGNFEKALQLFD 426

Query: 431 KLRSDGMRLPFSTIRLIIDFYGISKKAD-AALKAFHDD---RTLCGPISKFKLMLLYSSL 486
            L    +R        +ID  G+ +K D A      DD   R +      F   + YS L
Sbjct: 427 TLLHQRLRPDVVAYNSLID--GMCRKGDLAKANELWDDMHAREI------FPNHVTYSIL 478

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           + +  +  +  +A   L+EM+  G +P++ T++ ++  +   G+ K  Q+    + Q+ +
Sbjct: 479 IDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNI 538

Query: 547 EPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAA 594
            PD   F  LI  Y K             +    + PDA T  ++     ++G  +EA  
Sbjct: 539 LPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGR 598

Query: 595 VEERCEKINDVPSL-----ALRGHIWAVSSADLTRVH 626
           V ++       P        + GH+ A +S +  ++H
Sbjct: 599 VFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLH 635



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 103/228 (45%), Gaps = 6/228 (2%)

Query: 53  NSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHA 107
           + ++++ S +  R + P +VTH     A   A + D+A+++++++ +N        T ++
Sbjct: 174 DKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSM-ANKGLKPGIVTFNS 232

Query: 108 LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA 167
           +   L K +R  + K +   +          +F  L+  +   G++E  +  + E +QR 
Sbjct: 233 VLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRG 292

Query: 168 KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227
                 S++ ++ +++  GK   A    R++   G +P+   YT++I      G +  AL
Sbjct: 293 VTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEAL 352

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            V   +  +        Y  L+ G     R  +A+ LLNEM++ G  P
Sbjct: 353 RVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTP 400



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/157 (17%), Positives = 68/157 (43%)

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
           D+ + +     V +  L+  +   G +E      +E   +  L +  +YN ++  Y ++G
Sbjct: 462 DMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSG 521

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
              +  +  ++++ +  +P+  T+  +I   +    +  A  VF+ +    ++  +  Y 
Sbjct: 522 NVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYN 581

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
           +++ GF      +EA  +  +M   G  P R   ++L
Sbjct: 582 MIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSL 618


>gi|222612685|gb|EEE50817.1| hypothetical protein OsJ_31213 [Oryza sativa Japonica Group]
          Length = 522

 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 5/171 (2%)

Query: 68  DPFIVTHALRSAPNADSALSI--MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           D   V   L++ P    A     + A +    F H++ T  ++  +L ++ R   +  L+
Sbjct: 66  DSHTVARVLKAHPPLHKAFLFFRLAAGRRAAGFRHDRFTYTSMLHLLGEAGRVPAMMRLL 125

Query: 126 GDISSSKF-LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR-AKLLST-ESYNIVMSVY 182
            ++  +            +M W + +GD+E  +  W E R R  K   T  SY   + + 
Sbjct: 126 AEMLRAGVEPPTPPPSPTVMHWLAHAGDVEAPIRVWEEMRARKGKCRPTLVSYTACVKIL 185

Query: 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
              G+  EA E F++++ EG  P+ +TYTV+IEHL N+GK ++ +E+   +
Sbjct: 186 FDAGRPAEAREVFQEMVAEGLRPSCKTYTVLIEHLANVGKFEATMEIMDKM 236



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 100/218 (45%), Gaps = 6/218 (2%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQ--PGYTHDVYALEKML 413
           WS     LL+     W +  V +VL+       A+ FF   A +   G+ HD +    ML
Sbjct: 50  WSAARPLLLSLPGLAWDSHTVARVLKAHPPLHKAFLFFRLAAGRRAAGFRHDRFTYTSML 109

Query: 414 TILARHGHVELVDRLIAKLRSDGMRLPFSTIRL-IIDFYGISKKADAALKAFHDDRTLCG 472
            +L   G V  + RL+A++   G+  P       ++ +   +   +A ++ + + R   G
Sbjct: 110 HLLGEAGRVPAMMRLLAEMLRAGVEPPTPPPSPTVMHWLAHAGDVEAPIRVWEEMRARKG 169

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
                  ++ Y++ ++ L    R  +A  V +EM+  G+ P  +T++ L+ H A  G  +
Sbjct: 170 KCRP--TLVSYTACVKILFDAGRPAEAREVFQEMVAEGLRPSCKTYTVLIEHLANVGKFE 227

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM 570
              ++   +++ GVEPD  +  +L+Q  C     +++M
Sbjct: 228 ATMEIMDKMQEAGVEPDKALCNILVQK-CSRAGETSVM 264


>gi|125562731|gb|EAZ08111.1| hypothetical protein OsI_30376 [Oryza sativa Indica Group]
          Length = 794

 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 102/513 (19%), Positives = 195/513 (38%), Gaps = 33/513 (6%)

Query: 56  NSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKS 115
           ++LS  L  R L    V+  LR + +AD A+    A         + S   AL    + +
Sbjct: 91  SALSPRLRSRPLHAHAVSLLLRLSSHADEAMFDALADARAAGLPASSSAFAALVAAHSSA 150

Query: 116 QRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
            R+ +       +   +    +  +  +++    SG + L L+ +N         +  +Y
Sbjct: 151 GRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATY 210

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           N++M    K G   +A++ F +++D G +PN + YTV++  L N GK+D A+++  ++  
Sbjct: 211 NVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKD 270

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGA 295
                    Y   + G   V R +EA   L  ++D G   G               ++G 
Sbjct: 271 KGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALG---------------LKGY 315

Query: 296 NEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDE 355
           +  +  +   +R      +++G    +   + N S   + Y + ++   +   + + L  
Sbjct: 316 SCLIDGLFQARR------FDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSF 369

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
                        F + T  V KVL      E A H       Q     D      M+  
Sbjct: 370 LDVMKKKGFVPDTFCYNT--VLKVLCDHGDLERA-HTLRSEMLQNNLVLDSTTQTIMICG 426

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
           L + G V+   ++  ++   G      T   +ID +    + + A   FH       P  
Sbjct: 427 LCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSL 486

Query: 476 KFKLMLLYSS---------LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
             +L L  +          L+  + +  +   A  +L  +I SG+VPDV T++ L+    
Sbjct: 487 FLRLTLGANQVRDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLC 546

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
              +     +LF  ++  G+ PD   +  LI  
Sbjct: 547 KARNLDGAVRLFKELQLKGISPDEITYGTLIDG 579



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 126/599 (21%), Positives = 225/599 (37%), Gaps = 111/599 (18%)

Query: 67  LDPFIVTHALRSA--PNAD-------SALSIMEALKSNPNFSHNQSTLHALATVLAKSQR 117
           L P  V+ AL  A  P A        SALS    L+S P  +H  S L  L+     S  
Sbjct: 65  LTPHAVSDALLCAAIPAASRLRLFLFSALS--PRLRSRPLHAHAVSLLLRLS-----SHA 117

Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG---DLELVLSTWNEYRQRAKLLSTES 174
           +  +   + D  ++     S  F  L+  +S++G   D     S  +E++ R    +   
Sbjct: 118 DEAMFDALADARAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRP---TAFV 174

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YN ++     +G    A+  + +++  G  PN  TY V+++ L   G    AL++F  + 
Sbjct: 175 YNTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEML 234

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQG 294
              I    K Y +L+       + DEA  LL  M+D G  P        + +    F+ G
Sbjct: 235 DRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLP--------DEVTYNAFLSG 286

Query: 295 ANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPW---LDPKALAN 351
             +  R    ++  + +   +DG                  + + LK +   +D    A 
Sbjct: 287 LCKVGRV---NEAFQRLVMLQDG-----------------GFALGLKGYSCLIDGLFQAR 326

Query: 352 TLDEW------------SPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQ 399
             DE             SP+VV        ++T  ++ +        E A  F   V  +
Sbjct: 327 RFDEGFGYYKTMLERNISPDVV--------LYT--IMIRGCAEAGRIEDALSFL-DVMKK 375

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA-- 457
            G+  D +    +L +L  HG +E    L +++  + + L  +T  ++I   G+ K+   
Sbjct: 376 KGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMI--CGLCKRGLV 433

Query: 458 DAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM---------- 506
           D A++ F +     C P      ++ Y++L+    +  R  +A  +  +M          
Sbjct: 434 DEAMQIFDEMGEHGCDPT-----VMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFL 488

Query: 507 ---IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY 563
              + +  V D ++   L++     G      KL   +  +GV PD   +  LI   CK 
Sbjct: 489 RLTLGANQVRDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKA 548

Query: 564 ------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLAL 610
                       L    + PD  T   L   L +  R  +A  + +   +    PSL++
Sbjct: 549 RNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSI 607



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 16/163 (9%)

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
           +ES   ++    ++G+  +A +  R +ID G +P+  TY  +I  L     LD A+ +F 
Sbjct: 500 SESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFK 559

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG----RAMRVALERMQ 287
            L L  I      Y  L++G +   R ++A  L   +   G  P      +M  +L RM+
Sbjct: 560 ELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMK 619

Query: 288 EMGFIQGANEFLREMLPDKR--------IKNV-RYYEDGSDDD 321
           ++   Q  N +L + LP K         + N  +  EDGS DD
Sbjct: 620 KLS--QAINLWL-DYLPKKYNFPVESEVLANAHKEIEDGSLDD 659



 Score = 45.8 bits (107), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 13/144 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++LY+ ++R   +  R  DA++ L+ M   G VPD   ++ ++      GD +    L S
Sbjct: 347 VVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRS 406

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEG 587
            + QN +  D+    ++I   CK             +      P   T   L    ++EG
Sbjct: 407 EMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREG 466

Query: 588 RRKEAAAVEERCEKINDVPSLALR 611
           R +EA  +  + E  N+ PSL LR
Sbjct: 467 RLEEARMLFHKMEMGNN-PSLFLR 489


>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 1 [Brachypodium distachyon]
 gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 2 [Brachypodium distachyon]
          Length = 704

 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 101/445 (22%), Positives = 175/445 (39%), Gaps = 56/445 (12%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI-----PNSRTYTVMIEHLVNLGKLDS 225
              S+N ++  + +  + F   + F   +  GA      PN +TY +M+  L   G LD 
Sbjct: 119 GVRSHNALLDAFVRA-RRFSDADAFFASLSHGAFGRRIAPNLQTYNIMLRSLCVRGDLDR 177

Query: 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD--------------- 270
           A+ +F +L    +      Y  L+ GFV   R D A  LL+EM                 
Sbjct: 178 AVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNALLG 237

Query: 271 ----DGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDEND 326
               +G+F  +AMRV  + +++ G     N     ++ D   K +  +++  D  E    
Sbjct: 238 GCFRNGEFE-KAMRVWEQLVRDPG--ASPNLATYNVMLDGLCK-LGMFKEAGDVWERMVA 293

Query: 327 DNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSP 386
           +N+    I YG  +        + +    +S  + + L     ++ + L  K   H    
Sbjct: 294 NNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLL--KGFCHAGRV 351

Query: 387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP----FS 442
             AW F  W +       +V +   ML  L   G V+    L   L  D    P    FS
Sbjct: 352 GEAWKF--WDSMSVSGIRNVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFS 409

Query: 443 TIRLIIDFYGISKK--ADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAI 500
           T+      +G+ +K  A+ +L+   + RT    + +F     YSS++  L K  R  DA+
Sbjct: 410 TM-----IHGLCEKGFANKSLQILEEARTSGKELDEFS----YSSMISGLCKDGRLDDAV 460

Query: 501 NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
            + E++      P+   ++ L+  F          +++S + +N   P    +  LI   
Sbjct: 461 KLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGL 520

Query: 561 C---KYLSNSNLMPDAATKELLKKS 582
           C   KYL  S       T+E+L+K 
Sbjct: 521 CKAEKYLEASRF-----TREMLEKG 540



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 95/212 (44%), Gaps = 6/212 (2%)

Query: 64  DRLLDPFIVT-----HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRN 118
           D  L P +VT     H L     A+ +L I+E  +++     ++ +  ++ + L K  R 
Sbjct: 398 DDSLSPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGK-ELDEFSYSSMISGLCKDGRL 456

Query: 119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV 178
            +   L   IS   F   S  +  L+  +  +      +  +++  +     +T +YN +
Sbjct: 457 DDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTL 516

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI 238
           +    K  K  EA    R+++++G + +  TY  +I  L    K+D AL +++ +    +
Sbjct: 517 IHGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGL 576

Query: 239 KRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
           +     + IL+ G     + DEA  LL+EM++
Sbjct: 577 QTDVVMHNILIHGLCSAGKVDEASQLLSEMKE 608



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 55/135 (40%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F  ++      G     L    E R   K L   SY+ ++S   K G+  +AV+ + +
Sbjct: 406 VTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEK 465

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +  +   PNS  Y  +I       K   A+ V+S +       T+  Y  L+ G    E+
Sbjct: 466 ISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEK 525

Query: 258 FDEAKSLLNEMRDDG 272
           + EA     EM + G
Sbjct: 526 YLEASRFTREMLEKG 540



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 105/550 (19%), Positives = 207/550 (37%), Gaps = 70/550 (12%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A+++ ++L+     + ++ T   L +   K+ R      L+ ++ S +    +V +  
Sbjct: 176 DRAVTLFDSLRCR-GLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNA 234

Query: 143 LMQWYSTSGDLELVLSTWNE-YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
           L+     +G+ E  +  W +  R      +  +YN+++    K G   EA + + +++  
Sbjct: 235 LLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMFKEAGDVWERMVAN 294

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
              P+  TY  MI  L     +DSA  V+S +    +      Y  L++GF    R  EA
Sbjct: 295 NHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEA 354

Query: 262 KSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRI------------- 308
               + M   G     +  + L+ + + G +  A +    +  D  +             
Sbjct: 355 WKFWDSMSVSGIRNVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHG 414

Query: 309 --------KNVRYYED----GSDDDEDENDDNNSGV----RIAYGVQLKPWLDPKALANT 352
                   K+++  E+    G + DE       SG+    R+   V+L   +   +    
Sbjct: 415 LCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPN 474

Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
              ++  +      +KF    R+  ++  +  SP T       + Y     H +   EK 
Sbjct: 475 SHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTT-------ITYNT-LIHGLCKAEKY 526

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD--DRTL 470
           L             R   ++   G  L  +T   +I      KK D AL  ++   D+ L
Sbjct: 527 LE----------ASRFTREMLEKGCMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGL 576

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMI-FSGIVPDVQTFSGLMYHFALQG 529
              +      ++++ L+  L    +  +A  +L EM   +   P+V T++ LM  F   G
Sbjct: 577 QTDV------VMHNILIHGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTLMDGFYETG 630

Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKE 577
                  L+  + +NG+ PD   +   I+  C              +  S ++P A T  
Sbjct: 631 CFDKAASLWMAILENGLVPDIISYNTRIKGLCSCNRTPEGVQLLNEMLASGIIPTAITWN 690

Query: 578 LLKKSLWKEG 587
           +L +++ K G
Sbjct: 691 ILVRAVIKYG 700


>gi|224055765|ref|XP_002298642.1| predicted protein [Populus trichocarpa]
 gi|222845900|gb|EEE83447.1| predicted protein [Populus trichocarpa]
          Length = 567

 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 113/516 (21%), Positives = 211/516 (40%), Gaps = 53/516 (10%)

Query: 56  NSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKS 115
           +SLS  L  R++DP ++TH          AL         P F+HN  T H++   L+ S
Sbjct: 44  DSLSQSLVARVIDPHLLTHH-------SLALGFFNWASQQPGFTHNSLTYHSVLKSLSFS 96

Query: 116 QRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
           ++ + +++L+    +      S  +  ++      G  ++  S +NE + ++  L TE+ 
Sbjct: 97  RQFNAIESLLKRAKAQNLTLDSSIYRFVVDSLIKRGKTQMAFSVFNEIKSQSLDLGTETS 156

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           N +++     G    A++ F ++ + G   ++  + V I  L   G L   L +   +  
Sbjct: 157 NSLLASLGSDGCFNNAMKVFDEMNNRGIGFSTIGFGVFIWRLCRNGDLGEVLRLVDEVEG 216

Query: 236 MR-IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQ 293
              +   S   +++V G     R  EA   LNE+R  G  P   A RV  E  + +G + 
Sbjct: 217 RNSLINGSVIAVLIVHGLCEGSRTSEALRALNELRIRGWKPDFIAYRVVAEAFRSLGSVF 276

Query: 294 GANEFL---REMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALA 350
             NE L   R++    R  + R +  G   +    +    G  IA G    P  D     
Sbjct: 277 DVNEVLKMKRKLGVAPRSNDYREFILGLITERRIYEAKELGEVIASGN--FPMED----- 329

Query: 351 NTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
           + L+     V ++                      P +A  FF +V  + G    +  L 
Sbjct: 330 DVLNALIGSVSTI---------------------DPYSAMKFFHFVIGK-GKFPTLLTLS 367

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR-- 468
            +   L +HG ++ +  +   L S+       +  ++  F  +  +   A +   + R  
Sbjct: 368 NLCRNLCKHGKIDELLEVYRVLSSNEYFSDMESYNVMFSFLCMGGRVREAYEVLQEMRKK 427

Query: 469 TLCGPISKFKLMLLYSSLLRTLTKCKRDF--DAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
            L   IS      +Y+SL+  L  C+ D    A  + +EM   G   +++T++ L+  F+
Sbjct: 428 GLDPDIS------MYNSLIEVL--CREDLLRPAKRLWDEMFVIGCGGNLKTYNILIGKFS 479

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
             G  +   +LF+ + + GV PDA   + L++A C+
Sbjct: 480 EIGQIEEATRLFNHMLEKGVTPDATTHRFLLEALCQ 515



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 86/214 (40%), Gaps = 3/214 (1%)

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
           ++ NF      L+AL   ++       +K     I   KF  + +   NL +     G +
Sbjct: 321 ASGNFPMEDDVLNALIGSVSTIDPYSAMKFFHFVIGKGKFPTL-LTLSNLCRNLCKHGKI 379

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           + +L  +            ESYN++ S     G+  EA E  +++  +G  P+   Y  +
Sbjct: 380 DELLEVYRVLSSNEYFSDMESYNVMFSFLCMGGRVREAYEVLQEMRKKGLDPDISMYNSL 439

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           IE L     L  A  ++  + ++      K Y IL+  F  + + +EA  L N M + G 
Sbjct: 440 IEVLCREDLLRPAKRLWDEMFVIGCGGNLKTYNILIGKFSEIGQIEEATRLFNHMLEKGV 499

Query: 274 FP-GRAMRVALERM-QEMGFIQGANEFLREMLPD 305
            P     R  LE + QE  F    + F + +  D
Sbjct: 500 TPDATTHRFLLEALCQETMFETAVDVFYKHVNHD 533


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 92/460 (20%), Positives = 170/460 (36%), Gaps = 65/460 (14%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T + +   L ++++      ++ ++SS         F  LM+ +   G +E  L      
Sbjct: 198 TFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARM 257

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
            +     ++ + N++++ Y K G+  +A+   +Q I +G  P+  T++  +  L   G +
Sbjct: 258 SEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHV 317

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
           D AL+V   +     +     Y  ++         +EAK ++N+M D G           
Sbjct: 318 DHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSG----------- 366

Query: 284 ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPW 343
                              LPD    N                     V +    QL+  
Sbjct: 367 ------------------CLPDTTTFNTLI------------------VALCTENQLEEA 390

Query: 344 LDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYT 403
           LD  A   T+   SP V +      F      +CKV      P  A   F  +    G T
Sbjct: 391 LD-LARELTVKGLSPNVYT------FNILINALCKV----GDPHLAVRLFEEMK-SSGCT 438

Query: 404 HDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKA 463
            D      ++  L   G +     L+ ++   G      T   IID     ++ + A + 
Sbjct: 439 PDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEV 498

Query: 464 FHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
           F   D T  G     +  + +++L+  L   +R  DA  ++++MI  G+ P+  T++ ++
Sbjct: 499 FDQMDVTGIG-----RNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSIL 553

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            H+  QG+      +   +  NG E D   +  LI   CK
Sbjct: 554 THYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCK 593



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 94/224 (41%), Gaps = 38/224 (16%)

Query: 374 RLVCKVLRHFKSPETAWHFF-CWVAYQPGYT--HDVYALEKMLTILARHGHVELVDRLIA 430
           RLV   LR    PE A       +A   G T   DVY  E+++  L   G  +L+  L+ 
Sbjct: 58  RLV-TALREQADPEAALRMLNSALARDDGLTPSRDVY--EEIIRKLGTAGAFDLMKVLVG 114

Query: 431 KLRSDGMRLPFSTIRLIIDFYG-----------ISKKAD-----AALKAFHDDRTLCGPI 474
           ++R +G  +    ++  I  Y            +S + D     A  + ++   T+    
Sbjct: 115 EMRREGHEVGLGLVQSFIGSYARLQLFDDAFDLVSNQLDMFGVQANTEVYNHLLTVLAEG 174

Query: 475 SKFKLM----------------LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
           SK KL+                + +++++  L + ++   A+ +LEEM    + PD  TF
Sbjct: 175 SKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTF 234

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           + LM  F  +G  +   +L + + + G  P +    VLI  YCK
Sbjct: 235 TTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCK 278



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/229 (20%), Positives = 85/229 (37%), Gaps = 53/229 (23%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA----------- 460
           +LT+LA    ++L++    ++ S G+     T   +ID    +++A  A           
Sbjct: 167 LLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCD 226

Query: 461 -----------LKAFHDDRTL--------------CGPISKFKLMLLYSSLLRTLTKCKR 495
                      ++ F ++ ++              C P S     +  + L+    K  R
Sbjct: 227 VAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTS-----VTVNVLINGYCKLGR 281

Query: 496 DFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV 555
             DA+  +++ I  G  PD  TFS  +      G      K+  ++ Q G EPD Y +  
Sbjct: 282 VGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYST 341

Query: 556 LIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           +I   C              + +S  +PD  T   L  +L  E + +EA
Sbjct: 342 VINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEA 390



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS+++  L       +A  ++ +M+ SG +PD  TF+ L+     +   +    L   + 
Sbjct: 339 YSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELT 398

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
             G+ P+ Y F +LI A CK             + +S   PD  T  +L  +L   G+  
Sbjct: 399 VKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLA 458

Query: 591 EA 592
           +A
Sbjct: 459 KA 460



 Score = 42.4 bits (98), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 69/176 (39%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
             S N  T + L   L K    H    L  ++ SS      V +  L+    +SG L   
Sbjct: 401 GLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKA 460

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           L    E        ST +YN ++    K  +  EA E F Q+   G   N+ T+  +I+ 
Sbjct: 461 LDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDG 520

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           L N  ++D A E+   +    ++  +  Y  ++  +       +A  +L  M  +G
Sbjct: 521 LCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANG 576


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 88/412 (21%), Positives = 173/412 (41%), Gaps = 41/412 (9%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN +++   K+G    A++  R++ +     +  TY+ +I+ L   G +D+A+ +F  +
Sbjct: 172 TYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM 231

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
               IK +   Y  LV G     ++++   LL +M      P      V ++   + G +
Sbjct: 232 ETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKL 291

Query: 293 QGANEFLREMLPDKRIKNVRYYE---DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKAL 349
           Q ANE  +EM+      N   Y    DG       ++ NN              LD    
Sbjct: 292 QEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANN-------------MLDLMVR 338

Query: 350 ANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYAL 409
            N     SP++V+      F    +  CKV    K  +     F  ++ + G   +    
Sbjct: 339 NNC----SPDIVT------FTSLIKGYCKV----KRVDEGMKLFRKIS-KRGLVANTVTY 383

Query: 410 EKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRT 469
             ++    + G +E+ + L  ++ S G+     T  +++D    + K + AL+ F D + 
Sbjct: 384 SILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQK 443

Query: 470 LCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
                SK  L +++Y+ ++  + K  +  DA N+   +   G+ P+V T++ ++     +
Sbjct: 444 -----SKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKK 498

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLK 580
           G       L   + ++G EP+   +  LI+A   +L + +L   A   E +K
Sbjct: 499 GSLSEANILLRKMEEDGNEPNDCTYNTLIRA---HLRDGDLTASAKLIEEMK 547



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 89/212 (41%), Gaps = 7/212 (3%)

Query: 64  DRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT 123
           + L+D + + + L  A N       M  L    N S +  T  +L     K +R  E   
Sbjct: 314 NSLMDGYCMQNRLSEANN-------MLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMK 366

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L   IS    +  +V +  L+Q +  SG LE+    + E      L    +Y I++    
Sbjct: 367 LFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLC 426

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
             GK  +A+E F  +       +   YT++IE +   GK++ A  +F +LP   +K    
Sbjct: 427 DNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVM 486

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            Y +++ G        EA  LL +M +DG  P
Sbjct: 487 TYTVMISGLCKKGSLSEANILLRKMEEDGNEP 518



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 87/169 (51%), Gaps = 1/169 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F +L++ Y     ++  +  + +  +R  + +T +Y+I++  + ++GK   A E F++
Sbjct: 346 VTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQE 405

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++  G +P+  TY ++++ L + GKL+ ALE+F  L   ++      Y I++EG     +
Sbjct: 406 MVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGK 465

Query: 258 FDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPD 305
            ++A +L   +   G  P      V +  + + G +  AN  LR+M  D
Sbjct: 466 VEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEED 514



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/225 (20%), Positives = 101/225 (44%), Gaps = 2/225 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D+A+S+ + +++      +  T ++L   L K+ + ++   L+ D++S K +   + F  
Sbjct: 222 DAAISLFKEMETK-GIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNV 280

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  +   G L+     + E   +    +T +YN +M  Y    +  EA      ++   
Sbjct: 281 LIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNN 340

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  T+T +I+    + ++D  +++F  +    +   +  Y ILV+GF    + + A+
Sbjct: 341 CSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAE 400

Query: 263 SLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDK 306
            L  EM   G  P      + L+ + + G ++ A E   ++   K
Sbjct: 401 ELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 445



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 6/176 (3%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           + G   +V     ++  + + G   L   L+ K+    ++    T   IID        D
Sbjct: 163 ENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCID 222

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
           AA+  F +  T  G  S    ++ Y+SL+  L K  +  D + +L++M    I+P+V TF
Sbjct: 223 AAISLFKEMETK-GIKSS---LVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITF 278

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC--KYLSNSNLMPD 572
           + L+  F  +G  +   +L+  +   G+ P+   +  L+  YC    LS +N M D
Sbjct: 279 NVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLD 334



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/300 (21%), Positives = 125/300 (41%), Gaps = 17/300 (5%)

Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
           G ++  +S + E   +    S  +YN ++    K GK  + V+  + +     IPN  T+
Sbjct: 219 GCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITF 278

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
            V+I+  V  GKL  A E++  +    I   +  Y  L++G+    R  EA ++L+ M  
Sbjct: 279 NVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVR 338

Query: 271 DGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYY--------EDGSDDD 321
           +   P      +L +   ++  +    +  R++     + N   Y        + G  + 
Sbjct: 339 NNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEI 398

Query: 322 EDE--NDDNNSGVR---IAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLV 376
            +E   +  + GV    + YG+ L    D   L   L+ +     S + +   V  T ++
Sbjct: 399 AEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM-NLDIVMYTIII 457

Query: 377 CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
             + +  K  E AW+ FC +  + G   +V     M++ L + G +   + L+ K+  DG
Sbjct: 458 EGMCKGGKV-EDAWNLFCSLPCK-GVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDG 515



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/199 (20%), Positives = 84/199 (42%), Gaps = 22/199 (11%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           DV+    ++  L R G ++    L  ++ + G++    T   ++   G+ K        +
Sbjct: 204 DVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVG--GLCKAG-----KW 256

Query: 465 HDDRTLCGPISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL 521
           +D   L   ++  K++   + ++ L+    K  +  +A  + +EMI  GI P+  T++ L
Sbjct: 257 NDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSL 316

Query: 522 MYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNL 569
           M  + +Q        +  ++ +N   PD   F  LI+ YCK             +S   L
Sbjct: 317 MDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGL 376

Query: 570 MPDAATKELLKKSLWKEGR 588
           + +  T  +L +   + G+
Sbjct: 377 VANTVTYSILVQGFCQSGK 395



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 78/180 (43%), Gaps = 22/180 (12%)

Query: 443 TIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM---LLYSSLLRTLTKCKRDFDA 499
           T   +I  Y   K+ D  +K F         ISK  L+   + YS L++   +  +   A
Sbjct: 347 TFTSLIKGYCKVKRVDEGMKLFR-------KISKRGLVANTVTYSILVQGFCQSGKLEIA 399

Query: 500 INVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
             + +EM+  G++PDV T+  L+      G  +   ++F  ++++ +  D  M+ ++I+ 
Sbjct: 400 EELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEG 459

Query: 560 YCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
            CK             L    + P+  T  ++   L K+G   EA  +  + E+  + P+
Sbjct: 460 MCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPN 519


>gi|115477950|ref|NP_001062570.1| Os09g0110200 [Oryza sativa Japonica Group]
 gi|46806362|dbj|BAD17538.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|46806431|dbj|BAD17588.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|113630803|dbj|BAF24484.1| Os09g0110200 [Oryza sativa Japonica Group]
          Length = 794

 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 102/513 (19%), Positives = 195/513 (38%), Gaps = 33/513 (6%)

Query: 56  NSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKS 115
           ++LS  L  R L    V+  LR + +AD A+    A         + S   AL    + +
Sbjct: 91  SALSPRLRSRPLHAHAVSLLLRLSSHADEAMFDALADARAAGLPASSSAFAALVAAHSSA 150

Query: 116 QRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
            R+ +       +   +    +  +  +++    SG + L L+ +N         +  +Y
Sbjct: 151 GRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATY 210

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           N++M    K G   +A++ F +++D G +PN + YTV++  L N GK+D A+++  ++  
Sbjct: 211 NVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKD 270

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGA 295
                    Y   + G   V R +EA   L  ++D G   G               ++G 
Sbjct: 271 KGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALG---------------LKGY 315

Query: 296 NEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDE 355
           +  +  +   +R      +++G    +   + N S   + Y + ++   +   + + L  
Sbjct: 316 SCLIDGLFQARR------FDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSF 369

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
                        F + T  V KVL      E A H       Q     D      M+  
Sbjct: 370 LDVMKKKGFVPDTFCYNT--VLKVLCDHGDLERA-HTLRSEMLQNNLVLDSTTQTIMICG 426

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
           L + G V+   ++  ++   G      T   +ID +    + + A   FH       P  
Sbjct: 427 LCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSL 486

Query: 476 KFKLMLLYSS---------LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
             +L L  +          L+  + +  +   A  +L  +I SG+VPDV T++ L+    
Sbjct: 487 FLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLC 546

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
              +     +LF  ++  G+ PD   +  LI  
Sbjct: 547 KARNLDGAVRLFKELQLKGISPDEITYGTLIDG 579



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 126/599 (21%), Positives = 225/599 (37%), Gaps = 111/599 (18%)

Query: 67  LDPFIVTHALRSA--PNAD-------SALSIMEALKSNPNFSHNQSTLHALATVLAKSQR 117
           L P  V+ AL  A  P A        SALS    L+S P  +H  S L  L+     S  
Sbjct: 65  LTPHAVSDALLCAAIPAASRLRLFLFSALS--PRLRSRPLHAHAVSLLLRLS-----SHA 117

Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG---DLELVLSTWNEYRQRAKLLSTES 174
           +  +   + D  ++     S  F  L+  +S++G   D     S  +E++ R    +   
Sbjct: 118 DEAMFDALADARAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRP---TAFV 174

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YN ++     +G    A+  + +++  G  PN  TY V+++ L   G    AL++F  + 
Sbjct: 175 YNTILKALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEML 234

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQG 294
              I    K Y +L+       + DEA  LL  M+D G  P        + +    F+ G
Sbjct: 235 DRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLP--------DEVTYNAFLSG 286

Query: 295 ANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPW---LDPKALAN 351
             +  R    ++  + +   +DG                  + + LK +   +D    A 
Sbjct: 287 LCKVGRV---NEAFQRLVMLQDG-----------------GFALGLKGYSCLIDGLFQAR 326

Query: 352 TLDEW------------SPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQ 399
             DE             SP+VV        ++T  ++ +        E A  F   V  +
Sbjct: 327 RFDEGFGYYKTMLERNISPDVV--------LYT--IMIRGCAEAGRIEDALSFL-DVMKK 375

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA-- 457
            G+  D +    +L +L  HG +E    L +++  + + L  +T  ++I   G+ K+   
Sbjct: 376 KGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMI--CGLCKRGLV 433

Query: 458 DAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM---------- 506
           D A++ F +     C P      ++ Y++L+    +  R  +A  +  +M          
Sbjct: 434 DEAMQIFDEMGEHGCDPT-----VMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFL 488

Query: 507 ---IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY 563
              + +  V D ++   L++     G      KL   +  +GV PD   +  LI   CK 
Sbjct: 489 RLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKA 548

Query: 564 ------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLAL 610
                       L    + PD  T   L   L +  R  +A  + +   +    PSL++
Sbjct: 549 RNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSI 607



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 16/167 (9%)

Query: 168 KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227
           ++  +ES   ++    ++G+  +A +  R +ID G +P+  TY  +I  L     LD A+
Sbjct: 496 QVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAV 555

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG----RAMRVAL 283
            +F  L L  I      Y  L++G +   R ++A  L   +   G  P      +M  +L
Sbjct: 556 RLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSL 615

Query: 284 ERMQEMGFIQGANEFLREMLPDKR--------IKNV-RYYEDGSDDD 321
            RM+++   Q  N +L + LP K         + N  +  EDGS DD
Sbjct: 616 CRMKKLS--QAINLWL-DYLPKKYNFPVESEVLANAHKEIEDGSLDD 659



 Score = 45.8 bits (107), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 13/154 (8%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++LY+ ++R   +  R  DA++ L+ M   G VPD   ++ ++      GD +    L S
Sbjct: 347 VVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRS 406

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEG 587
            + QN +  D+    ++I   CK             +      P   T   L    ++EG
Sbjct: 407 EMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREG 466

Query: 588 RRKEAAAVEERCEKINDVPSLALRGHIWAVSSAD 621
           R +EA  +  + E  N+ PSL LR  + A    D
Sbjct: 467 RLEEARMLFHKMEMGNN-PSLFLRLTLGANQVCD 499


>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
 gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
          Length = 571

 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 104/514 (20%), Positives = 207/514 (40%), Gaps = 67/514 (13%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           +D ++V   +++    +  +          N+ H+ ST  AL   L   ++  E+  +I 
Sbjct: 88  VDHWLVREIMKTDIGVNVKMQFFRWAAKRRNYEHDTSTYMALIHCLEVVEQYGEMWKMIQ 147

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELV---LSTWNEYRQRAKLLSTESYNIVMSVYA 183
           ++  +    V+     L +     G+ ++V   ++ + + + R    + ++YN ++ +  
Sbjct: 148 EMVRNPICVVTPT--ELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLM 205

Query: 184 KTGKNFEAVETFRQVIDEG-AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
             G+  +  E + ++  EG   P++ TY+ +I     LG+ DSA+++ + +    ++ T+
Sbjct: 206 HEGQYEKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTT 265

Query: 243 KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER-MQEMGFIQGANEFLRE 301
           K Y +LV  F  +     A SL  EMR     P       L R + + G I  A  F  E
Sbjct: 266 KIYTMLVALFFKLNDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYE 325

Query: 302 ML-----PDKRIKN--VRYY-EDGSDDDEDENDDNNSGVR-----IAYGVQLKPWLDPKA 348
           M      PD  + N  + +  + G  DD  +       +R     + Y   +K   + K+
Sbjct: 326 MQREGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKS 385

Query: 349 LANTLDEWSPEVV-SLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHD 405
            A+ +  W   +  S ++ + F ++  +   CK  R                        
Sbjct: 386 RASEVPSWFERMKESGISPSSFTYSILIDGFCKTNR------------------------ 421

Query: 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465
              +EK + +L              ++   G     +    +ID  G +K+ D A + F 
Sbjct: 422 ---MEKAMMLLE-------------EMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQ 465

Query: 466 DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF 525
           + +  CG  S      +Y+ +++ L K  R  DAIN+ +EM   G  PDV  ++ LM   
Sbjct: 466 ELKENCGSSSS----RVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGL 521

Query: 526 ALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
           A  G           ++++G  PD   + +++  
Sbjct: 522 ARTGMLDEALSTMRRMQEHGCIPDINSYNIILNG 555



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 82/473 (17%), Positives = 178/473 (37%), Gaps = 38/473 (8%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + H L           +++ +  NP      + L  +  +L  ++   +   +   I + 
Sbjct: 129 LIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSEVVRMLGNAKMVSKAIAIFYQIKTR 188

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLL-STESYNIVMSVYAKTGKNFE 190
           K    +  + +++      G  E V   +NE          T +Y+ ++S + K G+   
Sbjct: 189 KCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDS 248

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A++   ++ D G  P ++ YT+++     L  +  AL +F  +     +     Y  L+ 
Sbjct: 249 AIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQYCRPDVFTYTELIR 308

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIK 309
           G     R DEA     EM+ +G  P    M   +  + + G +  A +  +EM   + I 
Sbjct: 309 GLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIP 368

Query: 310 NVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVV-SLLADAK 368
           +V                      + Y   +K   + K+ A+ +  W   +  S ++ + 
Sbjct: 369 SV----------------------VTYNTIIKALFESKSRASEVPSWFERMKESGISPSS 406

Query: 369 FVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVD 426
           F ++  +   CK  R  K+             + G+     A   ++  L +    +L  
Sbjct: 407 FTYSILIDGFCKTNRMEKA-----MMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLAC 461

Query: 427 RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFKLMLLYSS 485
            L  +L+ +          ++I   G + + D A+  F +   L C P      +  Y++
Sbjct: 462 ELFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPD-----VYAYNA 516

Query: 486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF 538
           L+  L +     +A++ +  M   G +PD+ +++ ++     Q D  +  + F
Sbjct: 517 LMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLQKQEDLIVQWRCF 569



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 94/220 (42%), Gaps = 26/220 (11%)

Query: 391 HFFCWVAYQPGYTHDV---YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLI 447
            FF W A +  Y HD     AL   L ++ ++G  E+   +   +R+    +  + +  +
Sbjct: 108 QFFRWAAKRRNYEHDTSTYMALIHCLEVVEQYG--EMWKMIQEMVRNPICVVTPTELSEV 165

Query: 448 IDFYGISKKADAALKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVL-EE 505
           +   G +K    A+  F+  +T  C P ++      Y+S++  L   +  ++ ++ L  E
Sbjct: 166 VRMLGNAKMVSKAIAIFYQIKTRKCQPTAQ-----AYNSMIIMLMH-EGQYEKVHELYNE 219

Query: 506 MIFSG-IVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY- 563
           M   G   PD  T+S L+  F   G      +L + ++ NG++P   ++ +L+  + K  
Sbjct: 220 MSTEGHCFPDTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLN 279

Query: 564 -----------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                      + +    PD  T   L + L K GR  EA
Sbjct: 280 DVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEA 319



 Score = 42.0 bits (97), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 21/171 (12%)

Query: 54  SSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLA 113
           S  S SS     L+D F  T+ +      + A+ ++E +     F    +   +L   L 
Sbjct: 400 SGISPSSFTYSILIDGFCKTNRM------EKAMMLLEEMDEK-GFPPCPAAYCSLIDALG 452

Query: 114 KSQRN-------HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR 166
           K++R         ELK   G  SSS+   V +  +        +G L+  ++ ++E  + 
Sbjct: 453 KAKRYDLACELFQELKENCGS-SSSRVYAVMIKHLG------KAGRLDDAINMFDEMNKL 505

Query: 167 AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217
                  +YN +MS  A+TG   EA+ T R++ + G IP+  +Y +++  L
Sbjct: 506 GCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGL 556



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 72/160 (45%), Gaps = 7/160 (4%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           DV+   +++  L + G ++       +++ +G R     +  +I+F G + + D A+K F
Sbjct: 299 DVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDAMKLF 358

Query: 465 HDDRTL-CGPISKFKLMLLYSSLLRTLTKCK-RDFDAINVLEEMIFSGIVPDVQTFSGLM 522
            +  TL C P      ++ Y+++++ L + K R  +  +  E M  SGI P   T+S L+
Sbjct: 359 QEMGTLRCIPS-----VVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILI 413

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
             F      +    L   + + G  P    +  LI A  K
Sbjct: 414 DGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGK 453


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 110/470 (23%), Positives = 185/470 (39%), Gaps = 76/470 (16%)

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
           LEL    +N   +   L    +Y  +++ + + G   E      ++ ++G  P+  TY V
Sbjct: 217 LELFWRFYNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNV 276

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +I  L   G++D A E+   +    +      Y IL++GF   +R  EAK +L EM   G
Sbjct: 277 VIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKG 336

Query: 273 KFPGRAMRVALERMQEMGFI-QG-ANEFLR---EMLP----------DKRIKNVRYYEDG 317
             PG     AL      GF+ QG + E  R   EML           +  +K V  + D 
Sbjct: 337 LKPGHVAYTALID----GFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDM 392

Query: 318 SDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVC 377
              D   N+       I  G+  KP  D +   N ++ +  E             T  V 
Sbjct: 393 EKADALLNE------MIMVGI--KP--DTQTYNNMIEGYLKE-----------QNTSRVK 431

Query: 378 KVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM 437
            +L   K            AY  G          ++  L RHG +E   R+   + S G+
Sbjct: 432 DLLSEMKKSNLV-----PTAYTCGM---------IINGLCRHGSIEDASRVFEIMVSLGV 477

Query: 438 RLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL---MLLYSSLLRTLTKCK 494
           + P + I      Y    K       F +   +   + K  +   +L Y+S++  L K +
Sbjct: 478 K-PNAVI------YTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSR 530

Query: 495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK 554
           +  +A + L EMI  G+ P+V T+  L++ +   G+ ++  + F  +   G+ P+  +  
Sbjct: 531 KMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCT 590

Query: 555 VLIQAYCKYLSNS------------NLMPDAATKELLKKSLWKEGRRKEA 592
            LI  YCK  S +            ++ PD  T   L   L + G+ + A
Sbjct: 591 ALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGA 640



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 103/495 (20%), Positives = 184/495 (37%), Gaps = 60/495 (12%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           + N+++ Y    +   V    +E ++   + +  +  ++++   + G   +A   F  ++
Sbjct: 414 YNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMV 473

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
             G  PN+  YT +I+  V  G+   A+ +   +    ++     Y  ++ G     + +
Sbjct: 474 SLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKME 533

Query: 260 EAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREML-----PDKRIKNV-- 311
           EAK  L EM + G  P      AL     + G +Q A+ + +EML     P+  +     
Sbjct: 534 EAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALI 593

Query: 312 -RYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFV 370
             Y ++GS        +  S  R   G  + P          +  +S  +  LL + K  
Sbjct: 594 DGYCKEGS------TTEATSIFRCMLGRSVHP---------DVRTYSALIHGLLRNGKLQ 638

Query: 371 WTTRLVCKVLRHFKSPETAWH-----FFCWVA------------YQPGYTHDVYALEKML 413
               L+ + L     P+   +      FC                Q G + ++     ++
Sbjct: 639 GAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALI 698

Query: 414 TILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG- 472
             L + G +E    L   +   G+     T   IID Y  S     A + F D+ TL G 
Sbjct: 699 NGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLF-DEMTLKGV 757

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
           P   F    +YS+L+    K      A+++  E +  G      + + LM  F   G   
Sbjct: 758 PPDSF----VYSALIDGCRKEGNTEKALSLFLESVQKGFAS-TSSLNALMDGFCKSGKVI 812

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLK 580
              +L   +    V+PD   + +LI  +CK             +   NLMP+A T   L 
Sbjct: 813 EANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALL 872

Query: 581 KSLWKEGRRKEAAAV 595
                 GRR E  A+
Sbjct: 873 SGYNMAGRRSEMFAL 887



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 73/390 (18%), Positives = 151/390 (38%), Gaps = 30/390 (7%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y  ++  + + G + EA     +++  G   N  TY  +++ +   G ++ A  + + +
Sbjct: 343 AYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEM 402

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFI 292
            ++ IK  ++ Y  ++EG++  +     K LL+EM+     P      + +  +   G I
Sbjct: 403 IMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSI 462

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
           + A+     M+      N   Y         E        R    V++   +D K +   
Sbjct: 463 EDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEG-------RFQEAVRILKVMDKKGVQPD 515

Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
           +  ++  ++ L    K       + +++     P                  +VY    +
Sbjct: 516 VLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKP------------------NVYTYGAL 557

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
           +    + G +++ DR   ++   G+         +ID Y        A   F   R + G
Sbjct: 558 IHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIF---RCMLG 614

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
             S    +  YS+L+  L +  +   A+ +L E +  G+VPDV T++ ++  F  QG   
Sbjct: 615 R-SVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIG 673

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
              +L   + Q G+ P+   +  LI   CK
Sbjct: 674 KAFQLHEYMCQKGISPNIITYNALINGLCK 703



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 103/261 (39%), Gaps = 26/261 (9%)

Query: 387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
           E  W F+  +  +    HDVY    ++    R G+ +   RL+ ++   G      T  +
Sbjct: 218 ELFWRFYNGM-LEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNV 276

Query: 447 IIDFYGISKKADAA--LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLE 504
           +I     + + D A  LK   D + L   +        YS L+    K KR  +A  +LE
Sbjct: 277 VIGGLCRAGEVDEAFELKKLMDKKGLVADV------FTYSILIDGFGKQKRCTEAKLMLE 330

Query: 505 EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY- 563
           EM   G+ P    ++ L+  F  QGD     ++   +   GV+ + + +  L++  CK+ 
Sbjct: 331 EMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFG 390

Query: 564 -------LSNSNLM----PDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS----- 607
                  L N  +M    PD  T   + +   KE        +    +K N VP+     
Sbjct: 391 DMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCG 450

Query: 608 LALRGHIWAVSSADLTRVHSI 628
           + + G     S  D +RV  I
Sbjct: 451 MIINGLCRHGSIEDASRVFEI 471



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 89/216 (41%), Gaps = 7/216 (3%)

Query: 58  LSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVL 112
           L   +  + + P I+T+      L  A   + A  + + +      +HN  T   +    
Sbjct: 678 LHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGI-PGKGLAHNAVTYATIIDGY 736

Query: 113 AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
            KS    +   L  +++       S  +  L+      G+ E  LS + E  Q+    ST
Sbjct: 737 CKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKG-FAST 795

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            S N +M  + K+GK  EA +    ++D+   P+  TYT++I++    G L  A + F  
Sbjct: 796 SSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVD 855

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           +    +   +  Y  L+ G+    R  E  +L +EM
Sbjct: 856 MQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEM 891



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 91/209 (43%), Gaps = 16/209 (7%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           + G   DV+    ++    +         ++ ++ S G++        +ID  G  ++ D
Sbjct: 299 KKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALID--GFMRQGD 356

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
           +  +AF     +     K  L   Y++L++ + K      A  +L EMI  GI PD QT+
Sbjct: 357 SG-EAFRVKEEMLARGVKLNL-FTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTY 414

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLS------------N 566
           + ++  +  + +   V+ L S ++++ + P AY   ++I   C++ S            +
Sbjct: 415 NNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVS 474

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEAAAV 595
             + P+A     L K   +EGR +EA  +
Sbjct: 475 LGVKPNAVIYTTLIKGHVQEGRFQEAVRI 503



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 92/455 (20%), Positives = 170/455 (37%), Gaps = 37/455 (8%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L KS++  E K  + ++           +  L+  Y  SG++++    + E        +
Sbjct: 526 LCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPN 585

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
                 ++  Y K G   EA   FR ++     P+ RTY+ +I  L+  GKL  A+E+ S
Sbjct: 586 DVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLS 645

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMG 290
                 +      Y  ++ GF       +A  L   M   G  P      AL   + + G
Sbjct: 646 EFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAG 705

Query: 291 FIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALA 350
            I+ A E L + +P K +                   +N+   + Y   +  +     L+
Sbjct: 706 EIERARE-LFDGIPGKGLA------------------HNA---VTYATIIDGYCKSGNLS 743

Query: 351 NTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
                +    +  +    FV++  +     R   + E A   F   + Q G+     +L 
Sbjct: 744 KAFRLFDEMTLKGVPPDSFVYSALI--DGCRKEGNTEKALSLF-LESVQKGFA-STSSLN 799

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470
            ++    + G V   ++L+  +    ++    T  ++ID++  +     A + F D    
Sbjct: 800 ALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVD---- 855

Query: 471 CGPISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
              + K  LM   L Y++LL       R  +   + +EMI   I PD  T+S ++     
Sbjct: 856 ---MQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLK 912

Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           +GD     KL   + + G      +  VLI   C+
Sbjct: 913 EGDHVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCR 947


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 95/442 (21%), Positives = 175/442 (39%), Gaps = 56/442 (12%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SY  V++ + K G + +A  T+ +++D G +P+  TY  +I  L     +D A+EV + +
Sbjct: 198 SYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTM 257

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
               +      Y  ++ G+    +  EA   L +MR DG  P                  
Sbjct: 258 VKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEP------------------ 299

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVR---IAYGVQLKPWLDPKALA 350
             +     +L D   KN R  E     D         G++     YG  L+ +    AL 
Sbjct: 300 --DVVTYSLLMDYLCKNGRCMEARKIFDS----MTKRGLKPEITTYGTLLQGYATKGALV 353

Query: 351 NTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
                    V + +    +V++  L+C   +  K  +    F      Q G   +     
Sbjct: 354 EMHGLLDLMVRNGIHPDHYVFSI-LICAYAKQGKVDQAMLVF--SKMRQQGLNPNAVTYG 410

Query: 411 KMLTILARHGHVE----LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD 466
            ++ IL + G VE      +++I +  S G  +  S I  +       +  +  L+    
Sbjct: 411 AVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML-- 468

Query: 467 DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
           DR +C         + ++S++ +  K  R  ++  + E M+  G+ P+V T++ L+  + 
Sbjct: 469 DRGICLNT------IFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYC 522

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAA 574
           L G      KL S +   G++P+   +  LI  YCK             + +S + PD  
Sbjct: 523 LAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDII 582

Query: 575 TKELLKKSLWKEGRRKEAAAVE 596
           T  ++ + L++   R+ AAA E
Sbjct: 583 TYNIILQGLFQT--RRTAAAKE 602



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 1/205 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+  A       D A+ +   ++     + N  T  A+  +L KS R  +       +  
Sbjct: 376 ILICAYAKQGKVDQAMLVFSKMRQQ-GLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID 434

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                 ++ + +L+    T    E       E   R   L+T  +N ++  + K G+  E
Sbjct: 435 EGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIE 494

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           + + F  ++  G  PN  TY  +I      GK+D A+++ S +  + +K  +  Y  L+ 
Sbjct: 495 SEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLIN 554

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP 275
           G+  + R ++A  L  EM   G  P
Sbjct: 555 GYCKISRMEDALVLFKEMESSGVSP 579



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 105/520 (20%), Positives = 201/520 (38%), Gaps = 39/520 (7%)

Query: 64  DRLLDPFIVTH-----ALRSAPNADSALSIMEALKSN---PNFSHNQSTLHALATVLAKS 115
           DR + P +VT+     AL  A   D A+ ++  +  N   P+     S LH   +     
Sbjct: 224 DRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPK 283

Query: 116 QRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
           +    LK +  D      +  S+    LM +   +G        ++   +R       +Y
Sbjct: 284 EAIGFLKKMRSDGVEPDVVTYSL----LMDYLCKNGRCMEARKIFDSMTKRGLKPEITTY 339

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
             ++  YA  G   E       ++  G  P+   ++++I      GK+D A+ VFS +  
Sbjct: 340 GTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQ 399

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQG 294
             +   +  Y  ++       R ++A     +M D+G  PG  +  +L   +      + 
Sbjct: 400 QGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWER 459

Query: 295 ANEFLREMLPDKRIKNVRYYEDGSDDDEDEND--DNNSGVRIAYGVQLKP-------WLD 345
           A E + EML      N  ++    D    E    ++     +   + +KP        ++
Sbjct: 460 AEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLIN 519

Query: 346 PKALANTLDEWS---PEVVSLLADAKFVWTTRLV---CKVLRHFKSPETAWHFFCWVAYQ 399
              LA  +DE       +VS+      V  + L+   CK+ R     E A   F  +   
Sbjct: 520 GYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRM----EDALVLFKEME-S 574

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
            G + D+     +L  L +         L  ++   G ++  ST  +I+     +K  D 
Sbjct: 575 SGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDD 634

Query: 460 ALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
           AL+ F +   LC  +   KL    ++ ++  L K  R+ +A ++      +G+VP+  T+
Sbjct: 635 ALQMFQN---LC--LMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTY 689

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
             +  +   QG  + + +LF  +  NG   D+ M   +++
Sbjct: 690 RLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVR 729



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 111/559 (19%), Positives = 215/559 (38%), Gaps = 68/559 (12%)

Query: 77  RSAPNADSALSIMEALKSNPN-FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLN 135
           R++   D  L  M  L   PN FS+N   L  L     +SQ   EL  ++ D        
Sbjct: 137 RTSDAMDIVLRRMTELGCIPNVFSYN-ILLKGLCDE-NRSQEALELLHMMADDRGGGSPP 194

Query: 136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF 195
             V++  ++  +   GD +   ST++E   R  L    +YN +++   K     +A+E  
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVL 254

Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
             ++  G +P+  TY  ++    + G+   A+     +    ++     Y +L++     
Sbjct: 255 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKN 314

Query: 256 ERFDEAKSLLNEMRDDGKFP----------GRAMRVALERMQEMGFIQGANEFLREMLPD 305
            R  EA+ + + M   G  P          G A + AL  M  +  +   N     + PD
Sbjct: 315 GRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG----IHPD 370

Query: 306 KRIKNV---RYYEDGSDDD--------EDENDDNNSGVRIAYGVQLKPWLDPKALANTLD 354
             + ++    Y + G  D           +  + N+   + YG  +        + + + 
Sbjct: 371 HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNA---VTYGAVIGILCKSGRVEDAML 427

Query: 355 EWSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
            +   +   L+    V+ + +  +C   +  ++ E             G   +      +
Sbjct: 428 YFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML-----DRGICLNTIFFNSI 482

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
           +    + G V   ++L   +   G++    T   +I+ Y ++ K D A+K       L G
Sbjct: 483 IDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMK------LLSG 536

Query: 473 PIS-KFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG- 529
            +S   K   + YS+L+    K  R  DA+ + +EM  SG+ PD+ T     Y+  LQG 
Sbjct: 537 MVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIIT-----YNIILQGL 591

Query: 530 ----DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK---------YLSNSNLMP---DA 573
                    ++L+  + ++G + +   + +++   CK            N  LM    +A
Sbjct: 592 FQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEA 651

Query: 574 ATKELLKKSLWKEGRRKEA 592
            T  ++  +L K GR  EA
Sbjct: 652 RTFNIMIDALLKVGRNDEA 670



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 8/137 (5%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+S++  L K +    A+ VL  M+ +G++PD  T++ +++ +   G  K        +R
Sbjct: 234 YNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMR 293

Query: 543 QNGVEPDAYMFKVLIQAYCKYLSNSNLMP-----DAATKELLKKSLWKEGRRKEAAAVEE 597
            +GVEPD   + +L+   CK   N   M      D+ TK  LK  +   G   +  A + 
Sbjct: 294 SDGVEPDVVTYSLLMDYLCK---NGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKG 350

Query: 598 RCEKINDVPSLALRGHI 614
              +++ +  L +R  I
Sbjct: 351 ALVEMHGLLDLMVRNGI 367



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 98/493 (19%), Positives = 185/493 (37%), Gaps = 62/493 (12%)

Query: 125 IGDISSSKFLNVSVNFMNLMQWYS----TSGDLELVLSTWNEYRQRAKLLSTESYNIVMS 180
           +G++    F   ++ F  L++       TS  +++VL    E      + +  SYNI++ 
Sbjct: 110 LGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTEL---GCIPNVFSYNILLK 166

Query: 181 VYAKTGKNFEAVETFRQVIDE---GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
                 ++ EA+E    + D+   G+ P+  +YT +I      G  D A   +  +    
Sbjct: 167 GLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRG 226

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGAN 296
           I      Y  ++      +  D+A  +LN M  +G  P        L      G  + A 
Sbjct: 227 ILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAI 286

Query: 297 EFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDE- 355
            FL++M  D    +V  Y                 + + Y  +    ++ + + +++ + 
Sbjct: 287 GFLKKMRSDGVEPDVVTYS----------------LLMDYLCKNGRCMEARKIFDSMTKR 330

Query: 356 -WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT 414
              PE+ +     +   T           K      H    +  + G   D Y    ++ 
Sbjct: 331 GLKPEITTYGTLLQGYAT-----------KGALVEMHGLLDLMVRNGIHPDHYVFSILIC 379

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH---DDRTLC 471
             A+ G V+    + +K+R  G+     T   +I     S + + A+  F    D+    
Sbjct: 380 AYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP 439

Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
           G I       +Y+SL+  L  C +   A  ++ EM+  GI  +   F+ ++     +G  
Sbjct: 440 GNI-------VYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 492

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYC---------KYLS---NSNLMPDAATKELL 579
              +KLF ++ + GV+P+   +  LI  YC         K LS   +  L P+  T   L
Sbjct: 493 IESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTL 552

Query: 580 KKSLWKEGRRKEA 592
                K  R ++A
Sbjct: 553 INGYCKISRMEDA 565


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 87/436 (19%), Positives = 166/436 (38%), Gaps = 85/436 (19%)

Query: 174 SYNIVMSVYAKTGKNFEAV-ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           ++N +++   + G  FE V E   Q+ + G  P+ R Y  +I+ +   G  + A ++ S 
Sbjct: 250 TFNTLIAYLCRNGL-FEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSR 308

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM-RDDGKFPGRAMRVALERMQEMGF 291
           +P   +K     Y  +++G    ER++EA+ LL EM ++D         + ++   + G 
Sbjct: 309 MPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGL 368

Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDEN--DDNNSGVRIAYGVQLKPWLDPKAL 349
           +    E L +ML    I +V  Y    +    E   D+    ++       KP       
Sbjct: 369 VDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKP------- 421

Query: 350 ANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYAL 409
            NT+               +    + +C+  R   + E   H       Q G   +    
Sbjct: 422 -NTI--------------SYTIVLKGLCRAERWVDAQELISHMI-----QQGCLPNPVTF 461

Query: 410 EKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRT 469
             ++  + + G VE    L+ ++  +G      +   +ID  G + K + AL+       
Sbjct: 462 NTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALE------- 514

Query: 470 LCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
                                           +L  MI  GI P+   +S +    + +G
Sbjct: 515 --------------------------------LLNVMINKGITPNTIIYSSMASALSREG 542

Query: 530 -DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATK 576
             +KI+Q +F  ++   V  DA ++  +I + CK            Y+ ++  MP+ +T 
Sbjct: 543 RTDKIIQ-MFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTY 601

Query: 577 ELLKKSLWKEGRRKEA 592
            +L + L  EG  +EA
Sbjct: 602 TILIRGLASEGLVREA 617



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 7/229 (3%)

Query: 89  MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS 148
           M A    PN       L  L     +++R  + + LI  +     L   V F  L+ +  
Sbjct: 414 MSACGCKPNTISYTIVLKGLC----RAERWVDAQELISHMIQQGCLPNPVTFNTLINFMC 469

Query: 149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSR 208
             G +E  +    +           SY+ V+    K GK  EA+E    +I++G  PN+ 
Sbjct: 470 KKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTI 529

Query: 209 TYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
            Y+ M   L   G+ D  +++F ++    ++  +  Y  ++         D A      M
Sbjct: 530 IYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYM 589

Query: 269 RDDGKFPGRAMRVALER-MQEMGFIQGANEFLREMLPDKRIKN--VRYY 314
             +G  P  +    L R +   G ++ A + L E+   + ++   VR++
Sbjct: 590 VSNGCMPNESTYTILIRGLASEGLVREAQDLLSELCSRRAVRKHLVRHF 638



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 42/80 (52%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+++L+ L   KR  D   ++ EM+  G  P+V TF+ L+ +    G  + V +  S + 
Sbjct: 216 YNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMP 275

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
           ++G  PD  M+  +I   CK
Sbjct: 276 EHGCTPDLRMYATIIDGICK 295


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 95/442 (21%), Positives = 172/442 (38%), Gaps = 56/442 (12%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SY+ V++ + K G   +   T+ +++D+   PN  TY  +I  L     +D A+EV + +
Sbjct: 90  SYSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTM 149

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
               +      Y  +V GF    +  EA   L +MR DG  P                + 
Sbjct: 150 VKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPD---------------VV 194

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVR---IAYGVQLKPWLDPKALA 350
             N  +  +  + R    R   D              G++     YG  L+ +    AL 
Sbjct: 195 TYNSLMDYLCKNGRCTEARKIFDSM---------TKRGLKPEITTYGTLLQGYATKGALV 245

Query: 351 NTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
                    V + +    +V++  LVC   +  K  E    F      Q G   +     
Sbjct: 246 EMHGLLDLMVRNGIHPNHYVFSI-LVCAYAKQEKVEEAMLVF--SKMRQQGLNPNAVTYG 302

Query: 411 KMLTILARHGHVE----LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD 466
            ++ IL + G VE      +++I +  S G  +  S I  +       +  +  L+    
Sbjct: 303 AVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML-- 360

Query: 467 DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
           DR +C         + ++S++ +  K  R  ++  + + M+  G+ PD+ T+S L+  + 
Sbjct: 361 DRGICLNT------IFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYC 414

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAA 574
           L G      KL + +   G++PD   +  LI  YCK             + +S + PD  
Sbjct: 415 LAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDII 474

Query: 575 TKELLKKSLWKEGRRKEAAAVE 596
           T  ++ + L++   R+ AAA E
Sbjct: 475 TYNIILQGLFQ--TRRTAAAKE 494



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 105/526 (19%), Positives = 201/526 (38%), Gaps = 51/526 (9%)

Query: 64  DRLLDPFIVTH-----ALRSAPNADSALSIMEAL-KSN--PNFSHNQSTLHALATVLAKS 115
           D+ + P +VT+     AL  A   D A+ ++  + KS   P+     S +H   +    S
Sbjct: 116 DQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCS----S 171

Query: 116 QRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
            +  E    +  + S       V + +LM +   +G        ++   +R       +Y
Sbjct: 172 GQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTY 231

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
             ++  YA  G   E       ++  G  PN   +++++       K++ A+ VFS +  
Sbjct: 232 GTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQ 291

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQG 294
             +   +  Y  ++       R ++A     +M D+G  PG  +  +L   +      + 
Sbjct: 292 QGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWER 351

Query: 295 ANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSG------VRIAYG---VQLKPWLD 345
           A E + EML      N  ++    D    E     S       VRI      +     +D
Sbjct: 352 AEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLID 411

Query: 346 PKALANTLDEWS---PEVVSLLADAKFVWTTRLV---CKVLRH------FKSPETAWHFF 393
              LA  +DE +     +VS+      V  + L+   CK+ R       F+  E++    
Sbjct: 412 GYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESS---- 467

Query: 394 CWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGI 453
                  G + D+     +L  L +         L   +   G +L  ST  +I+     
Sbjct: 468 -------GVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHGLCK 520

Query: 454 SKKADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV 512
           +K  D AL+ F +   LC  +   KL    ++ ++  L K  R+ +A ++      +G+V
Sbjct: 521 NKLTDDALRMFQN---LC--LMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLV 575

Query: 513 PDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           P+  T+  +  +   QG  + + +LF  +  NG   D+ M   +++
Sbjct: 576 PNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVR 621



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 2/134 (1%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+S++  L K +    A+ VL  M+ SG++PD  T++ +++ F   G  K        +R
Sbjct: 126 YNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMR 185

Query: 543 QNGVEPDAYMFKVLIQAYCK--YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCE 600
            +GVEPD   +  L+   CK    + +  + D+ TK  LK  +   G   +  A +    
Sbjct: 186 SDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALV 245

Query: 601 KINDVPSLALRGHI 614
           +++ +  L +R  I
Sbjct: 246 EMHGLLDLMVRNGI 259



 Score = 40.0 bits (92), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 79/188 (42%), Gaps = 16/188 (8%)

Query: 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK 476
            + G V   ++L   +   G++    T   +ID Y ++ K D A K      +    +  
Sbjct: 379 CKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVS----VGM 434

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
               + YS+L+    K  R  DA+ +  EM  SG+ PD+ T++ ++            ++
Sbjct: 435 KPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKE 494

Query: 537 LFSMVRQNGVEPDAYMFKVLIQAYCK---------YLSNSNLMP---DAATKELLKKSLW 584
           L+  + ++G + +   + +++   CK            N  LM    +A T  ++  +L 
Sbjct: 495 LYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALL 554

Query: 585 KEGRRKEA 592
           K GR  EA
Sbjct: 555 KVGRNDEA 562


>gi|302756053|ref|XP_002961450.1| hypothetical protein SELMODRAFT_76818 [Selaginella moellendorffii]
 gi|300170109|gb|EFJ36710.1| hypothetical protein SELMODRAFT_76818 [Selaginella moellendorffii]
          Length = 224

 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 13/151 (8%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F  ++ WYS + D++  +  WN+  +   L +  +Y ++MS+  K  +  +  E F+ 
Sbjct: 4   VLFTTVIHWYSRADDIDRAVEMWNQMLKVGCLPNVVTYTMLMSLLTKLKRFRQVGEIFKD 63

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSAL-------------EVFSALPLMRIKRTSKQ 244
           ++  G  PN RTYTV+I+ L + G LD+AL              +   +PL   K     
Sbjct: 64  MVSGGCRPNVRTYTVLIQCLASSGNLDAALLSLGREGKIDAAEHLLEKMPLNGCKPNVVN 123

Query: 245 YLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           Y  L+   +   R   A ++   M+D+G  P
Sbjct: 124 YTSLINSLIHYGRVSHALAVFKRMQDEGVMP 154



 Score = 40.0 bits (92), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 63/148 (42%), Gaps = 29/148 (19%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+  LTK KR      + ++M+  G  P+V+T++ L+   A  G+  +   L S+ R
Sbjct: 41  YTMLMSLLTKLKRFRQVGEIFKDMVSGGCRPNVRTYTVLIQCLASSGN--LDAALLSLGR 98

Query: 543 Q---------------NGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAAT 575
           +               NG +P+   +  LI +   Y            + +  +MP++ T
Sbjct: 99  EGKIDAAEHLLEKMPLNGCKPNVVNYTSLINSLIHYGRVSHALAVFKRMQDEGVMPNSIT 158

Query: 576 KELLKKSLWKEGRRKEAAAVEERCEKIN 603
             L+ K L +     +   VE++   I+
Sbjct: 159 YSLMSKGLKRANMLHDLVEVEKKMATID 186


>gi|255539196|ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551364|gb|EEF52850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 117/540 (21%), Positives = 204/540 (37%), Gaps = 97/540 (17%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDIS-------SSKFLNVSVNFMNLMQWYSTSGDLELV 156
           T +AL    A   RN++L+  I  IS        S F+N S+   +L++  S   D  ++
Sbjct: 186 TYNALINACA---RNNDLEKAINLISRMRQDGYPSDFVNYSLIIQSLVR--SNRIDSPIL 240

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
              ++E +     L  +  N ++  +AK G   +A+E    V   G  P + T   +I  
Sbjct: 241 QKLYSEIQCDKLELDVQLSNDIIVGFAKAGDPNKAMEFLGMVQASGLSPRTATLIAVISA 300

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
           L + G++  A  +F  +    +K  ++ Y  L++G+V      +A+ +++EM   G  P 
Sbjct: 301 LGDSGRIIEAEAIFEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPD 360

Query: 277 RAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED--GSDDDEDE--------N 325
                + ++     G  + A   L+EM  +  + N   +     S  D  E         
Sbjct: 361 ECTYSLLIDAYSNAGRWESARIVLKEMEANNIMPNSYVFSRILASYRDRGEWQKSFQVLK 420

Query: 326 DDNNSGVRIA---YGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRH 382
           +  NSGVR     Y V +  +     L + +D +   +   +      W T + C    H
Sbjct: 421 EMKNSGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLIDC----H 476

Query: 383 FKSP--ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP 440
            K+   E A   F  +  + G++  V     M+         + V  L+  +RS G+   
Sbjct: 477 CKAELHERAEELFEEMM-EKGFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPN 535

Query: 441 FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAI 500
             T   +ID YG                                       K  R  DAI
Sbjct: 536 VVTYTTLIDIYG---------------------------------------KSGRFSDAI 556

Query: 501 NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
             LE+M  +G+ P    ++ L+  +A +G  +     F ++R + ++P       LI A+
Sbjct: 557 ECLEDMKSAGLKPSSTMYNALINAYAQKGLSEQAVNAFRLMRADSLKPSLLALNSLINAF 616

Query: 561 ------------CKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
                        KY+  ++L PD  T   L K+L              R +K N VPS+
Sbjct: 617 GEDRRDAEAFSVLKYMKENDLKPDVVTYTTLMKALI-------------RVDKFNKVPSV 663



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 86/190 (45%), Gaps = 8/190 (4%)

Query: 98  FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVL 157
           FS   +T + +     + +R  ++KTL+G++ S   L   V +  L+  Y  SG     +
Sbjct: 497 FSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRFSDAI 556

Query: 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217
               + +      S+  YN +++ YA+ G + +AV  FR +  +   P+     + +  L
Sbjct: 557 ECLEDMKSAGLKPSSTMYNALINAYAQKGLSEQAVNAFRLMRADSLKPS----LLALNSL 612

Query: 218 VN-LGKLDSALEVFSALPLMR---IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           +N  G+     E FS L  M+   +K     Y  L++  + V++F++  S+  EM   G 
Sbjct: 613 INAFGEDRRDAEAFSVLKYMKENDLKPDVVTYTTLMKALIRVDKFNKVPSVYEEMILAGC 672

Query: 274 FPGRAMRVAL 283
            P R  R  L
Sbjct: 673 TPDRKARAML 682



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/177 (19%), Positives = 75/177 (42%)

Query: 99  SHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLS 158
           S ++ T   L    + + R    + ++ ++ ++  +  S  F  ++  Y   G+ +    
Sbjct: 358 SPDECTYSLLIDAYSNAGRWESARIVLKEMEANNIMPNSYVFSRILASYRDRGEWQKSFQ 417

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
              E +          YN+++  + K      A++TF +++ EG  P++ T+  +I+   
Sbjct: 418 VLKEMKNSGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCHC 477

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                + A E+F  +           + I++  F   ER+D+ K+L+  MR  G  P
Sbjct: 478 KAELHERAEELFEEMMEKGFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLP 534


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 119/539 (22%), Positives = 207/539 (38%), Gaps = 66/539 (12%)

Query: 75   ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFL 134
             L  A   ++A  I++ L  N     N  T +AL   L KS R  E    + ++ SS  +
Sbjct: 611  GLCKAGQVEAARDILD-LMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCV 669

Query: 135  NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
              S+ + +L+     +   +  L   +E +       T +YNI++    K+G+  +A+  
Sbjct: 670  PDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITV 729

Query: 195  FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS----KQYLILVE 250
              +++ +G  P+  TY  +I+ L   G L+ A  +   +   R+ R        Y +L+ 
Sbjct: 730  LEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMS-SRVSRCCVPNVVTYSVLIN 788

Query: 251  GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEM----GFIQGANEFLREMLPDK 306
            G   V R DEA+ L+ EM          MR + + +  +     F+ G     ++ +  +
Sbjct: 789  GLCKVGRIDEARELIQEM----------MRKSCDVLPNIITYNSFLDG---LCKQSMMAE 835

Query: 307  RIKNVRYYEDGSDDDEDENDDNNSGVRIAYG-VQLKPWLDPKALANTLDEWSPEVVSLLA 365
              + +R   DGS             +R++   V     +D        DE       ++A
Sbjct: 836  ACELMRSLRDGS-------------LRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIA 882

Query: 366  DAKF--VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVE 423
                  V T  ++   L      E A H         G T DV     ++    +  HV+
Sbjct: 883  GGYVPNVVTYNVLMNGLCKTDKMERA-HAMIESMVDKGVTPDVITYSVLVDAFCKASHVD 941

Query: 424  LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLY 483
                L+  + S G      T   IID    S ++  A + F DD TL   ++  K+   Y
Sbjct: 942  EALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMF-DDMTLKHGLAPDKIT--Y 998

Query: 484  SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI--VQKLFSMV 541
             +L+  L +      A  +L+ M      PD  T++   ++  + G  K+  V +    +
Sbjct: 999  CTLIDGLFRTGWAGQAEVLLDAM------PDPDTYA---FNCCINGLSKLGDVSRALHRM 1049

Query: 542  RQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGR 588
             +  + PD   F +LI   CK             +   NL PD  T   L   L K G+
Sbjct: 1050 LELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQ 1108



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 104/494 (21%), Positives = 172/494 (34%), Gaps = 67/494 (13%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN +++   K+ +    +E F ++++ G  P+  TY  +I+ L   G L+ A  +   +
Sbjct: 218 TYNTIINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDM 277

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
                      Y +L+ G   V R DEA+ L+ EM        ++  V    +    F+ 
Sbjct: 278 SSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTR------KSCDVLPNIITYNSFLD 331

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYG-VQLKPWLDPKALANT 352
           G     ++ +  +  + +R   DGS             +R++   V     +D       
Sbjct: 332 G---LCKQSMTAEACELMRSLRDGS-------------LRVSPDTVTFSTLIDGLCKCGQ 375

Query: 353 LDEWSPEVVSLLADAKF--VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
           +DE       ++A      V T   +   L      E A H         G T DV    
Sbjct: 376 IDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERA-HAMIESMVDKGVTPDVITYS 434

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470
            ++    +   V+    L+  + S G      T   IID    S ++  A + F D    
Sbjct: 435 VLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALK 494

Query: 471 CGPI-SKFKLMLLYSSLLRT---------------------------LTKCKRDFDAINV 502
            G +  K     L   L RT                           L+K      A+ V
Sbjct: 495 HGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVSRALQV 554

Query: 503 LEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
              M+   +VPD  TF+ L+      G+ +    LF  +    ++PD   F  LI   CK
Sbjct: 555 YNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCK 614

Query: 563 ------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP-SLA 609
                        + N  + P+  T   L   L K GR +EA    E       VP S+ 
Sbjct: 615 AGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSIT 674

Query: 610 LRGHIWAVSSADLT 623
               ++A+  A  T
Sbjct: 675 YGSLVYALCRASRT 688



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 119/290 (41%), Gaps = 32/290 (11%)

Query: 339 QLKPWL--DPKALANTLDEWSP--EVVSLLADAKFVWTTRLVCKVLRHFKS-PETAWHFF 393
             KP L  DP++++  L+   P   VV+ L   K      +   +L       E    F+
Sbjct: 39  NCKPLLAEDPRSISEALESLRPGQSVVAALRGCKGRLHPSVAAAILAQLDGNAELGTQFY 98

Query: 394 CWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGI 453
            W A  PG+ H +++  K L +L + G      + I   RS   RLP    R   + +  
Sbjct: 99  DWAAALPGFKHTIFSFNKYLNLLVKSGSPA---KAIDLFRS---RLP---PRCRPNHFTY 149

Query: 454 SKKADAALKAFHD-DRTL---CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLE-EMIF 508
           S    A  KA  D +RTL       S  + +  Y+ +L++L +      A+ +   EM  
Sbjct: 150 STLLRATYKAGGDVERTLGFFRRIRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMAR 209

Query: 509 SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY----- 563
            G+ P + T++ ++       +     +LF  + + G  PD   +  LI + CK      
Sbjct: 210 DGVAPTIVTYNTIINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEE 269

Query: 564 -------LSNSNLMPDAATKELLKKSLWKEGRRKEA-AAVEERCEKINDV 605
                  +S+ + +P+  T  +L   L K GR  EA   ++E   K  DV
Sbjct: 270 ARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDV 319



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 103/502 (20%), Positives = 190/502 (37%), Gaps = 75/502 (14%)

Query: 85  ALSIMEALKSNP-NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL 143
           A  +M +L+      S +  T   L   L K  +  E  ++  D+ +  ++   + +  L
Sbjct: 342 ACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNAL 401

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
           +     +  +E   +       +       +Y++++  + K  +  EA+E    +   G 
Sbjct: 402 VNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGC 461

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK-QYLILVEGFVGVERFDEAK 262
            PN  T+  +I+ L    +   A ++F  + L       K  Y  L++G     R  +A+
Sbjct: 462 TPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAE 521

Query: 263 SLLNEMRDDGKFPGRAMRVALERMQEMGFIQGA----NEFLR-EMLPDKRIKNVRYYEDG 317
           +LL+ M D   +   A    +  + ++G +  A    N  L  E++PDK   N+      
Sbjct: 522 ALLDAMPDPDTY---AFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILI---- 574

Query: 318 SDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSL------LADAKFVW 371
                       +G   A   +    L  + +A  L    P+V++       L  A  V 
Sbjct: 575 ------------AGACKAGNFEQASALFEEMVAKNL---QPDVMTFGALIDGLCKAGQVE 619

Query: 372 TTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAK 431
             R +  ++ +   P                  +V     ++  L + G +E   + + +
Sbjct: 620 AARDILDLMGNLGVPP-----------------NVVTYNALVHGLCKSGRIEEACQFLEE 662

Query: 432 LRSDGMRLPFSTI--RLIIDFYGISKKADA-----ALKAFHDDRTLCGPISKFKLMLLYS 484
           + S G  +P S     L+      S+  DA      LK+F  D             + Y+
Sbjct: 663 MVSSGC-VPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPD----------TVTYN 711

Query: 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF----SM 540
            L+  L K  +   AI VLEEM+  G  PDV T++ L+      GD +  ++L     S 
Sbjct: 712 ILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSR 771

Query: 541 VRQNGVEPDAYMFKVLIQAYCK 562
           V +  V P+   + VLI   CK
Sbjct: 772 VSRCCV-PNVVTYSVLINGLCK 792



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 104/534 (19%), Positives = 190/534 (35%), Gaps = 78/534 (14%)

Query: 108 LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA 167
           L ++    +    L+   G+++        V +  ++     S +L   +  + E  +R 
Sbjct: 187 LQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVERG 246

Query: 168 KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227
                 +YN ++    K G   EA      +     +PN  TY+V+I  L  +G++D A 
Sbjct: 247 HHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEAR 306

Query: 228 EVFSALPLMRIKRTSK--QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA--- 282
           E+   +             Y   ++G        EA  L+  +RD       ++RV+   
Sbjct: 307 ELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDG------SLRVSPDT 360

Query: 283 ------LERMQEMGFIQGANEFLREMLPDKRIKNVRYY-------------EDGSDDDED 323
                 ++ + + G I  A     +M+    + NV  Y             E      E 
Sbjct: 361 VTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIES 420

Query: 324 ENDDNNSGVRIAYGVQLKPWLDPKALANTLD--------EWSPEVVSLLADAKFVWTTRL 375
             D   +   I Y V +  +     +   L+          +P VV+      F      
Sbjct: 421 MVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVT------FNSIIDG 474

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           +CK  R  +    A+  F  +A + G   D      ++  L R G     + L+     D
Sbjct: 475 LCKSDRSGE----AFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALL-----D 525

Query: 436 GMRLPFSTIRLIIDFYGISKKADA--ALKAFHDDRTLCGPISKFKLM---LLYSSLLRTL 490
            M  P  T        G+SK  D   AL+ ++  R L     + +L+   + ++ L+   
Sbjct: 526 AMPDP-DTYAFNCCINGLSKLGDVSRALQVYN--RML-----ELELVPDKVTFNILIAGA 577

Query: 491 TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA 550
            K      A  + EEM+   + PDV TF  L+      G  +  + +  ++   GV P+ 
Sbjct: 578 CKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNV 637

Query: 551 YMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
             +  L+   CK             + +S  +PD+ T   L  +L +  R  +A
Sbjct: 638 VTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDA 691



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 95/475 (20%), Positives = 181/475 (38%), Gaps = 54/475 (11%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           +V F  L+      G ++   S +++      + +  +YN +++   K  K   A     
Sbjct: 360 TVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIE 419

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
            ++D+G  P+  TY+V+++      ++D ALE+   +           +  +++G    +
Sbjct: 420 SMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSD 479

Query: 257 RFDEAKSLLNEMR-DDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
           R  EA  + ++M    G  P +     L + +   G   G  E L + +PD       Y 
Sbjct: 480 RSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGR-AGQAEALLDAMPDPDT----YA 534

Query: 315 EDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTR 374
            +   +   +  D +  +++ Y   L+  L P  +   +         L+A A       
Sbjct: 535 FNCCINGLSKLGDVSRALQV-YNRMLELELVPDKVTFNI---------LIAGA------- 577

Query: 375 LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
             CK   +F+     +        QP    DV     ++  L + G VE    ++  + +
Sbjct: 578 --CKA-GNFEQASALFEEMVAKNLQP----DVMTFGALIDGLCKAGQVEAARDILDLMGN 630

Query: 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKC 493
            G+     T   ++     S + + A +   +   + C P S     + Y SL+  L + 
Sbjct: 631 LGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDS-----ITYGSLVYALCRA 685

Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD-EKIVQKLFSMVRQNGVEPDAYM 552
            R  DA+ ++ E+   G  PD  T++ L+      G  E+ +  L  MV + G  PD   
Sbjct: 686 SRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGK-GHHPDVVT 744

Query: 553 FKVLIQAYCKYLS---------------NSNLMPDAATKELLKKSLWKEGRRKEA 592
           +  LI + CK                  +   +P+  T  +L   L K GR  EA
Sbjct: 745 YNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEA 799



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/271 (18%), Positives = 107/271 (39%), Gaps = 38/271 (14%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNP 96
           L++ +  A +   ++++   + D+ + P ++T+     A   A   D AL ++  + S  
Sbjct: 401 LVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASR- 459

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDIS--------------------------- 129
             + N  T +++   L KS R+ E   +  D++                           
Sbjct: 460 GCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQ 519

Query: 130 SSKFLNV-----SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK 184
           +   L+      +  F   +   S  GD+   L  +N   +   +    ++NI+++   K
Sbjct: 520 AEALLDAMPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACK 579

Query: 185 TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQ 244
            G   +A   F +++ +   P+  T+  +I+ L   G++++A ++   +  + +      
Sbjct: 580 AGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVT 639

Query: 245 YLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           Y  LV G     R +EA   L EM   G  P
Sbjct: 640 YNALVHGLCKSGRIEEACQFLEEMVSSGCVP 670



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 93/221 (42%), Gaps = 27/221 (12%)

Query: 427 RLIAKLRSDGMRLPFSTIRL--IIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS 484
            L+  LR   +R+   T+    +ID      + D A   F DD    G +     ++ Y+
Sbjct: 344 ELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVF-DDMIAGGYVPN---VITYN 399

Query: 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF--ALQGDEKIVQKLFSMVR 542
           +L+  L K  +   A  ++E M+  G+ PDV T+S L+  F  A + DE +  +L   + 
Sbjct: 400 ALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEAL--ELLHGMA 457

Query: 543 QNGVEPDAYMFKVLIQAYCKYLSNS-------------NLMPDAATKELLKKSLWKEGRR 589
             G  P+   F  +I   CK   +               L+PD  T   L   L++ GR 
Sbjct: 458 SRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRA 517

Query: 590 KEAAAVEERCEKINDVPSLALRGHIWAVSS-ADLTRVHSIY 629
            +A A+    + + D  + A    I  +S   D++R   +Y
Sbjct: 518 GQAEALL---DAMPDPDTYAFNCCINGLSKLGDVSRALQVY 555


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 88/413 (21%), Positives = 173/413 (41%), Gaps = 40/413 (9%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++N+++    +  +   A+     +   G +P+ +T+T +++  +  G LD AL +   +
Sbjct: 191 TFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQM 250

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD-DGKFPGR-AMRVALERMQEMGF 291
                  ++    ++V GF    R ++A + + EM + DG FP +      +  + + G 
Sbjct: 251 VEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGH 310

Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGV-RIAYGVQLKPWLD----- 345
           ++ A E +  ML           ++G D D    +   SG+ ++    +   +LD     
Sbjct: 311 VKHAIEIMDVML-----------QEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITR 359

Query: 346 ---PKALA-NTLD---------EWSPEVVSLLADAKF---VWTTRLVCKVLRHFKSPETA 389
              P  +  NTL          E + E+  +L        V T   + + L   ++   A
Sbjct: 360 DCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVA 419

Query: 390 WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID 449
              F  +  + G   D +    ++  L   G ++    ++ ++   G      T   +ID
Sbjct: 420 MELFEEMRSK-GCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLID 478

Query: 450 FYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS 509
            +  + K   A + F D+  + G +S+  +   Y++L+  L K +R  DA  ++++MI  
Sbjct: 479 GFCKANKIREAEEIF-DEMEVHG-VSRNSVT--YNTLIDGLCKSRRVEDASQLMDQMIME 534

Query: 510 GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           G  PD  T++ L+ HF   GD K    +   +  NG EPD   +  LI   CK
Sbjct: 535 GQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCK 587



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 79/179 (44%)

Query: 99  SHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLS 158
           S N  T + L + L K  +  E   L   ++S   L     F +L+Q    + +  + + 
Sbjct: 362 SPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAME 421

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
            + E R +       +YN+++      GK  EA+   +Q+   G   +  TY  +I+   
Sbjct: 422 LFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFC 481

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR 277
              K+  A E+F  + +  + R S  Y  L++G     R ++A  L+++M  +G+ P +
Sbjct: 482 KANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDK 540



 Score = 46.2 bits (108), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 100/262 (38%), Gaps = 47/262 (17%)

Query: 380 LRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
           LR       A   F   + +P ++ +    E++L  L R G  + + +++  +++ G  +
Sbjct: 57  LRSQADDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMRKILEDMKNSGCEM 116

Query: 440 PFSTIRLIIDFYGISKKADAALKAFH---DDRTLCGPISKFKLMLL-------------- 482
             S   ++I+ Y   +  D  L   H   DD  L  P + F   +L              
Sbjct: 117 GTSPFLILIESYAQFELQDEILGVVHWMIDDFGL-KPDTHFYNRMLNLLVDGNNLKLVEI 175

Query: 483 ----------------YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
                           ++ L++ L +  +   AI +LE+M   G+VPD +TF+ +M  + 
Sbjct: 176 AHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYI 235

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSN-LMPDA 573
            +GD     ++   + + G         V++  +CK             +SN +   PD 
Sbjct: 236 EEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQ 295

Query: 574 ATKELLKKSLWKEGRRKEAAAV 595
            T   L   L K G  K A  +
Sbjct: 296 YTFNTLVNGLCKAGHVKHAIEI 317



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 99/501 (19%), Positives = 183/501 (36%), Gaps = 39/501 (7%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSK-FLNVSVNFM 141
           D AL I E +      S +  +++ +     K  R  +    I ++S+   F      F 
Sbjct: 241 DGALRIREQMVEF-GCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFN 299

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            L+     +G ++  +   +   Q        +YN V+S   K G+  EAVE   Q+I  
Sbjct: 300 TLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITR 359

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
              PN+ TY  +I  L    +++ A E+   L    I      +  L++G         A
Sbjct: 360 DCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVA 419

Query: 262 KSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREM--------------LPDK 306
             L  EMR  G  P      + ++ +   G +  A   L++M              L D 
Sbjct: 420 MELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDG 479

Query: 307 RIK--NVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLL 364
             K   +R  E+  D+ E      NS   + Y   +      + + +        ++   
Sbjct: 480 FCKANKIREAEEIFDEMEVHGVSRNS---VTYNTLIDGLCKSRRVEDASQLMDQMIMEGQ 536

Query: 365 ADAKFVWTTRLV--CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHV 422
              KF + + L   C+     K+ +             G   D+     +++ L + G V
Sbjct: 537 KPDKFTYNSLLTHFCRGGDIKKAADIV-----QAMTSNGCEPDIVTYGTLISGLCKAGRV 591

Query: 423 ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD--DRTLCGPISKFKLM 480
           E+  +L+  ++  G+ L       +I      +K   A+  F +  ++    P +     
Sbjct: 592 EVASKLLRSIQMKGIALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAAPDA----- 646

Query: 481 LLYSSLLRTLTKCKRDF-DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           + Y  + R L        +A++ L E++  G VP+  +   L         E+ + KL +
Sbjct: 647 VSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVN 706

Query: 540 MVRQNG--VEPDAYMFKVLIQ 558
           MV Q     E +  M K L++
Sbjct: 707 MVMQKARFSEEEVSMVKGLLK 727



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/167 (19%), Positives = 70/167 (41%), Gaps = 1/167 (0%)

Query: 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
           ST + L   L ++ +      ++ D+ S   +     F  +MQ Y   GDL+  L    +
Sbjct: 190 STFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQ 249

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE-GAIPNSRTYTVMIEHLVNLG 221
             +     S  S N+++  + K G+  +A+   +++ ++ G  P+  T+  ++  L   G
Sbjct: 250 MVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAG 309

Query: 222 KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
            +  A+E+   +           Y  ++ G   +    EA   L++M
Sbjct: 310 HVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQM 356



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 94/242 (38%), Gaps = 44/242 (18%)

Query: 395 WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF---- 450
           W+    G   D +   +ML +L    +++LV+   AK+   G++   ST  ++I      
Sbjct: 143 WMIDDFGLKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKALCRA 202

Query: 451 ---------------YGI---SKKADAALKAFHDDRTLCGPISKFKLMLLYSS------- 485
                          YG+    K     ++ + ++  L G +   + M+ +         
Sbjct: 203 HQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSV 262

Query: 486 --LLRTLTKCKRDFDAINVLEEMIFS-GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
             ++    K  R  DA+N ++EM    G  PD  TF+ L+      G  K   ++  ++ 
Sbjct: 263 NVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVML 322

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
           Q G +PD Y +  +I   CK             +   +  P+  T   L  +L KE + +
Sbjct: 323 QEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVE 382

Query: 591 EA 592
           EA
Sbjct: 383 EA 384


>gi|297805886|ref|XP_002870827.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316663|gb|EFH47086.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 582

 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 98/241 (40%), Gaps = 34/241 (14%)

Query: 383 FKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFS 442
           +  P  +W F+ W    P   H + +  KM+ IL +H H +   +L+ KL    +     
Sbjct: 57  YGGPSLSWSFYSWTDSLPSCKHSLQSSWKMILILTKHNHFKTAHQLLDKLSQRELLSSPL 116

Query: 443 TIRLIID------------------FYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS 484
            +R ++                   FY  S   + ++  F    + CG     +     +
Sbjct: 117 VLRSLVGGVSEDPEVLSHVFSWLMIFYAKSGMINDSIAVFEQIMS-CGLKPHLQAC---T 172

Query: 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544
            LL +L K +       + ++M+  G+V ++  ++ L++  +  GD +  +KL S + + 
Sbjct: 173 VLLNSLVKERLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDSEKAEKLLSEMEEK 232

Query: 545 GVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           GV PD + +  LI  YCK             +  S + PD  T   L     +EGR +EA
Sbjct: 233 GVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPDIVTYNSLIHGFSREGRMREA 292

Query: 593 A 593
            
Sbjct: 293 T 293



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 112/271 (41%), Gaps = 12/271 (4%)

Query: 41  QLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHAL--------RSAPNADSALSIMEAL 92
           QL+D +      +S   L SL+     DP +++H          +S    DS +++ E +
Sbjct: 101 QLLDKLSQRELLSSPLVLRSLVGGVSEDPEVLSHVFSWLMIFYAKSGMINDS-IAVFEQI 159

Query: 93  KSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD 152
            S     H Q+    L +++ +   +   K     +      N+ V +  L+   S SGD
Sbjct: 160 MSCGLKPHLQACTVLLNSLVKERLTDTVWKIFKKMVKLGVVANIHV-YNVLVHACSKSGD 218

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
            E      +E  ++       +YN ++SVY K   +FEA+    ++   G  P+  TY  
Sbjct: 219 SEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPDIVTYNS 278

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +I      G++  A  +F  +  + +      Y  L++G+  +   DEA  L   M   G
Sbjct: 279 LIHGFSREGRMREATRLFRKIKGV-VMANHVTYTTLIDGYCRMNDIDEALRLREVMESRG 337

Query: 273 KFPGRAM-RVALERMQEMGFIQGANEFLREM 302
             PG       L ++ E G I+ AN  L EM
Sbjct: 338 FCPGVVTYNSILRKLCEDGRIREANRLLTEM 368



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 96/233 (41%), Gaps = 26/233 (11%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM--RLPFSTIRLIIDFYGISKK 456
           + G   D+     ++   +R G +    RL  K++   M   + ++T+   ID Y     
Sbjct: 266 RSGVAPDIVTYNSLIHGFSREGRMREATRLFRKIKGVVMANHVTYTTL---IDGYCRMND 322

Query: 457 ADAALK--AFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
            D AL+     + R  C  +      + Y+S+LR L +  R  +A  +L EM    I PD
Sbjct: 323 IDEALRLREVMESRGFCPGV------VTYNSILRKLCEDGRIREANRLLTEMSVKKIEPD 376

Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSN------ 568
             T + L+  +    D     K+   + ++G++ D Y +K LI  +CK L   N      
Sbjct: 377 NITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELDNAKEELF 436

Query: 569 ------LMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLAL-RGHI 614
                 L P  +    L    + + ++ E   + E  EK    P +AL RG I
Sbjct: 437 SMIEKGLSPGYSAYSWLVDGFYNQNKQDEITKLPEEFEKRGLCPDVALYRGLI 489



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 13/128 (10%)

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
           F  +  Y++L+    K    F+A++V + M  SG+ PD+ T++ L++ F+ +G  +   +
Sbjct: 235 FPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPDIVTYNSLIHGFSREGRMREATR 294

Query: 537 LFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLW 584
           LF  ++   V  +   +  LI  YC+             + +    P   T   + + L 
Sbjct: 295 LFRKIK-GVVMANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFCPGVVTYNSILRKLC 353

Query: 585 KEGRRKEA 592
           ++GR +EA
Sbjct: 354 EDGRIREA 361



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 82/208 (39%), Gaps = 18/208 (8%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G+   V     +L  L   G +   +RL+ ++    +     T   +I+ Y    K +  
Sbjct: 337 GFCPGVVTYNSILRKLCEDGRIREANRLLTEMSVKKIEPDNITCNTLINAYC---KIEDM 393

Query: 461 LKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           + A    + +    S  KL M  Y +L+    K     +A   L  MI  G+ P    +S
Sbjct: 394 VSAVKVKKKMIE--SGLKLDMYSYKALIHGFCKVLELDNAKEELFSMIEKGLSPGYSAYS 451

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNS 567
            L+  F  Q  +  + KL     + G+ PD  +++ LI+  CK             +   
Sbjct: 452 WLVDGFYNQNKQDEITKLPEEFEKRGLCPDVALYRGLIRRICKLEQVDYAKVLFESMEKK 511

Query: 568 NLMPDAATKELLKKSLWKEGRRKEAAAV 595
            LM D+     +  + W+ G+  +A+A+
Sbjct: 512 GLMGDSVIYTTMAYAYWRTGKVTDASAL 539


>gi|357120648|ref|XP_003562037.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g23020-like [Brachypodium distachyon]
          Length = 807

 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 100/476 (21%), Positives = 186/476 (39%), Gaps = 96/476 (20%)

Query: 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE---LVLST 159
           +T   L  V  K  R       +GD+     +   V    ++Q Y  +G+ E   L    
Sbjct: 177 ATYGTLIDVYCKGGRERAALLWLGDMCKRGLVPDEVTMSTVLQAYKKAGEYEKAELFFRR 236

Query: 160 WNEYRQRAK----LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
           W+    + K      +  +YN ++  Y K G+  +  + F Q++ EG +P+  T+  +I 
Sbjct: 237 WSSESHKRKEGHRCYNLYTYNTLIDTYGKAGQLEKVSDAFSQMLREGVVPDIFTFNTLIH 296

Query: 216 ------HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
                  +  +  L   +E F  LP       ++ Y IL+  +  ++  D A+    +M+
Sbjct: 297 VWGKHHRMEQVSSLVRMMEEFQCLP------DTRTYNILISLYREIDEIDVAEFYFCKMK 350

Query: 270 DDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDN 328
            +   P   + R  L      G +  A   ++EM                         +
Sbjct: 351 AENLVPDTVSCRTLLYGYSTRGMVTKAEALIKEM-------------------------D 385

Query: 329 NSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPET 388
            SG+ I                   DE++   ++ +    +V T  L           E 
Sbjct: 386 ESGLVI-------------------DEYTQSALTRM----YVNTGML-----------ER 411

Query: 389 AWHFFCWVAYQPG---YTHDVYAL-EKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI 444
           +W +F    +Q G   ++ ++ A  EK   ILA    +  ++R +         L  S  
Sbjct: 412 SWRWFERFCHQMGSECFSANIDAFGEKGCIILAEKAFMCCLERKM---------LCVSVC 462

Query: 445 RLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLE 504
            ++I  YG+ +K D A +   D     G +  +   L YSSL++ L+  K    A+  L 
Sbjct: 463 NVMIKAYGLVEKLDEACEVA-DCMERYGVLPDY---LTYSSLIQLLSTAKLPEKALYYLR 518

Query: 505 EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
           +M  + +  D   +S ++  FA + +  +V+ LF  +  +G+  DAY++ +LI AY
Sbjct: 519 KMHAAELPIDCVPYSVIISSFAKKDNLHMVECLFREMATSGICADAYVYSILIDAY 574


>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 528

 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 116/267 (43%), Gaps = 12/267 (4%)

Query: 51  RSNSSNSLSSLLNDRL-LDPFIVTHALR------SAPNADSALSIMEALKSNPNFSHNQS 103
           R+  + S    L D+   D  + T+ +R      + P A+   + M+     PN      
Sbjct: 227 RATEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTI 286

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
            + AL     +  R H++   + D+        S+ F NL++ +  +G  E VL  +N+ 
Sbjct: 287 VIDALCRC-GQITRAHDVFAEMLDVGCEP---NSITFNNLLRVHVKAGRTEKVLQVYNQM 342

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
           ++      T +YN ++  + K G   EA++    ++ +G  PN+ T+  +   +  L  +
Sbjct: 343 KRMGCPPDTVTYNFLIESHCKDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLRDV 402

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
           + A  +++ +  ++ K  +  Y IL+  FV  +  D    L  EM +D   P       L
Sbjct: 403 NGAHRLYAKMKELKCKANTVTYNILMRMFVDTKSTDMVLKLKKEMDEDDVEPNVNTYCVL 462

Query: 284 ERMQ-EMGFIQGANEFLREMLPDKRIK 309
             M   MG    A +F REM+ +K +K
Sbjct: 463 IAMYCGMGHWNNAYKFFREMVEEKCLK 489



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 87/190 (45%), Gaps = 13/190 (6%)

Query: 377 CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
           C  +RH      A  FF W   +PG+TH      +M+ +  +  + +L  ++I  +++  
Sbjct: 113 CAAVRHGIPFFQALSFFNWATSRPGFTHHPEPYNEMIDLAGKVRNFDLGWQVIDLMKARN 172

Query: 437 MRLPFSTIRLIIDFYGISKKADAALKAFH--DDRTLCGPISKFKLMLLYSSLLRT--LTK 492
           + +   T  ++I  Y  +  A  A+ AF+  +D   C P  K    +L S L R    T+
Sbjct: 173 VEISIETFSILIRRYVRAGLASEAVHAFNRMEDYN-CKP-DKIAFSILISILCRKRRATE 230

Query: 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYM 552
            +  FD++            PDV  ++ L+  +   G+    +++F+ ++  G  P+ Y 
Sbjct: 231 AQSFFDSLK-------DKFEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYT 283

Query: 553 FKVLIQAYCK 562
           + ++I A C+
Sbjct: 284 YTIVIDALCR 293



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 7/111 (6%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ ++  L +C +   A +V  EM+  G  P+  TF+ L+      G  + V ++++ ++
Sbjct: 284 YTIVIDALCRCGQITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMK 343

Query: 543 QNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
           + G  PD   +  LI+++CK   + NL  D A K L   S+ K+G    A+
Sbjct: 344 RMGCPPDTVTYNFLIESHCK---DGNL--DEALKVL--NSMVKKGCSPNAS 387


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 128/592 (21%), Positives = 223/592 (37%), Gaps = 123/592 (20%)

Query: 82  ADSALSIMEALKSNPNFSHNQS---TLHALATVLAKSQRNHEL----------------- 121
           AD AL+    LK +P   H+ S   T  A + +L KSQ N EL                 
Sbjct: 25  ADKALTF---LKRHPYQLHHLSANFTPEAASNLLLKSQNNQELILKFLTWANPHQFFTLR 81

Query: 122 ------------------KTLIGDISSSKF--LNVSVNFMNLMQWY----STSGDLELVL 157
                             +TL  D+++      + S+ F +L + Y    STS   +LV+
Sbjct: 82  CKCITLHILTRFKLYKTAQTLAEDVAAKTLDDEDASLVFRSLQETYDLCNSTSSVFDLVV 141

Query: 158 STWNEYRQRAKLLS-------------TESYNIVMSVYAKTGKNFEAVE-TFRQVIDEGA 203
            +++      K LS               SYN V+    ++ +N    E  F++++    
Sbjct: 142 KSYSRLCLIDKALSIVHLSQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQV 201

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
            PN  TY ++I      G LD AL  F  +           Y  L++G+  + + D+   
Sbjct: 202 SPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFE 261

Query: 264 LLNEMRDDGKFPGR-AMRVALE------RMQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
           LL  M   G  P   +  V +       RM+E+ F+      L EM  +KR         
Sbjct: 262 LLRSMALKGLEPNLISYNVVINGLCREGRMKEISFV------LTEM--NKR--------- 304

Query: 317 GSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL- 375
           G   DE           + Y   +K +         L   +  +   L+ +   +T+ + 
Sbjct: 305 GYSLDE-----------VTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIH 353

Query: 376 -VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
            +CK     ++ E     F       G   +      ++   ++ G++    R++ ++  
Sbjct: 354 SMCKAGNMNRATE-----FLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMID 408

Query: 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTK 492
           +G      T   +I+ + I+ K   A+    D  ++ L   +      + YS++L    +
Sbjct: 409 NGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDV------VSYSTVLSGFCR 462

Query: 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYM 552
                +A+ V  +M+  GI PD  T+S L+  F  Q   K    LF  + + G+ PD + 
Sbjct: 463 SYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFT 522

Query: 553 FKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           +  LI AYC              +    ++PD  T  +L   L K+ R +EA
Sbjct: 523 YTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREA 574



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 13/129 (10%)

Query: 480 MLLYSSLLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF 538
           +L Y+++L    + KR+   A NV +EM+ S + P+V T++ L+  F L G+  +  + F
Sbjct: 169 VLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFF 228

Query: 539 SMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKE 586
             + + G  P+   +  LI  YCK             ++   L P+  +  ++   L +E
Sbjct: 229 DRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCRE 288

Query: 587 GRRKEAAAV 595
           GR KE + V
Sbjct: 289 GRMKEISFV 297



 Score = 45.8 bits (107), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 38/214 (17%), Positives = 92/214 (42%), Gaps = 6/214 (2%)

Query: 67  LDPFIVT-----HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHEL 121
           L P ++T     H++  A N + A   ++ ++       N+ T   L    ++    +E 
Sbjct: 341 LSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVR-GLCPNERTYTTLVDGFSQKGYMNEA 399

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
             ++ ++  + F    V +  L+  +  +G +   ++   + +++       SY+ V+S 
Sbjct: 400 YRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSG 459

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
           + ++    EA+   R+++ +G  P++ TY+ +I+      +   A ++F  +  + +   
Sbjct: 460 FCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPD 519

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              Y  L+  +       +A  L NEM + G  P
Sbjct: 520 EFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLP 553



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 61/148 (41%), Gaps = 15/148 (10%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  L+  Y   GDL+  +   NE  ++  L    +Y+++++   K  +  EA     ++ 
Sbjct: 523 YTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLF 582

Query: 200 DEGAIPNSRTYTVMIEHLVNL---------------GKLDSALEVFSALPLMRIKRTSKQ 244
            E ++P+  TY  +IE+  N+               G +  A +VF ++     K     
Sbjct: 583 YEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTA 642

Query: 245 YLILVEGFVGVERFDEAKSLLNEMRDDG 272
           Y +++ G        +A SL  EM   G
Sbjct: 643 YNVMIHGHCRGGDIRKAYSLYKEMVKSG 670


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 106/260 (40%), Gaps = 26/260 (10%)

Query: 365 ADAKFVWTTRLV---CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGH 421
             A FV  T L+   CKV    K  E A  F   +  + G+  DVY    ++  L     
Sbjct: 7   CSADFVTYTSLIQGLCKV----KRLEQALIFLGKMVSK-GFHPDVYTYTAVIHALCVENR 61

Query: 422 VELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLML 481
           +    + + ++ +  +     T  ++ID      + D A+      R  C P +     +
Sbjct: 62  LHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTA-----V 116

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
            Y+SL+  L K +R  +A ++LEEM++SG +PD+ T++ L+  F          ++F  +
Sbjct: 117 TYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQL 176

Query: 542 RQNGVEPDAYMFKVLIQAYCK-------------YLSNSNLMPDAATKELLKKSLWKEGR 588
              G  PD   +  LI   CK              + + + MP+  T   L     + G+
Sbjct: 177 VARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGK 236

Query: 589 RKEAAAVEERCEKINDVPSL 608
             EA  + ER  +    P +
Sbjct: 237 MDEAMNLLERMAETGSSPDV 256



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 97/220 (44%), Gaps = 8/220 (3%)

Query: 62  LNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQ 116
           + +R L P +VT+      L      D A++++  ++          T ++L + L K++
Sbjct: 72  MANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK--CVPTAVTYNSLISGLCKAE 129

Query: 117 RNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYN 176
           R  E   L+ ++  S  +     +  L+  +  S   +  L  + +   R       +Y+
Sbjct: 130 RASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYS 189

Query: 177 IVMSVYAKTGKNFEAVETFRQVIDEGA-IPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
            ++    K G+  EA++ F ++I  G+ +PN+ TY  +I     +GK+D A+ +   +  
Sbjct: 190 CLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAE 249

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                    Y  L+ GF  + R D+A  LLN+M   G  P
Sbjct: 250 TGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTP 289



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 75/178 (42%), Gaps = 5/178 (2%)

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
           +P+     + +HAL        R HE +  + ++++       V +  L+      G ++
Sbjct: 43  HPDVYTYTAVIHALCV----ENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVD 98

Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
             ++  ++ R++  + +  +YN ++S   K  +  EA +   +++  G IP+  TYT +I
Sbjct: 99  EAVALLSKMRKKC-VPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLI 157

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
                  K D AL VF  L     +     Y  L++G     R  EA  L   M   G
Sbjct: 158 TGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSG 215



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/240 (20%), Positives = 102/240 (42%), Gaps = 8/240 (3%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNP 96
           LID +    R + + +L S +  + + P  VT+      L  A  A  A  ++E +  + 
Sbjct: 87  LIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLCKAERASEAYDLLEEMVYSG 145

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
               +  T   L T   KS+++ +   +   + +  F    V +  L+      G L+  
Sbjct: 146 CIP-DIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEA 204

Query: 157 LSTWNEYRQRAKLL-STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
           +  +    +    + +T +YN ++S + + GK  EA+    ++ + G+ P+  TYT ++ 
Sbjct: 205 IDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMN 264

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               L +LD A ++ + +    +      +  L++G     R  +A  +L EMR     P
Sbjct: 265 GFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSP 324



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 11/140 (7%)

Query: 136 VSVNFM--NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE 193
           VS N M   L +   +S  +ELV     E R+R        Y  V+    +  K  EA  
Sbjct: 360 VSFNIMIRGLCKVNRSSEAMELV----EEARRRRCNPDVVMYTTVIDGLCREKKVDEACR 415

Query: 194 TFRQVIDE-GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
            +R++++E G +PNS TY+ ++  L N G LD A        +  I      Y +L++ F
Sbjct: 416 VYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRARGYIEKGCVPNI----GTYNLLIDAF 471

Query: 253 VGVERFDEAKSLLNEMRDDG 272
               R ++A+ LL++M   G
Sbjct: 472 RKANRDEDARELLDDMVQRG 491



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 38/190 (20%), Positives = 79/190 (41%), Gaps = 2/190 (1%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD-ISSSKFLNVSVNF 140
           +D AL + E L +   F  +  T   L   L K  R  E   L G  I S   +  +V +
Sbjct: 166 SDDALRVFEQLVAR-GFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTY 224

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
            +L+  +   G ++  ++      +        +Y  +M+ + K  +  +A +   Q+  
Sbjct: 225 NSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTR 284

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
           +G  P+  T+T +++ L    +L  A+ +   +       T   Y  +++G+    + +E
Sbjct: 285 KGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEE 344

Query: 261 AKSLLNEMRD 270
           A+  + E  D
Sbjct: 345 ARKFMLEEMD 354



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 77/195 (39%), Gaps = 18/195 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D++    ++T   +    +   R+  +L + G R    T   +ID      +   A
Sbjct: 145 GCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEA 204

Query: 461 LKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
           +  F        C P +     + Y+SL+    +  +  +A+N+LE M  +G  PDV T+
Sbjct: 205 IDLFGRMIKSGSCMPNT-----VTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTY 259

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKEL 578
           + LM  F           L + + + G+ PD   F  L+   C+     N + DA     
Sbjct: 260 TTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCR----ENRLSDAV---- 311

Query: 579 LKKSLWKEGRRKEAA 593
               +  E RRK  +
Sbjct: 312 ---HILGEMRRKSCS 323



 Score = 40.4 bits (93), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 38/194 (19%), Positives = 79/194 (40%), Gaps = 4/194 (2%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A++++E +    + S +  T   L     K  R  +   L+  ++        V F +
Sbjct: 238 DEAMNLLERMAETGS-SPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTS 296

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           LM        L   +    E R+++   +  +YN ++  Y +  +  EA +   + +D  
Sbjct: 297 LMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMD-- 354

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             PN  ++ +MI  L  + +   A+E+       R       Y  +++G    ++ DEA 
Sbjct: 355 CPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEAC 414

Query: 263 SLLNEMRDD-GKFP 275
            +  +M ++ G  P
Sbjct: 415 RVYRKMLEEPGCLP 428


>gi|168063579|ref|XP_001783748.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664754|gb|EDQ51462.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 166

 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 72/156 (46%)

Query: 68  DPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD 127
           +PFIV   L+S   A  A      LKS   ++HN  T   +  +  K+     +++++ +
Sbjct: 11  NPFIVCGVLKSNIRAKKAWEFFNWLKSQEGYTHNVYTYTTMIDLFGKAGNYAAMESVVEE 70

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           +         V +  L+ WY  + DL  V   W +  +++   +  +Y   +    K   
Sbjct: 71  MCQEGHSLSVVTYTILIHWYRHAKDLNGVRRVWKQMAEKSVKANVVTYTAYIDALVKGNC 130

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
           + EA+E FR++ +    PN  TYTV+I  LV  GKL
Sbjct: 131 HLEAMEVFREMQESRCRPNIYTYTVLIHSLVEAGKL 166



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 8/161 (4%)

Query: 371 WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIA 430
           W   +VC VL+     + AW FF W+  Q GYTH+VY    M+ +  + G+   ++ ++ 
Sbjct: 10  WNPFIVCGVLKSNIRAKKAWEFFNWLKSQEGYTHNVYTYTTMIDLFGKAGNYAAMESVVE 69

Query: 431 KLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD--DRTLCGPISKFKLMLLYSSLLR 488
           ++  +G  L   T  ++I +Y  +K  +   + +    ++++   +      + Y++ + 
Sbjct: 70  EMCQEGHSLSVVTYTILIHWYRHAKDLNGVRRVWKQMAEKSVKANV------VTYTAYID 123

Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
            L K     +A+ V  EM  S   P++ T++ L++     G
Sbjct: 124 ALVKGNCHLEAMEVFREMQESRCRPNIYTYTVLIHSLVEAG 164


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 105/547 (19%), Positives = 197/547 (36%), Gaps = 70/547 (12%)

Query: 80  PNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
           P A +  + M+   + PN    + T + L     K  + H    L+ ++  S      V 
Sbjct: 143 PEATTYFAKMKKKGTVPN----EWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVT 198

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  ++  +     ++     + +  +   + +  +YN ++S   + G   EA E   ++ 
Sbjct: 199 YSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMR 258

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           + G  P+  +Y  ++  L   GK+D AL+VF              Y  L+ G     R D
Sbjct: 259 ERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLD 318

Query: 260 EAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGS 318
           EA  L  +MR++   P      AL + + +   +Q A + L  M                
Sbjct: 319 EACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETM---------------- 362

Query: 319 DDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCK 378
              ED N   N    I Y   +        L  T           + DA+ V+   +V  
Sbjct: 363 ---EDRNCTPNV---ITYSSLI------DGLCKT---------GQVRDAQEVFKRMIVRG 401

Query: 379 VLRHFKSPETAWHFFCWV------------AYQPGYTHDVYALEKMLTILARHGHVELVD 426
           +  +  +  +  H FC                  G   D+     ++  L + G     +
Sbjct: 402 IEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEAN 461

Query: 427 RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSL 486
           RL   +++        T   +I  +   ++ D A   F D        +    ++ +S+L
Sbjct: 462 RLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQ----AVLPDVVTFSTL 517

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           +          DA  +LEEM+ S   PDV T++ L+  F   G     +++   + + G 
Sbjct: 518 VEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGC 577

Query: 547 EPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAA 594
           +P+   +  LI A+C+             +  + + P+  T   L       G  +EA  
Sbjct: 578 QPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARK 637

Query: 595 VEERCEK 601
           + ER E+
Sbjct: 638 ILERLER 644



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 120/599 (20%), Positives = 207/599 (34%), Gaps = 91/599 (15%)

Query: 81  NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNF 140
           + D+AL           F HN  T + L   L +++R  E   ++ +            +
Sbjct: 3   DPDAALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTY 62

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV-- 198
             ++Q    SGDL+       E R+   +     YN V+    K     +A++ FR +  
Sbjct: 63  AVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMEC 122

Query: 199 ----------ID--------------------EGAIPNSRTYTVMIEHLVNLGKLDSALE 228
                     ID                    +G +PN  TY V+I     + K+  A  
Sbjct: 123 EKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYL 182

Query: 229 VFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQ 287
           +   +    +      Y  ++ GF    + D A  L  +M ++G  P        L  + 
Sbjct: 183 LLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLC 242

Query: 288 EMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQ--LKPWLD 345
             G +  A E L EM            E G   D+   D   +G+     +   LK + D
Sbjct: 243 RNGLMDEAYELLDEM-----------RERGLQPDKFSYDTLMAGLCKTGKIDMALKVFED 291

Query: 346 PKALANTLDEWSPEVV---SLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPG- 401
                N+  +  P+VV   +L+A           CK+    +          + A   G 
Sbjct: 292 -----NSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGL 346

Query: 402 --------------------YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPF 441
                                T +V     ++  L + G V     +  ++   G+    
Sbjct: 347 CKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNV 406

Query: 442 STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAIN 501
            T   +I  + ++   D+AL    ++ T  G +     ++ Y++L+  L K  R  +A  
Sbjct: 407 VTYNSLIHGFCMTNGVDSAL-LLMEEMTATGCLPD---IITYNTLIDGLCKTGRAPEANR 462

Query: 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           +  +M      PDV T+S L+  F       + + LF  + +  V PD   F  L++ YC
Sbjct: 463 LFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYC 522

Query: 562 ------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
                       + +  S+  PD  T   L     K GR  EA  V +R  K    P++
Sbjct: 523 NAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNV 581



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 93/453 (20%), Positives = 175/453 (38%), Gaps = 48/453 (10%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+     +G ++      +E R+R       SY+ +M+   KTGK   A++ F  
Sbjct: 232 VTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFED 291

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
             +    P+   Y+ +I  L   G+LD A ++F  +     +     +  L++G    +R
Sbjct: 292 NSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDR 351

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYE- 315
             EA+ +L  M D    P      +L + + + G ++ A E  + M+      NV  Y  
Sbjct: 352 LQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNS 411

Query: 316 --------DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEW------SPEVV 361
                   +G D          S + +   +     L      NTL +       +PE  
Sbjct: 412 LIHGFCMTNGVD----------SALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEAN 461

Query: 362 SLLADAKFVWTTRLV----------CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEK 411
            L  D K  +    V          CK L       T +      A  P    DV     
Sbjct: 462 RLFGDMKAKFCNPDVITYSCLIGGFCK-LERIDMARTLFDDMLKQAVLP----DVVTFST 516

Query: 412 MLTILARHGHVELVDRLIAKL-RSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470
           ++      G V+  +RL+ ++  SD     ++   L+  F  + +  +A        +  
Sbjct: 517 LVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRG 576

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
           C P      ++ Y++L+    +  +   A  +LEEM+ +G+ P+V T+  L+  F   GD
Sbjct: 577 CQPN-----VVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGD 631

Query: 531 EKIVQKLFS-MVRQNGVEPDAYMFKVLIQAYCK 562
            +  +K+   + R    + D + ++V++   C+
Sbjct: 632 LEEARKILERLERDENCKADMFAYRVMMDGLCR 664



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 86/223 (38%), Gaps = 6/223 (2%)

Query: 79  APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV 138
           AP A+     M+A   NP+      T   L     K +R    +TL  D+     L   V
Sbjct: 457 APEANRLFGDMKAKFCNPDVI----TYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVV 512

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
            F  L++ Y  +G ++       E           +Y  ++  + K G+  EA    +++
Sbjct: 513 TFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRM 572

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
              G  PN  TYT +I+     GK   A  +   +    ++     Y  L+ GF G    
Sbjct: 573 AKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDL 632

Query: 259 DEAKSLLNEMRDDGKFPGR--AMRVALERMQEMGFIQGANEFL 299
           +EA+ +L  +  D        A RV ++ +   G +  A E L
Sbjct: 633 EEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAALELL 675



 Score = 45.8 bits (107), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 48/234 (20%), Positives = 93/234 (39%), Gaps = 6/234 (2%)

Query: 40  AQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVT-----HALRSAPNADSALSIMEALKS 94
           + LI  +  A R + +  L   + +   +P +VT       L        A  ++E ++ 
Sbjct: 305 STLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMED 364

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
             N + N  T  +L   L K+ +  + + +   +         V + +L+  +  +  ++
Sbjct: 365 R-NCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVD 423

Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
             L    E      L    +YN ++    KTG+  EA   F  +  +   P+  TY+ +I
Sbjct: 424 SALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLI 483

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
                L ++D A  +F  +    +      +  LVEG+      D+A+ LL EM
Sbjct: 484 GGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEM 537



 Score = 44.7 bits (104), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 13/157 (8%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L   L + +R  +  ++L+     GI P+V T++ ++      GD     +L   +R
Sbjct: 27  YNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLDKACELLEEMR 86

Query: 543 QNGVEPDAYMFKVLIQAYCK---------YLSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
           ++G  PDA ++  +I A CK         Y  +     +  T  ++   L K  R  EA 
Sbjct: 87  ESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNVITWTIMIDGLCKANRLPEAT 146

Query: 594 AVEERCEKINDVPSLALRGHIWAVSSADLTRVHSIYR 630
               + +K   VP+       + V      +VH ++R
Sbjct: 147 TYFAKMKKKGTVPN----EWTYNVLINGFCKVHKVHR 179


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 106/260 (40%), Gaps = 26/260 (10%)

Query: 365 ADAKFVWTTRLV---CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGH 421
             A FV  T L+   CKV    K  E A  F   +  + G+  DVY    ++  L     
Sbjct: 7   CSADFVTYTSLIQGLCKV----KRLEQALIFLGKMVSK-GFHPDVYTYTAVIHALCVENR 61

Query: 422 VELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLML 481
           +    + + ++ +  +     T  ++ID      + D A+      R  C P +     +
Sbjct: 62  LHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTA-----V 116

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
            Y+SL+  L K +R  +A ++LEEM++SG +PD+ T++ L+  F          ++F  +
Sbjct: 117 TYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQL 176

Query: 542 RQNGVEPDAYMFKVLIQAYCK-------------YLSNSNLMPDAATKELLKKSLWKEGR 588
              G  PD   +  LI   CK              + + + MP+  T   L     + G+
Sbjct: 177 VARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGK 236

Query: 589 RKEAAAVEERCEKINDVPSL 608
             EA  + ER  +    P +
Sbjct: 237 MDEAMNLLERMAETGSSPDV 256



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 97/220 (44%), Gaps = 8/220 (3%)

Query: 62  LNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQ 116
           + +R L P +VT+      L      D A++++  ++          T ++L + L K++
Sbjct: 72  MANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK--CVPTAVTYNSLISGLCKAE 129

Query: 117 RNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYN 176
           R  E   L+ ++  S  +     +  L+  +  S   +  L  + +   R       +Y+
Sbjct: 130 RASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYS 189

Query: 177 IVMSVYAKTGKNFEAVETFRQVIDEGA-IPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
            ++    K G+  EA++ F ++I  G+ +PN+ TY  +I     +GK+D A+ +   +  
Sbjct: 190 CLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAE 249

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                    Y  L+ GF  + R D+A  LLN+M   G  P
Sbjct: 250 TGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTP 289



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 75/178 (42%), Gaps = 5/178 (2%)

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
           +P+     + +HAL        R HE +  + ++++       V +  L+      G ++
Sbjct: 43  HPDVYTYTAVIHALCV----ENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVD 98

Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
             ++  ++ R++  + +  +YN ++S   K  +  EA +   +++  G IP+  TYT +I
Sbjct: 99  EAVALLSKMRKKC-VPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLI 157

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
                  K D AL VF  L     +     Y  L++G     R  EA  L   M   G
Sbjct: 158 TGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSG 215



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/240 (20%), Positives = 102/240 (42%), Gaps = 8/240 (3%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNP 96
           LID +    R + + +L S +  + + P  VT+      L  A  A  A  ++E +  + 
Sbjct: 87  LIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLCKAERASEAYDLLEEMVYSG 145

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
               +  T   L T   KS+++ +   +   + +  F    V +  L+      G L+  
Sbjct: 146 CIP-DIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEA 204

Query: 157 LSTWNEYRQRAKLL-STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
           +  +    +    + +T +YN ++S + + GK  EA+    ++ + G+ P+  TYT ++ 
Sbjct: 205 IDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMN 264

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               L +LD A ++ + +    +      +  L++G     R  +A  +L EMR     P
Sbjct: 265 GFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSP 324



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 12/144 (8%)

Query: 136 VSVNFM--NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE 193
           VS N M   L +   +S  +ELV     E R+R        Y  V+    +  K  EA  
Sbjct: 360 VSFNIMIRGLCKVNRSSEAMELV----EEARRRRCNPDVVMYTTVIDGLCREKKVDEACR 415

Query: 194 TFRQVIDE-GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
            +R++++E G +PNS TY+ +I  L N G LD A        +  I      Y +L++ F
Sbjct: 416 VYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRARGYIEKGCVPNI----GTYNLLIDAF 471

Query: 253 VGVERFDEAKSLLNEMRDDGKFPG 276
               R ++A+ LL++M   G F G
Sbjct: 472 RKANRDEDARELLDDMVQRG-FGG 494



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 38/190 (20%), Positives = 79/190 (41%), Gaps = 2/190 (1%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD-ISSSKFLNVSVNF 140
           +D AL + E L +   F  +  T   L   L K  R  E   L G  I S   +  +V +
Sbjct: 166 SDDALRVFEQLVAR-GFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTY 224

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
            +L+  +   G ++  ++      +        +Y  +M+ + K  +  +A +   Q+  
Sbjct: 225 NSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTR 284

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
           +G  P+  T+T +++ L    +L  A+ +   +       T   Y  +++G+    + +E
Sbjct: 285 KGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEE 344

Query: 261 AKSLLNEMRD 270
           A+  + E  D
Sbjct: 345 ARKFMLEEMD 354



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 77/195 (39%), Gaps = 18/195 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D++    ++T   +    +   R+  +L + G R    T   +ID      +   A
Sbjct: 145 GCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEA 204

Query: 461 LKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
           +  F        C P +     + Y+SL+    +  +  +A+N+LE M  +G  PDV T+
Sbjct: 205 IDLFGRMIKSGSCMPNT-----VTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTY 259

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKEL 578
           + LM  F           L + + + G+ PD   F  L+   C+     N + DA     
Sbjct: 260 TTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCR----ENRLSDAV---- 311

Query: 579 LKKSLWKEGRRKEAA 593
               +  E RRK  +
Sbjct: 312 ---HILGEMRRKSCS 323



 Score = 40.4 bits (93), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 38/194 (19%), Positives = 79/194 (40%), Gaps = 4/194 (2%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A++++E +    + S +  T   L     K  R  +   L+  ++        V F +
Sbjct: 238 DEAMNLLERMAETGS-SPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTS 296

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           LM        L   +    E R+++   +  +YN ++  Y +  +  EA +   + +D  
Sbjct: 297 LMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMD-- 354

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             PN  ++ +MI  L  + +   A+E+       R       Y  +++G    ++ DEA 
Sbjct: 355 CPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEAC 414

Query: 263 SLLNEMRDD-GKFP 275
            +  +M ++ G  P
Sbjct: 415 RVYRKMLEEPGCLP 428


>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 604

 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 102/539 (18%), Positives = 199/539 (36%), Gaps = 83/539 (15%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + H L           +++ +  NP      + L  +  +L  ++   +  T+   I + 
Sbjct: 96  LIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSDVVRMLGNAKMVRQAITIFYQIKTR 155

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLL-STESYNIVMSVYAKTGKNFE 190
           K   ++  + +++      G  E V   +NE          T +Y+ ++S + K G+   
Sbjct: 156 KCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDS 215

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A++   ++ + G  P ++ YT++I           AL +F  +     +     Y  L+ 
Sbjct: 216 AIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIR 275

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRA-MRVALERMQEMGFIQGANEFLREMLPDKRIK 309
           G     R DEA     EM+ +G  P    M   +  + + G +  A +  +EM   + I 
Sbjct: 276 GLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIP 335

Query: 310 NVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVV-SLLADAK 368
           +V                      + Y   +K   + K+ A+ +  W   +  S ++ + 
Sbjct: 336 SV----------------------VTYNTIIKALFESKSRASEVPSWFERMKESGISPSS 373

Query: 369 FVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVD 426
           F ++  +   CK  R                           +EK +             
Sbjct: 374 FTYSILIDGFCKTNR---------------------------MEKAMM------------ 394

Query: 427 RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSL 486
            L+ ++   G     +    +ID  G +K+ D A + F + +  CG  S      +Y+ +
Sbjct: 395 -LLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSA----RVYAVM 449

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           ++ L K  R  DAIN+ +EM   G  PDV  ++ LM   A  G           ++++G 
Sbjct: 450 IKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGC 509

Query: 547 EPDAYMFKVLIQAYCK---------YLSN---SNLMPDAATKELLKKSLWKEGRRKEAA 593
            PD   + +++    K          LSN   S + PD  +   +  +L   G  +EA+
Sbjct: 510 IPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAS 568



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 97/226 (42%), Gaps = 21/226 (9%)

Query: 54  SSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLA 113
           S  S SS     L+D F  T+ +      + A+ ++E +     F    +   +L   L 
Sbjct: 367 SGISPSSFTYSILIDGFCKTNRM------EKAMMLLEEMDEK-GFPPCPAAYCSLIDALG 419

Query: 114 KSQRN-------HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR 166
           K++R         ELK   G  SS++   V +  +        +G L+  ++ ++E  + 
Sbjct: 420 KAKRYDLACELFQELKENCGS-SSARVYAVMIKHL------GKAGRLDDAINMFDEMNKL 472

Query: 167 AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
                  +YN +MS  A+TG   EA+ T R++ + G IP+  +Y +++  L   G    A
Sbjct: 473 GCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRA 532

Query: 227 LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +E+ S +    ++     Y  ++        F+EA  L+ EM   G
Sbjct: 533 MEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLG 578



 Score = 45.4 bits (106), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 107/256 (41%), Gaps = 26/256 (10%)

Query: 355 EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDV---YALEK 411
           +W P+    L          LV +V++          FF W A +  Y HD     AL  
Sbjct: 39  KWGPDAEKALEVLMLRVDHWLVREVMKTDVGVNVKMQFFRWAAKRRNYEHDTSTYMALIH 98

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL- 470
            L ++ ++G  E+   +   +R+    +  + +  ++   G +K    A+  F+  +T  
Sbjct: 99  CLEVVEQYG--EMWKMIQEMVRNPICVVTPTELSDVVRMLGNAKMVRQAITIFYQIKTRK 156

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVL-EEMIFSG-IVPDVQTFSGLMYHFALQ 528
           C PI++      Y+S++  L   +  ++ ++ L  EM   G   PD  T+S L+  F   
Sbjct: 157 CQPIAQ-----AYNSMIIMLMH-EGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKL 210

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATK 576
           G      +L + +++ G++P   ++ +LI  + K+            + +    PD  T 
Sbjct: 211 GRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTY 270

Query: 577 ELLKKSLWKEGRRKEA 592
             L + L K GR  EA
Sbjct: 271 TELIRGLGKAGRIDEA 286


>gi|125548468|gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
          Length = 586

 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 88/178 (49%), Gaps = 3/178 (1%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F +++  Y  +G LE  ++ +N+      + +T +YN++++ Y K G    AVE ++Q
Sbjct: 326 VTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQ 385

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +      P+  T++ +I+     G+LD AL ++S +   RI+     + I++       R
Sbjct: 386 MTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNR 445

Query: 258 FDEAKSLLNE--MRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRY 313
            DEA  LLNE  +R D           ++ + + G +  AN  +R+ + +K  +  +Y
Sbjct: 446 SDEAICLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEAN-LIRKGMEEKGCRPDKY 502



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/231 (21%), Positives = 101/231 (43%), Gaps = 28/231 (12%)

Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK-----K 456
           Y+ DV++   ++  + R G V+    L+ ++   G      T  +I+D  G+ +     +
Sbjct: 250 YSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVD--GLCRTNEVSR 307

Query: 457 ADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
               L+    D  +C P      ++ ++S++    K  +  DA+ V  +M+ SGI+P+  
Sbjct: 308 GHEVLRRLQRD-GVCMPN-----VVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTV 361

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------L 564
           T++ L+  +   GD     +++  + +    PD   F  LI  YC+             +
Sbjct: 362 TYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDM 421

Query: 565 SNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIW 615
           +   + P+  T  ++  SL K+ R  EA  +     ++N  P +A +  I+
Sbjct: 422 AQHRIQPNVYTFSIIIHSLCKQNRSDEAICLL---NELNLRPDIAPQAFIY 469



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 97/220 (44%), Gaps = 11/220 (5%)

Query: 61  LLNDRLLDP--FIVTHALRSAPNADSALSIMEALKSNP-NFSHNQSTLHALATVLAKSQR 117
           LL  R +DP       ALR AP A SAL++  AL  +P + + +  +   +  VL +S R
Sbjct: 103 LLGFRRIDPSPLAAVAALRLAPCASSALAVFTALHCSPLSITPSAHSCQQIIVVLCRSGR 162

Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL----ELVLSTWNEYRQRAKLLSTE 173
             +   L   +++    +    F++ +    T  +L      +LS  +E+  R +     
Sbjct: 163 QADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVE---AY 219

Query: 174 SYNIVMSVYAKTGKNFEAVETF-RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           +YN +MS     G+  + V  F R + D    P+  ++ V+I+ +  +G++  ALE+   
Sbjct: 220 AYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVER 279

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +        +  + I+V+G            +L  ++ DG
Sbjct: 280 MNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDG 319



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 1/139 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F +L+  Y   G L+  L  W++  Q     +  +++I++    K  ++ EA+    +
Sbjct: 396 VTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAICLLNE 455

Query: 198 V-IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           + +     P +  Y  +I+ L   GK+D A  +   +     +     Y IL+ G+    
Sbjct: 456 LNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKS 515

Query: 257 RFDEAKSLLNEMRDDGKFP 275
           R  EA    +EM + G  P
Sbjct: 516 RISEAIMFFHEMVEAGCSP 534


>gi|356556194|ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 829

 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 114/580 (19%), Positives = 219/580 (37%), Gaps = 84/580 (14%)

Query: 67  LDPFIVTHAL------RSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHE 120
           LDP +VT+ +      +   + D  L +++ ++S      ++ T   + +   +     E
Sbjct: 246 LDPTLVTYNVMLDVYGKMGRSWDRILELLDEMRSK-GLELDEFTCSTVISACGREGMLDE 304

Query: 121 LKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS 180
            +  + ++  + +   +V + +++Q +  +G     LS   E         + +YN + +
Sbjct: 305 ARKFLAELKFNGYKPGTVTYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSVTYNELAA 364

Query: 181 VYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR 240
            Y + G   E +     +  +G +PN+ TYT +I+     G+ D AL +FS +  +    
Sbjct: 365 TYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAP 424

Query: 241 TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFL 299
               Y  ++       R ++   +L EM+ +G  P RA     L    E G     N+ L
Sbjct: 425 NVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVL 484

Query: 300 REML-----PDKRIKNV---RYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDP----- 346
           REM      PDK   N     Y   GS+ D  +           YG  +K    P     
Sbjct: 485 REMKNCGFEPDKDTFNTLISAYARCGSEVDSAK----------MYGEMVKSGFTPCVTTY 534

Query: 347 KALANTL---DEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYT 403
            AL N L    +W     S++ D +            + FK  E ++        + G  
Sbjct: 535 NALLNALARRGDWKA-AESVIQDMR-----------TKGFKPNENSYSLLLHCYSKAGNV 582

Query: 404 HDVYALEKML--------------TILARHG--HVELVDRLIAKLRSDGMRLPFSTIRLI 447
             +  +EK +               +L  H   H+  ++R   +L+  G +     I  +
Sbjct: 583 KGIEKVEKEIYDGHVFPSWILLRTLVLTNHKCRHLRGMERAFDQLQKYGYKPDLVVINSM 642

Query: 448 IDFYGISK---KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLE 504
           +  +  +K   KA   L   H+    CG       +  Y+ L+    +    + A  VL+
Sbjct: 643 LSMFARNKMFSKAREMLHFIHE----CGLQPN---LFTYNCLMDLYVREGECWKAEEVLK 695

Query: 505 EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC--- 561
            +  SG  PDV +++ ++  F  +G  +    + S +   G++P    +   +  Y    
Sbjct: 696 GIQNSGPEPDVVSYNTVIKGFCRKGLMQEAIGVLSEMTTKGIQPTIVTYNTFLSGYAGME 755

Query: 562 ---------KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                    +++   N  P   T ++L     K G+ +EA
Sbjct: 756 LFDEANEVIRFMIEHNCRPSELTYKILVDGYCKAGKYEEA 795



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 95/498 (19%), Positives = 182/498 (36%), Gaps = 78/498 (15%)

Query: 75  ALRSAPNADSALSIME----ALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           AL  + N + AL + E       S+ N   +   +  +  +L +  ++     L   I  
Sbjct: 149 ALDLSGNWERALLLFEWGWLHFGSDQNLRLDNQVVELMVRILGRESQHSIASKLFDLIPV 208

Query: 131 SKF-LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF 189
            K+ L+V   +  ++  Y+ +G  +  +  + + ++     +  +YN+++ VY K G+++
Sbjct: 209 EKYSLDVRA-YTTILHSYARTGKYKRAIDLFGKMKEIGLDPTLVTYNVMLDVYGKMGRSW 267

Query: 190 EAV-ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
           + + E   ++  +G   +  T + +I      G LD A +  + L     K  +  Y  +
Sbjct: 268 DRILELLDEMRSKGLELDEFTCSTVISACGREGMLDEARKFLAELKFNGYKPGTVTYNSM 327

Query: 249 VEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQ-EMGFIQGANEFLREMLPDKR 307
           ++ F     + EA S+L EM D+   P       L       GF+      +  M     
Sbjct: 328 LQVFGKAGIYTEALSILKEMEDNNCPPDSVTYNELAATYVRAGFLDEGMAVIDTMTSKGV 387

Query: 308 IKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLAD- 366
           + N   Y               + V  AYG   K   +  AL          + SL+ D 
Sbjct: 388 MPNAITY---------------TTVIDAYG---KAGREDDAL---------RLFSLMKDL 420

Query: 367 --AKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVEL 424
             A  V+T   V  +L      E      C +    G   +      ML + +  G    
Sbjct: 421 GCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLN-GCAPNRATWNTMLAVCSEEGKHNY 479

Query: 425 VDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS 484
           V++++ ++++ G      T   +I  Y                   CG            
Sbjct: 480 VNKVLREMKNCGFEPDKDTFNTLISAYA-----------------RCG------------ 510

Query: 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544
                      + D+  +  EM+ SG  P V T++ L+   A +GD K  + +   +R  
Sbjct: 511 ----------SEVDSAKMYGEMVKSGFTPCVTTYNALLNALARRGDWKAAESVIQDMRTK 560

Query: 545 GVEPDAYMFKVLIQAYCK 562
           G +P+   + +L+  Y K
Sbjct: 561 GFKPNENSYSLLLHCYSK 578



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/97 (22%), Positives = 45/97 (46%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SYN V+  + + G   EA+    ++  +G  P   TY   +     +   D A EV   +
Sbjct: 708 SYNTVIKGFCRKGLMQEAIGVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFM 767

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
                + +   Y ILV+G+    +++EA   ++++++
Sbjct: 768 IEHNCRPSELTYKILVDGYCKAGKYEEAMDFVSKIKE 804


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 93/456 (20%), Positives = 171/456 (37%), Gaps = 86/456 (18%)

Query: 174 SYNIVMSVYAKTGKNFEAV-ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           ++N ++    + G  FE V E   Q+ + G  P+ R Y  +I+ +   G L+ A E+ + 
Sbjct: 253 TFNTLIGYLCRNGL-FERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNR 311

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM-RDDGKFPGRAMRVALERMQEMGF 291
           +P   +K     Y  +++G    ER+ EA+ LL+EM + D         + ++   + G 
Sbjct: 312 MPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGL 371

Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALAN 351
           +    E L +ML    + +V  Y    +    E         I   V L      K++++
Sbjct: 372 VDRVIELLEQMLSHGCMPDVITYTTVINGFCKEG-------LIDEAVMLL-----KSMSS 419

Query: 352 TLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEK 411
                 P  VS      +    + +C   R   + E           Q G   +      
Sbjct: 420 C--GCKPNTVS------YTIVLKGLCSAGRWVDAEELMSQMI-----QQGCPPNPVTFNT 466

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           ++  L + G VE    L+ ++  +G      +   +ID  G + K + AL+         
Sbjct: 467 LINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALE--------- 517

Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
                                         +L  M+  GI P+   +S +    + +G  
Sbjct: 518 ------------------------------LLNVMVNKGISPNTIIYSSIACALSREGRV 547

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELL 579
             V ++F  ++   +  DA ++  +I + CK            Y+ ++  MP+ +T  +L
Sbjct: 548 NKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTML 607

Query: 580 KKSLWKEGRRKEAAA-VEERCEKINDVPSLALRGHI 614
            K L  EG  KEA   + E C +       ALR H+
Sbjct: 608 IKGLASEGLAKEAQELLSELCSR------GALRKHL 637



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 86/198 (43%), Gaps = 17/198 (8%)

Query: 123 TLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV------LSTWNEYRQRAKLLSTE--- 173
           T+I  I     L V+   +N M  Y    ++         L +   +++  +LLS     
Sbjct: 291 TIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQK 350

Query: 174 -------SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
                  ++NI++  + + G     +E   Q++  G +P+  TYT +I      G +D A
Sbjct: 351 DCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEA 410

Query: 227 LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA-MRVALER 285
           + +  ++     K  +  Y I+++G     R+ +A+ L+++M   G  P        +  
Sbjct: 411 VMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINF 470

Query: 286 MQEMGFIQGANEFLREML 303
           + + G ++ A E L++ML
Sbjct: 471 LCKKGLVEQAIELLKQML 488



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 49/105 (46%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           +T SY IV+      G+  +A E   Q+I +G  PN  T+  +I  L   G ++ A+E+ 
Sbjct: 425 NTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELL 484

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             + +         Y  +++G     + +EA  LLN M + G  P
Sbjct: 485 KQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISP 529



 Score = 46.2 bits (108), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+++L+ L   KR  D   +++EM+     P++ TF+ L+ +    G  + V ++ + + 
Sbjct: 219 YNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMS 278

Query: 543 QNGVEPDAYMFKVLIQAYCK--YLSNSN----------LMPDAATKELLKKSLWKEGRRK 590
           ++G  PD  M+  +I   CK  +L  +N          L P+      + K L    R K
Sbjct: 279 EHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWK 338

Query: 591 EA 592
           EA
Sbjct: 339 EA 340



 Score = 43.1 bits (100), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 79/434 (18%), Positives = 157/434 (36%), Gaps = 84/434 (19%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN +++ Y + G+   A      V      PN+ T+  ++  L   G++  ALEV   +
Sbjct: 81  AYNAMVAGYCRAGQLAAARRLAAAV---PVPPNAYTFFPVVRGLCTRGRIADALEVLDEM 137

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFI 292
                      Y +++E       F  +  +L  M   G         + L  + E G +
Sbjct: 138 SFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCV 197

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
             A   LR++          ++  G + D    +    G+ +A     K W D + L + 
Sbjct: 198 DEAVGLLRKL---------AFF--GCEADIVSYNAVLKGLCMA-----KRWGDVEELMDE 241

Query: 353 LD--EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
           +   + +P +V+      ++    L  +V  H    + + H         G T D+    
Sbjct: 242 MVRVDCAPNIVTFNTLIGYLCRNGLFERV--HEVLAQMSEH---------GCTPDIRMYA 290

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470
            ++  + + GH+E+ + ++ ++ S                YG+                 
Sbjct: 291 TIIDGICKEGHLEVANEILNRMPS----------------YGLKPN-------------- 320

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
                    ++ Y+++L+ L   +R  +A  +L EM       D  TF+ L+  F   G 
Sbjct: 321 ---------VVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGL 371

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKEL 578
              V +L   +  +G  PD   +  +I  +C            K +S+    P+  +  +
Sbjct: 372 VDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTI 431

Query: 579 LKKSLWKEGRRKEA 592
           + K L   GR  +A
Sbjct: 432 VLKGLCSAGRWVDA 445



 Score = 42.7 bits (99), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 39/194 (20%), Positives = 81/194 (41%), Gaps = 4/194 (2%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           A+  L+ M +    PN     + L  L +    ++R  E + L+ ++         V F 
Sbjct: 305 ANEILNRMPSYGLKPNVVCYNTVLKGLCS----AERWKEAEELLSEMFQKDCPLDDVTFN 360

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            L+ ++  +G ++ V+    +      +    +Y  V++ + K G   EAV   + +   
Sbjct: 361 ILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSC 420

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G  PN+ +YT++++ L + G+   A E+ S +           +  L+         ++A
Sbjct: 421 GCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQA 480

Query: 262 KSLLNEMRDDGKFP 275
             LL +M  +G  P
Sbjct: 481 IELLKQMLVNGCSP 494



 Score = 40.4 bits (93), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 66/166 (39%), Gaps = 1/166 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F  L+ +    G +E  +    +           SY+ V+    K GK  EA+E    
Sbjct: 462 VTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNV 521

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++++G  PN+  Y+ +   L   G+++  +++F  +    I+  +  Y  ++        
Sbjct: 522 MVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWE 581

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREM 302
            D A      M  +G  P  +    L + +   G  + A E L E+
Sbjct: 582 TDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 93/456 (20%), Positives = 171/456 (37%), Gaps = 86/456 (18%)

Query: 174 SYNIVMSVYAKTGKNFEAV-ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           ++N ++    + G  FE V E   Q+ + G  P+ R Y  +I+ +   G L+ A E+ + 
Sbjct: 253 TFNTLIGYLCRNGL-FERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNR 311

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM-RDDGKFPGRAMRVALERMQEMGF 291
           +P   +K     Y  +++G    ER+ EA+ LL+EM + D         + ++   + G 
Sbjct: 312 MPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGL 371

Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALAN 351
           +    E L +ML    + +V  Y    +    E         I   V L      K++++
Sbjct: 372 VDRVIELLEQMLSHGCMPDVITYTTVINGFCKEG-------LIDEAVMLL-----KSMSS 419

Query: 352 TLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEK 411
                 P  VS      +    + +C   R   + E           Q G   +      
Sbjct: 420 C--GCKPNTVS------YTIVLKGLCSAGRWVDAEELMSQMI-----QQGCPPNPVTFNT 466

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           ++  L + G VE    L+ ++  +G      +   +ID  G + K + AL+         
Sbjct: 467 LINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALE--------- 517

Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
                                         +L  M+  GI P+   +S +    + +G  
Sbjct: 518 ------------------------------LLNVMVNKGISPNTIIYSSIACALSREGRV 547

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELL 579
             V ++F  ++   +  DA ++  +I + CK            Y+ ++  MP+ +T  +L
Sbjct: 548 NKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTML 607

Query: 580 KKSLWKEGRRKEAAA-VEERCEKINDVPSLALRGHI 614
            K L  EG  KEA   + E C +       ALR H+
Sbjct: 608 IKGLASEGLAKEAQELLSELCSR------GALRKHL 637



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 86/198 (43%), Gaps = 17/198 (8%)

Query: 123 TLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV------LSTWNEYRQRAKLLSTE--- 173
           T+I  I     L V+   +N M  Y    ++         L +   +++  +LLS     
Sbjct: 291 TIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQK 350

Query: 174 -------SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
                  ++NI++  + + G     +E   Q++  G +P+  TYT +I      G +D A
Sbjct: 351 DCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEA 410

Query: 227 LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA-MRVALER 285
           + +  ++     K  +  Y I+++G     R+ +A+ L+++M   G  P        +  
Sbjct: 411 VMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINF 470

Query: 286 MQEMGFIQGANEFLREML 303
           + + G ++ A E L++ML
Sbjct: 471 LCKKGLVEQAIELLKQML 488



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 49/105 (46%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           +T SY IV+      G+  +A E   Q+I +G  PN  T+  +I  L   G ++ A+E+ 
Sbjct: 425 NTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELL 484

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             + +         Y  +++G     + +EA  LLN M + G  P
Sbjct: 485 KQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISP 529



 Score = 46.2 bits (108), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+++L+ L   KR  D   +++EM+     P++ TF+ L+ +    G  + V ++ + + 
Sbjct: 219 YNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMS 278

Query: 543 QNGVEPDAYMFKVLIQAYCK--YLSNSN----------LMPDAATKELLKKSLWKEGRRK 590
           ++G  PD  M+  +I   CK  +L  +N          L P+      + K L    R K
Sbjct: 279 EHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWK 338

Query: 591 EA 592
           EA
Sbjct: 339 EA 340



 Score = 43.1 bits (100), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 79/434 (18%), Positives = 157/434 (36%), Gaps = 84/434 (19%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN +++ Y + G+   A      V      PN+ T+  ++  L   G++  ALEV   +
Sbjct: 81  AYNAMVAGYCRAGQLAAARRLAAAV---PVPPNAYTFFPVVRGLCTRGRIADALEVLDEM 137

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFI 292
                      Y +++E       F  +  +L  M   G         + L  + E G +
Sbjct: 138 SFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCV 197

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
             A   LR++          ++  G + D    +    G+ +A     K W D + L + 
Sbjct: 198 DEAVGLLRKL---------AFF--GCEADIVSYNAVLKGLCMA-----KRWGDVEELMDE 241

Query: 353 LD--EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
           +   + +P +V+      ++    L  +V  H    + + H         G T D+    
Sbjct: 242 MVRVDCAPNIVTFNTLIGYLCRNGLFERV--HEVLAQMSEH---------GCTPDIRMYA 290

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470
            ++  + + GH+E+ + ++ ++ S                YG+                 
Sbjct: 291 TIIDGICKEGHLEVANEILNRMPS----------------YGLKPN-------------- 320

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
                    ++ Y+++L+ L   +R  +A  +L EM       D  TF+ L+  F   G 
Sbjct: 321 ---------VVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGL 371

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKEL 578
              V +L   +  +G  PD   +  +I  +C            K +S+    P+  +  +
Sbjct: 372 VDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTI 431

Query: 579 LKKSLWKEGRRKEA 592
           + K L   GR  +A
Sbjct: 432 VLKGLCSAGRWVDA 445



 Score = 42.7 bits (99), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 39/194 (20%), Positives = 81/194 (41%), Gaps = 4/194 (2%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           A+  L+ M +    PN     + L  L +    ++R  E + L+ ++         V F 
Sbjct: 305 ANEILNRMPSYGLKPNVVCYNTVLKGLCS----AERWKEAEELLSEMFQKDCPLDDVTFN 360

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            L+ ++  +G ++ V+    +      +    +Y  V++ + K G   EAV   + +   
Sbjct: 361 ILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSC 420

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G  PN+ +YT++++ L + G+   A E+ S +           +  L+         ++A
Sbjct: 421 GCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQA 480

Query: 262 KSLLNEMRDDGKFP 275
             LL +M  +G  P
Sbjct: 481 IELLKQMLVNGCSP 494



 Score = 40.4 bits (93), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 66/166 (39%), Gaps = 1/166 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F  L+ +    G +E  +    +           SY+ V+    K GK  EA+E    
Sbjct: 462 VTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNV 521

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++++G  PN+  Y+ +   L   G+++  +++F  +    I+  +  Y  ++        
Sbjct: 522 MVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWE 581

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREM 302
            D A      M  +G  P  +    L + +   G  + A E L E+
Sbjct: 582 TDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSEL 627


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 91/480 (18%), Positives = 185/480 (38%), Gaps = 71/480 (14%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
           N S +  +   L   LAK+ + ++ + L   +  S     +V + +L+     +   +  
Sbjct: 5   NVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDA 64

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
              + +  +R    S  +YN+++    K G   EA +  +++I++G +P+  TY  +++ 
Sbjct: 65  RELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDG 124

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
           L   G+++ AL +F+ +  +      + +  ++ G     + D+A  + +EM      P 
Sbjct: 125 LCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPD 184

Query: 277 R-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIA 335
             +  + ++ + + G +  A +  R ML                      D   +   + 
Sbjct: 185 SWSYGILIDGLAKAGKLNEAYKLFRRML----------------------DSGITPSAVT 222

Query: 336 YGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCW 395
           Y V +        LA TLDE                        L  FKS  +       
Sbjct: 223 YNVVIHGM----CLAYTLDE-----------------------ALELFKSMRSK------ 249

Query: 396 VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455
                G     +    ++    + G ++   RL+ ++  DG      T   +I       
Sbjct: 250 -----GCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIA 304

Query: 456 KADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
           + D A     D  +  C P      ++  ++L+  L K  R  +A  VL+ M+ SG  PD
Sbjct: 305 RVDDARHLLEDMVKRQCKPT-----VVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPD 359

Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAA 574
           V T++ L++     G  +  ++L S +   G+ P+   +  L+   CK    +N +P+A 
Sbjct: 360 VVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCK----ANRLPEAC 415



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 101/485 (20%), Positives = 181/485 (37%), Gaps = 43/485 (8%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  +M     SG +E  L  +NE  +     +  S+N ++    +  K  +A + F +
Sbjct: 116 VTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHE 175

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +      P+S +Y ++I+ L   GKL+ A ++F  +    I  ++  Y +++ G      
Sbjct: 176 MEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYT 235

Query: 258 FDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
            DEA  L   MR  G  P R    + ++   + G +  A   L+ M  D  + +V  Y  
Sbjct: 236 LDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYST 295

Query: 317 --GSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTR 374
                      DD    +      Q KP +      NTL      +  L    +      
Sbjct: 296 LISGLCSIARVDDARHLLEDMVKRQCKPTV---VTQNTL------IHGLCKAGRIKEARE 346

Query: 375 LVCKVLRHFKSPE-----TAWHFFCWVAYQP------------GYTHDVYALEKMLTILA 417
           ++  ++   +SP+     T  H  C                  G   +V     +++ L 
Sbjct: 347 VLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLC 406

Query: 418 RHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKF 477
           +   +     + A+++S G      T   +I  +  + + D  LK F +   +C  IS  
Sbjct: 407 KANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGE--MVCAGISPD 464

Query: 478 KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG--DEKIVQ 535
              ++Y +L   L K  R   A+ +L E   S      + +   +Y FA+ G  D   ++
Sbjct: 465 H--VVYGTLAAELCKSGRSARALEILREGRES---LRSEAWGDEVYRFAVDGLLDAGKME 519

Query: 536 KLFSMVR---QNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                VR   + G  P       L+   CK  S       A  +E++  +   + R K A
Sbjct: 520 MALGFVRDMVRGGQLPAPERCASLVAGLCK--SGQGGEARAVLEEIMDLAYGGKARGKAA 577

Query: 593 AAVEE 597
             VEE
Sbjct: 578 KFVEE 582



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/301 (20%), Positives = 120/301 (39%), Gaps = 27/301 (8%)

Query: 16  FTQLQTRSFVRAPFTNKLAL--YLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVT 73
           F  ++++    + FT  + +  + +R ++ ++ RL  R      +          P +VT
Sbjct: 243 FKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHV----------PDVVT 292

Query: 74  H-----ALRSAPNADSALSIMEAL---KSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           +      L S    D A  ++E +   +  P      + +H L     K+ R  E + ++
Sbjct: 293 YSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLC----KAGRIKEAREVL 348

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
             + SS      V +  L+  +  +G  E      ++   R    +  +Y  ++S   K 
Sbjct: 349 DAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKA 408

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
            +  EA   F Q+   G  PN  TYT +I    + G++D  L++F  +    I      Y
Sbjct: 409 NRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVY 468

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGK---FPGRAMRVALERMQEMGFIQGANEFLREM 302
             L        R   A  +L E R+  +   +     R A++ + + G ++ A  F+R+M
Sbjct: 469 GTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLDAGKMEMALGFVRDM 528

Query: 303 L 303
           +
Sbjct: 529 V 529



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 79/196 (40%), Gaps = 22/196 (11%)

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA---LKAFHDDRTLCGPISKFKLMLLYS 484
           L   +RS G R    T  ++ID +    K D A   LK   DD            ++ YS
Sbjct: 242 LFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDD-------GHVPDVVTYS 294

Query: 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544
           +L+  L    R  DA ++LE+M+     P V T + L++     G  K  +++   +  +
Sbjct: 295 TLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSS 354

Query: 545 GVEPDAYMFKVLIQAYCK---------YLSN---SNLMPDAATKELLKKSLWKEGRRKEA 592
           G  PD   +  L+  +C+          LS+     L P+  T   L   L K  R  EA
Sbjct: 355 GQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEA 414

Query: 593 AAVEERCEKINDVPSL 608
             V  + +     P+L
Sbjct: 415 CGVFAQMKSSGCAPNL 430



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 12/137 (8%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y  L+  L K  +  DA ++ ++++ SG+ P    ++ L++   +       ++LF+ + 
Sbjct: 13  YGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMN 72

Query: 543 QNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRK 590
           + G  P    + V+I A C            K +     +PD  T   +   L K GR +
Sbjct: 73  RRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVE 132

Query: 591 EAAAVEERCEKINDVPS 607
           EA  +    E++   P+
Sbjct: 133 EALLLFNEMERLGCTPN 149


>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 111/514 (21%), Positives = 206/514 (40%), Gaps = 55/514 (10%)

Query: 106 HALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQ 165
           ++L   L+K++R  E ++ + ++  +     +  +   +  Y  + +         E R+
Sbjct: 491 NSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE 550

Query: 166 RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
              L +      +++ Y K  K  EA   +R ++D+G + +++TYTV++  L    K+D 
Sbjct: 551 CGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDD 610

Query: 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER 285
           A E+F  +    I      Y +L+ GF  +    +A S+ +EM ++G  P     V +  
Sbjct: 611 AEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTP----NVIIYN 666

Query: 286 MQEMGFIQ-GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWL 344
           M   GF + G  E  +E+L +  +K +                 N+   + Y   +  + 
Sbjct: 667 MLLGGFCRSGEIEKAKELLDEMSVKGLH---------------PNA---VTYCTIIDGYC 708

Query: 345 DPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTH 404
               LA     +    +  L    FV+TT LV    R     E A   F     + G   
Sbjct: 709 KSGDLAEAFRLFDEMKLKGLVPDSFVYTT-LVDGCCR-LNDVERAITIF--GTNKKGCAS 764

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFS-----TIRLIIDFYGISKKADA 459
                  ++  + + G  EL   ++ +L  DG    F      T  ++ID+       +A
Sbjct: 765 STAPFNALINWVFKFGKTELKTEVLNRLM-DGSFDRFGKPNDVTYNIMIDYLCKEGNLEA 823

Query: 460 ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           A + FH  +      +    ++ Y+SLL    K  R  +   V +E I +GI PD   +S
Sbjct: 824 AKELFHQMQN----ANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYS 879

Query: 520 GLMYHFALQG-DEKIVQKLFSMVRQNGVEPDAYM----FKVLIQAYCKY----------- 563
            ++  F  +G   K +  +  M  +N V+    +     + L+  + K            
Sbjct: 880 VIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVME 939

Query: 564 -LSNSNLMPDAATK-ELLKKSLWKEGRRKEAAAV 595
            +     +PD+AT  EL+ +S     +R EA AV
Sbjct: 940 NMVRLQYIPDSATVIELINESCISSNQRVEADAV 973



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 100/242 (41%), Gaps = 9/242 (3%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           ++   L    NAD+A  ++  + S+   +           V++K     + K L   + +
Sbjct: 317 LLIDGLLKGRNADAAKGLVHEMVSH-GINIKPYMYDCCICVMSKEGVMEKAKALFDGMIA 375

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           S  +  +  + +L++ Y    ++        E ++R  ++S  +Y  V+     +G    
Sbjct: 376 SGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDG 435

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A    +++I  G  PN   YT +I+  +   +   A+ V   +    I      Y  L+ 
Sbjct: 436 AYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLII 495

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKN 310
           G    +R DEA+S L EM ++G  P      A       G+I+ A+EF      DK +K 
Sbjct: 496 GLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFIS----GYIE-ASEFAS---ADKYVKE 547

Query: 311 VR 312
           +R
Sbjct: 548 MR 549



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 90/452 (19%), Positives = 173/452 (38%), Gaps = 67/452 (14%)

Query: 160 WNEYR---QRAKLLSTESYNIVMSVYAKTGKN-------FEAVETFR------------- 196
           W+ Y+   +R  +   ++Y++++  + + G         F+  + FR             
Sbjct: 206 WDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLK 265

Query: 197 -QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
             +I +G +P   TY V+I+ L  + +L+ A  +   +  + +   +  Y +L++G +  
Sbjct: 266 ESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKG 325

Query: 256 ERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
              D AK L++EM   G           +  M + G ++ A      M+    I   + Y
Sbjct: 326 RNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAY 385

Query: 315 E---DGSDDDEDENDDNNSGVRI----------AYGVQLKPWL---DPKALANTLDE--- 355
               +G   +++        V +           YG  +K      D     N + E   
Sbjct: 386 ASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIA 445

Query: 356 --WSPEVVSLLADAK-FVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
               P VV      K F+  +R     +VL+  K    A   FC+ +   G +      E
Sbjct: 446 SGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDE 505

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470
                 AR   VE+V+        +G++    T    I  Y  + +  +A K   + R  
Sbjct: 506 ------ARSFLVEMVE--------NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE- 550

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
           CG +      +L + L+    K ++  +A +    M+  GI+ D +T++ LM        
Sbjct: 551 CGVLPN---KVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDK 607

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
               +++F  +R  G+ PD + + VLI  + K
Sbjct: 608 VDDAEEIFREMRGKGIAPDVFSYGVLINGFSK 639



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 12/128 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +  Y+SL+  L+K KR  +A + L EM+ +G+ P+  T+   +  +    +     K   
Sbjct: 487 IFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVK 546

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEG 587
            +R+ GV P+  +   LI  YCK             + +  ++ DA T  +L   L+K  
Sbjct: 547 EMRECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKND 606

Query: 588 RRKEAAAV 595
           +  +A  +
Sbjct: 607 KVDDAEEI 614


>gi|242088031|ref|XP_002439848.1| hypothetical protein SORBIDRAFT_09g021220 [Sorghum bicolor]
 gi|241945133|gb|EES18278.1| hypothetical protein SORBIDRAFT_09g021220 [Sorghum bicolor]
          Length = 220

 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 75/155 (48%), Gaps = 2/155 (1%)

Query: 68  DPFIVTHALRSAPNADSALSIME-ALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           D   V   L++ P    A      A  ++  F H++ T  ++  +L ++ R   +  L+ 
Sbjct: 67  DSHTVARVLKTHPPLQKAFLFFRLAATASRTFRHDRFTYTSMIHLLGEAGRVPAMLRLLA 126

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
           ++  +     +  F  +M W + +GD++  +  W E + R++  +  SY   + +    G
Sbjct: 127 EMLRAGVAPDAATFTTVMHWLARAGDVDGAMRVWAEMKARSRP-TVVSYTACVKILFDAG 185

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG 221
           +  EA   FR+++ EG  P  +TYTV+IEHL + G
Sbjct: 186 RAEEARRVFREMVAEGLRPTCKTYTVLIEHLADTG 220



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 6/175 (3%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQP-GYTHDVYALEKMLT 414
           WS     LL+     W +  V +VL+     + A+ FF   A     + HD +    M+ 
Sbjct: 51  WSAARPLLLSLPGLAWDSHTVARVLKTHPPLQKAFLFFRLAATASRTFRHDRFTYTSMIH 110

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI 474
           +L   G V  + RL+A++   G+    +T   ++ +   +   D A++ + + +    P 
Sbjct: 111 LLGEAGRVPAMLRLLAEMLRAGVAPDAATFTTVMHWLARAGDVDGAMRVWAEMKARSRPT 170

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
                ++ Y++ ++ L    R  +A  V  EM+  G+ P  +T++ L+ H A  G
Sbjct: 171 -----VVSYTACVKILFDAGRAEEARRVFREMVAEGLRPTCKTYTVLIEHLADTG 220


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 105/482 (21%), Positives = 197/482 (40%), Gaps = 59/482 (12%)

Query: 162 EYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG 221
           E  +R  + +  +YNI++ +  + GK   A+E    +   G  PN  T  +MI+ L    
Sbjct: 394 EEMKRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQ 453

Query: 222 KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRV 281
           KL+ A  +F  +        +  +  L++G     R D+A SL  +M D G  PG  +  
Sbjct: 454 KLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYT 513

Query: 282 ALER-MQEMGFIQGANEFLREML-----PDKRIKNVRYYEDGSDDDEDENDDNNSGVRIA 335
           +L R   + G  +  ++  +EM+     PD  + N  Y +      E E           
Sbjct: 514 SLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINT-YMDCVFKAGETEKG--------- 563

Query: 336 YGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCW 395
                      +AL   ++         + DA+    + L+  +++   + ET +  F +
Sbjct: 564 -----------RALFREINAH-----GFIPDAR--SYSILIHGLVKAGLANET-YELF-Y 603

Query: 396 VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455
              + G   D +A   ++    + G V    +L+ +++  G      T   +ID      
Sbjct: 604 AMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKID 663

Query: 456 KADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
           + D A   F + ++     +  KL +++YSSL+    K  R  +A  ++EE++  G+ P+
Sbjct: 664 RLDEAYMLFEEAKS-----NGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPN 718

Query: 515 VQTFSGLMYHFALQGDEKIVQKL--FSMVRQNGVEPDAYMFKVLIQAYCKY--------- 563
           V T++ L+   AL   E+I + L  F  ++     P+   + +LI   C+          
Sbjct: 719 VYTWNCLLD--ALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVF 776

Query: 564 ---LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP-SLALRGHIWAVSS 619
              +    L P+  T   +   L K G   EA+ +  R +    +P S +    I  +SS
Sbjct: 777 WQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSS 836

Query: 620 AD 621
           A+
Sbjct: 837 AN 838



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 64/136 (47%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           F  L++ ++  G ++  LS  +E +  +       YN+ +  + K GK   + + F ++ 
Sbjct: 233 FTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMK 292

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
             G +P+  TYT MI  L    +LD A+E+F  L   R    +  Y  ++ G+    +FD
Sbjct: 293 SHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFD 352

Query: 260 EAKSLLNEMRDDGKFP 275
           EA  LL   +  G  P
Sbjct: 353 EAYGLLERQKAKGSIP 368



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 75/162 (46%)

Query: 114 KSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE 173
           K+    + + L  +I++  F+  + ++  L+     +G        +   +++  +L T 
Sbjct: 556 KAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTH 615

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN V+  + K+GK  +A +   ++  +G  P   TY  +I+ L  + +LD A  +F   
Sbjct: 616 AYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEA 675

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               IK     Y  L++GF  V R DEA  ++ E+   G  P
Sbjct: 676 KSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP 717



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 110/267 (41%), Gaps = 22/267 (8%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
           W P + + L+         LV  VL+  K   TA ++F W   Q    H   A   +L +
Sbjct: 75  WGPTLENSLSALGEKPLPELVIGVLKRLKDANTAVNYFQWAEKQTEKVHCPEAYNSLLMV 134

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
           +AR+   + ++R++ ++   G   P S I   I+      K+    +AF   +T+     
Sbjct: 135 MARNTEFDHLERILEEMSLSGFG-PSSNIS--IELVANCVKSRKLREAFDIIQTM----R 187

Query: 476 KFKLMLLYSS---LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
           KFK    +S+   L+  L++ +     + +  +M   G   +V  F+ L+  FA +G   
Sbjct: 188 KFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIRVFAREGRVD 247

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLK 580
               L   ++ N ++ D  ++ V I  + K             + +  LMPD  T   + 
Sbjct: 248 AALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMI 307

Query: 581 KSLWKEGRRKEAAAVEERCEKINDVPS 607
             L K  R  EA  + E+ E+   VP 
Sbjct: 308 GVLCKANRLDEAVELFEQLEQNRKVPC 334



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 85/205 (41%), Gaps = 1/205 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+   L  A   + A SI E +  +   + N  T  +L   L K  R  +  +L   +  
Sbjct: 444 IMIDRLCKAQKLEEACSIFEGM-DDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLD 502

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
              +  ++ + +L++ +   G  E     + E             N  M    K G+  +
Sbjct: 503 CGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEK 562

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
               FR++   G IP++R+Y+++I  LV  G  +   E+F A+        +  Y  +++
Sbjct: 563 GRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVID 622

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP 275
           GF    + ++A  LL EM+  G  P
Sbjct: 623 GFCKSGKVNKAYQLLEEMKVKGHPP 647



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 100/509 (19%), Positives = 195/509 (38%), Gaps = 25/509 (4%)

Query: 78  SAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVS 137
           SA   D A  ++E  K+  +   +    + + T L K +R  E   +  ++      NV 
Sbjct: 347 SAGKFDEAYGLLERQKAKGSIP-SVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVP 405

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
             +  L+      G L   L   ++  +     +  + NI++    K  K  EA   F  
Sbjct: 406 T-YNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEG 464

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + D+   PN+ T++ +I+ L   G++D A  ++  +        +  Y  L+  F    R
Sbjct: 465 MDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGR 524

Query: 258 FDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
            ++   +  EM   G  P   +    ++ + + G  +      RE+     I + R Y  
Sbjct: 525 KEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSI 584

Query: 317 GSDDDEDENDDNNSGVRIAYGVQLKPW-LDPKALANTLDEWSP-----EVVSLLADAKF- 369
                      N +   + Y ++ +   LD  A    +D +       +   LL + K  
Sbjct: 585 LIHGLVKAGLANET-YELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVK 643

Query: 370 -----VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVEL 424
                V T   V   L      + A+  F   A   G   +V     ++    + G ++ 
Sbjct: 644 GHPPTVVTYGSVIDGLAKIDRLDEAYMLF-EEAKSNGIKLNVVVYSSLIDGFGKVGRIDE 702

Query: 425 VDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS 484
              ++ +L   G+     T   ++D    +++ + AL  F   + L  P ++    + YS
Sbjct: 703 AYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQ----ITYS 758

Query: 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544
            L+  L + ++   A    +EM   G+ P+  T++ ++   A  G+      LFS  + N
Sbjct: 759 ILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKAN 818

Query: 545 GVEPDAYMFKVLIQAYCKYLSNSNLMPDA 573
           G  PD+  +  +I+     LS++N   DA
Sbjct: 819 GGIPDSASYNAMIEG----LSSANKAMDA 843



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 42/222 (18%), Positives = 91/222 (40%), Gaps = 21/222 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           GY  +V+    ++ + AR G V+    L+ +++S+ +        + ID +G + K D +
Sbjct: 225 GYEVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMS 284

Query: 461 LKAFHDDRTLCGPISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
            K FH+ ++         LM   + Y+S++  L K  R  +A+ + E++  +  VP    
Sbjct: 285 WKFFHEMKS-------HGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYA 337

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLS-----------N 566
           ++ ++  +   G       L    +  G  P    +  ++    K               
Sbjct: 338 YNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMK 397

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
            + +P+  T  +L   L +EG+   A  + +  E+    P++
Sbjct: 398 RDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNV 439



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 69/179 (38%), Gaps = 1/179 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A  IME L      + N  T + L   L K++  +E       +   K     + +  
Sbjct: 701 DEAYLIMEELMQK-GLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSI 759

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+               W E ++     +T +Y  ++S  AK G   EA   F +    G
Sbjct: 760 LINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANG 819

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
            IP+S +Y  MIE L +  K   A  +F    L      +K  ++L++     E  ++A
Sbjct: 820 GIPDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDALHKAECLEQA 878



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 36/193 (18%), Positives = 81/193 (41%), Gaps = 2/193 (1%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D+ALS+++ +KSN +   +    +       K+ +         ++ S   +   V + +
Sbjct: 247 DAALSLLDEMKSN-SLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTS 305

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           ++     +  L+  +  + +  Q  K+    +YN ++  Y   GK  EA     +   +G
Sbjct: 306 MIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKG 365

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
           +IP+   Y  ++  L    +++ AL +F  +    +      Y IL++      + + A 
Sbjct: 366 SIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVP-TYNILIDMLCREGKLNAAL 424

Query: 263 SLLNEMRDDGKFP 275
            + ++M   G FP
Sbjct: 425 EIRDDMERAGLFP 437


>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
          Length = 987

 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 108/469 (23%), Positives = 187/469 (39%), Gaps = 42/469 (8%)

Query: 99  SHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLS 158
           S N  T   L   L K  R H+ + L+ ++     +     +  ++  Y  SG ++  L 
Sbjct: 281 SLNLHTYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALG 340

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNF-EAVETFRQVIDEGAIPNSRTYTVMIEHL 217
                 Q        +YN +  +Y   G    EA E     I  G  P   T+T +I   
Sbjct: 341 IKALMEQNGCNPDDWTYNSL--IYGLCGGKLDEAEELLNGAIARGFTPTVITFTNLINGY 398

Query: 218 VNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR 277
               ++D AL V S +     K   + Y +L+   +   R  EAK  LNEM  +G  P  
Sbjct: 399 CKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNV 458

Query: 278 AMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAY 336
               ++ +   ++G +  A E  + M  +    N   Y  GS               + Y
Sbjct: 459 VTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTY--GS---------------LIY 501

Query: 337 G-VQLKPWLDPKALANTLDE--WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFF 393
           G +Q K      AL   + E   +P V++        +TT +  +  +H    + A+  F
Sbjct: 502 GLIQDKKLHKAMALITKMQEDGITPGVIT--------YTTLIQGQCKKH--EFDNAFRLF 551

Query: 394 CWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGI 453
             +  Q G T D  A   +   L + G  E     + +    G+ L   T   ++D  G 
Sbjct: 552 -EMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVR---KGVVLTKVTYTSLVD--GF 605

Query: 454 SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP 513
           SK  +    A   ++ +     K  L   YS LL+ L K K+  +A+++L++M  SG+  
Sbjct: 606 SKAGNTDFAAVLIEKMV-NEGCKADL-YTYSVLLQALCKQKKLNEALSILDQMTVSGVKC 663

Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           ++  ++ ++     +G     + LF+ +  +G +P A  + V I +YCK
Sbjct: 664 NIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCK 712



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 86/190 (45%), Gaps = 5/190 (2%)

Query: 87  SIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQW 146
           ++ME    NP+     S ++ L        +  E + L+    +  F    + F NL+  
Sbjct: 343 ALMEQNGCNPDDWTYNSLIYGLC-----GGKLDEAEELLNGAIARGFTPTVITFTNLING 397

Query: 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206
           Y  +  ++  L   +        L  ++Y ++++V  K  +  EA ET  ++   G  PN
Sbjct: 398 YCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPN 457

Query: 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
             TYT +I+    +G + +ALEVF  +        +  Y  L+ G +  ++  +A +L+ 
Sbjct: 458 VVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALIT 517

Query: 267 EMRDDGKFPG 276
           +M++DG  PG
Sbjct: 518 KMQEDGITPG 527



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D+A  + E ++ N   + ++   + L   L KS R  E  + +        +   V + +
Sbjct: 545 DNAFRLFEMMEQN-GLTPDEQAYNVLTDALCKSGRAEEAYSFL---VRKGVVLTKVTYTS 600

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  +S +G+ +       +           +Y++++    K  K  EA+    Q+   G
Sbjct: 601 LVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSG 660

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
              N   YT++I  ++  GK D A  +F+ +     K ++  Y + +  +  + R +EA+
Sbjct: 661 VKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAE 720

Query: 263 SLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREML 303
            L+ EM  DG  P      + +     MG+I  A   L+ M+
Sbjct: 721 HLIGEMERDGVTPDVVTYNIFINGCGHMGYIDRAFSTLKRMV 762



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 110/525 (20%), Positives = 194/525 (36%), Gaps = 63/525 (12%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAK--SQRNHELKTLIGDISSSKFLNVSVNFM 141
           +AL+  E +   P F H  ++  AL  +LA+  +  N++ K ++  IS S         +
Sbjct: 68  TALAFFECVARRPGFRHTAASHAALLQLLARRRAPANYD-KLVLSMISCSGTAEDVREAV 126

Query: 142 NLMQWYSTSGDLELVLST----------------------WNEYRQRAKLLSTESYNIVM 179
           + +Q     G   LVLS                       ++   Q   L  T +YN ++
Sbjct: 127 DAIQAIRRVGGKRLVLSPKCYNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTYNTMI 186

Query: 180 SVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIK 239
             Y K G    A   F  + + G   ++ T   ++        L  A  +   +PLM  +
Sbjct: 187 MAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCR 246

Query: 240 RTSKQYLILVEGFVGVERFDEAKSLLNEM-RDDGKFPGRAMRVALERMQEMGFIQGANEF 298
           R    Y IL++G        EA  L+  M  D          + ++ + + G I  A   
Sbjct: 247 RNEYSYTILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRIHDARGL 306

Query: 299 LREMLPDKRIKNVRYYEDGSD------------------DDEDENDDNNSGVRIAYGVQL 340
           L EM     + +V  Y    D                  +    N D+ +   + YG+  
Sbjct: 307 LDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCG 366

Query: 341 KPWLDPKALAN--TLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAY 398
               + + L N      ++P V++      F       CK  R   +     +       
Sbjct: 367 GKLDEAEELLNGAIARGFTPTVIT------FTNLINGYCKAERIDDALRVKSNMI----- 415

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
                 D+ A   ++ +L +   ++     + ++ ++G+     T   IID Y       
Sbjct: 416 SSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVG 475

Query: 459 AALKAFH-DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
           AAL+ F   +   C P +       Y SL+  L + K+   A+ ++ +M   GI P V T
Sbjct: 476 AALEVFKLMEHEGCHPNA-----WTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVIT 530

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           ++ L+     + +     +LF M+ QNG+ PD   + VL  A CK
Sbjct: 531 YTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCK 575



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 1/151 (0%)

Query: 165 QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
           ++  +L+  +Y  ++  ++K G    A     ++++EG   +  TY+V+++ L    KL+
Sbjct: 588 RKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLN 647

Query: 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVAL 283
            AL +   + +  +K     Y I++   +   + D AKSL NEM   G  P      V +
Sbjct: 648 EALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFI 707

Query: 284 ERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
               ++G I+ A   + EM  D    +V  Y
Sbjct: 708 SSYCKIGRIEEAEHLIGEMERDGVTPDVVTY 738



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 30/184 (16%)

Query: 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR 445
           P TA  FF  VA +PG+ H   +   +L +LAR       D+L+  +             
Sbjct: 66  PATALAFFECVARRPGFRHTAASHAALLQLLARRRAPANYDKLVLSM------------- 112

Query: 446 LIIDFYGISKKADAALKAFHDDRTLCGPISKFKLML---LYSSLLRTLTKCKRDFDAINV 502
             I   G ++    A+ A    R + G     +L+L    Y+  LR+L +    FD    
Sbjct: 113 --ISCSGTAEDVREAVDAIQAIRRVGGK----RLVLSPKCYNLALRSLLR----FDMTEY 162

Query: 503 L----EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           +      ++  G++PD  T++ ++  +  +G   I  + F ++R++G++ D Y    L+ 
Sbjct: 163 MGKLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLL 222

Query: 559 AYCK 562
            YC+
Sbjct: 223 GYCR 226



 Score = 45.8 bits (107), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 16/124 (12%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI--VQKLFSM 540
           Y+S++    K      A+ V + M   G  P+  T+  L+Y   L  D+K+     L + 
Sbjct: 461 YTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIY--GLIQDKKLHKAMALITK 518

Query: 541 VRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGR 588
           ++++G+ P    +  LIQ  CK             +  + L PD     +L  +L K GR
Sbjct: 519 MQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGR 578

Query: 589 RKEA 592
            +EA
Sbjct: 579 AEEA 582



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 45/102 (44%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y I++S   K GK+  A   F ++I  G  P++ TYTV I     +G+++ A  +   +
Sbjct: 667 AYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEM 726

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               +      Y I + G   +   D A S L  M D    P
Sbjct: 727 ERDGVTPDVVTYNIFINGCGHMGYIDRAFSTLKRMVDASCEP 768



 Score = 40.8 bits (94), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 71/175 (40%), Gaps = 1/175 (0%)

Query: 79  APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV 138
           A N D A  ++E +  N     +  T   L   L K ++ +E  +++  ++ S      V
Sbjct: 608 AGNTDFAAVLIEKM-VNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIV 666

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
            +  ++      G  +   S +NE        S  +Y + +S Y K G+  EA     ++
Sbjct: 667 AYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEM 726

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
             +G  P+  TY + I    ++G +D A      +     +     Y +L++ F+
Sbjct: 727 ERDGVTPDVVTYNIFINGCGHMGYIDRAFSTLKRMVDASCEPNCWTYWLLLKHFL 781



 Score = 40.0 bits (92), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 86/214 (40%), Gaps = 17/214 (7%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           ++  AL      + ALSI++ +  +     N      + + + K  ++   K+L  ++ S
Sbjct: 635 VLLQALCKQKKLNEALSILDQMTVS-GVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMIS 693

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           S     +  +   +  Y   G +E       E  +        +YNI ++     G    
Sbjct: 694 SGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMGYIDR 753

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEH-----LVNLGKLDSA-----LEVFSALPLMR--- 237
           A  T ++++D    PN  TY ++++H     L+N   +D++     +E+     L+    
Sbjct: 754 AFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYVDTSGMWNWIELNMVWQLLERMM 813

Query: 238 ---IKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
              +  T   Y  ++ GF    R +EA  LL+ M
Sbjct: 814 KHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHM 847


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 90/437 (20%), Positives = 176/437 (40%), Gaps = 40/437 (9%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           +V F  L+      G     +  ++++       +  +Y  +++   K G+   A   F+
Sbjct: 165 AVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFK 224

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           ++ + G  PN  TY ++I+ L     ++ AL++FS +   RI      Y  L++G     
Sbjct: 225 KMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFR 284

Query: 257 RFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
           R+ EA +LLNEM      P      V ++ + + G +  A    + M       +V  Y 
Sbjct: 285 RWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYS 344

Query: 316 DGSDDDEDENDDNNSGVRIAYGVQLK-PWLDPKALANTL--DEWSPEVVSLLADAKFVWT 372
                             + YG  L+   ++ + L + +      P+  S      +   
Sbjct: 345 S-----------------LMYGYSLRMEIVEARKLFDAMITKGCKPDAFS------YNIL 381

Query: 373 TRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKL 432
            +  CK     K  + A   F  + +Q G T D      ++  L + G +     L   +
Sbjct: 382 IKGYCKA----KRIDEAKQLFNEMIHQ-GLTPDNVNYNTLIHGLCQLGRLREAQDLFKNM 436

Query: 433 RSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK 492
            S+G      T  +++D  G  K+     KAF   R +     K  +  +Y+ L+  + K
Sbjct: 437 HSNGNLPDLFTYSMLLD--GFCKEGYLG-KAFRLFRVMQSTYLKPDIA-MYNILIDAMCK 492

Query: 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG--DEKIVQKLFSMVRQNGVEPDA 550
                DA  +  E+   G++P+VQ ++ ++ +   +G  DE +  + F  +  +G  PD 
Sbjct: 493 FGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEAL--EAFRNMEGDGCPPDE 550

Query: 551 YMFKVLIQAYCKYLSNS 567
           + + V+I+ + +Y   S
Sbjct: 551 FSYNVIIRGFLQYKDES 567



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 88/458 (19%), Positives = 179/458 (39%), Gaps = 49/458 (10%)

Query: 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF-RQVIDEGAIPNSRTY 210
           +++  L+++N    R  L     +  ++S   K G+ + AV +  +Q+   G  P+  T 
Sbjct: 74  NIDDALASFNHMLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTL 133

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
           +++I+   +L ++D A  VFS +  + ++  +  +  L+ G   V +F +A    ++   
Sbjct: 134 SILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEA 193

Query: 271 DGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNN 329
            G  P        +  + ++G    A    ++M       NV                  
Sbjct: 194 SGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNV------------------ 235

Query: 330 SGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPE 387
               + Y + +      K +   LD +S      ++   F + + +  +C   R +K   
Sbjct: 236 ----VTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCN-FRRWKEAS 290

Query: 388 TAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLI 447
              +    +   P    +++    ++  + + G V     +   +   G+     T   +
Sbjct: 291 ALLNEMTSLNIMP----NIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSL 346

Query: 448 IDFYGISKKADAALKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
           +  Y +  +   A K F    T  C P +       Y+ L++   K KR  +A  +  EM
Sbjct: 347 MYGYSLRMEIVEARKLFDAMITKGCKPDA-----FSYNILIKGYCKAKRIDEAKQLFNEM 401

Query: 507 IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--YL 564
           I  G+ PD   ++ L++     G  +  Q LF  +  NG  PD + + +L+  +CK  YL
Sbjct: 402 IHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYL 461

Query: 565 S----------NSNLMPDAATKELLKKSLWKEGRRKEA 592
                      ++ L PD A   +L  ++ K G  K+A
Sbjct: 462 GKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDA 499



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 12/138 (8%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           ++ L+  + K  +  +A  V + M   G+ PDV T+S LMY ++L+ +    +KLF  + 
Sbjct: 308 FNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMI 367

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
             G +PDA+ + +LI+ YCK             + +  L PD      L   L + GR +
Sbjct: 368 TKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLR 427

Query: 591 EAAAVEERCEKINDVPSL 608
           EA  + +      ++P L
Sbjct: 428 EAQDLFKNMHSNGNLPDL 445



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 49/98 (50%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YNI++    K G   +A + F ++  +G +PN + YT +I +L   G LD ALE F  + 
Sbjct: 483 YNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNME 542

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
                     Y +++ GF+  +    A  L+ EMRD G
Sbjct: 543 GDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRG 580



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 96/211 (45%), Gaps = 24/211 (11%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G + D+Y L  ++   +    V+L   + +K+   G++    T   +I+      K   A
Sbjct: 125 GLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQA 184

Query: 461 LKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           ++ F D + + C P      +  Y++++  L K      A  + ++M  +G  P+V T++
Sbjct: 185 VEFFDDFEASGCQPT-----VYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYN 239

Query: 520 GLMYHFALQGDEKIVQK---LFSMVRQNGVEPDAYMFKVLIQAYCKY------------L 564
            L+        +K+V +   +FS ++   + PD + +  LIQ  C +            +
Sbjct: 240 ILIDSLC---KDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEM 296

Query: 565 SNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
           ++ N+MP+  T  +L  ++ KEG+  EA  V
Sbjct: 297 TSLNIMPNIFTFNVLVDAICKEGKVSEAQGV 327



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/219 (20%), Positives = 91/219 (41%), Gaps = 23/219 (10%)

Query: 406 VYALEKMLTILARHG-HVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           +    K+L+ + + G +   V  L  ++   G+     T+ ++ID +   ++ D A   F
Sbjct: 94  IIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLSILIDCFSHLQRVDLAFSVF 153

Query: 465 HDDRTLCGPISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL 521
                    + K  L    + +++L+  L K  +   A+   ++   SG  P V T++ +
Sbjct: 154 S-------KMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTI 206

Query: 522 MYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNL 569
           +      G+      LF  + + G +P+   + +LI + CK            Y+    +
Sbjct: 207 INGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRI 266

Query: 570 MPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
            PD  T   L + L    R KEA+A+      +N +P++
Sbjct: 267 SPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNI 305



 Score = 43.1 bits (100), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 70/185 (37%), Gaps = 4/185 (2%)

Query: 113 AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
            K++R  E K L  ++        +VN+  L+      G L      +        L   
Sbjct: 386 CKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDL 445

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            +Y++++  + K G   +A   FR +      P+   Y ++I+ +   G L  A ++FS 
Sbjct: 446 FTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSE 505

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFI 292
           L +  +    + Y  ++         DEA      M  DG  P       + R    GF+
Sbjct: 506 LFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIR----GFL 561

Query: 293 QGANE 297
           Q  +E
Sbjct: 562 QYKDE 566


>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Brachypodium distachyon]
          Length = 877

 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 108/456 (23%), Positives = 181/456 (39%), Gaps = 54/456 (11%)

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L+G++ +   L   V +  LM W    GDLE + S  +E R+R    + + YN V+    
Sbjct: 316 LLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPPNVQIYNSVIDALC 375

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           K     +A+   +Q+   G  P++ T++ +I  L   G++  A  +        +     
Sbjct: 376 KCRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEAERLLRETTRWELNPNLS 435

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFL---- 299
            Y  L+ GF        A +LL EM + G  P      AL  +  +      +E L    
Sbjct: 436 SYTSLIHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGAL--IHGLVVAGQVSEALLVRE 493

Query: 300 ----REMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDE 355
               R++LPD  I NV                      +  G+  K  L   A  N ++E
Sbjct: 494 KMAARQLLPDANIYNV----------------------LISGLCKKKML--PAARNLIEE 529

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
              + V      K+V+TT L+   +R+ +S + A   F ++  Q G   DV     M+  
Sbjct: 530 MLEQNVH---PDKYVYTT-LIDGFIRN-ESLDEARKIFEFME-QKGIHPDVVGYNAMIKG 583

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFS-TIRLIIDFYGISKKADAALKAFHD-DRTLCGP 473
             + G +      ++ +R  G R+P   T   +I  Y        AL    D  +  C P
Sbjct: 584 YCQFGMMNEAVECMSTMRKVG-RIPDEFTYTTLIGGYAKQGNISGALSLLCDMMKRRCQP 642

Query: 474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVL-EEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
                 ++ YSSL+    K   D DA   L   M   G+ P+V T++ L+   +L   +K
Sbjct: 643 N-----VVAYSSLINGYCKLG-DTDAAECLFGSMESQGLFPNVITYTILI--GSLFKKDK 694

Query: 533 IVQK--LFSMVRQNGVEPDAYMFKVLIQAYCKYLSN 566
           +V+    F  +  N   P+ Y    L+   C  +++
Sbjct: 695 VVRAAMYFEYMLLNQCSPNDYTLHSLVTGLCNSMAS 730



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 14/114 (12%)

Query: 493 CKRD--FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA 550
           C+R      I +L EM   G++P V T+  LM     +GD + +  L S +R+  + P+ 
Sbjct: 305 CRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPPNV 364

Query: 551 YMFKVLIQAYCKYLSNSNLM------------PDAATKELLKKSLWKEGRRKEA 592
            ++  +I A CK  S S  +            PDA T   L   L +EGR +EA
Sbjct: 365 QIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEA 418



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 12/129 (9%)

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
           +Y+S++  L KC+    A+ VL++M   G  PD  TFS L+     +G  +  ++L    
Sbjct: 366 IYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEAERLLRET 425

Query: 542 RQNGVEPDAYMFKVLIQAYC---KYLSNSNLM---------PDAATKELLKKSLWKEGRR 589
            +  + P+   +  LI  +C   + +  SNL+         PD  T   L   L   G+ 
Sbjct: 426 TRWELNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGALIHGLVVAGQV 485

Query: 590 KEAAAVEER 598
            EA  V E+
Sbjct: 486 SEALLVREK 494



 Score = 42.0 bits (97), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 43/224 (19%), Positives = 91/224 (40%), Gaps = 6/224 (2%)

Query: 57  SLSSLLNDRLLDPFI-----VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATV 111
           SL S + +R L P +     V  AL    +A  AL +++ + +      +  T   L + 
Sbjct: 350 SLLSEMRERRLPPNVQIYNSVIDALCKCRSASQALVVLKQMFAG-GCDPDAITFSTLISG 408

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L +  R  E + L+ + +  +      ++ +L+  +   G++ +  +   E  +R     
Sbjct: 409 LCQEGRVQEAERLLRETTRWELNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPD 468

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
             ++  ++      G+  EA+    ++     +P++  Y V+I  L     L +A  +  
Sbjct: 469 VVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAARNLIE 528

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            +    +      Y  L++GF+  E  DEA+ +   M   G  P
Sbjct: 529 EMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHP 572


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 102/519 (19%), Positives = 207/519 (39%), Gaps = 67/519 (12%)

Query: 64  DRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQST---------LH----ALAT 110
           +R L P  V   +R   +  +AL +   +K+   F H   T         LH    A+  
Sbjct: 2   NRALQPKHVAAVIRYQNDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMED 61

Query: 111 VLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLL 170
           VLA+ ++N + K L G             ++ +M+ Y   G ++  ++ +          
Sbjct: 62  VLAEMRKNVDSKMLEGV------------YIGIMRDYGRKGKVQEAVNVFERMDFYDCEP 109

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           S +SYN +M++  + G   +A + + ++ D G  P+  T+T+ ++     G+  +AL + 
Sbjct: 110 SVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLL 169

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEM 289
           + +P    +  +  Y  ++ GF       EA  L +EM   G  P        +  + + 
Sbjct: 170 NNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKK 229

Query: 290 GFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKA- 348
           G +Q + +   +++      N+  +                      G+  K  +D  A 
Sbjct: 230 GNVQESEKLFSKVMKRGVCPNLFTFN-----------------IFIQGLCRKGAIDEAAR 272

Query: 349 -LANTLDE-WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDV 406
            L + + E  +P+V+S        + T L+C   +H K  E   +    V    G   + 
Sbjct: 273 LLESIVSEGLTPDVIS--------YNT-LICGFCKHSKLVEAECYLHKMV--NSGVEPNE 321

Query: 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA--ALKAF 464
           +    ++    + G ++  D+++      G      T   +I+  G+    D   A+  F
Sbjct: 322 FTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLIN--GLCNDGDMNRAMAVF 379

Query: 465 HDDRTLCGPISKFK-LMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
           ++          FK  ++LY++L++ L+K      A+ ++++M+  G  PD+ T++ ++ 
Sbjct: 380 YEAME-----KGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVN 434

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
                G       + +     G  PD + F  LI  YCK
Sbjct: 435 GLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCK 473



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 90/394 (22%), Positives = 163/394 (41%), Gaps = 40/394 (10%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++N ++ V  K G   E+ + F +V+  G  PN  T+ + I+ L   G +D A  +  ++
Sbjct: 218 TFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESI 277

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
               +      Y  L+ GF    +  EA+  L++M + G  P        +    + G +
Sbjct: 278 VSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMM 337

Query: 293 QGANEFLREMLPDKRIKNVRYYE---DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKAL 349
           Q A++ LR+ +    I +   Y    +G  +D     D N  + + Y    K +     L
Sbjct: 338 QNADKILRDAMFKGFIPDEFTYSSLINGLCND----GDMNRAMAVFYEAMEKGFKHSIIL 393

Query: 350 ANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYAL 409
            NTL      V  L      +   +L+  ++ H  SP+       W      Y   V  L
Sbjct: 394 YNTL------VKGLSKQGLVLQALQLMKDMMEHGCSPDI------WT-----YNLVVNGL 436

Query: 410 EKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRT 469
            KM  +   +G   +++  IAK    G      T   +ID Y   +  D A++    D  
Sbjct: 437 CKMGCLSDANG---ILNDAIAK----GCIPDIFTFNTLIDGYCKQRNMDKAIEIL--DTM 487

Query: 470 LCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
           L   I+    ++ Y++LL  L K ++  + ++  + M+  G  P++ T++ L+  F    
Sbjct: 488 LSHGITPD--VITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFC--K 543

Query: 530 DEKIVQ--KLFSMVRQNGVEPDAYMFKVLIQAYC 561
           D K+ +  +LF  ++  G+ PD      LI   C
Sbjct: 544 DRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLC 577



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 82/402 (20%), Positives = 156/402 (38%), Gaps = 44/402 (10%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN +++ + K G    A +  R  + +G IP+  TY+ +I  L N G ++ A+ VF   
Sbjct: 323 TYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEA 382

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
                K +   Y  LV+G        +A  L+ +M + G  P      + +  + +MG +
Sbjct: 383 MEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCL 442

Query: 293 QGANEFLREMLPDKRIKNV--------RYYEDGSDDDEDENDDN--NSGVR---IAYGVQ 339
             AN  L + +    I ++         Y +  + D   E  D   + G+    I Y   
Sbjct: 443 SDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTL 502

Query: 340 LKPWLDPKALANTLDEW--------SPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWH 391
           L      + L N +D +        +P +++     +     R V + +  FK  +T   
Sbjct: 503 LNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTR-- 560

Query: 392 FFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFST--IRLIID 449
                    G T D+  L  ++  L  +G ++    L   +  +  +  +ST    ++I+
Sbjct: 561 ---------GLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKE-YKFSYSTAIFNIMIN 610

Query: 450 FYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD-AINVLEEMI 507
            +        A K FH    + C P   +   ++  S  +T      + D A   L E I
Sbjct: 611 AFCEKLNVSMAEKLFHKMGGSDCAP-DNYTYRVMIDSYCKT-----GNIDLAHTFLLENI 664

Query: 508 FSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
             G+VP   T   ++    +         + +++ QNG+ P+
Sbjct: 665 SKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPE 706



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 98/248 (39%), Gaps = 21/248 (8%)

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS- 434
           V  V+R+   P  A   F  V  + G+ H +   + M+  L  HG  E ++ ++A++R  
Sbjct: 10  VAAVIRYQNDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKN 69

Query: 435 -DGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTK 492
            D   L    I ++ D YG   K   A+  F   D   C P  +      Y++++  L +
Sbjct: 70  VDSKMLEGVYIGIMRD-YGRKGKVQEAVNVFERMDFYDCEPSVQS-----YNAIMNILVE 123

Query: 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYM 552
                 A  V   M   GI PDV T +  M  F + G      +L + +   G E +A  
Sbjct: 124 YGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVS 183

Query: 553 FKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCE 600
           +  +I  + K             +    + PD  T   L   L K+G  +E+  +  +  
Sbjct: 184 YCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVM 243

Query: 601 KINDVPSL 608
           K    P+L
Sbjct: 244 KRGVCPNL 251



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 69/428 (16%), Positives = 160/428 (37%), Gaps = 43/428 (10%)

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
           N     N+ T + +     K+        ++ D     F+     + +L+      GD+ 
Sbjct: 314 NSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMN 373

Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
             ++ + E  ++    S   YN ++   +K G   +A++  + +++ G  P+  TY +++
Sbjct: 374 RAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVV 433

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
             L  +G L  A  + +             +  L++G+      D+A  +L+ M   G  
Sbjct: 434 NGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGIT 493

Query: 275 PGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRI 334
           P                +   N  L  +   +++ NV       D  +   +   +   I
Sbjct: 494 PD---------------VITYNTLLNGLCKARKLDNV------VDTFKAMLEKGCTPNII 532

Query: 335 AYGVQLKPWLDPKALANTLDEW--------SPEVVSLLADAKFVWTTRLVCKVLRHFKSP 386
            Y + ++ +   + ++  ++ +        +P++V+L           L+C +  +    
Sbjct: 533 TYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCT---------LICGLCSN-GEL 582

Query: 387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
           + A+  F  +  +  +++       M+       +V + ++L  K+          T R+
Sbjct: 583 DKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRV 642

Query: 447 IIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
           +ID Y  +   D A   F  +    G +  F        +L  L    R  +A+ ++  M
Sbjct: 643 MIDSYCKTGNIDLA-HTFLLENISKGLVPSFTTC---GKVLNCLCVTHRLSEAVVIINLM 698

Query: 507 IFSGIVPD 514
           + +GIVP+
Sbjct: 699 VQNGIVPE 706



 Score = 46.2 bits (108), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 93/237 (39%), Gaps = 61/237 (25%)

Query: 377 CKVLRHFKSPET---AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
           C V+  F        A+H F  +  Q G   D+    K++ +L + G+V+  ++L +K+ 
Sbjct: 185 CAVISGFYKENCQIEAYHLFDEMLKQ-GICPDILTFNKLIHVLCKKGNVQESEKLFSKVM 243

Query: 434 SDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKC 493
             G+     T  + I   G+ +K               G I                   
Sbjct: 244 KRGVCPNLFTFNIFIQ--GLCRK---------------GAID------------------ 268

Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK---LFSMVRQNGVEPDA 550
               +A  +LE ++  G+ PDV +++ L+  F      K+V+    L  MV  +GVEP+ 
Sbjct: 269 ----EAARLLESIVSEGLTPDVISYNTLICGFCKH--SKLVEAECYLHKMV-NSGVEPNE 321

Query: 551 YMFKVLIQAYCK--YLSNSN----------LMPDAATKELLKKSLWKEGRRKEAAAV 595
           + +  +I  +CK   + N++           +PD  T   L   L  +G    A AV
Sbjct: 322 FTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAV 378


>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
 gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
 gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
          Length = 583

 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 69/131 (52%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F +++  Y  +G LE  ++ +N+      + +T +YN++++ Y K G    AVE ++Q
Sbjct: 323 VTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQ 382

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +      P+  T++ +I+     G+LD AL ++S +   RI+     + I++       R
Sbjct: 383 MTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNR 442

Query: 258 FDEAKSLLNEM 268
            DEA  LLNE+
Sbjct: 443 SDEAIGLLNEL 453



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/231 (20%), Positives = 101/231 (43%), Gaps = 28/231 (12%)

Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK-----K 456
           Y+ DV++   ++  + R G V+    L+ ++   G      T  +++D  G+ +     +
Sbjct: 247 YSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVD--GLCRTNEVSR 304

Query: 457 ADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
               L+    D  +C P      ++ ++S++    K  +  DA+ V  +M+ SGI+P+  
Sbjct: 305 GHEVLRRLQRD-GVCMPN-----VVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTV 358

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------L 564
           T++ L+  +   GD     +++  + +    PD   F  LI  YC+             +
Sbjct: 359 TYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDM 418

Query: 565 SNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIW 615
           +   + P+  T  ++  SL K+ R  EA  +     ++N  P +A +  I+
Sbjct: 419 AQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLL---NELNLRPDIAPQAFIY 466



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 1/139 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F +L+  Y   G L+  L  W++  Q     +  +++I++    K  ++ EA+    +
Sbjct: 393 VTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNE 452

Query: 198 V-IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           + +     P +  Y  +I+ L   GK+D A  +   +     +     Y IL+ G+    
Sbjct: 453 LNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKS 512

Query: 257 RFDEAKSLLNEMRDDGKFP 275
           R  EA    +EM + G  P
Sbjct: 513 RISEAIMFFHEMVEAGCSP 531



 Score = 45.8 bits (107), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 85/195 (43%), Gaps = 9/195 (4%)

Query: 84  SALSIMEALKSNP-NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           SAL++  AL  +P + + +  +   +  VL +S R  +   L   +++    +    F++
Sbjct: 125 SALAVFTALHCSPLSITPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLS 184

Query: 143 LMQWYSTSGDL----ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF-RQ 197
            +    T  +L      +LS  +E+  R +     +YN +MS     G+  + V  F R 
Sbjct: 185 FLVSSCTCANLLDASATLLSKASEFGCRVE---AYAYNKLMSSLIGRGRVHDVVALFERW 241

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + D    P+  ++ V+I+ +  +G++  ALE+   +        +  + ILV+G      
Sbjct: 242 IQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNE 301

Query: 258 FDEAKSLLNEMRDDG 272
                 +L  ++ DG
Sbjct: 302 VSRGHEVLRRLQRDG 316


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 113/541 (20%), Positives = 193/541 (35%), Gaps = 101/541 (18%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLL-STESYNIVMSVYAKTGKNFEAVETF 195
           ++ + N+M    +   L+  L  + E  +         +Y+ ++    K+GK  +A    
Sbjct: 184 AITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLV 243

Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
             ++ +G  PN  TY+ ++  L   GKLD A  +   +           Y  +++G   +
Sbjct: 244 EAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKL 303

Query: 256 ERFDEAKSLLNEMRDDGKFPGRAMRVAL-----------------ERMQEMGF------- 291
            R DEA  LL EM D G  P       L                 E M E G+       
Sbjct: 304 GRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTY 363

Query: 292 ------------IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQ 339
                       ++ A + L  M+    + NV  Y           +   +G+  A  V 
Sbjct: 364 NSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSY-----------NTVIAGLCKATKVH 412

Query: 340 LKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQ 399
               L  + L+N      P++V+      F      +CK  R     + A+  F  +  +
Sbjct: 413 EGVLLLEQMLSN---NCVPDIVT------FNTIIDAMCKTYR----VDIAYELFNLIQ-E 458

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKL-RSDGMRLPFSTIRLIIDFYGISKKAD 458
            G T ++     ++  L +    +  + L+ ++ R  G      T   +ID    SK+ D
Sbjct: 459 SGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVD 518

Query: 459 AALKAF---------HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS 509
            A K F          DD T             YS ++ +L K +   +A NVLE M+ +
Sbjct: 519 RAYKLFLQMLSDGLAPDDVT-------------YSIVISSLCKWRFMDEANNVLELMLKN 565

Query: 510 GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------- 562
           G  P   T+  L+  F   G+     ++  ++   G  PD   F + I    K       
Sbjct: 566 GFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQA 625

Query: 563 -----YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA----LRGH 613
                 +  + L+PD  T   L K      R ++A  + E   +    P  A    L GH
Sbjct: 626 GELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLVGH 685

Query: 614 I 614
           +
Sbjct: 686 L 686



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 93/489 (19%), Positives = 187/489 (38%), Gaps = 46/489 (9%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           +D+ L   E  K+ P    +  T + +   L+KS R  +   L+ ++  + F     ++ 
Sbjct: 27  SDAVLHFREMSKTCP---PDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYN 83

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            ++  +  +  +E  L    +   R       SY  V++   K  +  EA     ++I  
Sbjct: 84  TVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQR 143

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G  PN  TY  +++    +G LD A+E+   +     +  +  Y  ++ G     + D A
Sbjct: 144 GCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSA 203

Query: 262 KSLLNEMRDDGKFPGRAMRVA--LERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSD 319
             L  EM + G  P      +  ++ + + G +  A   +  M+      NV  Y     
Sbjct: 204 LQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYS---- 259

Query: 320 DDEDENDDNNSGVRIAYGVQLKPWLD-PKALAN--TLDEWSPEVVS--LLADAKFVWTTR 374
                         + +G+     LD   AL    T    SP +V+   + D        
Sbjct: 260 -------------SLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGH------ 300

Query: 375 LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
             CK+ R     + A+H         G   +V     +L    + G  E    L+  +  
Sbjct: 301 --CKLGR----IDEAYHLL-EEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVE 353

Query: 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKC 493
            G      T   ++D +    + + A +      +  C P      ++ Y++++  L K 
Sbjct: 354 KGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPN-----VVSYNTVIAGLCKA 408

Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
            +  + + +LE+M+ +  VPD+ TF+ ++          I  +LF++++++G  P+   +
Sbjct: 409 TKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTY 468

Query: 554 KVLIQAYCK 562
             L+   CK
Sbjct: 469 NSLVHGLCK 477



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 94/496 (18%), Positives = 192/496 (38%), Gaps = 39/496 (7%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + H L S    DSAL + + ++ + +   +  T   +   L KS +  +   L+  + S 
Sbjct: 190 IMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSK 249

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
                 V + +L+     +G L+   +      +     +  +YN ++  + K G+  EA
Sbjct: 250 GCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEA 309

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
                +++D G  PN  TYTV+++     GK + A+ +   +           Y  L++ 
Sbjct: 310 YHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDM 369

Query: 252 FVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKN 310
           F   +  + A  LL+ M   G  P   +    +  + +   +      L +ML +  + +
Sbjct: 370 FCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPD 429

Query: 311 VRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDE--WSPEVVSLLADAK 368
           +  +    D            V IAY            L N + E   +P +V+      
Sbjct: 430 IVTFNTIID-----AMCKTYRVDIAY-----------ELFNLIQESGCTPNLVT------ 467

Query: 369 FVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRL 428
           +      +CK  R F   E   +    +  + G + D+     ++  L +   V+   +L
Sbjct: 468 YNSLVHGLCKS-RRFDQAE---YLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKL 523

Query: 429 IAKLRSDGMRLPFSTIRLIIDF---YGISKKADAALKAFHDDRTLCGPISKFKLMLLYSS 485
             ++ SDG+     T  ++I     +    +A+  L+    +    G I+       Y +
Sbjct: 524 FLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAIT-------YGT 576

Query: 486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
           L+    K      A+ +L+ ++  G  PDV TFS  +   + +G  +   +L   + + G
Sbjct: 577 LIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAG 636

Query: 546 VEPDAYMFKVLIQAYC 561
           + PD   +  L++ +C
Sbjct: 637 LVPDTVTYNTLLKGFC 652



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 19/224 (8%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           Q G   +V     ++    R G ++    L+ K+   G R    T   I+      +K D
Sbjct: 142 QRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLD 201

Query: 459 AALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
           +AL+ F +  +   C P      +  YS+++ +L K  +  DA  ++E M+  G  P+V 
Sbjct: 202 SALQLFKEMEESGSCPPD-----VFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVV 256

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------L 564
           T+S L++     G       L   + ++G  P+   +  +I  +CK             +
Sbjct: 257 TYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEM 316

Query: 565 SNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
            +    P+  T  +L  +  K G+ ++A  + E   +   VP+L
Sbjct: 317 VDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNL 360



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 108/254 (42%), Gaps = 19/254 (7%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVT-----HALRSAPNADSALSIMEALKSNP 96
           +ID++    R + +  L +L+ +    P +VT     H L  +   D A  ++  +    
Sbjct: 436 IIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQ 495

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTL----IGDISSSKFLNVSVNFMNLMQWY---ST 149
             S +  T + +   L KS+R      L    + D  +   +  S+   +L +W      
Sbjct: 496 GCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEA 555

Query: 150 SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRT 209
           +  LEL+L   N +   A      +Y  ++  + KTG   +A+E  + ++ +G+ P+  T
Sbjct: 556 NNVLELMLK--NGFDPGAI-----TYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVT 608

Query: 210 YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
           +++ I+ L   G+L  A E+   +    +   +  Y  L++GF    R ++A  L   MR
Sbjct: 609 FSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMR 668

Query: 270 DDGKFPGRAMRVAL 283
             G  P  A    L
Sbjct: 669 QCGCEPDNATYTTL 682



 Score = 40.4 bits (93), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 13/128 (10%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++++  L K  +  +A  V+++MI  G  P+V T+  L+  F   GD     +L   + 
Sbjct: 117 YTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMT 176

Query: 543 QNGVEPDAYMFKVLIQAYC-------------KYLSNSNLMPDAATKELLKKSLWKEGRR 589
           + G  P+A  +  ++   C             +   + +  PD  T   +  SL K G+ 
Sbjct: 177 ERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKV 236

Query: 590 KEAAAVEE 597
            +A  + E
Sbjct: 237 DDACRLVE 244


>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
 gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
          Length = 664

 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 103/253 (40%), Gaps = 50/253 (19%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
           WS E+ S L       +     +VLR   SP  A+ FF W A + G+ HD  +   ML I
Sbjct: 10  WSTELESSLFSLSPSISKTTFFQVLRFIASPPKAFEFFNW-ASRNGFAHDSRSYFMMLDI 68

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
           L R+G++ +    +                     + I ++++ ++K   +DR  C    
Sbjct: 69  LGRNGNLNIARNFL---------------------FSIERRSNGSVKI--EDR-FC---- 100

Query: 476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ 535
                   ++LLR+        +AI +   M  SG+ P V TF+ L+     +G   +  
Sbjct: 101 --------NTLLRSYGNAGLFNEAIKLFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAH 152

Query: 536 KLF-SMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKS 582
            +F  M    GV PD Y F +LI+ +C            K +S  N  PD  T   L   
Sbjct: 153 SVFDEMCGTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDG 212

Query: 583 LWKEGRRKEAAAV 595
           L + G+ + A  V
Sbjct: 213 LCRAGKVRIAHNV 225



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 31/147 (21%), Positives = 66/147 (44%), Gaps = 10/147 (6%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF-- 195
           V +  L++ Y    +++  L  + E   R    +  +YN ++    +  K F+ ++    
Sbjct: 241 VTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNTLIKGLCEVQK-FDKIKEILG 299

Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
             V   G +P++ TY  ++    + G  D AL++F  +  ++++  S  Y +L+      
Sbjct: 300 GAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVLIRNLCQR 359

Query: 256 ERFDEAKSLLNE-------MRDDGKFP 275
             F+ A+ L ++       +RDDG  P
Sbjct: 360 GDFERAEQLFDKLSDEDILLRDDGCTP 386



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 16/135 (11%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA-LQGDEKIVQKLFSMV 541
           Y++L+R     +   +A+ V EEM+  G+ P+  T++ L+     +Q  +KI + L   V
Sbjct: 243 YTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNTLIKGLCEVQKFDKIKEILGGAV 302

Query: 542 RQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRR 589
              G  PD   +  L+ A C            K +    + PD+AT  +L ++L + G  
Sbjct: 303 GGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDF 362

Query: 590 KEAAAVEERCEKIND 604
           + A   E+  +K++D
Sbjct: 363 ERA---EQLFDKLSD 374


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 89/447 (19%), Positives = 174/447 (38%), Gaps = 33/447 (7%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL 143
           SAL+++  ++   +   N     A+   L K  R+ + + L  ++           + ++
Sbjct: 237 SALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSM 296

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
           +  + +SG          E  +R       +YN +++ + K GK FEA E + +++  G 
Sbjct: 297 IVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGI 356

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL---ILVEGFVGVERFDE 260
           IPN+ TY+ MI+      +LD+A  +F    LM  K  S   +    L++G+ G +R D+
Sbjct: 357 IPNTITYSSMIDGFCKQNRLDAAEHMFY---LMATKGCSPNLITFNTLIDGYCGAKRIDD 413

Query: 261 AKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSD 319
              LL+EM + G           +     +G +  A + L+EM+      ++   +   D
Sbjct: 414 GMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLD 473

Query: 320 DDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLD----EWSPEVVSLLADAKFVWTTRL 375
              D     ++        + K  LD     N ++     ++  +  L+ + KF+    L
Sbjct: 474 GLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEEL 533

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
                      E   H         G   D      M+  L +   ++   ++   + S 
Sbjct: 534 Y----------EEMPH--------RGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSK 575

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR 495
                  T   +I+ Y  + + D  L+ F +     G        + Y +L+    K   
Sbjct: 576 SFSPNVVTFTTLINGYCKAGRVDDGLELFCE----MGRRGIVANAITYITLICGFRKVGN 631

Query: 496 DFDAINVLEEMIFSGIVPDVQTFSGLM 522
              A+++ +EMI SG+ PD  T   ++
Sbjct: 632 INGALDIFQEMISSGVYPDTITIRNML 658



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 111/523 (21%), Positives = 194/523 (37%), Gaps = 68/523 (13%)

Query: 119 HELKTL------IGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
           HE+K L        D+  S+ L   V+F  LM         +LV+S + +  ++      
Sbjct: 55  HEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDI 114

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            S+ I++  +    K   A+ TF ++   G  P+  T+  ++  L    ++  AL +F  
Sbjct: 115 YSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQ 174

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGF 291
           +     +     +  L+ G     R  EA +LL+ M +DG  P +      ++ M + G 
Sbjct: 175 MFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGD 234

Query: 292 IQGANEFLREMLPDKRI-KNVRYYE---DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPK 347
              A   LR+M     I  NV  Y    D    D   +D  N          L   +  K
Sbjct: 235 TVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQN----------LFTEMQEK 284

Query: 348 ALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY 407
            +   L  ++  +V   +  ++    +L+ ++L    SP                  DV 
Sbjct: 285 GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISP------------------DVV 326

Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDD 467
               ++    + G     + L  ++   G+     T   +ID +    + DAA   F+  
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM 386

Query: 468 RTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
            T  C P      ++ +++L+      KR  D + +L EM  +G+V D  T++ L++ F 
Sbjct: 387 ATKGCSPN-----LITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFY 441

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNS------- 567
           L GD      L   +  +G+ PD      L+   C            K +  S       
Sbjct: 442 LVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDAS 501

Query: 568 ----NLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
                + PD  T  +L   L  EG+  EA  + E       VP
Sbjct: 502 HPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVP 544



 Score = 39.7 bits (91), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 35/80 (43%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+  L    +  +A  + EEM   GIVPD  T+S ++     Q       ++F  + 
Sbjct: 514 YNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMG 573

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
                P+   F  LI  YCK
Sbjct: 574 SKSFSPNVVTFTTLINGYCK 593


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 89/447 (19%), Positives = 174/447 (38%), Gaps = 33/447 (7%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL 143
           SAL+++  ++   +   N     A+   L K  R+ + + L  ++           + ++
Sbjct: 237 SALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSM 296

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
           +  + +SG          E  +R       +YN +++ + K GK FEA E + +++  G 
Sbjct: 297 IVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGI 356

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL---ILVEGFVGVERFDE 260
           IPN+ TY+ MI+      +LD+A  +F    LM  K  S   +    L++G+ G +R D+
Sbjct: 357 IPNTITYSSMIDGFCKQNRLDAAEHMFY---LMATKGCSPNLITFNTLIDGYCGAKRIDD 413

Query: 261 AKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSD 319
              LL+EM + G           +     +G +  A + L+EM+      ++   +   D
Sbjct: 414 GMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLD 473

Query: 320 DDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLD----EWSPEVVSLLADAKFVWTTRL 375
              D     ++        + K  LD     N ++     ++  +  L+ + KF+    L
Sbjct: 474 GLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEEL 533

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
                      E   H         G   D      M+  L +   ++   ++   + S 
Sbjct: 534 Y----------EEMPH--------RGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSK 575

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR 495
                  T   +I+ Y  + + D  L+ F +     G        + Y +L+    K   
Sbjct: 576 SFSPNVVTFTTLINGYCKAGRVDDGLELFCE----MGRRGIVANAITYITLICGFRKVGN 631

Query: 496 DFDAINVLEEMIFSGIVPDVQTFSGLM 522
              A+++ +EMI SG+ PD  T   ++
Sbjct: 632 INGALDIFQEMISSGVYPDTITIRNML 658



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 111/523 (21%), Positives = 194/523 (37%), Gaps = 68/523 (13%)

Query: 119 HELKTL------IGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
           HE+K L        D+  S+ L   V+F  LM         +LV+S + +  ++      
Sbjct: 55  HEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDI 114

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            S+ I++  +    K   A+ TF ++   G  P+  T+  ++  L    ++  AL +F  
Sbjct: 115 YSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQ 174

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGF 291
           +     +     +  L+ G     R  EA +LL+ M +DG  P +      ++ M + G 
Sbjct: 175 MFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGD 234

Query: 292 IQGANEFLREMLPDKRI-KNVRYYE---DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPK 347
              A   LR+M     I  NV  Y    D    D   +D  N          L   +  K
Sbjct: 235 TVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQN----------LFTEMQEK 284

Query: 348 ALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY 407
            +   L  ++  +V   +  ++    +L+ ++L    SP                  DV 
Sbjct: 285 GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISP------------------DVV 326

Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDD 467
               ++    + G     + L  ++   G+     T   +ID +    + DAA   F+  
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM 386

Query: 468 RTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
            T  C P      ++ +++L+      KR  D + +L EM  +G+V D  T++ L++ F 
Sbjct: 387 ATKGCSPN-----LITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFY 441

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNS------- 567
           L GD      L   +  +G+ PD      L+   C            K +  S       
Sbjct: 442 LVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDAS 501

Query: 568 ----NLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
                + PD  T  +L   L  EG+  EA  + E       VP
Sbjct: 502 HPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVP 544



 Score = 39.7 bits (91), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 35/80 (43%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+  L    +  +A  + EEM   GIVPD  T+S ++     Q       ++F  + 
Sbjct: 514 YNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMG 573

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
                P+   F  LI  YCK
Sbjct: 574 SKSFSPNVVTFTTLINGYCK 593


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 86/175 (49%)

Query: 101  NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
            N  T + + + L KS   ++   L  ++ S  F      +  L+     +G  E  +  +
Sbjct: 865  NAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIF 924

Query: 161  NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
             E        ++  YNI+++ + K+G+   A E F++++ EG  P+ ++YT+++E L   
Sbjct: 925  EEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCIT 984

Query: 221  GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            G++D A++ F  L L  +   +  Y  ++ G     R DEA SL +EM++ G  P
Sbjct: 985  GRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISP 1039



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 109/544 (20%), Positives = 207/544 (38%), Gaps = 71/544 (13%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           V   L+S  + +SA S  + +    NF H     + +  +L + QR  E    + D+   
Sbjct: 101 VMTILKSISDPNSAFSYFKIVSQLTNFVHTTDACNYMLEIL-REQRRIEDMVFVFDLMQK 159

Query: 132 KFLNVSVN-FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           K +  ++  +M + +  S  G +        +  +   +L+  SYN ++ +      N E
Sbjct: 160 KVIYRNLTTYMTIFKALSIKGGIGRAPFALRKMTEVGFILNAYSYNGLIHLLLPGFCN-E 218

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A++ ++++I EG  P+ +TY+ ++  L   G     + +   +  + ++     Y I + 
Sbjct: 219 ALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIR 278

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIK 309
                 R D+A  +  EM D+G  P      V ++ +   G +  A E   +M       
Sbjct: 279 ALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKM------- 331

Query: 310 NVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT--------LDEWSPEVV 361
                             ++S  R+ Y   +  +     L           +D ++P+VV
Sbjct: 332 ---------------RASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVV 376

Query: 362 SLLADAKFVWTTRLVCK---VLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILAR 418
           +      +      +CK   V R F   +        V    G   +++    M+  L +
Sbjct: 377 T------YTILIEALCKSGDVDRAFDMLD--------VMTTKGIFPNLHTYNTMICGLLK 422

Query: 419 HGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH--DDRTLCGPISK 476
              ++    L+  + S G++    +  L ID+YG S     A+  F     R +   I+ 
Sbjct: 423 ARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAA 482

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
                  ++ L TL +  R  +A ++  ++   G+ PD  T++ LM  ++  G      +
Sbjct: 483 C------NASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQ 536

Query: 537 LFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLW 584
           L S +   G EPD  +   LI    K             L N  L P   T  +L   L 
Sbjct: 537 LLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLG 596

Query: 585 KEGR 588
           KEG+
Sbjct: 597 KEGK 600



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 97/467 (20%), Positives = 189/467 (40%), Gaps = 70/467 (14%)

Query: 174  SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
            +YNI+++   K GK  +A+E F  + + G  PN+ T+  +++ L     +D AL++F  +
Sbjct: 587  TYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRM 646

Query: 234  PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF------------PG----- 276
             +M        Y  ++ G +   R D A    ++M+   KF            PG     
Sbjct: 647  TMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQMK---KFLSPDYVTLCTLIPGVVRHG 703

Query: 277  ---RAMRVALERMQEMGFIQGANEFLREM----LPDKRIKNVRYYEDGSDDDEDENDDNN 329
                A++V +E + +   +Q  ++F  E+    L +  I+    + +    +    DD+ 
Sbjct: 704  RVEDAIKVVMEFVHQ-ACLQTNSQFWGELMECILTEAEIEEAISFAEILVCNSVCQDDHV 762

Query: 330  SGVRIAYGVQLKPWLDPKALANTLDEWS------PEVVSLLADAKFVWTTRLVCKVLRHF 383
                I    + K  LD +   N  D+++      P + S       +  +    K L  F
Sbjct: 763  MLPLIKVLCKRKKALDAQ---NVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELF 819

Query: 384  KSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI---AKLRSDGMRLP 440
            +  ++A        +   +T+++        +L  HG  + +++L    +++RS G    
Sbjct: 820  EDMKSAG------THPNNFTYNL--------LLDAHGKSKRINKLYDLYSEMRSRGCEPN 865

Query: 441  FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAI 500
              T  +II     S   + AL  +++   + G  S       Y  L+  L K  R   A+
Sbjct: 866  AITHNIIISALVKSNNLNKALDLYYE--LMSGDFSPTPCT--YGPLIDGLLKAGRSEQAM 921

Query: 501  NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
             + EEM+  G  P+   ++ L+  F   G+     +LF  + + G+ PD   + +L++  
Sbjct: 922  KIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECL 981

Query: 561  C------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
            C            + L  + L PD  +   +   L K  R  EA ++
Sbjct: 982  CITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSL 1028



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 6/235 (2%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I   AL  A   D A  I + +  +     +  T   L   L  + +  + K L   + +
Sbjct: 275 ICIRALGRARRIDDAWGIFKEM-DDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRA 333

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           S      V ++ LM  +   GDLE V   WNE           +Y I++    K+G    
Sbjct: 334 SSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDR 393

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A +    +  +G  PN  TY  MI  L+   +LD ALE+   +  + +K T+  Y++ ++
Sbjct: 394 AFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFID 453

Query: 251 GFVGVERFDEAKSL--LNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREM 302
            + G +  D AK++     M+  G  P   A   +L  + E G I  A +   ++
Sbjct: 454 -YYG-KSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDL 506



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 89/209 (42%), Gaps = 18/209 (8%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTL 470
           ++  L R G    +  L+ +++S G+R    T  + I   G +++ D A   F + D   
Sbjct: 241 LMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEG 300

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
           CGP      ++ Y+ L+  L    +   A  +  +M  S   PD  T+  LM  F   GD
Sbjct: 301 CGPD-----VITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGD 355

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKEL 578
            + V++ ++ +  +G  PD   + +LI+A CK             ++   + P+  T   
Sbjct: 356 LETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNT 415

Query: 579 LKKSLWKEGRRKEAAAVEERCEKINDVPS 607
           +   L K  R  EA  + E  E +   P+
Sbjct: 416 MICGLLKARRLDEALELLENMESLGVKPT 444



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 74/146 (50%), Gaps = 6/146 (4%)

Query: 416  LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR-TLCGPI 474
              + G ++    L  K+  +G+R    +  ++++   I+ + D A++ F + + T   P 
Sbjct: 946  FGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPD 1005

Query: 475  SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
            +     + Y+ ++  L K +R  +A+++  EM   GI PD+ T++ L+ H  + G   + 
Sbjct: 1006 T-----VSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVA 1060

Query: 535  QKLFSMVRQNGVEPDAYMFKVLIQAY 560
             K++  ++  G+EP  + +  LI+ +
Sbjct: 1061 VKMYEELQLVGLEPSVFTYNALIRGH 1086



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 79/163 (48%), Gaps = 1/163 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+  AL  + + D A  +++ + +   F  N  T + +   L K++R  E   L+ ++ S
Sbjct: 380 ILIEALCKSGDVDRAFDMLDVMTTKGIFP-NLHTYNTMICGLLKARRLDEALELLENMES 438

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                 + +++  + +Y  SGD    + T+   ++R  + S  + N  +   A+TG+  E
Sbjct: 439 LGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISE 498

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           A + F  +   G  P+S TY ++++     G++D A ++ S +
Sbjct: 499 AEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEM 541



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 104/241 (43%), Gaps = 10/241 (4%)

Query: 42   LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNP 96
            L+D+   + R N    L S +  R  +P  +TH     AL  + N + AL +   L S  
Sbjct: 837  LLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSG- 895

Query: 97   NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
            +FS    T   L   L K+ R+ +   +  ++        SV +  L+  +  SG+++  
Sbjct: 896  DFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFA 955

Query: 157  LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
               + +  +       +SY I++     TG+  EAV+ F ++   G  P++ +Y  +I  
Sbjct: 956  CELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIING 1015

Query: 217  LVNLGKLDSALEVFSALPLMRIKRTSKQY--LILVEGFVGVERFDEAKSLLNEMRDDGKF 274
            L    +LD AL +FS +    I      Y  LIL  G  G  + D A  +  E++  G  
Sbjct: 1016 LGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAG--KVDVAVKMYEELQLVGLE 1073

Query: 275  P 275
            P
Sbjct: 1074 P 1074



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/234 (19%), Positives = 103/234 (44%), Gaps = 3/234 (1%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           + A+S  E L  N +   +   +  L  VL K ++  + + +    + +  ++ ++   N
Sbjct: 742 EEAISFAEILVCN-SVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYN 800

Query: 143 -LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            LM     S   E  L  + + +      +  +YN+++  + K+ +  +  + + ++   
Sbjct: 801 CLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSR 860

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G  PN+ T+ ++I  LV    L+ AL+++  L       T   Y  L++G +   R ++A
Sbjct: 861 GCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQA 920

Query: 262 KSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
             +  EM D G  P   +  + +    + G I  A E  ++M+ +    +++ Y
Sbjct: 921 MKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSY 974



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 95/235 (40%), Gaps = 29/235 (12%)

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVE----LVDRLIAK 431
           V  +L+    P +A+ +F  V+    + H   A   ML IL     +E    + D +  K
Sbjct: 101 VMTILKSISDPNSAFSYFKIVSQLTNFVHTTDACNYMLEILREQRRIEDMVFVFDLMQKK 160

Query: 432 LRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLT 491
           +    +   + TI   +   G   +A  AL+   +   +    S       Y+ L+  L 
Sbjct: 161 VIYRNLT-TYMTIFKALSIKGGIGRAPFALRKMTEVGFILNAYS-------YNGLIHLLL 212

Query: 492 K--CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
              C    +A+ V + MI  G+ P ++T+S LM     +GD + +  L   ++  G+ P+
Sbjct: 213 PGFCN---EALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPN 269

Query: 550 AYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
            Y + + I+A              K + +    PD  T  +L  +L   G+  +A
Sbjct: 270 IYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKA 324



 Score = 39.7 bits (91), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 43/212 (20%), Positives = 83/212 (39%), Gaps = 21/212 (9%)

Query: 398 YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA 457
           ++ G + D      ++   ++ G ++   +L++++ S G       I  +I+    + + 
Sbjct: 507 HKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRV 566

Query: 458 DAALKAFHDDRTLCGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
           DAA K F       G +   KL   ++ Y+ LL  L K  +   A+ +   M  SG  P+
Sbjct: 567 DAAWKMF-------GRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPN 619

Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK-----------Y 563
             TF+ L+   +      +  K+F  +      PD   +  +I    +           +
Sbjct: 620 TITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFH 679

Query: 564 LSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
                L PD  T   L   + + GR ++A  V
Sbjct: 680 QMKKFLSPDYVTLCTLIPGVVRHGRVEDAIKV 711


>gi|242092396|ref|XP_002436688.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
 gi|241914911|gb|EER88055.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
          Length = 551

 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 112/252 (44%), Gaps = 25/252 (9%)

Query: 358 PEVVSLLADAKFVWTTRLVCKVLRHFKSPET-AWHFFCWVAYQPGYTHDVYALEKMLTIL 416
           P + S L       +  LV +VL++  +    A  FF W   Q G+++       ++  L
Sbjct: 116 PRIASTLDALGVAMSPELVAEVLKNLSNAGMLALAFFRWAERQEGFSYTAEGFHNLIEAL 175

Query: 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK 476
            +    +LV  L+  +R  G+ L   T +LI+  Y  ++K   A++ F         +S 
Sbjct: 176 GKIKQFKLVWSLVETMRCRGL-LSKDTFKLIVRRYARARKVKEAVETFEK-------MSI 227

Query: 477 FKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSG-IVPDVQTFSGLMYHFALQGDEK 532
           F L   +  Y+ L+ TL+K K+   A  + +EM   G  VPD++T++ LM  +  + D  
Sbjct: 228 FGLKTELSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLL 287

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLK 580
           +V+ ++  +   G+ PD   + +LI A+CK             +  S  MP      +L 
Sbjct: 288 MVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLI 347

Query: 581 KSLWKEGRRKEA 592
             L  E R  EA
Sbjct: 348 NGLGSEERLDEA 359



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 81/169 (47%), Gaps = 11/169 (6%)

Query: 108 LATVLAKSQRNHELKTLIGDIS-SSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR 166
           L   L+KS++  + + +  ++    KF+     +  LM+ +    DL +V + + E    
Sbjct: 240 LIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKTMYQEMIDA 299

Query: 167 AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
                  +Y +++S + K+GK  EA++ F ++   G +P+   Y ++I  L +  +LD A
Sbjct: 300 GIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGLGSEERLDEA 359

Query: 227 LEVF-----SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
           L+ F     S  P M +   +     +V  +    +F+ A  +++EMR+
Sbjct: 360 LKYFEQYKKSGFP-MEVPTCNA----VVGAYCRASKFEHAFKMVDEMRE 403



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 90/205 (43%), Gaps = 6/205 (2%)

Query: 108 LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA 167
           L +   KS +  E   +  ++ +S  +     +  L+    +   L+  L  + +Y++  
Sbjct: 311 LISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGLGSEERLDEALKYFEQYKKSG 370

Query: 168 KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227
             +   + N V+  Y +  K   A +   ++ +    PNSRTY V++ +L+   K + A 
Sbjct: 371 FPMEVPTCNAVVGAYCRASKFEHAFKMVDEMRECKIGPNSRTYDVILHYLIKSQKFEEAY 430

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQ 287
            VF  + +   +     Y ++V  F    R D A ++  +M + G  P   M  AL  + 
Sbjct: 431 NVFQRMGMDGCEPQLNTYTMMVGMFCSNGRVDMALNVWKQMGERGVLPCMHMFSAL--IN 488

Query: 288 EMGF---IQGANEFLREMLPDKRIK 309
            + F   ++ A  + +EML DK I+
Sbjct: 489 GLCFENRLEEACVYFQEML-DKGIR 512



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 1/152 (0%)

Query: 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206
           Y  +   E      +E R+     ++ +Y++++    K+ K  EA   F+++  +G  P 
Sbjct: 385 YCRASKFEHAFKMVDEMRECKIGPNSRTYDVILHYLIKSQKFEEAYNVFQRMGMDGCEPQ 444

Query: 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
             TYT+M+    + G++D AL V+  +    +      +  L+ G     R +EA     
Sbjct: 445 LNTYTMMVGMFCSNGRVDMALNVWKQMGERGVLPCMHMFSALINGLCFENRLEEACVYFQ 504

Query: 267 EMRDDG-KFPGRAMRVALERMQEMGFIQGANE 297
           EM D G + PG+      E + E G I  A E
Sbjct: 505 EMLDKGIRPPGQLFSNLKEALVEGGRISLAQE 536



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 64/135 (47%), Gaps = 4/135 (2%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLST-ESYNIVMSVYAKTGKNFEAVET-FRQVID 200
           L+   S S  ++   + + E +++ K +   ++Y ++M  +    K+   V+T ++++ID
Sbjct: 240 LIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHE-KDLLMVKTMYQEMID 298

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
            G  P+   Y ++I      GK D A++VF  +       +   Y +L+ G    ER DE
Sbjct: 299 AGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGLGSEERLDE 358

Query: 261 AKSLLNEMRDDGKFP 275
           A     + +  G FP
Sbjct: 359 ALKYFEQYKKSG-FP 372


>gi|15237345|ref|NP_197146.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170213|sp|Q9FFE3.1|PP388_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16420, mitochondrial; Flags: Precursor
 gi|9759124|dbj|BAB09609.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332004907|gb|AED92290.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 535

 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 110/482 (22%), Positives = 188/482 (39%), Gaps = 59/482 (12%)

Query: 81  NADSALSI-MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS-KFLNVSV 138
           N D AL I + A KS+P F+HN  T H++   L++++    +++L+ D+ +S   +    
Sbjct: 61  NIDLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGE 120

Query: 139 N-FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           N F++L++ Y  +G  E  +  +          S  S N +++V  +  + F+ V    +
Sbjct: 121 NLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQN-QRFDLVHAMFK 179

Query: 198 VIDE--GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
              E  G  PN  T  ++++ L     ++SA +V   +P M +      Y  ++ G+V  
Sbjct: 180 NSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVAR 239

Query: 256 ERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
              + AK +L EM D G +P       L                     D   K  R+ E
Sbjct: 240 GDMESAKRVLEEMLDRGWYPDATTYTVLM--------------------DGYCKLGRFSE 279

Query: 316 DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALA---NTLDEWSPEVVSLLADAKFVWT 372
             +  D+ E ++      + YGV ++     K      N  DE        + +  F+  
Sbjct: 280 AATVMDDMEKNEIEPN-EVTYGVMIRALCKEKKSGEARNMFDE--------MLERSFMPD 330

Query: 373 TRLVCKVL----RHFKSPETA--WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVD 426
           + L CKV+       K  E    W         P    D   L  ++  L + G V    
Sbjct: 331 SSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMP----DNALLSTLIHWLCKEGRVTEAR 386

Query: 427 RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKA-FHDD--RTLCGPISKFKLMLLY 483
           +L  +     +    +   LI    G+ +K +        DD     C P +       Y
Sbjct: 387 KLFDEFEKGSIPSLLTYNTLIA---GMCEKGELTEAGRLWDDMYERKCKPNA-----FTY 438

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           + L+  L+K     + + VLEEM+  G  P+  TF  L       G E+   K+ SM   
Sbjct: 439 NVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMKIVSMAVM 498

Query: 544 NG 545
           NG
Sbjct: 499 NG 500



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 79/183 (43%), Gaps = 3/183 (1%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           V  AL      D A  +   +  N N   + + L  L   L K  R  E + L  +    
Sbjct: 337 VIDALCEDHKVDEACGLWRKMLKN-NCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEKG 395

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
              ++ + +  L+      G+L      W++  +R    +  +YN+++   +K G   E 
Sbjct: 396 SIPSL-LTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEG 454

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
           V    ++++ G  PN  T+ ++ E L  LGK + A+++ S + +M  K   + + + ++ 
Sbjct: 455 VRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMKIVS-MAVMNGKVDKESWELFLKK 513

Query: 252 FVG 254
           F G
Sbjct: 514 FAG 516



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 106/242 (43%), Gaps = 50/242 (20%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF---YGISK 455
            PG+TH+      +L  L+R    + V+ L+A LR+    +      L ID    YG++ 
Sbjct: 76  HPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGE-NLFIDLLRNYGLAG 134

Query: 456 KADAALKAF---------HDDRTLCGPIS------KFKL-----------------MLLY 483
           + +++++ F            R+L   ++      +F L                 +   
Sbjct: 135 RYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTC 194

Query: 484 SSLLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           + L++ L K K D + A  VL+E+   G+VP++ T++ ++  +  +GD +  +++   + 
Sbjct: 195 NLLVKALCK-KNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEML 253

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
             G  PDA  + VL+  YCK             +  + + P+  T  ++ ++L KE +  
Sbjct: 254 DRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSG 313

Query: 591 EA 592
           EA
Sbjct: 314 EA 315



 Score = 45.8 bits (107), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 83/227 (36%), Gaps = 13/227 (5%)

Query: 54  SSNSLSSLLNDRLLDP-FIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVL 112
           S  SL++LLN  + +  F + HA+    N+  +  I          + N  T + L   L
Sbjct: 154 SVRSLNTLLNVLIQNQRFDLVHAMFK--NSKESFGI----------TPNIFTCNLLVKAL 201

Query: 113 AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
            K         ++ +I S   +   V +  ++  Y   GD+E       E   R      
Sbjct: 202 CKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDA 261

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            +Y ++M  Y K G+  EA      +      PN  TY VMI  L    K   A  +F  
Sbjct: 262 TTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDE 321

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM 279
           +        S     +++      + DEA  L  +M  +   P  A+
Sbjct: 322 MLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNAL 368



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 73/166 (43%), Gaps = 9/166 (5%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+ W    G +      ++E+ ++  + S  +YN +++   + G+  EA   +  + +  
Sbjct: 372 LIHWLCKEGRVTEARKLFDEF-EKGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMYERK 430

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             PN+ TY V+IE L   G +   + V   +  +        +LIL EG   + + ++A 
Sbjct: 431 CKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAM 490

Query: 263 SLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRI 308
            +++    +GK    +  + L++         A E  + +LP K +
Sbjct: 491 KIVSMAVMNGKVDKESWELFLKKF--------AGELDKGVLPLKEL 528



 Score = 40.0 bits (92), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 90/223 (40%), Gaps = 23/223 (10%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G T +++    ++  L +   +E   +++ ++ S G+     T   I+  Y      ++A
Sbjct: 186 GITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESA 245

Query: 461 LKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
            +   +  DR        +     Y+ L+    K  R  +A  V+++M  + I P+  T+
Sbjct: 246 KRVLEEMLDRGW------YPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTY 299

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC-------------KYLS 565
             ++     +      + +F  + +    PD+ +   +I A C             K L 
Sbjct: 300 GVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLK 359

Query: 566 NSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
           N N MPD A    L   L KEGR  EA  + +  EK   +PSL
Sbjct: 360 N-NCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEK-GSIPSL 400


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 142/370 (38%), Gaps = 45/370 (12%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
            T SYN ++ V AK+G+      T+  ++  G +PN+ TY  ++  L    + + A  VF
Sbjct: 16  GTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVF 75

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA-LERMQEM 289
             +           Y IL+ G    ++ DEA  LLNEM D G  P      + L  + +M
Sbjct: 76  RGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKM 135

Query: 290 GFIQGANEFLREML-----PDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWL 344
           G ++ A +    M+     PD  + NV    DG     D  +        AY  +L   +
Sbjct: 136 GKLKEAVDLFSRMVYRGCPPDGVVYNVLI--DGFSKKGDMGE--------AY--RLFEEM 183

Query: 345 DPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSP-----ETAWHFFCWVA-- 397
             K    T+  ++  +       +F     L   +LR    P           FC +   
Sbjct: 184 LEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDM 243

Query: 398 ----------YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLI 447
                        G   DV +   ++  +   G      RL+ ++   G+     +  ++
Sbjct: 244 VEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNIL 303

Query: 448 IDFYGISKKADAALKAFHDDRTLCGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLE 504
           ID Y  S   D A+K F++       I K  L      YS+++  L +  +   A  V +
Sbjct: 304 IDGYSKSGALDHAIKLFYE-------IPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFK 356

Query: 505 EMIFSGIVPD 514
           +MI +G  PD
Sbjct: 357 DMIANGSAPD 366



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 94/476 (19%), Positives = 187/476 (39%), Gaps = 50/476 (10%)

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
           S  +++H   + + L  VLAKS R   +     D+  +  +  +  +  L++    +   
Sbjct: 9   SQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRF 68

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           E   S +     +    +  SY+I+++   +  K  EA E   ++ID G  PN  TY  +
Sbjct: 69  EEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSL 128

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           +  L  +GKL  A+++FS +           Y +L++GF       EA  L  EM + G 
Sbjct: 129 LSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGC 188

Query: 274 FPG----RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNN 329
            P      ++     R  E G +Q      ++ML    + N+  + +  D      D   
Sbjct: 189 IPTVFTYNSLLSGFSRKGEFGRVQ---SLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVE 245

Query: 330 SGVRIAYGVQLKPWLDPKALANTLDEWSPEVVS-------LLADAKFVWTTRLVCKVLRH 382
           +          + +L+ ++L        P+VVS       + +  K     RL+ +++R 
Sbjct: 246 A---------HRLFLEMRSLG-----CPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRS 291

Query: 383 FKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFS 442
              P                  D+ +   ++   ++ G ++   +L  ++   G+     
Sbjct: 292 GVGP------------------DIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAF 333

Query: 443 TIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINV 502
           +   IID    + K  AA   F  D    G      +++    L+  L + +R  ++  +
Sbjct: 334 SYSTIIDCLCRAGKVGAAFVVFK-DMIANGSAPDAAVVI---PLVIGLCRGERLTESCEL 389

Query: 503 LEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
            + M+    VP +  ++ LMY          V ++F  + + G  PD  + KV+++
Sbjct: 390 FQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILE 445



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 73/179 (40%), Gaps = 20/179 (11%)

Query: 392 FFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY 451
           FF W   Q  Y H   +   +L +LA+ G  + V      +   G  +P +        Y
Sbjct: 3   FFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGC-VPNTYT------Y 55

Query: 452 GISKKADAALKAFHDDRTL--------CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVL 503
           G   ++    + F + R++        C P      +  YS L+  L + ++  +A  +L
Sbjct: 56  GYLLRSLCQAQRFEEARSVFRGMAAQGCSPN-----VFSYSILIAGLCRGQKVDEAAELL 110

Query: 504 EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            EMI  G  P+V T+  L+      G  K    LFS +   G  PD  ++ VLI  + K
Sbjct: 111 NEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSK 169



 Score = 45.4 bits (106), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 36/187 (19%), Positives = 78/187 (41%), Gaps = 4/187 (2%)

Query: 89  MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS 148
           M +L   P+     + +  + +      + HE + L+ ++  S      V++  L+  YS
Sbjct: 253 MRSLGCPPDVVSYNTLMRGMCS----KGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYS 308

Query: 149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSR 208
            SG L+  +  + E  +        SY+ ++    + GK   A   F+ +I  G+ P++ 
Sbjct: 309 KSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAA 368

Query: 209 TYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
               ++  L    +L  + E+F A+          +Y +L+      +R D+   + +E+
Sbjct: 369 VVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHEL 428

Query: 269 RDDGKFP 275
            + G  P
Sbjct: 429 TERGFSP 435



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/81 (24%), Positives = 41/81 (50%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y SLL  L K  +  +A+++   M++ G  PD   ++ L+  F+ +GD     +LF 
Sbjct: 122 VVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFE 181

Query: 540 MVRQNGVEPDAYMFKVLIQAY 560
            + + G  P  + +  L+  +
Sbjct: 182 EMLEKGCIPTVFTYNSLLSGF 202


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 95/442 (21%), Positives = 174/442 (39%), Gaps = 56/442 (12%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SY  V++ + K G + +A  T+ +++D G +P+  TY  +I  L     +D A+EV + +
Sbjct: 198 SYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTM 257

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
               +      Y  ++ G+    +  EA   L +MR DG  P                  
Sbjct: 258 VKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEP------------------ 299

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVR---IAYGVQLKPWLDPKALA 350
             +     +L D   KN R  E     D         G++     YG  L+ +    AL 
Sbjct: 300 --DVVTYSLLMDYLCKNGRCMEARKIFDS----MTKRGLKPEITTYGTLLQGYATKGALV 353

Query: 351 NTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
                    V + +    +V++  L+C      K  +    F      Q G   +     
Sbjct: 354 EMHGLLDLMVRNGIHPDHYVFSI-LICAYANQGKVDQAMLVF--SKMRQQGLNPNAVTYG 410

Query: 411 KMLTILARHGHVE----LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD 466
            ++ IL + G VE      +++I +  S G  +  S I  +       +  +  L+    
Sbjct: 411 AVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML-- 468

Query: 467 DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
           DR +C         + ++S++ +  K  R  ++  + E M+  G+ P+V T++ L+  + 
Sbjct: 469 DRGICLNT------IFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYC 522

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAA 574
           L G      KL S +   G++P+   +  LI  YCK             + +S + PD  
Sbjct: 523 LAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDII 582

Query: 575 TKELLKKSLWKEGRRKEAAAVE 596
           T  ++ + L++   R+ AAA E
Sbjct: 583 TYNIILQGLFQT--RRTAAAKE 602



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 85/205 (41%), Gaps = 1/205 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+  A  +    D A+ +   ++     + N  T  A+  +L KS R  +       +  
Sbjct: 376 ILICAYANQGKVDQAMLVFSKMRQQ-GLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID 434

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                 ++ + +L+    T    E       E   R   L+T  +N ++  + K G+  E
Sbjct: 435 EGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIE 494

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           + + F  ++  G  PN  TY  +I      GK+D A+++ S +  + +K  +  Y  L+ 
Sbjct: 495 SEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLIN 554

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP 275
           G+  + R ++A  L  EM   G  P
Sbjct: 555 GYCKISRMEDALVLFKEMESSGVSP 579



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 106/520 (20%), Positives = 202/520 (38%), Gaps = 39/520 (7%)

Query: 64  DRLLDPFIVTH-----ALRSAPNADSALSIMEALKSN---PNFSHNQSTLHALATVLAKS 115
           DR + P +VT+     AL  A   D A+ ++  +  N   P+     S LH   +     
Sbjct: 224 DRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPK 283

Query: 116 QRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
           +    LK +  D      +  S+    LM +   +G        ++   +R       +Y
Sbjct: 284 EAIGFLKKMRSDGVEPDVVTYSL----LMDYLCKNGRCMEARKIFDSMTKRGLKPEITTY 339

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
             ++  YA  G   E       ++  G  P+   ++++I    N GK+D A+ VFS +  
Sbjct: 340 GTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQ 399

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQG 294
             +   +  Y  ++       R ++A     +M D+G  PG  +  +L   +      + 
Sbjct: 400 QGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWER 459

Query: 295 ANEFLREMLPDKRIKNVRYYEDGSDDDEDEND--DNNSGVRIAYGVQLKP-------WLD 345
           A E + EML      N  ++    D    E    ++     +   + +KP        ++
Sbjct: 460 AEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLIN 519

Query: 346 PKALANTLDEWS---PEVVSLLADAKFVWTTRLV---CKVLRHFKSPETAWHFFCWVAYQ 399
              LA  +DE       +VS+      V  + L+   CK+ R     E A   F  +   
Sbjct: 520 GYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRM----EDALVLFKEME-S 574

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
            G + D+     +L  L +         L  ++   G ++  ST  +I+     +K  D 
Sbjct: 575 SGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDD 634

Query: 460 ALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
           AL+ F +   LC  +   KL    ++ ++  L K  R+ +A ++      +G+VP+  T+
Sbjct: 635 ALQMFQN---LC--LMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTY 689

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
             +  +   QG  + + +LF  +  NG   D+ M   +++
Sbjct: 690 RLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVR 729



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 8/137 (5%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+S++  L K +    A+ VL  M+ +G++PD  T++ +++ +   G  K        +R
Sbjct: 234 YNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMR 293

Query: 543 QNGVEPDAYMFKVLIQAYCKYLSNSNLMP-----DAATKELLKKSLWKEGRRKEAAAVEE 597
            +GVEPD   + +L+   CK   N   M      D+ TK  LK  +   G   +  A + 
Sbjct: 294 SDGVEPDVVTYSLLMDYLCK---NGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKG 350

Query: 598 RCEKINDVPSLALRGHI 614
              +++ +  L +R  I
Sbjct: 351 ALVEMHGLLDLMVRNGI 367



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 98/493 (19%), Positives = 184/493 (37%), Gaps = 62/493 (12%)

Query: 125 IGDISSSKFLNVSVNFMNLMQWYS----TSGDLELVLSTWNEYRQRAKLLSTESYNIVMS 180
           +G++    F   ++ F  L++       TS  +++VL    E      + +  SYNI++ 
Sbjct: 110 LGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTEL---GCIPNVFSYNILLK 166

Query: 181 VYAKTGKNFEAVETFRQVIDE---GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
                 ++ EA+E    + D+   G+ P+  +YT +I      G  D A   +  +    
Sbjct: 167 GLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRG 226

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGAN 296
           I      Y  ++      +  D+A  +LN M  +G  P        L      G  + A 
Sbjct: 227 ILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAI 286

Query: 297 EFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDE- 355
            FL++M  D    +V  Y                 + + Y  +    ++ + + +++ + 
Sbjct: 287 GFLKKMRSDGVEPDVVTYS----------------LLMDYLCKNGRCMEARKIFDSMTKR 330

Query: 356 -WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT 414
              PE+ +     +   T           K      H    +  + G   D Y    ++ 
Sbjct: 331 GLKPEITTYGTLLQGYAT-----------KGALVEMHGLLDLMVRNGIHPDHYVFSILIC 379

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH---DDRTLC 471
             A  G V+    + +K+R  G+     T   +I     S + + A+  F    D+    
Sbjct: 380 AYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP 439

Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
           G I       +Y+SL+  L  C +   A  ++ EM+  GI  +   F+ ++     +G  
Sbjct: 440 GNI-------VYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 492

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYC---------KYLS---NSNLMPDAATKELL 579
              +KLF ++ + GV+P+   +  LI  YC         K LS   +  L P+  T   L
Sbjct: 493 IESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTL 552

Query: 580 KKSLWKEGRRKEA 592
                K  R ++A
Sbjct: 553 INGYCKISRMEDA 565



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 82/200 (41%), Gaps = 3/200 (1%)

Query: 77  RSAPNADSALSIMEALKSNPN-FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLN 135
           R++   D  L  M  L   PN FS+N   L  L     +SQ   EL  ++ D        
Sbjct: 137 RTSDAMDIVLRRMTELGCIPNVFSYN-ILLKGLCDE-NRSQEALELLHMMADDRGGGSPP 194

Query: 136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF 195
             V++  ++  +   GD +   ST++E   R  L    +YN +++   K     +A+E  
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVL 254

Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
             ++  G +P+  TY  ++    + G+   A+     +    ++     Y +L++     
Sbjct: 255 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKN 314

Query: 256 ERFDEAKSLLNEMRDDGKFP 275
            R  EA+ + + M   G  P
Sbjct: 315 GRCMEARKIFDSMTKRGLKP 334



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 84/195 (43%), Gaps = 30/195 (15%)

Query: 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK 476
            + G V   ++L   +   G++    T   +I+ Y ++ K D A+K       L G +S 
Sbjct: 487 CKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMK------LLSGMVSV 540

Query: 477 F--KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG----- 529
                 + YS+L+    K  R  DA+ + +EM  SG+ PD+ T     Y+  LQG     
Sbjct: 541 GLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIIT-----YNIILQGLFQTR 595

Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK---------YLSNSNLMP---DAATKE 577
                ++L+  + ++G + +   + +++   CK            N  LM    +A T  
Sbjct: 596 RTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFN 655

Query: 578 LLKKSLWKEGRRKEA 592
           ++  +L K GR  EA
Sbjct: 656 IMIDALLKVGRNDEA 670


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 112/515 (21%), Positives = 202/515 (39%), Gaps = 87/515 (16%)

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
           + L++  S   ++E V S   + + R  +++   +N +M    K G+   AVE    +  
Sbjct: 179 LKLLKDKSMVNEVEEVYSVMIKCQIRPTIVT---FNTMMDSRCKEGEVGRAVEVLDVMRM 235

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
            G  PN  +Y V++  L   G+ D A E+   + ++ +K ++  Y  L+ GF   E F+E
Sbjct: 236 FGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEE 295

Query: 261 AKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFL-----REMLPDKRIKNVRYY 314
           A  L  EM   G  P        +  +  +G +  A  +L      +++PD    N   Y
Sbjct: 296 ANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIY 355

Query: 315 EDGSDDDEDE--------------------NDDNNSGVR-----IAYGVQ---LKPWLDP 346
                 +  E                    N   + G R     IA G++   +K  L P
Sbjct: 356 GYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCP 415

Query: 347 KALANTL--------------DEWSPEVVSL-LADAKFVWTTRLVCKVLRHFKSPETAWH 391
             +  T+               E   E++S  L      +TTR+V ++     +P  A+ 
Sbjct: 416 DVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGEL--KLGNPSKAFG 473

Query: 392 FFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY 451
               +  + G+  D+     ++  L + G+ +  + L+ K+R +G+     T   II  +
Sbjct: 474 MKEEMKAE-GFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAH 532

Query: 452 GISKKADAALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS 509
            IS     A + F D   + +   +  + +++   ++   L   K+ FD      EM   
Sbjct: 533 LISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFD------EMQDK 586

Query: 510 GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNL 569
           G+ P+V T++ L+Y    +    +   LF+ +   GV P+ Y + +LI        NSNL
Sbjct: 587 GVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILIN------ENSNL 640

Query: 570 M------------------PDAATKELLKKSLWKE 586
                              PD+ T   L K L K+
Sbjct: 641 QYWQDALKLYKDMLDREIKPDSCTHSALMKHLSKD 675



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 97/209 (46%), Gaps = 16/209 (7%)

Query: 107 ALATVLAKSQRNHELKTLIGDISSSK-FLNVSVN---------FMNLMQWYSTSGDLELV 156
           AL TV+  +   + L  L G +S ++ +L+V VN         +  L+  YS  G+    
Sbjct: 308 ALPTVVTYNTIMYSLCRL-GRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEA 366

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ-VIDEGAIPNSRTYTVMIE 215
           L  ++E R +  + S  +YN ++    +TG N +  +  +  +I  G  P+  T+T+++ 
Sbjct: 367 LLLFSELRSKNLVPSVVTYNTLIDGGCRTG-NLDIAKGMKDDMIKHGLCPDVVTFTILVR 425

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               +G L  A E+F  +    +K     Y   + G + +    +A  +  EM+ +G FP
Sbjct: 426 GFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEG-FP 484

Query: 276 GRAM--RVALERMQEMGFIQGANEFLREM 302
              +   V +  + ++G    ANE +++M
Sbjct: 485 PDLITYNVLINGLCKLGNFDDANELVQKM 513



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 109/279 (39%), Gaps = 21/279 (7%)

Query: 56  NSLSSLLNDRLLDPFIVTHALRSAPNAD-SALSIMEALKSNPNFSHNQSTLHALATVLAK 114
           NS++   +  +  P  +   L S  +   +AL     ++  PNF  +++   A+  +LAK
Sbjct: 38  NSVNPHFHSAVTQPEFLLRVLNSVKHRPLTALRFFRWVEKQPNFHRSETAFVAILDILAK 97

Query: 115 S----------QRNHELKT-------LIGDISSSKFLNVSVNFMNLM-QWYSTSGDLELV 156
           +          ++  E+K        L+G I   +   VSV  ++L+ Q ++    LE  
Sbjct: 98  NGFMKPAYWVMEKAIEVKVDGGVLDVLVG-IGCGRNSEVSVKLLDLLIQVFAKKLILEKC 156

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           L  + +      L    + N V+ +        E  E +  +I     P   T+  M++ 
Sbjct: 157 LMVFYKMVNNGLLPDVRNCNRVLKLLKDKSMVNEVEEVYSVMIKCQIRPTIVTFNTMMDS 216

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFP 275
               G++  A+EV   + +         Y +LV G  G   FD AK L+ +M   G K  
Sbjct: 217 RCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVS 276

Query: 276 GRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
                  +    +    + AN+  REML    +  V  Y
Sbjct: 277 AHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTY 315



 Score = 45.8 bits (107), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 79/381 (20%), Positives = 151/381 (39%), Gaps = 35/381 (9%)

Query: 81  NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNF 140
           N   A  + E +K+   F  +  T + L   L K     +   L+  +     +   V +
Sbjct: 467 NPSKAFGMKEEMKAE-GFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTY 525

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
            +++  +  SG L      +++  ++    S  +Y +++  YA  G+   A + F ++ D
Sbjct: 526 TSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQD 585

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
           +G  PN  TY  +I  L     +D A  +F+ +    +      Y IL+     ++ + +
Sbjct: 586 KGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQD 645

Query: 261 AKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLR-EMLPDKRIK-NVRYYEDGS 318
           A  L  +M D    P      AL  M+ +         LR E LP   ++ N  +  +G 
Sbjct: 646 ALKLYKDMLDREIKPDSCTHSAL--MKHLSKDYKLLAVLRLENLPLAIVEINSTWIAEGF 703

Query: 319 DDDEDENDDNNSGVRIAYGVQLKPWLDP------------KALA-------NTLDEWSPE 359
              E+    NNS  R  +  +   +L+P            KAL         TL    P 
Sbjct: 704 VKLEESK--NNSHFRAIHVFEKGGFLEPFLGKLCAKSRVLKALICKAMDLRETLVHEIPN 761

Query: 360 VVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH 419
           V++ L   +            R+++   +   F   V  + G   ++ +L+ M  +   H
Sbjct: 762 VINKLTKLRNFLAFH------RYYEEKYSVLGFITGVLMEKG-IKNLTSLQNMCYVEVDH 814

Query: 420 GHVELVD--RLIAKLRSDGMR 438
           G V+L++  +++ +LR  G+R
Sbjct: 815 GGVDLIEEMKMLRQLRKLGLR 835



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 87/224 (38%), Gaps = 7/224 (3%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           A   L +M     +PN      + + L   L+        K LI  +S    L VS +  
Sbjct: 226 AVEVLDVMRMFGCDPN----DVSYNVLVNGLSGKGEFDRAKELIEQMSMLG-LKVSAHTY 280

Query: 142 N-LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
           N L++ +      E       E   R  L +  +YN +M    + G+  +A      +++
Sbjct: 281 NPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVN 340

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
           E  +P+  +Y  +I     LG    AL +FS L    +  +   Y  L++G       D 
Sbjct: 341 EDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDI 400

Query: 261 AKSLLNEMRDDGKFPGRAMRVALER-MQEMGFIQGANEFLREML 303
           AK + ++M   G  P       L R   +MG +  A E   EML
Sbjct: 401 AKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEML 444


>gi|218191262|gb|EEC73689.1| hypothetical protein OsI_08260 [Oryza sativa Indica Group]
          Length = 595

 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 100/462 (21%), Positives = 181/462 (39%), Gaps = 79/462 (17%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+Q +   G    V++ + +++     L    YNI M  Y K G   EAV+   ++   G
Sbjct: 76  LLQCFRKLGMTSEVIAYFLKFKDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKCGG 135

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+   YT +I      G++ +A +VF  +    I+     Y IL  GF       E  
Sbjct: 136 LTPDKIHYTCLINGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVF 195

Query: 263 SLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGAN----EFLREMLPDKRIKNVRYYEDG 317
            LL+ M D G  P      +A+     +GF +G N    E L  ++ +K I ++      
Sbjct: 196 DLLDRMADQGLEPNSLTYGIAI-----VGFCRGGNLSEAEVLFNVVEEKGIDHIEVMYS- 249

Query: 318 SDDDEDENDDNNSGVRIAYGVQLKPWLDPKAL--------ANTLDEWS-PEVVSLLADAK 368
                           +  G  L  W D   +         N +D +S  ++++ L    
Sbjct: 250 ---------------SMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVG 294

Query: 369 FVWTTRLVCKV-LRHFKSPETAWH-----FFC----------WV--AYQPGYTHDVYALE 410
            V     VCK+ L H   P+   +      +C          W     Q G + DV    
Sbjct: 295 NVQGASNVCKIMLEHNVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQRGLSIDVIVYT 354

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY----------GISKKADA- 459
            ++    + G ++   +L  ++ + G++       +++D +          GI+K+  + 
Sbjct: 355 ILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSF 414

Query: 460 ALKAFHDDRTLCGPISKFKLMLL------YSSLLRTLTKCKRDF--DAINVLEEMIFSGI 511
            L+A H+       +S  K M +      Y+ L+    KCK ++  +A  + +EM+  G+
Sbjct: 415 LLRANHNKL-----LSSMKDMQIEPDVPCYTVLID--GKCKAEYLVEARELFDEMLQKGL 467

Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
            PD   ++ L+  +  QG+    + L   +   G+EPD   F
Sbjct: 468 TPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIEPDELTF 509



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 28/194 (14%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           +++  L+  Y  +GD++     +++  QR   +    Y I+M+ Y K G+  EA + F Q
Sbjct: 316 ISYSKLISIYCQNGDMDKAHLWFHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQ 375

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALE---------------------VFSALPLM 236
           + + G  P+   YTV+++     G L   L+                     + S++  M
Sbjct: 376 MTNLGIKPDVIAYTVLLD-----GHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDM 430

Query: 237 RIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGA 295
           +I+     Y +L++G    E   EA+ L +EM   G  P      AL       G I  A
Sbjct: 431 QIEPDVPCYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKA 490

Query: 296 NEFLREMLPDKRIK 309
            + L+EM+ DK I+
Sbjct: 491 EDLLQEMI-DKGIE 503



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 83/209 (39%), Gaps = 2/209 (0%)

Query: 107 ALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR 166
           A+ T       N  +K L+ ++         +++  L+  Y   G+++     + E  + 
Sbjct: 111 AMDTYCKNGNMNEAVK-LLNEMKCGGLTPDKIHYTCLINGYCLKGEMQNAQQVFEEMLKA 169

Query: 167 AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
                  +YNI+ S + K+G   E  +   ++ D+G  PNS TY + I      G L  A
Sbjct: 170 NIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNLSEA 229

Query: 227 LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALER 285
             +F+ +    I      Y  +V G++     D A  L   +   G      +    +  
Sbjct: 230 EVLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLIND 289

Query: 286 MQEMGFIQGANEFLREMLPDKRIKNVRYY 314
           +  +G +QGA+   + ML    + +V  Y
Sbjct: 290 LCRVGNVQGASNVCKIMLEHNVVPDVISY 318



 Score = 46.2 bits (108), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 16/134 (11%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           ++Y+  + T  K     +A+ +L EM   G+ PD   ++ L+  + L+G+ +  Q++F  
Sbjct: 106 VIYNIAMDTYCKNGNMNEAVKLLNEMKCGGLTPDKIHYTCLINGYCLKGEMQNAQQVFEE 165

Query: 541 VRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGR 588
           + +  +EPD   + +L   +CK             +++  L P++ T  +      + G 
Sbjct: 166 MLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGN 225

Query: 589 RKEAA----AVEER 598
             EA      VEE+
Sbjct: 226 LSEAEVLFNVVEEK 239



 Score = 42.4 bits (98), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 40/194 (20%), Positives = 83/194 (42%), Gaps = 9/194 (4%)

Query: 369 FVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRL 428
           + +  +  CK+    K+ +   H+   V++  G   + + +  +L    + G    V   
Sbjct: 38  YSYLIQSYCKMGNLIKAVD---HYEAMVSH--GIETNCHIVSYLLQCFRKLGMTSEVIAY 92

Query: 429 IAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLR 488
             K +  G+ L      + +D Y  +   + A+K  ++ +  CG ++  K+   Y+ L+ 
Sbjct: 93  FLKFKDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMK--CGGLTPDKIH--YTCLIN 148

Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548
                    +A  V EEM+ + I PD+ T++ L   F   G    V  L   +   G+EP
Sbjct: 149 GYCLKGEMQNAQQVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEP 208

Query: 549 DAYMFKVLIQAYCK 562
           ++  + + I  +C+
Sbjct: 209 NSLTYGIAIVGFCR 222



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 14/129 (10%)

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           S L+  L +      A NV + M+   +VPDV ++S L+  +   GD       F  + Q
Sbjct: 284 SKLINDLCRVGNVQGASNVCKIMLEHNVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQ 343

Query: 544 NGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRK- 590
            G+  D  ++ +L+  YCK             ++N  + PD     +L     KE  ++ 
Sbjct: 344 RGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQG 403

Query: 591 -EAAAVEER 598
            E  A E R
Sbjct: 404 WEGIAKERR 412


>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g07290, mitochondrial; Flags: Precursor
 gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
 gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 880

 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 103/472 (21%), Positives = 189/472 (40%), Gaps = 59/472 (12%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SY+I++    + G+  EA     Q+ ++G  P++RTYTV+I+ L + G +D A  +F  +
Sbjct: 268 SYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEM 327

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFI 292
                K     Y +L++G     + +EA  +  +M  D  FP      AL     + G +
Sbjct: 328 IPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRV 387

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
             A E L  M       NVR +          N+      R+      KP+     L   
Sbjct: 388 VPAFELLTVMEKRACKPNVRTF----------NELMEGLCRVG-----KPYKAVHLLKRM 432

Query: 353 LDE-WSPEVVS--LLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYAL 409
           LD   SP++VS  +L D         +C+   H  +             +P    D    
Sbjct: 433 LDNGLSPDIVSYNVLIDG--------LCRE-GHMNTAYKLLSSMNCFDIEP----DCLTF 479

Query: 410 EKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID-FYGISKKADA--ALKAFHD 466
             ++    + G  ++    +  +   G+ L   T   +ID    + K  DA   L+    
Sbjct: 480 TAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVK 539

Query: 467 DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
            R L  P S        + +L  L+K  +  + + +L ++   G+VP V T++ L+    
Sbjct: 540 MRILTTPHS-------LNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLI 592

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAA 574
             GD     ++  +++ +G  P+ Y + ++I   C++            + +S + P+  
Sbjct: 593 RSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHV 652

Query: 575 TKELLKKSLWKEGRRKEAA----AVEERCEKIND-VPSLALRGHIWAVSSAD 621
           T  ++ K     G+   A     A+ ER  ++ND + S  L+G + +    D
Sbjct: 653 TYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGFVLSQKGID 704



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 5/181 (2%)

Query: 85  ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
           AL I+E L      +   S L+ +  +L+K  +  E   ++G I+    +   V +  L+
Sbjct: 530 ALFILETLVKMRILTTPHS-LNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLV 588

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204
                SGD+          +    L +   Y I+++   + G+  EA +    + D G  
Sbjct: 589 DGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVS 648

Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV----GVERFDE 260
           PN  TYTVM++  VN GKLD ALE   A+     +   + Y  L++GFV    G++  +E
Sbjct: 649 PNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGFVLSQKGIDNSEE 708

Query: 261 A 261
           +
Sbjct: 709 S 709



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 70/168 (41%), Gaps = 1/168 (0%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           SV++  L+      G LE      ++  ++    ST +Y +++      G   +A   F 
Sbjct: 266 SVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFD 325

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           ++I  G  PN  TYTV+I+ L   GK++ A  V   +   RI  +   Y  L+ G+    
Sbjct: 326 EMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDG 385

Query: 257 RFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREML 303
           R   A  LL  M      P  R     +E +  +G    A   L+ ML
Sbjct: 386 RVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRML 433



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 1/111 (0%)

Query: 166 RAKLLST-ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
           + ++L+T  S N+++ + +K  K  E +    ++   G +P+  TYT +++ L+  G + 
Sbjct: 539 KMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDIT 598

Query: 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            +  +   + L         Y I++ G     R +EA+ LL+ M+D G  P
Sbjct: 599 GSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSP 649



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/172 (19%), Positives = 71/172 (41%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T   L   L +  +  E   +   +   +     + +  L+  Y   G +       
Sbjct: 335 NVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELL 394

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
               +RA   +  ++N +M    + GK ++AV   ++++D G  P+  +Y V+I+ L   
Sbjct: 395 TVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCRE 454

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           G +++A ++ S++    I+     +  ++  F    + D A + L  M   G
Sbjct: 455 GHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKG 506


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 95/225 (42%), Gaps = 44/225 (19%)

Query: 375 LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILAR---------------- 418
           +V +VL+     + A  FF W   QPGY H  +    +L+   R                
Sbjct: 101 VVGRVLQQLDDLDKAVKFFDWCTGQPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRC 160

Query: 419 --------------HGHVELVD-----RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
                         +G  +  D     RL+ ++   G+    +    II     + + D+
Sbjct: 161 GLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDS 220

Query: 460 ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           AL  + D +  C P      ++ Y+ L+  L K  R  DA  +LE+MI +G  P+V T++
Sbjct: 221 ALVHYRDMQRNCAPS-----VITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYN 275

Query: 520 GLMYHFALQG--DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            L+  F   G  DE +V  LF+ + +N   PD + + +LI  YCK
Sbjct: 276 TLINGFCKLGNMDEAVV--LFNQMLENSCSPDVFTYNILIDGYCK 318



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 105/239 (43%), Gaps = 11/239 (4%)

Query: 46  IRLAVRSNSSNSLSSLLNDRLLD----PFIVTH-----ALRSAPNADSALSIMEALKSNP 96
           I  A R+N  +    LL +R+ +    P +VT+      L  A   D A  + E L+ N 
Sbjct: 418 ISGACRANRIDDARQLL-ERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLR-NG 475

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
            +  +  T   L   L KS+R  + + L+ ++  +      V +  L+  +  +  L+  
Sbjct: 476 GYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKS 535

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           L+ ++E   +  + +  +Y+IV+    K+ +  +     + +++ G  P++  YT +I+ 
Sbjct: 536 LAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDG 595

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           L      D A E++  +       T   Y +LV+    V R DEA  LL  M  DG  P
Sbjct: 596 LCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLP 654



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 90/243 (37%), Gaps = 34/243 (13%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           L P +V   L+   + D A+   +     P + H++ T + L +   + ++  E   L  
Sbjct: 97  LVPSVVGRVLQQLDDLDKAVKFFDWCTGQPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFK 156

Query: 127 D----------ISSSKFLNVSVNFMNLMQWYSTSGDLE---------------------- 154
           +          I+ S  +N      +  Q Y    ++E                      
Sbjct: 157 NHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNG 216

Query: 155 LVLSTWNEYR--QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
            V S    YR  QR    S  +Y I++    K+ +  +A      +I+ G  PN  TY  
Sbjct: 217 RVDSALVHYRDMQRNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNT 276

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +I     LG +D A+ +F+ +           Y IL++G+   ER  +   LL EM   G
Sbjct: 277 LINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYG 336

Query: 273 KFP 275
             P
Sbjct: 337 CEP 339



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 77/436 (17%), Positives = 165/436 (37%), Gaps = 50/436 (11%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN +++ + K G   EAV  F Q+++    P+  TY ++I+      +     ++   +
Sbjct: 273 TYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEM 332

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM-RDDGKFPGRAMRVALERMQEMGFI 292
                +     Y  L++  V   ++ +A +L   M R D K       + ++   ++G +
Sbjct: 333 VKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQL 392

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
             A E  + M     + ++  Y                 + I+   +     D + L   
Sbjct: 393 DLAYELFQLMTDRGCLPDIYTYN----------------IMISGACRANRIDDARQLLER 436

Query: 353 LDE--WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
           + E    P+VV+      +      +CK        + A+  +  V    GY  DV    
Sbjct: 437 MTEAGCPPDVVT------YNSIVSGLCKA----SQVDEAYEVY-EVLRNGGYFLDVVTCS 485

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD--DR 468
            ++  L +   ++  ++L+ ++  +G         ++I  +  + + D +L  F +  D+
Sbjct: 486 TLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDK 545

Query: 469 TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
             C P      ++ YS ++  L K  R  D   +L+ M+  G+ PD   ++ ++      
Sbjct: 546 G-CVPT-----VITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKS 599

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATK 576
                  +L+ +++Q G  P    + VL+   CK             + +   +PD  T 
Sbjct: 600 DSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTY 659

Query: 577 ELLKKSLWKEGRRKEA 592
             +    WK     +A
Sbjct: 660 NSVFDGFWKSAEHDKA 675



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 87/211 (41%), Gaps = 17/211 (8%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
           N + +  T   L   L KS R  +   ++ D+  +      V +  L+  +   G+++  
Sbjct: 231 NCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEA 290

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           +  +N+  + +      +YNI++  Y K  +  +  +  ++++  G  PN  TY  +++ 
Sbjct: 291 VVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDS 350

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP- 275
           LV  GK   A  +   +     K +   + ++++ F  V + D A  L   M D G  P 
Sbjct: 351 LVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPD 410

Query: 276 -----------GRAMRV-----ALERMQEMG 290
                       RA R+      LERM E G
Sbjct: 411 IYTYNIMISGACRANRIDDARQLLERMTEAG 441



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 82/206 (39%), Gaps = 28/206 (13%)

Query: 83  DSALSIMEALK--SNPNFSHNQSTLHALATVLAKSQR-----NHELKTLIGDISSSKFLN 135
           D A  + E +K    PNF     T + L   L KS +     N     L  D   S F  
Sbjct: 324 DGAKLLQEMVKYGCEPNFI----TYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHF-- 377

Query: 136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF 195
               F  ++  +   G L+L    +     R  L    +YNI++S   +  +  +A +  
Sbjct: 378 ---TFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLL 434

Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL------ILV 249
            ++ + G  P+  TY  ++  L    ++D A EV+  L      R    +L       L+
Sbjct: 435 ERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVL------RNGGYFLDVVTCSTLI 488

Query: 250 EGFVGVERFDEAKSLLNEMRDDGKFP 275
           +G     R D+A+ LL EM  +G  P
Sbjct: 489 DGLCKSRRLDDAEKLLREMERNGSAP 514



 Score = 45.8 bits (107), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 12/129 (9%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           + Y++L+ +L K  +  DA N+ + M+     P   TF+ ++  F   G   +  +LF +
Sbjct: 342 ITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQL 401

Query: 541 VRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGR 588
           +   G  PD Y + ++I   C+             ++ +   PD  T   +   L K  +
Sbjct: 402 MTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQ 461

Query: 589 RKEAAAVEE 597
             EA  V E
Sbjct: 462 VDEAYEVYE 470



 Score = 40.4 bits (93), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 468 RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
           +T C P      ++ Y+ L+  L K  R  +AI++LE M   G +PD  T++ +   F  
Sbjct: 614 QTGCAPT-----VVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWK 668

Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
             +     +LF  ++  G  P  +M+ +L+
Sbjct: 669 SAEHDKAFRLFQAMKSRGCSPTPFMYSLLL 698


>gi|32488707|emb|CAE03450.1| OSJNBa0088H09.8 [Oryza sativa Japonica Group]
          Length = 905

 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 83/400 (20%), Positives = 166/400 (41%), Gaps = 38/400 (9%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           S   + +++  YAK G    A  TF  +   G  PN+  +T ++        +  AL   
Sbjct: 296 SRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCV 355

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVE------RFDEAKSLLNEMRDDGKFPGRAMRVALE 284
             +    ++ T   Y IL+ GF  +         + A+ L+ EM +DG      + V   
Sbjct: 356 EEMKSEGLELTIVTYSILISGFAKINDSHQSGNMERAEELVREMEEDGI--DAPIDVYHS 413

Query: 285 RMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWL 344
            M     IQ  N+ L   +  +R+K   +                    I+YG  L  ++
Sbjct: 414 MMHGYTIIQNENKCL---VVFERLKECGFKPS----------------IISYGCLLNLYV 454

Query: 345 DPKALANTLD-EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYT 403
               +A  L      E   +  + K   T  ++     H      A+  F  +  + G  
Sbjct: 455 KIGKVAKALSISKEMESCGIKHNNK---TYSMLINGFIHLHDFANAFAIFEEM-LRSGLQ 510

Query: 404 HDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKA 463
            D      ++    + G+++    ++ K++ + M+      R II+ Y ++    +AL  
Sbjct: 511 PDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDT 570

Query: 464 FH-DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
                R+ C P      ++ Y++L+  L +  +   A++VL++M  +GI P+  T++ +M
Sbjct: 571 LDLMRRSGCVPT-----VMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIM 625

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
             +A  GD     + F+ ++++G++ D Y+++ L++A CK
Sbjct: 626 RGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCK 665



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 101/514 (19%), Positives = 207/514 (40%), Gaps = 56/514 (10%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHE------LKTLI 125
           + HA   A +   ALS +E +KS         T   L +  AK   +H+       + L+
Sbjct: 338 LVHAYAVARDMRGALSCVEEMKSE-GLELTIVTYSILISGFAKINDSHQSGNMERAEELV 396

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
            ++           + ++M  Y+   +    L  +   ++     S  SY  ++++Y K 
Sbjct: 397 REMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKI 456

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
           GK  +A+   +++   G   N++TY+++I   ++L    +A  +F  +    ++     Y
Sbjct: 457 GKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIY 516

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLP 304
            +L+E F  +   D A  +L +M+ +   P  RA R  +E     G ++ A + L  M  
Sbjct: 517 NLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRR 576

Query: 305 DKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLL 364
              +  V  Y                   + +G+  K  +  +   + LD+ S   ++ +
Sbjct: 577 SGCVPTVMTYNA-----------------LIHGLVRKHKV--QRAVSVLDKMS---IAGI 614

Query: 365 ADAKFVWTTRLVCKVLRHFKSP---ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGH 421
              +  +T      ++R + +      A+ +F  +  + G   DVY  E +L    + G 
Sbjct: 615 TPNEHTYTI-----IMRGYAASGDIGKAFEYFTKIK-ESGLKLDVYIYETLLRACCKSGR 668

Query: 422 VELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA-----ALKAFHDDRTLCGPISK 476
           ++    L         ++P +T    I   G +++ D       +K   +D     P + 
Sbjct: 669 MQ--SALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGV---PPN- 722

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
              +  Y+S +    K      A  V+EEM+  G+ P+V+T++ L+  +A         K
Sbjct: 723 ---IHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALK 779

Query: 537 LFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM 570
            F  ++  G++PD   +  L+ +    LS + +M
Sbjct: 780 CFEEMKLAGLKPDEASYHCLVTS---LLSRATVM 810



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 493 CKRDFDAINVLEEMIFSGIV--PDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA 550
           CK+  D +++    +F  ++  P  + F  ++ ++A +GD+   +  F  +R  G+EP+A
Sbjct: 273 CKQSLDVLDLTYPFLFKKLLHEPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNA 332

Query: 551 YMFKVLIQAY 560
           ++F  L+ AY
Sbjct: 333 FVFTSLVHAY 342


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 111/523 (21%), Positives = 196/523 (37%), Gaps = 68/523 (13%)

Query: 119 HELKTL------IGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
           HE+K L        D+  S+ L   V+F  LM         +LV+S + +  ++      
Sbjct: 55  HEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDI 114

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            S+ I++  +    K   A+ TF ++   G  P+  T+  ++  L    ++  AL +F  
Sbjct: 115 YSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQ 174

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGF 291
           +     +     +  L+ G     R  EA +LL+ M +DG  P +      ++ M ++G 
Sbjct: 175 MFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGD 234

Query: 292 IQGANEFLREMLPDKRI-KNVRYYE---DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPK 347
              A + LR+M     I  NV  Y    D    D   +D  N          L   +  K
Sbjct: 235 TVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQN----------LFTEMQEK 284

Query: 348 ALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY 407
            +   L  ++  +V   +  ++    +L+ ++L    SP                  DV 
Sbjct: 285 GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISP------------------DVV 326

Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDD 467
               ++    + G     + L  ++   G+     T   +ID +    + DAA   F+  
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM 386

Query: 468 RTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
            T  C P      ++ +++L+      KR  D + +L EM  +G+V D  T++ L++ F 
Sbjct: 387 ATKGCSPN-----LITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFY 441

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNS------- 567
           L GD      L   +  +G+ PD      L+   C            K +  S       
Sbjct: 442 LVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDAS 501

Query: 568 ----NLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
                + PD  T  +L   L  EG+  EA  + E       VP
Sbjct: 502 HPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVP 544



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 89/447 (19%), Positives = 173/447 (38%), Gaps = 33/447 (7%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL 143
           SAL ++  ++   +   N     A+   L K  R+ + + L  ++           + ++
Sbjct: 237 SALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSM 296

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
           +  + +SG          E  +R       +YN +++ + K GK FEA E + +++  G 
Sbjct: 297 IVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGI 356

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL---ILVEGFVGVERFDE 260
           IPN+ TY+ MI+      +LD+A  +F    LM  K  S   +    L++G+ G +R D+
Sbjct: 357 IPNTITYSSMIDGFCKQNRLDAAEHMFY---LMATKGCSPNLITFNTLIDGYCGAKRIDD 413

Query: 261 AKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSD 319
              LL+EM + G           +     +G +  A + L+EM+      ++   +   D
Sbjct: 414 GMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLD 473

Query: 320 DDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLD----EWSPEVVSLLADAKFVWTTRL 375
              D     ++        + K  LD     N ++     ++  +  L+ + KF+    L
Sbjct: 474 GLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEEL 533

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
                      E   H         G   D      M+  L +   ++   ++   + S 
Sbjct: 534 Y----------EEMPH--------RGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSK 575

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR 495
                  T   +I+ Y  + + D  L+ F +     G        + Y +L+    K   
Sbjct: 576 SFSPNVVTFTTLINGYCKAGRVDDGLELFCE----MGRRGIVANAITYITLICGFRKVGN 631

Query: 496 DFDAINVLEEMIFSGIVPDVQTFSGLM 522
              A+++ +EMI SG+ PD  T   ++
Sbjct: 632 INGALDIFQEMISSGVYPDTITIRNML 658



 Score = 39.7 bits (91), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 35/80 (43%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+  L    +  +A  + EEM   GIVPD  T+S ++     Q       ++F  + 
Sbjct: 514 YNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMG 573

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
                P+   F  LI  YCK
Sbjct: 574 SKSFSPNVVTFTTLINGYCK 593


>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
          Length = 642

 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 104/513 (20%), Positives = 218/513 (42%), Gaps = 55/513 (10%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN-LMQWYSTSGDLEL 155
           NF H+ ST   L   L +++   E+   I ++  + +++VS   ++ L++    +  +  
Sbjct: 121 NFQHDCSTYMTLIRCLEEARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSK 180

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG-AIPNSRTYTVMI 214
            LS + + + R    ++ +YN V+ +  + G++ +  E + ++ +EG   P++ TY+ +I
Sbjct: 181 ALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALI 240

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
                LG+ DSA+ +F  +    ++ T K Y  L+  +  V + ++A  L  EM+  G  
Sbjct: 241 SSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCS 300

Query: 275 PGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYED-----GSDDDEDE--ND 326
           P       L + + + G +  A  F ++ML D    +V +  +     G     +E  N 
Sbjct: 301 PTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNV 360

Query: 327 DNNSGV------RIAYGVQLKPWLDPKALANTLDEWSPEV-VSLLADAKFVWTTRL--VC 377
            +  G+       ++Y   +K   + KA  + +  W  ++    ++ ++F ++  +   C
Sbjct: 361 FSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYC 420

Query: 378 KVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM 437
           K  R  K+             + G+     A   ++  L +    E  D L  +L+ +  
Sbjct: 421 KTNRVEKA-----LLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAADELFKELKENFG 475

Query: 438 RLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGP-----------ISKFKLMLLYSS 485
            +      ++I  +G   K   A+  F++ +    GP           + K  ++   +S
Sbjct: 476 NVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANS 535

Query: 486 LLRTLTK--CKRDFD-----------------AINVLEEMIFSGIVPDVQTFSGLMYHFA 526
           LLR + +  C+ D +                 AI + E +  SGI PD  T++ L+  FA
Sbjct: 536 LLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFA 595

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
             G  +   ++   ++  G E DA  +  ++ A
Sbjct: 596 HAGMFEEAARMMREMKDKGFEYDAITYSSILDA 628



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 74/394 (18%), Positives = 160/394 (40%), Gaps = 37/394 (9%)

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
           T +Y+ ++S Y K G+N  A+  F ++ D    P  + YT ++     +GK++ AL++F 
Sbjct: 233 TITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFE 292

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA-MRVALERMQEMG 290
            +       T   Y  L++G     R DEA     +M  DG  P    +   +  + ++G
Sbjct: 293 EMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVG 352

Query: 291 FIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALA 350
            ++       EM   +    V                      ++Y   +K   + KA  
Sbjct: 353 RVEELTNVFSEMGMWRCTPTV----------------------VSYNTVIKALFESKAHV 390

Query: 351 NTLDEWSPEV-VSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY 407
           + +  W  ++    ++ ++F ++  +   CK  R  K+             + G+     
Sbjct: 391 SEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKA-----LLLLEEMDEKGFPPCPA 445

Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDD 467
           A   ++  L +    E  D L  +L+ +   +      ++I  +G   K   A+  F++ 
Sbjct: 446 AYCSLINALGKAKRYEAADELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEM 505

Query: 468 RTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
           +    GP      +  Y++L+  + K     +A ++L +M  +G   D+ + + ++  FA
Sbjct: 506 KNQGSGPD-----VYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFA 560

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
             G  +   ++F  ++ +G++PD   +  L+  +
Sbjct: 561 RTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCF 594



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 81/191 (42%), Gaps = 3/191 (1%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           + AL ++E +     F    +   +L   L K++R      L  ++  + F NVS     
Sbjct: 426 EKALLLLEEM-DEKGFPPCPAAYCSLINALGKAKRYEAADELFKELKEN-FGNVSSRVYA 483

Query: 143 LM-QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
           +M + +   G L   +  +NE + +       +YN +MS   K G   EA    R++ + 
Sbjct: 484 VMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEEN 543

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G   +  ++ +++      G    A+E+F  +    IK     Y  L+  F     F+EA
Sbjct: 544 GCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEA 603

Query: 262 KSLLNEMRDDG 272
             ++ EM+D G
Sbjct: 604 ARMMREMKDKG 614



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 93/253 (36%), Gaps = 20/253 (7%)

Query: 355 EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT 414
           +W P+    L   K     RLV  +L           FF W   +  + HD      ++ 
Sbjct: 75  KWGPDAEKALEVLKLKVDHRLVRSILEIDVEINVKIQFFKWAGKRRNFQHDCSTYMTLIR 134

Query: 415 ILARHG-HVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CG 472
            L     + E+   +   +R+  + +  + +  ++   G +K    AL  F+  +   C 
Sbjct: 135 CLEEARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQAKGRKCK 194

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSG-IVPDVQTFSGLMYHFALQGDE 531
           P S       Y+S++  L +  +      V  EM   G   PD  T+S L+  +   G  
Sbjct: 195 PTSS-----TYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRN 249

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELL 579
               +LF  ++ N ++P   ++  L+  Y K             +  +   P   T   L
Sbjct: 250 DSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTEL 309

Query: 580 KKSLWKEGRRKEA 592
            K L K GR  EA
Sbjct: 310 IKGLGKAGRVDEA 322



 Score = 42.7 bits (99), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 66/159 (41%), Gaps = 16/159 (10%)

Query: 447 IIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
           +I+  G +K+ +AA + F + +   G +S      +Y+ +++   KC +  +A+++  EM
Sbjct: 450 LINALGKAKRYEAADELFKELKENFGNVSS----RVYAVMIKHFGKCGKLSEAVDLFNEM 505

Query: 507 IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK---- 562
              G  PDV  ++ LM      G       L   + +NG   D     +++  + +    
Sbjct: 506 KNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVP 565

Query: 563 --------YLSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
                    + +S + PD  T   L       G  +EAA
Sbjct: 566 RRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAA 604


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 103/519 (19%), Positives = 210/519 (40%), Gaps = 67/519 (12%)

Query: 64  DRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQST---------LH----ALAT 110
           +R L P  V   +R   +  +AL +   +K+   F H   T         LH    A+  
Sbjct: 2   NRALQPKHVAAVIRYQNDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMED 61

Query: 111 VLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLL 170
           VLA+ ++N + K L G             ++ +M+ Y   G ++  ++ +          
Sbjct: 62  VLAEMRKNVDSKMLEG------------VYIGIMRDYGRKGKVQEAVNVFERMDFYDCEP 109

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           S +SYN +M++  + G   +A + + ++ D G  P+  T+T+ ++     G+  +AL + 
Sbjct: 110 SVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLL 169

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEM 289
           + +P    +  +  Y  ++ GF       EA  L +EM   G  P        +  + + 
Sbjct: 170 NNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKK 229

Query: 290 GFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKA- 348
           G +Q + +   +++      N+  +              N  ++   G+  K  +D  A 
Sbjct: 230 GNVQESEKLFSKVMKRGVCPNLFTF--------------NIFIQ---GLCRKGAIDEAAR 272

Query: 349 -LANTLDE-WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDV 406
            L + + E  +P+V+S        + T L+C   +H K  E   +    V    G   + 
Sbjct: 273 LLESIVSEGLTPDVIS--------YNT-LICGFCKHSKLVEAECYLHKMV--NSGVEPNE 321

Query: 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA--ALKAF 464
           +    ++    + G ++  D+++      G      T   +I+  G+    D   A+  F
Sbjct: 322 FTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLIN--GLCNDGDMNRAMAVF 379

Query: 465 HDDRTLCGPISKFK-LMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
           ++          FK  ++LY++L++ L+K      A+ ++++M+  G  PD+ T++ ++ 
Sbjct: 380 YEAME-----KGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVN 434

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
                G       + +     G  PD + F  LI  YCK
Sbjct: 435 GLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCK 473



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 90/394 (22%), Positives = 163/394 (41%), Gaps = 40/394 (10%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++N ++ V  K G   E+ + F +V+  G  PN  T+ + I+ L   G +D A  +  ++
Sbjct: 218 TFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESI 277

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
               +      Y  L+ GF    +  EA+  L++M + G  P        +    + G +
Sbjct: 278 VSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMM 337

Query: 293 QGANEFLREMLPDKRIKNVRYYE---DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKAL 349
           Q A++ LR+ +    I +   Y    +G  +D     D N  + + Y    K +     L
Sbjct: 338 QNADKILRDAMFKGFIPDEFTYSSLINGLCND----GDMNRAMAVFYEAMEKGFKHSIIL 393

Query: 350 ANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYAL 409
            NTL      V  L      +   +L+  ++ H  SP+       W      Y   V  L
Sbjct: 394 YNTL------VKGLSKQGLVLQALQLMKDMMEHGCSPDI------WT-----YNLVVNGL 436

Query: 410 EKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRT 469
            KM  +   +G   +++  IAK    G      T   +ID Y   +  D A++    D  
Sbjct: 437 CKMGCLSDANG---ILNDAIAK----GCIPDIFTFNTLIDGYCKQRNMDKAIEIL--DTM 487

Query: 470 LCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
           L   I+    ++ Y++LL  L K ++  + ++  + M+  G  P++ T++ L+  F    
Sbjct: 488 LSHGITPD--VITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFC--K 543

Query: 530 DEKIVQ--KLFSMVRQNGVEPDAYMFKVLIQAYC 561
           D K+ +  +LF  ++  G+ PD      LI   C
Sbjct: 544 DRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLC 577



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 82/402 (20%), Positives = 156/402 (38%), Gaps = 44/402 (10%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN +++ + K G    A +  R  + +G IP+  TY+ +I  L N G ++ A+ VF   
Sbjct: 323 TYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEA 382

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
                K +   Y  LV+G        +A  L+ +M + G  P      + +  + +MG +
Sbjct: 383 MEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCL 442

Query: 293 QGANEFLREMLPDKRIKNV--------RYYEDGSDDDEDENDDN--NSGVR---IAYGVQ 339
             AN  L + +    I ++         Y +  + D   E  D   + G+    I Y   
Sbjct: 443 SDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTL 502

Query: 340 LKPWLDPKALANTLDEW--------SPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWH 391
           L      + L N +D +        +P +++     +     R V + +  FK  +T   
Sbjct: 503 LNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTR-- 560

Query: 392 FFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFST--IRLIID 449
                    G T D+  L  ++  L  +G ++    L   +  +  +  +ST    ++I+
Sbjct: 561 ---------GLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKE-YKFSYSTAIFNIMIN 610

Query: 450 FYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD-AINVLEEMI 507
            +        A K FH    + C P   +   ++  S  +T      + D A   L E I
Sbjct: 611 AFCXKLNVSMAEKLFHKMGGSDCAP-DNYTYRVMIDSYCKT-----GNIDLAHTFLLENI 664

Query: 508 FSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
             G+VP   T   ++    +         + +++ QNG+ P+
Sbjct: 665 SKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPE 706



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 98/248 (39%), Gaps = 21/248 (8%)

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS- 434
           V  V+R+   P  A   F  V  + G+ H +   + M+  L  HG  E ++ ++A++R  
Sbjct: 10  VAAVIRYQNDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKN 69

Query: 435 -DGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTK 492
            D   L    I ++ D YG   K   A+  F   D   C P  +      Y++++  L +
Sbjct: 70  VDSKMLEGVYIGIMRD-YGRKGKVQEAVNVFERMDFYDCEPSVQS-----YNAIMNILVE 123

Query: 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYM 552
                 A  V   M   GI PDV T +  M  F + G      +L + +   G E +A  
Sbjct: 124 YGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVS 183

Query: 553 FKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCE 600
           +  +I  + K             +    + PD  T   L   L K+G  +E+  +  +  
Sbjct: 184 YCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVM 243

Query: 601 KINDVPSL 608
           K    P+L
Sbjct: 244 KRGVCPNL 251



 Score = 46.6 bits (109), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 69/428 (16%), Positives = 160/428 (37%), Gaps = 43/428 (10%)

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
           N     N+ T + +     K+        ++ D     F+     + +L+      GD+ 
Sbjct: 314 NSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMN 373

Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
             ++ + E  ++    S   YN ++   +K G   +A++  + +++ G  P+  TY +++
Sbjct: 374 RAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVV 433

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
             L  +G L  A  + +             +  L++G+      D+A  +L+ M   G  
Sbjct: 434 NGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGIT 493

Query: 275 PGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRI 334
           P                +   N  L  +   +++ NV       D  +   +   +   I
Sbjct: 494 PD---------------VITYNTLLNGLCKARKLDNV------VDTFKAMLEKGCTPNII 532

Query: 335 AYGVQLKPWLDPKALANTLDEW--------SPEVVSLLADAKFVWTTRLVCKVLRHFKSP 386
            Y + ++ +   + ++  ++ +        +P++V+L           L+C +  +    
Sbjct: 533 TYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCT---------LICGLCSN-GEL 582

Query: 387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
           + A+  F  +  +  +++       M+       +V + ++L  K+          T R+
Sbjct: 583 DKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRV 642

Query: 447 IIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
           +ID Y  +   D A   F  +    G +  F        +L  L    R  +A+ ++  M
Sbjct: 643 MIDSYCKTGNIDLA-HTFLLENISKGLVPSFTTC---GKVLNCLCVTHRLSEAVVIINLM 698

Query: 507 IFSGIVPD 514
           + +GIVP+
Sbjct: 699 VQNGIVPE 706



 Score = 45.8 bits (107), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 93/237 (39%), Gaps = 61/237 (25%)

Query: 377 CKVLRHFKSPET---AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
           C V+  F        A+H F  +  Q G   D+    K++ +L + G+V+  ++L +K+ 
Sbjct: 185 CAVISGFYKENCQIEAYHLFDEMLKQ-GICPDILTFNKLIHVLCKKGNVQESEKLFSKVM 243

Query: 434 SDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKC 493
             G+     T  + I   G+ +K               G I                   
Sbjct: 244 KRGVCPNLFTFNIFIQ--GLCRK---------------GAID------------------ 268

Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK---LFSMVRQNGVEPDA 550
               +A  +LE ++  G+ PDV +++ L+  F      K+V+    L  MV  +GVEP+ 
Sbjct: 269 ----EAARLLESIVSEGLTPDVISYNTLICGFCKH--SKLVEAECYLHKMV-NSGVEPNE 321

Query: 551 YMFKVLIQAYCK--YLSNSN----------LMPDAATKELLKKSLWKEGRRKEAAAV 595
           + +  +I  +CK   + N++           +PD  T   L   L  +G    A AV
Sbjct: 322 FTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAV 378


>gi|302771417|ref|XP_002969127.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
 gi|300163632|gb|EFJ30243.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
          Length = 646

 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 96/519 (18%), Positives = 211/519 (40%), Gaps = 52/519 (10%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           ++T  ++++ +   AL + + +K       N+ T +AL  V  K   + E   L+ ++ +
Sbjct: 151 MITACIQNS-HCQEALRLFQEMKE-AGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEA 208

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           +      V +  L+  Y+ +G  +   +       +       +Y  ++S + +  +  +
Sbjct: 209 AGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEK 268

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI--- 247
           A+ETF ++      PN  TY ++I+    + KLD  ++VF     M+ K  +   +    
Sbjct: 269 ALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFK---FMQEKNCTPDLVTWNS 325

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDK 306
           L++ F       E  ++  EM+  G  PG     + +E     G++  + +  + +L   
Sbjct: 326 LLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTG 385

Query: 307 RIKNVRYY--------------------EDGSDDDEDENDDNNSGVRIAYG-----VQLK 341
               V  +                    ++ ++     +D  ++G+  +Y       QL+
Sbjct: 386 LQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLR 445

Query: 342 PWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPG 401
            ++D       L++ + + +S +    FV      CK     ++            Y  G
Sbjct: 446 KYIDE------LEKSAKQPLSGILCKTFVLA---YCKCCMDNEAQLALNQL-----YDNG 491

Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL 461
           ++ D+     M+++ A+ G +E   +L+ ++R   ++    T   ++  YG       A 
Sbjct: 492 HSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYHKAE 551

Query: 462 KAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL 521
           +   + R       K   ++ Y++LL + TK  R  DA  V  +M+ + + PD  TF+ L
Sbjct: 552 EVMSEMRR----AGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTL 607

Query: 522 MYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
           +  ++  G  K    +   + ++G +P    FK L+  Y
Sbjct: 608 VGSYSSLGLYKEALSVIEYMTEHGCQPTQITFKALLDGY 646



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 113/564 (20%), Positives = 213/564 (37%), Gaps = 83/564 (14%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL 143
           +AL + E+LK + ++S +     +L ++L++++R  E  TL   +        +V +  +
Sbjct: 56  AALELFESLKQDESYSLDVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVM 115

Query: 144 MQWYSTSGD-LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           +  Y   GD  + + S + E +         +YN +++   +     EA+  F+++ + G
Sbjct: 116 LDLYGKRGDSWDRIQSLFQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAG 175

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA- 261
             PN  TY  +++     G    A E+   +    I      Y  L+  +      DEA 
Sbjct: 176 CCPNRVTYNALLDVYGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAA 235

Query: 262 ---KSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGS 318
              KSLL++     +F    +  A  R +     + A E   EM       N+  Y    
Sbjct: 236 ALKKSLLSKGLCPDEFTYCTLISAFNRAER---YEKALETFTEMRKTNCTPNIVTYNILI 292

Query: 319 D--DDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLV 376
           D     ++ DD          +++  ++  K     L  W+    SLL           V
Sbjct: 293 DIYGRMEKLDDM---------MKVFKFMQEKNCTPDLVTWN----SLLKSFGNCGMLTEV 339

Query: 377 CKVLRHFKSPETAWHFFCWVAYQPG------------------YTHDVY----------- 407
             V R  K             Y PG                  Y+ D+Y           
Sbjct: 340 SNVFREMKR----------AGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPT 389

Query: 408 --ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465
                 ++  LAR G  +  +++  ++   G++L  +    +I  Y  S +    L+ + 
Sbjct: 390 VPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQF-FQLRKYI 448

Query: 466 DD--RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
           D+  ++   P+S     +L  + +    KC  D +A   L ++  +G  PD++ F+ ++ 
Sbjct: 449 DELEKSAKQPLSG----ILCKTFVLAYCKCCMDNEAQLALNQLYDNGHSPDIKVFNAMIS 504

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK---YLSNSNLM---------P 571
             A +G  +   KL   +R+  ++PD   +  L+  Y +   Y     +M         P
Sbjct: 505 MCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYHKAEEVMSEMRRAGKAP 564

Query: 572 DAATKELLKKSLWKEGRRKEAAAV 595
           +  T   L  S  K GR  +AA V
Sbjct: 565 NLITYNTLLYSYTKHGRMDDAARV 588



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 92/216 (42%), Gaps = 25/216 (11%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G + ++    +++   AR G  +    L   L S G+     T   +I  +  +++ + A
Sbjct: 210 GISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKA 269

Query: 461 LKAFHDDR-TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           L+ F + R T C P      ++ Y+ L+    + ++  D + V + M      PD+ T++
Sbjct: 270 LETFTEMRKTNCTPN-----IVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWN 324

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY--CKYLSNS---------- 567
            L+  F   G    V  +F  +++ G  P    F +LI+ Y  C Y+  S          
Sbjct: 325 SLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRT 384

Query: 568 NLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIN 603
            L P   T   L  SL +EGR ++       CEK++
Sbjct: 385 GLQPTVPTFAALMASLAREGRWQQ-------CEKVS 413


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 115/535 (21%), Positives = 206/535 (38%), Gaps = 84/535 (15%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM-QWYSTSGDLELVLSTWNE 162
           T   L   L K+ + +E ++L  D    K +  SV    +M   Y   G L  +    N 
Sbjct: 437 TYGLLLDYLCKNGKCNEARSLF-DSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNL 495

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
                   +   +N V+  YAK     E +  F ++  +G  PN  TY  +I+ L  LG+
Sbjct: 496 MVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGR 555

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA 282
           +D A+  F+ +    +   +  +  LV G   V+++++ + L  EM + G  P       
Sbjct: 556 VDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRP------- 608

Query: 283 LERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKP 342
                ++ F    N  L  +  + R+   R   D                 +  G  LKP
Sbjct: 609 -----DIVFF---NTVLCNLCKEGRVMEARRLIDS---------------MVCMG--LKP 643

Query: 343 -------WLDPKALANTLDE------------WSPEVVSLLADAKFVWTTRL--VCKVLR 381
                   +D    A+ +DE              P +VS        + T L   CK  R
Sbjct: 644 DVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVS--------YNTLLHGYCKAGR 695

Query: 382 HFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPF 441
                + A+  F     + G T  V     +L  L R G       L   +         
Sbjct: 696 ----IDNAYCLF-REMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSI 750

Query: 442 STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAIN 501
            T  +I+D +  +   D A K F   ++LC    +  + + ++ ++  L K  R  DA++
Sbjct: 751 CTYSIILDGFCKNNCFDEAFKIF---QSLCSMDLQLDI-ITFNIMIDGLFKGGRKEDAMD 806

Query: 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ--- 558
           +   +  +G+VP V T+  +  +   +G  + +  LFS++ ++G  P+++M   LI+   
Sbjct: 807 LFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLL 866

Query: 559 ---------AYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND 604
                    AY   L   N   +A+T  +L     +E  ++ A ++ E+C   N+
Sbjct: 867 DRGEIPRAGAYLSKLDEKNFSLEASTTSMLISLFSREEYQQHAKSLPEKCRFFNE 921



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 108/560 (19%), Positives = 219/560 (39%), Gaps = 61/560 (10%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           IV +   +    D A S+   +  +P+      T + +   L K+Q     + +   +  
Sbjct: 198 IVINGFFNEGQVDKAYSLFLEMGVSPDVV----TYNTIIDGLCKAQEVDRAEDVFQQMVE 253

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                 +V +  ++     + ++++    + +   +    S  +YN ++    K      
Sbjct: 254 KGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDR 313

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A   F+Q+ID G  P+  TY  +I+ L     +D A  VF  +    +K  +  Y I+++
Sbjct: 314 AEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIID 373

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL--------------ERMQEMGFIQ-GA 295
           G    +  D A+ +  +M D G  P       L              +R++EM       
Sbjct: 374 GLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEP 433

Query: 296 NEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDE 355
           + F   +L D   KN +  E  S  D          V I YG+ L  +    AL+   D 
Sbjct: 434 DVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTI-YGIMLHGYGKKGALSEMHDL 492

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
            +  V + ++    ++ T ++C   +     E   H F  +  Q G + +V     ++  
Sbjct: 493 LNLMVANGISPNHRIFNT-VICAYAKRAMIDEV-MHIFIKMK-QQGLSPNVVTYGTLIDA 549

Query: 416 LARHGHVELVDRLIAKLRSDGM---RLPFSTIRLIIDFYGIS------KKADAALKAFHD 466
           L + G V+       ++ ++G+    + F+++      YG+       K  +  L+  + 
Sbjct: 550 LCKLGRVDDAVLQFNQMINEGVTPNNVVFNSL-----VYGLCTVDKWEKVEELFLEMLNQ 604

Query: 467 DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM--YH 524
                        ++ ++++L  L K  R  +A  +++ M+  G+ PDV +++ L+  + 
Sbjct: 605 GIR--------PDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHC 656

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPD 572
           FA + DE +  KL   +   G++P+   +  L+  YCK             +    + P 
Sbjct: 657 FASRMDEAV--KLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPG 714

Query: 573 AATKELLKKSLWKEGRRKEA 592
             T   +   L++ GR  EA
Sbjct: 715 VETYNTILNGLFRSGRFSEA 734



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 109/514 (21%), Positives = 206/514 (40%), Gaps = 75/514 (14%)

Query: 150 SGDLEL--VLSTWNEYRQRAKLLSTESYNIVMSVYAK---TGKNFEAVETFRQVIDEGA- 203
           SG+L L   L  ++E    A+  S  + N ++SV ++   +  +  AV  F +++ + + 
Sbjct: 19  SGNLGLHDALKLFDELLLHARPASVRALNQLLSVVSRAKCSSSSKLAVSRFNRMLRDCSN 78

Query: 204 --IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE- 260
              P+  TY+++I     +G+L+     F               LIL  G+    R D+ 
Sbjct: 79  KVAPDCCTYSIVIGCFCRIGRLELGFAAFG--------------LILKTGW----RVDDI 120

Query: 261 -AKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGA---NEFLREMLPDKRIKNVRYYED 316
               LL  + D  K  G AM V L +M E+G   G    N  L+ +   +R +  R    
Sbjct: 121 VVNQLLKGLCDT-KRVGEAMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLH 179

Query: 317 GSDDDEDENDDNNSGVRIAYGVQLKPWLDP----KALANTLDEW-SPEVVSLLADAKFVW 371
              D +D +   +    ++Y + +  + +     KA +  L+   SP+VV+      +  
Sbjct: 180 MMVDGQDSSCSPDV---VSYNIVINGFFNEGQVDKAYSLFLEMGVSPDVVT------YNT 230

Query: 372 TTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAK 431
               +CK     ++ +           + G   +      ++  L +   V++ + +  K
Sbjct: 231 IIDGLCKAQEVDRAEDVFQQMV-----EKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQK 285

Query: 432 LRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD--DRTLCGPISKFKLMLLYSSLLRT 489
           +   G++    T   IID    ++  D A   F    DR +  P       + Y++++  
Sbjct: 286 MVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGV-KPDH-----VTYNTIIDG 339

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
           L K +    A  V ++MI  G+ PD  T++ ++            + +F  +   GV+P+
Sbjct: 340 LCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPN 399

Query: 550 AYMFKVLIQAY------------CKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
              +  LI  Y             K +S  +L PD  T  LL   L K G+  EA ++ +
Sbjct: 400 NGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFD 459

Query: 598 RCEKINDVPSLALRG---HIWAVSSADLTRVHSI 628
              +    PS+ + G   H +    A L+ +H +
Sbjct: 460 SMIRKGIKPSVTIYGIMLHGYGKKGA-LSEMHDL 492



 Score = 42.7 bits (99), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 79/214 (36%), Gaps = 3/214 (1%)

Query: 63  NDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELK 122
           N R+ +  I  +A R+    D  + I   +K     S N  T   L   L K  R  +  
Sbjct: 504 NHRIFNTVICAYAKRAM--IDEVMHIFIKMKQQ-GLSPNVVTYGTLIDALCKLGRVDDAV 560

Query: 123 TLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVY 182
                + +      +V F +L+    T    E V   + E   +        +N V+   
Sbjct: 561 LQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNL 620

Query: 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
            K G+  EA      ++  G  P+  +Y  +I+      ++D A+++   +    +K   
Sbjct: 621 CKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNI 680

Query: 243 KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
             Y  L+ G+    R D A  L  EM   G  PG
Sbjct: 681 VSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPG 714


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 99/484 (20%), Positives = 194/484 (40%), Gaps = 41/484 (8%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D+ +S+ + ++     S N  TL  L    +  QR     +++  I         V F  
Sbjct: 115 DTVISLTKQMEL-AGLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTT 173

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+ W    G     +  +++   R       +Y  +++   K G+   A    +++ + G
Sbjct: 174 LINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAG 233

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             PN  TY+ +I+      +++ AL++FS + +  I      Y  L++G     ++ EA 
Sbjct: 234 CQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEAS 293

Query: 263 SLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDD 321
           +LLNEMR     P      V ++ + + G +  A   L+ M       +V  Y       
Sbjct: 294 ALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSS----- 348

Query: 322 EDENDDNNSGVRIAYGVQLKP-WLDPKALANTL--DEWSPEVVSLLADAKFVWTTRLVCK 378
                       + YG  L+   ++ + L + +      P+V S      +       CK
Sbjct: 349 ------------LMYGYSLRSEVVEARKLFDAMITKGCKPDVFS------YNILINGYCK 390

Query: 379 VLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR 438
           V    K  + A   F  + +Q G T +  +   ++  L + G +     L   + ++G  
Sbjct: 391 V----KRIDEAKQLFNEMIHQ-GLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNL 445

Query: 439 LPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD 498
               T  +++D  G  K+     KAF   R +    SK  L ++Y+ L+  + K     D
Sbjct: 446 PNLFTYSILLD--GFCKQGYFG-KAFRLFRAMQSTYSKPNL-VMYNILIDAMCKSGNLRD 501

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQG--DEKIVQKLFSMVRQNGVEPDAYMFKVL 556
           A  +  E+   G+ P+ Q ++ ++     +G  DE +  + F  + ++G  PD   + V+
Sbjct: 502 ARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEAL--EAFRNMEEDGCPPDEISYNVI 559

Query: 557 IQAY 560
           I+ +
Sbjct: 560 IRGF 563



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 98/210 (46%), Gaps = 22/210 (10%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G + ++Y L  ++   +    V+L   ++AK+   G++    T   +I++     K   A
Sbjct: 128 GLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQA 187

Query: 461 LKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           ++ F D     C P      +  Y++++  L K      A  +L++M  +G  P+V T+S
Sbjct: 188 MELFDDMVARGCRPD-----VYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYS 242

Query: 520 GLMYHFALQGDEKIVQKL--FSMVRQNGVEPDAYMFKVLIQAYCKY------------LS 565
            ++   + + D ++ + L  FS ++  G+ PD + +  LIQ  C +            + 
Sbjct: 243 TIID--SHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMR 300

Query: 566 NSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
           + N+MPD  T  +L  ++ KEG+  EA  V
Sbjct: 301 SLNIMPDIVTFNVLVDTICKEGKVSEAQGV 330



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 99/251 (39%), Gaps = 43/251 (17%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   DVY    ++  L + G       L+ K+   G +    T   IID +   ++ + A
Sbjct: 198 GCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEA 257

Query: 461 LKAF----------------------------HDDRTLCGPISKFKLM---LLYSSLLRT 489
           L  F                             +   L   +    +M   + ++ L+ T
Sbjct: 258 LDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDT 317

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
           + K  +  +A  VL+ M   G+ PDV T+S LMY ++L+ +    +KLF  +   G +PD
Sbjct: 318 ICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPD 377

Query: 550 AYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
            + + +LI  YCK             + +  L P+  +   L   L + G  +EA  + +
Sbjct: 378 VFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFK 437

Query: 598 RCEKINDVPSL 608
                 ++P+L
Sbjct: 438 NMHTNGNLPNL 448



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 75/414 (18%), Positives = 165/414 (39%), Gaps = 33/414 (7%)

Query: 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF-RQVIDEGAIPNSRTY 210
           +++  L+++N    R  L     +  ++S   K G+ ++ V +  +Q+   G  PN  T 
Sbjct: 77  NIDDALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTL 136

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
           +++I    +L ++D A  V + +  + ++ T   +  L+     V +F +A  L ++M  
Sbjct: 137 SILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVA 196

Query: 271 DGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNN 329
            G  P        +  + ++G    A   L++M       NV  Y    D    +     
Sbjct: 197 RGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDR---- 252

Query: 330 SGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETA 389
              R+   + +  ++  K ++  +  ++  +  L   +++   + L    L   +S    
Sbjct: 253 ---RVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASAL----LNEMRS---- 301

Query: 390 WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID 449
                 +   P    D+     ++  + + G V     ++  +   G+     T   ++ 
Sbjct: 302 ------LNIMP----DIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMY 351

Query: 450 FYGISKKADAALKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF 508
            Y +  +   A K F    T  C P      +  Y+ L+    K KR  +A  +  EMI 
Sbjct: 352 GYSLRSEVVEARKLFDAMITKGCKPD-----VFSYNILINGYCKVKRIDEAKQLFNEMIH 406

Query: 509 SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            G+ P+  +++ L++     G  +  + LF  +  NG  P+ + + +L+  +CK
Sbjct: 407 QGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCK 460



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 49/98 (50%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YNI++    K+G   +A + F ++  +G  PN++ YT +I  L   G LD ALE F  + 
Sbjct: 486 YNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNME 545

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
                     Y +++ GF+  +    A  L+ EMRD G
Sbjct: 546 EDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKG 583



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 99/243 (40%), Gaps = 14/243 (5%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHA-------LRS-APNADSALSIMEALK 93
           L+D+I    + + +  +   + +  ++P +VT++       LRS    A      M    
Sbjct: 314 LVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKG 373

Query: 94  SNPN-FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD 152
             P+ FS+N      L     K +R  E K L  ++        +V++  L+      G 
Sbjct: 374 CKPDVFSYN-----ILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGS 428

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
           L    + +        L +  +Y+I++  + K G   +A   FR +    + PN   Y +
Sbjct: 429 LREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNI 488

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +I+ +   G L  A ++FS L +  ++  ++ Y  ++ G       DEA      M +DG
Sbjct: 489 LIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDG 548

Query: 273 KFP 275
             P
Sbjct: 549 CPP 551



 Score = 45.8 bits (107), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 41/219 (18%), Positives = 92/219 (42%), Gaps = 23/219 (10%)

Query: 406 VYALEKMLTILARHG-HVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           +    K+L+ + + G + + V  L  ++   G+     T+ ++I+ +   ++ D A    
Sbjct: 97  IIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLSILINCFSHLQRVDLAFSVL 156

Query: 465 HDDRTLCGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL 521
                    I K  L   ++ +++L+  L K  +   A+ + ++M+  G  PDV T++ +
Sbjct: 157 -------AKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTI 209

Query: 522 MYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNL 569
           +      G+      L   + + G +P+   +  +I ++ K            Y+    +
Sbjct: 210 INGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGI 269

Query: 570 MPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
            PD  T   L + L    + KEA+A+      +N +P +
Sbjct: 270 SPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDI 308


>gi|116310235|emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
          Length = 581

 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 88/178 (49%), Gaps = 3/178 (1%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F +++  Y  +G LE  ++ +N+      + +T +YN++++ Y K G    AVE ++Q
Sbjct: 321 VTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQ 380

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +      P+  T++ +I+     G+LD AL ++S +   RI+     + I++       R
Sbjct: 381 MTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNR 440

Query: 258 FDEAKSLLNE--MRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRY 313
            DEA  LLNE  +R D           ++ + + G +  AN  +R+ + +K  +  +Y
Sbjct: 441 SDEAIRLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEAN-LIRKGMEEKGCRPDKY 497



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 91/208 (43%), Gaps = 25/208 (12%)

Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK-----K 456
           Y+ DV++   ++  + R G V+    L+ ++   G      T  +I+D  G+ +     +
Sbjct: 245 YSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVD--GLCRTNEVSR 302

Query: 457 ADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
               L+    D  +C P      ++ ++S++    K  +  DA+ V  +M+ SGI+P+  
Sbjct: 303 GHEVLRRLQRD-GVCMPN-----VVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTV 356

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------L 564
           T++ L+  +   GD     +++  + +    PD   F  LI  YC+             +
Sbjct: 357 TYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDM 416

Query: 565 SNSNLMPDAATKELLKKSLWKEGRRKEA 592
           +   + P+  T  ++  SL K+ R  EA
Sbjct: 417 AQHRIQPNVYTFSIIIHSLCKQNRSDEA 444



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 97/220 (44%), Gaps = 11/220 (5%)

Query: 61  LLNDRLLDP--FIVTHALRSAPNADSALSIMEALKSNP-NFSHNQSTLHALATVLAKSQR 117
           LL  R +DP       ALR AP A SAL++  AL  +P + + +  +   +  VL +S R
Sbjct: 98  LLGFRRIDPSPLAAVAALRLAPCASSALAVFTALHCSPLSITPSAHSCQQIIVVLCRSGR 157

Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL----ELVLSTWNEYRQRAKLLSTE 173
             +   L   +++    +    F++ +    T  +L      +LS  +E+  R +     
Sbjct: 158 QADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVE---AY 214

Query: 174 SYNIVMSVYAKTGKNFEAVETF-RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           +YN +MS     G+  + V  F R + D    P+  ++ V+I+ +  +G++  ALE+   
Sbjct: 215 AYNKLMSSLIGRGRVHDVVALFERWIQDRLYSPDVWSFNVVIKGVCRVGQVQKALELVER 274

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +        +  + I+V+G            +L  ++ DG
Sbjct: 275 MNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDG 314



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 1/139 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F +L+  Y   G L+  L  W++  Q     +  +++I++    K  ++ EA+    +
Sbjct: 391 VTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLLNE 450

Query: 198 V-IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           + +     P +  Y  +I+ L   GK+D A  +   +     +     Y IL+ G+    
Sbjct: 451 LNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKS 510

Query: 257 RFDEAKSLLNEMRDDGKFP 275
           R  EA    +EM + G  P
Sbjct: 511 RISEAIMFFHEMVEAGCSP 529


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 91/491 (18%), Positives = 198/491 (40%), Gaps = 45/491 (9%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
             +HN  TL+ +     +  +     +++G +    +   +  F  L++     G +   
Sbjct: 108 GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEA 167

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           +   +   +        +YN +++   ++G    A++  R++ +     +  TY+ +I+ 
Sbjct: 168 VVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDS 227

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
           L   G +D+A+ +F  +    IK +   Y  LV G     ++++   LL +M      P 
Sbjct: 228 LCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPN 287

Query: 277 R-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIA 335
                V L+   + G +Q ANE  +EM+      N+  Y    D                
Sbjct: 288 VITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMD---------------G 332

Query: 336 YGVQLKPWLDPKALANTLD-----EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW 390
           Y +Q +         N LD     + SP++V+  +  K     + V   ++ F++     
Sbjct: 333 YCMQNR----LSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRN----- 383

Query: 391 HFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF 450
                   + G   +      ++    + G ++L + L  ++ S G+     T  +++D 
Sbjct: 384 ------ISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDG 437

Query: 451 YGISKKADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFS 509
              + K + AL+ F D +      SK  L +++Y++++  + K  +  DA N+   +   
Sbjct: 438 LCDNGKLEKALEIFEDLQK-----SKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCK 492

Query: 510 GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNL 569
           G+ P+V T++ ++     +G       L   + ++G  P+   +  LI+A   +L + +L
Sbjct: 493 GVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRA---HLRDGDL 549

Query: 570 MPDAATKELLK 580
              A   E +K
Sbjct: 550 TASAKLIEEMK 560



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 85/193 (44%), Gaps = 1/193 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D+A+S+ + +++      +  T ++L   L K+ + ++   L+ D+ S + +   + F  
Sbjct: 235 DAAISLFKEMETK-GIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNV 293

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  +   G L+     + E   R    +  +YN +M  Y    +  EA      ++   
Sbjct: 294 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 353

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  T+T +I+    + ++D  ++VF  +    +   +  Y ILV+GF    +   A+
Sbjct: 354 CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAE 413

Query: 263 SLLNEMRDDGKFP 275
            L  EM   G  P
Sbjct: 414 ELFQEMVSHGVLP 426



 Score = 40.8 bits (94), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 13/117 (11%)

Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
           K+D DAI + +EMI S  +P +  FS      A      +V      +  NG+  + Y  
Sbjct: 58  KKD-DAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTL 116

Query: 554 KVLIQAYCKYLSNS------------NLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
            ++I  +C+                    PD  T   L K L+ EG+  EA  + +R
Sbjct: 117 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDR 173


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 105/482 (21%), Positives = 197/482 (40%), Gaps = 59/482 (12%)

Query: 162 EYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG 221
           E  +R  + +  +YNI++ +  + GK   A+E    +   G  PN  T  +MI+ L    
Sbjct: 149 EEMKRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQ 208

Query: 222 KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRV 281
           KL+ A  +F  +        +  +  L++G     R D+A SL  +M D G  PG  +  
Sbjct: 209 KLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYT 268

Query: 282 ALER-MQEMGFIQGANEFLREML-----PDKRIKNVRYYEDGSDDDEDENDDNNSGVRIA 335
           +L R   + G  +  ++  +EM+     PD  + N  Y +      E E           
Sbjct: 269 SLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINT-YMDCVFKAGETEKG--------- 318

Query: 336 YGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCW 395
                      +AL   ++         + DA+    + L+  +++   + ET +  F +
Sbjct: 319 -----------RALFREINAH-----GFIPDAR--SYSILIHGLVKAGLANET-YELF-Y 358

Query: 396 VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455
              + G   D +A   ++    + G V    +L+ +++  G      T   +ID      
Sbjct: 359 AMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKID 418

Query: 456 KADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
           + D A   F + ++     +  KL +++YSSL+    K  R  +A  ++EE++  G+ P+
Sbjct: 419 RLDEAYMLFEEAKS-----NGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPN 473

Query: 515 VQTFSGLMYHFALQGDEKIVQKL--FSMVRQNGVEPDAYMFKVLIQAYCKY--------- 563
           V T++ L+   AL   E+I + L  F  ++     P+   + +LI   C+          
Sbjct: 474 VYTWNCLLD--ALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVF 531

Query: 564 ---LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP-SLALRGHIWAVSS 619
              +    L P+  T   +   L K G   EA+ +  R +    +P S +    I  +SS
Sbjct: 532 WQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSS 591

Query: 620 AD 621
           A+
Sbjct: 592 AN 593



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 75/162 (46%)

Query: 114 KSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE 173
           K+    + + L  +I++  F+  + ++  L+     +G        +   +++  +L T 
Sbjct: 311 KAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTH 370

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN V+  + K+GK  +A +   ++  +G  P   TY  +I+ L  + +LD A  +F   
Sbjct: 371 AYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEA 430

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               IK     Y  L++GF  V R DEA  ++ E+   G  P
Sbjct: 431 KSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP 472



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 85/205 (41%), Gaps = 1/205 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+   L  A   + A SI E +  +   + N  T  +L   L K  R  +  +L   +  
Sbjct: 199 IMIDRLCKAQKLEEACSIFEGM-DDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLD 257

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
              +  ++ + +L++ +   G  E     + E             N  M    K G+  +
Sbjct: 258 CGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEK 317

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
               FR++   G IP++R+Y+++I  LV  G  +   E+F A+        +  Y  +++
Sbjct: 318 GRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVID 377

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP 275
           GF    + ++A  LL EM+  G  P
Sbjct: 378 GFCKSGKVNKAYQLLEEMKVKGHPP 402



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 100/509 (19%), Positives = 195/509 (38%), Gaps = 25/509 (4%)

Query: 78  SAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVS 137
           SA   D A  ++E  K+  +   +    + + T L K +R  E   +  ++      NV 
Sbjct: 102 SAGKFDEAYGLLERQKAKGSIP-SVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVP 160

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
             +  L+      G L   L   ++  +     +  + NI++    K  K  EA   F  
Sbjct: 161 T-YNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEG 219

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + D+   PN+ T++ +I+ L   G++D A  ++  +        +  Y  L+  F    R
Sbjct: 220 MDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGR 279

Query: 258 FDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
            ++   +  EM   G  P   +    ++ + + G  +      RE+     I + R Y  
Sbjct: 280 KEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSI 339

Query: 317 GSDDDEDENDDNNSGVRIAYGVQLKPW-LDPKALANTLDEWSP-----EVVSLLADAKF- 369
                      N +   + Y ++ +   LD  A    +D +       +   LL + K  
Sbjct: 340 LIHGLVKAGLANET-YELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVK 398

Query: 370 -----VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVEL 424
                V T   V   L      + A+  F   A   G   +V     ++    + G ++ 
Sbjct: 399 GHPPTVVTYGSVIDGLAKIDRLDEAYMLF-EEAKSNGIKLNVVVYSSLIDGFGKVGRIDE 457

Query: 425 VDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS 484
              ++ +L   G+     T   ++D    +++ + AL  F   + L  P ++    + YS
Sbjct: 458 AYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQ----ITYS 513

Query: 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544
            L+  L + ++   A    +EM   G+ P+  T++ ++   A  G+      LFS  + N
Sbjct: 514 ILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKAN 573

Query: 545 GVEPDAYMFKVLIQAYCKYLSNSNLMPDA 573
           G  PD+  +  +I+     LS++N   DA
Sbjct: 574 GGIPDSASYNAMIEG----LSSANKAMDA 598



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 69/179 (38%), Gaps = 1/179 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A  IME L      + N  T + L   L K++  +E       +   K     + +  
Sbjct: 456 DEAYLIMEELMQK-GLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSI 514

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+               W E ++     +T +Y  ++S  AK G   EA   F +    G
Sbjct: 515 LINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANG 574

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
            IP+S +Y  MIE L +  K   A  +F    L      +K  ++L++     E  ++A
Sbjct: 575 GIPDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDALHKAECLEQA 633


>gi|8778269|gb|AAF79278.1|AC068602_1 F14D16.2 [Arabidopsis thaliana]
          Length = 977

 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/270 (21%), Positives = 105/270 (38%), Gaps = 18/270 (6%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
           W P     L +           +VL+       A  FF W+  QPG+ HD +    M+  
Sbjct: 431 WGPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGN 490

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPI 474
           L R      +++L+ ++  DG +    T   +I  YG +   + A+  F+      C P 
Sbjct: 491 LGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPD 550

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
                 + Y +L+    K      A+++ + M   G+ PD  T+S ++      G     
Sbjct: 551 R-----VTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAA 605

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKS 582
            KLF  +   G  P+   + +++  + K             + N+   PD  T  ++ + 
Sbjct: 606 HKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEV 665

Query: 583 LWKEGRRKEAAAVEERCEKINDVPSLALRG 612
           L   G  +EA AV    ++ N +P   + G
Sbjct: 666 LGHCGYLEEAEAVFTEMQQKNWIPDEPVYG 695



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/248 (18%), Positives = 108/248 (43%), Gaps = 6/248 (2%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           +D +     L+   +  +AL     LK  P F H+  T   +   L ++++   +  L+ 
Sbjct: 446 IDAYQANQVLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLD 505

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
           ++        +V +  L+  Y  +  L   ++ +N+ ++        +Y  ++ ++AK G
Sbjct: 506 EMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAG 565

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
               A++ ++++   G  P++ TY+V+I  L   G L +A ++F  +           Y 
Sbjct: 566 FLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYN 625

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM--- 302
           I+++       +  A  L  +M++ G  P +    + +E +   G+++ A     EM   
Sbjct: 626 IMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQK 685

Query: 303 --LPDKRI 308
             +PD+ +
Sbjct: 686 NWIPDEPV 693


>gi|225466731|ref|XP_002268415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g05600-like [Vitis vinifera]
          Length = 503

 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 123/538 (22%), Positives = 216/538 (40%), Gaps = 61/538 (11%)

Query: 65  RLLDPFIVTHALRSAPNADSALSIMEALKSN-PNFSHNQSTLHALATVLAKSQRNHELKT 123
           R L P  ++  +R+  N  +AL I    KS  PN+ HN      +  VL  S R  E++ 
Sbjct: 7   RFLIPTQLSQMIRTQKNPLTALKIFNEAKSKFPNYRHNGPVYATMINVLGSSGRIAEMRE 66

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           +I  +           F ++M+ Y+ +G ++  +S +    Q   +  T S+N ++ +  
Sbjct: 67  VIDQMKQDSCECKDSVFSSVMKTYARAGMVDEAVSLFKTLPQFNCVNWTGSFNTLLRILV 126

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSR--TYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
           K  K   A   F +    G    SR  +  ++++ L  + + D AL VF  +        
Sbjct: 127 KESKLETACRLFLEH-SCGWEVKSRIGSLNLLMDALCQINRSDLALHVFQEMRYQCCSPD 185

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEM--RDDGKFPGR---AMRVALERMQEMGFIQGAN 296
            + Y IL+ G     R +EA  LL  M  R   K  G    A R  L+ + + G ++ A 
Sbjct: 186 KESYRILMRGLCEDGRLNEATHLLYSMFWRISQKGGGEDIAAYRTLLDALCDNGHVEEAL 245

Query: 297 EFLREMLPD-----KRIK---NVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKA 348
           E L ++L       KR +   ++ Y  +G D +  +   N + +R   GV          
Sbjct: 246 EILGKVLKKGLKAPKRCRGHLDLSYCCNGEDIERTKGLINEALIR--GGVP--------- 294

Query: 349 LANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYA 408
              ++  +S   + L ++ K         +VL   +                G+   +  
Sbjct: 295 ---SMASYSAMAIDLYSERKIGEAN----QVLDEMR--------------DRGFKPSLSI 333

Query: 409 LEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLI-IDFYGISKKADAALKAFHDD 467
            E  +  L R G VE   ++I +   +   +P  T+RL  I   G+ ++  +A    + +
Sbjct: 334 YEAKIAALCRCGGVEEAVKVIKEEMVEDSCVP--TVRLYNIVLKGLCREGKSAFAVGYLE 391

Query: 468 RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
           + +   +        YS L+  L    R  +A  +LE M+     P V+T++ L+    L
Sbjct: 392 K-MARQVGCVADKETYSILVDGLCCDGRFVEASGILERMLIRSSSPGVETYNTLIRGLCL 450

Query: 528 QGDE-KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLW 584
            G +   V  L  MV Q G  P   ++  L+ + C     SN+       E L+K LW
Sbjct: 451 MGRQYDAVIWLEEMVVQ-GKLPAVSVWDSLVASVC-----SNMTEAGVCSETLEK-LW 501


>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
 gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
          Length = 741

 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/369 (21%), Positives = 155/369 (42%), Gaps = 37/369 (10%)

Query: 112 LAKSQRNHELKTLIGDISSSKFL-NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLL 170
           L  + R  E   L+ D     F+ NV+V +  L+  Y ++GDLEL +  +   + +  L 
Sbjct: 189 LCGAGRAGEAVALLTDAMGKGFVPNVAV-YNALIDGYCSTGDLELAIDIFKGMQSKGCLP 247

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           +  +Y  ++  + K+GK   A+  + ++I+ G  PN  TYT +I+   + G L+ A  + 
Sbjct: 248 NVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLL 307

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEM 289
            ++    +       L+L++      R +EA+  L  +   G    + +  ++ + + + 
Sbjct: 308 HSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKS 367

Query: 290 GFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKAL 349
           G   GA+  +++++ +  + +   Y    D    EN                  L+  +L
Sbjct: 368 GKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENK----------------LLEAISL 411

Query: 350 ANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFK--SPETAWHFFCWVAYQPGYTHDVY 407
            N + E   +       A  V  T L+ K LR F+  SP+           +P    DV 
Sbjct: 412 LNDMIESGVQ-------ANAVPFTILIDKHLREFRSDSPKMISDRMAAAGVKP----DVV 460

Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY---GISKKADAALKAF 464
                +    + G +E  + ++ ++   G+R   +T   +I  Y   G+  +A ++LK  
Sbjct: 461 TYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKNM 520

Query: 465 HDDRTLCGP 473
            D+   C P
Sbjct: 521 IDNG--CKP 527



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 89/456 (19%), Positives = 173/456 (37%), Gaps = 48/456 (10%)

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
           +LS       R  + +  +Y  +++ Y   G    A      ++  G  P+S  YT  + 
Sbjct: 58  MLSDMESLAARMPVRNLHTYTTLINAYCHAGDLPAAKRHLSSLLRAGLAPDSHAYTSFVL 117

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                G    A  +F  +P     RT   Y  L++G  G     EA ++   M  DG  P
Sbjct: 118 GYCRTGLFAHACRLFLLMPQRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAP 177

Query: 276 -GRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRI 334
                 + +  +   G    A   L + +    + NV  Y +   D      D    + I
Sbjct: 178 DSHVYSIMVHGLCGAGRAGEAVALLTDAMGKGFVPNVAVY-NALIDGYCSTGDLELAIDI 236

Query: 335 AYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFC 394
             G+Q K  L             P V +          T+L+C   +  K  E A   + 
Sbjct: 237 FKGMQSKGCL-------------PNVRTY---------TQLICGFCKSGKV-ERAMVLYS 273

Query: 395 WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS 454
            +  + G   +V     ++      GH+E   RL+  + + G+     T  ++ID     
Sbjct: 274 RM-IEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKH 332

Query: 455 KKADAALKAFHDDRTLCGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
            + + A       +   G + +  +    ++Y+S++  L K  +   A N+++++I  G 
Sbjct: 333 GRIEEA-------QQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGF 385

Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--------- 562
           VPD   +S L+     +        L + + ++GV+ +A  F +LI  + +         
Sbjct: 386 VPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTILIDKHLREFRSDSPKM 445

Query: 563 ---YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
               ++ + + PD  T  +  +S  ++GR ++A ++
Sbjct: 446 ISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESM 481



 Score = 45.4 bits (106), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 16/123 (13%)

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           AI++ + M   G +P+V+T++ L+  F   G  +    L+S + + G+ P+   +  LIQ
Sbjct: 233 AIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQ 292

Query: 559 AYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA----AAVEERCEKI 602
             C              +    L P+  T  +L  +L K GR +EA     ++ ++  K+
Sbjct: 293 GQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKV 352

Query: 603 NDV 605
           N V
Sbjct: 353 NQV 355


>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
          Length = 442

 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 94/451 (20%), Positives = 173/451 (38%), Gaps = 42/451 (9%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+      G +   LS  ++   R       +YNI++    K     +A+E    +  EG
Sbjct: 13  LIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEG 72

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             PN+ TY V+++ +   G +D ALE+   LP    K ++  Y  +++G    ER+ +A 
Sbjct: 73  CTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDAD 132

Query: 263 SLLNEMRDDGKFPGRA-MRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDD- 320
            L+ EM  +   P  A   V +  +   G +Q A + L +M       N+  Y    +  
Sbjct: 133 ELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGL 192

Query: 321 DEDENDDNNSGV---RIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVC 377
            E  N D   G+     +YG +                  P++V+      +    + +C
Sbjct: 193 CEQRNVDGAMGLLSKMKSYGCK------------------PDIVT------YNTLLKGLC 228

Query: 378 KVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM 437
              R   + E   +       Q G   D      ++  L + G +     +  ++   G 
Sbjct: 229 SAARWVDAEELMDNMT-----QNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGC 283

Query: 438 RLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDF 497
                T   II     + K D AL+ F++          F    +Y  L   L       
Sbjct: 284 TPNSITYSTIISGLAKATKLDQALELFNEMGH-----KGFNPDKIYQLLAECLNDDDTIE 338

Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           +AI  + ++  SGI P    ++ ++      G  +    + + +  +G  PD   + +LI
Sbjct: 339 EAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILI 398

Query: 558 Q--AYCKYLSNS-NLMPDAATKELLKKSLWK 585
           +  AY  YL+ +  L+    ++++L  SL K
Sbjct: 399 EGLAYEGYLNEARELLIKLCSRDVLVNSLIK 429



 Score = 43.1 bits (100), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 41/79 (51%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+ TL +  +  DA++VL++M+  G  PDV T++ L+         +   +L  ++R
Sbjct: 10  YNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMR 69

Query: 543 QNGVEPDAYMFKVLIQAYC 561
             G  P+   + VL+   C
Sbjct: 70  AEGCTPNNVTYNVLMDGMC 88



 Score = 42.4 bits (98), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 2/141 (1%)

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
           NV+ N   LM      GD++  L             ST +YN V+       +  +A E 
Sbjct: 77  NVTYNV--LMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADEL 134

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
             +++ E   PN  T+ V+I  L   G L  A+++   +           Y  ++ G   
Sbjct: 135 VTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCE 194

Query: 255 VERFDEAKSLLNEMRDDGKFP 275
               D A  LL++M+  G  P
Sbjct: 195 QRNVDGAMGLLSKMKSYGCKP 215



 Score = 38.9 bits (89), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 43/228 (18%), Positives = 91/228 (39%), Gaps = 35/228 (15%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + + L    N D A+ ++  +KS      +  T + L   L  + R  + + L+ +++ +
Sbjct: 188 IINGLCEQRNVDGAMGLLSKMKSY-GCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQN 246

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK---- 187
             L  +V F  L+ +    G +   +  + +   +    ++ +Y+ ++S  AK  K    
Sbjct: 247 GCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQA 306

Query: 188 ----------NF--------------------EAVETFRQVIDEGAIPNSRTYTVMIEHL 217
                      F                    EA++T R++ D G  P++  Y  ++  L
Sbjct: 307 LELFNEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGL 366

Query: 218 VNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL 265
              GK + A+++ + +           Y+IL+EG       +EA+ LL
Sbjct: 367 CRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELL 414


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 105/526 (19%), Positives = 202/526 (38%), Gaps = 69/526 (13%)

Query: 119 HELKTL------IGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
           HE+K L        D+  S+ L   ++F  LM         +LV+S + +  ++      
Sbjct: 53  HEIKGLEDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIPCDV 112

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            S+NI++  +    K   A+ TF ++   G  P+  T++ ++  L    ++  AL++F  
Sbjct: 113 YSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQ 172

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGF 291
           +     +     +  L+ G     R  EA +LL+ M +DG  P +      ++ M ++G 
Sbjct: 173 M----CRPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGD 228

Query: 292 IQGANEFLREMLPDKRIK-NVRYYE---DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPK 347
              A   LR+M     IK NV  Y    DG   D   +D +N          L   +  K
Sbjct: 229 TVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHN----------LYTEMQEK 278

Query: 348 ALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQP------- 400
            +   L  ++  +    +  ++    RL+ ++L    +P    +     AY         
Sbjct: 279 GIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEA 338

Query: 401 ----------GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF 450
                     G   +      M+    +   ++  + +   + + G      T   +ID 
Sbjct: 339 EELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDG 398

Query: 451 YGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSG 510
           Y  +K+ D   +  H + T  G ++       Y++L+           A+++ ++MI SG
Sbjct: 399 YCGAKRIDDGTELLH-EMTETGLVAD---TTTYNTLIHGFCLVGDLNAALDLSQQMISSG 454

Query: 511 IVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ-----------NGVEPDAYMFKVLIQA 559
           + PD+ T + L+      G  K   ++F  +++           NGVEPD   + +LI  
Sbjct: 455 VCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISG 514

Query: 560 YC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
                         K + +  ++P+  T   +   L K+ R  EA 
Sbjct: 515 LINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEAT 560



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 97/456 (21%), Positives = 174/456 (38%), Gaps = 64/456 (14%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++  +M+   + G+  EAV    +++++G  PN  TY  +++ +  +G   SAL +   +
Sbjct: 180 TFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKM 239

Query: 234 PLM-RIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGF 291
             M  IK     Y  +++G     R  +A +L  EM++ G FP        ++     G 
Sbjct: 240 EEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGR 299

Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALAN 351
              A   L+EML  K   NV  Y               S +  AY V+ + + + + L  
Sbjct: 300 WSEAQRLLQEMLERKINPNVVTY---------------SALINAY-VKERKFFEAEEL-- 341

Query: 352 TLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEK 411
             DE  P  + +     +       CK  R     + A H F +V    G + DV+    
Sbjct: 342 -YDEMLPRGI-IPNTITYNSMIDGFCKQNRL----DAAEHMF-YVMATKGCSPDVFTFNT 394

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL--------KA 463
           ++        ++    L+ ++   G+    +T   +I  + +    +AAL          
Sbjct: 395 LIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSG 454

Query: 464 FHDDRTLCGPI-------SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
              D   C  +        K K  L    + + + K K D DA        F+G+ PDVQ
Sbjct: 455 VCPDIVTCNTLLDGLCDNGKLKDAL---EMFKAMQKSKMDLDA-----SRPFNGVEPDVQ 506

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------L 564
           T++ L+     +G     ++L+  +   G+ P+   +  +I   CK             +
Sbjct: 507 TYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSM 566

Query: 565 SNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCE 600
            + +  PD  T   L     K GR  +   +E  CE
Sbjct: 567 GSKSFSPDVVTFNTLVSGYCKAGRVDD--GLELFCE 600



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 84/189 (44%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL 143
           SAL+++  ++   +   N     A+   L K  R+ +   L  ++           +  +
Sbjct: 231 SALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCM 290

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
           +  + +SG          E  +R    +  +Y+ +++ Y K  K FEA E + +++  G 
Sbjct: 291 IDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGI 350

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
           IPN+ TY  MI+      +LD+A  +F  +           +  L++G+ G +R D+   
Sbjct: 351 IPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTE 410

Query: 264 LLNEMRDDG 272
           LL+EM + G
Sbjct: 411 LLHEMTETG 419



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 1/132 (0%)

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           ++YNI++S     GK  EA E ++++   G +PN+ TY+ MI  L    +LD A ++F +
Sbjct: 506 QTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDS 565

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGF 291
           +           +  LV G+    R D+   L  EM   G        + L    +++G 
Sbjct: 566 MGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGN 625

Query: 292 IQGANEFLREML 303
           I GA +  +EM+
Sbjct: 626 INGALDIFQEMI 637



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/176 (20%), Positives = 72/176 (40%), Gaps = 11/176 (6%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T + L      ++R  +   L+ +++ +  +  +  +  L+  +   GDL   L    + 
Sbjct: 391 TFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQM 450

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV------ID-----EGAIPNSRTYTV 212
                     + N ++      GK  +A+E F+ +      +D      G  P+ +TY +
Sbjct: 451 ISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNI 510

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           +I  L+N GK   A E++  +P   I   +  Y  ++ G     R DEA  + + M
Sbjct: 511 LISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSM 566


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 120/582 (20%), Positives = 215/582 (36%), Gaps = 105/582 (18%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVT-----HALRSAPNADSALSIMEALKSNP 96
           LID +  A +++ ++ +   + DR + P  VT       L  A   + A S++ A+ +  
Sbjct: 267 LIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLL-AVMAER 325

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
           N   +  T + L + L K Q     K L+ +  SS F+   V                  
Sbjct: 326 NCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVV------------------ 367

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
                            +Y+I+     K G+  EA E  +++  +G  PN  TY  +I+ 
Sbjct: 368 -----------------TYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDG 410

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
           L    K + A E+  +L           Y I+V+G     R D+A  ++  M   G  P 
Sbjct: 411 LCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPS 470

Query: 277 RAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKN-------VRYYEDGSDDDEDENDDN 328
                AL E +   G +  A+   +EM+      +       V  Y   S   E +    
Sbjct: 471 VITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQ---- 526

Query: 329 NSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPET 388
               ++  G++  P++D              V + L D          CK  R  + P  
Sbjct: 527 ----KVVDGIRGTPYID--------------VYNALMDG--------YCKEGRLDEIPNV 560

Query: 389 AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII 448
                C      G   ++     ++  L +HG V+     +  + S G      +  +II
Sbjct: 561 FEDMACR-----GCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIII 615

Query: 449 DFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF 508
           D    + K   A +    D+ +   I    +   Y++L+    K +R  DA+ +L+ MI 
Sbjct: 616 DGLFKASKPKEARQVL--DQMIQAGIPPDAVT--YNTLMAQFCKEERFDDAVGILKNMIK 671

Query: 509 SGIVPDVQTFSGLMYHFALQ---GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--- 562
           +G+ PD  T++ L+   +     GD    + +  M+R   V      +  +I   CK   
Sbjct: 672 AGVDPDNVTYNTLISGLSQTNRLGDA--YELMHEMLRNGCVVSACTTYNTIIDRLCKEGC 729

Query: 563 ---------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
                    +++   +  +  T  +    L KEGR  EA+++
Sbjct: 730 LKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSL 771



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 103/538 (19%), Positives = 197/538 (36%), Gaps = 50/538 (9%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           +V  +L      D A ++++  K    F    S    L     K+ R  +   +  +I S
Sbjct: 165 LVIKSLCQMNQIDKAFTMLDKAKVR-GFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPS 223

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                 ++ +  ++  +    D +  L    E  +R       +YNI++    K  K  +
Sbjct: 224 PD----AIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDK 279

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A E   +++D G  P++ T+  +++ L   GK + A  + + +     + +   Y  L+ 
Sbjct: 280 ASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLIS 339

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIK 309
           G    +  D AK L++E    G  P       L + + + G I  A E ++EM       
Sbjct: 340 GLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTP 399

Query: 310 NVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF 369
           N+  Y    D           G+  A   + K +   ++L ++   + P+VV+      +
Sbjct: 400 NLVTYNTLID-----------GLCKASKTE-KAYELLESLVSS--GFVPDVVT------Y 439

Query: 370 VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
                 +CK  R  K+ +           + G T  V     ++  L R G V+    + 
Sbjct: 440 TIIVDGLCKEGRLDKALKMVEGML-----KRGCTPSVITYTALMEGLCRTGRVDEAHHIF 494

Query: 430 AKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRT 489
            ++ S            +++ Y  S +   A K           I     + +Y++L+  
Sbjct: 495 KEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDG-------IRGTPYIDVYNALMDG 547

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
             K  R  +  NV E+M   G VP+++T++ +M      G           +   G  PD
Sbjct: 548 YCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPD 607

Query: 550 AYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
              + ++I    K             +  + + PDA T   L     KE R  +A  +
Sbjct: 608 VVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGI 665



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 106/559 (18%), Positives = 207/559 (37%), Gaps = 58/559 (10%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           L P +V+  L+   +  +A+ +      +  F H+  T +     L ++  +  +  +  
Sbjct: 91  LQPAVVSRVLQRLKDPQTAI-VFFVWAGDRGFKHSTFTRNCFLQTLLENGSSDRIPAMFE 149

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
            +  + +   S  +  +++       ++   +  ++ + R        Y I+   + KTG
Sbjct: 150 RMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTG 209

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
           +  +A+E FR +      P++  Y  +I         D ALE    +   ++      Y 
Sbjct: 210 RLKDALEIFRNIPS----PDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYN 265

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLP- 304
           IL++G     + D+A  +L+EM D G  P        ++ + + G  + A+  L  M   
Sbjct: 266 ILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAER 325

Query: 305 DKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVV--S 362
           + R     Y    S   + +N D           + K  +D    +     + P+VV  S
Sbjct: 326 NCRPSCCTYNTLISGLCKQQNVD-----------RAKDLVDEFVSSG----FVPDVVTYS 370

Query: 363 LLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHV 422
           +LAD         +CK  R  ++ E             G T ++     ++  L +    
Sbjct: 371 ILADG--------LCKRGRIDEAFELVKEM-----SGKGCTPNLVTYNTLIDGLCKASKT 417

Query: 423 ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDD-RTLCGPISKFKLML 481
           E    L+  L S G      T  +I+D      + D ALK      +  C P      ++
Sbjct: 418 EKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPS-----VI 472

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
            Y++L+  L +  R  +A ++ +EM+      D   +  L+  +      K  QK+   +
Sbjct: 473 TYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGI 532

Query: 542 RQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRR 589
           R     P   ++  L+  YCK             ++    +P+  T  ++   L K G+ 
Sbjct: 533 RGT---PYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKV 589

Query: 590 KEAAAVEERCEKINDVPSL 608
            EA    E       VP +
Sbjct: 590 DEAFPFLESMHSAGCVPDV 608



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 54/103 (52%)

Query: 166 RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
           +   +++ ++N+++  + KT +  EA+     ++  G  P+  TY ++I  L  L K+D 
Sbjct: 811 KGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDK 870

Query: 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           A E+F  + +  I  +S  Y +L+ G  G  R  EA  +L EM
Sbjct: 871 AWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEM 913



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 24/175 (13%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++L+  L K +    A ++++E + SG VPDV T+S L      +G    + + F +V+
Sbjct: 334 YNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGR---IDEAFELVK 390

Query: 543 Q---NGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEG 587
           +    G  P+   +  LI   CK             L +S  +PD  T  ++   L KEG
Sbjct: 391 EMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEG 450

Query: 588 RRKEAAAVEERCEKINDVPSL----ALRGHIWAVSSADLTRVHSIYRNSITSIVT 638
           R  +A  + E   K    PS+    AL   +      D    H I++  ++   T
Sbjct: 451 RLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVD--EAHHIFKEMVSKDCT 503



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 72/153 (47%), Gaps = 8/153 (5%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           A S LS M+ L+   +++        +   L K+++      L  ++ + K L ++ +  
Sbjct: 768 ASSLLSEMDTLRDEVSYT-------TVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTF 820

Query: 142 NLM-QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
           NL+   ++ +  L+  L+      QR    S  +YN+V++   K  K  +A E F ++  
Sbjct: 821 NLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAV 880

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
            G + +S +YTV+I  L   G+   AL+V   +
Sbjct: 881 RGIVASSVSYTVLIYGLCGQGRGKEALQVLEEM 913



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 3/105 (2%)

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
           R    + +  +YN ++    K G   +A+     +   G   N+ TY + I+ L   G+L
Sbjct: 706 RNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRL 765

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           D A  + S +  +R + +   Y  ++ G    E+ D A  L  EM
Sbjct: 766 DEASSLLSEMDTLRDEVS---YTTVIIGLCKAEQLDRASKLAREM 807


>gi|15221893|ref|NP_173324.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42571539|ref|NP_973860.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75151479|sp|Q8GYP6.1|PPR49_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18900
 gi|26450017|dbj|BAC42129.1| unknown protein [Arabidopsis thaliana]
 gi|28827402|gb|AAO50545.1| unknown protein [Arabidopsis thaliana]
 gi|332191657|gb|AEE29778.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332191658|gb|AEE29779.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/270 (21%), Positives = 105/270 (38%), Gaps = 18/270 (6%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
           W P     L +           +VL+       A  FF W+  QPG+ HD +    M+  
Sbjct: 314 WGPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGN 373

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPI 474
           L R      +++L+ ++  DG +    T   +I  YG +   + A+  F+      C P 
Sbjct: 374 LGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPD 433

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
                 + Y +L+    K      A+++ + M   G+ PD  T+S ++      G     
Sbjct: 434 R-----VTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAA 488

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKS 582
            KLF  +   G  P+   + +++  + K             + N+   PD  T  ++ + 
Sbjct: 489 HKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEV 548

Query: 583 LWKEGRRKEAAAVEERCEKINDVPSLALRG 612
           L   G  +EA AV    ++ N +P   + G
Sbjct: 549 LGHCGYLEEAEAVFTEMQQKNWIPDEPVYG 578



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/248 (18%), Positives = 108/248 (43%), Gaps = 6/248 (2%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           +D +     L+   +  +AL     LK  P F H+  T   +   L ++++   +  L+ 
Sbjct: 329 IDAYQANQVLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLD 388

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
           ++        +V +  L+  Y  +  L   ++ +N+ ++        +Y  ++ ++AK G
Sbjct: 389 EMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAG 448

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
               A++ ++++   G  P++ TY+V+I  L   G L +A ++F  +           Y 
Sbjct: 449 FLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYN 508

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM--- 302
           I+++       +  A  L  +M++ G  P +    + +E +   G+++ A     EM   
Sbjct: 509 IMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQK 568

Query: 303 --LPDKRI 308
             +PD+ +
Sbjct: 569 NWIPDEPV 576


>gi|357499677|ref|XP_003620127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495142|gb|AES76345.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 412

 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 105/239 (43%), Gaps = 8/239 (3%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           L+D + + + + +A    S +S+          + N  + + +     K +   E   L 
Sbjct: 176 LMDGYCLVNEVNNAKGIFSTMSLR-------GVTANVWSYNIMINGFCKIKMTDEAMNLF 228

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
            ++   K +   V + +L+     SG +   L   +E   R +     +Y+ ++    K 
Sbjct: 229 EEMHCRKLIPDVVTYNSLINGLCKSGKISYALKLVDEMHDRGQPPDIITYSSLLDALCKN 288

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
            +  +A+   + + D+G  PN  TYT++I+ L   G+L+ A  +F  L +     T   Y
Sbjct: 289 HQVDKAIALLKNLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTY 348

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREML 303
            +++ GF     FDEA +LL++M+D+  FP      + +  + +      A   LREM+
Sbjct: 349 TVMIHGFCNKGLFDEALALLSKMKDNSCFPNALTYEIIIRSLFDNDENDKAENLLREMI 407



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 79/190 (41%), Gaps = 16/190 (8%)

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL 479
           G+V+    ++A +   G+     T   ++D Y +  + + A K      +L G  +    
Sbjct: 149 GNVKEAKNVLAMMMKQGINPNAVTYSSLMDGYCLVNEVNNA-KGIFSTMSLRGVTAN--- 204

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +  Y+ ++    K K   +A+N+ EEM    ++PDV T++ L+      G      KL  
Sbjct: 205 VWSYNIMINGFCKIKMTDEAMNLFEEMHCRKLIPDVVTYNSLINGLCKSGKISYALKLVD 264

Query: 540 MVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEG 587
            +   G  PD   +  L+ A C            K L +  + P+  T  +L   L K G
Sbjct: 265 EMHDRGQPPDIITYSSLLDALCKNHQVDKAIALLKNLKDQGIRPNMYTYTILIDGLCKGG 324

Query: 588 RRKEAAAVEE 597
           R ++A  + E
Sbjct: 325 RLEDAHNIFE 334



 Score = 43.1 bits (100), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 53/104 (50%), Gaps = 3/104 (2%)

Query: 169 LLSTESYNIVMSVYAKT---GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
           LLS+ + ++ + ++      G   EA      ++ +G  PN+ TY+ +++    + ++++
Sbjct: 129 LLSSYALHVALPLWYNANNEGNVKEAKNVLAMMMKQGINPNAVTYSSLMDGYCLVNEVNN 188

Query: 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
           A  +FS + L  +      Y I++ GF  ++  DEA +L  EM 
Sbjct: 189 AKGIFSTMSLRGVTANVWSYNIMINGFCKIKMTDEAMNLFEEMH 232


>gi|226505250|ref|NP_001147833.1| GTP binding protein [Zea mays]
 gi|195614010|gb|ACG28835.1| GTP binding protein [Zea mays]
 gi|413952711|gb|AFW85360.1| GTP binding protein [Zea mays]
          Length = 547

 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 112/252 (44%), Gaps = 25/252 (9%)

Query: 358 PEVVSLLADAKFVWTTRLVCKVLRHFKSPET-AWHFFCWVAYQPGYTHDVYALEKMLTIL 416
           P++ S L       +  LV +VL++  +    A  FF W   Q G+++       ++  L
Sbjct: 112 PKIASTLDALGVAVSPELVAEVLKNLSNAGMLALAFFRWAERQEGFSYTAEGFHNLIEAL 171

Query: 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK 476
            +     LV  L+  +R  G+ L   T +LI+  Y  ++K   A++ F         +S 
Sbjct: 172 GKIKQFRLVWSLVETMRCRGL-LSKDTFKLIVRRYARARKVKEAVETFEK-------MSI 223

Query: 477 FKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSG-IVPDVQTFSGLMYHFALQGDEK 532
           F L   +  Y+ L+ TL+K K+   A  + +EM   G  VPD++T++ LM  +  + D  
Sbjct: 224 FGLKTELSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLL 283

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLK 580
           +V+ ++  +   G+ PD   + +LI A+CK             +  S  MP      +L 
Sbjct: 284 MVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLI 343

Query: 581 KSLWKEGRRKEA 592
             L  E R  EA
Sbjct: 344 NGLGSEERLDEA 355



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 11/168 (6%)

Query: 108 LATVLAKSQRNHELKTLIGDIS-SSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR 166
           L   L+KS++  + + +  ++    KF+     +  LM+ +    DL +V + + E    
Sbjct: 236 LIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKTMYQEMIDA 295

Query: 167 AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
                  +Y +++S + K+GK  EA++ F ++   G +P+   Y ++I  L +  +LD A
Sbjct: 296 GIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGLGSEERLDEA 355

Query: 227 LEVF-----SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
           L+ F     S  P M +   +     +V  +    +F  A  +++EMR
Sbjct: 356 LKYFEHYKKSGFP-MEVPTCNA----VVGAYCRASKFQHAFKMVDEMR 398



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 87/205 (42%), Gaps = 6/205 (2%)

Query: 108 LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA 167
           L +   KS +  E   +  ++ +S  +     +  L+    +   L+  L  +  Y++  
Sbjct: 307 LISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGLGSEERLDEALKYFEHYKKSG 366

Query: 168 KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227
             +   + N V+  Y +  K   A +   ++      PNSRTY V++ +L+   K + A 
Sbjct: 367 FPMEVPTCNAVVGAYCRASKFQHAFKMVDEMRKCKVGPNSRTYDVILHYLIKSQKFEEAY 426

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQ 287
            +F  + +   +     Y ++V  F    R D A  +  +M + G  P   M  AL  + 
Sbjct: 427 NIFQRMGIDGCEPQLNTYTMMVGMFCSNGRVDMALKVWKQMGEKGVLPCMHMFSAL--IN 484

Query: 288 EMGF---IQGANEFLREMLPDKRIK 309
            + F   ++ A  + +EML DK I+
Sbjct: 485 GLCFENRLEEACVYFQEML-DKGIR 508



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 1/152 (0%)

Query: 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206
           Y  +   +      +E R+     ++ +Y++++    K+ K  EA   F+++  +G  P 
Sbjct: 381 YCRASKFQHAFKMVDEMRKCKVGPNSRTYDVILHYLIKSQKFEEAYNIFQRMGIDGCEPQ 440

Query: 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
             TYT+M+    + G++D AL+V+  +    +      +  L+ G     R +EA     
Sbjct: 441 LNTYTMMVGMFCSNGRVDMALKVWKQMGEKGVLPCMHMFSALINGLCFENRLEEACVYFQ 500

Query: 267 EMRDDG-KFPGRAMRVALERMQEMGFIQGANE 297
           EM D G + PG+      E + + G I  A E
Sbjct: 501 EMLDKGIRPPGQLFSNLKEALVQGGRISLAQE 532



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 4/135 (2%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLST-ESYNIVMSVYAKTGKNFEAVET-FRQVID 200
           L+   S S  ++   + + E +++ K +   ++Y ++M  +    K+   V+T ++++ID
Sbjct: 236 LIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHE-KDLLMVKTMYQEMID 294

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
            G  P+   Y ++I      GK D A++VF  +       +   Y +L+ G    ER DE
Sbjct: 295 AGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGLGSEERLDE 354

Query: 261 AKSLLNEMRDDGKFP 275
           A       +  G FP
Sbjct: 355 ALKYFEHYKKSG-FP 368



 Score = 39.3 bits (90), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 12/149 (8%)

Query: 133 FLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV 192
           F   +  F NL++         LV S     R R  LLS +++ +++  YA+  K  EAV
Sbjct: 157 FSYTAEGFHNLIEALGKIKQFRLVWSLVETMRCRG-LLSKDTFKLIVRRYARARKVKEAV 215

Query: 193 ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS------KQYL 246
           ETF ++   G       Y  +I+ L    ++  A  ++       +KR        K Y 
Sbjct: 216 ETFEKMSIFGLKTELSDYNWLIDTLSKSKQVKKAQAIYK-----EMKRKGKFVPDLKTYT 270

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +L+EG+   +     K++  EM D G  P
Sbjct: 271 VLMEGWGHEKDLLMVKTMYQEMIDAGIRP 299


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 103/491 (20%), Positives = 184/491 (37%), Gaps = 56/491 (11%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           +  + +L+  Y  + +++   + +     +  L +  SY  ++  + +  +  EA++ F 
Sbjct: 239 TFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFS 298

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           Q+ ++   P  RTYTV+I  L  LG+   AL +F  +     +     Y +L+       
Sbjct: 299 QMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDS 358

Query: 257 RFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
            FD+AK +LN M + G  P      AL +   + G    A E L  M  +    N R Y 
Sbjct: 359 NFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTY- 417

Query: 316 DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL 375
                     ++   G      +     L  K L   L    P VV+             
Sbjct: 418 ----------NELILGFCRGKNIHKAMSLLHKMLERKL---QPNVVTY------------ 452

Query: 376 VCKVLRHFKSPE----TAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAK 431
              +L H +  E    +A+     +  + G   D +     +  L + G VE    L   
Sbjct: 453 --NILIHGQCKEGDLGSAYKLLSLMN-ESGLVPDEWTYSVFIDTLCKRGLVEEARSLFES 509

Query: 432 LRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL---CGPISKFKLMLLYSSLLR 488
           L+  G++        +ID  G  K    +   F  D+ L   C P S     + Y+SL+ 
Sbjct: 510 LKEKGIKANEVIYSTLID--GYCKVGKVSDGRFLLDKMLSAGCVPNS-----ITYNSLID 562

Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548
              K K   +A  +++ MI   I P   T++ L+ +     +      +F  +   G  P
Sbjct: 563 GYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHP 622

Query: 549 DAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVE 596
           D +++   I AYC +            ++   +MPD     L   +  + G    A  + 
Sbjct: 623 DVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGIL 682

Query: 597 ERCEKINDVPS 607
           +R  ++   PS
Sbjct: 683 KRMHEVGCEPS 693



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 84/394 (21%), Positives = 146/394 (37%), Gaps = 79/394 (20%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YNI++    K G    A +    + + G +P+  TY+V I+ L   G ++ A  +F +L
Sbjct: 451 TYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESL 510

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
               IK     Y  L++G+  V +  + + LL++M   G  P                  
Sbjct: 511 KEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVP------------------ 552

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTL 353
             N      L D   K   + E                 R+   + +K  ++P A     
Sbjct: 553 --NSITYNSLIDGYCKEKNFKE----------------ARLLVDIMIKRDIEPAA----- 589

Query: 354 DEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKML 413
           D ++  + +LL D +F     +  ++L     P+     F + A+   Y           
Sbjct: 590 DTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDV----FIYTAFIHAY----------- 634

Query: 414 TILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA---LKAFHDDRTL 470
                HG ++  + LI K+ + G+        L ID YG     D A   LK  H+    
Sbjct: 635 ---CSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHE--VG 689

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD--VQTFSGLMYHFALQ 528
           C P S +     YS L++ L+  K    + +     + SG+  +     +  + Y F L 
Sbjct: 690 CEP-SYYT----YSCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFSNCWRRVDYEFTLD 744

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
                   LF  + ++G  P+A  +   I   CK
Sbjct: 745 --------LFGKMAEHGCAPNANTYGKFITGLCK 770



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 12/168 (7%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG-MRLPFSTIRLIIDFYGISKKA 457
           Q G + D +    ++    R+ +V+  + +   + + G +R   S   LI  F   +++ 
Sbjct: 232 QAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCE-ARRV 290

Query: 458 DAALKAF---HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
           D ALK F   H+D   C P  +      Y+ ++  L +  R  +A+N+ +EM      P+
Sbjct: 291 DEALKLFSQMHEDN--CWPTVR-----TYTVIIFALCQLGRKTEALNMFKEMTEKHCQPN 343

Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           V T++ L+       +    +K+ + + + G+ P    +  LI  YCK
Sbjct: 344 VHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCK 391



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 82/180 (45%), Gaps = 21/180 (11%)

Query: 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVD--RLIAKLRSDGMRLPFST 443
           P+TA  FF W+  + G+ H+V +   ML IL  +G++ + +  R++    +D        
Sbjct: 90  PQTALAFFNWIGQKHGFKHNVQSHVSMLNILVPNGYLRIAENMRILMIKSTDSSENALFV 149

Query: 444 IRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLML-LYSSLLRTLTKCKRDFDAINV 502
           + ++     ++++ DA                KFKL L  Y+ LL  L++     +  +V
Sbjct: 150 LEML---RSMNRRVDAF---------------KFKLTLRCYNMLLMLLSRFLMIDEMKSV 191

Query: 503 LEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
             EM+   + P++ T + ++  +   G+    +   S + Q G+  D + +  LI  YC+
Sbjct: 192 YLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCR 251



 Score = 42.7 bits (99), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 84/227 (37%), Gaps = 36/227 (15%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL 143
           SAL I+  ++SN N S N  T + L     + +  H+  +L+  +   K     V +  L
Sbjct: 397 SALEILSLMESN-NCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNIL 455

Query: 144 MQWYSTSGDLE-------------LVLSTWN---------------EYRQRAKLLSTES- 174
           +      GDL              LV   W                E R   + L  +  
Sbjct: 456 IHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGI 515

Query: 175 ------YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALE 228
                 Y+ ++  Y K GK  +      +++  G +PNS TY  +I+          A  
Sbjct: 516 KANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARL 575

Query: 229 VFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +   +    I+  +  Y IL++  +  + FD+A  + ++M   G  P
Sbjct: 576 LVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHP 622



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 45/220 (20%), Positives = 89/220 (40%), Gaps = 22/220 (10%)

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALK 462
           T +++ L  M+    + G+V   +  ++K+   G+ L   T   +I  Y  +K  DAA  
Sbjct: 201 TPNIFTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANA 260

Query: 463 AF---HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
            F    +   L   +S       Y++L+    + +R  +A+ +  +M      P V+T++
Sbjct: 261 IFLSMPNKGCLRNEVS-------YTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYT 313

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC--------KYLSNS---- 567
            +++     G +     +F  + +   +P+ + + VLI + C        K + N     
Sbjct: 314 VIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEK 373

Query: 568 NLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
            L+P   T   L     K+G    A  +    E  N  P+
Sbjct: 374 GLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPN 413


>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 721

 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 115/261 (44%), Gaps = 55/261 (21%)

Query: 347 KALANTLD--EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTH 404
           K +AN ++   WS E++S    +    +   V + LRH K P  A+ FF W+ ++ G++H
Sbjct: 60  KTIANLINYKPWSDELLSSFTTS---LSKTTVFQTLRHIKVPTKAFLFFNWI-HEKGFSH 115

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           +      ML IL R  ++ +    +                     Y I K+++  +K  
Sbjct: 116 NPQTYFIMLEILGREKNLNIARNFL---------------------YSIEKRSNGEVKL- 153

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
            +DR              ++SL+R+  +     +++ + E M   G+ P V TF+ ++  
Sbjct: 154 -EDR-------------FFNSLIRSYGEAGLFKESVKLFENMKLIGVSPGVVTFNSVLLV 199

Query: 525 FALQGDEKIVQKLF-SMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMP 571
              +G   + ++++  M++  GV+PD Y + +LI+ +C            K +++ +  P
Sbjct: 200 LLKRGRTNMAKEVYDEMLKTYGVKPDTYTYNILIRGFCKNSMVDEGFYFFKEMTSFDCDP 259

Query: 572 DAATKELLKKSLWKEGRRKEA 592
           D  T   L   L + G+ K A
Sbjct: 260 DVVTYNTLVDGLCRAGKIKVA 280



 Score = 43.1 bits (100), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 74/175 (42%), Gaps = 9/175 (5%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L++ Y    +++  L    E   R    +  +YN ++    +  K  +  E   Q
Sbjct: 299 VTYTTLIRGYCRKQEVDEALDILEEMNGRGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQ 358

Query: 198 VI-DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           +  D G+IP++ T+  +I      G LD A +VF  +  + +   S  Y +L+       
Sbjct: 359 MKGDGGSIPDACTFNTLINSHCCAGNLDEAFKVFENMKKLEVSADSASYSVLIRTLCQKG 418

Query: 257 RFDEAKSLLNEMRDD-------GKFP-GRAMRVALERMQEMGFIQGANEFLREML 303
            + +A+ L +E+ +        G  P   + +   + + E G  + A   LR+++
Sbjct: 419 DYGKAEMLFDELFEKEILLSSYGPKPLAASYKCMFQYLCENGKTKKAERVLRQLM 473



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA-LQGDEKIVQKLFSMV 541
           Y++L+R   + +   +A+++LEEM   G+ P++ T++ L+      Q  +K+ + L  M 
Sbjct: 301 YTTLIRGYCRKQEVDEALDILEEMNGRGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQMK 360

Query: 542 RQNGVEPDAYMFKVLIQAYC 561
              G  PDA  F  LI ++C
Sbjct: 361 GDGGSIPDACTFNTLINSHC 380


>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
          Length = 414

 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 69/131 (52%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F +++  Y  +G LE  ++ +N+      + +T +YN++++ Y K G    AVE ++Q
Sbjct: 154 VTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQ 213

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +      P+  T++ +I+     G+LD AL ++S +   RI+     + I++       R
Sbjct: 214 MTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNR 273

Query: 258 FDEAKSLLNEM 268
            DEA  LLNE+
Sbjct: 274 SDEAIGLLNEL 284



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/231 (20%), Positives = 101/231 (43%), Gaps = 28/231 (12%)

Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK-----K 456
           Y+ DV++   ++  + R G V+    L+ ++   G      T  +++D  G+ +     +
Sbjct: 78  YSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVD--GLCRTNEVSR 135

Query: 457 ADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
               L+    D  +C P      ++ ++S++    K  +  DA+ V  +M+ SGI+P+  
Sbjct: 136 GHEVLRRLQRD-GVCMP-----NVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTV 189

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------L 564
           T++ L+  +   GD     +++  + +    PD   F  LI  YC+             +
Sbjct: 190 TYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDM 249

Query: 565 SNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIW 615
           +   + P+  T  ++  SL K+ R  EA  +     ++N  P +A +  I+
Sbjct: 250 AQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLL---NELNLRPDIAPQAFIY 297



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 1/139 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F +L+  Y   G L+  L  W++  Q     +  +++I++    K  ++ EA+    +
Sbjct: 224 VTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNE 283

Query: 198 V-IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           + +     P +  Y  +I+ L   GK+D A  +   +     +     Y IL+ G+    
Sbjct: 284 LNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKS 343

Query: 257 RFDEAKSLLNEMRDDGKFP 275
           R  EA    +EM + G  P
Sbjct: 344 RISEAIMFFHEMVEAGCSP 362


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 100/232 (43%), Gaps = 6/232 (2%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVT-----HALRSAPNADSALSIMEALKSNP 96
           LID +  A +++ ++ +   + DR + P  VT       L  A   + A S++ A+ +  
Sbjct: 16  LIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLL-AVMAER 74

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
           N   +  T + L + L K Q     KTL+ +  SS F+   V +  L       G ++  
Sbjct: 75  NCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEA 134

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
                E        +  +YN ++    K  K  +A E    ++  G +P+  TYT++++ 
Sbjct: 135 FELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDG 194

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           L   G+LD AL++   +       +   Y  L+EG     R DEA  +  EM
Sbjct: 195 LCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEM 246



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 87/435 (20%), Positives = 164/435 (37%), Gaps = 45/435 (10%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YNI++    K  K  +A E   +++D G  P++ T+  +++ L   GK + A  + + +
Sbjct: 12  TYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVM 71

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFI 292
                + +   Y  L+ G    +  D AK+L++E    G  P       L + + + G I
Sbjct: 72  AERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRI 131

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
             A E ++EM  +    N+  Y    D           G+  A   + K +   + L ++
Sbjct: 132 DEAFELVKEMSGNGCTPNLVTYNTLID-----------GLCKASKTE-KAYELLETLVSS 179

Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
              + P+VV+      +      +CK  R  K+ +           + G T  V     +
Sbjct: 180 --GFVPDVVT------YTIIVDGLCKEGRLDKALKMVEGML-----KRGCTPSVITYTAL 226

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
           +  L R G V+    +  ++ S            +++ Y  S +   A K          
Sbjct: 227 MEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVD------- 279

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
            I     + +Y++L+    K  R  +  NV E+M   G VP+++T++ +M      G   
Sbjct: 280 GIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVD 339

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLK 580
                   +   G  PD   + ++I    K             +  + + PDA T   L 
Sbjct: 340 EAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLM 399

Query: 581 KSLWKEGRRKEAAAV 595
               KE R  +A  +
Sbjct: 400 AQFCKEERFDDAVGI 414



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 4/192 (2%)

Query: 113 AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
            KS R  E + ++  I  + +++V   +  LM  Y   G L+ + + + +   R  + + 
Sbjct: 266 CKSSRTKEAQKVVDGIRGTPYIDV---YNALMDGYCKEGRLDEIPNVFEDMACRGCVPNI 322

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           ++YNIVM    K GK  EA      +   G +P+  +Y ++I+ L    K   A +V   
Sbjct: 323 KTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQ 382

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGF 291
           +    I   +  Y  L+  F   ERFD+A  +L  M   G  P        +  + +   
Sbjct: 383 MIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNR 442

Query: 292 IQGANEFLREML 303
           +  A E + EML
Sbjct: 443 LGDAYELMHEML 454



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 106/551 (19%), Positives = 201/551 (36%), Gaps = 101/551 (18%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T + L   L K+ +  +   ++ ++        +V F ++M     +G  E   S     
Sbjct: 12  TYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVM 71

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETF-RQVIDEGAIPNSRTYTVMIEHLVNLGK 222
            +R    S  +YN ++S   K  +N +  +T   + +  G +P+  TY+++ + L   G+
Sbjct: 72  AERNCRPSCCTYNTLISGLCKQ-QNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGR 130

Query: 223 LDSALEVFSALP-----------------LMRIKRTSK------------------QYLI 247
           +D A E+   +                  L +  +T K                   Y I
Sbjct: 131 IDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTI 190

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDK 306
           +V+G     R D+A  ++  M   G  P      AL E +   G +  A+   +EM+   
Sbjct: 191 IVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKD 250

Query: 307 RIKN-------VRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPE 359
              +       V  Y   S   E +        ++  G++  P++D              
Sbjct: 251 CTADALAYVSLVNGYCKSSRTKEAQ--------KVVDGIRGTPYID-------------- 288

Query: 360 VVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH 419
           V + L D          CK  R  + P       C      G   ++     ++  L +H
Sbjct: 289 VYNALMDG--------YCKEGRLDEIPNVFEDMACR-----GCVPNIKTYNIVMDGLCKH 335

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL 479
           G V+     +  + S G      +  +IID    + K   A +    D+ +   I    +
Sbjct: 336 GKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVL--DQMIQAGIPPDAV 393

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ---GDEKIVQK 536
              Y++L+    K +R  DA+ +L+ MI +G+ PD  T++ L+   +     GD    + 
Sbjct: 394 T--YNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDA--YEL 449

Query: 537 LFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLW 584
           +  M+R   V      +  +I   CK            +++   +  +  T  +    L 
Sbjct: 450 MHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLC 509

Query: 585 KEGRRKEAAAV 595
           KEGR  EA+++
Sbjct: 510 KEGRLDEASSL 520



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 11/143 (7%)

Query: 166 RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
           +   +++ ++N+++  + KT +  EA+     ++  G  P+  TY ++I  L  L K+D 
Sbjct: 560 KGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDK 619

Query: 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR------DDGKFPGRAM 279
           A E+F  + +  I  +S  Y +L+ G  G  R  EA  +L EM       DD K   R +
Sbjct: 620 AWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEIDDLKC--RKL 677

Query: 280 RVALERMQEMGFIQGANEFLREM 302
            +AL R Q  G  + A E LR M
Sbjct: 678 YLAL-RGQGRG--EEAAELLRRM 697



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 24/175 (13%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++L+  L K +    A  +++E + SG VPDV T+S L      +G    + + F +V+
Sbjct: 83  YNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGR---IDEAFELVK 139

Query: 543 Q---NGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEG 587
           +   NG  P+   +  LI   CK             L +S  +PD  T  ++   L KEG
Sbjct: 140 EMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEG 199

Query: 588 RRKEAAAVEERCEKINDVPSL----ALRGHIWAVSSADLTRVHSIYRNSITSIVT 638
           R  +A  + E   K    PS+    AL   +      D    H I++  ++   T
Sbjct: 200 RLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVD--EAHHIFKEMVSKDCT 252



 Score = 43.1 bits (100), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 86/192 (44%), Gaps = 16/192 (8%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           A S LS M+ L+   +++        +   L K+++      L  ++ + K L ++ +  
Sbjct: 517 ASSLLSEMDTLRDEVSYT-------TVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTF 569

Query: 142 NLM-QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
           NL+   ++ +  L+  L+      QR    S  +YN+V++   K  K  +A E F ++  
Sbjct: 570 NLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAV 629

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIK----RTSKQYLILVEGFVGVE 256
            G + +S +YTV+I  L   G+   AL+V   +     +    +  K YL L     G  
Sbjct: 630 RGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEIDDLKCRKLYLAL----RGQG 685

Query: 257 RFDEAKSLLNEM 268
           R +EA  LL  M
Sbjct: 686 RGEEAAELLRRM 697



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 3/105 (2%)

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
           R    + +  +YN ++    K G   +A+     +   G   N+ TY + I+ L   G+L
Sbjct: 455 RNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRL 514

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           D A  + S +  +R + +   Y  ++ G    E+ D A  L  EM
Sbjct: 515 DEASSLLSEMDTLRDEVS---YTTVIIGLCKAEQLDRASKLAREM 556


>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
 gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 465

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 69/136 (50%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           F  L+  +  SG +   L   +E   R +  +  +Y+ ++    KT +  +AV    ++ 
Sbjct: 300 FNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALLTKLK 359

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           D+G  PN  TYT++I+ L   GKL+ A  +F  L +     T   Y+++  GF     FD
Sbjct: 360 DQGIRPNMHTYTILIDGLCTSGKLEDARNIFEDLLVKGYDITVVTYIVMFYGFCKKGLFD 419

Query: 260 EAKSLLNEMRDDGKFP 275
           EA +LL++M ++G  P
Sbjct: 420 EASALLSKMEENGCIP 435



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 47/83 (56%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +++YS+++  + K K   DA ++  EM+  GI P+V T+S L+  F   G  K    LF+
Sbjct: 227 VVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFN 286

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK 562
            +    ++PD Y F +L+  +CK
Sbjct: 287 KMISENIKPDVYTFNILVDVFCK 309



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 93/485 (19%), Positives = 179/485 (36%), Gaps = 79/485 (16%)

Query: 133 FLNVSVNFMNLMQWYSTS------GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
           F+  S + +NL+ + STS       D++  +S +N   ++        +N ++    K+ 
Sbjct: 42  FIPCSSSKINLIPYSSTSTTFHSNNDVDDAVSLFNCLLRQNPTPPAIEFNKILGSLVKS- 100

Query: 187 KNFEAVETFRQVID-EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
           K++  V    + ++  G  PN     ++I     LG +  A  VF+ +  M     +  +
Sbjct: 101 KHYHTVLYLSKKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYNPNTITF 160

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQGANEFLREMLP 304
             L++G     +  +A +  +++   G +F   +    ++ + ++G  + A + LR +  
Sbjct: 161 TTLIKGLCLKGQIHQALNFHDKLVALGFQFNQISYGTLIDGLCKVGETRAALDLLRRVDG 220

Query: 305 DKRIKNVRYYE---DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVV 361
                NV  Y    DG   D+  ND             L   +  K ++  +  +S  + 
Sbjct: 221 KLVQPNVVMYSTIIDGMCKDKHVND----------AFDLYSEMVSKGISPNVVTYSALIS 270

Query: 362 SLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGH 421
                 K      L  K++     P                  DVY    ++ +  + G 
Sbjct: 271 GFFTVGKLKDAVDLFNKMISENIKP------------------DVYTFNILVDVFCKSGK 312

Query: 422 VELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFK--- 478
           +    +L+ ++   G      T   I+D    + + D A+            ++K K   
Sbjct: 313 ISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVAL----------LTKLKDQG 362

Query: 479 ---LMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ 535
               M  Y+ L+  L    +  DA N+ E+++  G    V T+  + Y F  +G      
Sbjct: 363 IRPNMHTYTILIDGLCTSGKLEDARNIFEDLLVKGYDITVVTYIVMFYGFCKKGLFDEAS 422

Query: 536 KLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
            L S + +NG                        +PDA T EL+K SL+K+G    A  +
Sbjct: 423 ALLSKMEENGC-----------------------IPDAKTYELIKLSLFKKGENDMAEKL 459

Query: 596 EERCE 600
              CE
Sbjct: 460 HRECE 464


>gi|90399139|emb|CAJ86163.1| H0913C04.4 [Oryza sativa Indica Group]
 gi|125550286|gb|EAY96108.1| hypothetical protein OsI_17985 [Oryza sativa Indica Group]
          Length = 900

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 85/414 (20%), Positives = 170/414 (41%), Gaps = 25/414 (6%)

Query: 165 QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
           +R    S   + +++  YAK G    A  TF  +   G  PN+  +T ++        + 
Sbjct: 256 ERIPKPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMR 315

Query: 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD-GKFPGRAMRVAL 283
            AL     +    ++ T   Y IL+ GF  +     A +L  E +       G      +
Sbjct: 316 GALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNII 375

Query: 284 ERMQEMGFIQGANEFLREMLPDKRIKNVRYYED---GSDDDEDENDD-------NNSGVR 333
               + G ++ A E + EM  D     +  Y     G    ++EN            G +
Sbjct: 376 HAHCQSGNMERAEELVCEMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFK 435

Query: 334 ---IAYGVQLKPWLDPKALANTLD-EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETA 389
              I+YG  L  ++    +A  L      E   +  + K   T  ++     H      A
Sbjct: 436 PSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNK---TYSMLINGFIHLHDFANA 492

Query: 390 WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID 449
           +  F  +  + G   D      ++    + G+++    ++ K++ + M+      R II+
Sbjct: 493 FAIFEEM-LRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIE 551

Query: 450 FYGISKKADAALKAFH-DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF 508
            Y ++    +AL       R+ C P      ++ Y++L+  L +  +   A++VL++M  
Sbjct: 552 GYAVAGDMKSALDTLDLMRRSGCVPT-----VMTYNALIHGLVRKHKVQRAVSVLDKMSI 606

Query: 509 SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           +GI P+  T++ +M  +A  GD     + F+ ++++G++ D Y+++ L++A CK
Sbjct: 607 AGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCK 660



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 105/248 (42%), Gaps = 7/248 (2%)

Query: 65  RLLDP--FIVT---HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNH 119
           R ++P  F+ T   HA   A +   ALS +E +KS         T   L +  AK   + 
Sbjct: 292 RGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSE-GLELTIVTYSILISGFAKINDSQ 350

Query: 120 ELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM 179
               L  +  +       + + N++  +  SG++E       E  +       + Y+ +M
Sbjct: 351 SADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVCEMEEDGIDAPIDVYHSMM 410

Query: 180 SVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIK 239
             Y       + +  F ++ + G  P+  +Y  ++   V +GK+  AL +   +    IK
Sbjct: 411 HGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIK 470

Query: 240 RTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEF 298
             +K Y +L+ GF+ +  F  A ++  EM   G  P RA+  + +E   +MG +  A   
Sbjct: 471 HNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICI 530

Query: 299 LREMLPDK 306
           L +M  ++
Sbjct: 531 LEKMQKER 538



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 64/139 (46%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  L++    SG ++  L+   E   +    +T  YNI++  +A+ G  +EA +  +Q+ 
Sbjct: 651 YETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMK 710

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           ++G  PN  TYT  I      G +  A +V   +  + +K   K Y  L++G+  V   D
Sbjct: 711 EDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPD 770

Query: 260 EAKSLLNEMRDDGKFPGRA 278
            A     EM+  G  P  A
Sbjct: 771 RALKCFEEMKLAGLKPDEA 789



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 1/142 (0%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y I+M  YA +G   +A E F ++ + G   +   Y  ++      G++ SAL V   +
Sbjct: 615 TYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREM 674

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFI 292
              +I R +  Y IL++G+       EA+ L+ +M++DG  P        +    + G +
Sbjct: 675 SFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDM 734

Query: 293 QGANEFLREMLPDKRIKNVRYY 314
           Q A + + EM+      NV+ Y
Sbjct: 735 QRAEKVIEEMVDVGLKPNVKTY 756



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 6/163 (3%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G    V     ++  L R   V+    ++ K+   G+     T  +I+  Y  S     A
Sbjct: 573 GCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKA 632

Query: 461 LKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
            + F   +      S  KL + +Y +LLR   K  R   A+ V  EM F  I  +   ++
Sbjct: 633 FEYFTKIKE-----SGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYN 687

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            L+  +A +GD    + L   ++++GV P+ + +   I A CK
Sbjct: 688 ILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCK 730



 Score = 43.5 bits (101), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/138 (18%), Positives = 61/138 (44%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           +++  L+  Y   G +   LS   E        + ++Y+++++ +        A   F +
Sbjct: 439 ISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEE 498

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++  G  P+   Y ++IE    +G +D A+ +   +   R++ +++ +  ++EG+     
Sbjct: 499 MLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGD 558

Query: 258 FDEAKSLLNEMRDDGKFP 275
              A   L+ MR  G  P
Sbjct: 559 MKSALDTLDLMRRSGCVP 576



 Score = 39.7 bits (91), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 30/142 (21%), Positives = 57/142 (40%)

Query: 108 LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA 167
           L     KS R      +  ++S  K    +  +  L+  ++  GD+        + ++  
Sbjct: 654 LLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDG 713

Query: 168 KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227
              +  +Y   ++   K G    A +   +++D G  PN +TYT +I+    +   D AL
Sbjct: 714 VPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRAL 773

Query: 228 EVFSALPLMRIKRTSKQYLILV 249
           + F  + L  +K     Y  LV
Sbjct: 774 KCFEEMKLAGLKPDEASYHCLV 795


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 142/370 (38%), Gaps = 45/370 (12%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
            T SYN ++ V AK+G+      T+  ++  G +PN+ TY  ++  L    + + A  VF
Sbjct: 16  GTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVF 75

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA-LERMQEM 289
             +           Y IL+ G    ++ DEA  LLNEM D G  P      + L  + +M
Sbjct: 76  RGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKM 135

Query: 290 GFIQGANEFLREML-----PDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWL 344
           G ++ A +    M+     PD  + NV    DG     D  +        AY  +L   +
Sbjct: 136 GKLKEAVDLFSRMVYRGCPPDGVVYNVLI--DGFSKKGDMGE--------AY--RLFEEM 183

Query: 345 DPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSP-----ETAWHFFCWVA-- 397
             K    T+  ++  +       +F     L   +LR    P           FC +   
Sbjct: 184 LEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDM 243

Query: 398 ----------YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLI 447
                        G   DV +   ++  +   G      RL+ ++   G+     +  ++
Sbjct: 244 VEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNIL 303

Query: 448 IDFYGISKKADAALKAFHDDRTLCGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLE 504
           ID Y  S   D A+K F++       I K  L      YS+++  L +  +   A  V +
Sbjct: 304 IDGYSKSGALDHAIKLFYE-------IPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFK 356

Query: 505 EMIFSGIVPD 514
           +MI +G  PD
Sbjct: 357 DMIANGSAPD 366



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 91/471 (19%), Positives = 187/471 (39%), Gaps = 40/471 (8%)

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
           S  +++H   + + L  VLAKS R   +     D+ ++  +  +  +  L++    +   
Sbjct: 9   SQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRF 68

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           E   S +     +    +  SY+I+++   +  K  EA E   ++ID G  PN  TY  +
Sbjct: 69  EEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSL 128

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           +  L  +GKL  A+++FS +           Y +L++GF       EA  L  EM + G 
Sbjct: 129 LSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGC 188

Query: 274 FPG----RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNN 329
            P      ++     R  E G +Q      ++ML    + N+  + +  D      D   
Sbjct: 189 IPTVFTYNSLLSGFSRKGEFGRVQ---SLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVE 245

Query: 330 SGVRIAYGVQLKPWLDPKALANTLD--EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPE 387
           +          + +L+ ++L    D   ++  +  + +  K     RL+ +++R    P 
Sbjct: 246 A---------HRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGP- 295

Query: 388 TAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLI 447
                            D+ +   ++   ++ G ++   +L  ++   G+     +   I
Sbjct: 296 -----------------DIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTI 338

Query: 448 IDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMI 507
           ID    + K  AA   F  D    G      +++    L+  L + +R  ++  + + M+
Sbjct: 339 IDCLCRAGKVGAAFVVFK-DMIANGSAPDAAVVI---PLVIGLCRGERLTESCELFQAMV 394

Query: 508 FSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
               VP +  ++ LMY          V ++F  + + G  PD  + KV+++
Sbjct: 395 KFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILE 445



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 20/179 (11%)

Query: 392 FFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY 451
           FF W   Q  Y H   +   +L +LA+ G  + V      + + G  +P +        Y
Sbjct: 3   FFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGC-VPNTYT------Y 55

Query: 452 GISKKADAALKAFHDDRTL--------CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVL 503
           G   ++    + F + R++        C P      +  YS L+  L + ++  +A  +L
Sbjct: 56  GYLLRSLCQAQRFEEARSVFRGMAAQGCSPN-----VFSYSILIAGLCRGQKVDEAAELL 110

Query: 504 EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            EMI  G  P+V T+  L+      G  K    LFS +   G  PD  ++ VLI  + K
Sbjct: 111 NEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSK 169



 Score = 45.4 bits (106), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 36/187 (19%), Positives = 78/187 (41%), Gaps = 4/187 (2%)

Query: 89  MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS 148
           M +L   P+     + +  + +      + HE + L+ ++  S      V++  L+  YS
Sbjct: 253 MRSLGCPPDVVSYNTLIRGMCS----KGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYS 308

Query: 149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSR 208
            SG L+  +  + E  +        SY+ ++    + GK   A   F+ +I  G+ P++ 
Sbjct: 309 KSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAA 368

Query: 209 TYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
               ++  L    +L  + E+F A+          +Y +L+      +R D+   + +E+
Sbjct: 369 VVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHEL 428

Query: 269 RDDGKFP 275
            + G  P
Sbjct: 429 TERGFSP 435



 Score = 41.2 bits (95), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/81 (24%), Positives = 41/81 (50%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y SLL  L K  +  +A+++   M++ G  PD   ++ L+  F+ +GD     +LF 
Sbjct: 122 VVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFE 181

Query: 540 MVRQNGVEPDAYMFKVLIQAY 560
            + + G  P  + +  L+  +
Sbjct: 182 EMLEKGCIPTVFTYNSLLSGF 202


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 88/486 (18%), Positives = 199/486 (40%), Gaps = 35/486 (7%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
             +HN  TL+ +     +  +     +++G +    +   +  F  L++     G +   
Sbjct: 118 GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEA 177

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           +   +   +        +YN +++   ++G    A++  R++ +     +  TY+ +I+ 
Sbjct: 178 VVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDS 237

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
           L   G +D+A+ +F  +    IK +   Y  LV G     ++++   LL +M      P 
Sbjct: 238 LCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPN 297

Query: 277 R-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIA 335
                V L+   + G +Q ANE  +EM+      N+  Y    D    +N  + +   + 
Sbjct: 298 VITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLD 357

Query: 336 YGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCW 395
             V+              ++ SP++V+  +  K     + V   ++ F++          
Sbjct: 358 LMVR--------------NKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNIS-------- 395

Query: 396 VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455
              + G   +      ++    + G ++L + L  ++ S G+     T  +++D    + 
Sbjct: 396 ---KRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNG 452

Query: 456 KADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
           K + AL+ F D +      SK  L +++Y++++  + K  +  DA N+   +   G+ P+
Sbjct: 453 KLEKALEIFEDLQK-----SKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPN 507

Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAA 574
           V T++ ++     +G       L   + ++G  P+   +  LI+A   +L + +L   A 
Sbjct: 508 VMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRA---HLRDGDLTASAK 564

Query: 575 TKELLK 580
             E +K
Sbjct: 565 LIEEMK 570



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 85/193 (44%), Gaps = 1/193 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D+A+S+ + +++      +  T ++L   L K+ + ++   L+ D+ S + +   + F  
Sbjct: 245 DAAISLFKEMET-KGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNV 303

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  +   G L+     + E   R    +  +YN +M  Y    +  EA      ++   
Sbjct: 304 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  T+T +I+    + ++D  ++VF  +    +   +  Y ILV+GF    +   A+
Sbjct: 364 CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAE 423

Query: 263 SLLNEMRDDGKFP 275
            L  EM   G  P
Sbjct: 424 ELFQEMVSHGVLP 436



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 84/203 (41%), Gaps = 11/203 (5%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           +V     +L +  + G ++  + L  ++ + G+     T   ++D Y +  +   A    
Sbjct: 297 NVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML 356

Query: 465 H-DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
               R  C P      ++ ++SL++     KR  D + V   +   G+V +  T+S L+ 
Sbjct: 357 DLMVRNKCSPD-----IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQ 411

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSL 583
            F   G  K+ ++LF  +  +GV PD   + +L+   C    N  L       E L+KS 
Sbjct: 412 GFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLC---DNGKLEKALEIFEDLQKSK 468

Query: 584 WKEGRRKEAAAVEERCE--KIND 604
              G       +E  C+  K+ D
Sbjct: 469 MDLGIVMYTTIIEGMCKGGKVED 491



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 13/117 (11%)

Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
           K+D DAI + +EMI S  +P +  FS      A      +V      +  NG+  + Y  
Sbjct: 68  KKD-DAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTL 126

Query: 554 KVLIQAYCKYLSNS------------NLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
            ++I  +C+                    PD  T   L K L+ EG+  EA  + +R
Sbjct: 127 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDR 183


>gi|334182677|ref|NP_001185030.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332191659|gb|AEE29780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 886

 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/270 (21%), Positives = 105/270 (38%), Gaps = 18/270 (6%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
           W P     L +           +VL+       A  FF W+  QPG+ HD +    M+  
Sbjct: 314 WGPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGN 373

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPI 474
           L R      +++L+ ++  DG +    T   +I  YG +   + A+  F+      C P 
Sbjct: 374 LGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPD 433

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
                 + Y +L+    K      A+++ + M   G+ PD  T+S ++      G     
Sbjct: 434 R-----VTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAA 488

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKS 582
            KLF  +   G  P+   + +++  + K             + N+   PD  T  ++ + 
Sbjct: 489 HKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEV 548

Query: 583 LWKEGRRKEAAAVEERCEKINDVPSLALRG 612
           L   G  +EA AV    ++ N +P   + G
Sbjct: 549 LGHCGYLEEAEAVFTEMQQKNWIPDEPVYG 578



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/248 (18%), Positives = 108/248 (43%), Gaps = 6/248 (2%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           +D +     L+   +  +AL     LK  P F H+  T   +   L ++++   +  L+ 
Sbjct: 329 IDAYQANQVLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLD 388

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
           ++        +V +  L+  Y  +  L   ++ +N+ ++        +Y  ++ ++AK G
Sbjct: 389 EMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAG 448

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
               A++ ++++   G  P++ TY+V+I  L   G L +A ++F  +           Y 
Sbjct: 449 FLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYN 508

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM--- 302
           I+++       +  A  L  +M++ G  P +    + +E +   G+++ A     EM   
Sbjct: 509 IMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQK 568

Query: 303 --LPDKRI 308
             +PD+ +
Sbjct: 569 NWIPDEPV 576


>gi|125555457|gb|EAZ01063.1| hypothetical protein OsI_23091 [Oryza sativa Indica Group]
          Length = 552

 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 88/194 (45%), Gaps = 2/194 (1%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D AL + EA+ ++P    N     A+   LA   +  E + L  ++  SK     + + +
Sbjct: 275 DCALKVWEAMVASP-VRPNVVLYSAMIGGLANFGKMTEAELLFREMIDSKCAPNIITYGS 333

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           ++Q Y   GD    LS W E      + +  SY+I+++     G+  +A+  ++ ++D G
Sbjct: 334 MIQGYFKIGDTSRALSVWEEMIGAGCMPNAVSYSILINGLCNVGRLKDAMMVWKHMLDRG 393

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVF-SALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
             P++  YT MI+ L   G +D  L +F   L           Y +L++G +  +    A
Sbjct: 394 CAPDTIAYTSMIKGLCVSGMVDGGLRLFYDMLASGHADPDVISYNVLLDGLLLAKDLPRA 453

Query: 262 KSLLNEMRDDGKFP 275
             LLN M D G  P
Sbjct: 454 MDLLNRMLDQGCDP 467



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/233 (18%), Positives = 96/233 (41%), Gaps = 2/233 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D AL I+  +    + + ++ T   + + LA + R  +   L+ ++ +   +     F  
Sbjct: 100 DVALRILHEIIPGWDLAPDKFTYSTVVSALADAGRVDDAVALVHEMVADGVVAAEA-FNP 158

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           +++    +GD++     +   + +  + +  +YN+++      G+   A+   R++  EG
Sbjct: 159 VLRAMLRAGDVKGAAKLFEFMQLKGCVPTAATYNVLVHGLLVCGRAGAAMGVMRRMEREG 218

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +P   TY  +++ LV  G++  A +V   +    + R    Y  ++ GF      D A 
Sbjct: 219 VVPGVMTYGAVVDGLVRCGRVKDAWKVAEEMERNGLARNEFVYSTVITGFCKSGEIDCAL 278

Query: 263 SLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
            +   M      P   +  A+   +   G +  A    REM+  K   N+  Y
Sbjct: 279 KVWEAMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIDSKCAPNIITY 331



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 13/131 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS+++  L    R  DA+ ++ EM+  G+V   + F+ ++      GD K   KLF  ++
Sbjct: 122 YSTVVSALADAGRVDDAVALVHEMVADGVVA-AEAFNPVLRAMLRAGDVKGAAKLFEFMQ 180

Query: 543 QNGVEPDAYMFKVLIQA--YC----------KYLSNSNLMPDAATKELLKKSLWKEGRRK 590
             G  P A  + VL+     C          + +    ++P   T   +   L + GR K
Sbjct: 181 LKGCVPTAATYNVLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVDGLVRCGRVK 240

Query: 591 EAAAVEERCEK 601
           +A  V E  E+
Sbjct: 241 DAWKVAEEMER 251



 Score = 42.7 bits (99), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 39/80 (48%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+  L  C R   A+ V+  M   G+VP V T+  ++      G  K   K+   + 
Sbjct: 191 YNVLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEEME 250

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
           +NG+  + +++  +I  +CK
Sbjct: 251 RNGLARNEFVYSTVITGFCK 270


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/271 (21%), Positives = 117/271 (43%), Gaps = 13/271 (4%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHA--------LRSAPNADSALSIMEALK 93
           L+D      R   + ++ +++  + + P +VT+         ++    A S  + M    
Sbjct: 272 LVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTM---- 327

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
           +    + N  + + +     K ++  E   L  ++     +   V + +L+     SG +
Sbjct: 328 AQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKI 387

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
              L   +E   R       +YN ++    K  +  +A+    ++ DEG  P+  TYT++
Sbjct: 388 SYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTIL 447

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           I+ L   G+L  A  +F  L +     T   Y ++++GF   + FD+A +LL++M D+G 
Sbjct: 448 IDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGC 507

Query: 274 FP-GRAMRVALERMQEMGFIQGANEFLREML 303
            P  +   + +  + E      A + LREM+
Sbjct: 508 IPNAKTYEIIILSLFEKDENDMAEKLLREMI 538



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 116/271 (42%), Gaps = 13/271 (4%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHA--------LRSAPNADSALSIMEALK 93
           +IDS+      N +  L S +  + + P +VT++        L    +A    + M + +
Sbjct: 202 IIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEE 261

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
            NP+      T   L     K  R  E K ++  +         V + +LM  Y     +
Sbjct: 262 INPDVY----TFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQV 317

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
               S +N   Q     + +SYNI+++ + K  K  EA+  F+++  +  IP+  TY  +
Sbjct: 318 NKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSL 377

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           I+ L   GK+  AL++   +    +      Y  +++      + D+A +LL +M+D+G 
Sbjct: 378 IDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGI 437

Query: 274 FPGR-AMRVALERMQEMGFIQGANEFLREML 303
            P      + ++ + + G ++ A     ++L
Sbjct: 438 QPDMYTYTILIDGLCKGGRLKDAQNIFEDLL 468



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 16/205 (7%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           DVY    ++    + G V+    ++A +   G++    T   ++D Y + K+ + A K+ 
Sbjct: 265 DVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKA-KSI 323

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
            +     G  +  +    Y+ ++    K K+  +A+N+ +EM    I+PDV T++ L+  
Sbjct: 324 FNTMAQGGVTANVQS---YNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDG 380

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPD 572
               G      KL   +   GV  D   +  ++ A CK             + +  + PD
Sbjct: 381 LCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPD 440

Query: 573 AATKELLKKSLWKEGRRKEAAAVEE 597
             T  +L   L K GR K+A  + E
Sbjct: 441 MYTYTILIDGLCKGGRLKDAQNIFE 465



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 94/461 (20%), Positives = 173/461 (37%), Gaps = 88/461 (19%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YN ++    K     EA + + +++ +G  P+  TY+ +I     LGKL+ A+ +F+ + 
Sbjct: 199 YNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMI 258

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQG 294
              I      + ILV+GF    R  EAK++L  M   G  P      +L  M     ++ 
Sbjct: 259 SEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSL--MDGYCLVKQ 316

Query: 295 ANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAY---GVQLKPWLDPKALAN 351
            N+        K I N       + + +  N   N   +I      + L   +  K +  
Sbjct: 317 VNK-------AKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIP 369

Query: 352 TLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEK 411
            +  ++  +  L    K  +  +LV ++                  +  G  HD      
Sbjct: 370 DVVTYNSLIDGLCKSGKISYALKLVDEM------------------HDRGVPHDKITYNS 411

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           +L  L ++  V+    L+ K++ +G++    T  ++ID                      
Sbjct: 412 ILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILID---------------------- 449

Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
                             L K  R  DA N+ E+++  G    V T++ ++  F    D 
Sbjct: 450 -----------------GLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFC---DN 489

Query: 532 KIVQK---LFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSL---WK 585
            +  K   L S +  NG  P+A  ++++I +   +  + N M +   +E++ + L   WK
Sbjct: 490 DLFDKALALLSKMEDNGCIPNAKTYEIIILSL--FEKDENDMAEKLLREMIARGLLFGWK 547

Query: 586 EGRRKEAAAVEERCEKINDVPSLALR-GHIWAVSSADLTRV 625
           +         + R    N  P L +R GH     S DL +V
Sbjct: 548 KAYCLFTRFFQRRS---NLYPPLEVRSGH----GSIDLGKV 581



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 47/83 (56%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +++Y++++ ++ K K   +A ++  EM+  GI PDV T+S L+  F + G       LF+
Sbjct: 196 VVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFN 255

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK 562
            +    + PD Y F +L+  +CK
Sbjct: 256 KMISEEINPDVYTFSILVDGFCK 278



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 40/79 (50%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           +  +L +L K      AI++  EM F+GI  D+ TF+ L+  F+  G       +F+ + 
Sbjct: 59  FGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANIL 118

Query: 543 QNGVEPDAYMFKVLIQAYC 561
           + G EP+A     LI+  C
Sbjct: 119 KKGYEPNAITLTTLIKGLC 137


>gi|297844848|ref|XP_002890305.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336147|gb|EFH66564.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 860

 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/270 (21%), Positives = 105/270 (38%), Gaps = 18/270 (6%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
           W P     L +           +VL+       A  FF W+  QPG+ HD +    M+  
Sbjct: 314 WGPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGN 373

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPI 474
           L R      +++L+ ++  DG +    T   +I  YG +   + A+  F+      C P 
Sbjct: 374 LGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPD 433

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
                 + Y +L+    K      A+++ + M   G+ PD  T+S ++      G     
Sbjct: 434 R-----VTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAA 488

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKS 582
            KLF  +   G  P+   + +++  + K             + N+   PD  T  ++ + 
Sbjct: 489 HKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEV 548

Query: 583 LWKEGRRKEAAAVEERCEKINDVPSLALRG 612
           L   G  +EA AV    ++ N +P   + G
Sbjct: 549 LGHCGYLEEAEAVFTEMQQKNWIPDEPVYG 578



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/248 (18%), Positives = 108/248 (43%), Gaps = 6/248 (2%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           +D +     L+   +  +AL     LK  P F H+  T   +   L ++++   +  L+ 
Sbjct: 329 IDAYQANQVLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLD 388

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
           ++        +V +  L+  Y  +  L   ++ +N+ ++        +Y  ++ ++AK G
Sbjct: 389 EMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAG 448

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
               A++ ++++   G  P++ TY+V+I  L   G L +A ++F  +           Y 
Sbjct: 449 FLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYN 508

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM--- 302
           I+++       +  A  L  +M++ G  P +    + +E +   G+++ A     EM   
Sbjct: 509 IMMDLHAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQK 568

Query: 303 --LPDKRI 308
             +PD+ +
Sbjct: 569 NWIPDEPV 576


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 106/494 (21%), Positives = 191/494 (38%), Gaps = 56/494 (11%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L++ + T+G+LE+ L  + E  +   L +  +YN ++  Y K  K  EA +  R +  +G
Sbjct: 209 LIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKG 268

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             PN  +Y V+I  L   G++    E+   +   R       +  L+ G+  V  F +A 
Sbjct: 269 LNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQAL 328

Query: 263 SLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDD 321
            L  EM  +G  P       L   M + G +  A EFL +M       N R Y    D  
Sbjct: 329 VLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGF 388

Query: 322 EDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSP-----EVVSLLADAKFVWTTRLV 376
             +       ++ AY  Q+   +       T+  ++       ++  + DA  +    + 
Sbjct: 389 SQQ-----GFLKQAY--QIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIE 441

Query: 377 CKVLRHFKSPETAWHFFC-----WVAYQ-------PGYTHDVYALEKMLTILARHGHVEL 424
              +    S  T    FC       A+Q        G + DV     ++  L +   +  
Sbjct: 442 RGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGE 501

Query: 425 VDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS 484
           V  L  ++ S G+     T   +I+ Y I    D AL+  HD+    G       ++ Y+
Sbjct: 502 VCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALR-LHDEMIQKGFSPD---IVTYN 557

Query: 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS---------------GLMYHFALQG 529
            L+    K  R  +A  +L ++++   VP+  T++                LM  F ++G
Sbjct: 558 VLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKG 617

Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKE 577
                 ++   + Q G + +  ++ V+I  + K             + +S   P + T  
Sbjct: 618 LMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIM 677

Query: 578 LLKKSLWKEGRRKE 591
            L KSL+ EG+  E
Sbjct: 678 ALAKSLYHEGKEVE 691



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 87/437 (19%), Positives = 164/437 (37%), Gaps = 51/437 (11%)

Query: 174 SYNIVMSVYAKTGKNFEAVE-TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           SYN ++    +T ++ +  E  F+++++ G  PN  TY ++I      G L+  L  F  
Sbjct: 169 SYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGE 228

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGF 291
           +           Y  +++ +  + +  EA  LL  M   G  P   +  V +  +   G 
Sbjct: 229 MERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQ 288

Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALAN 351
           ++  +E L EM   KR    RY  D                R+ +   +  + +      
Sbjct: 289 MKETSEILEEM--SKR----RYVPD----------------RVTFNTLINGYCNVGNFHQ 326

Query: 352 TLDEWSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYAL 409
            L   +  V + L+     +TT +  +CK     ++ E          +  G T+     
Sbjct: 327 ALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTT--- 383

Query: 410 EKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD--D 467
             ++   ++ G ++   +++ ++  +G      T   +I+ + I  + + A     +  +
Sbjct: 384 --LIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIE 441

Query: 468 RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
           R     +        YS+++    + +    A  +  EM+  GI PDV T+S L+     
Sbjct: 442 RGFIPDVVS------YSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCK 495

Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAAT 575
           Q     V  LF  +   G+ PD   +  LI AYC              +      PD  T
Sbjct: 496 QRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVT 555

Query: 576 KELLKKSLWKEGRRKEA 592
             +L     K+ R KEA
Sbjct: 556 YNVLINGFNKQSRTKEA 572



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 82/201 (40%), Gaps = 6/201 (2%)

Query: 76  LRSAPNADSALSIMEALKSNPNF-SHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFL 134
           LR    A   L +M     NPN  S+N      +   L +  +  E   ++ ++S  +++
Sbjct: 251 LRKIGEAFKLLRLMALKGLNPNLISYN-----VVINGLCREGQMKETSEILEEMSKRRYV 305

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
              V F  L+  Y   G+    L    E  +     +  +Y  +++   K G    A+E 
Sbjct: 306 PDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEF 365

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
             Q+ D G  PN RTYT +I+     G L  A ++   +       T   Y  L+ G   
Sbjct: 366 LDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCI 425

Query: 255 VERFDEAKSLLNEMRDDGKFP 275
           + R ++A  LL EM + G  P
Sbjct: 426 LGRMEDASGLLQEMIERGFIP 446



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 13/140 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF 538
           +L Y+++L  + + K+    A  + +EM+ SG+ P+V T++ L+  F   G+ ++    F
Sbjct: 167 VLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFF 226

Query: 539 SMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKE 586
             + +NG  P+   +  +I AYCK             ++   L P+  +  ++   L +E
Sbjct: 227 GEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCRE 286

Query: 587 GRRKEAAAVEERCEKINDVP 606
           G+ KE + + E   K   VP
Sbjct: 287 GQMKETSEILEEMSKRRYVP 306



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 21/202 (10%)

Query: 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
           +T  +L   L K +R  E+  L  ++ S       V + +L+  Y   GDL+  L   +E
Sbjct: 484 ATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDE 543

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
             Q+       +YN++++ + K  +  EA     +++ E ++PN  TY  +I++  N   
Sbjct: 544 MIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNN--- 600

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRV 281
               LE  SAL LM+             GF      +EA  +L  M   G K       V
Sbjct: 601 ----LEFKSALALMK-------------GFCMKGLMNEADRVLESMLQKGYKLNEEVYNV 643

Query: 282 ALERMQEMGFIQGANEFLREML 303
            +    ++G I+ A    +EML
Sbjct: 644 IIHGHSKVGNIEKAYNLYKEML 665



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 14/133 (10%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YSSL++ L K +R  +  ++ +EM+  G+ PD  T++ L+  + ++GD     +L   + 
Sbjct: 486 YSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMI 545

Query: 543 QNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKE---LLKKSLWKEGRRKEAA--AVEE 597
           Q G  PD   + VLI  + K          + TKE   LL K L++E    E     + +
Sbjct: 546 QKGFSPDIVTYNVLINGFNK---------QSRTKEAKRLLLKLLYEESVPNEITYNTLID 596

Query: 598 RCEKINDVPSLAL 610
            C  +    +LAL
Sbjct: 597 NCNNLEFKSALAL 609


>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 592

 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 91/431 (21%), Positives = 166/431 (38%), Gaps = 46/431 (10%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F  L+      GD+   +   +   +       ++Y ++++   K GK  EAV   R+
Sbjct: 147 VTFTILINGLCVKGDVGRAVELVDHVEKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRK 206

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + +    PN   Y+ +++ L   G +  AL +   +    IK     Y  L++G     R
Sbjct: 207 MEERNWNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGR 266

Query: 258 FDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
           + EA SLL+EM   G  P  +++ + ++ + + G I  A   +  M+    + +V  Y  
Sbjct: 267 WKEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNS 326

Query: 317 GSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLAD----AKFVWT 372
                                      +D   L N +DE +  V  L+         V  
Sbjct: 327 --------------------------LIDRYCLQNQMDE-ATRVFELMVSRGCLPDIVAY 359

Query: 373 TRLV---CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
           T L+   CK+    K+   A H    +  + G+T DV     ++    + G       L 
Sbjct: 360 TSLIHGWCKI----KNINKAMHLLDEM-IKVGFTPDVVTWTTLIGGFCQVGRPLAAKELF 414

Query: 430 AKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL-MLLYSSLLR 488
             +   G      T  +I+D    S+    AL  FH         S   L +++YS +L 
Sbjct: 415 LNMHKYGQVPNLQTCAIILDGLCKSQLLSEALSLFHAMEK-----SNLDLNIVIYSIILD 469

Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548
            +    +   A+ +   +   G+  +V  ++ ++  FA QG     + L S + +NG  P
Sbjct: 470 GMCSAGKLNTALELFSCLPAKGLQINVYAYTIMINGFAKQGLLDKAEDLLSNMEENGCMP 529

Query: 549 DAYMFKVLIQA 559
           D+  + V +Q 
Sbjct: 530 DSCTYNVFVQG 540


>gi|357128238|ref|XP_003565781.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Brachypodium distachyon]
          Length = 547

 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 123/293 (41%), Gaps = 39/293 (13%)

Query: 317 GSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLV 376
           G+D D   +D +    R+   V  +P               P + S L       +  LV
Sbjct: 85  GTDGDGPGSDVSEVAERVCRVVSSQP--------------EPRIASALDALGVNMSPELV 130

Query: 377 CKVLRHFKSPET-AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
            +VLR+  +    A  FF W   Q G+ +   +   ++  L +     LV  L+  +R  
Sbjct: 131 AEVLRNLSNAGILALAFFRWAERQQGFRYTAESFHNLIEALGKIKQFRLVWSLVEAMRCR 190

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL---MLLYSSLLRTLTK 492
           G+ L   T RLI+  Y  ++K   A++ F         +S F L   +  Y+ L+  L+K
Sbjct: 191 GL-LSKDTFRLIVRRYARARKVKEAVETFEK-------MSSFGLKADLSDYNWLIDVLSK 242

Query: 493 CKRDFDAINVLEEMIFSG-IVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAY 551
            K+   A  + +EM  +G  VPD++T++ LM  +  + D  +++ ++  +   G++PD  
Sbjct: 243 SKQVKKAHAIFKEMKRNGRFVPDLKTYTVLMEGWGHEKDLLMLKSVYQEMLDAGIKPDVV 302

Query: 552 MFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
            +  LI ++CK             +  +  MP      +L   L  E R  EA
Sbjct: 303 AYGTLISSFCKSGKCDEAIKVFREMEANGCMPSPHVYCMLINGLGSEERLDEA 355



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 82/174 (47%), Gaps = 11/174 (6%)

Query: 108 LATVLAKSQRNHELKTLIGDIS-SSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR 166
           L  VL+KS++  +   +  ++  + +F+     +  LM+ +    DL ++ S + E    
Sbjct: 236 LIDVLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVLMEGWGHEKDLLMLKSVYQEMLDA 295

Query: 167 AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
                  +Y  ++S + K+GK  EA++ FR++   G +P+   Y ++I  L +  +LD A
Sbjct: 296 GIKPDVVAYGTLISSFCKSGKCDEAIKVFREMEANGCMPSPHVYCMLINGLGSEERLDEA 355

Query: 227 LEVF-----SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           L+ F     S  P M +   +     +V  +    +F  A  +++EMR  G  P
Sbjct: 356 LKYFELSKASGFP-MEVPTCNA----VVGAYCRSSKFQHAFKMVDEMRKTGIGP 404



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 70/143 (48%), Gaps = 6/143 (4%)

Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           +   + N V+  Y ++ K   A +   ++   G  PN+RTY +++++L+   K++ A  V
Sbjct: 369 MEVPTCNAVVGAYCRSSKFQHAFKMVDEMRKTGIGPNARTYDIILQYLIKSQKIEEAYNV 428

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEM 289
           F  + +   +     Y ++V  F   ER D A  +  +M++ G  P   M  +L  +  +
Sbjct: 429 FQRMGMEGCEPQLNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSSL--INGL 486

Query: 290 GF---IQGANEFLREMLPDKRIK 309
            F   ++ A  + +EML DK I+
Sbjct: 487 CFENRLEEACVYFQEML-DKGIR 508



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 1/152 (0%)

Query: 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206
           Y  S   +      +E R+     +  +Y+I++    K+ K  EA   F+++  EG  P 
Sbjct: 381 YCRSSKFQHAFKMVDEMRKTGIGPNARTYDIILQYLIKSQKIEEAYNVFQRMGMEGCEPQ 440

Query: 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
             TYT+M+    +  ++D AL+V+  +    +      +  L+ G     R +EA     
Sbjct: 441 LNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSSLINGLCFENRLEEACVYFQ 500

Query: 267 EMRDDG-KFPGRAMRVALERMQEMGFIQGANE 297
           EM D G + PG+      E + E G I  A +
Sbjct: 501 EMLDKGIRPPGQLFSNLKEALIEGGRISLAQD 532



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 87/398 (21%), Positives = 156/398 (39%), Gaps = 46/398 (11%)

Query: 133 FLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV 192
           F   + +F NL++         LV S     R R  LLS +++ +++  YA+  K  EAV
Sbjct: 157 FRYTAESFHNLIEALGKIKQFRLVWSLVEAMRCRG-LLSKDTFRLIVRRYARARKVKEAV 215

Query: 193 ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL-MRIKRTSKQYLILVEG 251
           ETF ++   G   +   Y  +I+ L    ++  A  +F  +    R     K Y +L+EG
Sbjct: 216 ETFEKMSSFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVLMEG 275

Query: 252 FVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREM-----LPD 305
           +   +     KS+  EM D G  P   A    +    + G    A +  REM     +P 
Sbjct: 276 WGHEKDLLMLKSVYQEMLDAGIKPDVVAYGTLISSFCKSGKCDEAIKVFREMEANGCMPS 335

Query: 306 KRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVV--SL 363
             +  +     GS++  DE               LK +   KA    ++  +   V  + 
Sbjct: 336 PHVYCMLINGLGSEERLDE--------------ALKYFELSKASGFPMEVPTCNAVVGAY 381

Query: 364 LADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVE 423
              +KF    ++V ++ +    P                T+D+     +L  L +   +E
Sbjct: 382 CRSSKFQHAFKMVDEMRKTGIGPNA-------------RTYDI-----ILQYLIKSQKIE 423

Query: 424 LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLY 483
               +  ++  +G     +T  +++  +  +++ D ALK +   +           M ++
Sbjct: 424 EAYNVFQRMGMEGCEPQLNTYTMMVGMFCSNERVDMALKVWKQMKE----KGVLPCMHMF 479

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL 521
           SSL+  L    R  +A    +EM+  GI P  Q FS L
Sbjct: 480 SSLINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNL 517


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 165/417 (39%), Gaps = 26/417 (6%)

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
           L+L    ++E      +L+  + +         GK  +A    R++I +G IP++ TY+ 
Sbjct: 429 LDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSK 488

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           ++ +L N  K++ A  +F  +    +      Y I+V+ F      ++A+   NEMR+ G
Sbjct: 489 VLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVG 548

Query: 273 KFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYE---DGSDDDEDENDDN 328
             P      AL     +   +  ANE    ML +  + N+  Y    DG           
Sbjct: 549 CTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKAC 608

Query: 329 NSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSL--LADAKFVWTTRLVCKVLRHFKSP 386
               R+  G +  P +D        +   P VV+   L D          CK  R     
Sbjct: 609 QIFERMC-GSKDVPDVDMYFKQYDDNSERPNVVTYGALLDG--------FCKSHR----V 655

Query: 387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
           E A      ++ + G   +    + ++  L + G ++    +  ++   G      T   
Sbjct: 656 EEARKLLDAMSME-GCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSS 714

Query: 447 IIDFYGISKKADAALKAFHDD-RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEE 505
           +ID Y   K+ D A K         C P      +++Y+ ++  L K  +  +A  +++ 
Sbjct: 715 LIDRYFKVKRQDLASKVLSKMLENSCAPN-----VVIYTEMIDGLCKVGKTDEAYKLMQM 769

Query: 506 MIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           M   G  P+V T++ ++  F + G  +   +L   +   GV P+   ++VLI   CK
Sbjct: 770 MEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCK 826



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 86/204 (42%), Gaps = 7/204 (3%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           LLD F  +H +  A     A+S ME  + N      Q    AL   L K  +  E + + 
Sbjct: 645 LLDGFCKSHRVEEARKLLDAMS-MEGCEPN------QIVYDALIDGLCKVGKLDEAQEVK 697

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
            ++S   F      + +L+  Y      +L     ++  + +   +   Y  ++    K 
Sbjct: 698 TEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKV 757

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
           GK  EA +  + + ++G  PN  TYT MI+    +GK+++ LE+   +    +      Y
Sbjct: 758 GKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTY 817

Query: 246 LILVEGFVGVERFDEAKSLLNEMR 269
            +L++        D A +LL EM+
Sbjct: 818 RVLIDHCCKNGALDVAHNLLEEMK 841



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 80/203 (39%), Gaps = 1/203 (0%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T  AL     KS R  E + L+  +S        + +  L+      G L+      
Sbjct: 638 NVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 697

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            E  +     +  +Y+ ++  Y K  +   A +   ++++    PN   YT MI+ L  +
Sbjct: 698 TEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKV 757

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM- 279
           GK D A ++   +     +     Y  +++GF  + + +    LL  M   G  P     
Sbjct: 758 GKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTY 817

Query: 280 RVALERMQEMGFIQGANEFLREM 302
           RV ++   + G +  A+  L EM
Sbjct: 818 RVLIDHCCKNGALDVAHNLLEEM 840



 Score = 46.6 bits (109), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 12/138 (8%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS +L  L    +   A  + EEM   G+V DV T++ ++  F   G  +  +K F+ +R
Sbjct: 486 YSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMR 545

Query: 543 QNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRK 590
           + G  P+   +  LI AY K             + +   +P+  T   L     K G+ +
Sbjct: 546 EVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVE 605

Query: 591 EAAAVEERCEKINDVPSL 608
           +A  + ER     DVP +
Sbjct: 606 KACQIFERMCGSKDVPDV 623



 Score = 45.8 bits (107), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 64/128 (50%), Gaps = 11/128 (8%)

Query: 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID----EGAIPNS 207
           D+++    +++  +R  +++   Y  ++  + K+ +    VE  R+++D    EG  PN 
Sbjct: 622 DVDMYFKQYDDNSERPNVVT---YGALLDGFCKSHR----VEEARKLLDAMSMEGCEPNQ 674

Query: 208 RTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNE 267
             Y  +I+ L  +GKLD A EV + +       T   Y  L++ +  V+R D A  +L++
Sbjct: 675 IVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSK 734

Query: 268 MRDDGKFP 275
           M ++   P
Sbjct: 735 MLENSCAP 742



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 92/517 (17%), Positives = 189/517 (36%), Gaps = 58/517 (11%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N+  + +    L  + +  +  ++I ++    F+  +  +  ++ +   +  +EL    +
Sbjct: 447 NKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLF 506

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            E ++   +    +Y I++  + K G   +A + F ++ + G  PN  TYT +I   +  
Sbjct: 507 EEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKA 566

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR 280
            K+  A E+F  +           Y  L++G     + ++A  +   M      P   M 
Sbjct: 567 KKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMY 626

Query: 281 V-ALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED-----GSDDDEDENDDNNSGV-- 332
               +   E   +      L       R++  R   D     G + ++   D    G+  
Sbjct: 627 FKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCK 686

Query: 333 --RIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW 390
             ++    ++K  +       TL  +S  +       +    ++++ K+L +  +P    
Sbjct: 687 VGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVI 746

Query: 391 HF-----FCWV-----AY-------QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
           +       C V     AY       + G   +V     M+      G +E    L+ ++ 
Sbjct: 747 YTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMG 806

Query: 434 SDGMRLPFSTIRLIIDFY--------------------------GISKKADAALKAFHDD 467
           S G+   + T R++ID                            G  K  +   K F + 
Sbjct: 807 SKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIES 866

Query: 468 RTLCGPISK---FKLMLLYSSLLRTLTKCKRDFDAINVLEEM-IFSGIVPDV-QTFSGLM 522
             L   I +      + +Y  L+  L K +R   A+ +LEE+  FS  + D   T++ L+
Sbjct: 867 LGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLI 926

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
               L    +   +LFS + + GV P+   F  LI+ 
Sbjct: 927 ESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKG 963



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 86/225 (38%), Gaps = 34/225 (15%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G+  D     K+L  L     +EL   L  +++  G+     T  +++D +  +   + A
Sbjct: 478 GFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQA 537

Query: 461 LKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
            K F++ R + C P      ++ Y++L+    K K+   A  + E M+  G +P++ T+S
Sbjct: 538 RKWFNEMREVGCTPN-----VVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYS 592

Query: 520 GLMYHFALQGD-EKIVQKL---------------FSMVRQNGVEPDAYMFKVLIQAYCK- 562
            L+      G  EK  Q                 F     N   P+   +  L+  +CK 
Sbjct: 593 ALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKS 652

Query: 563 -----------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVE 596
                       +S     P+    + L   L K G+  EA  V+
Sbjct: 653 HRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 697


>gi|326528911|dbj|BAJ97477.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 913

 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 88/426 (20%), Positives = 175/426 (41%), Gaps = 27/426 (6%)

Query: 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT 211
           D + V+S +    +R    S   + +++  YAK G    A  TF  +   G  PN+  +T
Sbjct: 261 DWQAVVSAF----ERIPKPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFT 316

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
            ++        +  AL     +    I+ T   Y IL+ GF  +     A +L  E + +
Sbjct: 317 SLVHAYAVARDMRGALSCTEEMKAEGIELTIVTYSILISGFGKINDTQSADNLFKEAKTN 376

Query: 272 -GKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED---GSDDDEDEN-- 325
            G   G      +    + G +  A E + EM  D     +  Y     G    +DE   
Sbjct: 377 LGDLNGIIYSNIIHAHCQSGNMDRAEELVHEMEEDGIDAPIDAYHSMMHGYTIIQDEKKC 436

Query: 326 --------DDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVC 377
                   +   +   I+YG  +  ++    +A  +   S E+ S          + L+ 
Sbjct: 437 LIVFERLKECCFTPSIISYGCLINLYVKIGKVAKAI-AISKEMESSGIKHNNKTYSMLIS 495

Query: 378 KVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM 437
             + H      A+  F  +  + G   D      ++    + G+++   R++ K++ + M
Sbjct: 496 GFI-HLHDFTNAFRIFEEM-LKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERM 553

Query: 438 RLPFSTIRLIIDFYGISKKADAALKAFH-DDRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
           +      R II+ + ++     AL       R+ C P      ++ Y++L+  L +  + 
Sbjct: 554 QPSNRAFRPIIEGFAVAGDMKRALDILDLMRRSGCAPT-----VMTYNALIHGLIRKNQV 608

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
             A++VL +M  +GI P+  T++ +M  +A  GD     + F+ +++ G++ D Y+++ L
Sbjct: 609 ERAVSVLNKMSIAGITPNEHTYTIIMRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYETL 668

Query: 557 IQAYCK 562
           ++A CK
Sbjct: 669 LRACCK 674



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 62/139 (44%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  L++    SG ++  L+   E   +    +T  YNI++  +A+ G  +EA +  +Q+ 
Sbjct: 665 YETLLRACCKSGRMQSALAVTREMSSQKIARNTFVYNILIDGWARRGDVWEAADLMKQMK 724

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           ++G  PN  TYT  I      G +  A  V   +  + +K   K Y  L++G+      D
Sbjct: 725 EDGVPPNIHTYTSYINACCKAGDMQRAQTVIDEMSDVGLKPNLKTYTTLIKGWARASLPD 784

Query: 260 EAKSLLNEMRDDGKFPGRA 278
            A     EM+  G  P  A
Sbjct: 785 RALKCFEEMKLAGLKPDEA 803



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 84/449 (18%), Positives = 181/449 (40%), Gaps = 49/449 (10%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           + ++M  Y+   D +  L  +   ++     S  SY  ++++Y K GK  +A+   +++ 
Sbjct: 420 YHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLINLYVKIGKVAKAIAISKEME 479

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
             G   N++TY+++I   ++L    +A  +F  +    ++     Y +L+E F  +   D
Sbjct: 480 SSGIKHNNKTYSMLISGFIHLHDFTNAFRIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMD 539

Query: 260 EAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGS 318
            A  +L +M+ +   P  RA R  +E     G ++ A + L  M        V  Y    
Sbjct: 540 RAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALDILDLMRRSGCAPTVMTYN--- 596

Query: 319 DDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCK 378
                          + +G+  K  +          E +  V++ ++ A           
Sbjct: 597 --------------ALIHGLIRKNQV----------ERAVSVLNKMSIAGITPNEHTYTI 632

Query: 379 VLRHFKSP---ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           ++R + +      A+ +F  +  + G   DVY  E +L    + G ++    +  ++ S 
Sbjct: 633 IMRGYAATGDIAKAFEYFTKIK-EGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQ 691

Query: 436 GMRLPFSTIRLIIDFYGISKKADA-----ALKAFHDDRTLCGPISKFKLMLLYSSLLRTL 490
            +        ++ID  G +++ D       +K   +D     P +    +  Y+S +   
Sbjct: 692 KIARNTFVYNILID--GWARRGDVWEAADLMKQMKEDGV---PPN----IHTYTSYINAC 742

Query: 491 TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA 550
            K      A  V++EM   G+ P+++T++ L+  +A         K F  ++  G++PD 
Sbjct: 743 CKAGDMQRAQTVIDEMSDVGLKPNLKTYTTLIKGWARASLPDRALKCFEEMKLAGLKPDE 802

Query: 551 YMFKVLIQAYCKYLSNSNLMPDAATKELL 579
             +  L+ +    LS + +M  +    +L
Sbjct: 803 AAYHCLVTS---LLSRATVMEGSTYTGIL 828



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/254 (21%), Positives = 108/254 (42%), Gaps = 19/254 (7%)

Query: 65  RLLDP--FIVT---HALRSAPNADSALSIMEALKSNP------NFSHNQSTLHALATVLA 113
           R ++P  F+ T   HA   A +   ALS  E +K+         +S   S    +    +
Sbjct: 306 RGIEPNAFVFTSLVHAYAVARDMRGALSCTEEMKAEGIELTIVTYSILISGFGKINDTQS 365

Query: 114 KSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE 173
                 E KT +GD++        + + N++  +  SG+++      +E  +       +
Sbjct: 366 ADNLFKEAKTNLGDLNG-------IIYSNIIHAHCQSGNMDRAEELVHEMEEDGIDAPID 418

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y+ +M  Y       + +  F ++ +    P+  +Y  +I   V +GK+  A+ +   +
Sbjct: 419 AYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLINLYVKIGKVAKAIAISKEM 478

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFI 292
               IK  +K Y +L+ GF+ +  F  A  +  EM   G  P RA+  + +E   +MG +
Sbjct: 479 ESSGIKHNNKTYSMLISGFIHLHDFTNAFRIFEEMLKSGLQPDRAIYNLLIEAFCKMGNM 538

Query: 293 QGANEFLREMLPDK 306
             A   L +M  ++
Sbjct: 539 DRAIRILEKMQKER 552



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 26/138 (18%), Positives = 62/138 (44%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           +++  L+  Y   G +   ++   E        + ++Y++++S +        A   F +
Sbjct: 453 ISYGCLINLYVKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFTNAFRIFEE 512

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++  G  P+   Y ++IE    +G +D A+ +   +   R++ +++ +  ++EGF     
Sbjct: 513 MLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGD 572

Query: 258 FDEAKSLLNEMRDDGKFP 275
              A  +L+ MR  G  P
Sbjct: 573 MKRALDILDLMRRSGCAP 590


>gi|357124917|ref|XP_003564143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1285

 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 97/217 (44%), Gaps = 18/217 (8%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           + G+  D      +L   A+ G  + V+R+  +L   G +    T   +I  YG   + D
Sbjct: 198 EKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITYNTMIHMYGKMGRLD 257

Query: 459 AALKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
            AL  + + R L C P +     + Y+ L+ +L K  R  DA  VLEEM  +G+ P + T
Sbjct: 258 LALGLYDEMRALGCTPDA-----VTYTVLIDSLGKMDRISDAGKVLEEMADAGLKPTLVT 312

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ------------AYCKYLS 565
           FS L+  +A  G  +   + FS +  +GV+PD   + V++             A  + + 
Sbjct: 313 FSALICAYAKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIARSGDMRKLMALYQTMM 372

Query: 566 NSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKI 602
           N    PD A  +++  +L K     E  AV +  E +
Sbjct: 373 NDGYRPDNALYQVMLAALAKGNEYDEIEAVVQDMEVV 409



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 55/254 (21%), Positives = 97/254 (38%), Gaps = 47/254 (18%)

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD-------------------GMRLP 440
           PG T  V+    M+ + AR G  + V +L+  +R                     G   P
Sbjct: 59  PGATVQVF--NAMMGVYARSGRFDDVRQLLDAMRGQELEPDLVSFNTLINARAKSGCLAP 116

Query: 441 FSTIRLIIDFYGISKKADAA-----LKAFHDDRTLCGPISKFKLML---------LYSSL 486
            S   L+++   +  + D       + A      L   ++ F+ M+          Y+++
Sbjct: 117 GSAFDLLLEVRQVGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAM 176

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           +    +C +  DA  +  E++  G  PD  T++ L+Y FA +GD   V+++   + + G 
Sbjct: 177 VSVHGRCGKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGF 236

Query: 547 EPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAA 594
           + D   +  +I  Y K             +      PDA T  +L  SL K  R  +A  
Sbjct: 237 KKDGITYNTMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGK 296

Query: 595 VEERCEKINDVPSL 608
           V E        P+L
Sbjct: 297 VLEEMADAGLKPTL 310



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 1/130 (0%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN ++SV+ + GK  +A   FR+++++G  P++ TY  ++      G  D+   V   L
Sbjct: 172 TYNAMVSVHGRCGKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEEL 231

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFI 292
                K+    Y  ++  +  + R D A  L +EMR  G  P      V ++ + +M  I
Sbjct: 232 VRAGFKKDGITYNTMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRI 291

Query: 293 QGANEFLREM 302
             A + L EM
Sbjct: 292 SDAGKVLEEM 301



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 34/183 (18%), Positives = 75/183 (40%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
            F  +  T ++L    AK      ++ +  ++  + F    + +  ++  Y   G L+L 
Sbjct: 200 GFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITYNTMIHMYGKMGRLDLA 259

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           L  ++E R         +Y +++    K  +  +A +   ++ D G  P   T++ +I  
Sbjct: 260 LGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVLEEMADAGLKPTLVTFSALICA 319

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
               G+ + A+  FS +    +K     YL++++         +  +L   M +DG  P 
Sbjct: 320 YAKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIARSGDMRKLMALYQTMMNDGYRPD 379

Query: 277 RAM 279
            A+
Sbjct: 380 NAL 382



 Score = 38.9 bits (89), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 78/425 (18%), Positives = 174/425 (40%), Gaps = 65/425 (15%)

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNS----RTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++  Y  TGK+ E + +  Q I E  +P+S       ++M+  L    K+ +A++ +S++
Sbjct: 452 ILDAYETTGKHEEGL-SLLQFIRE-HVPSSCNLISECSIML--LCKNQKIAAAMQEYSSM 507

Query: 234 PLMRIKRTSKQ---YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEM 289
            +++     +    Y  L+      E F EA  + ++M+  G  P R +  ++     ++
Sbjct: 508 QMLKCGSFGQDCNLYEYLITCLEEAEFFPEASQVFSDMQFIGIEPSRKIYESMISAYCKL 567

Query: 290 GFIQGANEFLREMLPD--------KRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLK 341
           GF + A++ + E +           R+  +  Y         EN           G++ +
Sbjct: 568 GFPETAHQLMDEAVQSGISLNILSSRVTMIEAYGKIKLWQHAEN--------FVKGLKQE 619

Query: 342 PWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPG 401
           P +D +        W+  ++   A++      R V  ++                  + G
Sbjct: 620 PSIDRRI-------WNA-LIHAYAESGLYEHARAVFDIM-----------------IEKG 654

Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL 461
               + ++  M+  L   G ++ +  ++ +L+  G ++  ST+ L++D +  +      +
Sbjct: 655 PLPTIDSVNGMMRALIIDGRLDELYVIVQELQDMGFKISKSTVILMLDAFTKAGDIFEVM 714

Query: 462 KAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL 521
           K ++  +           M +Y S++  L + KR  D   ++ EM  +G  PD+   + L
Sbjct: 715 KIYNGMKE----AGYLPNMHIYRSMISLLCRNKRYRDVELMVVEMERAGFEPDLTILNTL 770

Query: 522 MYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAA---TKEL 578
           +  +   G+     +++  + + G+EP+   +  LI  Y +     NL P+       E+
Sbjct: 771 LLMYTGNGNFDKTVEVYHSILEAGLEPNEDTYNTLIVMYSR-----NLRPEEGFTLLNEM 825

Query: 579 LKKSL 583
            KK L
Sbjct: 826 GKKGL 830


>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
 gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
          Length = 1480

 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 100/217 (46%), Gaps = 12/217 (5%)

Query: 67  LDPFIVTH-----ALRSAPNADSALSI---MEALKSNPNFSHNQSTLHALATVLAKSQRN 118
           L P  +T+     A   A N + A  +   MEA    P+      T +A+ +V  +   +
Sbjct: 322 LRPDTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLW----TYNAMISVYGRCGLS 377

Query: 119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV 178
            + + L  D+ S  F   +V++ +L+  ++  G++E V   W E  +        +YN +
Sbjct: 378 GKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTM 437

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI 238
           + +Y K G+N  A++ +R +   G  P++ TYTV+I+ L    K+  A  V S +    +
Sbjct: 438 IHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTGV 497

Query: 239 KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           K T K Y  L+ G+    +  EA+   + M   G  P
Sbjct: 498 KPTLKTYSALICGYAKAGKPVEAEETFDCMLRSGIRP 534



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 79/163 (48%), Gaps = 4/163 (2%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G+  D  +   +L   AR G+VE V  +  ++   G      T   +I  YG   + + A
Sbjct: 391 GFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIHMYGKQGQNELA 450

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           L+ + D ++      +    + Y+ L+ +L K  +  +A  V+ EM+ +G+ P ++T+S 
Sbjct: 451 LQLYRDMQS----SGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTGVKPTLKTYSA 506

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY 563
           L+  +A  G     ++ F  + ++G+ PD   + V++  + ++
Sbjct: 507 LICGYAKAGKPVEAEETFDCMLRSGIRPDHLAYSVMLDIHLRF 549



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 78/162 (48%), Gaps = 4/162 (2%)

Query: 401  GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
            G +  V  +  +L  L   G ++ +  ++ +L+  G ++  S+I L++D +  +      
Sbjct: 843  GPSPTVDTINGLLQALIVDGRLDELYVVVQELQDMGFKISKSSILLMLDAFARAGNIFEV 902

Query: 461  LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
             K +H  +        F  M LY  + R L++ K+  D   +L EM  +G  PD+  ++ 
Sbjct: 903  KKIYHGMKA----AGYFPTMHLYRVMARLLSRGKQVRDVEAMLSEMEEAGFKPDLSIWNS 958

Query: 521  LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            ++  +    D +   +++  ++++G+EPD   +  LI  YC+
Sbjct: 959  VLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCR 1000



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 18/185 (9%)

Query: 424 LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLL 482
           L   L+ ++R  G+R    T   +I     +   + A K F D +   C P      +  
Sbjct: 309 LAIELLNEVRRSGLRPDTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPD-----LWT 363

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++++    +C     A  +  ++   G  PD  +++ L+Y FA +G+ + V++++  + 
Sbjct: 364 YNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMV 423

Query: 543 QNGVEPDAYMFKVLIQAYCKYLSN------------SNLMPDAATKELLKKSLWKEGRRK 590
           + G   D   +  +I  Y K   N            S   PDA T  +L  SL K  +  
Sbjct: 424 KIGFGKDEMTYNTMIHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIA 483

Query: 591 EAAAV 595
           EAA V
Sbjct: 484 EAAGV 488



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 86/411 (20%), Positives = 160/411 (38%), Gaps = 56/411 (13%)

Query: 135  NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
            N+S+ ++N+++ Y      +   S     RQR   +  + +N ++  YA +G    A   
Sbjct: 777  NISL-YVNVIEAYGRLKLWQKAESVAGNLRQRCITVDRKVWNALIEAYAASGCYERARAI 835

Query: 195  FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
            F  ++ +G  P   T   +++ L+  G+LD    V   L  M  K +    L++++ F  
Sbjct: 836  FNTMMRDGPSPTVDTINGLLQALIVDGRLDELYVVVQELQDMGFKISKSSILLMLDAFAR 895

Query: 255  VERFDEAKSLLNEMRDDGKFP--------------GRAMR---VALERMQEMGF---IQG 294
                 E K + + M+  G FP              G+ +R     L  M+E GF   +  
Sbjct: 896  AGNIFEVKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRDVEAMLSEMEEAGFKPDLSI 955

Query: 295  ANEFLRE--MLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAY--------GVQLKPWL 344
             N  L+    + D R K ++ Y+   +D  + ++D  + + + Y        G  L   +
Sbjct: 956  WNSVLKMYVAIEDFR-KTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEGFSLMHEM 1014

Query: 345  DPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTH 404
                L   LD +   V S           +LV +    F+  ++            G   
Sbjct: 1015 RVAGLEPKLDTYKSLVASF-------GKQQLVEQAEELFEELQSK-----------GCKL 1056

Query: 405  DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
            D      M+ I    G     +RL + ++  G+    +T+ L++  YG S +   A K  
Sbjct: 1057 DRSFYHTMMKIYRNSGSHSKAERLFSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVL 1116

Query: 465  HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD-AINVLEEMIFSGIVPD 514
             + +     +S     L YSS++    +   D++  I  L +M   G+ PD
Sbjct: 1117 SNLKETGSNLST----LPYSSVIDAYLR-NGDYNIGIQKLIQMKKEGLEPD 1162



 Score = 39.7 bits (91), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 86/408 (21%), Positives = 146/408 (35%), Gaps = 28/408 (6%)

Query: 85  ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
           AL + E L     +S N   L  + +VL K+ +      +      S    V V +  +M
Sbjct: 203 ALEVYEWLNLRHWYSPNARMLSTILSVLGKANQEALAVEVFMRAEPSAGNTVQV-YNAMM 261

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE--AVETFRQVIDEG 202
             Y+  G    V    +  R+R       S+N +++   K G      A+E   +V   G
Sbjct: 262 GVYARRGRFNKVQELLDLMRERGCKPDLVSFNTLINARLKAGAMMPNLAIELLNEVRRSG 321

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY--LILVEGFVGVERFDE 260
             P++ TY  +I        L+ A +VF  +     +     Y  +I V G  G+    +
Sbjct: 322 LRPDTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYGRCGLS--GK 379

Query: 261 AKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREML-----PDKRIKNVRYY 314
           A+ L N++   G FP   +    L      G ++   E   EM+      D+   N   +
Sbjct: 380 AEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIH 439

Query: 315 EDGSDDDEDEND-------DNNSGVRIAYGVQLKPWLDPKALANTLDEWS---PEVVSLL 364
             G    + +N+       D  S  R    V     +D     N + E +    E+++  
Sbjct: 440 MYGK---QGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTG 496

Query: 365 ADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVEL 424
                   + L+C   +  K  E    F C +  + G   D  A   ML I  R    + 
Sbjct: 497 VKPTLKTYSALICGYAKAGKPVEAEETFDCML--RSGIRPDHLAYSVMLDIHLRFNEPKR 554

Query: 425 VDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
              L  ++  DG+ L  S   L++       K +   +   D   +CG
Sbjct: 555 AMTLYKEMLHDGITLDHSLYELMLRTLRKVNKVEDIGRVIRDMEEICG 602


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 165/417 (39%), Gaps = 26/417 (6%)

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
           L+L    ++E      +L+  + +         GK  +A    R++I +G IP++ TY+ 
Sbjct: 429 LDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSK 488

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           ++ +L N  K++ A  +F  +    +      Y I+V+ F      ++A+   NEMR+ G
Sbjct: 489 VLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVG 548

Query: 273 KFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYE---DGSDDDEDENDDN 328
             P      AL     +   +  ANE    ML +  + N+  Y    DG           
Sbjct: 549 CTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKAC 608

Query: 329 NSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSL--LADAKFVWTTRLVCKVLRHFKSP 386
               R+  G +  P +D        +   P VV+   L D          CK  R     
Sbjct: 609 QIFERMC-GSKDVPDVDMYFKQYDDNSERPNVVTYGALLDG--------FCKSHR----V 655

Query: 387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
           E A      ++ + G   +    + ++  L + G ++    +  ++   G      T   
Sbjct: 656 EEARKLLDAMSME-GCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSS 714

Query: 447 IIDFYGISKKADAALKAFHDD-RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEE 505
           +ID Y   K+ D A K         C P      +++Y+ ++  L K  +  +A  +++ 
Sbjct: 715 LIDRYFKVKRQDLASKVLSKMLENSCAPN-----VVIYTEMIDGLCKVGKTDEAYKLMQM 769

Query: 506 MIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           M   G  P+V T++ ++  F + G  +   +L   +   GV P+   ++VLI   CK
Sbjct: 770 MEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCK 826



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 86/204 (42%), Gaps = 7/204 (3%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           LLD F  +H +  A     A+S ME  + N      Q    AL   L K  +  E + + 
Sbjct: 645 LLDGFCKSHRVEEARKLLDAMS-MEGCEPN------QIVYDALIDGLCKVGKLDEAQEVK 697

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
            ++S   F      + +L+  Y      +L     ++  + +   +   Y  ++    K 
Sbjct: 698 TEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKV 757

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
           GK  EA +  + + ++G  PN  TYT MI+    +GK+++ LE+   +    +      Y
Sbjct: 758 GKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTY 817

Query: 246 LILVEGFVGVERFDEAKSLLNEMR 269
            +L++        D A +LL EM+
Sbjct: 818 RVLIDHCCKNGALDVAHNLLEEMK 841



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 80/203 (39%), Gaps = 1/203 (0%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T  AL     KS R  E + L+  +S        + +  L+      G L+      
Sbjct: 638 NVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 697

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            E  +     +  +Y+ ++  Y K  +   A +   ++++    PN   YT MI+ L  +
Sbjct: 698 TEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKV 757

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM- 279
           GK D A ++   +     +     Y  +++GF  + + +    LL  M   G  P     
Sbjct: 758 GKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTY 817

Query: 280 RVALERMQEMGFIQGANEFLREM 302
           RV ++   + G +  A+  L EM
Sbjct: 818 RVLIDHCCKNGALDVAHNLLEEM 840



 Score = 46.6 bits (109), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 12/138 (8%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS +L  L    +   A  + EEM   G+V DV T++ ++  F   G  +  +K F+ +R
Sbjct: 486 YSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMR 545

Query: 543 QNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRK 590
           + G  P+   +  LI AY K             + +   +P+  T   L     K G+ +
Sbjct: 546 EVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVE 605

Query: 591 EAAAVEERCEKINDVPSL 608
           +A  + ER     DVP +
Sbjct: 606 KACQIFERMCGSKDVPDV 623



 Score = 45.8 bits (107), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 64/128 (50%), Gaps = 11/128 (8%)

Query: 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID----EGAIPNS 207
           D+++    +++  +R  +++   Y  ++  + K+ +    VE  R+++D    EG  PN 
Sbjct: 622 DVDMYFKQYDDNSERPNVVT---YGALLDGFCKSHR----VEEARKLLDAMSMEGCEPNQ 674

Query: 208 RTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNE 267
             Y  +I+ L  +GKLD A EV + +       T   Y  L++ +  V+R D A  +L++
Sbjct: 675 IVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSK 734

Query: 268 MRDDGKFP 275
           M ++   P
Sbjct: 735 MLENSCAP 742



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 92/517 (17%), Positives = 189/517 (36%), Gaps = 58/517 (11%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N+  + +    L  + +  +  ++I ++    F+  +  +  ++ +   +  +EL    +
Sbjct: 447 NKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLF 506

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            E ++   +    +Y I++  + K G   +A + F ++ + G  PN  TYT +I   +  
Sbjct: 507 EEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKA 566

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR 280
            K+  A E+F  +           Y  L++G     + ++A  +   M      P   M 
Sbjct: 567 KKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMY 626

Query: 281 V-ALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED-----GSDDDEDENDDNNSGV-- 332
               +   E   +      L       R++  R   D     G + ++   D    G+  
Sbjct: 627 FKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCK 686

Query: 333 --RIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW 390
             ++    ++K  +       TL  +S  +       +    ++++ K+L +  +P    
Sbjct: 687 VGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVI 746

Query: 391 HF-----FCWV-----AY-------QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
           +       C V     AY       + G   +V     M+      G +E    L+ ++ 
Sbjct: 747 YTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMG 806

Query: 434 SDGMRLPFSTIRLIIDFY--------------------------GISKKADAALKAFHDD 467
           S G+   + T R++ID                            G  K  +   K F + 
Sbjct: 807 SKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIES 866

Query: 468 RTLCGPISK---FKLMLLYSSLLRTLTKCKRDFDAINVLEEM-IFSGIVPDV-QTFSGLM 522
             L   I +      + +Y  L+  L K +R   A+ +LEE+  FS  + D   T++ L+
Sbjct: 867 LGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLI 926

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
               L    +   +LFS + + GV P+   F  LI+ 
Sbjct: 927 ESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKG 963



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 86/225 (38%), Gaps = 34/225 (15%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G+  D     K+L  L     +EL   L  +++  G+     T  +++D +  +   + A
Sbjct: 478 GFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQA 537

Query: 461 LKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
            K F++ R + C P      ++ Y++L+    K K+   A  + E M+  G +P++ T+S
Sbjct: 538 RKWFNEMREVGCTPN-----VVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYS 592

Query: 520 GLMYHFALQGD-EKIVQKL---------------FSMVRQNGVEPDAYMFKVLIQAYCK- 562
            L+      G  EK  Q                 F     N   P+   +  L+  +CK 
Sbjct: 593 ALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKS 652

Query: 563 -----------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVE 596
                       +S     P+    + L   L K G+  EA  V+
Sbjct: 653 HRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 697


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 86/426 (20%), Positives = 170/426 (39%), Gaps = 68/426 (15%)

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
            +++N V+    + G+  EA +   +++  G   ++ TY  ++  L  +G++D A  + +
Sbjct: 275 VQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLN 334

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL-NEMRDDGKFP-GRAMRVALERMQEM 289
            +P       +  Y  L+ G+V   RF+EAK LL N M   G  P      + ++ + + 
Sbjct: 335 KIP----NPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKK 390

Query: 290 GFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKAL 349
           G++  A E L EM+  +   NV                      I Y + +  +     L
Sbjct: 391 GYLVSALELLNEMVAKRFEPNV----------------------ITYTILINGFCKQGRL 428

Query: 350 ---ANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDV 406
              A  ++  S + +SL      V    L+C + +   + E A   F  ++ + G   D+
Sbjct: 429 EEAAEIVNSMSAKGLSL----NTVGYNCLICALCKD-GNIEEALQLFGEMSGK-GCKPDI 482

Query: 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD 466
           Y    ++  L ++  +E    L   +  +G+     T   ++  + +      A K   +
Sbjct: 483 YTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDE 542

Query: 467 ----------------DRTLC--GPISK-------------FKLMLLYSSLLRTLTKCKR 495
                            + LC  G + K             F  ++  + L+  L +  +
Sbjct: 543 MLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGK 602

Query: 496 DFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV 555
             DA+  L++MI  G+ PD+ T++ L+      G  +    LF+ ++  G+ PDA  +  
Sbjct: 603 VNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNT 662

Query: 556 LIQAYC 561
           LI  +C
Sbjct: 663 LISRHC 668



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 90/205 (43%), Gaps = 12/205 (5%)

Query: 72  VTHALRSAPNADSALSIME---ALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDI 128
           + HAL        AL ++E    +   P+       +H L     ++ R HE   L+  +
Sbjct: 246 LIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLC----RAGRIHEAAKLLDRM 301

Query: 129 SSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN 188
               F   ++ +  LM      G ++   +  N+      +L    YN ++S Y  +G+ 
Sbjct: 302 LLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPNPNTVL----YNTLISGYVASGRF 357

Query: 189 FEAVET-FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
            EA +  +  ++  G  P++ T+ +MI+ LV  G L SALE+ + +   R +     Y I
Sbjct: 358 EEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTI 417

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDG 272
           L+ GF    R +EA  ++N M   G
Sbjct: 418 LINGFCKQGRLEEAAEIVNSMSAKG 442



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 100/237 (42%), Gaps = 19/237 (8%)

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           +CK+L       T+   F     Q GY+H   A   ++  L   G  +++++L+ +++ +
Sbjct: 69  LCKLLELPLDIPTSMELFQRAGAQKGYSHTFDACYLLIDKLGAVGDFKVIEKLLKQMKDE 128

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL--CGPISKFKLMLLYSSLLRTLTKC 493
           G+    S   LI+  YG +     A +   D   +  C P  K      Y+ +L  L   
Sbjct: 129 GLLFKESLFILIMKHYGKAGLPGQATRLLLDMWGVYSCDPTFKS-----YNVVLDILVDG 183

Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
                A NV  +M+  G+ P V TF  +M    +  +      L   + ++G  P++ ++
Sbjct: 184 DCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIY 243

Query: 554 KVLIQAYC---------KYLSNSNLM---PDAATKELLKKSLWKEGRRKEAAAVEER 598
           + LI A C         + L +  LM   PD  T   +   L + GR  EAA + +R
Sbjct: 244 QTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDR 300



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 64/139 (46%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           ++ +  L++    +G +E  L  + E   +    +  S NI++S   +TGK  +A++  +
Sbjct: 552 NITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQ 611

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
            +I  G  P+  TY  +I  L  +G +  A  +F+ L    I+  +  Y  L+       
Sbjct: 612 DMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEG 671

Query: 257 RFDEAKSLLNEMRDDGKFP 275
            F++A  LL +  D G  P
Sbjct: 672 MFNDACLLLYKGVDSGFIP 690



 Score = 45.8 bits (107), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 42/221 (19%), Positives = 87/221 (39%), Gaps = 2/221 (0%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL 143
           SAL ++  + +   F  N  T   L     K  R  E   ++  +S+      +V +  L
Sbjct: 395 SALELLNEMVAK-RFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCL 453

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
           +      G++E  L  + E   +       ++N +++   K  K  EA+  +  +  EG 
Sbjct: 454 ICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGV 513

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
           I N+ TY  ++   +    +  A ++   +        +  Y  L++        ++   
Sbjct: 514 IANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLG 573

Query: 264 LLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREML 303
           L  EM   G FP   +  + +  +   G +  A +FL++M+
Sbjct: 574 LFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMI 614



 Score = 43.9 bits (102), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 80/205 (39%), Gaps = 6/205 (2%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           V H L  A     A  +++ +     FS +  T   L   L +  +  E + L+  I + 
Sbjct: 281 VIHGLCRAGRIHEAAKLLDRMLLR-GFSTDALTYGYLMHGLCRMGQVDEARALLNKIPNP 339

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLST-WNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                +V +  L+  Y  SG  E      +N            ++NI++    K G    
Sbjct: 340 N----TVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVS 395

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A+E   +++ +   PN  TYT++I      G+L+ A E+ +++    +   +  Y  L+ 
Sbjct: 396 ALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLIC 455

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP 275
                   +EA  L  EM   G  P
Sbjct: 456 ALCKDGNIEEALQLFGEMSGKGCKP 480



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 40/206 (19%), Positives = 77/206 (37%), Gaps = 7/206 (3%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           + PF +   L    +  +++ + +   +   +SH     + L   L        ++ L+ 
Sbjct: 64  ISPFQLCKLLELPLDIPTSMELFQRAGAQKGYSHTFDACYLLIDKLGAVGDFKVIEKLLK 123

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSG----DLELVLSTWNEYRQRAKLLSTESYNIVMSVY 182
            +     L     F+ +M+ Y  +G       L+L  W  Y         +SYN+V+ + 
Sbjct: 124 QMKDEGLLFKESLFILIMKHYGKAGLPGQATRLLLDMWGVYSCDPTF---KSYNVVLDIL 180

Query: 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
                   A   F  ++  G  P   T+ V+++ L  + ++DSA  +   +        S
Sbjct: 181 VDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNS 240

Query: 243 KQYLILVEGFVGVERFDEAKSLLNEM 268
             Y  L+       R  EA  LL +M
Sbjct: 241 VIYQTLIHALCENNRVSEALQLLEDM 266


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 107/242 (44%), Gaps = 12/242 (4%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHA--------LRSAPNADSALSIMEALK 93
           L+D      R   + ++ +++  + + P +VT+         ++    A S  + M  L 
Sbjct: 183 LVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLG 242

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
            +P+      +   L     K +   E   L+ ++   + +   V + +L+     SG +
Sbjct: 243 VSPDIQ----SYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKI 298

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
              L   +E   R +  +  +Y+ ++    K  +   A+    Q+ ++G  PN  TYT++
Sbjct: 299 SYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTIL 358

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           I+ L   GKL+ A +VF  L +         Y ++++GF     FDEA +LL++M D+G 
Sbjct: 359 IKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGC 418

Query: 274 FP 275
            P
Sbjct: 419 IP 420



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 91/221 (41%), Gaps = 25/221 (11%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           DVY    ++    + G V+    ++A +   G++    T   ++D Y + K+ + A   F
Sbjct: 176 DVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIF 235

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
           +    L G     +    YS L+    K K   +A+ +L+EM    I+P+V T+S L+  
Sbjct: 236 NTMAQL-GVSPDIQS---YSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDG 291

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPD 572
               G      KL   +   G  P+   +  ++ A CK             + N  + P+
Sbjct: 292 LCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPN 351

Query: 573 AATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGH 613
             T  +L K L + G+ ++A  V E          L ++GH
Sbjct: 352 MYTYTILIKGLCQSGKLEDARKVFE---------DLLVKGH 383



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 1/134 (0%)

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
           +   GK  +AV+ F ++I E   P+  T+T++++     G++  A  V + + +  IK  
Sbjct: 152 HCIVGKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPG 211

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLR 300
              Y  L++G+  V++ ++AKS+ N M   G  P  ++  + +    ++  +  A E L+
Sbjct: 212 VVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLK 271

Query: 301 EMLPDKRIKNVRYY 314
           EM   + I NV  Y
Sbjct: 272 EMHHKQIIPNVVTY 285



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 14/135 (10%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ YSS+L  L K  +  +AI +L +M   GI P++ T++ L+      G  +  +K+F 
Sbjct: 317 IVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFE 376

Query: 540 MVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEG 587
            +   G   + Y + V+IQ +C              + ++  +P+A T E++  SL+K+ 
Sbjct: 377 DLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFKKD 436

Query: 588 RRKEAAAVEERCEKI 602
             + A  +   CE I
Sbjct: 437 ENEMAEKL--LCEMI 449



 Score = 46.6 bits (109), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 82/407 (20%), Positives = 167/407 (41%), Gaps = 53/407 (13%)

Query: 155 LVLSTWNEYRQ-RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           L LS   E+R  +  L++    NI+++ + + G    A     +++  G  PN+ T   +
Sbjct: 82  LYLSQKMEFRGIKPNLVNC---NILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTL 138

Query: 214 IEHLV----------NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
           I+ L            +GKL  A+++F+ + L  I      + ILV+GF    R  EAK+
Sbjct: 139 IKGLCLNGKIHDKHCIVGKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKN 198

Query: 264 LLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDED 323
           +L  M   G  PG    V    + +  F+      ++++   K I N       S D + 
Sbjct: 199 VLAMMMIQGIKPG---VVTYNSLMDGYFL------VKQVNKAKSIFNTMAQLGVSPDIQS 249

Query: 324 ENDDNNSGVRIAY---GVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVL 380
            +   N   +I      ++L   +  K +   +  +S  +  L    K  +  +LV ++ 
Sbjct: 250 YSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMH 309

Query: 381 RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP 440
              + P                  ++     +L  L ++  V+    L+ ++++ G++  
Sbjct: 310 DRGQPP------------------NIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPN 351

Query: 441 FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD-FD- 498
             T  ++I     S K + A K F D       + K   + +Y+  +     C +  FD 
Sbjct: 352 MYTYTILIKGLCQSGKLEDARKVFED------LLVKGHNLNVYTYTVMIQGFCDKGLFDE 405

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS-MVRQN 544
           A+ +L +M  +G +P+ +T+  ++     + + ++ +KL   M+  N
Sbjct: 406 ALTLLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAEKLLCEMIETN 452



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 1/105 (0%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y I++    ++GK  +A + F  ++ +G   N  TYTVMI+   + G  D AL + S +
Sbjct: 354 TYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKM 413

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA 278
                   +K Y I++      +  + A+ LL EM +   F GR 
Sbjct: 414 EDNGCIPNAKTYEIIILSLFKKDENEMAEKLLCEMIET-NFDGRV 457


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 88/486 (18%), Positives = 199/486 (40%), Gaps = 35/486 (7%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
             +HN  TL+ +     +  +     +++G +    +   +  F  L++     G +   
Sbjct: 118 GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEA 177

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           +   +   +        +YN +++   ++G    A++  R++ +     +  TY+ +I+ 
Sbjct: 178 VVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDS 237

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
           L   G +D+A+ +F  +    IK +   Y  LV G     ++++   LL +M      P 
Sbjct: 238 LCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPN 297

Query: 277 R-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIA 335
                V L+   + G +Q ANE  +EM+      N+  Y    D    +N  + +   + 
Sbjct: 298 VITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLD 357

Query: 336 YGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCW 395
             V+              ++ SP++V+  +  K     + V   ++ F++          
Sbjct: 358 LMVR--------------NKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNIS-------- 395

Query: 396 VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455
              + G   +      ++    + G ++L + L  ++ S G+     T  +++D    + 
Sbjct: 396 ---KRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNG 452

Query: 456 KADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
           K + AL+ F D +      SK  L +++Y++++  + K  +  DA N+   +   G+ P+
Sbjct: 453 KLEKALEIFEDLQK-----SKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPN 507

Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAA 574
           V T++ ++     +G       L   + ++G  P+   +  LI+A   +L + +L   A 
Sbjct: 508 VMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRA---HLRDGDLTASAK 564

Query: 575 TKELLK 580
             E +K
Sbjct: 565 LIEEMK 570



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/225 (20%), Positives = 98/225 (43%), Gaps = 2/225 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D+A+S+ + +++      +  T ++L   L K+ + ++   L+ D+ S + +   + F  
Sbjct: 245 DAAISLFKEMET-KGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNV 303

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  +   G L+     + E   R    +  +YN +M  Y    +  EA      ++   
Sbjct: 304 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  T+T +I+    + ++D  ++VF  +    +   +  Y ILV+GF    +   A+
Sbjct: 364 CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAE 423

Query: 263 SLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDK 306
            L  EM   G  P      + L+ + + G ++ A E   ++   K
Sbjct: 424 ELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 468



 Score = 46.6 bits (109), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 81/197 (41%), Gaps = 9/197 (4%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           +V     +L +  + G ++  + L  ++ + G+     T   ++D Y +  +   A    
Sbjct: 297 NVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML 356

Query: 465 H-DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
               R  C P      ++ ++SL++     KR  D + V   +   G+V +  T+S L+ 
Sbjct: 357 DLMVRNKCSPD-----IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQ 411

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSL 583
            F   G  K+ ++LF  +  +GV PD   + +L+   C    N  L       E L+KS 
Sbjct: 412 GFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLC---DNGKLEKALEIFEDLQKSK 468

Query: 584 WKEGRRKEAAAVEERCE 600
              G       +E  C+
Sbjct: 469 MDLGIVMYTTIIEGMCK 485



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 13/117 (11%)

Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
           K+D DAI + +EMI S  +P +  FS      A      +V      +  NG+  + Y  
Sbjct: 68  KKD-DAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTL 126

Query: 554 KVLIQAYCKYLSNS------------NLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
            ++I  +C+                    PD  T   L K L+ EG+  EA  + +R
Sbjct: 127 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDR 183


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 97/449 (21%), Positives = 182/449 (40%), Gaps = 33/449 (7%)

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           ++F NV +N +        +  L+LV S  +   +R       ++NI++    K  +   
Sbjct: 168 TRFYNVLLNVL------VDANKLKLVESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRP 221

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A+    ++   G  P+  T+T +++  +  G LD AL +   +       T     +L+ 
Sbjct: 222 AILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLIN 281

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREML-----P 304
           GF    R D+A S + E   +G  P +      +  + ++G  + A E +  ML     P
Sbjct: 282 GFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDP 341

Query: 305 DKRIKN--------VRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEW 356
           D    N        +   E+     +     + S   + Y   +          N +DE 
Sbjct: 342 DIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCK----ENRVDEA 397

Query: 357 SPEVVSLLADAKF---VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKML 413
           + E+  LL        V T   + + L    + ++A   F  +  + G   D +    ++
Sbjct: 398 T-EIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGK-GCRPDEFTYNMLI 455

Query: 414 TILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGP 473
             L     +E    L+ ++  +G          +ID +  +K+ + A + F D+  L G 
Sbjct: 456 DSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIF-DEMELQG- 513

Query: 474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
           +S+  +   Y++L+  L K KR  DA  ++++MI  G+ PD  T++ L+ HF   GD K 
Sbjct: 514 VSRDSVT--YNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKK 571

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
              +   +  +G  PD   +  LI   CK
Sbjct: 572 AADIVQTMTSSGCNPDIVTYATLISGLCK 600



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 76/169 (44%)

Query: 100 HNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLST 159
           H+ ST + L   L K+ +      ++ ++ S         F  +MQ Y   G+L+  L  
Sbjct: 201 HDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRI 260

Query: 160 WNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219
             +  +     +  + N++++ + K G+  +A+   ++ + EG  P+  TY  ++  L  
Sbjct: 261 KEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCK 320

Query: 220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           +G    A+EV  A+ L  +      Y  L+ G   +   +EA  +L++M
Sbjct: 321 IGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQM 369



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 96/216 (44%), Gaps = 6/216 (2%)

Query: 67  LDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHEL 121
           LDP I T+      L      + A+ I++ + S  + S N  T +A+ + L K  R  E 
Sbjct: 339 LDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSR-DCSPNAVTYNAIISSLCKENRVDEA 397

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
             +   ++S   L     F +L+Q    S + +  +  + E + +       +YN+++  
Sbjct: 398 TEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDS 457

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
              + K  EA+   +++   G   N   Y  +I+      +++ A E+F  + L  + R 
Sbjct: 458 LCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRD 517

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR 277
           S  Y  L++G    +R ++A  L+++M  +G  P +
Sbjct: 518 SVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDK 553



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 90/468 (19%), Positives = 176/468 (37%), Gaps = 42/468 (8%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAK-SQRNHELKT----LIGDISSSKFLNVS 137
           D ALS ++   S   F  +Q T + L   L K     H ++     L+G +    +    
Sbjct: 290 DQALSFIQEAVSE-GFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIY---- 344

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
             + +L+      G++E  +   ++   R    +  +YN ++S   K  +  EA E  R 
Sbjct: 345 -TYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARL 403

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +  +G +P+  T+  +I+ L       SA+++F  +     +     Y +L++      +
Sbjct: 404 LTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRK 463

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDG 317
            +EA +LL EM    +  G A  V +      GF +           +KRI+     E+ 
Sbjct: 464 LEEALNLLKEM----ELNGCARNVVIYNTLIDGFCK-----------NKRIEEA---EEI 505

Query: 318 SDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLV- 376
            D+ E +    +S   + Y   +      K + +        ++  L   KF + + L  
Sbjct: 506 FDEMELQGVSRDS---VTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTH 562

Query: 377 -CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
            CK     K+ +             G   D+     +++ L + G V++  RL+  ++  
Sbjct: 563 FCKTGDIKKAADIVQ-----TMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMK 617

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR 495
           GM L       +I       +   A++ F +      P       ++Y  L         
Sbjct: 618 GMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGLCNGGGPIG- 676

Query: 496 DFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
             +A++   EMI  G +P+  +F  L         +  + KL  M+ +
Sbjct: 677 --EAVDFTVEMIERGNIPEFSSFVMLAEGLCTLSMDDTLVKLVDMIME 722



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 57/270 (21%), Positives = 100/270 (37%), Gaps = 46/270 (17%)

Query: 371 WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIA 430
           +T + + + LR       A   F W + QP +       E++L  L + G  E + R++ 
Sbjct: 62  FTPKQLIETLRRQTDEVAALRVFNWASKQPNFVPSSSVYEEILRKLGKAGSFEYMRRVLE 121

Query: 431 KLRSDGMRLPFSTIRLIIDFYGISKKAD---AALKAFHDDRTLCGPISKFKLMLL----- 482
           +++  G         + ++ YG  +  D     +K   D+  +  P ++F  +LL     
Sbjct: 122 EMKLSGCEFDRGIFLIFVESYGKFELYDEVVGIVKVMEDEYRI-KPDTRFYNVLLNVLVD 180

Query: 483 -------------------------YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
                                    ++ L++ L K  +   AI ++EEM   G+ PD  T
Sbjct: 181 ANKLKLVESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETT 240

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------LS------ 565
           F+ +M  +   G+     ++   + + G         VLI  +CK       LS      
Sbjct: 241 FTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAV 300

Query: 566 NSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
           +    PD  T   L   L K G  K A  V
Sbjct: 301 SEGFRPDQFTYNTLVNGLCKIGHAKHAMEV 330



 Score = 46.6 bits (109), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 79/204 (38%), Gaps = 16/204 (7%)

Query: 404 HDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKA 463
           HDV     ++  L +   V     ++ ++ S G+    +T   I+  Y      D AL+ 
Sbjct: 201 HDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRI 260

Query: 464 FHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
                    P +   +    + L+    K  R   A++ ++E +  G  PD  T++ L+ 
Sbjct: 261 KEQMVEYGCPCTDVTV----NVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVN 316

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMP 571
                G  K   ++   +   G++PD Y +  LI   CK             + + +  P
Sbjct: 317 GLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSP 376

Query: 572 DAATKELLKKSLWKEGRRKEAAAV 595
           +A T   +  SL KE R  EA  +
Sbjct: 377 NAVTYNAIISSLCKENRVDEATEI 400



 Score = 45.8 bits (107), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 97/227 (42%), Gaps = 41/227 (18%)

Query: 88  IMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWY 147
           IME L+ +  F++N     +L T   K+    +   ++  ++SS      V +  L+   
Sbjct: 545 IMEGLRPD-KFTYN-----SLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGL 598

Query: 148 STSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNS 207
             +G +++        + +  +L+  +YN V+    K  +  EA+  FR+++D+   P++
Sbjct: 599 CKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDA 658

Query: 208 RTYTVMIEHLVNLG-----KLDSALEV--------FSALPL------------------- 235
            TY ++   L N G      +D  +E+        FS+  +                   
Sbjct: 659 ITYKIVYRGLCNGGGPIGEAVDFTVEMIERGNIPEFSSFVMLAEGLCTLSMDDTLVKLVD 718

Query: 236 --MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR 280
             M   + S++ +  + GF+ + +F +A S L  + DD  +P R+ R
Sbjct: 719 MIMEKAKFSEREISTIRGFLKIRKFQDALSTLGGILDD-MYPRRSYR 764



 Score = 45.8 bits (107), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 45/236 (19%), Positives = 94/236 (39%), Gaps = 6/236 (2%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVT-----HALRSAPNADSALSIMEALKSNP 96
           +I S+    R + +  ++ LL  + + P + T       L  + N  SA+ + E +K   
Sbjct: 384 IISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGK- 442

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
               ++ T + L   L  S++  E   L+ ++  +      V +  L+  +  +  +E  
Sbjct: 443 GCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEA 502

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
              ++E   +     + +YN ++    K+ +  +A +   Q+I EG  P+  TY  ++ H
Sbjct: 503 EEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTH 562

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
               G +  A ++   +           Y  L+ G     R   A  LL  ++  G
Sbjct: 563 FCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKG 618



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 102/516 (19%), Positives = 186/516 (36%), Gaps = 86/516 (16%)

Query: 133 FLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV 192
           F+  S  +  +++    +G  E +     E +          + I +  Y K     E V
Sbjct: 93  FVPSSSVYEEILRKLGKAGSFEYMRRVLEEMKLSGCEFDRGIFLIFVESYGKFELYDEVV 152

Query: 193 ETFRQVIDEGAI-PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
              + + DE  I P++R Y V++  LV+  KL       S++   RI+     + IL++ 
Sbjct: 153 GIVKVMEDEYRIKPDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRIRHDVSTFNILIKA 212

Query: 252 FVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKN- 310
                +   A  ++ EM   G  P       +  MQ  G+I+G N  L   L   RIK  
Sbjct: 213 LCKAHQVRPAILMMEEMPSYGLSPDETTFTTI--MQ--GYIEGGN--LDGAL---RIKEQ 263

Query: 311 -VRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF 369
            V Y    +D              +   V +  +     +   L      V       +F
Sbjct: 264 MVEYGCPCTD--------------VTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQF 309

Query: 370 VWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVE---- 423
            + T +  +CK+  H K               P    D+Y    +++ L + G +E    
Sbjct: 310 TYNTLVNGLCKI-GHAKHAMEVVDAMLLGGLDP----DIYTYNSLISGLCKLGEIEEAVK 364

Query: 424 LVDRLIAK-------------------------------LRSDGMRLPFSTIRLIIDFYG 452
           ++D+++++                               L S G+     T   +I    
Sbjct: 365 ILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLC 424

Query: 453 ISKKADAALKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
           +S    +A+  F + +   C P  +F     Y+ L+ +L   ++  +A+N+L+EM  +G 
Sbjct: 425 LSSNHKSAMDLFEEMKGKGCRP-DEFT----YNMLIDSLCSSRKLEEALNLLKEMELNGC 479

Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--------- 562
             +V  ++ L+  F      +  +++F  +   GV  D+  +  LI   CK         
Sbjct: 480 ARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQ 539

Query: 563 ---YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
               +    L PD  T   L     K G  K+AA +
Sbjct: 540 LMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADI 575


>gi|255557937|ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540761|gb|EEF42321.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1429

 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 123/271 (45%), Gaps = 16/271 (5%)

Query: 47  RLAVRSNSSNSLSSLLND---RLLDPFIVTH-----ALRSAPNADSALSI---MEALKSN 95
           RL   + + N    LLN+     L P I+T+     A     N + A+ +   MEA    
Sbjct: 255 RLKAGAMTPNVAIELLNEVRRSGLRPDIITYNTLISACSRESNLEEAVKVFDDMEAHYCQ 314

Query: 96  PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLEL 155
           P+      T +A+ +V  +   + + + L  ++ S  +   +V + +L+  ++  G+++ 
Sbjct: 315 PDLW----TYNAMISVYGRCGFSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDK 370

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
           V    NE  Q   +    +YN ++ +Y K G++  A++ +R +   G  P++ TYTV+I+
Sbjct: 371 VKEICNEMVQMGFIRDEMTYNTIIHMYGKQGQHGLALQLYRDMKLSGRTPDAITYTVLID 430

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            L    K+  A  V S +  + +K T + Y  L+ G+    +  EA+   + MR  G  P
Sbjct: 431 SLGKANKMVEAANVMSEMLNIGVKPTLRTYSALICGYARAGQRLEAEETFDCMRRSGIRP 490

Query: 276 GR-AMRVALERMQEMGFIQGANEFLREMLPD 305
            + A  V L+          A    REM+ D
Sbjct: 491 DQLAYSVMLDVFLRFDEATKAMMLYREMVRD 521



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 12/179 (6%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           GY  D      +L   AR G+V+ V  +  ++   G      T   II  YG   +   A
Sbjct: 347 GYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIRDEMTYNTIIHMYGKQGQHGLA 406

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           L+ + D + L G        + Y+ L+ +L K  +  +A NV+ EM+  G+ P ++T+S 
Sbjct: 407 LQLYRDMK-LSGRTPD---AITYTVLIDSLGKANKMVEAANVMSEMLNIGVKPTLRTYSA 462

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELL 579
           L+  +A  G     ++ F  +R++G+ PD   + V++  + ++        D ATK ++
Sbjct: 463 LICGYARAGQRLEAEETFDCMRRSGIRPDQLAYSVMLDVFLRF--------DEATKAMM 513



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 81/194 (41%), Gaps = 18/194 (9%)

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSL 486
           L+ ++R  G+R    T   +I         + A+K F D +   C P      +  Y+++
Sbjct: 269 LLNEVRRSGLRPDIITYNTLISACSRESNLEEAVKVFDDMEAHYCQPD-----LWTYNAM 323

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           +    +C     A  + +E+   G  PD  T++ L+Y FA +G+   V+++ + + Q G 
Sbjct: 324 ISVYGRCGFSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGF 383

Query: 547 EPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAA 594
             D   +  +I  Y K             +  S   PDA T  +L  SL K  +  EAA 
Sbjct: 384 IRDEMTYNTIIHMYGKQGQHGLALQLYRDMKLSGRTPDAITYTVLIDSLGKANKMVEAAN 443

Query: 595 VEERCEKINDVPSL 608
           V      I   P+L
Sbjct: 444 VMSEMLNIGVKPTL 457



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 77/185 (41%), Gaps = 6/185 (3%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T ++L    A+     ++K +  ++    F+   + +  ++  Y   G   L L  + + 
Sbjct: 354 TYNSLLYAFAREGNVDKVKEICNEMVQMGFIRDEMTYNTIIHMYGKQGQHGLALQLYRDM 413

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
           +   +     +Y +++    K  K  EA     ++++ G  P  RTY+ +I      G+ 
Sbjct: 414 KLSGRTPDAITYTVLIDSLGKANKMVEAANVMSEMLNIGVKPTLRTYSALICGYARAGQR 473

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS---LLNEMRDDGKFPGRAMR 280
             A E F  +    I+     Y ++++ F+   RFDEA     L  EM  DG  P   + 
Sbjct: 474 LEAEETFDCMRRSGIRPDQLAYSVMLDVFL---RFDEATKAMMLYREMVRDGITPDPTVY 530

Query: 281 VALER 285
            A+ R
Sbjct: 531 GAMLR 535



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 80/163 (49%), Gaps = 6/163 (3%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID-FYGISKKADA 459
           G +  V ++  +L  L   G +E +  +  +++  G ++  S+I LI+D F  +S  A+A
Sbjct: 800 GPSPTVDSINGLLQALIVDGRLEELYVVTQEIQDMGFQISKSSILLILDAFARVSNIAEA 859

Query: 460 ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
             K  +      G    F  M LY  ++  L K KR  D   ++ EM  +G  PD+  ++
Sbjct: 860 --KKIYQGMKAAG---YFPTMHLYRIMIGLLCKGKRVRDVEAMVTEMEEAGFRPDLSIWN 914

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            ++  +    D +   +++  ++++G++PD   +  LI  YC+
Sbjct: 915 SMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMYCR 957



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 77/385 (20%), Positives = 143/385 (37%), Gaps = 61/385 (15%)

Query: 164  RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
            RQR   +  + +N ++  YA +G   +A   F  ++ +G  P   +   +++ L+  G+L
Sbjct: 762  RQRCTNVDRKVWNALIQAYAASGCYEQARAVFNTMMRDGPSPTVDSINGLLQALIVDGRL 821

Query: 224  DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG------- 276
            +    V   +  M  + +    L++++ F  V    EAK +   M+  G FP        
Sbjct: 822  EELYVVTQEIQDMGFQISKSSILLILDAFARVSNIAEAKKIYQGMKAAGYFPTMHLYRIM 881

Query: 277  ----------RAMRVALERMQEMGF-------------IQGANEFLREMLPDKRIKNVRY 313
                      R +   +  M+E GF               G ++F + +   +RIK    
Sbjct: 882  IGLLCKGKRVRDVEAMVTEMEEAGFRPDLSIWNSMLRLYTGIDDFRKTVQIYQRIK---- 937

Query: 314  YEDGSDDDEDENDD----NNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF 369
             EDG   DED  +          R   G  L   +    L   LD +   + +       
Sbjct: 938  -EDGLQPDEDTYNTLIVMYCRDHRPEEGCSLMHEMRRIGLEPKLDTYKSLIAAFGKQQLV 996

Query: 370  VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
            V    L  ++L      + +++                    M+ I    G+    ++L+
Sbjct: 997  VDAEELFEELLSKGSKLDRSFYHI------------------MMKIYRNSGNHSKAEKLL 1038

Query: 430  AKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRT 489
            + ++  G+    +T+ L++  YG S +   A K   + + +   +S     L YSS++  
Sbjct: 1039 SMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLTNLKEMGLSLST----LPYSSVIDA 1094

Query: 490  LTKCKRDFDAINVLEEMIFSGIVPD 514
              K K     I  L EM   G+ PD
Sbjct: 1095 YLKNKDYSVGIQKLVEMKKEGLEPD 1119



 Score = 39.7 bits (91), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 72/180 (40%), Gaps = 9/180 (5%)

Query: 399  QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
            + G+  D+     ML +           ++  +++ DG++    T   +I  Y    + +
Sbjct: 903  EAGFRPDLSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMYCRDHRPE 962

Query: 459  AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
                  H+ R + G   K      Y SL+    K +   DA  + EE++  G   D   +
Sbjct: 963  EGCSLMHEMRRI-GLEPKLDT---YKSLIAAFGKQQLVVDAEELFEELLSKGSKLDRSFY 1018

Query: 519  SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKEL 578
              +M  +   G+    +KL SM++  GVEP      +L+ +Y      S+  P  A K L
Sbjct: 1019 HIMMKIYRNSGNHSKAEKLLSMMKDAGVEPTIATMHLLMVSY-----GSSGQPQEAEKVL 1073


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 104/527 (19%), Positives = 190/527 (36%), Gaps = 74/527 (14%)

Query: 97  NFSHNQSTLH-ALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLEL 155
            F      LH A+   L K++R  E + + G +    F   ++ +  ++   + +G  + 
Sbjct: 219 GFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQE 278

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
            L   +    +A + +  +Y I+++   K G    A E FR +   G  PNS  YT +I 
Sbjct: 279 ALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIH 338

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                G++  A  +F  +     +     + ++++G      F++A     EM   G  P
Sbjct: 339 GFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKP 398

Query: 276 GRAMRVA-LERMQEMGFIQGANEFLREMLP--------------DKRIKNVRYYEDGSDD 320
                   ++ + ++G +  A   ++ M+               D   K  R  E     
Sbjct: 399 NVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLL 458

Query: 321 DEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVL 380
           DE +   ++  +++ Y   +K   D  ++ NTLD+                         
Sbjct: 459 DELDKCSSSPNLQL-YSSLVKGLCDGGSVENTLDDL------------------------ 493

Query: 381 RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP 440
             F+  + A          PG    +      +  L + G ++   R+  ++ S+G +  
Sbjct: 494 --FEQSKAAAENL-----DPGLCCSI------IVGLCKTGRLDEACRIFQRMVSEGCKPD 540

Query: 441 FSTIRLIIDFYGISK--KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD 498
            +T  ++I+    S+  + + A    HD       +      + Y+ L   L K      
Sbjct: 541 ATTYNILINGLCRSRENRVERAFALLHDLEM----VGYLPDAVTYTPLCIGLCKIGEVDR 596

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS-MVRQNGVEPDAYMFKVLI 557
           A+ +LEE    G   DV  ++ L      QG       LF  MVRQ G  PDA  +  +I
Sbjct: 597 AVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGA-PDAAAYCCII 655

Query: 558 QAY---------CKYLS---NSNLMPDAATKELLKKSLWKEGRRKEA 592
                       CK+          P  AT   L ++L   G   EA
Sbjct: 656 NGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEA 702



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 93/194 (47%), Gaps = 1/194 (0%)

Query: 75  ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFL 134
            L  A +A  AL +++ + +       + T   L   L K+      + L   +++S F 
Sbjct: 269 GLAKAGHAQEALKVLDNMLAKACVP-TEVTYGILVNSLCKAGTLERAEELFRVMAASGFR 327

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
             SV + +L+  ++ SG ++   S ++E  +        ++ +++    K+G   +A ++
Sbjct: 328 PNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKS 387

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
           F +++  G  PN  TYT +I+ L  +G++ +A  +   +        S  Y+ L++GF  
Sbjct: 388 FEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCK 447

Query: 255 VERFDEAKSLLNEM 268
           + R DEA  LL+E+
Sbjct: 448 LGRLDEAAQLLDEL 461



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 94/453 (20%), Positives = 174/453 (38%), Gaps = 70/453 (15%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN +M++        +      +++  G  PN+ ++ ++I       + D A+  F  +
Sbjct: 121 TYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIM 180

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF-PGRAMRVALERMQEMGFI 292
              R K     +LILV+        ++A  + +EM   G   P RA+  A+         
Sbjct: 181 KRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAM--------- 231

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALA-N 351
                 +R +L  KR+K  R                       +G   K    P A+A N
Sbjct: 232 ------VRTLLKAKRVKEARE---------------------VFGQMEKCGFPPDAIAYN 264

Query: 352 TLDEW------SPEVVSLLAD--AKFVWTTRLVCKVLRH----FKSPETAWHFFCWVAYQ 399
           T+ +       + E + +L +  AK    T +   +L +      + E A   F  V   
Sbjct: 265 TMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELF-RVMAA 323

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
            G+  +      ++   A+ G ++    L  ++   G R    T  ++ID    S   + 
Sbjct: 324 SGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQ 383

Query: 460 ALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
           A K+F +  R  C P      ++ Y+++++ L+K  R  +A  +++ MI  G  PD  T+
Sbjct: 384 AAKSFEEMMRGGCKPN-----VVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTY 438

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPD------ 572
             L+  F   G      +L   + +    P+  ++  L++  C   S  N + D      
Sbjct: 439 ICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSK 498

Query: 573 AATKEL-------LKKSLWKEGRRKEAAAVEER 598
           AA + L       +   L K GR  EA  + +R
Sbjct: 499 AAAENLDPGLCCSIIVGLCKTGRLDEACRIFQR 531



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 92/232 (39%), Gaps = 21/232 (9%)

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           V  VLR  K   TA  FF W   Q G+ HDV+    ++ +L    +      +  ++   
Sbjct: 89  VAAVLRSLKVTGTAISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKA 148

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGP-ISKFKLMLLYSSLLRTLTKC 493
           G+     +  ++I  +  +++AD A+  F    R  C P +  F +      L+  L K 
Sbjct: 149 GIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLI------LVDCLCKA 202

Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE-KIVQKLFSMVRQNGVEPDAYM 552
             D  A  V  EM+  G VP  +     M    L+    K  +++F  + + G  PDA  
Sbjct: 203 GMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIA 262

Query: 553 FKVLI---------QAYCKYLSN---SNLMPDAATKELLKKSLWKEGRRKEA 592
           +  +I         Q   K L N      +P   T  +L  SL K G  + A
Sbjct: 263 YNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERA 314



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 96/223 (43%), Gaps = 18/223 (8%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G+  D  A   M+  LA+ GH +   +++  + +        T  ++++    +   + A
Sbjct: 255 GFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERA 314

Query: 461 LKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
            + F   R +    S F+   ++Y+SL+    K  R  +A ++ +EM+ +G  PDV T +
Sbjct: 315 EELF---RVM--AASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHT 369

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSN----------- 568
            ++      G+ +   K F  + + G +P+   +  +IQ   K    +N           
Sbjct: 370 VMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAH 429

Query: 569 -LMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLAL 610
              PD+ T   L     K GR  EAA + +  +K +  P+L L
Sbjct: 430 GCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQL 472



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 69/172 (40%), Gaps = 4/172 (2%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           A+    +M A    PN     S +H  A    KS R  E  +L  ++  + +    +   
Sbjct: 314 AEELFRVMAASGFRPNSVIYTSLIHGFA----KSGRMKEACSLFDEMVEAGYRPDVITHT 369

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            ++     SG+ E    ++ E  +     +  +Y  ++   +K G+   A    + +I  
Sbjct: 370 VMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAH 429

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
           G  P+S TY  +++    LG+LD A ++   L         + Y  LV+G  
Sbjct: 430 GCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLC 481



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 83/218 (38%), Gaps = 6/218 (2%)

Query: 67  LDPFIVTH---ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT 123
           LDP +       L      D A  I + + S      + +T + L   L +S+ N   + 
Sbjct: 504 LDPGLCCSIIVGLCKTGRLDEACRIFQRMVSE-GCKPDATTYNILINGLCRSRENRVERA 562

Query: 124 --LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
             L+ D+    +L  +V +  L       G+++  +    E   R       +Y  + + 
Sbjct: 563 FALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTG 622

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
               G+   AV  F++++ +G  P++  Y  +I  L+   KL+ A + F  +     K T
Sbjct: 623 LCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPT 682

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM 279
              Y  LV+        DEA      M   G+  G  M
Sbjct: 683 VATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVM 720



 Score = 42.7 bits (99), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 13/137 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+  L   K       + EEM+ +GI P+  +F+ L+  FA           F +++
Sbjct: 122 YNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMK 181

Query: 543 QNGVEPDAYMFKVLIQAYCK-------------YLSNSNLMPDAATKELLKKSLWKEGRR 589
           +   +PD + F +L+   CK              ++   + PD A    + ++L K  R 
Sbjct: 182 RKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRV 241

Query: 590 KEAAAVEERCEKINDVP 606
           KEA  V  + EK    P
Sbjct: 242 KEAREVFGQMEKCGFPP 258


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 88/486 (18%), Positives = 197/486 (40%), Gaps = 35/486 (7%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
             +HN  TL+ +     +  +     +++G +    +   +  F  L+      G +   
Sbjct: 118 GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKA 177

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           +   +   +        +YN +++   ++G    A +  R++ +     +  TY+ +I+ 
Sbjct: 178 VVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDS 237

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
           L   G +D+A+ +F  +    IK +   Y  LV G     ++++   LL +M      P 
Sbjct: 238 LCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPN 297

Query: 277 R-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIA 335
                V L+   + G +Q ANE  +EM+      N+  Y    D    +N  + +   + 
Sbjct: 298 VITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLD 357

Query: 336 YGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCW 395
             V+              ++ SP++V+  +  K     + V   ++ F++          
Sbjct: 358 LMVR--------------NKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNIS-------- 395

Query: 396 VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455
              + G   +      ++    + G ++L + L  ++ S G+     T  +++D    + 
Sbjct: 396 ---KRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNG 452

Query: 456 KADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
           K + AL+ F D +      SK  L +++Y++++  + K  +  DA N+   +   G+ P+
Sbjct: 453 KLEKALEIFEDLQK-----SKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPN 507

Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAA 574
           V T++ ++     +G       L   + ++G  P+   +  LI+A   +L + +L   A 
Sbjct: 508 VMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRA---HLRDGDLTASAK 564

Query: 575 TKELLK 580
             E +K
Sbjct: 565 LIEEMK 570



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 85/193 (44%), Gaps = 1/193 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D+A+S+ + +++      +  T ++L   L K+ + ++   L+ D+ S + +   + F  
Sbjct: 245 DAAISLFKEMET-KGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNV 303

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  +   G L+     + E   R    +  +YN +M  Y    +  EA      ++   
Sbjct: 304 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  T+T +I+    + ++D  ++VF  +    +   +  Y ILV+GF    +   A+
Sbjct: 364 CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAE 423

Query: 263 SLLNEMRDDGKFP 275
            L  EM   G  P
Sbjct: 424 ELFQEMVSHGVLP 436



 Score = 46.6 bits (109), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 81/197 (41%), Gaps = 9/197 (4%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           +V     +L +  + G ++  + L  ++ + G+     T   ++D Y +  +   A    
Sbjct: 297 NVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML 356

Query: 465 H-DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
               R  C P      ++ ++SL++     KR  D + V   +   G+V +  T+S L+ 
Sbjct: 357 DLMVRNKCSPD-----IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQ 411

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSL 583
            F   G  K+ ++LF  +  +GV PD   + +L+   C    N  L       E L+KS 
Sbjct: 412 GFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLC---DNGKLEKALEIFEDLQKSK 468

Query: 584 WKEGRRKEAAAVEERCE 600
              G       +E  C+
Sbjct: 469 MDLGIVMYTTIIEGMCK 485


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 116/272 (42%), Gaps = 11/272 (4%)

Query: 41  QLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSH 100
           Q++DS R       S  L       +L P +V   +   P+ ++A  + +       F+H
Sbjct: 45  QVVDSKRAGEGIEKSLGLYG----DILVPDLVGKVIHRIPDPNTAWEVFQWAGKQSKFTH 100

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N+ T + L +V  K++R  +          + F    V++  LM  +  +GD++  L+ +
Sbjct: 101 NRFTCNNLLSVYVKARRVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALF 160

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI--PNSRTYTVMIEHLV 218
            E +  + +    S+NIV+      GK   A E F+   D   I  PN  +YT+MI+ L 
Sbjct: 161 GEMKD-SGIAVLRSHNIVLRGLCSGGKISMAWEVFK---DMSGIFSPNLISYTIMIDGLC 216

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA 278
              K+D A+ +F  +    I      Y  L++G     R  EA  L  E R  G  P   
Sbjct: 217 KSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVV 276

Query: 279 M-RVALERMQEMGFIQGANEFLREMLPDKRIK 309
                ++ + + G I+ A     +M+ +  +K
Sbjct: 277 TYNTMIDGLCKCGRIENALTLYDDMVREPHLK 308



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 13/126 (10%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF- 538
           M  YS+L+  L    R   A  + EEM+ +G  PDV T++ L+      G E    ++F 
Sbjct: 311 MFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFR 370

Query: 539 SMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKE 586
            M   N  +P+   + VLI  +CK             +   +L+PDA T   + + L KE
Sbjct: 371 KMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKE 430

Query: 587 GRRKEA 592
            R  EA
Sbjct: 431 SRIDEA 436



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/220 (19%), Positives = 95/220 (43%), Gaps = 3/220 (1%)

Query: 58  LSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR 117
           +S + +  L+   I+   L  +   D A+++ + +     +  +  T  AL   L K +R
Sbjct: 197 MSGIFSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYP-DVVTYGALIDGLGKQRR 255

Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE-SYN 176
             E   L  +  +       V +  ++      G +E  L+ +++  +   L     +Y+
Sbjct: 256 VKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYS 315

Query: 177 IVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM 236
            +++    + +  +A E + +++D G  P+  TY  +++ L   G  D A+E+F  + + 
Sbjct: 316 ALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVG 375

Query: 237 RIKRTSK-QYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            +   +   Y +L++ F  V+R  +A  L  EM      P
Sbjct: 376 NVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLP 415



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/250 (20%), Positives = 104/250 (41%), Gaps = 7/250 (2%)

Query: 40  AQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKS 94
             LID +    R   +  L      +   P +VT+      L      ++AL++ + +  
Sbjct: 244 GALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVR 303

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
            P+   +  T  AL   L  S R  +   L  ++  +      V +  L+     SG  +
Sbjct: 304 EPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCED 363

Query: 155 LVLSTWNEYR-QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
             +  + +         +  +Y +++  + K  +  +AV+  +++     +P++ T+T +
Sbjct: 364 KAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTV 423

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           I+ L    ++D A E+F ++     K  S  +  ++ G+  + R D+AK L + M D G 
Sbjct: 424 IQKLCKESRIDEAHELFESIG-KTCKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGC 482

Query: 274 FPGRAMRVAL 283
            P  A   AL
Sbjct: 483 APTLATYTAL 492



 Score = 42.4 bits (98), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 7/122 (5%)

Query: 443 TIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAIN 501
           T   +ID  G  ++   A   F + R   C P      ++ Y++++  L KC R  +A+ 
Sbjct: 242 TYGALIDGLGKQRRVKEAYDLFEEARAKGCHPT-----VVTYNTMIDGLCKCGRIENALT 296

Query: 502 VLEEMIFSG-IVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
           + ++M+    + PD+ T+S L+    L    +   +L+  +   G  PD   +  L+   
Sbjct: 297 LYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGL 356

Query: 561 CK 562
           CK
Sbjct: 357 CK 358


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 105/490 (21%), Positives = 192/490 (39%), Gaps = 50/490 (10%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL-MQWYSTSGDLELVLST 159
           N +T + L   L K++   E   L+ D+ S + +N      N+ +     +G L   L  
Sbjct: 79  NHTTYYNLIHPLCKARLLDEAMGLLLDMKS-RGMNPGTLLHNVVIGGLCRAGRLRHALGV 137

Query: 160 WNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219
           + +    A      +Y  ++   +K G+  +AV+  ++++    +P++ T TV+++ L  
Sbjct: 138 YRQMND-AHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCL 196

Query: 220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS-LLNEMRDDGKFPG-R 277
             ++D A E+   +    +   +  Y  LV+G    ER DEA + LL E+   G  P   
Sbjct: 197 GDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIV 256

Query: 278 AMRVALERMQEMGFIQGANEFLREM--LPDKRIKN--VRYYEDGSDDDEDEN------DD 327
                ++ + + G ++ A +   EM   P     N  +  Y    D DE         DD
Sbjct: 257 TYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDD 316

Query: 328 NNSGVRIAYGVQLKPWLDPKALANTLD--------EWSPEVVS-------LLADAKFVWT 372
           N +   I Y   +  +     L +  +        + SP+VV+       L  + +    
Sbjct: 317 NCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDA 376

Query: 373 TRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKL 432
             L+ ++ R    P T + + C V    GY               +   V   + L+A  
Sbjct: 377 LELLEEITRR-GCPPTIYTYNCVV---DGY--------------CKSNQVRKAEELVADF 418

Query: 433 RSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK 492
           RS G      T  +++     + + D AL+      +  GP      M  Y+ +L  L +
Sbjct: 419 RSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAM--YAIILDALCR 476

Query: 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYM 552
             R  DA+   EEMI  G VP   TF+ +++        +   +L   + + G  P    
Sbjct: 477 DGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGT 536

Query: 553 FKVLIQAYCK 562
              ++ AYC+
Sbjct: 537 CDAVVSAYCR 546



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 90/206 (43%), Gaps = 5/206 (2%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR-NHELKTLIGDIS 129
           +V  +L      D A  ++E +      + N  T  AL   L K +R +  +  L+G+++
Sbjct: 189 VVVQSLCLGDRVDDARELVEEMLHR-GMAANAITYSALVDGLCKCERLDEAVALLLGEVT 247

Query: 130 SSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF 189
              F    V +  ++     +G L   +  + E       ++   YN ++  Y + G   
Sbjct: 248 RRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAIT---YNSLIGGYCRAGDMD 304

Query: 190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV 249
           EA+    +++D+   P+  TYT ++     +G+LD A E+F  +   ++      +  LV
Sbjct: 305 EAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLV 364

Query: 250 EGFVGVERFDEAKSLLNEMRDDGKFP 275
           +G  G  R ++A  LL E+   G  P
Sbjct: 365 DGLCGEGRMEDALELLEEITRRGCPP 390



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/193 (19%), Positives = 88/193 (45%), Gaps = 3/193 (1%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A++++    +   F+ +  T   +   L K+ R  +   +  ++S +     ++ + +
Sbjct: 236 DEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAP---TAITYNS 292

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  Y  +GD++  +    +           +Y  +MS + K G+  +A E F+Q++   
Sbjct: 293 LIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANK 352

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  T+T +++ L   G+++ ALE+   +       T   Y  +V+G+    +  +A+
Sbjct: 353 LSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAE 412

Query: 263 SLLNEMRDDGKFP 275
            L+ + R  G  P
Sbjct: 413 ELVADFRSRGFVP 425



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 94/234 (40%), Gaps = 16/234 (6%)

Query: 79  APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV 138
           A + D A+ ++  +  + N + +  T   L +   K  R  +   L   + ++K     V
Sbjct: 300 AGDMDEAIRLLGKMVDD-NCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVV 358

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
            F +L+      G +E  L    E  +R    +  +YN V+  Y K+ +  +A E     
Sbjct: 359 TFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADF 418

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL-----PLMRIKRTSKQYLILVEGFV 253
              G +PN+ TY +++      G+ D AL+    L     P      +   Y I+++   
Sbjct: 419 RSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGP---CPTSVAMYAIILDALC 475

Query: 254 GVERFDEAKSLLNEMRDDGKFPGRA----MRVALERMQEMGFIQGANEFLREML 303
              R D+A     EM   G  P  A    +  AL +  +    Q A+E L EM+
Sbjct: 476 RDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQ---PQQAHELLEEMI 526



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 12/125 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y++L+    K  R  DA  + ++M+ + + PDV TF+ L+     +G  +   +L  
Sbjct: 322 VITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLE 381

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEG 587
            + + G  P  Y +  ++  YCK               +   +P+  T  +L     + G
Sbjct: 382 EITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAG 441

Query: 588 RRKEA 592
           R  +A
Sbjct: 442 RTDQA 446



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 15/141 (10%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ YS+++  L K  R  DA+++ EEM      P   T++ L+  +   GD     +L  
Sbjct: 255 IVTYSTVIDGLCKAGRLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGDMDEAIRLLG 311

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEG 587
            +  +   PD   +  L+ A+CK             +  + L PD  T   L   L  EG
Sbjct: 312 KMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEG 371

Query: 588 RRKEAAAVEERCEKINDVPSL 608
           R ++A  + E   +    P++
Sbjct: 372 RMEDALELLEEITRRGCPPTI 392



 Score = 45.8 bits (107), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 13/130 (10%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           L Y+ L+  L+K  R  DA+ VL+EM+ +  VPD  T + ++    L       ++L   
Sbjct: 150 LTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEE 209

Query: 541 VRQNGVEPDAYMFKVLIQAYCKY-------------LSNSNLMPDAATKELLKKSLWKEG 587
           +   G+  +A  +  L+   CK              ++     PD  T   +   L K G
Sbjct: 210 MLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAG 269

Query: 588 RRKEAAAVEE 597
           R ++A  + E
Sbjct: 270 RLRDAVDIFE 279


>gi|297724885|ref|NP_001174806.1| Os06g0499301 [Oryza sativa Japonica Group]
 gi|52076487|dbj|BAD45366.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|125597333|gb|EAZ37113.1| hypothetical protein OsJ_21452 [Oryza sativa Japonica Group]
 gi|255677074|dbj|BAH93534.1| Os06g0499301 [Oryza sativa Japonica Group]
          Length = 642

 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 88/194 (45%), Gaps = 2/194 (1%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D AL + EA+ ++P    N     A+   LA   +  E + L  ++  SK     + + +
Sbjct: 365 DCALKVWEAMVASP-VRPNVVLYSAMIGGLANFGKMTEAELLFREMIHSKCAPNIITYGS 423

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           ++Q Y   GD    LS W E      + +  SY+I+++     G+  +A+  ++ ++D G
Sbjct: 424 IIQGYFKIGDTSRALSVWEEMIGAGCVPNAVSYSILINGLCNVGRLKDAMMVWKHMLDRG 483

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVF-SALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
             P++  YT MI+ L   G +D  L +F   L           Y +L++G +  +    A
Sbjct: 484 CAPDTIAYTSMIKGLCVSGMVDGGLRLFYDMLASGHADPDVISYNVLLDGLLLAKDLPRA 543

Query: 262 KSLLNEMRDDGKFP 275
             LLN M D G  P
Sbjct: 544 MDLLNRMLDQGCDP 557



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/233 (18%), Positives = 96/233 (41%), Gaps = 2/233 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D AL I+  +    + + ++ T   + + LA + R  +   L+ ++ +   +     F  
Sbjct: 190 DVALRILHEIIPGWDLAPDKFTYSTVVSALADAGRVDDAVALVHEMVADGVVAAEA-FNP 248

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           +++    +GD++     +   + +  + +T +YN+++      G+   A+   R++  EG
Sbjct: 249 VLRAMLRAGDVKGAAKLFGFMQLKGCVPTTATYNVLVHGLLVCGRAGAAMGVMRRMEREG 308

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +P   TY  +++ LV  G++  A +V   +    +      Y  ++ GF      D A 
Sbjct: 309 VVPGVMTYGAVVDGLVRCGRVKDAWKVAEEMERNGLAWNEFVYSTVITGFCKSGEIDCAL 368

Query: 263 SLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
            +   M      P   +  A+   +   G +  A    REM+  K   N+  Y
Sbjct: 369 KVWEAMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIHSKCAPNIITY 421



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 13/131 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS+++  L    R  DA+ ++ EM+  G+V   + F+ ++      GD K   KLF  ++
Sbjct: 212 YSTVVSALADAGRVDDAVALVHEMVADGVV-AAEAFNPVLRAMLRAGDVKGAAKLFGFMQ 270

Query: 543 QNGVEPDAYMFKVLIQA--YC----------KYLSNSNLMPDAATKELLKKSLWKEGRRK 590
             G  P    + VL+     C          + +    ++P   T   +   L + GR K
Sbjct: 271 LKGCVPTTATYNVLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVDGLVRCGRVK 330

Query: 591 EAAAVEERCEK 601
           +A  V E  E+
Sbjct: 331 DAWKVAEEMER 341



 Score = 42.4 bits (98), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 39/80 (48%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+  L  C R   A+ V+  M   G+VP V T+  ++      G  K   K+   + 
Sbjct: 281 YNVLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEEME 340

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
           +NG+  + +++  +I  +CK
Sbjct: 341 RNGLAWNEFVYSTVITGFCK 360


>gi|302761606|ref|XP_002964225.1| hypothetical protein SELMODRAFT_81759 [Selaginella moellendorffii]
 gi|300167954|gb|EFJ34558.1| hypothetical protein SELMODRAFT_81759 [Selaginella moellendorffii]
          Length = 580

 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 105/549 (19%), Positives = 223/549 (40%), Gaps = 74/549 (13%)

Query: 93  KSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD 152
           ++  ++ H+    + +   LA ++R  ++ +++G++            ++L+  Y+    
Sbjct: 22  QNRSSYKHDSRIYNQVVRNLAAAKRLSDIDSVLGEMMDQGCSLEPEAALDLVVCYANGAM 81

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA---IPNSRT 209
           ++   + +NE R + +      YN++    AK  + F+ V  FR V D  A     +  T
Sbjct: 82  VDRAQAIFNELRHQGQEFPAHIYNVIFGALAKL-QRFQDV--FRMVEDLMAKNFTFSDST 138

Query: 210 YTVMIEHLVNLGKLDSALEVFSALPL--MRIKRTSKQYLILVEGFVGVERFDEAKSLLNE 267
              ++        +D A+     +    +++  ++ +Y  L+EG    +R DEA  L   
Sbjct: 139 ADALVRIFCKALAVDKAVRFLKWMSSKGLQVAMSTFEYNCLIEGLCKGDRIDEALRLYEL 198

Query: 268 MRDDGKFPGRAMRV--ALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDEN 325
           MR +   P         +E + ++G ++ A + L+ M                 ++ D  
Sbjct: 199 MRGN-NVPADIFTYNNMIECISKLGMVEQAEKVLKTM-----------------EESDCK 240

Query: 326 DDNNSGVRIAYG-VQLKPWLDPKALANTLDE--WSPEVV-------SLLADAKFVWTTRL 375
            D     R+  G  +L  + +   L   + E  ++P+ V        L   +KF     +
Sbjct: 241 PDKFIYTRVINGFCKLGNFKNAVVLLGRMKEAGYAPDAVVFDCIIGGLCKTSKFDEALVV 300

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS- 434
           +   +     P+   +F      +   T+ +Y+  +++  L + G VE   +L+  L + 
Sbjct: 301 LKVSIEAGCEPDEVTYFKLAQERKCPATNLLYS--RLMKCLCKTGKVEAACQLLEDLTNG 358

Query: 435 ----------DGMRLPFSTIRLIIDF---YGISKKADAALKAFHDDRTLCGPISKFKLML 481
                     DG +       ++ID     G++ +    +KA  +      P +     +
Sbjct: 359 SRESEQLLGGDGCKPDVVMYSIVIDALCAMGMTDEGFVVVKAMEERGV--KPDA-----V 411

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
           +Y+  L    +  R  DA  +LE M+ +G  PDV +++ L++     G E+   +LF ++
Sbjct: 412 VYTIFLYAFCRSARLDDACRLLEMMVEAGCYPDVISYNTLLFALCSAGQEEEACRLFQVM 471

Query: 542 RQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAAT-KELLKKSLWKEGR 588
            + G+EP+ + +  LI+A C             ++  S  +PD  T K L+      EG 
Sbjct: 472 VETGIEPNVFTYTQLIRALCSTKKLEGARHLFNFMKLSKCVPDMETYKALILGHYQNEGV 531

Query: 589 RKEAAAVEE 597
           R+    +E+
Sbjct: 532 REARQLLEQ 540



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 5/119 (4%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SYN ++      G+  EA   F+ +++ G  PN  TYT +I  L +  KL+ A  +F+ +
Sbjct: 447 SYNTLLFALCSAGQEEEACRLFQVMVETGIEPNVFTYTQLIRALCSTKKLEGARHLFNFM 506

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD--DGKFPGRAMRVALERMQEMG 290
            L +     + Y  L+ G    E   EA+ LL +  D    + PG+++   L  + E G
Sbjct: 507 KLSKCVPDMETYKALILGHYQNEGVREARQLLEQESDAFSRRNPGKSL---LSELHEAG 562


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 100/468 (21%), Positives = 178/468 (38%), Gaps = 71/468 (15%)

Query: 166 RAKLLSTESYNIVMSVYAKTGKNFEAVETFR-QVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
           R+   S   YNIV+    + G+   A+E FR ++  +G  P   TY  +I  L    +L 
Sbjct: 39  RSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELG 98

Query: 225 SALEVFSALPLMRIKRTSK----QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM- 279
           + +E+F  L    +KR        Y  L++        +EA+ L   M   G  P     
Sbjct: 99  AGMELFEEL----VKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTY 154

Query: 280 RVALERMQEMGFIQGANEFLR-------EMLPDKRIKNVRYYEDGSDDDEDENDDNNSGV 332
            V +  + ++G I  A E ++       ++LP+  I     + DG               
Sbjct: 155 SVLINGLCKVGRIDEARELIQEMTRKSCDVLPN--IITYNSFLDGLCKQS---------- 202

Query: 333 RIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHF 392
             A   +L   L   +L       SP+ V+      F      +CK  +  ++       
Sbjct: 203 MTAEACELMRSLRDGSL-----RVSPDTVT------FSTLIDGLCKCGQTDEACNDDM-- 249

Query: 393 FCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYG 452
                   GY  +V     ++  L +   +E    +I  +   G+     T  +++D + 
Sbjct: 250 -----IAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFC 304

Query: 453 ISKKADAALKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
            + + D AL+  H   +  C P      ++ ++S++  L K  R  +A  +  ++    +
Sbjct: 305 KASRVDEALELLHGMASRGCTPN-----VVTFNSIIDGLCKSDRSGEAFQIALQVYNRML 359

Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--------- 562
           VPD  TF+ L+      G+ +    LF  +    ++PD   F  LI   CK         
Sbjct: 360 VPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARD 419

Query: 563 ---YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
               + N  + P+  T  +L   L K GR      +EE CE + ++ S
Sbjct: 420 ILDLMGNLGVPPNVVTYNVLVHGLCKSGR------IEEPCEFLEEMVS 461



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 100/521 (19%), Positives = 183/521 (35%), Gaps = 74/521 (14%)

Query: 108 LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA 167
           L ++    +    L+   G+++        V +  ++     S +L   +  + E  +R 
Sbjct: 52  LQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVKRG 111

Query: 168 KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227
                 +YN ++    K G   EA      +   G +PN  TY+V+I  L  +G++D A 
Sbjct: 112 HHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEAR 171

Query: 228 EVFSALPLMRIKRTSK--QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER 285
           E+   +             Y   ++G        EA  L+  +RD       ++RV+ + 
Sbjct: 172 ELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDG------SLRVSPDT 225

Query: 286 MQEMGFIQGANEFLR-------EMLPDKRIKNVRYY-------------EDGSDDDEDEN 325
           +     I G  +  +       +M+    + NV  Y             E      E   
Sbjct: 226 VTFSTLIDGLCKCGQTDEACNDDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMV 285

Query: 326 DDNNSGVRIAYGVQLKPWLDPKALANTLD--------EWSPEVVSLLADAKFVWTTRLVC 377
           D   +   I Y V +  +     +   L+          +P VV+      F      +C
Sbjct: 286 DKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVT------FNSIIDGLC 339

Query: 378 KVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM 437
           K  R  ++ + A        Y      D      ++    + G+ E    L  ++ +  M
Sbjct: 340 KSDRSGEAFQIALQV-----YNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNM 394

Query: 438 RLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDF 497
           +    T   +ID  G+ K     ++A  D   L G +     ++ Y+ L+  L K  R  
Sbjct: 395 QPDVMTFGALID--GLCKAGQ--VEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIE 450

Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           +    LEEM+ SG VP+  T+  L+Y            +L S ++  G +PD   + +L+
Sbjct: 451 EPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILV 510

Query: 558 QAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
                                    LWK G+ ++A  V E 
Sbjct: 511 DG-----------------------LWKSGKTEQAITVLEE 528



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 6/138 (4%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN+++    K+G+  E  E   +++  G +P S TY  ++  L    + D AL++ S L
Sbjct: 435 TYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKL 494

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
                   +  Y ILV+G     + ++A ++L EM   G  P           +   G +
Sbjct: 495 KSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNL 554

Query: 293 QGANEFLR-----EMLPD 305
            G  E LR      MLPD
Sbjct: 555 AGTMELLRVVLAKGMLPD 572



 Score = 46.2 bits (108), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 49/243 (20%), Positives = 100/243 (41%), Gaps = 14/243 (5%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNP 96
           L++ +  A +   ++++   + D+ + P ++T+     A   A   D AL ++  + S  
Sbjct: 264 LVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASR- 322

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
             + N  T +++   L KS R+ E   +   + +   +   V F  L+     +G+ E  
Sbjct: 323 GCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQA 382

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE----GAIPNSRTYTV 212
            + + E   +       ++  ++    K G+    VE  R ++D     G  PN  TY V
Sbjct: 383 SALFEEMVAKNMQPDVMTFGALIDGLCKAGQ----VEAARDILDLMGNLGVPPNVVTYNV 438

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           ++  L   G+++   E    +        S  Y  LV       R D+A  L+++++  G
Sbjct: 439 LVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFG 498

Query: 273 KFP 275
             P
Sbjct: 499 WDP 501


>gi|293332227|ref|NP_001169164.1| uncharacterized protein LOC100383014 [Zea mays]
 gi|223975267|gb|ACN31821.1| unknown [Zea mays]
          Length = 469

 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 95/438 (21%), Positives = 171/438 (39%), Gaps = 48/438 (10%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN ++    + G   EA+   +Q+   G  PN  TYT++++   N  +++ A+ V   +
Sbjct: 12  TYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLERM 71

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNE-MRDDGKFPGRAMRVALERMQEMGFI 292
               +  T   Y  LV G       + A  +L+E +  D      A    L  + +    
Sbjct: 72  KEKGVSATEATYRSLVHGAFRCLEKERAYRMLSEWIESDPTLHSIAYHTLLYCLSKNDMD 131

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
           + A E  ++M       + R Y  GS             + I   V++   L+   L   
Sbjct: 132 KEAVELAKKM-------SKRGYLLGS---------TTFSIVIPCAVKV---LESSDLCEL 172

Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
           +D++  +  +L  D        ++ K     K    A  +F  +    G    V +   +
Sbjct: 173 VDDFIKKGGNLGFDMYI-----MIIKSFLRCKDISKANKYFSQMV-SDGLLSSVESYNIV 226

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
           +   A+ G VE     I  ++  G      T   +I+ Y         L   HD +    
Sbjct: 227 IDCFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGY-------LKLGNVHDAKAFLK 279

Query: 473 PISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
            + +  LM   + ++SL+  L    +  DA N   EM   G+ P+VQT++ L++     G
Sbjct: 280 MVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNVQTYNVLIHGLCSAG 339

Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKE 577
                 +L + ++ +G+ PDAY F   I ++C+             +S   + PD+ T  
Sbjct: 340 HVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLFNDMSRYGVSPDSYTYN 399

Query: 578 LLKKSLWKEGRRKEAAAV 595
            L K+L  E R  EA  +
Sbjct: 400 ALIKALCDERRVDEAKEI 417



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 67/133 (50%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           ++  ++ +G++E  L T    ++     +  ++N +++ Y K G   +A    + V++ G
Sbjct: 226 VIDCFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGYLKLGNVHDAKAFLKMVMEHG 285

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +P+  T+T +I+ L +  +LD A   FS +    ++   + Y +L+ G        +A 
Sbjct: 286 LMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNVQTYNVLIHGLCSAGHVSKAI 345

Query: 263 SLLNEMRDDGKFP 275
            LLN+M+ DG  P
Sbjct: 346 ELLNKMKMDGITP 358



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 52  SNSSNSLSSLLNDRLLDPF----IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHA 107
           S ++   S +++D LL       IV      A   + AL  ++ ++ +  FS N  T + 
Sbjct: 202 SKANKYFSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQES-GFSPNLVTFNT 260

Query: 108 LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA 167
           L     K    H+ K  +  +     +   + F +L+     +  L+   + ++E  +  
Sbjct: 261 LINGYLKLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWG 320

Query: 168 KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227
              + ++YN+++      G   +A+E   ++  +G  P++ ++   I     + K++ A 
Sbjct: 321 VRPNVQTYNVLIHGLCSAGHVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQ 380

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           ++F+ +    +   S  Y  L++      R DEAK ++  M
Sbjct: 381 KLFNDMSRYGVSPDSYTYNALIKALCDERRVDEAKEIILAM 421



 Score = 42.7 bits (99), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 35/72 (48%)

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
           +G  P+  TY  ++  +   G +D AL +   +    I+     Y +LV+GF    R +E
Sbjct: 4   DGCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEE 63

Query: 261 AKSLLNEMRDDG 272
           A  +L  M++ G
Sbjct: 64  AVCVLERMKEKG 75



 Score = 39.7 bits (91), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 39/209 (18%), Positives = 90/209 (43%), Gaps = 10/209 (4%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           +V  A R      +   + E ++S+P    +    H L   L+K+  + E   L   +S 
Sbjct: 86  LVHGAFRCLEKERAYRMLSEWIESDPTL--HSIAYHTLLYCLSKNDMDKEAVELAKKMSK 143

Query: 131 SKFLNVSVNFMNLM----QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
             +L  S  F  ++    +   +S   ELV    +++ ++   L  + Y +++  + +  
Sbjct: 144 RGYLLGSTTFSIVIPCAVKVLESSDLCELV----DDFIKKGGNLGFDMYIMIIKSFLRCK 199

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
              +A + F Q++ +G + +  +Y ++I+     G+++ ALE    +           + 
Sbjct: 200 DISKANKYFSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFN 259

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            L+ G++ +    +AK+ L  + + G  P
Sbjct: 260 TLINGYLKLGNVHDAKAFLKMVMEHGLMP 288


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 86/415 (20%), Positives = 167/415 (40%), Gaps = 49/415 (11%)

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           L+  ++  QR    S  +Y +++    K+    EA+    ++  +G  PN  TY V+I  
Sbjct: 161 LALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIING 220

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
           +   G++D A E+ + L     +     Y  +++G     R+D+ K L  EM D    P 
Sbjct: 221 MCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPN 280

Query: 277 RAMRVALER-MQEMGFIQGANEFLREM-----LPDKRIKNVRYYEDGSDDDEDENDD--N 328
                 L R     G ++ A + L++M      P+  + N+           D+  D  N
Sbjct: 281 EVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLN 340

Query: 329 NSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSP-E 387
           N G+   YG       +P  ++     ++  +  L    ++     L+ +++R    P E
Sbjct: 341 NMGM---YGC------NPDTIS-----YTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNE 386

Query: 388 TAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLI 447
             ++ F                   + IL + G +E   +LI  +   G  +   T   +
Sbjct: 387 VTFNTF-------------------ICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNAL 427

Query: 448 IDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMI 507
           +  + +  + D+AL+ F++    C P +     + Y++LL  L   +R   A  +L  MI
Sbjct: 428 VHGFCVQGRVDSALELFNN--LPCEPNT-----ITYTTLLTGLCHAERLDAAAELLAGMI 480

Query: 508 FSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
                 +  TF+ L+  F  +G  +   +L + + ++G  P+   F  L+    K
Sbjct: 481 QKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITK 535



 Score = 46.6 bits (109), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 76/412 (18%), Positives = 155/412 (37%), Gaps = 47/412 (11%)

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
           F +++D+  +PN  T+ +++      G ++ A++V   +        +    I++     
Sbjct: 269 FAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICK 328

Query: 255 VERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGAN-EFLREMLPDKRIKNVRY 313
             R D+A   LN M   G  P       + R    G  +    E  +E+LP+   KN   
Sbjct: 329 QGRVDDAYDFLNNMGMYGCNPDTISYTTVLR----GLCRAGRWEHAKELLPEMVRKNC-- 382

Query: 314 YEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTT 373
                         N         +  +  L  +A+   L E  PE    +    +    
Sbjct: 383 ------------PPNEVTFNTFICILCQKGLIEQAI--KLIELMPEYGCSVGIVTYNALV 428

Query: 374 RLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
              C   R     ++A   F  +  +P    +      +LT L     ++    L+A + 
Sbjct: 429 HGFCVQGR----VDSALELFNNLPCEP----NTITYTTLLTGLCHAERLDAAAELLAGMI 480

Query: 434 SDGMRLPFSTIRLIIDFYGISKKADAALKAFHDD-RTLCGPISKFKLMLLYSSLLRTLTK 492
                L   T  +++ F+      + A++  +      C P      ++ +++LL  +TK
Sbjct: 481 QKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPN-----LITFNTLLDGITK 535

Query: 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYM 552
                +A+ +L  ++  G+  D  T+S ++   + +   +   ++   V+  G+ P   M
Sbjct: 536 DCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGM 595

Query: 553 FKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           +  ++ A CK            Y+ ++  MP+ +T  +L + L  EG  KEA
Sbjct: 596 YNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEA 647



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 51/256 (19%), Positives = 106/256 (41%), Gaps = 31/256 (12%)

Query: 372 TTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAK 431
            T+L+  + R  ++ + A       A   G   DV+A   ++    R+G ++   RLIA 
Sbjct: 77  CTKLIRNLCRRGRTSDAARVL--RTAEASGAPVDVFAYNTLVAGYCRYGRLDAARRLIAS 134

Query: 432 LRSDGMRLP---FSTIRLIIDFYGISKKADAALKAFHDD--RTLCGPISKFKLMLLYSSL 486
                M +P   ++   +I       +  DA   A  DD  +  C P      ++ Y+ L
Sbjct: 135 -----MPVPPDAYTYTPIIRGLCDRGRVGDAL--ALLDDMLQRGCQPS-----VVTYTVL 182

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           L  + K     +A+NVL+EM   G  P++ T++ ++     +G     +++ + +   G 
Sbjct: 183 LEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGF 242

Query: 547 EPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAA 594
           +PD   +  +++  C              + +   +P+  T ++L +   + G  + A  
Sbjct: 243 QPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQ 302

Query: 595 VEERCEKINDVPSLAL 610
           V ++  +    P+  L
Sbjct: 303 VLQQMSQHGCTPNTTL 318



 Score = 43.5 bits (101), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 45/216 (20%), Positives = 80/216 (37%), Gaps = 24/216 (11%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   DVY   K++  L R G      R++    + G  +       ++  Y    + DAA
Sbjct: 69  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNTLVAGYCRYGRLDAA 128

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
                  R L   +        Y+ ++R L    R  DA+ +L++M+  G  P V T++ 
Sbjct: 129 -------RRLIASMPVPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTV 181

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSN 568
           L+              +   +R  G  P+   + V+I   C+             LS+  
Sbjct: 182 LLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYG 241

Query: 569 LMPDAATKELLKKSL-----WKEGRRKEAAAVEERC 599
             PD  +   + K L     W + +   A  V+++C
Sbjct: 242 FQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKC 277



 Score = 43.5 bits (101), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 57/115 (49%)

Query: 165 QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
           Q+   L+  ++N+++S + + G   EA+E   Q+++ G  PN  T+  +++ +      +
Sbjct: 481 QKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSE 540

Query: 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM 279
            ALE+   L    +   +  Y  +V+     +R +EA  +L+ ++D G  P   M
Sbjct: 541 EALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGM 595



 Score = 43.1 bits (100), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 44/222 (19%), Positives = 86/222 (38%), Gaps = 6/222 (2%)

Query: 56  NSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALAT 110
           +S   L N+   +P  +T+      L  A   D+A  ++  +    +   N  T + L +
Sbjct: 438 DSALELFNNLPCEPNTITYTTLLTGLCHAERLDAAAELLAGMIQK-DCPLNAVTFNVLVS 496

Query: 111 VLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLL 170
              +     E   L+  +         + F  L+   +   + E  L   +    +   L
Sbjct: 497 FFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSL 556

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
            T +Y+ V+ V ++  +  EA++    V D G  P    Y  ++  L    + D A++ F
Sbjct: 557 DTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFF 616

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           + +           Y+IL+EG        EA+ +L+E+   G
Sbjct: 617 AYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELYAKG 658



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/166 (19%), Positives = 70/166 (42%), Gaps = 7/166 (4%)

Query: 71  IVTHALRSAPNADSALSIMEALKS---NPNFSHNQSTLHALATVLAKSQRNHELKTLIGD 127
           ++ + +      D A  I+  L S    P+     + L  L      ++R  ++K L  +
Sbjct: 216 VIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCA----ARRWDDVKVLFAE 271

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           +   K +   V F  L++++   G +E  +    +  Q     +T   NIV++   K G+
Sbjct: 272 MVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGR 331

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
             +A +    +   G  P++ +YT ++  L   G+ + A E+   +
Sbjct: 332 VDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEM 377


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 110/554 (19%), Positives = 213/554 (38%), Gaps = 77/554 (13%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT---LIGDISSSKFLNVSVNF 140
           S L ++E++ +       Q  +  L T++    R H+++T   ++ ++SS         F
Sbjct: 176 SKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTF 235

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
             LMQ +   G +E  L    +  +     +  + N++++ Y K G+  +A+   +Q I 
Sbjct: 236 TTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIA 295

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
           +G  P+  TY   +  L   G +  AL+V   +           Y  ++         DE
Sbjct: 296 DGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDE 355

Query: 261 AKSLLNEMRDDGKFPG----RAMRVALERMQEMGFIQGANEFLREML-----PDKRIKN- 310
           AK ++N+M D G  P       + VAL     +   + A +  RE+      PD    N 
Sbjct: 356 AKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRL---EEALDLARELTVKGLSPDVYTFNI 412

Query: 311 --------------VRYYED----GSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
                         +R +E+    G   DE           + Y + +        L N 
Sbjct: 413 LINALCKVGDPHLGIRLFEEMKSSGCTPDE-----------VTYNILIDHLCSMGKLGNA 461

Query: 353 LDEWSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
           LD  +    +    +   + T +  +CK +R     E A   F  +  Q G +       
Sbjct: 462 LDLLNEMESNGCPRSTVTYNTIIDALCKKMR----IEEAEEVFDQMDAQ-GISRSAVTFN 516

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY---GISKKADAALKAFHDD 467
            ++  L +   ++    LI ++  +G++    T   I+  Y   G  KKA   L+     
Sbjct: 517 TLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETM--- 573

Query: 468 RTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
                  + F++ ++ Y +L+  L K  R   A+ +L  M   GI P  + ++ ++    
Sbjct: 574 -----TANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLF 628

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK-------------YLSNSNLMPDA 573
            + + +    LF  + + G  PDA  +K++ ++ C+              + N   MP+ 
Sbjct: 629 RRNNLRDALNLFREMTEVGEPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGFMPEF 688

Query: 574 ATKELLKKSLWKEG 587
           ++  +L + L   G
Sbjct: 689 SSFRMLAEGLLNLG 702



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 87/199 (43%), Gaps = 1/199 (0%)

Query: 74  HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKF 133
           H L    +   AL +M+ L        +  T + +   L+K+    E K ++  +     
Sbjct: 310 HGLCQNGHVSHALKVMD-LMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGC 368

Query: 134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE 193
           L  +  F  L+   S+   LE  L    E   +       ++NI+++   K G     + 
Sbjct: 369 LPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIR 428

Query: 194 TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
            F ++   G  P+  TY ++I+HL ++GKL +AL++ + +      R++  Y  +++   
Sbjct: 429 LFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALC 488

Query: 254 GVERFDEAKSLLNEMRDDG 272
              R +EA+ + ++M   G
Sbjct: 489 KKMRIEEAEEVFDQMDAQG 507



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 92/237 (38%), Gaps = 47/237 (19%)

Query: 403 THDVYALEKMLTILAR----HGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           +H V   E   T L +     G +E   R+ AK+   G      T+ ++I+ Y    + +
Sbjct: 225 SHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVE 284

Query: 459 AAL--------KAFHDDRT--------LC--GPISK-FKLMLL------------YSSLL 487
            AL          F  D+         LC  G +S   K+M L            Y++++
Sbjct: 285 DALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVI 344

Query: 488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE 547
             L+K     +A  ++ +M+  G +PD  TF+ L+   + Q   +    L   +   G+ 
Sbjct: 345 NCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLS 404

Query: 548 PDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           PD Y F +LI A CK             + +S   PD  T  +L   L   G+   A
Sbjct: 405 PDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNA 461



 Score = 42.4 bits (98), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 46/235 (19%), Positives = 96/235 (40%), Gaps = 3/235 (1%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+   L S     +AL ++  ++SN     +  T + +   L K  R  E + +   + +
Sbjct: 447 ILIDHLCSMGKLGNALDLLNEMESN-GCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDA 505

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                 +V F  L+     +  ++       +  +     +  +YN +++ Y K G   +
Sbjct: 506 QGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKK 565

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A +    +   G   +  TY  +I  L   G+   AL++   + +  I+ T K Y  +++
Sbjct: 566 AADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQ 625

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERM-QEMGFIQGANEFLREML 303
                    +A +L  EM + G+ P     ++    + +  G I+ A +FL EM+
Sbjct: 626 SLFRRNNLRDALNLFREMTEVGEPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMV 680



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 46/227 (20%), Positives = 88/227 (38%), Gaps = 17/227 (7%)

Query: 380 LRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
           LR    PE A         +  +       E+++  L   G  +L++ L+ ++R +G ++
Sbjct: 63  LREQSDPEAALRMLNSALAREDFAPSSAVYEEIVQKLGTAGAFDLMEGLVREMRREGHQV 122

Query: 440 PFSTIRLIIDFYGISKKADAALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDF 497
               +R  ++ Y   ++ D A+    +  D    G  +     ++++ LL  L +  +  
Sbjct: 123 RAVVVRSFVESYARLRRFDDAVDLVLNQLDNDTFGVQAD---TVVFNHLLNVLVEGSKLK 179

Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
              +V  EM   GI PDV T + L+         +    +   +  +GV PD   F  L+
Sbjct: 180 LLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLM 239

Query: 558 QAYCKYLS------------NSNLMPDAATKELLKKSLWKEGRRKEA 592
           Q + +  S             +   P   T  +L     K GR ++A
Sbjct: 240 QGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDA 286



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 43/219 (19%), Positives = 83/219 (37%), Gaps = 22/219 (10%)

Query: 387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
           E+ ++       QP    DV  L  ++  L R   V     ++ ++ S G+    +T   
Sbjct: 182 ESVYNEMTGRGIQP----DVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTT 237

Query: 447 IIDFYGISKKADAALKAFHDD-RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEE 505
           ++  +      +AAL+         C P       +  + L+    K  R  DA+  +++
Sbjct: 238 LMQGFIEEGSIEAALRVKAKMMEAGCSPTG-----VTVNVLINGYCKMGRVEDALGYIQQ 292

Query: 506 MIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--- 562
            I  G  PD  T++  ++     G      K+  ++ Q G +PD + +  +I    K   
Sbjct: 293 EIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGE 352

Query: 563 ---------YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                     + +   +PD  T   L  +L  + R +EA
Sbjct: 353 LDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEA 391



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 39/205 (19%), Positives = 81/205 (39%), Gaps = 1/205 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+ +AL    +    + + E +KS+   + ++ T + L   L    +      L+ ++ S
Sbjct: 412 ILINALCKVGDPHLGIRLFEEMKSS-GCTPDEVTYNILIDHLCSMGKLGNALDLLNEMES 470

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           +     +V +  ++        +E     +++   +    S  ++N ++    K  +  +
Sbjct: 471 NGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDD 530

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A E   Q++ EG  PN+ TY  ++ H    G +  A ++   +     +     Y  L+ 
Sbjct: 531 ATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLIN 590

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP 275
           G     R   A  LL  MR  G  P
Sbjct: 591 GLCKAGRTQVALKLLRGMRIKGIRP 615



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 93/239 (38%), Gaps = 6/239 (2%)

Query: 75  ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFL 134
           AL S    + AL +   L      S +  T + L   L K    H    L  ++ SS   
Sbjct: 381 ALSSQNRLEEALDLARELTVK-GLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCT 439

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
              V +  L+    + G L   L   NE        ST +YN ++    K  +  EA E 
Sbjct: 440 PDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEV 499

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
           F Q+  +G   ++ T+  +I+ L    ++D A E+   +    ++  +  Y  ++  +  
Sbjct: 500 FDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCK 559

Query: 255 VERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVR 312
                +A  +L  M  +G +         +  + + G  Q A + LR M    RIK +R
Sbjct: 560 QGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGM----RIKGIR 614


>gi|414868428|tpg|DAA46985.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
          Length = 683

 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 95/438 (21%), Positives = 171/438 (39%), Gaps = 48/438 (10%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN ++    + G   EA+   +Q+   G  PN  TYT++++   N  +++ A+ V   +
Sbjct: 217 TYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLERM 276

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNE-MRDDGKFPGRAMRVALERMQEMGFI 292
               +  T   Y  LV G       + A  +L+E +  D      A    L  + +    
Sbjct: 277 KEKGVSATEATYRSLVHGAFRCLEKERAYRMLSEWIESDPTLHSIAYHTLLYCLSKNDMD 336

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
           + A E  ++M       + R Y  GS             + I   V++   L+   L   
Sbjct: 337 KEAVELAKKM-------SKRGYLLGS---------TTFSIVIPCAVKV---LESSDLCEL 377

Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
           +D++  +  +L  D        ++ K     K    A  +F  +    G    V +   +
Sbjct: 378 VDDFIKKGGNLGFDMYI-----MIIKSFLRCKDISKANKYFSQMV-SDGLLSSVESYNIV 431

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
           +   A+ G VE     I  ++  G      T   +I+ Y         L   HD +    
Sbjct: 432 IDCFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGY-------LKLGNVHDAKAFLK 484

Query: 473 PISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
            + +  LM   + ++SL+  L    +  DA N   EM   G+ P+VQT++ L++     G
Sbjct: 485 MVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNVQTYNVLIHGLCSAG 544

Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKE 577
                 +L + ++ +G+ PDAY F   I ++C+             +S   + PD+ T  
Sbjct: 545 HVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLFNDMSRYGVSPDSYTYN 604

Query: 578 LLKKSLWKEGRRKEAAAV 595
            L K+L  E R  EA  +
Sbjct: 605 ALIKALCDERRVDEAKEI 622



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 79/163 (48%), Gaps = 8/163 (4%)

Query: 115 SQRNHELKTLIGD--ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
           S+ N     ++ D  +SS +  N+ ++       ++ +G++E  L T    ++     + 
Sbjct: 407 SKANKYFSQMVSDGLLSSVESYNIVID------CFAKAGEVERALETIKVMQESGFSPNL 460

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            ++N +++ Y K G   +A    + V++ G +P+  T+T +I+ L +  +LD A   FS 
Sbjct: 461 VTFNTLINGYLKLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSE 520

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +    ++   + Y +L+ G        +A  LLN+M+ DG  P
Sbjct: 521 MSEWGVRPNVQTYNVLIHGLCSAGHVSKAIELLNKMKMDGITP 563



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 89/214 (41%), Gaps = 10/214 (4%)

Query: 65  RLLDPFIVTHALRSAPNADSALSI---MEALKSNPNFSHNQSTLHALATVLAKSQRNHEL 121
           R L P  V  AL+ A   +  L +   + A +   +F+ ++S   AL   L +       
Sbjct: 71  RQLGPRFVVRALQHAA-GEPLLCVRLYVWASRFGQHFARDRSVRRALGDALLRRGPVVLS 129

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKL---LSTESYNIV 178
             L+ D+ S       V+   L     + G L L       + Q  +L    ST  YN V
Sbjct: 130 AALVADVRSC---GCEVSEELLCALVESWGRLGLAHYAHEVFVQVPRLGLRPSTAIYNAV 186

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI 238
           ++   + G    A   F+Q+  +G  P+  TY  ++  +   G +D AL +   +    I
Sbjct: 187 IAASVRAGAVDAAYLRFQQMPADGCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGI 246

Query: 239 KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +     Y +LV+GF    R +EA  +L  M++ G
Sbjct: 247 RPNVVTYTMLVDGFCNASRVEEAVCVLERMKEKG 280



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 52  SNSSNSLSSLLNDRLLDPF----IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHA 107
           S ++   S +++D LL       IV      A   + AL  ++ ++ +  FS N  T + 
Sbjct: 407 SKANKYFSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQES-GFSPNLVTFNT 465

Query: 108 LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA 167
           L     K    H+ K  +  +     +   + F +L+     +  L+   + ++E  +  
Sbjct: 466 LINGYLKLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWG 525

Query: 168 KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227
              + ++YN+++      G   +A+E   ++  +G  P++ ++   I     + K++ A 
Sbjct: 526 VRPNVQTYNVLIHGLCSAGHVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQ 585

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           ++F+ +    +   S  Y  L++      R DEAK ++  M
Sbjct: 586 KLFNDMSRYGVSPDSYTYNALIKALCDERRVDEAKEIILAM 626



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 39/209 (18%), Positives = 90/209 (43%), Gaps = 10/209 (4%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           +V  A R      +   + E ++S+P    +    H L   L+K+  + E   L   +S 
Sbjct: 291 LVHGAFRCLEKERAYRMLSEWIESDPTL--HSIAYHTLLYCLSKNDMDKEAVELAKKMSK 348

Query: 131 SKFLNVSVNFMNLM----QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
             +L  S  F  ++    +   +S   ELV    +++ ++   L  + Y +++  + +  
Sbjct: 349 RGYLLGSTTFSIVIPCAVKVLESSDLCELV----DDFIKKGGNLGFDMYIMIIKSFLRCK 404

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
              +A + F Q++ +G + +  +Y ++I+     G+++ ALE    +           + 
Sbjct: 405 DISKANKYFSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFN 464

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            L+ G++ +    +AK+ L  + + G  P
Sbjct: 465 TLINGYLKLGNVHDAKAFLKMVMEHGLMP 493


>gi|414868427|tpg|DAA46984.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
          Length = 674

 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 95/438 (21%), Positives = 171/438 (39%), Gaps = 48/438 (10%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN ++    + G   EA+   +Q+   G  PN  TYT++++   N  +++ A+ V   +
Sbjct: 217 TYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLERM 276

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNE-MRDDGKFPGRAMRVALERMQEMGFI 292
               +  T   Y  LV G       + A  +L+E +  D      A    L  + +    
Sbjct: 277 KEKGVSATEATYRSLVHGAFRCLEKERAYRMLSEWIESDPTLHSIAYHTLLYCLSKNDMD 336

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
           + A E  ++M       + R Y  GS             + I   V++   L+   L   
Sbjct: 337 KEAVELAKKM-------SKRGYLLGS---------TTFSIVIPCAVKV---LESSDLCEL 377

Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
           +D++  +  +L  D        ++ K     K    A  +F  +    G    V +   +
Sbjct: 378 VDDFIKKGGNLGFDMYI-----MIIKSFLRCKDISKANKYFSQMV-SDGLLSSVESYNIV 431

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
           +   A+ G VE     I  ++  G      T   +I+ Y         L   HD +    
Sbjct: 432 IDCFAKAGEVERALETIKVMQESGFSPNLVTFNTLINGY-------LKLGNVHDAKAFLK 484

Query: 473 PISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
            + +  LM   + ++SL+  L    +  DA N   EM   G+ P+VQT++ L++     G
Sbjct: 485 MVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNVQTYNVLIHGLCSAG 544

Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKE 577
                 +L + ++ +G+ PDAY F   I ++C+             +S   + PD+ T  
Sbjct: 545 HVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLFNDMSRYGVSPDSYTYN 604

Query: 578 LLKKSLWKEGRRKEAAAV 595
            L K+L  E R  EA  +
Sbjct: 605 ALIKALCDERRVDEAKEI 622



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 79/163 (48%), Gaps = 8/163 (4%)

Query: 115 SQRNHELKTLIGD--ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
           S+ N     ++ D  +SS +  N+ ++       ++ +G++E  L T    ++     + 
Sbjct: 407 SKANKYFSQMVSDGLLSSVESYNIVID------CFAKAGEVERALETIKVMQESGFSPNL 460

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            ++N +++ Y K G   +A    + V++ G +P+  T+T +I+ L +  +LD A   FS 
Sbjct: 461 VTFNTLINGYLKLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSE 520

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +    ++   + Y +L+ G        +A  LLN+M+ DG  P
Sbjct: 521 MSEWGVRPNVQTYNVLIHGLCSAGHVSKAIELLNKMKMDGITP 563



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 89/214 (41%), Gaps = 10/214 (4%)

Query: 65  RLLDPFIVTHALRSAPNADSALSI---MEALKSNPNFSHNQSTLHALATVLAKSQRNHEL 121
           R L P  V  AL+ A   +  L +   + A +   +F+ ++S   AL   L +       
Sbjct: 71  RQLGPRFVVRALQHAA-GEPLLCVRLYVWASRFGQHFARDRSVRRALGDALLRRGPVVLS 129

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKL---LSTESYNIV 178
             L+ D+ S       V+   L     + G L L       + Q  +L    ST  YN V
Sbjct: 130 AALVADVRSC---GCEVSEELLCALVESWGRLGLAHYAHEVFVQVPRLGLRPSTAIYNAV 186

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI 238
           ++   + G    A   F+Q+  +G  P+  TY  ++  +   G +D AL +   +    I
Sbjct: 187 IAASVRAGAVDAAYLRFQQMPADGCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGI 246

Query: 239 KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +     Y +LV+GF    R +EA  +L  M++ G
Sbjct: 247 RPNVVTYTMLVDGFCNASRVEEAVCVLERMKEKG 280



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 52  SNSSNSLSSLLNDRLLDPF----IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHA 107
           S ++   S +++D LL       IV      A   + AL  ++ ++ +  FS N  T + 
Sbjct: 407 SKANKYFSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQES-GFSPNLVTFNT 465

Query: 108 LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA 167
           L     K    H+ K  +  +     +   + F +L+     +  L+   + ++E  +  
Sbjct: 466 LINGYLKLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWG 525

Query: 168 KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227
              + ++YN+++      G   +A+E   ++  +G  P++ ++   I     + K++ A 
Sbjct: 526 VRPNVQTYNVLIHGLCSAGHVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQ 585

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           ++F+ +    +   S  Y  L++      R DEAK ++  M
Sbjct: 586 KLFNDMSRYGVSPDSYTYNALIKALCDERRVDEAKEIILAM 626



 Score = 40.0 bits (92), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 39/209 (18%), Positives = 90/209 (43%), Gaps = 10/209 (4%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           +V  A R      +   + E ++S+P    +    H L   L+K+  + E   L   +S 
Sbjct: 291 LVHGAFRCLEKERAYRMLSEWIESDPTL--HSIAYHTLLYCLSKNDMDKEAVELAKKMSK 348

Query: 131 SKFLNVSVNFMNLM----QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
             +L  S  F  ++    +   +S   ELV    +++ ++   L  + Y +++  + +  
Sbjct: 349 RGYLLGSTTFSIVIPCAVKVLESSDLCELV----DDFIKKGGNLGFDMYIMIIKSFLRCK 404

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
              +A + F Q++ +G + +  +Y ++I+     G+++ ALE    +           + 
Sbjct: 405 DISKANKYFSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFN 464

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            L+ G++ +    +AK+ L  + + G  P
Sbjct: 465 TLINGYLKLGNVHDAKAFLKMVMEHGLMP 493


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 105/492 (21%), Positives = 189/492 (38%), Gaps = 52/492 (10%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L++ + T+G+LE+ L  + E  +   L +  +YN ++  Y K  K  EA +  R +  +G
Sbjct: 209 LIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKG 268

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             PN  +Y V+I  L   G++    E+   +   R       +  L+ G+  V  F +A 
Sbjct: 269 LNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQAL 328

Query: 263 SLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDD 321
            L  EM  +G  P       L   M + G +  A EFL +M       N R Y    D  
Sbjct: 329 VLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGF 388

Query: 322 EDENDDNNSGVRIAYGV---QLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCK 378
             +       ++ AY +    ++    P  +          ++  + DA  +    +   
Sbjct: 389 SQQ-----GFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERG 443

Query: 379 VLRHFKSPETAWHFFC-----WVAYQ-------PGYTHDVYALEKMLTILARHGHVELVD 426
            +    S  T    FC       A+Q        G + DV     ++  L +   +  V 
Sbjct: 444 FIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVC 503

Query: 427 RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSL 486
            L  ++ S G+     T   +I+ Y I    D AL+  HD+    G       ++ Y+ L
Sbjct: 504 DLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALR-LHDEMIQKGFSPD---IVTYNVL 559

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS---------------GLMYHFALQGDE 531
           +    K  R  +A  +L ++++   VP+  T++                LM  F ++G  
Sbjct: 560 INGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLM 619

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELL 579
               ++   + Q G + +  ++ V+I  + K             + +S   P + T   L
Sbjct: 620 NEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMAL 679

Query: 580 KKSLWKEGRRKE 591
            KSL+ EG+  E
Sbjct: 680 AKSLYHEGKEVE 691



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 87/437 (19%), Positives = 164/437 (37%), Gaps = 51/437 (11%)

Query: 174 SYNIVMSVYAKTGKNFEAVE-TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           SYN ++    +T ++ +  E  F+++++ G  PN  TY ++I      G L+  L  F  
Sbjct: 169 SYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGE 228

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGF 291
           +           Y  +++ +  + +  EA  LL  M   G  P   +  V +  +   G 
Sbjct: 229 MERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQ 288

Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALAN 351
           ++  +E L EM   KR    RY  D                R+ +   +  + +      
Sbjct: 289 MKETSEILEEM--SKR----RYVPD----------------RVTFNTLINGYCNVGNFHQ 326

Query: 352 TLDEWSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYAL 409
            L   +  V + L+     +TT +  +CK     ++ E          +  G T+     
Sbjct: 327 ALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTT--- 383

Query: 410 EKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD--D 467
             ++   ++ G ++   +++ ++  +G      T   +I+ + I  + + A     +  +
Sbjct: 384 --LIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIE 441

Query: 468 RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
           R     +        YS+++    + +    A  +  EM+  GI PDV T+S L+     
Sbjct: 442 RGFIPDVVS------YSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCK 495

Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAAT 575
           Q     V  LF  +   G+ PD   +  LI AYC              +      PD  T
Sbjct: 496 QRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVT 555

Query: 576 KELLKKSLWKEGRRKEA 592
             +L     K+ R KEA
Sbjct: 556 YNVLINGFNKQSRTKEA 572



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 82/201 (40%), Gaps = 6/201 (2%)

Query: 76  LRSAPNADSALSIMEALKSNPNF-SHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFL 134
           LR    A   L +M     NPN  S+N      +   L +  +  E   ++ ++S  +++
Sbjct: 251 LRKIGEAFKLLRLMALKGLNPNLISYN-----VVINGLCREGQMKETSEILEEMSKRRYV 305

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
              V F  L+  Y   G+    L    E  +     +  +Y  +++   K G    A+E 
Sbjct: 306 PDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEF 365

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
             Q+ D G  PN RTYT +I+     G L  A ++   +       T   Y  L+ G   
Sbjct: 366 LDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCI 425

Query: 255 VERFDEAKSLLNEMRDDGKFP 275
           + R ++A  LL EM + G  P
Sbjct: 426 LGRMEDASGLLQEMIERGFIP 446



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 13/140 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF 538
           +L Y+++L  + + K+    A  + +EM+ SG+ P+V T++ L+  F   G+ ++    F
Sbjct: 167 VLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFF 226

Query: 539 SMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKE 586
             + +NG  P+   +  +I AYCK             ++   L P+  +  ++   L +E
Sbjct: 227 GEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCRE 286

Query: 587 GRRKEAAAVEERCEKINDVP 606
           G+ KE + + E   K   VP
Sbjct: 287 GQMKETSEILEEMSKRRYVP 306



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 21/202 (10%)

Query: 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
           +T  +L   L K +R  E+  L  ++ S       V + +L+  Y   GDL+  L   +E
Sbjct: 484 ATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDE 543

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
             Q+       +YN++++ + K  +  EA     +++ E ++PN  TY  +I++  N   
Sbjct: 544 MIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNN--- 600

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRV 281
               LE  SAL LM+             GF      +EA  +L  M   G K       V
Sbjct: 601 ----LEFKSALALMK-------------GFCMKGLMNEADRVLESMLQKGYKLNEEVYNV 643

Query: 282 ALERMQEMGFIQGANEFLREML 303
            +    ++G I+ A    +EML
Sbjct: 644 IIHGHSKVGNIEKAYNLYKEML 665



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 14/133 (10%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YSSL++ L K +R  +  ++ +EM+  G+ PD  T++ L+  + ++GD     +L   + 
Sbjct: 486 YSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMI 545

Query: 543 QNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKE---LLKKSLWKEGRRKEAA--AVEE 597
           Q G  PD   + VLI  + K          + TKE   LL K L++E    E     + +
Sbjct: 546 QKGFSPDIVTYNVLINGFNK---------QSRTKEAKRLLLKLLYEESVPNEITYNTLID 596

Query: 598 RCEKINDVPSLAL 610
            C  +    +LAL
Sbjct: 597 NCNNLEFKSALAL 609


>gi|413953500|gb|AFW86149.1| hypothetical protein ZEAMMB73_846563 [Zea mays]
          Length = 1039

 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 128/620 (20%), Positives = 224/620 (36%), Gaps = 115/620 (18%)

Query: 80  PNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
           P A +  S ME+ K  P+    +     L  +  K     E +   G+I  +  LN    
Sbjct: 365 PKALALFSDMESSKVIPD----EVIYGILIRIYGKLGLYEEARQTFGEIEKAGLLNDEQT 420

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           ++ + Q +  +GD +  L      + R    S  SY+ ++  +        A +TFR + 
Sbjct: 421 YVAMAQVHLNAGDCDRALEVLESMKTRGVKPSRFSYSALLRCHVAKEDVVAAEDTFRALS 480

Query: 200 D-EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP------------------------ 234
             +  +P++     M+   + LG+LD A  + S L                         
Sbjct: 481 QSQHGLPDAFCCNDMLRLYMRLGRLDKARALVSVLLREDGFQLDENLSTTVMEFYCKSGM 540

Query: 235 -------LMRIKRTSK-----QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA 282
                  L  I+R  K       L+LVE +      +    +L E          A  VA
Sbjct: 541 VEDAEKLLEDIQRNRKPVKVPTLLLLVEMYA----RNRPSVVLEERSSSRALGSSAASVA 596

Query: 283 LERMQEM-GFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLK 341
           L  + +M G +   +  +  +  +      R+  D   +   + DD+     I    Q K
Sbjct: 597 LNSLLDMPGGLSSVSLLISRLAREGSTDEARFIYDQLTELGTKPDDSAVATLIVQYGQAK 656

Query: 342 PWLDPKALANTLDEWSPE---VVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAY 398
                + L ++     P+   V + + DA         CK  R     E A+H F  +A 
Sbjct: 657 QLERAQELFDSASASFPDGALVCNAMVDA--------FCKCGR----AEDAYHLFMEMAD 704

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIA---------------------------- 430
           Q  Y + V A   ++T L +HG  + V+ ++                             
Sbjct: 705 QGSYRNAVTA-SILVTHLTKHGKFQEVENIMHGCFRDEVQLDTALYNTFIKSMLESGKLH 763

Query: 431 -------KLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLY 483
                  ++ S G+     T   +I  YG   K D A++ F   + L  PI +     +Y
Sbjct: 764 SAVSIYDRMVSSGVSQSMQTFNTMISVYGKGGKLDKAVEMFAAAQELGLPIDE----KMY 819

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           +++L    K  R  +A  + + M   GI P   +F+ ++  +A  G     + +F  ++ 
Sbjct: 820 TNMLSLYGKAGRHQEASLMFKRMKEDGIRPGKISFNSMINAYATSGLFSEAKSVFQEMQD 879

Query: 544 NGVEPDAYMFKVLIQAYCK--------------YLSNSNLMPDAATKELLKKSLWKEGRR 589
            G  PD++ +  LI+AY +               LS+SN  P       L  +  KEGR 
Sbjct: 880 CGHAPDSFSYLALIRAYTEAKLYTEAEEAIRTMTLSSSNTTPSCPHFSHLILAFLKEGRV 939

Query: 590 KEAAAVEERCEKINDVPSLA 609
            EA  +  +  ++   P LA
Sbjct: 940 GEARRIYGQMMEVGVAPDLA 959



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 65/139 (46%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           +V    L+  Y+  G  E ++  ++  R R  +     YN ++S   K   + + +  ++
Sbjct: 208 AVACGTLLCAYARWGRHEDMMLFYSAVRGRGLVPPISVYNYMISSLQKQKLHGKVIHVWK 267

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           Q+++ GA PN  TYTV+I  LV    L+ A+++F  +   R       Y +L+       
Sbjct: 268 QMLEAGAPPNQFTYTVVIGSLVKEDLLEEAVDLFGEMRRRRFVPEEATYSLLISASSRHG 327

Query: 257 RFDEAKSLLNEMRDDGKFP 275
           + ++A  L  EM+  G  P
Sbjct: 328 KGEQALRLFEEMKGQGIAP 346



 Score = 46.6 bits (109), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 109/279 (39%), Gaps = 57/279 (20%)

Query: 365 ADAKFV--WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHV 422
           A A FV   T R +C VLR  +    A  FF W+  Q  Y   V A   +L +  R G V
Sbjct: 130 AMASFVTRLTFREMCVVLREQRGWRQARDFFAWMKLQLCYEPSVVAYTVLLRLYGRVGKV 189

Query: 423 ELVDRLIAKL-----------------------RSDGMRLPFSTIR-------LIIDFYG 452
           +L +    ++                       R + M L +S +R       + +  Y 
Sbjct: 190 KLAEETFLEMLQVGCEPDAVACGTLLCAYARWGRHEDMMLFYSAVRGRGLVPPISVYNYM 249

Query: 453 IS--KKADAALKAFHDDRTLC---GPISKFKLMLLYSSLLRTLTKCKRDF--DAINVLEE 505
           IS  +K     K  H  + +     P ++F   ++  SL+      K D   +A+++  E
Sbjct: 250 ISSLQKQKLHGKVIHVWKQMLEAGAPPNQFTYTVVIGSLV------KEDLLEEAVDLFGE 303

Query: 506 MIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY-- 563
           M     VP+  T+S L+   +  G  +   +LF  ++  G+ P  Y    L+  +CK   
Sbjct: 304 MRRRRFVPEEATYSLLISASSRHGKGEQALRLFEEMKGQGIAPSNYTCASLLALHCKNED 363

Query: 564 ----------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                     + +S ++PD     +L +   K G  +EA
Sbjct: 364 YPKALALFSDMESSKVIPDEVIYGILIRIYGKLGLYEEA 402


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 99/522 (18%), Positives = 194/522 (37%), Gaps = 38/522 (7%)

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
           N     N  T +A+  +L    +  E + ++G I        +  + +L+  +  +G+L+
Sbjct: 195 NSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLD 254

Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
           L    ++   +     ++ +Y+ +++     G+  EA++   ++ID+G  P    YT+ I
Sbjct: 255 LAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPI 314

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
             L + G+   A+++   +         + Y  L+ G     +F+ A  + ++M  DG  
Sbjct: 315 VSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLV 374

Query: 275 PGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVR 333
           P      AL  ++   G  + A      ML    + N   Y          N        
Sbjct: 375 PTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETY----------NVIIKGFCS 424

Query: 334 IAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFF 393
           I Y  +     D    A      SP V++        +    +   +R  +         
Sbjct: 425 IGYIQKATAIFDQMLKAGP----SPNVITYNIIIHIYFKQGYMNNAMRLLE--------- 471

Query: 394 CWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGI 453
             +    G   D +    +++  +R G +E    L  ++   G+     T   II+ Y  
Sbjct: 472 --MMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLT 529

Query: 454 SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP 513
             K D AL  F       G +        Y+ ++   +K  R  +A N   +M+  G++P
Sbjct: 530 VAKVDDALALFW-KMVESGNVPSSG---TYNMMISGFSKTNRISEAENFCGKMVKQGLLP 585

Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--------YLS 565
           +V T++  +      G   +  K+F  +++    P+   +  LI   C+         L 
Sbjct: 586 NVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLL 645

Query: 566 NSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
           +    P+  T   L + L  +GR  EA  + E  +K    PS
Sbjct: 646 DDGCEPNVDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPS 687



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 97/243 (39%), Gaps = 39/243 (16%)

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           V  +L    + E+   FF WV+    + HD+     ML  L R       DRL       
Sbjct: 81  VVNLLDTHNNTESVLRFFHWVSRTHFFKHDMSCFVSMLNRLVR-------DRLF------ 127

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLL-YSSLLRTLTKCK 494
              +P   +R+++     S + +  +K      +       F   L  +S+LL  L K  
Sbjct: 128 ---VPADNVRILMI---KSCRNEGEVKRVIQVLSEINTTYDFGYTLYSFSTLLIQLGKFD 181

Query: 495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK 554
            D    +V  EM+ SGI P++ TF+ ++     +G  +  + +   +   G  PD + + 
Sbjct: 182 MDGLGRDVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYT 241

Query: 555 VLIQAYCKYLSNSNL---------------MPDAATKELLKKSLWKEGRRKEAA-AVEER 598
            LI  +CK   N NL                P++ T   L   L  EGR +EA   +EE 
Sbjct: 242 SLIIGHCK---NGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEM 298

Query: 599 CEK 601
            +K
Sbjct: 299 IDK 301



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 42/205 (20%), Positives = 91/205 (44%), Gaps = 5/205 (2%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+ H        ++A+ ++E +K N     +  T   L +  ++  +     +L  ++  
Sbjct: 452 IIIHIYFKQGYMNNAMRLLEMMKGN-GLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVE 510

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                  V +  ++  Y T   ++  L+ + +  +   + S+ +YN+++S ++KT +  E
Sbjct: 511 HGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISE 570

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A     +++ +G +PN  TYT  I+ L   G+   A ++F  +           Y  L++
Sbjct: 571 AENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLID 630

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP 275
           G     + ++A+ LL    DDG  P
Sbjct: 631 GLCQEGQAEDAERLL----DDGCEP 651



 Score = 42.4 bits (98), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 50/273 (18%), Positives = 110/273 (40%), Gaps = 17/273 (6%)

Query: 40  AQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKS 94
           A LI       +   + SL + + +  + P +VT+        +    D AL++   +  
Sbjct: 486 ANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVE 545

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
           + N   +  T + + +  +K+ R  E +   G +     L   + + + +     +G   
Sbjct: 546 SGNVP-SSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTS 604

Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
           L    ++E ++R    +  +Y+ ++    + G+     E   +++D+G  PN  TYT ++
Sbjct: 605 LAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQ----AEDAERLLDDGCEPNVDTYTTLV 660

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
             L   G+   A ++  ++    ++ + + Y  L+ G       + A  + + M   G  
Sbjct: 661 RGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGFQ 720

Query: 275 PG----RAMRVALERMQEMGFIQGANEFLREML 303
           P     +A+  AL +     F Q A    + ML
Sbjct: 721 PCLSDYKALICALCKAN---FRQKAQCMFQTML 750


>gi|302772122|ref|XP_002969479.1| hypothetical protein SELMODRAFT_61155 [Selaginella moellendorffii]
 gi|300162955|gb|EFJ29567.1| hypothetical protein SELMODRAFT_61155 [Selaginella moellendorffii]
          Length = 489

 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 101/245 (41%), Gaps = 20/245 (8%)

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           VC+VL+  +    A  FF W    P + HD      M+ +L   G+     +L  ++R  
Sbjct: 3   VCEVLKRVRDWRVALEFFTWAKSVPFFKHDAMNYSMMIRVLGTCGNYTQGRKLFDEMREK 62

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCK 494
           G++    T+  +I  YG + + D A+  F +      P   F+  +  Y+ L+  L K  
Sbjct: 63  GLKPDLVTVNNMIKCYGCANRVDDAMDLFRE-----FPDFGFEPDVCTYALLIDLLGKAG 117

Query: 495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK 554
           R  +   +  E+    + PD   F+ ++ +F+   D  +  +    ++  G+ P    + 
Sbjct: 118 RVSEVRKLFLELQSRKLKPDEYVFNSMIANFSKWKDLGLADEALDYMKVCGIRPSTVTYA 177

Query: 555 VLI-------------QAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEK 601
           +++             + YC+YL NSNL PD              GR +EA    E  EK
Sbjct: 178 IVLNMYAKSLNFMLAEKIYCEYL-NSNLPPDLYVYNNAILFFGLAGRCREAEWAVEDIEK 236

Query: 602 INDVP 606
              VP
Sbjct: 237 AGLVP 241



 Score = 42.7 bits (99), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 73/170 (42%), Gaps = 7/170 (4%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           D Y    M+   ++   + L D  +  ++  G+R    T  ++++ Y  S     A K +
Sbjct: 137 DEYVFNSMIANFSKWKDLGLADEALDYMKVCGIRPSTVTYAIVLNMYAKSLNFMLAEKIY 196

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
            +      P      + +Y++ +       R  +A   +E++  +G+VPD  ++  ++  
Sbjct: 197 CEYLNSNLPPD----LYVYNNAILFFGLAGRCREAEWAVEDIEKAGLVPDKFSYCTIISA 252

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAA 574
           +A QG     +K F   R  G+ P   M   LI AY K L   +L P AA
Sbjct: 253 WARQGCAPDAKKWFDKARSRGITPSPEMCNALIDAYIKAL---DLEPVAA 299


>gi|297806669|ref|XP_002871218.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317055|gb|EFH47477.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1029

 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 115/256 (44%), Gaps = 26/256 (10%)

Query: 359 EVVSL---LADAKFVWTTRLVCKVL-RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT 414
           E+VS+   L    F +   +V  VL R FK P  A  FF WV  + G++H V     ML+
Sbjct: 137 EIVSMEDRLEILSFRFEPEIVENVLKRCFKVPHLAMRFFNWVKLKDGFSHRVGIYNTMLS 196

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI 474
           I     ++++VD L+ ++          T  ++I  YG +KK    L  F   R      
Sbjct: 197 IAGEARNLDMVDELVKEMEKHACDKDIRTWTILISVYGKAKKIGKGLLVFEKMRK----- 251

Query: 475 SKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
           S F+L    Y+ ++R+L    R   A+   +EM+  GI   ++T+  L+   A      +
Sbjct: 252 SGFELDAAAYNIMIRSLCIAGRGDLALEFYKEMMEKGITFGLRTYKMLLDCIAKSEKVDV 311

Query: 534 VQKLF-SMVRQNGV-EPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELL 579
           VQ +   MVR   + E DA+ +  L++++C            + L N  +  DA   E+L
Sbjct: 312 VQSIADDMVRICEISEHDAFGY--LLKSFCVSGKIKEALELIRELKNKEMCLDAKYFEIL 369

Query: 580 KKSLWKEGRRKEAAAV 595
            K L +  R  +A  +
Sbjct: 370 VKGLCRANRMVDALEI 385



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 10/168 (5%)

Query: 371 WTTRLVCKVLRHFKSPETA-WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
           +T  LV +VLR+ K    A   FF WV  + GY H+  A    + +       + +  L 
Sbjct: 640 FTPELVVEVLRNAKIQGNAVLRFFSWVGKRNGYKHNSEAYNMSIKVAGCGKDFKQMRSLF 699

Query: 430 AKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD--DRTLCGPISKFKLMLLYSSLL 487
            ++R  G  +   T  ++I  YG +   + A++ F +  D  L    S FK ++     +
Sbjct: 700 YEMRRQGCLITQDTWAIMIMQYGRTGLTNIAIRTFKEMKDMGLIPSSSTFKCLI----TV 755

Query: 488 RTLTKCKRDFDAINVLEEMIFSGIVPD---VQTFSGLMYHFALQGDEK 532
               K +   +A     EMI SG VPD   VQ + G +       D K
Sbjct: 756 LCEKKGRNVEEATKTFREMIRSGFVPDRELVQDYLGCLCEVGNTKDAK 803



 Score = 46.2 bits (108), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 50/111 (45%)

Query: 165 QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
           +R KL  +  Y I++S Y +     +A+E F  +   G  P   TYT +++ L  L + +
Sbjct: 390 KRRKLDDSNVYGIIISGYLRQNDVSKALEQFEIIKKSGRPPRVSTYTEIMQQLFKLKQFE 449

Query: 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               +FS +    I+  S     +V G +G  R  EA  +   M + G  P
Sbjct: 450 KGCNLFSEMIESGIEPDSVAITAVVAGHLGQNRVAEAWKVFGSMEEKGIKP 500



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 71/149 (47%), Gaps = 5/149 (3%)

Query: 90  EALKSNPNFSHNQSTL--HALATVLAKSQRNHELKTLIGDISSSKFLNVSVN---FMNLM 144
           EAL    +F  ++S L  +   +++    +  +L   +  ++S K + +      + +L+
Sbjct: 835 EALSELASFEGDRSLLDQYTYGSIVHGLLQRGDLHKALDKVNSMKEIGIKPGVHVYTSLI 894

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204
             +      E VL T ++ ++ +   S  +Y  ++  Y   GK  EA + FR + ++G  
Sbjct: 895 VHFFKEKQFEKVLETCHKMKEESCEPSVVTYTAMICGYMSLGKVEEAWKAFRNIEEKGTS 954

Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           P+ +TY+  I  L   GK + AL++ S +
Sbjct: 955 PDFKTYSKFINCLCQAGKSEDALKLLSEM 983



 Score = 44.7 bits (104), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 49/247 (19%), Positives = 97/247 (39%), Gaps = 41/247 (16%)

Query: 69  PFIVTHALRSAP-NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD 127
           P +V   LR+A    ++ L     +     + HN    +    V    +   ++++L  +
Sbjct: 642 PELVVEVLRNAKIQGNAVLRFFSWVGKRNGYKHNSEAYNMSIKVAGCGKDFKQMRSLFYE 701

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA-KTG 186
           +     L     +  ++  Y  +G   + + T+ E +    + S+ ++  +++V   K G
Sbjct: 702 MRRQGCLITQDTWAIMIMQYGRTGLTNIAIRTFKEMKDMGLIPSSSTFKCLITVLCEKKG 761

Query: 187 KNFE-AVETFRQVIDEGAIPNSR----------------------------------TYT 211
           +N E A +TFR++I  G +P+                                     Y+
Sbjct: 762 RNVEEATKTFREMIRSGFVPDRELVQDYLGCLCEVGNTKDAKSCLDSLGKIGFPVPVAYS 821

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL--LNEMR 269
           + I  L  +GKL+ AL   ++    R       Y  +V G   ++R D  K+L  +N M+
Sbjct: 822 IYIRALSRIGKLEEALSELASFEGDRSLLDQYTYGSIVHGL--LQRGDLHKALDKVNSMK 879

Query: 270 DDGKFPG 276
           + G  PG
Sbjct: 880 EIGIKPG 886



 Score = 43.1 bits (100), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 88/213 (41%), Gaps = 15/213 (7%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           LL  F V+  ++ A      L ++  LK N     +      L   L ++ R  +   ++
Sbjct: 334 LLKSFCVSGKIKEA------LELIRELK-NKEMCLDAKYFEILVKGLCRANRMVDALEIV 386

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
            DI   + L+ S  +  ++  Y    D+   L  +   ++  +     +Y  +M    K 
Sbjct: 387 -DIMKRRKLDDSNVYGIIISGYLRQNDVSKALEQFEIIKKSGRPPRVSTYTEIMQQLFKL 445

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
            +  +    F ++I+ G  P+S   T ++   +   ++  A +VF ++    IK T K Y
Sbjct: 446 KQFEKGCNLFSEMIESGIEPDSVAITAVVAGHLGQNRVAEAWKVFGSMEEKGIKPTWKSY 505

Query: 246 LILVEGFVGVERFDEAKSLLNEM-------RDD 271
            I ++      R+DE  +L N+M       RDD
Sbjct: 506 SIFMKELCRSSRYDEIITLFNQMHASKIAIRDD 538



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 2/126 (1%)

Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV-ETFRQVIDEGAIPNSRT 209
           GDL   L   N  ++         Y  ++  + K  K FE V ET  ++ +E   P+  T
Sbjct: 866 GDLHKALDKVNSMKEIGIKPGVHVYTSLIVHFFKE-KQFEKVLETCHKMKEESCEPSVVT 924

Query: 210 YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
           YT MI   ++LGK++ A + F  +         K Y   +       + ++A  LL+EM 
Sbjct: 925 YTAMICGYMSLGKVEEAWKAFRNIEEKGTSPDFKTYSKFINCLCQAGKSEDALKLLSEML 984

Query: 270 DDGKFP 275
           D G  P
Sbjct: 985 DKGIAP 990



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 1/165 (0%)

Query: 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT 211
           +L++V     E  + A      ++ I++SVY K  K  + +  F ++   G   ++  Y 
Sbjct: 203 NLDMVDELVKEMEKHACDKDIRTWTILISVYGKAKKIGKGLLVFEKMRKSGFELDAAAYN 262

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
           +MI  L   G+ D ALE +  +    I    + Y +L++     E+ D  +S+ ++M   
Sbjct: 263 IMIRSLCIAGRGDLALEFYKEMMEKGITFGLRTYKMLLDCIAKSEKVDVVQSIADDMVRI 322

Query: 272 GKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
            +     A    L+     G I+ A E +RE+   +   + +Y+E
Sbjct: 323 CEISEHDAFGYLLKSFCVSGKIKEALELIRELKNKEMCLDAKYFE 367


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 96/471 (20%), Positives = 189/471 (40%), Gaps = 38/471 (8%)

Query: 98  FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVL 157
            S +  TLH L     + QR     +++  I         V F  L+      G     +
Sbjct: 153 LSPDTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAV 212

Query: 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217
             +++   R       +Y  +++   K G+   A   FR++ + G  P+  TY+ +I+ L
Sbjct: 213 ELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSL 272

Query: 218 VNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG- 276
               +++ AL++FS +    I      Y  L++G     R+ EA ++LNEM      P  
Sbjct: 273 CKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNI 332

Query: 277 RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAY 336
               + +    + G +  A   L+ M       NV  Y               S +   Y
Sbjct: 333 VTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTY---------------SSLMNGY 377

Query: 337 GVQLKPWLDPKALANTL--DEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFC 394
            +Q +  ++ + L + +      P+V S      +       CK     K    A   F 
Sbjct: 378 SLQAE-VVEARKLFDVMITKGCKPDVFS------YNILINGYCKA----KRIGEAKQLFN 426

Query: 395 WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS 454
            + +Q G T D+ +   ++  L + G +     L   + ++G      T  +++D  G  
Sbjct: 427 EMIHQ-GLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLD--GFC 483

Query: 455 KKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
           K+   A KAF   R +     K   M++Y+ L+  + K +   +A  +  E+   G+ P+
Sbjct: 484 KQGYLA-KAFRLFRAMQSTYLKPN-MVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPN 541

Query: 515 VQTFSGLMYHFALQG--DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY 563
           VQ ++ ++     +G  DE +  + F  + ++G  P+ + + V+I+ + ++
Sbjct: 542 VQIYTTIINGLCKEGLLDEAL--EAFRNMEEDGCPPNEFSYNVIIRGFLQH 590



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 12/125 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ +S L+    K    F+A  VL+ M   G+ P+V T+S LM  ++LQ +    +KLF 
Sbjct: 332 IVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFD 391

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEG 587
           ++   G +PD + + +LI  YCK             + +  L PD  +   L   L + G
Sbjct: 392 VMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLG 451

Query: 588 RRKEA 592
           R +EA
Sbjct: 452 RLREA 456



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 91/209 (43%), Gaps = 20/209 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G + D Y L  ++    +   V+L   ++AK+   G++L   T   +I+      K   A
Sbjct: 152 GLSPDTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQA 211

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           ++ F DD    G          Y++++  L K      A  +  +M  +G  PDV T+S 
Sbjct: 212 VELF-DDMVARGYQPDVH---TYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYST 267

Query: 521 LMYHFALQGDEKIVQKL--FSMVRQNGVEPDAYMFKVLIQAYCKY------------LSN 566
           ++   +L  D ++ + L  FS ++  G+ P+ + +  LIQ  C +            + +
Sbjct: 268 IID--SLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMS 325

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEAAAV 595
            N+MP+  T  LL     KEG   EA  V
Sbjct: 326 LNIMPNIVTFSLLINIFCKEGNVFEARGV 354



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 85/458 (18%), Positives = 173/458 (37%), Gaps = 49/458 (10%)

Query: 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF-RQVIDEGAIPNSRTY 210
           +++  L+ +N    R        +N ++S   K     +AV +  +Q+   G  P++ T 
Sbjct: 101 NIDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTL 160

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
            ++I     L ++D    V + +  + ++ T   +  L+ G   V +F +A  L ++M  
Sbjct: 161 HMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVA 220

Query: 271 DGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNN 329
            G  P        +  + ++G    A    R+M            E G   D        
Sbjct: 221 RGYQPDVHTYTTIINGLCKIGETVAAAGLFRKM-----------GEAGCQPDV------- 262

Query: 330 SGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPE 387
               + Y   +      + +   LD +S      ++   F + + +  +C   R ++   
Sbjct: 263 ----VTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSR-WREAS 317

Query: 388 TAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLI 447
              +    +   P    ++     ++ I  + G+V     ++  +   G+     T   +
Sbjct: 318 AMLNEMMSLNIMP----NIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSL 373

Query: 448 IDFYGISKKADAALKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
           ++ Y +  +   A K F    T  C P      +  Y+ L+    K KR  +A  +  EM
Sbjct: 374 MNGYSLQAEVVEARKLFDVMITKGCKPD-----VFSYNILINGYCKAKRIGEAKQLFNEM 428

Query: 507 IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--YL 564
           I  G+ PD+ +++ L+      G  +    LF  +  NG  PD   + +L+  +CK  YL
Sbjct: 429 IHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYL 488

Query: 565 S----------NSNLMPDAATKELLKKSLWKEGRRKEA 592
           +          ++ L P+     +L  ++ K    KEA
Sbjct: 489 AKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEA 526



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/141 (21%), Positives = 64/141 (45%), Gaps = 12/141 (8%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ +++L+  L K  +   A+ + ++M+  G  PDV T++ ++      G+      LF 
Sbjct: 192 IVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFR 251

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEG 587
            + + G +PD   +  +I + CK            Y+    + P+  T   L + L    
Sbjct: 252 KMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFS 311

Query: 588 RRKEAAAVEERCEKINDVPSL 608
           R +EA+A+      +N +P++
Sbjct: 312 RWREASAMLNEMMSLNIMPNI 332



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 47/98 (47%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YNI++    K+    EA + F ++  +G  PN + YT +I  L   G LD ALE F  + 
Sbjct: 510 YNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNME 569

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
                     Y +++ GF+  +    A  L+ EMR+ G
Sbjct: 570 EDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMREKG 607



 Score = 42.4 bits (98), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 71/185 (38%), Gaps = 4/185 (2%)

Query: 113 AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
            K++R  E K L  ++         V++  L+      G L      +        L   
Sbjct: 413 CKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDL 472

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            +Y+I++  + K G   +A   FR +      PN   Y ++I+ +     L  A ++FS 
Sbjct: 473 CTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSE 532

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFI 292
           L +  ++   + Y  ++ G       DEA      M +DG  P       + R    GF+
Sbjct: 533 LFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIR----GFL 588

Query: 293 QGANE 297
           Q  +E
Sbjct: 589 QHKDE 593


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 165/417 (39%), Gaps = 26/417 (6%)

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
           L+L    ++E      +L+  + +         GK  +A    R++I +G IP++ TY+ 
Sbjct: 388 LDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSK 447

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           ++ +L N  K++ A  +F  +    +      Y I+V+ F      ++A+   NEMR+ G
Sbjct: 448 VLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVG 507

Query: 273 KFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYE---DGSDDDEDENDDN 328
             P      AL     +   +  ANE    ML +  + N+  Y    DG           
Sbjct: 508 CTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKAC 567

Query: 329 NSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSL--LADAKFVWTTRLVCKVLRHFKSP 386
               R+  G +  P +D        +   P VV+   L D          CK  R     
Sbjct: 568 QIFERMC-GSKDVPDVDMYFKQYDDNSERPNVVTYGALLDG--------FCKSHR----V 614

Query: 387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
           E A      ++ + G   +    + ++  L + G ++    +  ++   G      T   
Sbjct: 615 EEARKLLDAMSME-GCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSS 673

Query: 447 IIDFYGISKKADAALKAFHDD-RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEE 505
           +ID Y   K+ D A K         C P      +++Y+ ++  L K  +  +A  +++ 
Sbjct: 674 LIDRYFKVKRQDLASKVLSKMLENSCAPN-----VVIYTEMIDGLCKVGKTDEAYKLMQM 728

Query: 506 MIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           M   G  P+V T++ ++  F + G  +   +L   +   GV P+   ++VLI   CK
Sbjct: 729 MEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCK 785



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 86/204 (42%), Gaps = 7/204 (3%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           LLD F  +H +  A     A+S ME  + N      Q    AL   L K  +  E + + 
Sbjct: 604 LLDGFCKSHRVEEARKLLDAMS-MEGCEPN------QIVYDALIDGLCKVGKLDEAQEVK 656

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
            ++S   F      + +L+  Y      +L     ++  + +   +   Y  ++    K 
Sbjct: 657 TEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKV 716

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
           GK  EA +  + + ++G  PN  TYT MI+    +GK+++ LE+   +    +      Y
Sbjct: 717 GKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTY 776

Query: 246 LILVEGFVGVERFDEAKSLLNEMR 269
            +L++        D A +LL EM+
Sbjct: 777 RVLIDHCCKNGALDVAHNLLEEMK 800



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 80/203 (39%), Gaps = 1/203 (0%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T  AL     KS R  E + L+  +S        + +  L+      G L+      
Sbjct: 597 NVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 656

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            E  +     +  +Y+ ++  Y K  +   A +   ++++    PN   YT MI+ L  +
Sbjct: 657 TEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKV 716

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM- 279
           GK D A ++   +     +     Y  +++GF  + + +    LL  M   G  P     
Sbjct: 717 GKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTY 776

Query: 280 RVALERMQEMGFIQGANEFLREM 302
           RV ++   + G +  A+  L EM
Sbjct: 777 RVLIDHCCKNGALDVAHNLLEEM 799



 Score = 46.2 bits (108), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 12/138 (8%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS +L  L    +   A  + EEM   G+V DV T++ ++  F   G  +  +K F+ +R
Sbjct: 445 YSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMR 504

Query: 543 QNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRK 590
           + G  P+   +  LI AY K             + +   +P+  T   L     K G+ +
Sbjct: 505 EVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVE 564

Query: 591 EAAAVEERCEKINDVPSL 608
           +A  + ER     DVP +
Sbjct: 565 KACQIFERMCGSKDVPDV 582



 Score = 45.4 bits (106), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 64/128 (50%), Gaps = 11/128 (8%)

Query: 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID----EGAIPNS 207
           D+++    +++  +R  +++   Y  ++  + K+ +    VE  R+++D    EG  PN 
Sbjct: 581 DVDMYFKQYDDNSERPNVVT---YGALLDGFCKSHR----VEEARKLLDAMSMEGCEPNQ 633

Query: 208 RTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNE 267
             Y  +I+ L  +GKLD A EV + +       T   Y  L++ +  V+R D A  +L++
Sbjct: 634 IVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSK 693

Query: 268 MRDDGKFP 275
           M ++   P
Sbjct: 694 MLENSCAP 701



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 92/517 (17%), Positives = 189/517 (36%), Gaps = 58/517 (11%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N+  + +    L  + +  +  ++I ++    F+  +  +  ++ +   +  +EL    +
Sbjct: 406 NKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLF 465

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            E ++   +    +Y I++  + K G   +A + F ++ + G  PN  TYT +I   +  
Sbjct: 466 EEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKA 525

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR 280
            K+  A E+F  +           Y  L++G     + ++A  +   M      P   M 
Sbjct: 526 KKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMY 585

Query: 281 V-ALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED-----GSDDDEDENDDNNSGV-- 332
               +   E   +      L       R++  R   D     G + ++   D    G+  
Sbjct: 586 FKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCK 645

Query: 333 --RIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW 390
             ++    ++K  +       TL  +S  +       +    ++++ K+L +  +P    
Sbjct: 646 VGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVI 705

Query: 391 HF-----FCWV-----AY-------QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
           +       C V     AY       + G   +V     M+      G +E    L+ ++ 
Sbjct: 706 YTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMG 765

Query: 434 SDGMRLPFSTIRLIIDFY--------------------------GISKKADAALKAFHDD 467
           S G+   + T R++ID                            G  K  +   K F + 
Sbjct: 766 SKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIES 825

Query: 468 RTLCGPISK---FKLMLLYSSLLRTLTKCKRDFDAINVLEEM-IFSGIVPDV-QTFSGLM 522
             L   I +      + +Y  L+  L K +R   A+ +LEE+  FS  + D   T++ L+
Sbjct: 826 LGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLI 885

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
               L    +   +LFS + + GV P+   F  LI+ 
Sbjct: 886 ESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKG 922



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 86/225 (38%), Gaps = 34/225 (15%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G+  D     K+L  L     +EL   L  +++  G+     T  +++D +  +   + A
Sbjct: 437 GFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQA 496

Query: 461 LKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
            K F++ R + C P      ++ Y++L+    K K+   A  + E M+  G +P++ T+S
Sbjct: 497 RKWFNEMREVGCTPN-----VVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYS 551

Query: 520 GLMYHFALQGD-EKIVQKL---------------FSMVRQNGVEPDAYMFKVLIQAYCK- 562
            L+      G  EK  Q                 F     N   P+   +  L+  +CK 
Sbjct: 552 ALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKS 611

Query: 563 -----------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVE 596
                       +S     P+    + L   L K G+  EA  V+
Sbjct: 612 HRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 656


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 87/409 (21%), Positives = 160/409 (39%), Gaps = 47/409 (11%)

Query: 165 QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
           ++  L +T +Y  ++    K G+  EA+    Q++++G  P  +TYTV+I+ L   G+++
Sbjct: 104 EKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVE 163

Query: 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALE 284
            A  +F  +     +  +  Y  L+ G   + + DEA   LN+M ++G   G    V + 
Sbjct: 164 EARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIH 223

Query: 285 RMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWL 344
                      N  +R++     +++   Y D  DD  D                     
Sbjct: 224 -----------NLVIRQLCASGNLEDALAYFDELDDSLDLTHFT---------------F 257

Query: 345 DPKALANTLDEWSPEVVSLLADAK--------FVWTTRLVCKVLRHFKSPETAWHFFCWV 396
           +P   A    E + E ++ +            F +T+ LV   L+  +  E         
Sbjct: 258 NPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTS-LVDGFLKLGRLDEALLQL--KE 314

Query: 397 AYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK- 455
           A + G+  D      ++  L + G VE       ++R+ G      T   +ID +  +K 
Sbjct: 315 AVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKM 374

Query: 456 --KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP 513
             KA    +      T+   ++       Y+ +L  L K  R  +A      M   G V 
Sbjct: 375 IPKAHRVYRQMLQSGTVVSTVT-------YNIILDGLCKAGRVAEAYATFLAMEERGCVA 427

Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            V T+S LM  F  +G+     +LF  +   G EP+   + ++I+  C+
Sbjct: 428 TVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCR 476



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 76/160 (47%), Gaps = 7/160 (4%)

Query: 71  IVTHALRSAPNADSALSIME-ALKSN--PNFSHNQSTLHALATVLAKSQRNHELKTLIGD 127
           +V + L      D A S++E A+++   P++     T +     L K++R  +   L+  
Sbjct: 46  VVINGLCREKRLDEAFSVLERAVRAGCEPDYV----TYNVFIDGLCKAERVDDAFQLLKK 101

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           +   K L  +V +  L+     +G L+  ++   +  ++    + ++Y +V+   +K G+
Sbjct: 102 MDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGR 161

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227
             EA   F  ++  G  P++  YT +I  L  +GKLD AL
Sbjct: 162 VEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEAL 201



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/251 (19%), Positives = 92/251 (36%), Gaps = 42/251 (16%)

Query: 65  RLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNH 119
           R ++P +V H      L ++ N + AL+  + L  + + +H   T + L   L K++R  
Sbjct: 214 RGVEPDVVIHNLVIRQLCASGNLEDALAYFDELDDSLDLTH--FTFNPLVAALCKAERTE 271

Query: 120 ELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM 179
           E    +  +S  +       + +L+  +   G L+  L    E  +R  +    +Y  ++
Sbjct: 272 EAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSII 331

Query: 180 SVYAKTGKNFEAVETF-----------------------------------RQVIDEGAI 204
               K G+  E  E F                                   RQ++  G +
Sbjct: 332 DGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTV 391

Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL 264
            ++ TY ++++ L   G++  A   F A+       T   Y  L++GF        A  L
Sbjct: 392 VSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVEL 451

Query: 265 LNEMRDDGKFP 275
              M D G  P
Sbjct: 452 FRRMLDRGCEP 462



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++ +V++   +  +  EA     + +  G  P+  TY V I+ L    ++D A ++   +
Sbjct: 43  AFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKM 102

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFI 292
              +   T+  Y  LV+G +   R DEA ++L +M + G  P  +   V ++ + + G +
Sbjct: 103 DEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRV 162

Query: 293 QGANEFLREML 303
           + A     +ML
Sbjct: 163 EEARRIFVDML 173



 Score = 46.6 bits (109), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 48/236 (20%), Positives = 99/236 (41%), Gaps = 22/236 (9%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           D+ A   ++  L R   ++    ++ +    G    + T  + ID    +++ D A +  
Sbjct: 40  DMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLL 99

Query: 465 HD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
              D   C P +     + Y++L+  L K  R  +A+ +LE+M+  G  P ++T++ ++ 
Sbjct: 100 KKMDEKKCLPTT-----VTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVID 154

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK---------YLSN-------S 567
             +  G  +  +++F  +  NG  PDA+++  LI    K         YL+         
Sbjct: 155 GLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCAR 214

Query: 568 NLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAVSSADLT 623
            + PD     L+ + L   G  ++A A  +  +   D+        + A+  A+ T
Sbjct: 215 GVEPDVVIHNLVIRQLCASGNLEDALAYFDELDDSLDLTHFTFNPLVAALCKAERT 270



 Score = 46.6 bits (109), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 65/324 (20%), Positives = 125/324 (38%), Gaps = 47/324 (14%)

Query: 36  YLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIME 90
           Y+     ID +  A R + +  L   ++++   P  VT+      L  A   D A++I+E
Sbjct: 76  YVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILE 135

Query: 91  ALKSNPNFSHNQSTLHALATVLAKSQRNHELK-------------------TLIGDISSS 131
            +    N S    T   +   L+K+ R  E +                    LI  ++  
Sbjct: 136 QMVEKGN-SPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKI 194

Query: 132 KFLNVSVNFMNLM--------------------QWYSTSGDLELVLSTWNEYRQRAKLLS 171
             L+ ++ ++N M                    +    SG+LE  L+ ++E      L +
Sbjct: 195 GKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDELDDSLDL-T 253

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
             ++N +++   K  +  EA+   +++ +    P   TYT +++  + LG+LD AL    
Sbjct: 254 HFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLK 313

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMG 290
                     +  Y  +++G   + R +E     +EMR+ G  P      AL +   +  
Sbjct: 314 EAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAK 373

Query: 291 FIQGANEFLREMLPDKRIKNVRYY 314
            I  A+   R+ML    + +   Y
Sbjct: 374 MIPKAHRVYRQMLQSGTVVSTVTY 397



 Score = 46.2 bits (108), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 46/97 (47%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           +V +  ++     +G +    +T+    +R  + +  +Y+ +M  +   G    AVE FR
Sbjct: 394 TVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFR 453

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +++D G  PN  +Y ++I  L   GKL  A   F  L
Sbjct: 454 RMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKL 490



 Score = 43.5 bits (101), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 16/138 (11%)

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
           F  +  Y+SL+    K  R  +A+  L+E +  G +PD  T++ ++      G  +   +
Sbjct: 286 FPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCE 345

Query: 537 LFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLW 584
            F  +R  G EPDA  +  LI  + K             +  S  +    T  ++   L 
Sbjct: 346 RFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLC 405

Query: 585 KEGRRKEA----AAVEER 598
           K GR  EA     A+EER
Sbjct: 406 KAGRVAEAYATFLAMEER 423


>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
          Length = 987

 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 103/456 (22%), Positives = 184/456 (40%), Gaps = 42/456 (9%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L K  R H+ + L+ ++     +     +  ++  Y  SG ++  L       Q      
Sbjct: 294 LCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPD 353

Query: 172 TESYNIVMSVYAKTGKNF-EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
             +YN +  +Y   G    EA E     I  G  P   T+T +I       ++D AL V 
Sbjct: 354 DWTYNSL--IYGLCGGKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVK 411

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEM 289
           S +     K   + Y +L+   +   R  EAK  LNEM  +G  P   +  ++ +   ++
Sbjct: 412 SNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKV 471

Query: 290 GFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYG-VQLKPWLDPKA 348
           G +  A E  + M  +    N   Y  GS               + YG +Q K      A
Sbjct: 472 GMVGAALEVFKLMEHEGCHPNAWTY--GS---------------LIYGLIQDKKLHKAMA 514

Query: 349 LANTLDE--WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDV 406
           L   + E   +P V++        +TT +  +  +H    + A+  F  +  + G T D 
Sbjct: 515 LITKMQEDGITPGVIA--------YTTLIQGQCKKH--EFDNAFRLF-EMMEKNGLTPDE 563

Query: 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD 466
            A   +   L + G  E     + +    G+ L   T   ++D  G SK  +    A   
Sbjct: 564 QAYNVLTDALCKSGRAEEAYSFLVR---KGVVLTKVTYTSLVD--GFSKAGNTDFAAVLI 618

Query: 467 DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
           ++ +     K  L   YS LL+ L K K+  +A+++L++M  SG+  ++  ++ ++    
Sbjct: 619 EKMV-NEGCKADL-YTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMI 676

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            +G     + LF+ +  +G +P A  + V I +YCK
Sbjct: 677 KEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCK 712



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 85/190 (44%), Gaps = 5/190 (2%)

Query: 87  SIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQW 146
           ++ME    NP+     S ++ L        +  E + L+    +  F    + F NL+  
Sbjct: 343 ALMEQNGCNPDDWTYNSLIYGLC-----GGKLDEAEELLNGAIARGFTPTVITFTNLING 397

Query: 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206
           Y  +  ++  L   +        L  ++Y ++++V  K  +  EA ET  ++   G  PN
Sbjct: 398 YCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPN 457

Query: 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
              YT +I+    +G + +ALEVF  +        +  Y  L+ G +  ++  +A +L+ 
Sbjct: 458 VVIYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALIT 517

Query: 267 EMRDDGKFPG 276
           +M++DG  PG
Sbjct: 518 KMQEDGITPG 527



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 82/184 (44%), Gaps = 30/184 (16%)

Query: 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR 445
           P TA  FF WVA +PG+ H   +   +L +LAR       D+L+  +             
Sbjct: 66  PATALAFFEWVARRPGFRHTAASHAALLQLLARRRAPANYDKLVLSM------------- 112

Query: 446 LIIDFYGISKKADAALKAFHDDRTLCGPISKFKLML---LYSSLLRTLTKCKRDFDAINV 502
             I   G ++    A+ A    R + G     +L+L    Y+  LR+L +    FD    
Sbjct: 113 --ISCSGTAEDVREAVDAIQAIRRVGGK----RLVLSPKCYNLALRSLLR----FDMTEY 162

Query: 503 L----EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           +      ++  G++PD  T++ ++  +  +G   I  + F ++R++G++ D Y    L+ 
Sbjct: 163 MGKLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLL 222

Query: 559 AYCK 562
            YC+
Sbjct: 223 GYCR 226



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/222 (20%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D+A  + E ++ N   + ++   + L   L KS R  E  + +        +   V + +
Sbjct: 545 DNAFRLFEMMEKN-GLTPDEQAYNVLTDALCKSGRAEEAYSFL---VRKGVVLTKVTYTS 600

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  +S +G+ +       +           +Y++++    K  K  EA+    Q+   G
Sbjct: 601 LVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSG 660

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
              N   YT++I  ++  GK D A  +F+ +     K ++  Y + +  +  + + +EA+
Sbjct: 661 VKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAE 720

Query: 263 SLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREML 303
            L+ EM  DG  P      + +     MG++  A   L+ M+
Sbjct: 721 HLIGEMERDGVTPDVVTYHIFINGCGHMGYMDRAFSTLKRMV 762



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 110/525 (20%), Positives = 193/525 (36%), Gaps = 63/525 (12%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAK--SQRNHELKTLIGDISSSKFLNVSVNFM 141
           +AL+  E +   P F H  ++  AL  +LA+  +  N++ K ++  IS S         +
Sbjct: 68  TALAFFEWVARRPGFRHTAASHAALLQLLARRRAPANYD-KLVLSMISCSGTAEDVREAV 126

Query: 142 NLMQWYSTSGDLELVLST----------------------WNEYRQRAKLLSTESYNIVM 179
           + +Q     G   LVLS                       ++   Q   L  T +YN ++
Sbjct: 127 DAIQAIRRVGGKRLVLSPKCYNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTYNTMI 186

Query: 180 SVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIK 239
             Y K G    A   F  + + G   ++ T   ++        L  A  +   +PLM  +
Sbjct: 187 MAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCR 246

Query: 240 RTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEF 298
           R    Y IL++G        EA  L+  M  DG      M   L + + + G I  A   
Sbjct: 247 RNEYSYTILIQGLYEARCVREALVLVFMMVQDGCSLNLHMYTLLIKGLCKEGRIHDARGL 306

Query: 299 LREMLPDKRIKNVRYYEDGSD------------------DDEDENDDNNSGVRIAYGVQL 340
           L EM     + +V  Y    D                  +    N D+ +   + YG+  
Sbjct: 307 LDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCG 366

Query: 341 KPWLDPKALAN--TLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAY 398
               + + L N      ++P V++      F       CK  R   +     +       
Sbjct: 367 GKLDEAEELLNGAIARGFTPTVIT------FTNLINGYCKAERIDDALRVKSNMI----- 415

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
                 D+ A   ++ +L +   ++     + ++ ++G+         IID Y       
Sbjct: 416 SSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGMVG 475

Query: 459 AALKAFH-DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
           AAL+ F   +   C P +       Y SL+  L + K+   A+ ++ +M   GI P V  
Sbjct: 476 AALEVFKLMEHEGCHPNA-----WTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVIA 530

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           ++ L+     + +     +LF M+ +NG+ PD   + VL  A CK
Sbjct: 531 YTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCK 575



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 1/152 (0%)

Query: 165 QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
           ++  +L+  +Y  ++  ++K G    A     ++++EG   +  TY+V+++ L    KL+
Sbjct: 588 RKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLN 647

Query: 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVAL 283
            AL +   + +  +K     Y I++   +   + D AKSL NEM   G  P      V +
Sbjct: 648 EALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFI 707

Query: 284 ERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
               ++G I+ A   + EM  D    +V  Y 
Sbjct: 708 SSYCKIGQIEEAEHLIGEMERDGVTPDVVTYH 739



 Score = 46.6 bits (109), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 16/127 (12%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI--VQKL 537
           +++Y+S++    K      A+ V + M   G  P+  T+  L+Y   L  D+K+     L
Sbjct: 458 VVIYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIY--GLIQDKKLHKAMAL 515

Query: 538 FSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWK 585
            + ++++G+ P    +  LIQ  CK             +  + L PD     +L  +L K
Sbjct: 516 ITKMQEDGITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCK 575

Query: 586 EGRRKEA 592
            GR +EA
Sbjct: 576 SGRAEEA 582



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 45/102 (44%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y I++S   K GK+  A   F ++I  G  P++ TYTV I     +G+++ A  +   +
Sbjct: 667 AYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEM 726

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               +      Y I + G   +   D A S L  M D    P
Sbjct: 727 ERDGVTPDVVTYHIFINGCGHMGYMDRAFSTLKRMVDASCEP 768



 Score = 40.4 bits (93), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 42/214 (19%), Positives = 87/214 (40%), Gaps = 17/214 (7%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           ++  AL      + ALSI++ +  +     N      + + + K  ++   K+L  ++ S
Sbjct: 635 VLLQALCKQKKLNEALSILDQMTVS-GVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMIS 693

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           S     +  +   +  Y   G +E       E  +        +Y+I ++     G    
Sbjct: 694 SGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGCGHMGYMDR 753

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEH-----LVNLGKLDSA-----LEVFSALPLMR--- 237
           A  T ++++D    PN  TY ++++H     L+N   +D++     +E+ +   L+    
Sbjct: 754 AFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYIDTSGMWNWIELNTVWQLLERMM 813

Query: 238 ---IKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
              +  T   Y  ++ GF    R +EA  LL+ M
Sbjct: 814 KHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHM 847



 Score = 40.0 bits (92), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 71/175 (40%), Gaps = 1/175 (0%)

Query: 79  APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV 138
           A N D A  ++E +  N     +  T   L   L K ++ +E  +++  ++ S      V
Sbjct: 608 AGNTDFAAVLIEKM-VNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIV 666

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
            +  ++      G  +   S +NE        S  +Y + +S Y K G+  EA     ++
Sbjct: 667 AYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEM 726

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
             +G  P+  TY + I    ++G +D A      +     +     Y +L++ F+
Sbjct: 727 ERDGVTPDVVTYHIFINGCGHMGYMDRAFSTLKRMVDASCEPNCWTYWLLLKHFL 781


>gi|297734042|emb|CBI15289.3| unnamed protein product [Vitis vinifera]
          Length = 793

 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 109/272 (40%), Gaps = 22/272 (8%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
           W P     L +   +       +VL+  +    A  FF W+  Q G+ HD +    M+ I
Sbjct: 338 WGPAAEEALRNLNCLMDAYQANQVLKQIQDHPVALGFFYWLKRQTGFKHDGHTYTTMVGI 397

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR---TLCG 472
           L R      +++L+A++  DG +    T   +I  YG +   + A+  F  DR     C 
Sbjct: 398 LGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVF--DRMQEAGCQ 455

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
           P       + Y +L+    K      A+++ ++M  + + PD  T+S ++      G   
Sbjct: 456 PDR-----VTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLT 510

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLK 580
              KLF  +   G  P+   + ++I    K             + N+   PD  T  ++ 
Sbjct: 511 SAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVM 570

Query: 581 KSLWKEGRRKEAAAVEERCEKINDVPSLALRG 612
           + L   G  +EA A+    ++ N VP   + G
Sbjct: 571 EVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYG 602



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/282 (18%), Positives = 116/282 (41%), Gaps = 36/282 (12%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           L+D +     L+   +   AL     LK    F H+  T   +  +L ++++   +  L+
Sbjct: 352 LMDAYQANQVLKQIQDHPVALGFFYWLKRQTGFKHDGHTYTTMVGILGRARQFGAINKLL 411

Query: 126 GDI-------------------SSSKFLNVSVNFMNLMQ----------------WYSTS 150
            ++                     + +LN +V+  + MQ                 ++ +
Sbjct: 412 AEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVFDRMQEAGCQPDRVTYCTLIDIHAKA 471

Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
           G L++ L  + + ++      T +Y+++++   K G    A + F +++D+G +PN  TY
Sbjct: 472 GFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTY 531

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
            +MI          +ALE++  +     +     Y I++E        +EA+++  EM+ 
Sbjct: 532 NIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKR 591

Query: 271 DGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNV 311
               P   +  + ++   ++G ++ + E+ + ML      NV
Sbjct: 592 KNWVPDEPVYGLLVDLWGKVGNVEKSWEWYQAMLNAGLCPNV 633


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 93/451 (20%), Positives = 173/451 (38%), Gaps = 42/451 (9%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+      G +   LS  ++   R       +YNI++    K     +A+E    +  EG
Sbjct: 173 LIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEG 232

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             PN+ TY V+++ +   G +D ALE+   LP    K ++  Y  +++G    ER+ +A 
Sbjct: 233 CTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDAD 292

Query: 263 SLLNEMRDDGKFPGRA-MRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDD- 320
            L+ EM  +   P  A   V +  +   G +Q A + L +M       N+  Y    +  
Sbjct: 293 ELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGL 352

Query: 321 DEDENDDNNSGV---RIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVC 377
            E  N D   G+     +YG +                  P++V+      +    + +C
Sbjct: 353 CEQRNVDGAMGLLSKMKSYGCK------------------PDIVT------YNTLLKGLC 388

Query: 378 KVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM 437
              +   + E   +       Q G   D      ++  L + G +     +  ++   G 
Sbjct: 389 SAAQWVDAEELMDNMT-----QNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGC 443

Query: 438 RLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDF 497
                T   II     + K D AL+ F++          F    +Y  L   L       
Sbjct: 444 TPNSITYSTIISGLAKATKLDQALELFNEMGH-----KGFNPDKIYQLLAECLNDDDTIE 498

Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           +AI  + ++  SGI P    ++ ++      G  +    + + +  +G  PD   + +LI
Sbjct: 499 EAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILI 558

Query: 558 Q--AYCKYLSNS-NLMPDAATKELLKKSLWK 585
           +  AY  YL+ +  L+    ++++L  SL K
Sbjct: 559 EGLAYEGYLNEARELLIKLCSRDVLVNSLIK 589



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 65/157 (41%), Gaps = 10/157 (6%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           D     +++  L R G  +  +R++      G   P +T+      YG            
Sbjct: 102 DAALANRLVRDLCRRGRPDDAERVV------GACGPAATVV----AYGALTDGYCRAGRL 151

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
            D R + G +        Y+ L+ TL +  +  DA++VL++M+  G  PDV T++ L+  
Sbjct: 152 GDARRVVGGMPVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEA 211

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
                  +   +L  ++R  G  P+   + VL+   C
Sbjct: 212 TCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMC 248



 Score = 43.5 bits (101), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 50/240 (20%), Positives = 88/240 (36%), Gaps = 9/240 (3%)

Query: 36  YLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSN 95
           Y R  +L D+ R+         +    N    +P I  H L        ALS+++ +   
Sbjct: 145 YCRAGRLGDARRVV------GGMPVQPNAYTYNPLI--HTLCERGQVRDALSVLDDMLCR 196

Query: 96  PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLEL 155
              + +  T + L     K +   +   LI  + +      +V +  LM      GD++ 
Sbjct: 197 -GCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDD 255

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
            L             ST +YN V+       +  +A E   +++ E   PN  T+ V+I 
Sbjct: 256 ALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIY 315

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            L   G L  A+++   +           Y  ++ G       D A  LL++M+  G  P
Sbjct: 316 SLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKP 375



 Score = 38.9 bits (89), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 27/129 (20%), Positives = 57/129 (44%), Gaps = 1/129 (0%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           S+ +  ++   + +  L+  L  +NE   +      + Y ++           EA++T R
Sbjct: 447 SITYSTIISGLAKATKLDQALELFNEMGHKG-FNPDKIYQLLAECLNDDDTIEEAIQTVR 505

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           ++ D G  P++  Y  ++  L   GK + A+++ + +           Y+IL+EG     
Sbjct: 506 KLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEG 565

Query: 257 RFDEAKSLL 265
             +EA+ LL
Sbjct: 566 YLNEARELL 574


>gi|224083253|ref|XP_002306972.1| predicted protein [Populus trichocarpa]
 gi|222856421|gb|EEE93968.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 103/507 (20%), Positives = 178/507 (35%), Gaps = 102/507 (20%)

Query: 121 LKTLIGDISSSKFLNVSVNFMN-LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM 179
           L+ L  +I   K L + V   N ++  ++ +GDL   L      +     + T +   V+
Sbjct: 254 LQKLYREIECDK-LELDVQLSNDIIVGFAKAGDLSKALEFLGVVQGSGLSVKTATLVAVI 312

Query: 180 SVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIK 239
                 G+  EA   F ++ D G  P +R Y  ++   V  G L  A  V S +    + 
Sbjct: 313 WALGNCGRTVEAEAIFEEMRDNGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEMERSGVS 372

Query: 240 RTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEF 298
              + Y  L++ +    R++ A+ +L EM      P        L   ++ G  Q + + 
Sbjct: 373 PNEQTYSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFSRILSSYRDKGEWQKSFQV 432

Query: 299 LREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGV---RIAYGVQLKPWLDPKALANTLDE 355
           LREM                          NSGV   R+ Y V +  +     L + +  
Sbjct: 433 LREM-------------------------ENSGVRPDRVFYNVMIDTFGKFNCLDHAMAT 467

Query: 356 WSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKML 413
           +   +   +      W T +   C+  +H ++ E           + GY+        M+
Sbjct: 468 FDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFEEMM-----EGGYSPCNTTFNIMI 522

Query: 414 TILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGP 473
                    + V  L+A +RS G+     T   +ID YG                     
Sbjct: 523 NSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYG--------------------- 561

Query: 474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
                             K  R  DAI  L++M  +G+ P    ++ L+  +A +G  + 
Sbjct: 562 ------------------KSGRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQ 603

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAY------------CKYLSNSNLMPDAATKELLKK 581
               F  +R +G++P       LI A+             +Y+  ++L PD  T   L K
Sbjct: 604 AVSAFRAMRVDGLKPSLLALNSLINAFGEDRRDAEAFTVLQYMKENDLKPDVVTYTTLMK 663

Query: 582 SLWKEGRRKEAAAVEERCEKINDVPSL 608
           +L              R EK + VPS+
Sbjct: 664 ALI-------------RVEKFDKVPSV 677



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 85/191 (44%), Gaps = 8/191 (4%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
            +S   +T + +       +R  ++K L+  + S   +  SV +  L+  Y  SG     
Sbjct: 510 GYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSGRFNDA 569

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           +   ++ +      S+  YN +++ YA+ G + +AV  FR +  +G  P+     + +  
Sbjct: 570 IECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAFRAMRVDGLKPS----LLALNS 625

Query: 217 LVN-LGKLDSALEVFSALPLMR---IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           L+N  G+     E F+ L  M+   +K     Y  L++  + VE+FD+  S+  EM   G
Sbjct: 626 LINAFGEDRRDAEAFTVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPSVYEEMILSG 685

Query: 273 KFPGRAMRVAL 283
             P R  R  L
Sbjct: 686 CTPDRKARAML 696



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 74/177 (41%)

Query: 99  SHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLS 158
           S N+ T   L      + R    + ++ ++ +S     +  F  ++  Y   G+ +    
Sbjct: 372 SPNEQTYSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFSRILSSYRDKGEWQKSFQ 431

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
              E            YN+++  + K      A+ TF +++ EG  P++ T+  +I+   
Sbjct: 432 VLREMENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHC 491

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             GK D A E+F  +        +  + I++  F   ER+D+ K+LL  MR  G  P
Sbjct: 492 RAGKHDRAEELFEEMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVP 548



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 18/189 (9%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVE--LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK 456
           Q GY  D      ++  L R   V+  ++ +L  ++  D + L       II   G +K 
Sbjct: 226 QDGYPSDFVNYSLIIRSLMRKNRVDSAILQKLYREIECDKLELDVQLSNDII--VGFAKA 283

Query: 457 ADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
            D + KA      + G     K   L + ++  L  C R  +A  + EEM  +G+ P  +
Sbjct: 284 GDLS-KALEFLGVVQGSGLSVKTATLVA-VIWALGNCGRTVEAEAIFEEMRDNGLKPRTR 341

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY------------CKYL 564
            ++ L+  +   G  K  + + S + ++GV P+   +  LI AY             K +
Sbjct: 342 AYNALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTYSFLIDAYGNAGRWESARIVLKEM 401

Query: 565 SNSNLMPDA 573
             SN+ P+A
Sbjct: 402 EASNVQPNA 410


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 105/547 (19%), Positives = 197/547 (36%), Gaps = 70/547 (12%)

Query: 80  PNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
           P A +  + M+   + PN    + T + L     K  + H    L+ ++  S      V 
Sbjct: 24  PEATTYFAKMKKKGTVPN----EWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVT 79

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  ++  +     ++     + +  +   + +  +YN ++S   + G   EA E   ++ 
Sbjct: 80  YSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMR 139

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           + G  P+  +Y  ++  L   GK+D AL+VF              Y  L+ G     R D
Sbjct: 140 ERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLD 199

Query: 260 EAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGS 318
           EA  L  +MR++   P      AL + + +   +Q A + L  M                
Sbjct: 200 EACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETM---------------- 243

Query: 319 DDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCK 378
              ED N   N    I Y   +        L  T           + DA+ V+   +V  
Sbjct: 244 ---EDRNCTPNV---ITYSSLI------DGLCKT---------GQVRDAQEVFKRMIVRG 282

Query: 379 VLRHFKSPETAWHFFCWV------------AYQPGYTHDVYALEKMLTILARHGHVELVD 426
           +  +  +  +  H FC                  G   D+     ++  L + G     +
Sbjct: 283 IEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEAN 342

Query: 427 RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSL 486
           RL   +++        T   +I  +   ++ D A   F D        +    ++ +S+L
Sbjct: 343 RLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQ----AVLPDVVTFSTL 398

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           +          DA  +LEEM+ S   PDV T++ L+  F   G     +++   + + G 
Sbjct: 399 VEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGC 458

Query: 547 EPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAA 594
           +P+   +  LI A+C+             +  + + P+  T   L       G  +EA  
Sbjct: 459 QPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARK 518

Query: 595 VEERCEK 601
           + ER E+
Sbjct: 519 MLERLER 525



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 94/453 (20%), Positives = 176/453 (38%), Gaps = 48/453 (10%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+     +G ++      +E R+R       SY+ +M+   KTGK   A++ F  
Sbjct: 113 VTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFED 172

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
             +    P+   Y+ +I  L   G+LD A ++F  +     +     +  L++G    +R
Sbjct: 173 NSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDR 232

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYE- 315
             EA+ +L  M D    P      +L + + + G ++ A E  + M+      NV  Y  
Sbjct: 233 LQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNS 292

Query: 316 --------DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEW------SPEVV 361
                   +G D          S + +   +     L      NTL +       +PE  
Sbjct: 293 LIHGFCMTNGVD----------SALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEAN 342

Query: 362 SLLAD--AKFVWTTRLV--------CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEK 411
            L  D  AKF     +         CK L       T +      A  P    DV     
Sbjct: 343 RLFGDMKAKFCNPDVITYSCLIGGFCK-LERIDMARTLFDDMLKQAVLP----DVVTFST 397

Query: 412 MLTILARHGHVELVDRLIAKL-RSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470
           ++      G V+  +RL+ ++  SD     ++   L+  F  + +  +A        +  
Sbjct: 398 LVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRG 457

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
           C P      ++ Y++L+    +  +   A  +LEEM+ +G+ P+V T+  L+  F   GD
Sbjct: 458 CQPN-----VVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGD 512

Query: 531 EKIVQKLFS-MVRQNGVEPDAYMFKVLIQAYCK 562
            +  +K+   + R    + D + ++V++   C+
Sbjct: 513 LEEARKMLERLERDENCKADMFAYRVMMDGLCR 545



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 100/474 (21%), Positives = 173/474 (36%), Gaps = 59/474 (12%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++ I++    K  +  EA   F ++  +G +PN  TY V+I     + K+  A  +   +
Sbjct: 9   TWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEM 68

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFI 292
               +      Y  ++ GF    + D A  L  +M ++G  P        L  +   G +
Sbjct: 69  KESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLM 128

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQ--LKPWLDPKALA 350
             A E L EM            E G   D+   D   +G+     +   LK + D     
Sbjct: 129 DEAYELLDEM-----------RERGLQPDKFSYDTLMAGLCKTGKIDMALKVFED----- 172

Query: 351 NTLDEWSPEVVSLLA-DAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPG------ 401
           N+  +  P+VV+     A    T RL   CK+    +          + A   G      
Sbjct: 173 NSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDR 232

Query: 402 ---------------YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
                           T +V     ++  L + G V     +  ++   G+     T   
Sbjct: 233 LQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNS 292

Query: 447 IIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
           +I  + ++   D+AL    ++ T  G +     ++ Y++L+  L K  R  +A  +  +M
Sbjct: 293 LIHGFCMTNGVDSAL-LLMEEMTATGCLPD---IITYNTLIDGLCKTGRAPEANRLFGDM 348

Query: 507 IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC----- 561
                 PDV T+S L+  F       + + LF  + +  V PD   F  L++ YC     
Sbjct: 349 KAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLV 408

Query: 562 -------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
                  + +  S+  PD  T   L     K GR  EA  V +R  K    P++
Sbjct: 409 DDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNV 462



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 87/223 (39%), Gaps = 6/223 (2%)

Query: 79  APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV 138
           AP A+     M+A   NP+      T   L     K +R    +TL  D+     L   V
Sbjct: 338 APEANRLFGDMKAKFCNPDVI----TYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVV 393

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
            F  L++ Y  +G ++       E           +Y  ++  + K G+  EA    +++
Sbjct: 394 TFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRM 453

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
              G  PN  TYT +I+     GK   A ++   +    ++     Y  L+ GF G    
Sbjct: 454 AKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDL 513

Query: 259 DEAKSLLNEMRDDGKFPGR--AMRVALERMQEMGFIQGANEFL 299
           +EA+ +L  +  D        A RV ++ +   G +  A E L
Sbjct: 514 EEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALELL 556



 Score = 43.1 bits (100), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 47/234 (20%), Positives = 92/234 (39%), Gaps = 6/234 (2%)

Query: 40  AQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVT-----HALRSAPNADSALSIMEALKS 94
           + LI  +    R + +  L   + +   +P +VT       L        A  ++E ++ 
Sbjct: 186 STLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMED 245

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
             N + N  T  +L   L K+ +  + + +   +         V + +L+  +  +  ++
Sbjct: 246 R-NCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVD 304

Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
             L    E      L    +YN ++    KTG+  EA   F  +  +   P+  TY+ +I
Sbjct: 305 SALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLI 364

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
                L ++D A  +F  +    +      +  LVEG+      D+A+ LL EM
Sbjct: 365 GGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEM 418


>gi|15232008|ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09060
 gi|5923671|gb|AAD56322.1|AC009326_9 hypothetical protein [Arabidopsis thaliana]
 gi|332641194|gb|AEE74715.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 106/529 (20%), Positives = 206/529 (38%), Gaps = 79/529 (14%)

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVI-DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
           ++YN+++ +  K  K FE    F   +  EG  P+  +Y+ +I  L   GKLD ALE+F 
Sbjct: 150 QTYNVLIKMSCKK-KEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFD 208

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK-FPG-RAMRVALERMQEM 289
            +    +      Y IL++GF+  +    A  L + + +D   +P  +   + +  + + 
Sbjct: 209 EMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKC 268

Query: 290 GFIQGANEFLREMLPDKRIKNVRYYE-------DGSDDDEDEN-----DDNNSGVR-IAY 336
           G +    +    M  ++R K++  Y        D  + D+ E+     D+  + +  + Y
Sbjct: 269 GRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTY 328

Query: 337 GVQLKPWLDPKALANTLDEW-------SPEVVS-------LLADAKFVWTTRLVCKVL-- 380
              L  +     +  +L+ W       S  +VS       LL + K    T ++ +++  
Sbjct: 329 NTMLGGFCRCGKIKESLELWRIMEHKNSVNIVSYNILIKGLLENGKIDEAT-MIWRLMPA 387

Query: 381 RHFKSPETAWHFFCWVAYQPGYTH----------------DVYALEKMLTILARHGHVEL 424
           + + + +T +  F       GY +                DVYA   ++  L +   +E 
Sbjct: 388 KGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEE 447

Query: 425 VDRLIAKLRSDGMRLPFSTIR-LIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLY 483
              L+ ++   G+ L       LI      S+  +A+       +  C P      ++ Y
Sbjct: 448 ASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPT-----VVSY 502

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           + L+  L K  +  +A   ++EM+ +G  PD++T+S L+          +  +L+    Q
Sbjct: 503 NILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQ 562

Query: 544 NGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKE 591
           +G+E D  M  +LI   C              + + N   +  T   L +  +K G    
Sbjct: 563 SGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNR 622

Query: 592 AAAVEERCEKINDVPSL-----------ALRGHIWAVSSADLTRVHSIY 629
           A  +     K+   P +             RG  +A+   D  R H I+
Sbjct: 623 ATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDDARNHGIF 671



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 104/269 (38%), Gaps = 47/269 (17%)

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           V K+L+  K+P  A+  F      PGY H       +L  L+    V  V R++  +RS 
Sbjct: 13  VLKLLKSEKNPRAAFALFDSATRHPGYAHSAVVYHHILRRLSETRMVNHVSRIVELIRSQ 72

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL--CGP-ISKFKLML----------- 481
             +        +I  YG +   D AL  F   R +  C P I  +  +L           
Sbjct: 73  ECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVK 132

Query: 482 ------------------LYSSLLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLM 522
                              Y+ L++   K K++F+ A   L+ M   G  PDV ++S ++
Sbjct: 133 VESLFAYFETAGVAPNLQTYNVLIKMSCK-KKEFEKARGFLDWMWKEGFKPDVFSYSTVI 191

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK-------------YLSNSNL 569
              A  G      +LF  + + GV PD   + +LI  + K              L +S++
Sbjct: 192 NDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSV 251

Query: 570 MPDAATKELLKKSLWKEGRRKEAAAVEER 598
            P+  T  ++   L K GR  +   + ER
Sbjct: 252 YPNVKTHNIMISGLSKCGRVDDCLKIWER 280



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 93/204 (45%), Gaps = 13/204 (6%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATV---LAKSQRNHELKTLIGD 127
           I  H L      + AL +M+ ++S    S     ++A A++   L K +R  E   L+ +
Sbjct: 399 IFIHGLCVNGYVNKALGVMQEVES----SGGHLDVYAYASIIDCLCKKKRLEEASNLVKE 454

Query: 128 ISSSKF-LNVSVN--FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK 184
           +S     LN  V    +  +   S  G+    L    +   R  ++S   YNI++    K
Sbjct: 455 MSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVS---YNILICGLCK 511

Query: 185 TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQ 244
            GK  EA    +++++ G  P+ +TY++++  L    K+D ALE++       ++     
Sbjct: 512 AGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMM 571

Query: 245 YLILVEGFVGVERFDEAKSLLNEM 268
           + IL+ G   V + D+A +++  M
Sbjct: 572 HNILIHGLCSVGKLDDAMTVMANM 595



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/133 (21%), Positives = 64/133 (48%), Gaps = 1/133 (0%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           + +L+     +G+++   S +NE  +R   +   +YN ++  + + GK  E++E +R ++
Sbjct: 293 YSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWR-IM 351

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           +     N  +Y ++I+ L+  GK+D A  ++  +P          Y I + G       +
Sbjct: 352 EHKNSVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVN 411

Query: 260 EAKSLLNEMRDDG 272
           +A  ++ E+   G
Sbjct: 412 KALGVMQEVESSG 424


>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 108/260 (41%), Gaps = 51/260 (19%)

Query: 349 LANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYA 408
           L NT + WS E+ S LA+     +   V + L+  ++P  A HFF WV  + G+TH+  +
Sbjct: 72  LINT-EPWSHELQSSLAELAPSLSKTTVLQTLQLIRTPAKALHFFRWVEAK-GFTHNEQS 129

Query: 409 LEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR 468
              M+ IL R  ++      +                     + I KK+  A+K    DR
Sbjct: 130 YFLMIEILGRSRNLNAARNFV---------------------FSIEKKSGGAVKL--GDR 166

Query: 469 TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
                         ++SL+R+        ++I V + M   G+ P V TF+ L+     +
Sbjct: 167 -------------FFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKR 213

Query: 529 GDEKIVQKLF-SMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAAT 575
           G   + ++LF  M+   GV PD Y F +LI+ +C            K +S     PD  T
Sbjct: 214 GRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVT 273

Query: 576 KELLKKSLWKEGRRKEAAAV 595
              L   L + G+ K A  V
Sbjct: 274 YNTLVDGLCRAGKVKIAHNV 293



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 15/124 (12%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA-LQGDEKIVQKLFSMV 541
           Y++L+R     +   +A+++L EM+  G+ P+  T++ L+      Q  +KI + L  MV
Sbjct: 311 YTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMV 370

Query: 542 RQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEG-- 587
              G  PD      LI+A+C            + +S   + PD+AT  +L +SL + G  
Sbjct: 371 GDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDF 430

Query: 588 RRKE 591
           RR E
Sbjct: 431 RRAE 434



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 1/134 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L++ Y    D+   LS   E   R    +  +YN ++    +  K  +  E    
Sbjct: 309 VTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEG 368

Query: 198 VI-DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           ++ D G IP++ T   +I+    +GKL+ A  VF  +  +R++  S  Y +LV       
Sbjct: 369 MVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRG 428

Query: 257 RFDEAKSLLNEMRD 270
            F  A+   +E+ +
Sbjct: 429 DFRRAEEFFDELAE 442


>gi|255542424|ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548236|gb|EEF49727.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 532

 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 116/260 (44%), Gaps = 4/260 (1%)

Query: 48  LAVRSNSSNSLS-SLLNDRLLDPFIVTHAL-RSAPNADSALSIMEALKSNPNFSHNQSTL 105
           L VRS+ S++ S   L+++L DP +    + R   N    L  ME  + N +  H  ST 
Sbjct: 37  LFVRSHCSDATSLGYLSEKLNDPLVAFEVIKRLNNNPQVGLKFMEFCRLNFSLIHCFSTY 96

Query: 106 HALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQ 165
             L   L +   +  ++ +IG + S   L  S     L+  ++ +G  +L      E + 
Sbjct: 97  ELLIRSLCQMGLHDLVEMVIGYMRSDGHLIDSRVLGFLVTSFAQAGKFDLAKKLIIEVQG 156

Query: 166 RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
               +S+  YN +++   K GK  EA+  F++ +   + PN+ T+ ++I  L  +G+++ 
Sbjct: 157 EEARISSFVYNYLLNELVKGGKVHEAIFLFKENLAFHSPPNTWTFNILIRGLCRVGEVEK 216

Query: 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM--RDDGKFPGRAMRVAL 283
             E+F+A+           Y  L+ G       D A  LL E+  R+D           +
Sbjct: 217 GFELFNAMQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSII 276

Query: 284 ERMQEMGFIQGANEFLREML 303
              +++G ++ A+    EM+
Sbjct: 277 SGFRKLGKLEAASVLFEEMI 296



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 59/138 (42%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F +L+  Y  +GD+ L L  W+  + R    +  +Y+++++   K  +  EA +  RQ
Sbjct: 340 VTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIINALCKDNRIHEARDLLRQ 399

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +      P    Y  +I+     G +D A  + + +   R +     + IL+ G     R
Sbjct: 400 LKCSDVFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGR 459

Query: 258 FDEAKSLLNEMRDDGKFP 275
             EA  +  +M   G  P
Sbjct: 460 MVEALDIFKKMLAIGCAP 477



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 21/228 (9%)

Query: 385 SPETAWHF--FCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFS 442
           +P+    F  FC + +   +    Y L  ++  L + G  +LV+ +I  +RSDG  +   
Sbjct: 72  NPQVGLKFMEFCRLNFSLIHCFSTYEL--LIRSLCQMGLHDLVEMVIGYMRSDGHLIDSR 129

Query: 443 TIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINV 502
            +  ++  +  + K D A K   + +     IS F    +Y+ LL  L K  +  +AI +
Sbjct: 130 VLGFLVTSFAQAGKFDLAKKLIIEVQGEEARISSF----VYNYLLNELVKGGKVHEAIFL 185

Query: 503 LEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            +E +     P+  TF+ L+      G+ +   +LF+ ++  G  PD   +  LI   CK
Sbjct: 186 FKENLAFHSPPNTWTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCK 245

Query: 563 -------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
                          S ++  PD  T   +     K G+ + A+ + E
Sbjct: 246 ANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFE 293



 Score = 47.0 bits (110), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 82/224 (36%), Gaps = 36/224 (16%)

Query: 383 FKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFS 442
           F SP   W F                   ++  L R G VE    L   ++S G      
Sbjct: 192 FHSPPNTWTF-----------------NILIRGLCRVGEVEKGFELFNAMQSFGCLPDVV 234

Query: 443 TIRLIIDFYGISKKADAALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAI 500
           T   +I     + + D A     +   R  C P      ++ Y+S++    K  +   A 
Sbjct: 235 TYNTLISGLCKANELDRACDLLKEVQSRNDCSPD-----VMTYTSIISGFRKLGKLEAAS 289

Query: 501 NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
            + EEMI SGI P V TF+ L+  F   G+    + +   +      PD   F  LI  Y
Sbjct: 290 VLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGY 349

Query: 561 CK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           C+             +   N+ P+  T  ++  +L K+ R  EA
Sbjct: 350 CRTGDIRLGLKVWDVMKARNVSPNIYTYSVIINALCKDNRIHEA 393



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 31/173 (17%), Positives = 72/173 (41%), Gaps = 2/173 (1%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + + +++  +   G LE     + E  +     +  ++N+++  + K G    A     +
Sbjct: 270 MTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAMHEK 329

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +     IP+  T+T +I+     G +   L+V+  +    +      Y +++       R
Sbjct: 330 MASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIINALCKDNR 389

Query: 258 FDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIK 309
             EA+ LL +++    FP   +    ++   + G +  AN  + EM  +KR +
Sbjct: 390 IHEARDLLRQLKCSDVFPKPFIYNPVIDGFCKAGNVDEANVIVTEM-EEKRCR 441


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 98/508 (19%), Positives = 194/508 (38%), Gaps = 59/508 (11%)

Query: 143 LMQWYSTSGDLELVLSTWNEY--RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
           ++Q    +GDL++ L+        + A      SYN+V++   ++GK  +A++ F +++D
Sbjct: 163 VVQACVAAGDLDVALAMVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVD 222

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
            G +PN  TY  MI+  V  G L++   +   +     K     Y +L+ G     R DE
Sbjct: 223 MGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDE 282

Query: 261 AKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDG-SD 319
            + L                     M EM            M PD    ++ +  DG + 
Sbjct: 283 TRVL---------------------MDEMAS--------HSMFPDGFTYSILF--DGLTR 311

Query: 320 DDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEW----SPEVVSLLADAKFVWTTRL 375
             E     +     +  GV L  +     L     +     + +V+ +L     V TT +
Sbjct: 312 TGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVI 371

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTH---DVYALEKMLTILARHGHVELVDRLIAKL 432
              ++  +         FC +  Q    H   D      ++  L +   V   + L+ ++
Sbjct: 372 YNTLINGYCQVRDLRGAFC-IFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEM 430

Query: 433 RSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK 492
              G+     T   +ID YG + + +       D +   G  S    ++ + S+++   K
Sbjct: 431 EKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQK-GIKSD---VISFGSVVKAFCK 486

Query: 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYM 552
             +  +A+ +L++MI+  + P+ Q ++ ++  +   GD +    L   ++ +GV      
Sbjct: 487 NGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVT 546

Query: 553 FKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCE 600
           + +L++  C+             L N  L PD  +   +  +   +G   +A  + +   
Sbjct: 547 YNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMN 606

Query: 601 KINDVPSLALRGHIWAVSSADLTRVHSI 628
           K    P+L    H    + A   RVH +
Sbjct: 607 KYGIRPTLRTY-HTLVSALASAGRVHDM 633



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 85/192 (44%), Gaps = 1/192 (0%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL 143
            A  I E +KS  +   +  T +AL   L K +   + + L+ ++  S        F  L
Sbjct: 387 GAFCIFEQMKSR-HIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTL 445

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
           +  Y T+G LE   +  ++ +Q+       S+  V+  + K GK  EAV     +I +  
Sbjct: 446 IDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDV 505

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
            PN++ Y  +I+  +  G  + A  +   +    +  +   Y +L++G     + DEA+ 
Sbjct: 506 APNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEE 565

Query: 264 LLNEMRDDGKFP 275
           L+  +R+ G  P
Sbjct: 566 LIYTLRNQGLRP 577



 Score = 45.8 bits (107), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 34/170 (20%), Positives = 73/170 (42%), Gaps = 3/170 (1%)

Query: 102 QSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN---FMNLMQWYSTSGDLELVLS 158
           +S + +  +V+    +N ++   +  +    + +V+ N   + +++  Y  SGD E    
Sbjct: 471 KSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFL 530

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
              + +      S  +YN+++    ++ +  EA E    + ++G  P+  +Y  +I    
Sbjct: 531 LVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACC 590

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           N G  D ALE+   +    I+ T + Y  LV       R  + + L  +M
Sbjct: 591 NKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQM 640



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 48/99 (48%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SYN ++S     G   +A+E  +++   G  P  RTY  ++  L + G++     ++  +
Sbjct: 581 SYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQM 640

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
               ++ +S  Y I+V+ +V  E   +  SL  EM + G
Sbjct: 641 LHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKG 679



 Score = 42.4 bits (98), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 83/434 (19%), Positives = 165/434 (38%), Gaps = 75/434 (17%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y+I+     +TG++   +  F + + +G +  + T ++++  L   GK+  A +V   L
Sbjct: 301 TYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEML 360

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFI 292
               +  T+  Y  L+ G+  V     A  +  +M+     P      AL   + ++  +
Sbjct: 361 VHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMV 420

Query: 293 QGANEFLREML-----PDKRIKNVRYYEDGSDDDEDE-----NDDNNSGVR---IAYGVQ 339
             A + + EM      P     N      G+    ++     +D    G++   I++G  
Sbjct: 421 TKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSV 480

Query: 340 LKPWLDPKALANTLDEWSPEVVSLLADA--KFVWTTRLVCKVL--RHFKSPETAWHFFCW 395
           +K +     +        PE V++L D   K V     V   +   + +S +T   F   
Sbjct: 481 VKAFCKNGKI--------PEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLV 532

Query: 396 VAYQ-PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS 454
              +  G +  +     +L  L R   ++  + LI  LR+ G+R    +   II      
Sbjct: 533 EKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIIS----- 587

Query: 455 KKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD-AINVLEEMIFSGIVP 513
                           C                      K D D A+ +L+EM   GI P
Sbjct: 588 --------------ACCN---------------------KGDTDKALELLQEMNKYGIRP 612

Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDA 573
            ++T+  L+   A  G    ++ L+  +    VEP + ++ +++ AY +  ++S +    
Sbjct: 613 TLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVAS-- 670

Query: 574 ATKELLKKSLWKEG 587
                LKK + ++G
Sbjct: 671 -----LKKEMSEKG 679


>gi|255563546|ref|XP_002522775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538013|gb|EEF39626.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1071

 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 102/539 (18%), Positives = 198/539 (36%), Gaps = 60/539 (11%)

Query: 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
           ST + L  VL    +  +   L+  +  S ++   V +  ++ WY   G  +  L   ++
Sbjct: 169 STFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNWYCKKGRYKAALELIDQ 228

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
              +       +YN+++    K  ++ +     +++      PN  TY  +I   V  GK
Sbjct: 229 MGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMISPNEITYNSIINGFVKEGK 288

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA 282
           + +A  +F  + ++ +      Y  L++G      F++A ++L  M   G  P      A
Sbjct: 289 IGAATRIFQEMSMLNLLPNCVTYNALIDGHCHDGNFEQALTILEMMEATGPKPNEVSYSA 348

Query: 283 -----------------LERMQEMGFIQGA-------NEFLREMLPDKRIKNV-RYYEDG 317
                            LERM+  G I G        +   R  L ++ +K + +  +DG
Sbjct: 349 LLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMIDGLCRNGLLNESVKLLDKMLKDG 408

Query: 318 SDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVC 377
              D            + + V +  +     + N  +       + LA    ++TT    
Sbjct: 409 VVPDV-----------VTFSVLINGFCRVGKIKNVKEIICKMYKAGLAPNSIIYTTL--- 454

Query: 378 KVLRHFKSPETAWHFFCWVAY-QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
            +  + K+ +    F  +VA  + GY  + +    +++ L + G V + +     +   G
Sbjct: 455 -IYNYCKTGDVVEAFKVYVAMSRIGYDANCFICNVLVSSLCKDGKVGVAEYFFHHMSKIG 513

Query: 437 MRLPFS-TIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR 495
             +P S T   II+ YG S     A   F +        S F     Y  LL+ L +  +
Sbjct: 514 -NVPNSITFDCIINGYGNSGNGLKAFSMFDEMIKAGHHPSHFT----YGGLLKALCRAGK 568

Query: 496 DFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV 555
             +A  +L+++ +     D  T++ ++      G       LF  + Q  V PD+Y + +
Sbjct: 569 FKEAKRLLDKLHYIPSAVDTVTYNTILVETFKSGMLTDAVALFDEMVQRNVLPDSYTYAI 628

Query: 556 LIQA-------------YCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEK 601
           +                Y   L    + P+          L++ G+ K A    E  EK
Sbjct: 629 IFAGLIRRGKMVAALHFYGNLLGKGAVSPEKVMYTTFVDGLFRAGQSKAALYFCEDMEK 687



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 96/468 (20%), Positives = 178/468 (38%), Gaps = 86/468 (18%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           +++++ VY + G   +A+ETFR +   G  P+  T  +++  LV   K+ +    F  + 
Sbjct: 101 FDLLIRVYLREGMVGDALETFRLMGIRGFNPSVYTCNMLLGKLVKERKVGAVWLFFKEML 160

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQ 293
             R+      + IL+       +  +A  LL +M + G  P        L    + G  +
Sbjct: 161 ARRVCPDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNWYCKKGRYK 220

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTL 353
            A E + +M       +   Y    DD    N       R A G  L   +  + ++   
Sbjct: 221 AALELIDQMGSKGIEADACTYNMLVDDLCKNN-------RSAKGYLLLKKMRKRMISPNE 273

Query: 354 DEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKML 413
             ++  +   + + K    TR    + +         +   + A   G+ HD    E+ L
Sbjct: 274 ITYNSIINGFVKEGKIGAATR----IFQEMSMLNLLPNCVTYNALIDGHCHD-GNFEQAL 328

Query: 414 TIL----------------------ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY 451
           TIL                       RH   EL   ++ ++R +GM              
Sbjct: 329 TILEMMEATGPKPNEVSYSALLNGLCRHAKFELSKSILERMRMNGM-------------- 374

Query: 452 GISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
                             + G I+       Y++++  L +     +++ +L++M+  G+
Sbjct: 375 ------------------IVGCIA-------YTAMIDGLCRNGLLNESVKLLDKMLKDGV 409

Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--------- 562
           VPDV TFS L+  F   G  K V+++   + + G+ P++ ++  LI  YCK         
Sbjct: 410 VPDVVTFSVLINGFCRVGKIKNVKEIICKMYKAGLAPNSIIYTTLIYNYCKTGDVVEAFK 469

Query: 563 -YLSNSNLMPDAAT--KELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
            Y++ S +  DA      +L  SL K+G+   A        KI +VP+
Sbjct: 470 VYVAMSRIGYDANCFICNVLVSSLCKDGKVGVAEYFFHHMSKIGNVPN 517


>gi|34393621|dbj|BAC83297.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 657

 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/262 (20%), Positives = 110/262 (41%), Gaps = 15/262 (5%)

Query: 59  SSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRN 118
           S L+ + LLD  +    L      D+A+++ +A+ +      +  + + L     ++ R 
Sbjct: 220 SRLIYNCLLDGLVNAGLL------DTAVNVFDAMSTEDQVRPDVVSYNILIKGYCRAGRA 273

Query: 119 HELKTLIGDIS-SSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA--KLLSTESY 175
           H+    + ++   +K     V ++ LMQ + + G   + +  + E  +R     +   +Y
Sbjct: 274 HDAMARLSEMQEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIPQHAY 333

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
            +V+    K GK FE +  F +++  G   N+  YT +I+ +   G+   A+ +F  +  
Sbjct: 334 VLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFERMKD 393

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQG 294
             +K  S  Y ++V       + DEA +     ++ G         +L +   + G +  
Sbjct: 394 SGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQ 453

Query: 295 ANEFLREML-----PDKRIKNV 311
           + E   EM+     PD    NV
Sbjct: 454 SKELFEEMIAKGFVPDSYCYNV 475



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 86/205 (41%), Gaps = 1/205 (0%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N +   AL   + K  R  E   L   +  S     SV +  ++      G L+  ++ +
Sbjct: 364 NAAIYTALIDSMGKFGREKEAMALFERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACF 423

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
              +++   ++   Y  ++  + K G   ++ E F ++I +G +P+S  Y V+I+ L   
Sbjct: 424 RSCQEKGIAVNAIFYTSLIDGFGKAGMVDQSKELFEEMIAKGFVPDSYCYNVLIDGLAKS 483

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAM 279
           G++D A  ++  +      +T   Y IL++G     + +EA    + M D G  P   A 
Sbjct: 484 GRMDDACALYKRMEDDGCDQTVYTYTILIDGLFKEHKNEEALKFWDAMIDKGITPTAAAF 543

Query: 280 RVALERMQEMGFIQGANEFLREMLP 304
           R     +   G    A   L E+ P
Sbjct: 544 RTLASGLCLSGKFSRACRILDELAP 568



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 75/162 (46%), Gaps = 3/162 (1%)

Query: 117 RNHELKTLIGDISSSKFLNVSVN---FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE 173
           R  +L   +    S +   ++VN   + +L+  +  +G ++     + E   +  +  + 
Sbjct: 412 RFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQSKELFEEMIAKGFVPDSY 471

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
            YN+++   AK+G+  +A   ++++ D+G      TYT++I+ L    K + AL+ + A+
Sbjct: 472 CYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDGLFKEHKNEEALKFWDAM 531

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               I  T+  +  L  G     +F  A  +L+E+   G  P
Sbjct: 532 IDKGITPTAAAFRTLASGLCLSGKFSRACRILDELAPMGVIP 573



 Score = 42.4 bits (98), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM-RIKRTSKQYLILVEGFVGVERFDE 260
           G  P+   Y  +++ LVN G LD+A+ VF A+    +++     Y IL++G+    R  +
Sbjct: 216 GVEPSRLIYNCLLDGLVNAGLLDTAVNVFDAMSTEDQVRPDVVSYNILIKGYCRAGRAHD 275

Query: 261 AKSLLNEMRDDGKF 274
           A + L+EM++  K 
Sbjct: 276 AMARLSEMQEQAKL 289



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 70/194 (36%), Gaps = 16/194 (8%)

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLL 487
           L  +++  G++L   T  +I++      K D A+  F      C         + Y+SL+
Sbjct: 387 LFERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRS----CQEKGIAVNAIFYTSLI 442

Query: 488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE 547
               K      +  + EEMI  G VPD   ++ L+   A  G       L+  +  +G +
Sbjct: 443 DGFGKAGMVDQSKELFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCD 502

Query: 548 PDAYMFKVLIQAYCKYLSNS------------NLMPDAATKELLKKSLWKEGRRKEAAAV 595
              Y + +LI    K   N              + P AA    L   L   G+   A  +
Sbjct: 503 QTVYTYTILIDGLFKEHKNEEALKFWDAMIDKGITPTAAAFRTLASGLCLSGKFSRACRI 562

Query: 596 EERCEKINDVPSLA 609
            +    +  +P  A
Sbjct: 563 LDELAPMGVIPETA 576


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 106/246 (43%), Gaps = 11/246 (4%)

Query: 65  RLLDPFIVTHALRSAPNA-------DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR 117
           R +DP I T++  S  N        D A  + E + S   F  N  T + L     K++R
Sbjct: 354 RSIDPDIFTYS--SLINGFCMHDRLDEAKHMFELMISKDCFP-NVVTYNTLIKGFCKAKR 410

Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI 177
             E   L  ++S    +  +V +  L+Q    +GD ++    + +           +Y+I
Sbjct: 411 VEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSI 470

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           ++    K GK  +A+  F  +      P+  TY +MIE +   GK++   ++F +L L  
Sbjct: 471 LLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 530

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQ-EMGFIQGAN 296
           +K     Y  ++ GF      +EA +L  EM++DG  P       L R +   G    + 
Sbjct: 531 VKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASA 590

Query: 297 EFLREM 302
           E ++EM
Sbjct: 591 ELIKEM 596



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 86/439 (19%), Positives = 172/439 (39%), Gaps = 27/439 (6%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V   +L+  Y  S  +   ++  ++  +      T ++N ++       K  EAV    Q
Sbjct: 151 VTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQ 210

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++  G  P+  TY  ++  L   G +D AL +   +   +I+     Y  +++G    + 
Sbjct: 211 MVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKH 270

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
            D+A +L N+M   G  P      +L   +   G    A+  L  M+  K   NV  +  
Sbjct: 271 IDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSA 330

Query: 317 GSDDDEDENDDNNSGVRIAYGVQLKPWLDPK-----------ALANTLDEWSPEVVSLLA 365
             D    E     +     Y   +K  +DP             + + LDE       +++
Sbjct: 331 LIDAFVKEGKLVEA--EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMIS 388

Query: 366 DAKF--VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVE 423
              F  V T   + K     K  E     F  ++ Q G   +      ++  L + G  +
Sbjct: 389 KDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMS-QRGLVGNTVTYNTLIQGLFQAGDCD 447

Query: 424 LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL---M 480
           +  ++  K+ SDG+     T  +++D      K + AL  F         + K K+   +
Sbjct: 448 MAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFE-------YLQKSKMEPDI 500

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
             Y+ ++  + K  +  D  ++   +   G+ P+V  ++ ++  F  +G ++    LF  
Sbjct: 501 YTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFRE 560

Query: 541 VRQNGVEPDAYMFKVLIQA 559
           ++++G  PD+  +  LI+A
Sbjct: 561 MKEDGTLPDSGCYNTLIRA 579



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 14/133 (10%)

Query: 474 ISK--FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
           ISK  F  ++ Y++L++   K KR  + + +  EM   G+V +  T++ L+      GD 
Sbjct: 387 ISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDC 446

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELL 579
            + QK+F  +  +GV PD   + +L+   CK            YL  S + PD  T  ++
Sbjct: 447 DMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIM 506

Query: 580 KKSLWKEGRRKEA 592
            + + K G+ ++ 
Sbjct: 507 IEGMCKAGKVEDG 519



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 81/206 (39%), Gaps = 16/206 (7%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           Q G   D+     ++  L + G ++L   L+ K+    +         IID     K  D
Sbjct: 213 QRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHID 272

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
            A   F+   T       F     Y+SL+  L    R  DA  +L  MI   I P+V TF
Sbjct: 273 DAFALFNKMETKGIRPDVFT----YNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTF 328

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSN 566
           S L+  F  +G     +KL+  + +  ++PD + +  LI  +C +            + +
Sbjct: 329 SALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMIS 388

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEA 592
            +  P+  T   L K   K  R +E 
Sbjct: 389 KDCFPNVVTYNTLIKGFCKAKRVEEG 414



 Score = 46.6 bits (109), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 40/205 (19%), Positives = 86/205 (41%), Gaps = 20/205 (9%)

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALK 462
           ++D+Y+   ++    R   + L   ++ K+   G      T+  +++ Y  SK+   A+ 
Sbjct: 112 SYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAV- 170

Query: 463 AFHDDRTLCG--PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           A  D     G  P +     + +++L+  L    +  +A+ ++++M+  G  PD+ T+  
Sbjct: 171 ALVDQMVEMGYKPDT-----VTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGA 225

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSN 568
           ++     +GD  +   L   + +  +E D  ++  +I   CKY            +    
Sbjct: 226 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKG 285

Query: 569 LMPDAATKELLKKSLWKEGRRKEAA 593
           + PD  T   L   L   GR  +A+
Sbjct: 286 IRPDVFTYNSLISCLCNYGRWSDAS 310



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 34/172 (19%), Positives = 71/172 (41%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T ++L + L    R  +   L+ ++   K     V F  L+  +   G L      ++E 
Sbjct: 292 TYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM 351

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
            +R+      +Y+ +++ +    +  EA   F  +I +   PN  TY  +I+      ++
Sbjct: 352 IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRV 411

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +  +E+F  +    +   +  Y  L++G       D A+ +  +M  DG  P
Sbjct: 412 EEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPP 463


>gi|125558386|gb|EAZ03922.1| hypothetical protein OsI_26055 [Oryza sativa Indica Group]
          Length = 658

 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 84/439 (19%), Positives = 163/439 (37%), Gaps = 57/439 (12%)

Query: 59  SSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRN 118
           S L+ + LLD  +    L      D+A+++ +A+ +      +  + + L     ++ R 
Sbjct: 221 SRLIYNCLLDGLVNAGLL------DTAVNVFDAMSTEDQVRPDVVSYNILIKGYCRAGRA 274

Query: 119 HELKTLIGDIS-SSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA--KLLSTESY 175
           H+    + ++   +K     V ++ LMQ + + G   + +  + E  +R     +   +Y
Sbjct: 275 HDAMARLSEMQEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIPQHAY 334

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
            +V+    K GK FE +  F +++  G   N+  YT +I+ +   G+   A+ +F  +  
Sbjct: 335 VLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFERMKD 394

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQG 294
             +K  S  Y ++V       + DEA +     ++ G         +L +   + G +  
Sbjct: 395 SGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQ 454

Query: 295 ANEFLREML-----PDKRIKNV---RYYEDGSDDD-----EDENDDNNSGVRIAYGV--- 338
           + E   EM+     PD    NV      + G  DD     +   DD        Y +   
Sbjct: 455 SKELFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILID 514

Query: 339 ----------QLKPW--LDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSP 386
                      LK W  +  K +  T   +      L    KF    R++ ++      P
Sbjct: 515 GLFKEHKNEEALKFWDAMIDKGITPTAAAFRTLASGLCLSGKFSRACRILDELAPMGVIP 574

Query: 387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
           ETA                    E M+ +L + G  +   +L   +   G  +P     +
Sbjct: 575 ETAH-------------------EDMINVLCKAGRFKQACKLADGIVQKGREIPGRVRTM 615

Query: 447 IIDFYGISKKADAALKAFH 465
           +I+    +   D A+K  H
Sbjct: 616 MINALRKAGNTDLAVKLVH 634



 Score = 42.4 bits (98), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM-RIKRTSKQYLILVEGFVGVERFDE 260
           G  P+   Y  +++ LVN G LD+A+ VF A+    +++     Y IL++G+    R  +
Sbjct: 217 GVEPSRLIYNCLLDGLVNAGLLDTAVNVFDAMSTEDQVRPDVVSYNILIKGYCRAGRAHD 276

Query: 261 AKSLLNEMRDDGKF 274
           A + L+EM++  K 
Sbjct: 277 AMARLSEMQEQAKL 290



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 70/194 (36%), Gaps = 16/194 (8%)

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLL 487
           L  +++  G++L   T  +I++      K D A+  F      C         + Y+SL+
Sbjct: 388 LFERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRS----CQEKGIAVNAIFYTSLI 443

Query: 488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE 547
               K      +  + EEMI  G VPD   ++ L+   A  G       L+  +  +G +
Sbjct: 444 DGFGKAGMVDQSKELFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCD 503

Query: 548 PDAYMFKVLIQAYCKYLSNS------------NLMPDAATKELLKKSLWKEGRRKEAAAV 595
              Y + +LI    K   N              + P AA    L   L   G+   A  +
Sbjct: 504 QTVYTYTILIDGLFKEHKNEEALKFWDAMIDKGITPTAAAFRTLASGLCLSGKFSRACRI 563

Query: 596 EERCEKINDVPSLA 609
            +    +  +P  A
Sbjct: 564 LDELAPMGVIPETA 577


>gi|15221377|ref|NP_177613.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207514|sp|Q9SSF9.1|PP123_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74750
 gi|5882748|gb|AAD55301.1|AC008263_32 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
 gi|332197508|gb|AEE35629.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 855

 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 101/248 (40%), Gaps = 18/248 (7%)

Query: 378 KVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM 437
           +VL+   +   A  FF W+  QPG+ HD +    M+  L R      +++L+ ++  DG 
Sbjct: 331 QVLKQMDNYANALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGC 390

Query: 438 RLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
           +    T   +I  YG +     A+  F+      C P       + Y +L+    K    
Sbjct: 391 KPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDR-----VTYCTLIDIHAKAGFL 445

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
             A+++ + M  +G+ PD  T+S ++      G      +LF  +   G  P+   F ++
Sbjct: 446 DIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIM 505

Query: 557 IQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND 604
           I  + K             + N+   PD  T  ++ + L   G  +EA  V    ++ N 
Sbjct: 506 IALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNW 565

Query: 605 VPSLALRG 612
           VP   + G
Sbjct: 566 VPDEPVYG 573



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/248 (19%), Positives = 110/248 (44%), Gaps = 6/248 (2%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           +D +     L+   N  +AL     LK  P F H+  T   +   L ++++  E+  L+ 
Sbjct: 324 MDAYQANQVLKQMDNYANALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLD 383

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
           ++        +V +  L+  Y  +  L+  ++ +N+ ++        +Y  ++ ++AK G
Sbjct: 384 EMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAG 443

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
               A++ ++++ + G  P++ TY+V+I  L   G L +A  +F  +           + 
Sbjct: 444 FLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFN 503

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM--- 302
           I++        ++ A  L  +M++ G  P +    + +E +   GF++ A     EM   
Sbjct: 504 IMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRK 563

Query: 303 --LPDKRI 308
             +PD+ +
Sbjct: 564 NWVPDEPV 571


>gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 111/591 (18%), Positives = 216/591 (36%), Gaps = 84/591 (14%)

Query: 72  VTHALRSAPNAD--SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDIS 129
           V H LRSA  AD   AL +  ++   P   H   + + +  ++    R  ++  +  D+ 
Sbjct: 69  VVHMLRSAAAADPEEALELFLSVARQPRVVHTTESCNYMLELMRAHGRVGDVAQVF-DLM 127

Query: 130 SSKFLNVSVN-FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN 188
             + +  +V  F  +       G L          ++   +L+  +YN ++    K+G +
Sbjct: 128 QRQIIKANVGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLIYFLVKSGFD 187

Query: 189 FEAVETFRQVIDEGAIPNSRTYTVMI---------EHLVNL------------------- 220
            EA++ ++ +  +G +P  RTY+V++         E +V L                   
Sbjct: 188 REAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTIC 247

Query: 221 -------GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
                  G+L+ A  +   +     K       +L++      R  +AK +  +M+   +
Sbjct: 248 IRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQ 307

Query: 274 FPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGV 332
            P R   + L ++  + G  +  +E    +  D    NV  Y    D             
Sbjct: 308 KPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVG------- 360

Query: 333 RIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHF 392
           R+   + +   +  K +      ++  +   L   +F     L   +  H  +P    H 
Sbjct: 361 RVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHV 420

Query: 393 FCWVAYQ------------------PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
             ++ Y                    G   DV A   +L  LA+ G + +  R+  +L++
Sbjct: 421 L-FINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKA 479

Query: 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKC 493
            G+     T  ++I     +  AD A+K F +     C P      +L  +SL+  L K 
Sbjct: 480 MGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPD-----VLAMNSLIDMLYKA 534

Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
            R  +A  +  E+    + P   T++ L+     +G  K V +L   +  N   P+   +
Sbjct: 535 GRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITY 594

Query: 554 KVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
             ++   CK             ++ +  MPD ++   +   L KEGR  EA
Sbjct: 595 NTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEGRLDEA 645



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 94/226 (41%), Gaps = 24/226 (10%)

Query: 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR 445
           PE A   F  VA QP   H   +   ML ++  HG V  V ++   ++   ++    T  
Sbjct: 81  PEEALELFLSVARQPRVVHTTESCNYMLELMRAHGRVGDVAQVFDLMQRQIIKANVGTFC 140

Query: 446 LIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLL----YSSLLRTLTKCKRDFDAIN 501
            +    G+     +A  A         P+ K   ++L    Y+ L+  L K   D +A++
Sbjct: 141 TVFGAVGVEGGLRSAPVAL--------PVMKEAGIVLNAYTYNGLIYFLVKSGFDREAMD 192

Query: 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI---- 557
           V + M   G+VP V+T+S LM  F  + D + V  L   +   GV P+ Y + + I    
Sbjct: 193 VYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVLG 252

Query: 558 ------QAY--CKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
                 +AY   + +      PD  T  +L + L   GR  +A  V
Sbjct: 253 QAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDV 298



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 1/205 (0%)

Query: 71   IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
            ++  A+  +   +  L I E +  N  +     T + + + L KS+   E   L   + S
Sbjct: 806  LILDAMGKSMRIEDMLKIQEEMH-NKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMS 864

Query: 131  SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
              F      +  L+      G++E   + ++E  +     +   YNI+++ Y   G   +
Sbjct: 865  EGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEK 924

Query: 191  AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
              E F  ++++G  P+ ++YTV+I+ L   G+L+  L  F  L  M ++     Y +L+ 
Sbjct: 925  VCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIH 984

Query: 251  GFVGVERFDEAKSLLNEMRDDGKFP 275
            G     R +EA SL N+M   G  P
Sbjct: 985  GLGKSGRLEEALSLYNDMEKKGIAP 1009



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 100/482 (20%), Positives = 182/482 (37%), Gaps = 75/482 (15%)

Query: 174  SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
            +YN +++   + GK  E ++    +      PN  TY  +++ L   G+++ AL++  ++
Sbjct: 558  TYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSM 617

Query: 234  PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
             +         Y  ++ G V   R DEA  +  +M+         +   L      G ++
Sbjct: 618  TMNGCMPDLSSYNTVMYGLVKEGRLDEAFWMFCQMKKVLAPDYATVCTILPSFVRSGLMK 677

Query: 294  GANEFLREML--PDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALAN 351
             A   +RE +  PD ++                  D +S   +  G+          L  
Sbjct: 678  EALHTVREYILQPDSKV------------------DRSSVHSLMEGI----------LKR 709

Query: 352  TLDEWSPEVVSLLADAKFVWTTRLVCKVLRHF-KSPET-AWHFFCWVAYQPGYTHDVYAL 409
               E S E    +A +  +     +  ++RHF K  E  A H         G +    + 
Sbjct: 710  DGTEKSIEFAENIASSGLLLDDLFLSPIIRHFCKHKEALAAHELVKKFENLGVSLKTGSY 769

Query: 410  EKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALK---AFHD 466
              ++  L     +++ + L ++++  G      T  LI+D  G S + +  LK     H+
Sbjct: 770  NALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHN 829

Query: 467  D---------RTLCGPISKFKLM-------------------LLYSSLLRTLTKCKRDFD 498
                       T+   + K K++                     Y  LL  L K     D
Sbjct: 830  KGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIED 889

Query: 499  AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
            A  + +EM+  G  P+   ++ L+  + + GD + V +LF  + + G+ PD   + V+I 
Sbjct: 890  AEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVID 949

Query: 559  AYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
              C            K L++  L PD  T  LL   L K GR +EA ++    EK    P
Sbjct: 950  TLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAP 1009

Query: 607  SL 608
            +L
Sbjct: 1010 NL 1011



 Score = 42.0 bits (97), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 49/106 (46%)

Query: 143  LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
            L+     SG LE  LS +N+  ++    +  +YN ++    K GK  EA + + +++ +G
Sbjct: 982  LIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKG 1041

Query: 203  AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
              PN  TY  +I      G  ++A   +  + +   +  S  Y+ L
Sbjct: 1042 WKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPNSSTYMQL 1087



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 38/233 (16%), Positives = 99/233 (42%), Gaps = 17/233 (7%)

Query: 44  DSIRLAVRSNSSNSL-SSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQ 102
           +++ +++++ S N+L   L+++ L+D             A+   S M+ L  +P+    +
Sbjct: 758 ENLGVSLKTGSYNALICGLVDEDLIDI------------AEELFSEMKRLGCDPD----E 801

Query: 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
            T H +   + KS R  ++  +  ++ +  + +  V +  ++     S  L+  ++ + +
Sbjct: 802 FTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQ 861

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
                   +  +Y  ++    K G   +A   F ++++ G  PN   Y +++      G 
Sbjct: 862 LMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGD 921

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            +   E+F ++    +    K Y ++++      R ++  S   ++ D G  P
Sbjct: 922 TEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEP 974



 Score = 40.4 bits (93), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 31/155 (20%), Positives = 65/155 (41%), Gaps = 1/155 (0%)

Query: 79  APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV 138
           A NAD A+ I   +  N   + +   +++L  +L K+ R +E   +  ++          
Sbjct: 499 ASNADEAMKIFAEMIEN-RCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDC 557

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
            +  L+      G ++ V+         +   +  +YN V+    K G+   A++    +
Sbjct: 558 TYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSM 617

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
              G +P+  +Y  ++  LV  G+LD A  +F  +
Sbjct: 618 TMNGCMPDLSSYNTVMYGLVKEGRLDEAFWMFCQM 652


>gi|297725689|ref|NP_001175208.1| Os07g0491500 [Oryza sativa Japonica Group]
 gi|255677777|dbj|BAH93936.1| Os07g0491500, partial [Oryza sativa Japonica Group]
          Length = 654

 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/262 (20%), Positives = 110/262 (41%), Gaps = 15/262 (5%)

Query: 59  SSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRN 118
           S L+ + LLD  +    L      D+A+++ +A+ +      +  + + L     ++ R 
Sbjct: 217 SRLIYNCLLDGLVNAGLL------DTAVNVFDAMSTEDQVRPDVVSYNILIKGYCRAGRA 270

Query: 119 HELKTLIGDIS-SSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA--KLLSTESY 175
           H+    + ++   +K     V ++ LMQ + + G   + +  + E  +R     +   +Y
Sbjct: 271 HDAMARLSEMQEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIPQHAY 330

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
            +V+    K GK FE +  F +++  G   N+  YT +I+ +   G+   A+ +F  +  
Sbjct: 331 VLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFERMKD 390

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQG 294
             +K  S  Y ++V       + DEA +     ++ G         +L +   + G +  
Sbjct: 391 SGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQ 450

Query: 295 ANEFLREML-----PDKRIKNV 311
           + E   EM+     PD    NV
Sbjct: 451 SKELFEEMIAKGFVPDSYCYNV 472



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 86/205 (41%), Gaps = 1/205 (0%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N +   AL   + K  R  E   L   +  S     SV +  ++      G L+  ++ +
Sbjct: 361 NAAIYTALIDSMGKFGREKEAMALFERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACF 420

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
              +++   ++   Y  ++  + K G   ++ E F ++I +G +P+S  Y V+I+ L   
Sbjct: 421 RSCQEKGIAVNAIFYTSLIDGFGKAGMVDQSKELFEEMIAKGFVPDSYCYNVLIDGLAKS 480

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAM 279
           G++D A  ++  +      +T   Y IL++G     + +EA    + M D G  P   A 
Sbjct: 481 GRMDDACALYKRMEDDGCDQTVYTYTILIDGLFKEHKNEEALKFWDAMIDKGITPTAAAF 540

Query: 280 RVALERMQEMGFIQGANEFLREMLP 304
           R     +   G    A   L E+ P
Sbjct: 541 RTLASGLCLSGKFSRACRILDELAP 565



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 75/162 (46%), Gaps = 3/162 (1%)

Query: 117 RNHELKTLIGDISSSKFLNVSVN---FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE 173
           R  +L   +    S +   ++VN   + +L+  +  +G ++     + E   +  +  + 
Sbjct: 409 RFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQSKELFEEMIAKGFVPDSY 468

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
            YN+++   AK+G+  +A   ++++ D+G      TYT++I+ L    K + AL+ + A+
Sbjct: 469 CYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDGLFKEHKNEEALKFWDAM 528

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               I  T+  +  L  G     +F  A  +L+E+   G  P
Sbjct: 529 IDKGITPTAAAFRTLASGLCLSGKFSRACRILDELAPMGVIP 570



 Score = 42.4 bits (98), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM-RIKRTSKQYLILVEGFVGVERFDE 260
           G  P+   Y  +++ LVN G LD+A+ VF A+    +++     Y IL++G+    R  +
Sbjct: 213 GVEPSRLIYNCLLDGLVNAGLLDTAVNVFDAMSTEDQVRPDVVSYNILIKGYCRAGRAHD 272

Query: 261 AKSLLNEMRDDGKF 274
           A + L+EM++  K 
Sbjct: 273 AMARLSEMQEQAKL 286



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 70/194 (36%), Gaps = 16/194 (8%)

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLL 487
           L  +++  G++L   T  +I++      K D A+  F      C         + Y+SL+
Sbjct: 384 LFERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRS----CQEKGIAVNAIFYTSLI 439

Query: 488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE 547
               K      +  + EEMI  G VPD   ++ L+   A  G       L+  +  +G +
Sbjct: 440 DGFGKAGMVDQSKELFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCD 499

Query: 548 PDAYMFKVLIQAYCKYLSNS------------NLMPDAATKELLKKSLWKEGRRKEAAAV 595
              Y + +LI    K   N              + P AA    L   L   G+   A  +
Sbjct: 500 QTVYTYTILIDGLFKEHKNEEALKFWDAMIDKGITPTAAAFRTLASGLCLSGKFSRACRI 559

Query: 596 EERCEKINDVPSLA 609
            +    +  +P  A
Sbjct: 560 LDELAPMGVIPETA 573


>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Vitis vinifera]
          Length = 746

 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 108/260 (41%), Gaps = 51/260 (19%)

Query: 349 LANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYA 408
           L NT + WS E+ S LA+     +   V + L+  ++P  A HFF WV  + G+TH+  +
Sbjct: 72  LINT-EPWSHELQSSLAELAPSLSKTTVLQTLQLIRTPAKALHFFRWVEAK-GFTHNEQS 129

Query: 409 LEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR 468
              M+ IL R  ++      +                     + I KK+  A+K    DR
Sbjct: 130 YFLMIEILGRSRNLNAARNFV---------------------FSIEKKSGGAVKL--GDR 166

Query: 469 TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
                         ++SL+R+        ++I V + M   G+ P V TF+ L+     +
Sbjct: 167 -------------FFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKR 213

Query: 529 GDEKIVQKLF-SMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAAT 575
           G   + ++LF  M+   GV PD Y F +LI+ +C            K +S     PD  T
Sbjct: 214 GRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVT 273

Query: 576 KELLKKSLWKEGRRKEAAAV 595
              L   L + G+ K A  V
Sbjct: 274 YNTLVDGLCRAGKVKIAHNV 293



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 15/124 (12%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA-LQGDEKIVQKLFSMV 541
           Y++L+R     +   +A+++L EM+  G+ P+  T++ L+      Q  +KI + L  MV
Sbjct: 311 YTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMV 370

Query: 542 RQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEG-- 587
              G  PD      LI+A+C            + +S   + PD+AT  +L +SL + G  
Sbjct: 371 GDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDF 430

Query: 588 RRKE 591
           RR E
Sbjct: 431 RRAE 434



 Score = 47.0 bits (110), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 1/134 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L++ Y    D+   LS   E   R    +  +YN ++    +  K  +  E    
Sbjct: 309 VTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEG 368

Query: 198 VI-DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           ++ D G IP++ T   +I+    +GKL+ A  VF  +  +R++  S  Y +LV       
Sbjct: 369 MVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRG 428

Query: 257 RFDEAKSLLNEMRD 270
            F  A+   +E+ +
Sbjct: 429 DFRRAEEFFDELAE 442


>gi|15240991|ref|NP_198689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171307|sp|Q9FKR3.1|PP404_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g38730
 gi|10176899|dbj|BAB10131.1| unnamed protein product [Arabidopsis thaliana]
 gi|332006971|gb|AED94354.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 596

 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 98/241 (40%), Gaps = 34/241 (14%)

Query: 383 FKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFS 442
           +  P  +W FF W    P   H + +  KM+ IL +H H +   +L+ KL    +     
Sbjct: 57  YGGPSLSWSFFIWTDSLPSSKHSLQSSWKMILILTKHKHFKTAHQLLDKLAQRELLSSPL 116

Query: 443 TIRLIID------------------FYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS 484
            +R ++                   +Y  +   + ++  F   R+ CG     +     +
Sbjct: 117 VLRSLVGGVSEDPEDVSHVFSWLMIYYAKAGMINDSIVVFEQIRS-CGLKPHLQAC---T 172

Query: 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544
            LL +L K +       + ++M+  G+V ++  ++ L++  +  GD +  +KL S + + 
Sbjct: 173 VLLNSLVKQRLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEK 232

Query: 545 GVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           GV PD + +  LI  YCK             +  S + P+  T         +EGR +EA
Sbjct: 233 GVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSREGRMREA 292

Query: 593 A 593
            
Sbjct: 293 T 293



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 112/276 (40%), Gaps = 14/276 (5%)

Query: 41  QLIDSIRLAVRS--NSSNSLSSLLNDRLLDPFIVTHALR-------SAPNADSALSIMEA 91
           QL+D  +LA R   +S   L SL+     DP  V+H           A   + ++ + E 
Sbjct: 101 QLLD--KLAQRELLSSPLVLRSLVGGVSEDPEDVSHVFSWLMIYYAKAGMINDSIVVFEQ 158

Query: 92  LKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG 151
           ++S     H Q+    L +++ +   +   K     +      N+ V +  L+   S SG
Sbjct: 159 IRSCGLKPHLQACTVLLNSLVKQRLTDTVWKIFKKMVKLGVVANIHV-YNVLVHACSKSG 217

Query: 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT 211
           D E      +E  ++       +YN ++SVY K   +FEA+    ++   G  PN  TY 
Sbjct: 218 DPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYN 277

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
             I      G++  A  +F  +    +      Y  L++G+  +   DEA  L   M   
Sbjct: 278 SFIHGFSREGRMREATRLFREIK-DDVTANHVTYTTLIDGYCRMNDIDEALRLREVMESR 336

Query: 272 GKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDK 306
           G  PG       L ++ E G I+ AN  L EM   K
Sbjct: 337 GFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKK 372



 Score = 46.2 bits (108), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 28/128 (21%), Positives = 60/128 (46%), Gaps = 13/128 (10%)

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
           F  +  Y++L+    K    F+A++V + M  SG+ P++ T++  ++ F+ +G  +   +
Sbjct: 235 FPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSREGRMREATR 294

Query: 537 LFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLW 584
           LF  ++ + V  +   +  LI  YC+             + +    P   T   + + L 
Sbjct: 295 LFREIKDD-VTANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLC 353

Query: 585 KEGRRKEA 592
           ++GR +EA
Sbjct: 354 EDGRIREA 361



 Score = 42.7 bits (99), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 91/231 (39%), Gaps = 22/231 (9%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           + G   ++      +   +R G +    RL  +++ D +     T   +ID Y      D
Sbjct: 266 RSGVAPNIVTYNSFIHGFSREGRMREATRLFREIKDD-VTANHVTYTTLIDGYCRMNDID 324

Query: 459 AALK--AFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
            AL+     + R     +      + Y+S+LR L +  R  +A  +L EM    I PD  
Sbjct: 325 EALRLREVMESRGFSPGV------VTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNI 378

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSN-------- 568
           T + L+  +    D     K+   + ++G++ D Y +K LI  +CK L   N        
Sbjct: 379 TCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELENAKEELFSM 438

Query: 569 ----LMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLAL-RGHI 614
                 P  AT   L    + + ++ E   + E  EK      +AL RG I
Sbjct: 439 IEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYRGLI 489


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 96/493 (19%), Positives = 175/493 (35%), Gaps = 67/493 (13%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           +V  +L      D A  ++E +      + N  T  AL   L K +R  E   L+  ++ 
Sbjct: 79  VVVQSLCLGDRVDDARELVEEMLHR-GMAANAITYSALVDGLCKCERLDEAVALVETMAE 137

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                  V + +++  +  +  ++       +           +Y  ++  + K+     
Sbjct: 138 RGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGR 197

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
            +E   +V   G  P+  TY+ +I+ L   G+L  A+++F     M    T+  Y  L+ 
Sbjct: 198 GLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEE---MSCAPTAITYNSLIG 254

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIK 309
           G+      DEA  LL +M DD   P       L     +MG +  A E  ++M+ +K   
Sbjct: 255 GYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANK--- 311

Query: 310 NVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF 369
                                             L P  +      ++  V  L  + + 
Sbjct: 312 ----------------------------------LSPDVVT-----FTSLVDGLCGEGRM 332

Query: 370 VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
                L+ ++ R    P T + + C V    GY               +   V   + L+
Sbjct: 333 EDALELLEEITRR-GCPPTIYTYNCVV---DGY--------------CKANQVRKAEELV 374

Query: 430 AKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRT 489
           A  RS G      T  +++     + + D AL+      +  GP      M  Y+ +L  
Sbjct: 375 ADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAM--YAIILDA 432

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
           L +  R  DA+   EEMI  G VP   TF+ +++        +   +L   + + G  P 
Sbjct: 433 LCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPG 492

Query: 550 AYMFKVLIQAYCK 562
                 ++ AYC+
Sbjct: 493 PGTCDAVVSAYCR 505



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 100/239 (41%), Gaps = 9/239 (3%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNP 96
           L+D +    R + + +L   + +R   P +VT+         A   D A   ME + +  
Sbjct: 115 LVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAE- 173

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
               +  T  AL     KS+       L+G+++   F    V +  ++     +G L   
Sbjct: 174 GCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDA 233

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           +  + E       ++   YN ++  Y + G   EA+    +++D+   P+  TYT ++  
Sbjct: 234 VDIFEEMSCAPTAIT---YNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSA 290

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              +G+LD A E+F  +   ++      +  LV+G  G  R ++A  LL E+   G  P
Sbjct: 291 FCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPP 349



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/207 (19%), Positives = 85/207 (41%), Gaps = 25/207 (12%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G+T D+     ++  L + G +     +  ++      + ++++   I  Y  +   D A
Sbjct: 209 GFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAITYNSL---IGGYCRAGDMDEA 265

Query: 461 LKAFH---DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
           ++      DD+  C P      ++ Y++L+    K  R  DA  + ++M+ + + PDV T
Sbjct: 266 IRLLGKMVDDK--CAPD-----VVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVT 318

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LS 565
           F+ L+     +G  +   +L   + + G  P  Y +  ++  YCK               
Sbjct: 319 FTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFR 378

Query: 566 NSNLMPDAATKELLKKSLWKEGRRKEA 592
           +   +P+  T  +L     + GR  +A
Sbjct: 379 SRGFVPNTVTYNILVAGCCRAGRTDQA 405



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 12/129 (9%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           + YS+L+  L KC+R  +A+ ++E M   G  P V T++ ++  F               
Sbjct: 110 ITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQ 169

Query: 541 VRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGR 588
           +   G  PD   +  LI  +CK             ++     PD  T   +   L K GR
Sbjct: 170 MVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGR 229

Query: 589 RKEAAAVEE 597
            ++A  + E
Sbjct: 230 LRDAVDIFE 238



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 45/86 (52%)

Query: 190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV 249
           +AV+  ++++    +P++ T TV+++ L    ++D A E+   +    +   +  Y  LV
Sbjct: 57  DAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALV 116

Query: 250 EGFVGVERFDEAKSLLNEMRDDGKFP 275
           +G    ER DEA +L+  M + G  P
Sbjct: 117 DGLCKCERLDEAVALVETMAERGCAP 142



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           L Y+ L+  L+K +R  DA+ VL+EM+ +  VPD  T + ++    L       ++L   
Sbjct: 40  LTYTKLVHGLSKARRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEE 99

Query: 541 VRQNGVEPDAYMFKVLIQAYCK 562
           +   G+  +A  +  L+   CK
Sbjct: 100 MLHRGMAANAITYSALVDGLCK 121


>gi|225456631|ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74750
           [Vitis vinifera]
          Length = 875

 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 109/272 (40%), Gaps = 22/272 (8%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
           W P     L +   +       +VL+  +    A  FF W+  Q G+ HD +    M+ I
Sbjct: 329 WGPAAEEALRNLNCLMDAYQANQVLKQIQDHPVALGFFYWLKRQTGFKHDGHTYTTMVGI 388

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR---TLCG 472
           L R      +++L+A++  DG +    T   +I  YG +   + A+  F  DR     C 
Sbjct: 389 LGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVF--DRMQEAGCQ 446

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
           P       + Y +L+    K      A+++ ++M  + + PD  T+S ++      G   
Sbjct: 447 PDR-----VTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLT 501

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLK 580
              KLF  +   G  P+   + ++I    K             + N+   PD  T  ++ 
Sbjct: 502 SAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVM 561

Query: 581 KSLWKEGRRKEAAAVEERCEKINDVPSLALRG 612
           + L   G  +EA A+    ++ N VP   + G
Sbjct: 562 EVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYG 593



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/282 (18%), Positives = 116/282 (41%), Gaps = 36/282 (12%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           L+D +     L+   +   AL     LK    F H+  T   +  +L ++++   +  L+
Sbjct: 343 LMDAYQANQVLKQIQDHPVALGFFYWLKRQTGFKHDGHTYTTMVGILGRARQFGAINKLL 402

Query: 126 GDI-------------------SSSKFLNVSVNFMNLMQ----------------WYSTS 150
            ++                     + +LN +V+  + MQ                 ++ +
Sbjct: 403 AEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVFDRMQEAGCQPDRVTYCTLIDIHAKA 462

Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
           G L++ L  + + ++      T +Y+++++   K G    A + F +++D+G +PN  TY
Sbjct: 463 GFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTY 522

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
            +MI          +ALE++  +     +     Y I++E        +EA+++  EM+ 
Sbjct: 523 NIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKR 582

Query: 271 DGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNV 311
               P   +  + ++   ++G ++ + E+ + ML      NV
Sbjct: 583 KNWVPDEPVYGLLVDLWGKVGNVEKSWEWYQAMLNAGLCPNV 624


>gi|255569680|ref|XP_002525805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534892|gb|EEF36579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 182

 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 74/149 (49%)

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L  ++ +S     +V ++ L+  +   G L++ L+ ++E ++    L   +YNI++    
Sbjct: 12  LFKNLCASGHSPTTVIYITLLDGFCNQGHLDMALALFHEMQKNTLKLDCVAYNIIVDGMC 71

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           K GK  +A E F  +  EG  P+ RTY ++I+   N G L+ A +VF  +          
Sbjct: 72  KAGKLNDAKELFSTLPIEGLQPDVRTYNILIKVFCNEGSLEEAYQVFREMEEGGSLPDGC 131

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDG 272
            Y ++++GF+       A  L++EM D G
Sbjct: 132 SYNVIIQGFLRHNDLSGATQLIHEMIDKG 160



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 6/127 (4%)

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A E F+ +   G  P +  Y  +++   N G LD AL +F  +    +K     Y I+V+
Sbjct: 9   AHELFKNLCASGHSPTTVIYITLLDGFCNQGHLDMALALFHEMQKNTLKLDCVAYNIIVD 68

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREM-----LP 304
           G     + ++AK L + +  +G  P  R   + ++     G ++ A +  REM     LP
Sbjct: 69  GMCKAGKLNDAKELFSTLPIEGLQPDVRTYNILIKVFCNEGSLEEAYQVFREMEEGGSLP 128

Query: 305 DKRIKNV 311
           D    NV
Sbjct: 129 DGCSYNV 135



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 12/143 (8%)

Query: 423 ELVDRLIAKLRSDGMRLPFSTIRL-IIDFYGISKKADAALKAFHDDRTLCGPISKFKL-M 480
           EL   L A   S     P + I + ++D +      D AL  FH+ +      +  KL  
Sbjct: 11  ELFKNLCASGHS-----PTTVIYITLLDGFCNQGHLDMALALFHEMQK-----NTLKLDC 60

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           + Y+ ++  + K  +  DA  +   +   G+ PDV+T++ L+  F  +G  +   ++F  
Sbjct: 61  VAYNIIVDGMCKAGKLNDAKELFSTLPIEGLQPDVRTYNILIKVFCNEGSLEEAYQVFRE 120

Query: 541 VRQNGVEPDAYMFKVLIQAYCKY 563
           + + G  PD   + V+IQ + ++
Sbjct: 121 MEEGGSLPDGCSYNVIIQGFLRH 143


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 95/508 (18%), Positives = 199/508 (39%), Gaps = 50/508 (9%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           TL  LA  L    R  E    +  I    ++   V +  L++       +      +   
Sbjct: 128 TLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRM 187

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI------PNSRTYTVMIEHL 217
           ++     +  +Y  ++    +TG    A++  ++++++ +       P   TY+++I+ L
Sbjct: 188 QKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGL 247

Query: 218 VNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR 277
             +G+ D A E+F  +    +      Y  L+ GF    ++D++K L +EM D G  P  
Sbjct: 248 CKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDM 307

Query: 278 -AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAY 336
               V ++ + + G +  A + L  M+    + N+  Y    D      D N++  R  +
Sbjct: 308 VTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSA--RELF 365

Query: 337 GVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWV 396
                  L+P  ++ T         +L+      W  +    +                 
Sbjct: 366 LSMPSKGLEPDEISYT---------TLINGYCKTWKVKEAMNLYNEM------------- 403

Query: 397 AYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK 456
             Q G + +V     +L  L + G V    +L   +++ G+        + +D    +  
Sbjct: 404 -LQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDC 462

Query: 457 ADAALKAFHDDRTLCGPISKFKLMLL-YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
              A++ F++ ++       FKL +  YS L+  L K  +   A  + E++   G+ PDV
Sbjct: 463 LFEAMELFNELKSY-----NFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDV 517

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------Y 563
            T++ +++ F   G       LF  + +NG  PD   +  L+  +C+             
Sbjct: 518 VTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHK 577

Query: 564 LSNSNLMPDAATKELLKKSLWKEGRRKE 591
           +   ++ P+AA+  ++   L K+ + K+
Sbjct: 578 MVQKDVSPNAASCTIVVDMLCKDEKYKK 605



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 12/125 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           M+ +S L+ TL K  +  +A  +LE MI  GIVP++ T++ L+  F + GD    ++LF 
Sbjct: 307 MVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFL 366

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKY--------LSNSNLM----PDAATKELLKKSLWKEG 587
            +   G+EPD   +  LI  YCK         L N  L     P+  T   L K L+++G
Sbjct: 367 SMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKG 426

Query: 588 RRKEA 592
           +  +A
Sbjct: 427 KVGDA 431



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 49/231 (21%), Positives = 96/231 (41%), Gaps = 24/231 (10%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFS------TIRLIIDFYGIS 454
           G T +      ++  L + G+V +  +L  ++ +D  +   +      T  +IID     
Sbjct: 191 GCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKV 250

Query: 455 KKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD-AINVLEEMIFSGIVP 513
            + D A + F + +   G I     ++ YS+L+     C   +D + ++ +EM+  G+ P
Sbjct: 251 GREDEAKELFEEMKAQ-GMIPD---VISYSTLIHGFC-CAGKWDQSKHLFDEMVDQGVQP 305

Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY---------- 563
           D+ TFS L+     +G     +KL  ++ Q G+ P+   +  LI  +C            
Sbjct: 306 DMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELF 365

Query: 564 --LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRG 612
             + +  L PD  +   L     K  + KEA  +     ++   P++   G
Sbjct: 366 LSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYG 416


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 93/194 (47%), Gaps = 1/194 (0%)

Query: 75  ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFL 134
            L  A +A  AL +++ + +       + T   L   L K+      + L   +++S F 
Sbjct: 269 GLAKAGHAQEALKVLDNMLAKACVP-TEVTYGILVNSLCKAGTLERAEELFRVMAASGFR 327

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
             SV + +L+  ++ SG ++   S ++E  +        ++ +++    K+G   +A ++
Sbjct: 328 PNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKS 387

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
           F +++  G  PN  TYT +I+ L  +G++ +A  +   +        S  Y+ L++GF  
Sbjct: 388 FEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCK 447

Query: 255 VERFDEAKSLLNEM 268
           + R DEA  LL+E+
Sbjct: 448 LGRLDEAAQLLDEL 461



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 105/513 (20%), Positives = 189/513 (36%), Gaps = 46/513 (8%)

Query: 97  NFSHNQSTLH-ALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLEL 155
            F      LH A+   L K++R  E + + G +    F   ++ +  ++   + +G  + 
Sbjct: 219 GFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQE 278

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
            L   +    +A + +  +Y I+++   K G    A E FR +   G  PNS  YT +I 
Sbjct: 279 ALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIH 338

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                G++  A  +F  +     +     + ++++G      F++A     EM   G  P
Sbjct: 339 GFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKP 398

Query: 276 GRAMRVA-LERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRI 334
                   ++ + ++G +  A   ++ M+      +   Y    D             R+
Sbjct: 399 NVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLG-------RL 451

Query: 335 AYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFC 394
               QL   LD  + +  L  +S  +V+ L D   V  T     +   F+  + A     
Sbjct: 452 DEAAQLLDELDKCSSSPNLQLYS-SLVNGLCDGGSVEKT-----LDDLFEQSKAAAE--- 502

Query: 395 WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS 454
                PG    +      +  L + G ++   R+  ++ S+G +   +T  ++I+    S
Sbjct: 503 --TLDPGLCCSI------IVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRS 554

Query: 455 K--KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV 512
           +  + + A    HD       +      + Y+ L   L K      A+ +LEE    G  
Sbjct: 555 RENRVERAFALLHDLEK----VGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWN 610

Query: 513 PDVQTFSGLMYHFALQGDEKIVQKLFS-MVRQNGVEPDAYMFKVLIQAY---------CK 562
            DV  ++ L      QG       LF  MVRQ G  PDA  +  +I            CK
Sbjct: 611 ADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGA-PDAAAYCCIINGLIKVKKLEDACK 669

Query: 563 YLS---NSNLMPDAATKELLKKSLWKEGRRKEA 592
           +          P  AT   L ++L   G   EA
Sbjct: 670 FFDEMIGKGQKPTVATYTALVQALCHAGNVDEA 702



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 104/460 (22%), Positives = 180/460 (39%), Gaps = 60/460 (13%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           +T S+NI++  +A+T +  +AV  F  +  +   P+  T+ ++++ L   G  + A EVF
Sbjct: 153 NTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVF 212

Query: 231 SALPLMRIKRTSKQ-YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM--RVALERMQ 287
             +  M      +  +  +V   +  +R  EA+ +  +M   G FP  A+     ++ + 
Sbjct: 213 HEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCG-FPPDAIAYNTMIDGLA 271

Query: 288 EMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPK 347
           + G  Q A + L  ML    +                         + YG+ +       
Sbjct: 272 KAGHAQEALKVLDNMLAKACVPT----------------------EVTYGILVNSLCK-- 307

Query: 348 ALANTLDEWSPEVVSLLADAKF----VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYT 403
             A TL E + E+  ++A + F    V  T L+    +  +  E    F   V  + GY 
Sbjct: 308 --AGTL-ERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMV--EAGYR 362

Query: 404 HDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKA 463
            DV     M+  L + G+ E   +   ++   G +    T   II   G+SK    A  A
Sbjct: 363 PDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQ--GLSKIGRVA-NA 419

Query: 464 FHDDRTLCGPISK--FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL 521
           F   R + G I+   F   + Y  LL    K  R  +A  +L+E+      P++Q +S L
Sbjct: 420 F---RIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSL 476

Query: 522 MYHFALQGD-EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSN 568
           +      G  EK +  LF   +      D  +   +I   CK             + +  
Sbjct: 477 VNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEG 536

Query: 569 LMPDAATKELLKKSLW--KEGRRKEAAAVEERCEKINDVP 606
             PDA T  +L   L   +E R + A A+    EK+  +P
Sbjct: 537 CKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLP 576



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 92/232 (39%), Gaps = 21/232 (9%)

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           V  VLR  K   TA  FF W   Q G+ HDV+    ++ +L    +      +  ++   
Sbjct: 89  VAAVLRSLKVTGTAISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKA 148

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGP-ISKFKLMLLYSSLLRTLTKC 493
           G+     +  ++I  +  +++AD A+  F    R  C P +  F +      L+  L K 
Sbjct: 149 GIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLI------LVDCLCKA 202

Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE-KIVQKLFSMVRQNGVEPDAYM 552
             D  A  V  EM+  G VP  +     M    L+    K  +++F  + + G  PDA  
Sbjct: 203 GMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIA 262

Query: 553 FKVLI---------QAYCKYLSN---SNLMPDAATKELLKKSLWKEGRRKEA 592
           +  +I         Q   K L N      +P   T  +L  SL K G  + A
Sbjct: 263 YNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERA 314



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 93/453 (20%), Positives = 172/453 (37%), Gaps = 70/453 (15%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN +M++        +      +++  G  PN+ ++ ++I       + D A+  F  +
Sbjct: 121 TYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIM 180

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF-PGRAMRVALERMQEMGFI 292
              R K     +LILV+        ++A  + +EM   G   P RA+  A+         
Sbjct: 181 KRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAM--------- 231

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALA-N 351
                 +R +L  KR+K  R                       +G   K    P A+A N
Sbjct: 232 ------VRTLLKAKRVKEARE---------------------VFGQMEKCGFPPDAIAYN 264

Query: 352 TLDEW------SPEVVSLLAD--AKFVWTTRLVCKVLRH----FKSPETAWHFFCWVAYQ 399
           T+ +       + E + +L +  AK    T +   +L +      + E A   F  V   
Sbjct: 265 TMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELF-RVMAA 323

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
            G+  +      ++   A+ G ++    L  ++   G R    T  ++ID    S   + 
Sbjct: 324 SGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQ 383

Query: 460 ALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
           A K+F +  R  C P      ++ Y+++++ L+K  R  +A  +++ MI  G  PD  T+
Sbjct: 384 AAKSFEEMMRGGCKPN-----VVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTY 438

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPD------ 572
             L+  F   G      +L   + +    P+  ++  L+   C   S    + D      
Sbjct: 439 ICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSK 498

Query: 573 AATKEL-------LKKSLWKEGRRKEAAAVEER 598
           AA + L       +   L K GR  EA  + +R
Sbjct: 499 AAAETLDPGLCCSIIVGLCKTGRLDEACRIFQR 531



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 12/142 (8%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           ++Y+SL+    K  R  +A ++ +EM+ +G  PDV T + ++      G+ +   K F  
Sbjct: 331 VIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEE 390

Query: 541 VRQNGVEPDAYMFKVLIQAYCKYLSNSN------------LMPDAATKELLKKSLWKEGR 588
           + + G +P+   +  +IQ   K    +N              PD+ T   L     K GR
Sbjct: 391 MMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGR 450

Query: 589 RKEAAAVEERCEKINDVPSLAL 610
             EAA + +  +K +  P+L L
Sbjct: 451 LDEAAQLLDELDKCSSSPNLQL 472



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 84/218 (38%), Gaps = 6/218 (2%)

Query: 67  LDPFIVTH---ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT 123
           LDP +       L      D A  I + + S      + +T + L   L +S+ N   + 
Sbjct: 504 LDPGLCCSIIVGLCKTGRLDEACRIFQRMVSE-GCKPDATTYNILINGLCRSRENRVERA 562

Query: 124 --LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
             L+ D+    +L  +V +  L       G+++  +    E   R       +Y  + + 
Sbjct: 563 FALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTG 622

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
               G+   AV  F++++ +G  P++  Y  +I  L+ + KL+ A + F  +     K T
Sbjct: 623 LCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPT 682

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM 279
              Y  LV+        DEA      M   G+  G  M
Sbjct: 683 VATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVM 720



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 68/172 (39%), Gaps = 4/172 (2%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           A+    +M A    PN     S +H  A    KS R  E  +L  ++  + +    +   
Sbjct: 314 AEELFRVMAASGFRPNSVIYTSLIHGFA----KSGRMKEACSLFDEMVEAGYRPDVITHT 369

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            ++     SG+ E    ++ E  +     +  +Y  ++   +K G+   A    + +I  
Sbjct: 370 VMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAH 429

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
           G  P+S TY  +++    LG+LD A ++   L         + Y  LV G  
Sbjct: 430 GCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLC 481



 Score = 42.7 bits (99), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 13/137 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+  L   K       + EEM+ +GI P+  +F+ L+  FA           F +++
Sbjct: 122 YNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMK 181

Query: 543 QNGVEPDAYMFKVLIQAYCK-------------YLSNSNLMPDAATKELLKKSLWKEGRR 589
           +   +PD + F +L+   CK              ++   + PD A    + ++L K  R 
Sbjct: 182 RKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRV 241

Query: 590 KEAAAVEERCEKINDVP 606
           KEA  V  + EK    P
Sbjct: 242 KEAREVFGQMEKCGFPP 258


>gi|356530296|ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 830

 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 114/591 (19%), Positives = 225/591 (38%), Gaps = 84/591 (14%)

Query: 67  LDPFIVTHAL------RSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHE 120
           LDP +VT+ +      +   +    L +++ ++S      ++ T   + +   +     E
Sbjct: 247 LDPTLVTYNVMLDVYGKMGRSWGRILELLDEMRSK-GLEFDEFTCSTVISACGREGMLDE 305

Query: 121 LKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS 180
            +  + ++  + +   +V + +++Q +  +G     LS   E         + +YN + +
Sbjct: 306 ARKFLAELKLNGYKPGTVMYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSITYNELAA 365

Query: 181 VYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR 240
            Y + G   E +     +  +G +PN+ TYT +I+     G+ D AL +FS +  +    
Sbjct: 366 TYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAP 425

Query: 241 TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFL 299
               Y  ++       R ++   +L EM+ +G  P RA     L    E G     N+ L
Sbjct: 426 NVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVL 485

Query: 300 REML-----PDKRIKNV---RYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDP----- 346
           REM      PDK   N     Y   GS+ D  +           YG  +K    P     
Sbjct: 486 REMKNCGFEPDKDTFNTLISSYARCGSEVDSAK----------MYGEMVKSGFTPCVTTY 535

Query: 347 KALANTL---DEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYT 403
            AL N L    +W     S++ D +            + FK  ET++        + G  
Sbjct: 536 NALLNALAHRGDWK-AAESVIQDMQ-----------TKGFKPNETSYSLLLHCYSKAGNV 583

Query: 404 HDVYALEKML--------------TILARHG--HVELVDRLIAKLRSDGMRLPFSTIRLI 447
             +  +EK +               +L+ H   H+  ++R   +L+  G +     I  +
Sbjct: 584 RGIEKVEKEIYDGQVFPSWILLRTLVLSNHKCRHLRGMERAFDQLQKYGYKPDLVVINSM 643

Query: 448 IDFYGISK---KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLE 504
           +  +  +K   KA   L   H+    CG       +  Y+ L+    +    + A  VL+
Sbjct: 644 LSMFSRNKMFSKAREMLHFIHE----CGLQPN---LFTYNCLMDLYVREDECWKAEEVLK 696

Query: 505 EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC--- 561
            +  S   PDV +++ ++  F  +G  +   ++ S +   G++P    +   +  Y    
Sbjct: 697 GIQNSVPEPDVVSYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQPTIVTYNTFLSGYAGME 756

Query: 562 ---------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIN 603
                    +++   N  P   T ++L     K G+ +EA     + ++I+
Sbjct: 757 LFDEANEVIRFMIEHNCRPSELTYKILVDGYCKAGKHEEAMDFVTKIKEID 807



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 88/408 (21%), Positives = 163/408 (39%), Gaps = 57/408 (13%)

Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           L   +Y  ++  YA++GK   A++ F ++   G  P   TY VM++    +G+  S   +
Sbjct: 214 LDVRAYTTILHAYARSGKYKRAIDLFDKMEGIGLDPTLVTYNVMLDVYGKMGR--SWGRI 271

Query: 230 FSALPLMRIK-----RTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVAL 283
              L  MR K       +   +I   G  G+   DEA+  L E++ +G  PG  M    L
Sbjct: 272 LELLDEMRSKGLEFDEFTCSTVISACGREGM--LDEARKFLAELKLNGYKPGTVMYNSML 329

Query: 284 ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPW 343
           +   + G    A   L+EM                   ED N   +S   I Y      +
Sbjct: 330 QVFGKAGIYTEALSILKEM-------------------EDNNCPPDS---ITYNELAATY 367

Query: 344 LDPKALANTLDEWSPEVVSLLADA----KFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQ 399
           +     A  LDE    + ++ +         +TT  V          + A   F  +   
Sbjct: 368 VR----AGFLDEGMAVIDTMTSKGVMPNAITYTT--VIDAYGKAGREDDALRLFSKMK-D 420

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM---RLPFSTIRLIIDFYGISKK 456
            G   +VY    +L +L +    E V +++ +++ +G    R  ++T+  +    G    
Sbjct: 421 LGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNY 480

Query: 457 ADAALKAFHDDRTLCG--PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
            +  L+   +    CG  P         +++L+ +  +C  + D+  +  EM+ SG  P 
Sbjct: 481 VNKVLREMKN----CGFEPDKD-----TFNTLISSYARCGSEVDSAKMYGEMVKSGFTPC 531

Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           V T++ L+   A +GD K  + +   ++  G +P+   + +L+  Y K
Sbjct: 532 VTTYNALLNALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYSK 579


>gi|225439358|ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g06400, mitochondrial-like [Vitis vinifera]
          Length = 1048

 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 111/247 (44%), Gaps = 21/247 (8%)

Query: 364 LADAKFVWTTRLVCKVL-RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHV 422
           L  + FV+ + +V KVL R FK P  A  FF WV ++ G  H       ML I       
Sbjct: 162 LEKSGFVFDSEVVEKVLKRCFKVPHLALRFFNWVKFRNGGCHTTRTYNTMLYIAGEAKEF 221

Query: 423 ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDD-RTLCGPISKFKLML 481
            LV++LI ++   G +    T  ++I  YG +K    AL       ++ C P      + 
Sbjct: 222 GLVEKLIGEMEEKGCKRDIKTWTILISHYGKAKLIGKALLILEKMWKSGCEPD-----VA 276

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF-SM 540
            Y  L+R+L   ++   A+   +EM+   +  D+  +  L+   A  GD   VQ +   M
Sbjct: 277 AYMILIRSLCNAQKADIALEFYKEMVQKEMGLDMSLYELLLTCLAGSGDIAGVQLVADDM 336

Query: 541 VRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGR 588
           +R++ + P+  +F  +++++C            + L++ NL  +    E L K L +  R
Sbjct: 337 IRRSQI-PERDVFSCMLKSFCIAGRIREALELIRDLNDKNLTLEPNDFETLVKGLCRADR 395

Query: 589 RKEAAAV 595
             +AA +
Sbjct: 396 ITDAAEI 402



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 91/482 (18%), Positives = 182/482 (37%), Gaps = 62/482 (12%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           +L  F +   +R A      L ++  L ++ N +   +    L   L ++ R  +   ++
Sbjct: 351 MLKSFCIAGRIREA------LELIRDL-NDKNLTLEPNDFETLVKGLCRADRITDAAEIV 403

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
             +   K ++  V +  ++  Y    D+           +   L +  +Y  +M    + 
Sbjct: 404 DIMKKRKVVDAKV-YGIIISGYLRRNDIPKAFDVLQTMTESGYLPTISTYTELMQHLFRL 462

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
            +  +  + + ++++ G  P+S   T M+   V    +  A +VF+++    I+ T K Y
Sbjct: 463 NEYQKGCKLYDEMLERGVEPDSVAITAMVAGHVRQNHIFEAWKVFNSMQERGIRATWKSY 522

Query: 246 LILVEGFVGVERFDEAKSLLNEMRD-----------------DGKFPGRAMRVALERMQE 288
            + ++    + R DE   +LNEM+                  + K     ++  ++  + 
Sbjct: 523 SVFIKELCKISRTDEVIKVLNEMQASKIIIGDEVFNWVISYLEKKGETEMVKKVMQMQRT 582

Query: 289 MGFIQGANEFLREMLPDKRIKNVRY----YEDGSDD--------DEDENDDNNSGVRIAY 336
             F    +E    ++P +++ N+ +     E G  D              D     RI  
Sbjct: 583 CKFYPQEHEASGSIVPKRQLHNLDFNFNQLESGRMDLHLVEHLPKTYNEQDLQEICRI-- 640

Query: 337 GVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFK-SPETAWHFFCW 395
                       L+ ++D W   +   L      +T++LV ++LR        A  FF W
Sbjct: 641 ------------LSTSMD-WCL-IEEALEKCTVQFTSQLVVEILRSCSLHGHAALLFFSW 686

Query: 396 VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455
           V  + GY+H        + I     +   +  L  ++R  G  +   T  ++I  YG + 
Sbjct: 687 VGKRDGYSHTTETYNMGIKISGCSKNFRSMRNLFFEMRRKGHPVTPDTWTIMIMQYGRAG 746

Query: 456 KADAALKAFHDDRTL-CGPISKFKLMLLYSSLLRTLT--KCKRDFDAINVLEEMIFSGIV 512
             + AL+ F + +   C P         Y  L+  L   K ++  +AI    EMI +G V
Sbjct: 747 LTEIALRNFAEMKANDCKPNGS-----TYKYLIICLCGRKGRKVDEAIKTFLEMIRAGYV 801

Query: 513 PD 514
           PD
Sbjct: 802 PD 803



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 71/164 (43%)

Query: 112  LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
            L ++ R  E   L+ ++   +       + +L+      G L+  L   +  +Q     +
Sbjct: 848  LCRAGRLEEALALVDEVGPERVTLDQYIYGSLVHGLLRRGRLKEALEKVDSMKQIGIHPT 907

Query: 172  TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
               Y  ++  + K  +  +A+ETF+++ +EG  P   TY+ +I   + +G    A  VF 
Sbjct: 908  VHVYTSLIVHFFKEKQMRKALETFQKMKEEGCEPTIVTYSALIRGHMAMGNFVDARNVFG 967

Query: 232  ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             L L       K Y + +     V + +EA  LL+EM D G  P
Sbjct: 968  LLQLKGPFPDFKTYSMFISCLCKVGKSEEALQLLSEMLDSGIIP 1011



 Score = 42.4 bits (98), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 82/206 (39%), Gaps = 17/206 (8%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           + GY  D   +E  L  L   G +    R    L   G  +P S   L I     + + +
Sbjct: 797 RAGYVPDKELVESYLKCLCEVGKLLDARRCTEALCKLGFTIPLS-YSLYIRALCRAGRLE 855

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
            AL A  D+    GP        +Y SL+  L +  R  +A+  ++ M   GI P V  +
Sbjct: 856 EAL-ALVDE---VGPERVTLDQYIYGSLVHGLLRRGRLKEALEKVDSMKQIGIHPTVHVY 911

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC---KYLSNSNL------ 569
           + L+ HF  +   +   + F  +++ G EP    +  LI+ +     ++   N+      
Sbjct: 912 TSLIVHFFKEKQMRKALETFQKMKEEGCEPTIVTYSALIRGHMAMGNFVDARNVFGLLQL 971

Query: 570 ---MPDAATKELLKKSLWKEGRRKEA 592
               PD  T  +    L K G+ +EA
Sbjct: 972 KGPFPDFKTYSMFISCLCKVGKSEEA 997


>gi|255580475|ref|XP_002531063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529358|gb|EEF31324.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 96/207 (46%), Gaps = 12/207 (5%)

Query: 360 VVSLLADAKFVWTTRLVCKVLRHFKSPET-AWHFFCWVAYQPGYTHDVYALEKMLTILAR 418
           +  LL  A F  +  LV +VL+   +    A  FF W   Q G+ ++  +   ++  L +
Sbjct: 100 IEKLLLGASFKVSPALVLEVLKRLSNAGALALSFFKWAEKQKGFMYNTESYNALIDSLGK 159

Query: 419 HGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFK 478
                ++  L+  ++  G+ L   T  LI   Y  S K   A+  F         + KF 
Sbjct: 160 IKQFNMIWNLVNDMKRKGV-LTKETFALISRRYARSGKVKEAMNTFEK-------MEKFG 211

Query: 479 LMLL---YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ 535
           L +    ++ LL TL K ++   A NV ++M     VPD+++++ L+  +  + +   + 
Sbjct: 212 LKIESTDFNRLLDTLIKSRQVLSAQNVFDKMKIRRFVPDIKSYTILLEGWGQEKNLLKLD 271

Query: 536 KLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           +++  ++  G EPD   + +LI AYCK
Sbjct: 272 EVYREMKDEGFEPDVVTYGILINAYCK 298



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 103/545 (18%), Positives = 205/545 (37%), Gaps = 88/545 (16%)

Query: 79  APNADSALSIMEALKSNPNFSHNQ--STLHALATVLAKSQRNHELKTLIGDISSSKFLNV 136
           +P+ +   SI   L+ NP    ++       +  +L+K+  +   K L+G    + F   
Sbjct: 57  SPHLNFQRSIHADLEQNPEIFTDKIIEDTRNICRLLSKNPNSSIEKLLLG----ASFKVS 112

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
               + +++  S +G L L    W E +Q+  + +TESYN ++    K  K F  +    
Sbjct: 113 PALVLEVLKRLSNAGALALSFFKWAE-KQKGFMYNTESYNALIDSLGKI-KQFNMIWNLV 170

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
             +    +    T+ ++       GK+  A+  F  +    +K  S  +  L++  +   
Sbjct: 171 NDMKRKGVLTKETFALISRRYARSGKVKEAMNTFEKMEKFGLKIESTDFNRLLDTLIKSR 230

Query: 257 RFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
           +   A+++ ++M+     P  ++  + LE   +   +   +E  REM             
Sbjct: 231 QVLSAQNVFDKMKIRRFVPDIKSYTILLEGWGQEKNLLKLDEVYREM------------- 277

Query: 316 DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL 375
               D+  E D    G+ I    +++ + D   L   ++                     
Sbjct: 278 ---KDEGFEPDVVTYGILINAYCKVRKYDDAIELFREMES-------------------- 314

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
                   K+ + + H FC +    G    V  L + L    R              ++ 
Sbjct: 315 --------KNCQPSPHIFCTLINGLG---SVRRLSEALEFFRRS-------------KAS 350

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDR-TLCGPISKFKLMLLYSSLLRTLTKCK 494
           G      T   ++  Y  S + D A +   + R +  GP S+      Y  +L  L K +
Sbjct: 351 GFAPETPTYNAVVGAYCWSMRIDDAYRMVDEMRKSGVGPNSR-----TYDIILHHLIKAE 405

Query: 495 RDFDAINVLEEMIFSG-IVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
           +  +A +V E+M       P V T+  ++  F      +   K++  ++  GV P  +MF
Sbjct: 406 KTTEAFSVFEKMSSEEECEPTVSTYDIIVRMFCNMDKVESAIKVWDRMKAKGVHPGMHMF 465

Query: 554 KVLIQAY---------CKYLS---NSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEK 601
            +LI +          CKY     +  + P AA    LK++L ++GR+     + ++ +K
Sbjct: 466 SILINSLCHENKLDIACKYFQEMLDVGIRPPAALFSHLKQALIEDGRKDTVVLLAQKIDK 525

Query: 602 INDVP 606
           +   P
Sbjct: 526 LRKTP 530



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 103/243 (42%), Gaps = 46/243 (18%)

Query: 41  QLIDSIRLAVRSNSSNSLSSLLNDRLL-------DPFIVTHALRSAPNADS-ALSIMEAL 92
           ++I+  R   R  S N  SS+  ++LL        P +V   L+   NA + ALS  +  
Sbjct: 80  KIIEDTRNICRLLSKNPNSSI--EKLLLGASFKVSPALVLEVLKRLSNAGALALSFFKWA 137

Query: 93  KSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD 152
           +    F +N  + +AL   L K ++ + +  L+ D+                        
Sbjct: 138 EKQKGFMYNTESYNALIDSLGKIKQFNMIWNLVNDM------------------------ 173

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
                       +R  +L+ E++ ++   YA++GK  EA+ TF ++   G    S  +  
Sbjct: 174 ------------KRKGVLTKETFALISRRYARSGKVKEAMNTFEKMEKFGLKIESTDFNR 221

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +++ L+   ++ SA  VF  + + R     K Y IL+EG+   +   +   +  EM+D+G
Sbjct: 222 LLDTLIKSRQVLSAQNVFDKMKIRRFVPDIKSYTILLEGWGQEKNLLKLDEVYREMKDEG 281

Query: 273 KFP 275
             P
Sbjct: 282 FEP 284



 Score = 43.1 bits (100), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 46/227 (20%), Positives = 91/227 (40%), Gaps = 13/227 (5%)

Query: 62  LNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATV---LA 113
           + D   +P +VT+     A       D A+ +   ++S     + Q + H   T+   L 
Sbjct: 277 MKDEGFEPDVVTYGILINAYCKVRKYDDAIELFREMESK----NCQPSPHIFCTLINGLG 332

Query: 114 KSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE 173
             +R  E         +S F   +  +  ++  Y  S  ++      +E R+     ++ 
Sbjct: 333 SVRRLSEALEFFRRSKASGFAPETPTYNAVVGAYCWSMRIDDAYRMVDEMRKSGVGPNSR 392

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVI-DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           +Y+I++    K  K  EA   F ++  +E   P   TY +++    N+ K++SA++V+  
Sbjct: 393 TYDIILHHLIKAEKTTEAFSVFEKMSSEEECEPTVSTYDIIVRMFCNMDKVESAIKVWDR 452

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM 279
           +    +      + IL+       + D A     EM D G  P  A+
Sbjct: 453 MKAKGVHPGMHMFSILINSLCHENKLDIACKYFQEMLDVGIRPPAAL 499


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 106/243 (43%), Gaps = 18/243 (7%)

Query: 380 LRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
           +R    P+ A  FF W   Q GY HDV++   +L IL + GH     ++   L   G   
Sbjct: 1   MRRSSRPDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSP 60

Query: 440 PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDA 499
              T +++I     + KA  A++A    R L    S    + +++ L+  L K      A
Sbjct: 61  NLVTFKILIRG---NCKAGQAMRALEFLRAL-DEFSVAPDVYIFNVLIHGLFKDGNPDQA 116

Query: 500 INVLEEMIFSGIVPDVQTFSGLMYHFALQGD-EKIVQKLFSMVRQNG-VEPDAYMFKVLI 557
           + + E M  S + P++ T++ ++      G+ EK  + L  M+R+ G   PD   +  LI
Sbjct: 117 VKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLI 176

Query: 558 QAY---------CKY---LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDV 605
            A+         C +   +  + + PD  T  +L   + K+G  +EA  + +  +    V
Sbjct: 177 NAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPV 236

Query: 606 PSL 608
           P +
Sbjct: 237 PDV 239



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 10/210 (4%)

Query: 62  LNDRLLDPFIVTHALRSAPNADSALSIMEALK---SNPNFSHNQSTLHALATVLAKSQRN 118
           +N  +L   I+   +    + + AL I++ +K     P+     S +HAL       +  
Sbjct: 200 INPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAA 259

Query: 119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV 178
             LKT+    S S  L   V F  L+  +  +G L   L    E  +   L    +Y I+
Sbjct: 260 EILKTM----SCSPDL---VTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTIL 312

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI 238
           ++   + G+   A     +++ +G IP+   YT +++ L   G+++ A ++   + +   
Sbjct: 313 VNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGC 372

Query: 239 KRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           +     Y  LV G+       +A+ +L EM
Sbjct: 373 RTGVVMYSSLVSGYCRAGNVHKAREILAEM 402



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 63/152 (41%)

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L+ +I    ++   + + +L+     SG++E       E   R        Y+ ++S Y 
Sbjct: 328 LLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYC 387

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           + G   +A E   +++    +P   TY +++  L+  G +  A+ + S L          
Sbjct: 388 RAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVV 447

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            Y  L++G     R  EA  L +EM   G FP
Sbjct: 448 TYNTLIDGLCKANRVREACDLADEMASRGCFP 479



 Score = 45.8 bits (107), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 4/161 (2%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+      GD+E  L   +  +    +    +YN ++      GK  EA E  + +    
Sbjct: 210 LVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTM---S 266

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  T+  +++     G L  ALEV   +    I      Y ILV G   V +   A 
Sbjct: 267 CSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAF 326

Query: 263 SLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREM 302
            LL E+   G  P      +L + + + G I+ A++ ++EM
Sbjct: 327 YLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEM 367



 Score = 44.3 bits (103), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 25/177 (14%)

Query: 431 KLRSDGMRLPFSTIRLIIDFYGISKKADA--ALKAFHDDRTLCGPISKFKLMLLYSSLLR 488
           K+++ G+     T  +++   GI K  D   AL+   D   L GP+     ++ Y+S++ 
Sbjct: 194 KMKAAGINPDVLTCNILVS--GICKDGDVEEALEIL-DGMKLAGPVPD---VITYNSIIH 247

Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD-EKIVQKLFSMVRQNGVE 547
            L    +  +A  +L+ M  S   PD+ TF+ L+  F   G   + ++ L  M R+N + 
Sbjct: 248 ALCVAGKVVEAAEILKTMSCS---PDLVTFNTLLDGFCKAGMLPRALEVLEEMCREN-IL 303

Query: 548 PDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           PD   + +L+   C+             +     +PD      L   L K G  +EA
Sbjct: 304 PDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEA 360



 Score = 42.7 bits (99), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 40/205 (19%), Positives = 81/205 (39%), Gaps = 6/205 (2%)

Query: 107 ALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR 166
           +L +   ++   H+ + ++ ++ S   +     +  ++      G +   +S  ++   R
Sbjct: 381 SLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVAR 440

Query: 167 AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
             +    +YN ++    K  +  EA +   ++   G  PN  T   ++  L  +G++D A
Sbjct: 441 GYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDA 500

Query: 227 LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALER 285
             +   +   R       Y  L++G    +R D+A  +L+ MR  G      A R  +  
Sbjct: 501 WSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVS 560

Query: 286 MQEMGFIQGANEFLREM-----LPD 305
           M   G +  A     EM     LPD
Sbjct: 561 MSHGGRVAEAMAMYDEMVARGFLPD 585



 Score = 42.0 bits (97), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 1/131 (0%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SYN ++ +  K+G +F   + ++ ++  G  PN  T+ ++I      G+   ALE   AL
Sbjct: 29  SYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRALEFLRAL 88

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFI 292
               +      + +L+ G       D+A  L   M      P        +  + + G +
Sbjct: 89  DEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSGNL 148

Query: 293 QGANEFLREML 303
           + A E L EM+
Sbjct: 149 EKARELLEEMI 159



 Score = 40.8 bits (94), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 30/147 (20%), Positives = 62/147 (42%), Gaps = 21/147 (14%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y+ L+  L +  +   A  +LEE++  G +PDV  ++ L+      G+ +   KL  
Sbjct: 306 VITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVK 365

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEG 587
            +   G      M+  L+  YC+             + + N++P   T  ++   L K+G
Sbjct: 366 EMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDG 425

Query: 588 RRKEAAAVEERCEKINDVPSLALRGHI 614
              +A ++         +  L  RG++
Sbjct: 426 SISKAVSL---------ISDLVARGYV 443



 Score = 40.0 bits (92), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 11/139 (7%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y++L+    +  R  +A    E+M  +GI PDV T + L+      GD +   ++  
Sbjct: 169 IVTYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILD 228

Query: 540 MVRQNGVEPDAYMFKVLIQAYC---------KYLSNSNLMPDAATKELLKKSLWKEGRRK 590
            ++  G  PD   +  +I A C         + L   +  PD  T   L     K G   
Sbjct: 229 GMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMSCSPDLVTFNTLLDGFCKAGMLP 288

Query: 591 EAAAV-EERCEKINDVPSL 608
            A  V EE C + N +P +
Sbjct: 289 RALEVLEEMCRE-NILPDV 306


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 78/371 (21%), Positives = 150/371 (40%), Gaps = 28/371 (7%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
           N   N  T + +   L K  R  E K L  ++ +   +   +++ +L+  +  +G  E  
Sbjct: 210 NCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEES 269

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
               +E   +       ++N+++    K GK  EA +    +I+ G +P+  TY  +IE 
Sbjct: 270 KRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEG 329

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
              +G L+SA E+F ++P    +     Y +L+ G+    + +EA  L NEM   GK P 
Sbjct: 330 FCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPN 389

Query: 277 RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAY 336
               +  + + +  F+ G  +  +++    +   +            EN          Y
Sbjct: 390 ---VITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIA-----------ENS-------YTY 428

Query: 337 GVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSP--ETAWHFFC 394
           G+    +LD     + L E       L +    +    L C +    K+   ETAW  F 
Sbjct: 429 GI----FLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFE 484

Query: 395 WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS 454
            ++ + G+  +V     M+    R G V+  + LI K+ ++G      T   ++  +  S
Sbjct: 485 KLSNE-GHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYES 543

Query: 455 KKADAALKAFH 465
            K +  ++  H
Sbjct: 544 NKLEEVVQLLH 554



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 12/125 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           M+ ++ L+ TL K  +  +A  +L  MI SGIVPD+ T++ L+  F + GD    ++LF 
Sbjct: 285 MVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFV 344

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM------------PDAATKELLKKSLWKEG 587
            +   G EPD   + VLI  Y K L     M            P+  T + L K ++  G
Sbjct: 345 SMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAG 404

Query: 588 RRKEA 592
           +  +A
Sbjct: 405 KVDDA 409



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 76/167 (45%), Gaps = 8/167 (4%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           GY+ ++     ++  L     +    RL  +++  G      T   +I     +   + A
Sbjct: 134 GYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIA 193

Query: 461 LKAFHDDRTLCGPISKFKL-----MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
           LK   +   +   IS++++     ++ Y+ ++  L K  R+ +A  + EEM   G++P +
Sbjct: 194 LKLHQE---MLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSI 250

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            +++ L++ F   G  +  ++L   +   G++PD   F VLI   CK
Sbjct: 251 ISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCK 297



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 76/398 (19%), Positives = 153/398 (38%), Gaps = 34/398 (8%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           S  S+N ++S  AK     +    + Q+   G   +  T  +++  L N+ +L      F
Sbjct: 68  SLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAF 127

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEM 289
           + +           Y  L++G     R  EA  L   M+  G  P       L + +   
Sbjct: 128 AGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGT 187

Query: 290 GFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGV----RIAYGVQLKPWLD 345
           G I  A +  +EML D     +  YE     +    +    G+    R     QL   + 
Sbjct: 188 GNINIALKLHQEMLND-----ISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMK 242

Query: 346 PKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHD 405
            + +  ++  ++  +       K+  + RL+ ++L                  QP    D
Sbjct: 243 TQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQ--------------GLQP----D 284

Query: 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465
           +     ++  L + G V    +L+  +   G+     T   +I+ + +    ++A + F 
Sbjct: 285 MVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFV 344

Query: 466 D-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
                 C P      ++ Y+ L+   +K  +  +A+ +  EM+  G  P+V T+  L+  
Sbjct: 345 SMPSKGCEPD-----VISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKG 399

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
             L G     +KLFS+++ +G+  ++Y + + +   CK
Sbjct: 400 IFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCK 437



 Score = 43.9 bits (102), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 44/99 (44%)

Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           L  E+ N ++    K GK   A E F ++ +EG  PN  TYT+MI      G++D A  +
Sbjct: 458 LEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVL 517

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
              +           Y  L+ GF    + +E   LL+ M
Sbjct: 518 IQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRM 556



 Score = 42.4 bits (98), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 109/590 (18%), Positives = 207/590 (35%), Gaps = 89/590 (15%)

Query: 48  LAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHA 107
           +A  SN+  S SS+ N  L   F  + A+ S PN   A  +      N   +H     H 
Sbjct: 1   MASTSNTVPSASSIRNSNLSSLFTHSSAIPS-PNPQIAFFLRHCKTGNVTATHALHFFH- 58

Query: 108 LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA 167
              ++ +S     L +                F +L+   +       V S +N+ R   
Sbjct: 59  ---LMMRSTPTPSLSS----------------FNHLLSGLAKIKHYSQVFSLYNQMRLSG 99

Query: 168 KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227
                 + NI+++      +  E    F  ++  G  PN  TY  +I+ L    ++  A 
Sbjct: 100 LSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEAT 159

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD-------GKFPGRAMR 280
            +F  +  +        Y  L++G  G    + A  L  EM +D        K       
Sbjct: 160 RLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYN 219

Query: 281 VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQL 340
           + ++ + ++G    A +   EM     I ++  Y              NS +   +    
Sbjct: 220 IIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISY--------------NSLIH-GFCCAG 264

Query: 341 KPWLDPKALAN-TLDE-WSPEVV-------SLLADAKFVWTTRLVCKVLRHFKSPETAWH 391
           K W + K L +  LD+   P++V       +L  + K +   +L+               
Sbjct: 265 K-WEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLL--------------- 308

Query: 392 FFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY 451
               V  + G   D+     ++      G +     L   + S G      +  ++I+ Y
Sbjct: 309 ---GVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGY 365

Query: 452 GISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
             + K + A+K +++       + K   ++ Y SLL+ +    +  DA  +   M   GI
Sbjct: 366 SKTLKVEEAMKLYNEMLL----VGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGI 421

Query: 512 VPDVQTFSGLMYHFALQGDEKI-VQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------- 563
             +  T+ G+      + D      KLF+ ++ +  + +      LI   CK        
Sbjct: 422 AENSYTY-GIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAW 480

Query: 564 -----LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
                LSN    P+  T  ++     +EG+  +A  + ++ E     P +
Sbjct: 481 ELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDI 530


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 106/246 (43%), Gaps = 11/246 (4%)

Query: 65  RLLDPFIVTHALRSAPNA-------DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR 117
           R +DP I T++  S  N        D A  + E + S   F  N  T + L     K++R
Sbjct: 338 RSIDPDIFTYS--SLINGFCMHDRLDEAKHMFELMISKDCFP-NVVTYNTLIKGFCKAKR 394

Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI 177
             E   L  ++S    +  +V +  L+Q    +GD ++    + +           +Y+I
Sbjct: 395 VEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSI 454

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           ++    K GK  +A+  F  +      P+  TY +MIE +   GK++   ++F +L L  
Sbjct: 455 LLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 514

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQ-EMGFIQGAN 296
           +K     Y  ++ GF      +EA +L  EM++DG  P       L R +   G    + 
Sbjct: 515 VKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASA 574

Query: 297 EFLREM 302
           E ++EM
Sbjct: 575 ELIKEM 580



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 88/484 (18%), Positives = 193/484 (39%), Gaps = 46/484 (9%)

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L G++  S+ L   V F  L+   +     +LV+S     +         SYNI+++ + 
Sbjct: 51  LFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFC 110

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           +  +   A+    +++  G  P+  T + ++    +  ++  A+ +   + +M  +  + 
Sbjct: 111 RRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTV 170

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREM 302
            +  L+ G     +  EA +L++ M   G  P        +  + + G I  A   L++M
Sbjct: 171 TFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM 230

Query: 303 LPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVS 362
              K   +V  Y    D   +  + N++       + L   +D K +   +  ++  +  
Sbjct: 231 EKGKIEADVVIYTTIIDALCNYKNVNDA-------LNLFTEMDNKGIRPNVVTYNSLIRC 283

Query: 363 LLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHV 422
           L    ++   +RL+  ++    +P                  +V     ++    + G +
Sbjct: 284 LCNYGRWSDASRLLSDMIERKINP------------------NVVTFSALIDAFVKEGKL 325

Query: 423 ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK--FKLM 480
              ++L  ++    +     T   +I+ + +  + D A   F         ISK  F  +
Sbjct: 326 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE------LMISKDCFPNV 379

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           + Y++L++   K KR  + + +  EM   G+V +  T++ L+      GD  + QK+F  
Sbjct: 380 VTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKK 439

Query: 541 VRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGR 588
           +  +GV PD   + +L+   CK            YL  S + PD  T  ++ + + K G+
Sbjct: 440 MVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGK 499

Query: 589 RKEA 592
            ++ 
Sbjct: 500 VEDG 503



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 83/204 (40%), Gaps = 1/204 (0%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           +  AL +  N + AL++   +  N     N  T ++L   L    R  +   L+ D+   
Sbjct: 245 IIDALCNYKNVNDALNLFTEM-DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIER 303

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
           K     V F  L+  +   G L      ++E  +R+      +Y+ +++ +    +  EA
Sbjct: 304 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 363

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
              F  +I +   PN  TY  +I+      +++  +E+F  +    +   +  Y  L++G
Sbjct: 364 KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQG 423

Query: 252 FVGVERFDEAKSLLNEMRDDGKFP 275
                  D A+ +  +M  DG  P
Sbjct: 424 LFQAGDCDMAQKIFKKMVSDGVPP 447



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 37/203 (18%), Positives = 85/203 (41%), Gaps = 16/203 (7%)

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALK 462
           ++D+Y+   ++    R   + L   ++ K+   G      T+  +++ Y   K+   A+ 
Sbjct: 96  SYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAV- 154

Query: 463 AFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
           A  D   +   +      + +++L+  L    +  +A+ +++ M+  G  PD+ T+  ++
Sbjct: 155 ALVDQMFV---MEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVV 211

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLM 570
                +GD  +   L   + +  +E D  ++  +I A C Y            + N  + 
Sbjct: 212 NGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIR 271

Query: 571 PDAATKELLKKSLWKEGRRKEAA 593
           P+  T   L + L   GR  +A+
Sbjct: 272 PNVVTYNSLIRCLCNYGRWSDAS 294


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 104/500 (20%), Positives = 196/500 (39%), Gaps = 43/500 (8%)

Query: 88  IMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWY 147
           + EA+K   +   N  T   L     KS    E   L+ ++           + +L+  +
Sbjct: 171 LFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLISAF 230

Query: 148 STSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNS 207
              GD+E     ++E  +R    +  +Y+ +M    +TG+  EA E  + +   G  P+ 
Sbjct: 231 CGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDV 290

Query: 208 RTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNE 267
             YTV+ + L   G+   A++V   +     +  +  Y ++V G    +R D+A  ++  
Sbjct: 291 VAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEM 350

Query: 268 MRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREMLPDK----------------RIKN 310
           M   GK P        L+ +   G I  A +  + +L +K                  K 
Sbjct: 351 MVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKE 410

Query: 311 VRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFV 370
            R + D +       +    G  + Y   ++ +L  + L   L  W   V S  +     
Sbjct: 411 GRVH-DAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPNSMT 469

Query: 371 WTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRL 428
           ++  +  +CK+    +    A   FC +    G    V     ++T L R   +E    L
Sbjct: 470 YSVMINGLCKM----QMLSVARGLFCKMK-DSGIRPTVIDYNALMTSLCREDSLEQARSL 524

Query: 429 IAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLL------ 482
             ++R+    +   +  +II         D  LKA  D ++    +S+  +M L      
Sbjct: 525 FQEMRNVNHNVDVVSFNIII---------DGTLKA-GDVKSAKELLSEMFMMDLVPDAVT 574

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD-EKIVQKLFSMV 541
           +S L+   +K     +A+ + E+M+  G VP V  F  L+  + L+G+ EKI+  L  M 
Sbjct: 575 FSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLKGYGLKGETEKIISLLHQMA 634

Query: 542 RQNGVEPDAYMFKVLIQAYC 561
            ++ V  D+ +   ++   C
Sbjct: 635 DKD-VVLDSKLTSTILACLC 653



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 101/239 (42%), Gaps = 10/239 (4%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           +V + L      D A  ++E +        +  T + L   L  + + HE   L   + S
Sbjct: 330 VVVNGLCKEDRMDDAFGVVEMMVKKGK-KPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLS 388

Query: 131 SKFLNVSVNFM--NLMQWYSTSG---DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
            KF      F   NL+Q     G   D   + S+  E   +  +++   YN ++  Y   
Sbjct: 389 EKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVT---YNFLIEGYLAA 445

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
            K  EA++ ++  ++ G  PNS TY+VMI  L  +  L  A  +F  +    I+ T   Y
Sbjct: 446 RKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDY 505

Query: 246 LILVEGFVGVERFDEAKSLLNEMRD-DGKFPGRAMRVALERMQEMGFIQGANEFLREML 303
             L+      +  ++A+SL  EMR+ +      +  + ++   + G ++ A E L EM 
Sbjct: 506 NALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMF 564



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 96/464 (20%), Positives = 167/464 (35%), Gaps = 68/464 (14%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y++++  Y K+G+  E +    ++  EG   +   Y+ +I      G +++  E+F  +
Sbjct: 187 TYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLISAFCGEGDIETGRELFDEM 246

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
              ++      Y  L++G     R+ EA  +L +M   G  P   A  V  + + + G  
Sbjct: 247 LRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRA 306

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDD--DEDENDDNNSGVR-----------IAYGVQ 339
             A + L  M+          Y    +    ED  DD    V            + Y   
Sbjct: 307 GDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTL 366

Query: 340 LKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQ 399
           LK       +   +D W      LL   KF            H K               
Sbjct: 367 LKGLCGAGKIHEAMDLWK-----LLLSEKF------------HVKP-------------- 395

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
                DV+    ++  L + G V    R+ + +   G++    T   +I+ Y  ++K   
Sbjct: 396 -----DVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIE 450

Query: 460 ALKAF-HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
           ALK + +   +   P S     + YS ++  L K +    A  +  +M  SGI P V  +
Sbjct: 451 ALKLWKYAVESGFSPNS-----MTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDY 505

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK---------YLSNS-- 567
           + LM     +   +  + LF  +R      D   F ++I    K          LS    
Sbjct: 506 NALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFM 565

Query: 568 -NLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLAL 610
            +L+PDA T  +L     K G   EA  + E+      VP + +
Sbjct: 566 MDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVV 609



 Score = 45.8 bits (107), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 90/215 (41%), Gaps = 29/215 (13%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRS--DGMRLPFSTIRLIIDFYGISKK-A 457
           G+  +VY L  +L    R G  +    L ++++   D +     T   +++ +  +K+ A
Sbjct: 107 GFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRLA 166

Query: 458 DA-----ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV 512
           +A     A+K   D    C P      ++ YS L+    K     + + +LEEM   G+ 
Sbjct: 167 EARVLFEAMKKGGD----CRPN-----LVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLK 217

Query: 513 PDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA------------Y 560
            DV  +S L+  F  +GD +  ++LF  + +  V P+   +  L+Q              
Sbjct: 218 ADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEM 277

Query: 561 CKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
            K ++   + PD     +L   L K GR  +A  V
Sbjct: 278 LKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKV 312



 Score = 43.1 bits (100), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 5/155 (3%)

Query: 84  SALSIMEALK-----SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV 138
           +A  ++EALK         FS N  T   +   L K Q     + L   +  S      +
Sbjct: 444 AARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVI 503

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
           ++  LM        LE   S + E R     +   S+NI++    K G    A E   ++
Sbjct: 504 DYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEM 563

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
                +P++ T++++I     LG LD A+ ++  +
Sbjct: 564 FMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKM 598



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 20/146 (13%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L   L K  R  DAI VL+ M+  G  P   T++ ++     +        +  M+ 
Sbjct: 293 YTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMV 352

Query: 543 QNGVEPDAYMFKVLIQAYCK-------------YLSNS-NLMPDAATKELLKKSLWKEGR 588
           + G +PDA  +  L++  C               LS   ++ PD  T   L + L KEGR
Sbjct: 353 KKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGR 412

Query: 589 RKEAAAVEERCEKINDVPSLALRGHI 614
             +AA +       + +  + L+G+I
Sbjct: 413 VHDAARIH------SSMVEMGLQGNI 432


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 106/246 (43%), Gaps = 11/246 (4%)

Query: 65  RLLDPFIVTHALRSAPNA-------DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR 117
           R +DP I T++  S  N        D A  + E + S   F  N  T + L     K++R
Sbjct: 354 RSIDPDIFTYS--SLINGFCMHDRLDEAKHMFELMISKDCFP-NVVTYNTLIKGFCKAKR 410

Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI 177
             E   L  ++S    +  +V +  L+Q    +GD ++    + +           +Y+I
Sbjct: 411 VEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSI 470

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           ++    K GK  +A+  F  +      P+  TY +MIE +   GK++   ++F +L L  
Sbjct: 471 LLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 530

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQ-EMGFIQGAN 296
           +K     Y  ++ GF      +EA +L  EM++DG  P       L R +   G    + 
Sbjct: 531 VKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASA 590

Query: 297 EFLREM 302
           E ++EM
Sbjct: 591 ELIKEM 596



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 88/484 (18%), Positives = 193/484 (39%), Gaps = 46/484 (9%)

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L G++  S+ L   V F  L+   +     +LV+S     +         SYNI+++ + 
Sbjct: 67  LFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFC 126

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           +  +   A+    +++  G  P+  T + ++    +  ++  A+ +   + +M  +  + 
Sbjct: 127 RRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTV 186

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREM 302
            +  L+ G     +  EA +L++ M   G  P        +  + + G I  A   L++M
Sbjct: 187 TFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM 246

Query: 303 LPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVS 362
              K   +V  Y    D   +  + N++       + L   +D K +   +  ++  +  
Sbjct: 247 EKGKIEADVVIYTTIIDALCNYKNVNDA-------LNLFTEMDNKGIRPNVVTYNSLIRC 299

Query: 363 LLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHV 422
           L    ++   +RL+  ++    +P                  +V     ++    + G +
Sbjct: 300 LCNYGRWSDASRLLSDMIERKINP------------------NVVTFSALIDAFVKEGKL 341

Query: 423 ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK--FKLM 480
              ++L  ++    +     T   +I+ + +  + D A   F         ISK  F  +
Sbjct: 342 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE------LMISKDCFPNV 395

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           + Y++L++   K KR  + + +  EM   G+V +  T++ L+      GD  + QK+F  
Sbjct: 396 VTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKK 455

Query: 541 VRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGR 588
           +  +GV PD   + +L+   CK            YL  S + PD  T  ++ + + K G+
Sbjct: 456 MVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGK 515

Query: 589 RKEA 592
            ++ 
Sbjct: 516 VEDG 519



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 83/204 (40%), Gaps = 1/204 (0%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           +  AL +  N + AL++   +  N     N  T ++L   L    R  +   L+ D+   
Sbjct: 261 IIDALCNYKNVNDALNLFTEM-DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIER 319

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
           K     V F  L+  +   G L      ++E  +R+      +Y+ +++ +    +  EA
Sbjct: 320 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 379

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
              F  +I +   PN  TY  +I+      +++  +E+F  +    +   +  Y  L++G
Sbjct: 380 KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQG 439

Query: 252 FVGVERFDEAKSLLNEMRDDGKFP 275
                  D A+ +  +M  DG  P
Sbjct: 440 LFQAGDCDMAQKIFKKMVSDGVPP 463



 Score = 43.9 bits (102), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 37/203 (18%), Positives = 85/203 (41%), Gaps = 16/203 (7%)

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALK 462
           ++D+Y+   ++    R   + L   ++ K+   G      T+  +++ Y   K+   A+ 
Sbjct: 112 SYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAV- 170

Query: 463 AFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
           A  D   +   +      + +++L+  L    +  +A+ +++ M+  G  PD+ T+  ++
Sbjct: 171 ALVDQMFV---MEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVV 227

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLM 570
                +GD  +   L   + +  +E D  ++  +I A C Y            + N  + 
Sbjct: 228 NGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIR 287

Query: 571 PDAATKELLKKSLWKEGRRKEAA 593
           P+  T   L + L   GR  +A+
Sbjct: 288 PNVVTYNSLIRCLCNYGRWSDAS 310


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 96/474 (20%), Positives = 185/474 (39%), Gaps = 62/474 (13%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS--VYAKTGKNFEAVETFRQVID 200
           +++ YS    ++  ++T N  +    +    SYN V+   V ++      A E +R++I 
Sbjct: 148 MVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIR 207

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
               PN  TY ++I    ++G+L   L  F  +           Y  L++ +  + R DE
Sbjct: 208 SRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDE 267

Query: 261 AKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSD 319
           A  LL  M   G  P   +  V +  +   G ++ A E L EM           Y+  + 
Sbjct: 268 AFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEM----------GYKGFTP 317

Query: 320 DDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL--VC 377
           D+            + Y   L  +         L   +  V + ++ +   +T  +  +C
Sbjct: 318 DE------------VTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMC 365

Query: 378 KVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM 437
           K     ++   A  FF  +  + G   +      ++   +R G +    R++ ++   G 
Sbjct: 366 KA----RNLNRAMEFFDQMRIR-GLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGF 420

Query: 438 RLPFSTIRLIIDFYGISKKADAALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKR 495
                T    I  + + ++ + AL    +  ++ L   +      + YS+++    + K 
Sbjct: 421 SPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDV------VSYSTIISGFCR-KG 473

Query: 496 DFD-AINVLEEMIFSGIVPDVQTFSGLMYHFA----LQGDEKIVQKLFSMVRQNGVEPDA 550
           + D A  + +EM+  G+ PD  T+S L+        L     + Q++  M    G+ PD 
Sbjct: 474 ELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDM----GLPPDE 529

Query: 551 YMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           + +  LI AYC              + +   +PDA T  +L   L K+ R +EA
Sbjct: 530 FTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREA 583



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 77/193 (39%), Gaps = 1/193 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A  +++++ S      N  + + +   L +     E   ++ ++    F    V +  
Sbjct: 266 DEAFGLLKSMSSK-GMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 324

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  Y   G+    L    E  +     S  +Y  +++   K      A+E F Q+   G
Sbjct: 325 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRG 384

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             PN RTYT +I+     G L+ A  + + +       +   Y   + G   +ER +EA 
Sbjct: 385 LRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEAL 444

Query: 263 SLLNEMRDDGKFP 275
            ++ EM + G  P
Sbjct: 445 GVVQEMVEKGLAP 457



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 59/136 (43%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  L+  +S  G L       NE  +     S  +YN  +  +    +  EA+   ++++
Sbjct: 392 YTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMV 451

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           ++G  P+  +Y+ +I      G+LD A ++   +    +   +  Y  L++G   + R  
Sbjct: 452 EKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLT 511

Query: 260 EAKSLLNEMRDDGKFP 275
           EA  L  EM D G  P
Sbjct: 512 EACDLSQEMLDMGLPP 527



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 73/181 (40%), Gaps = 18/181 (9%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  L+  Y   GDL   L   +E   +  L    +Y+++++   K  +  EA     ++I
Sbjct: 532 YTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLI 591

Query: 200 DEGAIPNSRTYTVMIEHLVNL---------------GKLDSALEVFSALPLMRIKRTSKQ 244
            E ++P+  TY  +IE+  N+               G +  A  VF ++     K     
Sbjct: 592 YEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAV 651

Query: 245 YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLP 304
           Y +++ G        +A +L  EM   G  P     + L +     F +G NE + E++ 
Sbjct: 652 YNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKAL---FKEGMNEEMSEVIG 708

Query: 305 D 305
           D
Sbjct: 709 D 709



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 38/214 (17%), Positives = 92/214 (42%), Gaps = 6/214 (2%)

Query: 67  LDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHEL 121
           + P +VT+     ++  A N + A+   + ++       N+ T   L    ++    +E 
Sbjct: 350 VSPSVVTYTALINSMCKARNLNRAMEFFDQMRIR-GLRPNERTYTTLIDGFSRQGLLNEA 408

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
             ++ +++ S F    V +   +  +     +E  L    E  ++       SY+ ++S 
Sbjct: 409 YRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISG 468

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
           + + G+   A +  ++++++G  P++ TY+ +I+ L  + +L  A ++   +  M +   
Sbjct: 469 FCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPD 528

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              Y  L+  +      ++A  L +EM   G  P
Sbjct: 529 EFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLP 562


>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
 gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 87/196 (44%), Gaps = 3/196 (1%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T   L   L K  +  E K L  ++ +       V +  LM     +G+++  +  +++ 
Sbjct: 193 TYGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKM 252

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
           +++A   +  +Y+ +M    K G + EA+E    ++ +   PN  TY+ +I  L   GKL
Sbjct: 253 KKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYSTLINGLCKEGKL 312

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR---AMR 280
             A+E    + L  +K  +  Y  ++ GF  + +F EA + L+EM      P R   ++ 
Sbjct: 313 AEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATYLDEMVLGQISPNRVTWSLH 372

Query: 281 VALERMQEMGFIQGAN 296
           V L  M   G     N
Sbjct: 373 VKLNNMVVQGLCTNGN 388



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 87/217 (40%), Gaps = 19/217 (8%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID-FYGISKKADAALKAFHD-DRT 469
           +  IL     +++       +R  G+R    ++ ++I      S   DAA + F +  + 
Sbjct: 126 VFAILVEENQLKVAMSFYKYMREMGVRQSVVSLNVLIKALCKNSGTIDAAFEIFREMPKR 185

Query: 470 LCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
            C P S       Y +L+  L K  + F+A  + +EM   G  P V T+S LM+     G
Sbjct: 186 GCDPDS-----YTYGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAG 240

Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM------------PDAATKE 577
           +      LF  +++  +EP+ + +  L+   CK   +   M            P+  T  
Sbjct: 241 NVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYS 300

Query: 578 LLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHI 614
            L   L KEG+  EA    +R +     P   L G I
Sbjct: 301 TLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKI 337



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV-ETFRQVIDEGAIPNSRTYT 211
           L++ +S +   R+     S  S N+++    K     +A  E FR++   G  P+S TY 
Sbjct: 136 LKVAMSFYKYMREMGVRQSVVSLNVLIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTYG 195

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
            +I  L  LGK   A E+F  +       +   Y  L+ G       DEA  L ++M+
Sbjct: 196 TLINGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMK 253



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 55/119 (46%)

Query: 150 SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRT 209
           SG ++     + E  +R     + +Y  +++   K GK FEA E F+++  +G  P+  T
Sbjct: 169 SGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVT 228

Query: 210 YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           Y+ ++  L   G +D A+ +F  +    I+     Y  L++G        EA  LL  M
Sbjct: 229 YSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMM 287


>gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 412

 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 1/192 (0%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L K     E K +  ++ +   +   +++ +L+  +  +G LE     +NE   +    +
Sbjct: 72  LCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPN 131

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
              +N+++ +  K GK  EA +     I  G I +  TY  +I+    +G L SA ++F 
Sbjct: 132 LVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSSARKLFL 191

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMG 290
           ++P    +     Y IL+ G+  + + +EA +L NEM   GK P  +     L  + + G
Sbjct: 192 SMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTG 251

Query: 291 FIQGANEFLREM 302
            +  AN+    M
Sbjct: 252 KVGDANKLFGVM 263



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 95/207 (45%), Gaps = 9/207 (4%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL----ELV 156
           N    + L  +L K  +  E K L+        +   V + +L+  +   GDL    +L 
Sbjct: 131 NLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSSARKLF 190

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           LS  ++  +  ++    SY I+++ Y K  K  EA+  + ++   G  PN +TY+ ++  
Sbjct: 191 LSMPSKGCEHNEI----SYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTG 246

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD-DGKFP 275
           L+  GK+  A ++F  +    I   S  Y+I ++G        EA  L NE++  + K  
Sbjct: 247 LLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLD 306

Query: 276 GRAMRVALERMQEMGFIQGANEFLREM 302
             +    ++ + + G ++ A EF +++
Sbjct: 307 FESYSRLIDGLCKAGKVEIAWEFFKQL 333



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 43/77 (55%)

Query: 486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
           ++  L K   + +A  + EEM   G++P+V ++S L++ F   G  +  ++LF+ +   G
Sbjct: 68  IIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQG 127

Query: 546 VEPDAYMFKVLIQAYCK 562
           V+P+   F VLI   CK
Sbjct: 128 VQPNLVQFNVLIDILCK 144



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 3/171 (1%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T   L T L ++ +  +   L G + +S     S  ++  +     +G L   +  +
Sbjct: 236 NVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELF 295

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           NE +     L  ESY+ ++    K GK   A E F+Q+  EG  PN  T  +MI     +
Sbjct: 296 NELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRV 355

Query: 221 GKLDSALEVFSALPLMRIKRTSKQ---YLILVEGFVGVERFDEAKSLLNEM 268
            ++D A  +F  +  M     +     Y  L+ GF    + +E  +LL++M
Sbjct: 356 EQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCESNKLEEVVNLLHKM 406



 Score = 43.1 bits (100), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 70/149 (46%), Gaps = 8/149 (5%)

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD--DRTLCGP 473
           L + GH +    +  ++++ GM     +   ++  +  + K + + + F++  D+ +   
Sbjct: 72  LCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPN 131

Query: 474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
           + +F +      L+  L K  +  +A  +LE  I  GI+ D+ T++ L+  F   GD   
Sbjct: 132 LVQFNV------LIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSS 185

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            +KLF  +   G E +   + +LI  YCK
Sbjct: 186 ARKLFLSMPSKGCEHNEISYTILINGYCK 214



 Score = 42.4 bits (98), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 17/119 (14%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY-----------------TVMIEH 216
           + NI+ +      +  E +     ++  G IP+  TY                  ++I+ 
Sbjct: 12  TLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHRISVATCIIIDG 71

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           L  +G  D A E+F  +    +      Y  LV GF    + +E+K L NEM D G  P
Sbjct: 72  LCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQP 130



 Score = 40.0 bits (92), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 44/89 (49%)

Query: 177 IVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM 236
           I++    K G   EA E F ++  +G IPN  +Y+ ++      GKL+ +  +F+ +   
Sbjct: 67  IIIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQ 126

Query: 237 RIKRTSKQYLILVEGFVGVERFDEAKSLL 265
            ++    Q+ +L++      +  EAK LL
Sbjct: 127 GVQPNLVQFNVLIDILCKEGKVIEAKKLL 155



 Score = 39.3 bits (90), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 72/173 (41%), Gaps = 26/173 (15%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD-- 458
           G   ++     ++ IL + G V    +L+      G+ L   T   +ID  G  K  D  
Sbjct: 127 GVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLID--GFCKIGDLS 184

Query: 459 AALKAF---------HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS 509
           +A K F         H++ +             Y+ L+    K  +  +A+N+  EM   
Sbjct: 185 SARKLFLSMPSKGCEHNEIS-------------YTILINGYCKIWKVEEAMNLYNEMPQV 231

Query: 510 GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           G  P+V+T+S L+      G      KLF +++ +G+  D+ ++ + +   CK
Sbjct: 232 GKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCK 284


>gi|125606474|gb|EAZ45510.1| hypothetical protein OsJ_30168 [Oryza sativa Japonica Group]
          Length = 651

 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/262 (20%), Positives = 110/262 (41%), Gaps = 15/262 (5%)

Query: 59  SSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRN 118
           S L+ + LLD  +    L      D+A+++ +A+ +      +  + + L     ++ R 
Sbjct: 266 SRLIYNCLLDGLVNAGLL------DTAVNVFDAMSTEDQVRPDVVSYNILIKGYCRAGRA 319

Query: 119 HELKTLIGDIS-SSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA--KLLSTESY 175
           H+    + ++   +K     V ++ LMQ + + G   + +  + E  +R     +   +Y
Sbjct: 320 HDAMARLSEMQEQAKLTPDKVTYLTLMQCHYSEGTFPVCIGLFQEMEERGMGNDIPQHAY 379

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
            +V+    K GK FE +  F +++  G   N+  YT +I+ +   G+   A+ +F  +  
Sbjct: 380 VLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDSMGKFGREKEAMALFERMKD 439

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQG 294
             +K  S  Y ++V       + DEA +     ++ G         +L +   + G +  
Sbjct: 440 SGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQ 499

Query: 295 ANEFLREML-----PDKRIKNV 311
           + E   EM+     PD    NV
Sbjct: 500 SKELFEEMIAKGFVPDSYCYNV 521



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 87/209 (41%), Gaps = 1/209 (0%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
             + N +   AL   + K  R  E   L   +  S     SV +  ++      G L+  
Sbjct: 406 GCAANAAIYTALIDSMGKFGREKEAMALFERMKDSGLKLDSVTYGVIVNCLCRFGKLDEA 465

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           ++ +   +++   ++   Y  ++  + K G   ++ E F ++I +G +P+S  Y V+I+ 
Sbjct: 466 VACFRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQSKELFEEMIAKGFVPDSYCYNVLIDG 525

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP- 275
           L   G++D A  ++  +      +T   Y IL++G     + +EA    + M D G  P 
Sbjct: 526 LAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDGLFKEHKNEEALKFWDAMIDKGITPT 585

Query: 276 GRAMRVALERMQEMGFIQGANEFLREMLP 304
             A R     +   G    A   L E+ P
Sbjct: 586 AAAFRTLASGLCLSGKFSRACRILDELAP 614



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 75/162 (46%), Gaps = 3/162 (1%)

Query: 117 RNHELKTLIGDISSSKFLNVSVN---FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE 173
           R  +L   +    S +   ++VN   + +L+  +  +G ++     + E   +  +  + 
Sbjct: 458 RFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQSKELFEEMIAKGFVPDSY 517

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
            YN+++   AK+G+  +A   ++++ D+G      TYT++I+ L    K + AL+ + A+
Sbjct: 518 CYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDGLFKEHKNEEALKFWDAM 577

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               I  T+  +  L  G     +F  A  +L+E+   G  P
Sbjct: 578 IDKGITPTAAAFRTLASGLCLSGKFSRACRILDELAPMGVIP 619



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM-RIKRTSKQYLILVEGFVGVERFDE 260
           G  P+   Y  +++ LVN G LD+A+ VF A+    +++     Y IL++G+    R  +
Sbjct: 262 GVEPSRLIYNCLLDGLVNAGLLDTAVNVFDAMSTEDQVRPDVVSYNILIKGYCRAGRAHD 321

Query: 261 AKSLLNEMRDDGKF 274
           A + L+EM++  K 
Sbjct: 322 AMARLSEMQEQAKL 335



 Score = 40.4 bits (93), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 70/194 (36%), Gaps = 16/194 (8%)

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLL 487
           L  +++  G++L   T  +I++      K D A+  F      C         + Y+SL+
Sbjct: 433 LFERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRS----CQEKGIAVNAIFYTSLI 488

Query: 488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE 547
               K      +  + EEMI  G VPD   ++ L+   A  G       L+  +  +G +
Sbjct: 489 DGFGKAGMVDQSKELFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCD 548

Query: 548 PDAYMFKVLIQAYCKYLSNS------------NLMPDAATKELLKKSLWKEGRRKEAAAV 595
              Y + +LI    K   N              + P AA    L   L   G+   A  +
Sbjct: 549 QTVYTYTILIDGLFKEHKNEEALKFWDAMIDKGITPTAAAFRTLASGLCLSGKFSRACRI 608

Query: 596 EERCEKINDVPSLA 609
            +    +  +P  A
Sbjct: 609 LDELAPMGVIPETA 622


>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 772

 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 90/193 (46%), Gaps = 1/193 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D AL  ++A+      + +  T + LA  L K  R  E K ++  +         V F  
Sbjct: 409 DEALR-LQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTM 467

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
            ++ Y   G+L      + +  ++ ++ +  +YN ++  Y K  K  +A +   ++I++G
Sbjct: 468 FIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKG 527

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +P+  TY+ +I     +G++D AL++F+ + L  I R    Y  ++ G     R DEA 
Sbjct: 528 LLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVATYTSMISGLSKEGRADEAF 587

Query: 263 SLLNEMRDDGKFP 275
            L +EM   G  P
Sbjct: 588 KLYDEMMKIGLIP 600



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 83/208 (39%), Gaps = 36/208 (17%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+QWYS+SGD+E     + E R++   +    Y+ ++S   + G    A   F ++    
Sbjct: 293 LIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQRD 352

Query: 203 AIPNSRTYTVMIEHL----------------------VNL-------------GKLDSAL 227
            +PN+ TY  +I  +                      +NL             GK+D AL
Sbjct: 353 IVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEAL 412

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA-MRVALERM 286
            + + +    I      Y IL  G   + R+DEAK +LN M + G  P      + +E  
Sbjct: 413 RLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIY 472

Query: 287 QEMGFIQGANEFLREMLPDKRIKNVRYY 314
            + G +  A    R+M     + N+  Y
Sbjct: 473 CKEGNLAEAERLFRDMEKKGEVPNIITY 500



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 20/191 (10%)

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALK--AFHDDRTLCGP 473
           + + G +E  + L+ +++S G+ L        +D Y    K D AL+  A  + + +   
Sbjct: 367 VCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINAD 426

Query: 474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
           +        Y+ L   L K  R  +A  +L  M+  G+ P+V TF+  +  +  +G+   
Sbjct: 427 V------FTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAE 480

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKK 581
            ++LF  + + G  P+   +  LI AYCK             + N  L+PD  T   L  
Sbjct: 481 AERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIH 540

Query: 582 SLWKEGRRKEA 592
                GR  EA
Sbjct: 541 GECIVGRVDEA 551



 Score = 42.0 bits (97), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 8/173 (4%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           + G   +V      + I  + G++   +RL   +   G      T   +ID Y   +K  
Sbjct: 455 EKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVK 514

Query: 459 AALKAFHDDRTLCGPISKFKL--MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
            A K   +       I+K  L  +  YSSL+       R  +A+ +  EM   GI  +V 
Sbjct: 515 QAHKIKSE------MINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVA 568

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNL 569
           T++ ++   + +G      KL+  + + G+ PD  +F  L+ ++ K L+++ L
Sbjct: 569 TYTSMISGLSKEGRADEAFKLYDEMMKIGLIPDDRVFTSLVGSFHKPLTHAGL 621



 Score = 39.7 bits (91), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 74/186 (39%), Gaps = 22/186 (11%)

Query: 425 VDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS 484
           VD ++  +  + +    +T  ++I +Y  S   + A K F + R     +  +    +YS
Sbjct: 271 VDEILKLMEKEQVVFSVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVY----VYS 326

Query: 485 SLL---RTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
           S++   R L   KR F    + +EM    IVP+  T+  L+      G  +  + L   +
Sbjct: 327 SMISWSRRLGNMKRAF---ALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEM 383

Query: 542 RQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRR 589
           +  GV+ +  +F   +  YC+             +    +  D  T  +L   L K  R 
Sbjct: 384 QSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRY 443

Query: 590 KEAAAV 595
            EA  +
Sbjct: 444 DEAKCI 449


>gi|297834714|ref|XP_002885239.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
 gi|297331079|gb|EFH61498.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
          Length = 1429

 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 111/240 (46%), Gaps = 22/240 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G++ D      +L   AR  + E V  +  +++  G      T   II  YG   + D A
Sbjct: 362 GFSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLA 421

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           L+ + D + L G   +    + Y+ L+ +L K  R  +A  ++ EM+  GI P +QT+S 
Sbjct: 422 LQLYKDMKGLSG---RNPDAITYTVLIDSLGKANRSVEAAALMSEMLDVGIKPTLQTYSA 478

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI----------QAYCKY--LSNSN 568
           L+  +A  G  +  +  FS + ++G +PD   + V++          +A+  Y  + +  
Sbjct: 479 LICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWVLYRDMISDG 538

Query: 569 LMPDAATKELLKKSLWKEGR----RKEAAAVEERCEKIN--DVPSLALRGHIWAVSSADL 622
             P  +  EL+   L KE R    +K    +EE C  +N  ++ S+ ++G  + +++  L
Sbjct: 539 HTPSHSLYELMILGLMKENRSDDVQKTIRDMEELC-GMNPLEISSVLVKGECFDLAARQL 597



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 96/228 (42%), Gaps = 25/228 (10%)

Query: 399 QPGYTHDVYALEKMLTILARHGHV--ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK 456
           Q G   D+ +   ++    + G +   LV  L+  +R+ G+R    T   ++        
Sbjct: 253 QRGCVPDLISFNTLINARLKSGGLTPNLVVELLDMVRNSGLRPDAITYNTLLSACSRDSN 312

Query: 457 ADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
            + A+K F D +   C P      +  Y++++    +C    +A  +  E+   G  PD 
Sbjct: 313 LEGAVKVFEDMEAHRCQPD-----LWTYNAMISVYGRCGLAAEAERLFIELELKGFSPDA 367

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------ 563
            T++ L+Y FA + + + V++++  +++ G   D   +  +I  Y K             
Sbjct: 368 VTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKD 427

Query: 564 ---LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
              LS  N  PDA T  +L  SL K  R  EAAA+      +   P+L
Sbjct: 428 MKGLSGRN--PDAITYTVLIDSLGKANRSVEAAALMSEMLDVGIKPTL 473



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 112/262 (42%), Gaps = 13/262 (4%)

Query: 63  NDRLLDPFIVTHALRSAPNADSALSI-------MEALKSNPNFSHNQSTLHALATVLAKS 115
           N  L    I  + L SA + DS L         MEA +  P+      T +A+ +V  + 
Sbjct: 290 NSGLRPDAITYNTLLSACSRDSNLEGAVKVFEDMEAHRCQPDLW----TYNAMISVYGRC 345

Query: 116 QRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
               E + L  ++    F   +V + +L+  ++   + E V   + + ++        +Y
Sbjct: 346 GLAAEAERLFIELELKGFSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTY 405

Query: 176 NIVMSVYAKTGKNFEAVETFRQVID-EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           N ++ +Y K G+   A++ ++ +    G  P++ TYTV+I+ L    +   A  + S + 
Sbjct: 406 NTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRSVEAAALMSEML 465

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQ 293
            + IK T + Y  L+ G+    + +EA+   + M   G  P   A  V L+ +      +
Sbjct: 466 DVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETR 525

Query: 294 GANEFLREMLPDKRIKNVRYYE 315
            A    R+M+ D    +   YE
Sbjct: 526 KAWVLYRDMISDGHTPSHSLYE 547



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 79/162 (48%), Gaps = 4/162 (2%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G +  V ++ K+L  L   G +E +  ++ +L+  G ++  S+I L++D +  +      
Sbjct: 817 GPSPTVESINKLLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEV 876

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
            K +   +   G +   +L   Y  ++  L K KR  DA  ++ EM  +    ++  ++ 
Sbjct: 877 NKIYSSMKA-AGYLPTIRL---YRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNS 932

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           ++  + +  D K   +++  ++++G+EPD   +  LI  YC+
Sbjct: 933 MLKMYTVIEDYKKTVQVYQRIKESGLEPDETTYNTLIIMYCR 974



 Score = 40.4 bits (93), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 37/210 (17%), Positives = 84/210 (40%), Gaps = 36/210 (17%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
            FS +  T ++L    A+ +   ++K +   +    F    + +  ++  Y   G L+L 
Sbjct: 362 GFSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLA 421

Query: 157 LSTWNEYR--------------------------QRAKLLST----------ESYNIVMS 180
           L  + + +                          + A L+S           ++Y+ ++ 
Sbjct: 422 LQLYKDMKGLSGRNPDAITYTVLIDSLGKANRSVEAAALMSEMLDVGIKPTLQTYSALIC 481

Query: 181 VYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR 240
            YAK GK  EA +TF  ++  G  P++  Y+VM++ L+   +   A  ++  +       
Sbjct: 482 GYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWVLYRDMISDGHTP 541

Query: 241 TSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
           +   Y +++ G +   R D+ +  + +M +
Sbjct: 542 SHSLYELMILGLMKENRSDDVQKTIRDMEE 571


>gi|297850744|ref|XP_002893253.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339095|gb|EFH69512.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1147

 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 92/468 (19%), Positives = 179/468 (38%), Gaps = 47/468 (10%)

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
           +F  V+ N   L+  +S SG +E       + ++    ++  S+N ++  Y K G   EA
Sbjct: 306 EFSEVTYNI--LINGFSKSGKMEEARRFHGDMQRSGFPVTPYSFNPLIEGYCKQGLFDEA 363

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
                ++++ G  P + TY + I  L   G++D A E+ S++    +      Y  L+ G
Sbjct: 364 WGVTDEMLNAGIYPTTSTYNIYIRALCEFGRIDDARELLSSMAAPDV----VSYNTLMHG 419

Query: 252 FVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKN 310
           ++ + +F EA  L ++++     P        ++ + E G ++GA     EM       +
Sbjct: 420 YIKMRKFVEASLLFDDLKAGNINPSIVTYNTLIDGLCESGNLEGAQRLKEEMTSQLIYPD 479

Query: 311 VRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFV 370
           V                      I Y   LK ++    L+   + +   +   +    + 
Sbjct: 480 V----------------------ITYTTLLKGFVKNGNLSMATEIYDEMLRKGIKPDGYA 517

Query: 371 WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIA 430
           +TTR V ++       E A+     +  +  +  D+      +  L + G++E       
Sbjct: 518 YTTRTVGEL--RLGDSEKAFRLHEEMVAEDHHAPDLTIYNVRIDGLCKVGNLEKAIEFQR 575

Query: 431 KLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTL 490
           K+   G+     T   +I  Y    +   A   +  D  L   +S    ++ Y  L+   
Sbjct: 576 KIFRVGLVPDHVTYTTVIRGYLEKGRFKMARDLY--DEMLSKRLS--PSVITYFVLIHGH 631

Query: 491 TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA 550
            K  R   A     EM   G+ P+V T + L++     G+     +    + + G+ P+ 
Sbjct: 632 AKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLHGMCKAGNIDEAYRYLCKMEEEGISPNK 691

Query: 551 YMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKE 586
           Y + +LI  +C            K + +  + PD  T   L K L K+
Sbjct: 692 YSYTILISKHCDLDKWEEVVKLYKEMLDKEIEPDGYTHRALFKHLEKD 739



 Score = 43.5 bits (101), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 67/156 (42%), Gaps = 6/156 (3%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  +++ Y   G  ++    ++E   +    S  +Y +++  +AK G+  +A +   +
Sbjct: 587 VTYTTVIRGYLEKGRFKMARDLYDEMLSKRLSPSVITYFVLIHGHAKAGRLEQAFQYSTE 646

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G  PN  T+  ++  +   G +D A      +    I      Y IL+     +++
Sbjct: 647 MKKRGVRPNVMTHNALLHGMCKAGNIDEAYRYLCKMEEEGISPNKYSYTILISKHCDLDK 706

Query: 258 FDEAKSLLNEMRD-----DGKFPGRAMRVALERMQE 288
           ++E   L  EM D     DG +  RA+   LE+  E
Sbjct: 707 WEEVVKLYKEMLDKEIEPDG-YTHRALFKHLEKDHE 741



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 95/262 (36%), Gaps = 40/262 (15%)

Query: 89  MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS 148
           +E  + N  FS  + T + L    +KS +  E +   GD+  S F     +F  L++ Y 
Sbjct: 298 LEMKRRNIEFS--EVTYNILINGFSKSGKMEEARRFHGDMQRSGFPVTPYSFNPLIEGYC 355

Query: 149 TSG---------------DLELVLSTWNEY----------RQRAKLLSTE------SYNI 177
             G                +    ST+N Y              +LLS+       SYN 
Sbjct: 356 KQGLFDEAWGVTDEMLNAGIYPTTSTYNIYIRALCEFGRIDDARELLSSMAAPDVVSYNT 415

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           +M  Y K  K  EA   F  +      P+  TY  +I+ L   G L+ A  +   +    
Sbjct: 416 LMHGYIKMRKFVEASLLFDDLKAGNINPSIVTYNTLIDGLCESGNLEGAQRLKEEMTSQL 475

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGAN 296
           I      Y  L++GFV       A  + +EM   G  P G A          +G  + A 
Sbjct: 476 IYPDVITYTTLLKGFVKNGNLSMATEIYDEMLRKGIKPDGYAYTTRTVGELRLGDSEKAF 535

Query: 297 EFLREML------PDKRIKNVR 312
               EM+      PD  I NVR
Sbjct: 536 RLHEEMVAEDHHAPDLTIYNVR 557



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 1/129 (0%)

Query: 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206
           Y+     E  L ++ +  ++  L S  + NIV+ V   +    +A E +  ++  G +P 
Sbjct: 214 YTKKSMAEKCLLSFEKMIRKGFLPSVRNCNIVLRVLRDSRMMNKAQEVYETMVMHGIMPT 273

Query: 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
             T+  M++     G L+   +++  +    I+ +   Y IL+ GF    + +EA+    
Sbjct: 274 VITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKSGKMEEARRFHG 333

Query: 267 EMRDDGKFP 275
           +M+  G FP
Sbjct: 334 DMQRSG-FP 341



 Score = 38.9 bits (89), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 92/243 (37%), Gaps = 27/243 (11%)

Query: 370 VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
           V    +V +VLR  +    A   +  +    G    V     ML    + G +E VD++ 
Sbjct: 239 VRNCNIVLRVLRDSRMMNKAQEVYETMVMH-GIMPTVITFNTMLDSCFKAGDLERVDKIW 297

Query: 430 AKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG-PISKFKLMLLYSSLLR 488
            +++   +     T  ++I+ +  S K + A + FH D    G P++ +    L      
Sbjct: 298 LEMKRRNIEFSEVTYNILINGFSKSGKMEEA-RRFHGDMQRSGFPVTPYSFNPLIEGY-- 354

Query: 489 TLTKCKRDF--DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
               CK+    +A  V +EM+ +GI P   T++  +      G     ++L S +     
Sbjct: 355 ----CKQGLFDEAWGVTDEMLNAGIYPTTSTYNIYIRALCEFGRIDDARELLSSM----A 406

Query: 547 EPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAA 594
            PD   +  L+  Y K             L   N+ P   T   L   L + G  + A  
Sbjct: 407 APDVVSYNTLMHGYIKMRKFVEASLLFDDLKAGNINPSIVTYNTLIDGLCESGNLEGAQR 466

Query: 595 VEE 597
           ++E
Sbjct: 467 LKE 469


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 102/467 (21%), Positives = 186/467 (39%), Gaps = 50/467 (10%)

Query: 123 TLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVY 182
           +L+ D++    +  SV +  L+   S    +   L    E      L   +++N V+   
Sbjct: 229 SLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGL 288

Query: 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
            +  +  E  +   +++  G  PN  TY V++  L  +GK+D A  + + +P        
Sbjct: 289 CRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVP----TPND 344

Query: 243 KQYLILVEGFVGVERFDEAKSLL-NEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLR 300
             + IL+ G+V   R DEA + L ++M  +G  P        +  + + G +  A + + 
Sbjct: 345 VHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVN 404

Query: 301 EMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRI-------------AYGVQLKPWLD-- 345
           +M  +    N+  Y    D    +N    +G  +              Y V L+      
Sbjct: 405 DMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNG 464

Query: 346 --PKALANTLDEWS-----PEVVSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWV 396
             PKAL + L E S     P++        F + T +  +CKV R     E A   +  +
Sbjct: 465 KVPKAL-DMLGEMSDKGCKPDI--------FTFNTLIFGLCKVDRK----EDALALYRDM 511

Query: 397 AYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK 456
               G   +      ++    R G ++   +L+  +   G  L   T   +I  +     
Sbjct: 512 LLD-GVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGA 570

Query: 457 ADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
            + AL  F +  R    P S     LL + L R    C    +A+ +L +MI  G+ PDV
Sbjct: 571 TEKALGLFDEMVRKDLVP-SNISCNLLINGLCRVGKVC----NALELLRDMIHRGLAPDV 625

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            T++ L+      G+ +    LF+ ++  G++PDA  +  LI  +C+
Sbjct: 626 VTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCR 672



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 7/177 (3%)

Query: 388 TAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLI 447
           T+   F W   Q GY H       ++  L      +++D+L+ +++ +G+    S    I
Sbjct: 84  TSMAIFQWAGSQKGYCHTFDVYHVLIDKLGAAKEFKVIDKLLLQIKEEGIAFRESLFICI 143

Query: 448 IDFYGISKKADAALKAFHDDRTL--CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEE 505
           + +YG +     A +   D + +  C P  K      Y+ +L  L        A NV  E
Sbjct: 144 MKYYGRANLPGQATRMLLDMKGVYCCEPTFKS-----YNVVLDILVSANCPSVAANVFYE 198

Query: 506 MIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           M+  G++P V TF  +M    +  +      L   + ++G  P++ +++ LI A  K
Sbjct: 199 MLSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSK 255



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 101/488 (20%), Positives = 178/488 (36%), Gaps = 90/488 (18%)

Query: 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217
           + + E   +  + +  ++ +VM       +   A    R +   G +PNS  Y  +I  L
Sbjct: 194 NVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHAL 253

Query: 218 VNLGKLDSALEVFSALPLM--------------------RIKRTSK-------------- 243
               +++ AL++   + LM                    RI   +K              
Sbjct: 254 SKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPND 313

Query: 244 -QYLILVEGFVGVERFDEAKSLLNEMR--DDGKFPGRAMRVALERMQEMGFIQGANEFLR 300
             Y +L+ G   V + DEA+ LLN++   +D  F      + +    + G +  AN FL 
Sbjct: 314 ITYGVLMNGLCRVGKVDEAQVLLNKVPTPNDVHF-----TILINGYVKSGRLDEANAFLY 368

Query: 301 EMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEV 360
               DK IKN      G   D              +   +        + + +D  +   
Sbjct: 369 ----DKMIKN------GCRPD-----------VFTFNTLIHGLCKKGLMGSAVDMVNDMS 407

Query: 361 VSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILAR 418
            +        +TT L   CK        E A +    ++ + G+  ++     +L  L +
Sbjct: 408 ANGCTPNLITYTTLLDGFCKK----NQLEEAGYVLNEMSAK-GFELNIMGYNVLLRALCK 462

Query: 419 HGHVELVDRLIAKLRSDGMRLPFSTIR-LIIDFYGISKKADAALKAFHDDRTLCGPISKF 477
           +G V     ++ ++   G +    T   LI     + +K DA   A + D  L G I+  
Sbjct: 463 NGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDAL--ALYRDMLLDGVIAN- 519

Query: 478 KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA-LQGDEKIVQK 536
              + Y++L+    +     +A+ ++ +M+F G   D  T++GL+  F  L   EK +  
Sbjct: 520 --TVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGL 577

Query: 537 LFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSN------------LMPDAATKELLKKSLW 584
              MVR++ V P      +LI   C+     N            L PD  T   L   L 
Sbjct: 578 FDEMVRKDLV-PSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLC 636

Query: 585 KEGRRKEA 592
           K G  +EA
Sbjct: 637 KMGNIREA 644



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 77/172 (44%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T + L   L K  R  +   L  D+     +  +V +  L+  +   G ++  L   N+ 
Sbjct: 487 TFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDM 546

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
             R   L   +YN ++  + K G   +A+  F +++ +  +P++ +  ++I  L  +GK+
Sbjct: 547 LFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKV 606

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            +ALE+   +    +      Y  L+ G   +    EA +L N+++ +G  P
Sbjct: 607 CNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQP 658



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 71/165 (43%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T + L   L K         ++ D+S++      + +  L+  +     LE      NE 
Sbjct: 382 TFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEM 441

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
             +   L+   YN+++    K GK  +A++   ++ D+G  P+  T+  +I  L  + + 
Sbjct: 442 SAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRK 501

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           + AL ++  + L  +   +  Y  L+  F+      EA  L+N+M
Sbjct: 502 EDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDM 546



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 59/128 (46%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + +  L++ +   G  E  L  ++E  ++  + S  S N++++   + GK   A+E  R 
Sbjct: 556 ITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRD 615

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +I  G  P+  TY  +I  L  +G +  A  +F+ L    I+  +  Y  L+        
Sbjct: 616 MIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGM 675

Query: 258 FDEAKSLL 265
           FD+A  LL
Sbjct: 676 FDDAYLLL 683



 Score = 46.6 bits (109), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 105/279 (37%), Gaps = 40/279 (14%)

Query: 347 KALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWH---FFCWVAYQ---- 399
           K   +T D +   +  L A  +F    +++ K+L   K    A+    F C + Y     
Sbjct: 96  KGYCHTFDVYHVLIDKLGAAKEF----KVIDKLLLQIKEEGIAFRESLFICIMKYYGRAN 151

Query: 400 -PGYT-------HDVYALEK-------MLTILARHGHVELVDRLIAKLRSDGMRLPFSTI 444
            PG           VY  E        +L IL       +   +  ++ S G+     T 
Sbjct: 152 LPGQATRMLLDMKGVYCCEPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTF 211

Query: 445 RLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVL 503
            +++    +  + D A     D  +  C P S     ++Y +L+  L+K  R  +A+ +L
Sbjct: 212 GVVMKALCMVNEVDNACSLLRDMTKHGCVPNS-----VVYQTLIHALSKRDRVNEALKLL 266

Query: 504 EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK- 562
           EEM   G +PDV TF+ ++Y            KL   +   G  P+   + VL+   C+ 
Sbjct: 267 EEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRV 326

Query: 563 -------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAA 594
                   L N    P+     +L     K GR  EA A
Sbjct: 327 GKVDEAQVLLNKVPTPNDVHFTILINGYVKSGRLDEANA 365



 Score = 45.8 bits (107), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 42/213 (19%), Positives = 84/213 (39%), Gaps = 7/213 (3%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           + PF +   L    +  ++++I +   S   + H     H L   L  ++    +  L+ 
Sbjct: 67  ITPFQLCKLLLLPLDVSTSMAIFQWAGSQKGYCHTFDVYHVLIDKLGAAKEFKVIDKLLL 126

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSG----DLELVLSTWNEYRQRAKLLSTESYNIVMSVY 182
            I           F+ +M++Y  +        ++L     Y       + +SYN+V+ + 
Sbjct: 127 QIKEEGIAFRESLFICIMKYYGRANLPGQATRMLLDMKGVYCCEP---TFKSYNVVLDIL 183

Query: 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
                   A   F +++ +G IP   T+ V+++ L  + ++D+A  +   +        S
Sbjct: 184 VSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNS 243

Query: 243 KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             Y  L+      +R +EA  LL EM   G  P
Sbjct: 244 VVYQTLIHALSKRDRVNEALKLLEEMFLMGCLP 276



 Score = 43.1 bits (100), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 98/243 (40%), Gaps = 14/243 (5%)

Query: 72  VTHALRSAPNADSALSIMEAL---KSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDI 128
           + HAL      + AL ++E +      P+       ++ L     +  R HE   L+  +
Sbjct: 249 LIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLC----RLNRIHEGAKLVDRM 304

Query: 129 SSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN 188
               F    + +  LM      G ++      N+      +     + I+++ Y K+G+ 
Sbjct: 305 LFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPTPNDV----HFTILINGYVKSGRL 360

Query: 189 FEA-VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
            EA    + ++I  G  P+  T+  +I  L   G + SA+++ + +           Y  
Sbjct: 361 DEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTT 420

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQGANEFLREMLPDK 306
           L++GF    + +EA  +LNEM   G +       V L  + + G +  A + L EM  DK
Sbjct: 421 LLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEM-SDK 479

Query: 307 RIK 309
             K
Sbjct: 480 GCK 482


>gi|302755642|ref|XP_002961245.1| hypothetical protein SELMODRAFT_70140 [Selaginella moellendorffii]
 gi|300172184|gb|EFJ38784.1| hypothetical protein SELMODRAFT_70140 [Selaginella moellendorffii]
          Length = 489

 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 101/245 (41%), Gaps = 20/245 (8%)

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           VC+VL+  +    A  FF W    P + HD      M+ +L   G+     +L  ++R  
Sbjct: 3   VCEVLKRVRDWRVALEFFTWAKSVPFFKHDAMNYSMMIRVLGTCGNYTQGRKLFDEMREK 62

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCK 494
           G++    T+  +I  YG + + D A+  F +      P   F+  +  Y+ L+  L K  
Sbjct: 63  GLKPDLVTVNNMIKCYGSANRMDDAMDLFRE-----FPDFGFEPDVCTYALLIDLLGKAG 117

Query: 495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK 554
           R  +   +  E+    + PD   F+ ++ +F+   D  +  +    ++  G+ P    + 
Sbjct: 118 RVSEVRKLFLELQSRKLKPDEYVFNSMIANFSKWKDLGLADEALDYMKVCGIRPSTVTYA 177

Query: 555 VLI-------------QAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEK 601
           +++             + YC+YL NSNL PD              GR +EA    E  EK
Sbjct: 178 IVLNMYAKSLNFMLAEKIYCEYL-NSNLPPDLYVYNNAILFFGLAGRCREAEWAVEDIEK 236

Query: 602 INDVP 606
              VP
Sbjct: 237 AGLVP 241



 Score = 42.4 bits (98), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 68/160 (42%), Gaps = 4/160 (2%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           D Y    M+   ++   + L D  +  ++  G+R    T  ++++ Y  S     A K +
Sbjct: 137 DEYVFNSMIANFSKWKDLGLADEALDYMKVCGIRPSTVTYAIVLNMYAKSLNFMLAEKIY 196

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
            +      P      + +Y++ +       R  +A   +E++  +G+VPD  ++  ++  
Sbjct: 197 CEYLNSNLPPD----LYVYNNAILFFGLAGRCREAEWAVEDIEKAGLVPDKFSYCTIISA 252

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYL 564
           +A QG     +K F   R  G+ P   M   LI AY K L
Sbjct: 253 WARQGCAPDAKKWFDKARSRGITPSPEMCNALIDAYIKAL 292


>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial [Vitis vinifera]
 gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 97/487 (19%), Positives = 189/487 (38%), Gaps = 64/487 (13%)

Query: 121 LKTLIGDISSSKFLNVSVNFMN-LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM 179
           L+ +  +I S K + +    +N ++  ++ SGD+   +S     +       T +   V+
Sbjct: 240 LQKIYAEIESDK-IELDGQLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVI 298

Query: 180 SVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIK 239
           +     G+  EA   F ++ + G +P +R Y  +++  V  G L  A  + S +      
Sbjct: 299 TALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFS 358

Query: 240 RTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM--RVALERMQEMGFIQGANE 297
                Y +L++ +    R++ A+ +L EM   G  P   +  R+ L   ++ G  Q + +
Sbjct: 359 PDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRI-LASYRDRGKWQKSFQ 417

Query: 298 FLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGV---RIAYGVQLKPWLDPKALANTLD 354
            LREM                          NSGV   R  Y V +  +     L + L 
Sbjct: 418 VLREM-------------------------RNSGVSPDRHFYNVMIDTFGKCNCLDHALA 452

Query: 355 EWSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
            +    +  +      W T +   CK   H K+ E           + G +        M
Sbjct: 453 TFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEE-----LFEAMQESGCSPCTTTYNIM 507

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-C 471
           +         E V  L+ K++S G+     T   ++D YG S +   A++     +++  
Sbjct: 508 INSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGL 567

Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
            P S      +Y++L+    +      AIN    M   G+ P V   + L+  F   G++
Sbjct: 568 KPSST-----MYNALINAYAQRGLSEQAINAFRVMRADGLKPSVLVLNSLINAF---GED 619

Query: 532 KIVQKLFSMV---RQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATK 576
           +   + FS++   ++N ++PD   +  L++A  +             ++ S   PD   +
Sbjct: 620 RRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPAVYEEMTLSGCTPDRKAR 679

Query: 577 ELLKKSL 583
            +L+ +L
Sbjct: 680 AMLRSAL 686



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 94/205 (45%), Gaps = 9/205 (4%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           + A  + EA++ +   S   +T + +     + +R  ++KTL+G + S   L   V +  
Sbjct: 483 NKAEELFEAMQES-GCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTT 541

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  Y  SG  +  +      +      S+  YN +++ YA+ G + +A+  FR +  +G
Sbjct: 542 LVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFRVMRADG 601

Query: 203 AIPNSRTYTVMIEHLVN-LGKLDSALEVFSALPLMR---IKRTSKQYLILVEGFVGVERF 258
             P+     +++  L+N  G+     E FS L  M+   +K     Y  L++  + VE+F
Sbjct: 602 LKPS----VLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVEKF 657

Query: 259 DEAKSLLNEMRDDGKFPGRAMRVAL 283
           D+  ++  EM   G  P R  R  L
Sbjct: 658 DKVPAVYEEMTLSGCTPDRKARAML 682



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 91/207 (43%), Gaps = 7/207 (3%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           LL  ++ T +L+   +A+S +S ME       FS ++ T   L    A + R    + ++
Sbjct: 332 LLKGYVKTGSLK---DAESIVSEME----RSGFSPDEHTYSLLIDAYANAGRWESARIVL 384

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
            ++ +S     S  F  ++  Y   G  +       E R          YN+++  + K 
Sbjct: 385 KEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKC 444

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
                A+ TF ++  EG  P++ T+  +I+     G  + A E+F A+        +  Y
Sbjct: 445 NCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTY 504

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDG 272
            I++  F   ER+++ K+LL +M+  G
Sbjct: 505 NIMINSFGEQERWEDVKTLLGKMQSQG 531



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 92/464 (19%), Positives = 174/464 (37%), Gaps = 53/464 (11%)

Query: 62  LNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHEL 121
           L+ +LL+  IV  A   + + + A+S +  ++ N   S   +TL A+ T L  + R  E 
Sbjct: 254 LDGQLLNDIIVGFA--KSGDVNRAMSFLAMVQGN-GLSPKTATLVAVITALGNAGRTEEA 310

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
           + +  ++     +  +  +  L++ Y  +G L+   S  +E  +        +Y++++  
Sbjct: 311 EAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDA 370

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
           YA  G+   A    +++   G  PNS  ++ ++    + GK   + +V   +    +   
Sbjct: 371 YANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPD 430

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLR 300
              Y ++++ F      D A +  + MR +G  P        ++   + G    A E   
Sbjct: 431 RHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFE 490

Query: 301 EMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEV 360
            M           Y          N   NS     +G Q + W D K L   +     + 
Sbjct: 491 AMQESGCSPCTTTY----------NIMINS-----FGEQER-WEDVKTLLGKM-----QS 529

Query: 361 VSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHG 420
             LLA+     T   +      FK           V  +P  T        ++   A+ G
Sbjct: 530 QGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSST----MYNALINAYAQRG 585

Query: 421 HVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM 480
             E        +R+DG++     +  +I+             AF +DR      S  + M
Sbjct: 586 LSEQAINAFRVMRADGLKPSVLVLNSLIN-------------AFGEDRRDAEAFSVLQYM 632

Query: 481 ---------LLYSSLLRTLTKCKRDFDAI-NVLEEMIFSGIVPD 514
                    + Y++L++ L + ++ FD +  V EEM  SG  PD
Sbjct: 633 KENDLKPDVVTYTTLMKALIRVEK-FDKVPAVYEEMTLSGCTPD 675



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 97/249 (38%), Gaps = 51/249 (20%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           D   L  ++   A+ G V      +A ++ +G+    +T+  +I   G + + + A +A 
Sbjct: 255 DGQLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEA-EAI 313

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
            ++    G + + +    Y++LL+   K     DA +++ EM  SG  PD  T+S L+  
Sbjct: 314 FEELKEGGLMPRTRA---YNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDA 370

Query: 525 FALQG--------------------------------DEKIVQKLFSMVRQ---NGVEPD 549
           +A  G                                D    QK F ++R+   +GV PD
Sbjct: 371 YANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPD 430

Query: 550 AYMFKVLIQAY--CKYLSNS----------NLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
            + + V+I  +  C  L ++           + PDA T   L     K G   +A  + E
Sbjct: 431 RHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFE 490

Query: 598 RCEKINDVP 606
             ++    P
Sbjct: 491 AMQESGCSP 499



 Score = 39.7 bits (91), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 40/220 (18%), Positives = 85/220 (38%), Gaps = 18/220 (8%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G++ D +    ++   A  G  E    ++ ++ + G+R        I+  Y    K   +
Sbjct: 356 GFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKS 415

Query: 461 LKAFHDDR-TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
            +   + R +   P   F     Y+ ++ T  KC     A+   + M   G+ PD  T++
Sbjct: 416 FQVLREMRNSGVSPDRHF-----YNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWN 470

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNS 567
            L+      G     ++LF  ++++G  P    + ++I ++ +             + + 
Sbjct: 471 TLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQ 530

Query: 568 NLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
            L+ +  T   L     + GR K+A    E  + +   PS
Sbjct: 531 GLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPS 570


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 107/241 (44%), Gaps = 8/241 (3%)

Query: 64  DRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT 123
           + L+D + +   ++    A S  + M     NP+       ++       K ++  E   
Sbjct: 334 NSLMDGYCL---VKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFC----KIKKFDEAMN 386

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L  ++     +   V + +L+   S SG +   L   ++   R    +  +YN ++    
Sbjct: 387 LFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALC 446

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           K  +  +A+    ++ D+G  PN  TY+++I+ L   GKL+ A +VF  L +        
Sbjct: 447 KIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVD 506

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREM 302
            Y I+++GF     F+EA +LL++M D+G  P  +   + +  + +      A + LREM
Sbjct: 507 TYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREM 566

Query: 303 L 303
           +
Sbjct: 567 I 567



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 10/165 (6%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD-- 458
           GY  D      ++  L   G ++       K+ + G    F  I      +G+ K  +  
Sbjct: 150 GYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFH--FDQISYGTLIHGLCKVGETR 207

Query: 459 AALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
           AAL      D  L  P      +++Y++++ ++ K K   +A ++  EMI  GI PDV T
Sbjct: 208 AALDLLQRVDGNLVQPN-----VVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVT 262

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           +S L+  F + G       LF+ +    ++PD Y F +L+ A+CK
Sbjct: 263 YSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCK 307



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 95/212 (44%), Gaps = 1/212 (0%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T + L     K  +  E KT+   +         V + +LM  Y    ++    S +N  
Sbjct: 297 TFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTM 356

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
            Q       +SY+I+++ + K  K  EA+  F+++  +  IP+  TY+ +I+ L   G++
Sbjct: 357 AQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRI 416

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVA 282
             AL++   +    +  T + Y  +++    + + D+A +LL +++D G  P      + 
Sbjct: 417 SYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSIL 476

Query: 283 LERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
           ++ + + G ++ A +    +L      NV  Y
Sbjct: 477 IKGLCQSGKLEDARKVFEGLLVKGHNLNVDTY 508



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 93/221 (42%), Gaps = 25/221 (11%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           DVY    ++    + G ++    +   +   G++  F T   ++D Y + K+ + A   F
Sbjct: 294 DVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIF 353

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
             +    G ++    +  YS ++    K K+  +A+N+ +EM    I+PDV T+S L+  
Sbjct: 354 --NTMAQGGVNP--DIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDG 409

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPD 572
            +  G      +L   +   GV P    +  ++ A CK             L +  + P+
Sbjct: 410 LSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPN 469

Query: 573 AATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGH 613
             T  +L K L + G+ ++A  V E          L ++GH
Sbjct: 470 MYTYSILIKGLCQSGKLEDARKVFE---------GLLVKGH 501



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 50/101 (49%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YN ++    K     EA + F ++I +G  P+  TY+ +I     LGKL+ A+++F+ + 
Sbjct: 228 YNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMI 287

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           L  IK     + ILV  F    +  E K++ + M   G  P
Sbjct: 288 LENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKP 328



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 12/139 (8%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS+L+       +  DAI++  +MI   I PDV TF+ L+  F   G  K  + +F M+ 
Sbjct: 263 YSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMM 322

Query: 543 QNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRK 590
           + G++P+   +  L+  YC              ++   + PD  +  ++     K  +  
Sbjct: 323 KQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFD 382

Query: 591 EAAAVEERCEKINDVPSLA 609
           EA  + +   + N +P + 
Sbjct: 383 EAMNLFKEMHRKNIIPDVV 401



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 83/462 (17%), Positives = 171/462 (37%), Gaps = 77/462 (16%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SY  ++    K G+   A++  ++V      PN   Y  +I+ +  +  ++ A ++FS +
Sbjct: 192 SYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEM 251

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
               I      Y  L+ GF  + + ++A  L N+M                         
Sbjct: 252 ISKGISPDVVTYSALISGFCILGKLNDAIDLFNKM------------------------- 286

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALA--N 351
                L  + PD    N+       D    E        +  + + +K  + P  +   +
Sbjct: 287 ----ILENIKPDVYTFNILVNAFCKDGKMKEG-------KTVFDMMMKQGIKPNFVTYNS 335

Query: 352 TLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVA------------YQ 399
            +D +   +V  +  AK ++ T     V    +S     + FC +             ++
Sbjct: 336 LMDGYC--LVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHR 393

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
                DV     ++  L++ G +    +L+ ++   G+     T   I+D          
Sbjct: 394 KNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILD---------- 443

Query: 460 ALKAFHDDRTLCGPISKFK------LMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP 513
           AL   H        ++K K       M  YS L++ L +  +  DA  V E ++  G   
Sbjct: 444 ALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNL 503

Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDA 573
           +V T++ ++  F ++G       L S +  NG  PDA  ++++I +  K   + N M + 
Sbjct: 504 NVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFK--KDENDMAEK 561

Query: 574 ATKELLKK-------SLWKEGRRKEAAAVEERCEKINDVPSL 608
             +E++ +       ++W + +++   + E +      VP  
Sbjct: 562 LLREMIARGVRPRQIAIWFQKKKEYDVSSEPKTLTEQSVPKF 603


>gi|242073234|ref|XP_002446553.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
 gi|241937736|gb|EES10881.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
          Length = 381

 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 154/366 (42%), Gaps = 44/366 (12%)

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
           EG  PN  TY V+I+ +   G +D A E+ ++LP    K  +  Y  +++G   +ER+ +
Sbjct: 10  EGCEPNVVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGLCSIERWVD 69

Query: 261 AKSLLNEMRDDGKFPGRA-MRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY----- 314
           A+ LL+EM  +   P  A + V +  +   G +Q    +L +M       NV  Y     
Sbjct: 70  AEELLDEMVRENCPPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTANVVTYNAVIS 129

Query: 315 ---EDGSDDDEDE--NDDNNSGVR---IAYGVQLK------PWLDPKALANTL--DEWSP 358
              E G  D   E  ++  + G +   + Y   LK       W D + L   +  ++  P
Sbjct: 130 GMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDAEELMIKMSQNDCLP 189

Query: 359 EVVSLLADAKFVWTTRLVCKVLRHFKS-PETAWHFFCWVAYQPGYTHDVYALEKMLTILA 417
           + V+      F+    L+ +    FK  PE   +        P  T        ++  LA
Sbjct: 190 DNVTFNTIISFLCQKGLILQAFEVFKQMPEKGCN--------PNST----TYSTIIGGLA 237

Query: 418 RHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKF 477
           + G +E    L+ ++ S G        +L+ +      K +  ++  H  +     IS  
Sbjct: 238 KAGKMEQALELLNEMASKGYNTD-KMYQLLTESLNKEDKIEEVVQVVHKLQD--SGISPQ 294

Query: 478 KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF----SGLMYHFALQGDEKI 533
              +L++++L  L +  +   AI+VL +M+  G +PD  T+     GL Y   LQ   ++
Sbjct: 295 T--VLFNTVLLVLCRNGKTDYAIDVLADMVSYGCMPDELTYIILIEGLSYEGYLQEAREL 352

Query: 534 VQKLFS 539
           V +L S
Sbjct: 353 VSRLCS 358



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 1/102 (0%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++N ++S   + G   +A E F+Q+ ++G  PNS TY+ +I  L   GK++ ALE+ + +
Sbjct: 193 TFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLAKAGKMEQALELLNEM 252

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              +   T K Y +L E     ++ +E   ++++++D G  P
Sbjct: 253 A-SKGYNTDKMYQLLTESLNKEDKIEEVVQVVHKLQDSGISP 293



 Score = 43.1 bits (100), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 29/134 (21%), Positives = 61/134 (45%), Gaps = 2/134 (1%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           + N++++  ++ G   +      ++   G   N  TY  +I  +   G +DSALE+ S +
Sbjct: 88  TVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTANVVTYNAVISGMCEQGHVDSALELLSNM 147

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
                K     Y  L++G    +++++A+ L+ +M  +   P        +  + + G I
Sbjct: 148 QSFGCKPDIVTYNTLLKGLCSADQWEDAEELMIKMSQNDCLPDNVTFNTIISFLCQKGLI 207

Query: 293 QGANEFLREMLPDK 306
             A E  ++M P+K
Sbjct: 208 LQAFEVFKQM-PEK 220



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 66/150 (44%), Gaps = 3/150 (2%)

Query: 86  LSIMEALKSNP--NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL 143
           L   E  K  P    + N +T   +   LAK+ +  +   L+ +++S  + N    +  L
Sbjct: 208 LQAFEVFKQMPEKGCNPNSTTYSTIIGGLAKAGKMEQALELLNEMASKGY-NTDKMYQLL 266

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
            +  +    +E V+   ++ +       T  +N V+ V  + GK   A++    ++  G 
Sbjct: 267 TESLNKEDKIEEVVQVVHKLQDSGISPQTVLFNTVLLVLCRNGKTDYAIDVLADMVSYGC 326

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +P+  TY ++IE L   G L  A E+ S L
Sbjct: 327 MPDELTYIILIEGLSYEGYLQEARELVSRL 356



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 43/99 (43%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN ++       +  +A E   ++     +P++ T+  +I  L   G +  A EVF  +
Sbjct: 158 TYNTLLKGLCSADQWEDAEELMIKMSQNDCLPDNVTFNTIISFLCQKGLILQAFEVFKQM 217

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           P       S  Y  ++ G     + ++A  LLNEM   G
Sbjct: 218 PEKGCNPNSTTYSTIIGGLAKAGKMEQALELLNEMASKG 256


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 89/453 (19%), Positives = 172/453 (37%), Gaps = 73/453 (16%)

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A+E   ++   G  P++ T+T +I  + N G LD A++   +   M        Y  L+ 
Sbjct: 9   ALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRS---MGCDPNVVTYTALIA 65

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIK 309
            F   ++ +EA  LL EMR+ G  P      V ++ + ++  +  A + +++M+      
Sbjct: 66  AFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAP 125

Query: 310 NVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF 369
           NV  +    D      + +++  R   G+ +   + P  +      +S  +  L    KF
Sbjct: 126 NVMTFNSLVDGFCKRGNVDDA--RKLLGIMVAKGMRPNVVT-----YSALIDGLCKSQKF 178

Query: 370 VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
           +       +VL   K+               G T D +    ++  L +   +E  ++++
Sbjct: 179 LEAK----EVLEEMKAS--------------GVTPDAFTYSALIHGLCKADKIEEAEQML 220

Query: 430 AKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRT----------------LC-- 471
            ++   G          II  +  S K   A K   + R                 LC  
Sbjct: 221 RRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKL 280

Query: 472 GPISKFKLML--------------LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
           G I++ +++L               YS+++  L K     +A  +L+ M  +G  PDV T
Sbjct: 281 GKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVT 340

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LS 565
           ++ ++      G  +  + L   +++ G  P+   +  LI   CK             + 
Sbjct: 341 YTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMR 400

Query: 566 NSNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
           N+   P+  T   +   L   GR KEA  + +R
Sbjct: 401 NAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQR 433



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 105/505 (20%), Positives = 208/505 (41%), Gaps = 51/505 (10%)

Query: 78  SAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVS 137
           +A +  +AL ++E +KS   F+ +  T   + T +A +    +L   +  + S       
Sbjct: 2   NAGDLHAALELLEEMKS-AGFAPDAFTHTPIITAMANA---GDLDGAMDHLRSMGCDPNV 57

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+  ++ +  LE  +    E R+R    +  +YN+++    K      A +  ++
Sbjct: 58  VTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKK 117

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +I+ G  PN  T+  +++     G +D A ++   +    ++     Y  L++G    ++
Sbjct: 118 MIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQK 177

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
           F EAK +L EM+  G  P      AL   + +   I+ A + LR M       +V  Y  
Sbjct: 178 FLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVY-- 235

Query: 317 GSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEW-SPEVVSLLADAKFVWTTRL 375
                        S +  A+    K     K L     +  SP+VV+      +      
Sbjct: 236 -------------SSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVT------YNTVIDG 276

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           +CK+ +  +    A      +        DV     ++  L +   +    +L+ ++   
Sbjct: 277 LCKLGKIAE----AQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKA 332

Query: 436 GMRLPFSTIRLIIDFYGISK-----KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTL 490
           G      T   IID  G+ K     +A+  L+     R  C P      ++ Y++L+  L
Sbjct: 333 GCNPDVVTYTTIID--GLCKCGRLEEAEYLLQGMK--RAGCAPN-----VVTYTTLISGL 383

Query: 491 TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE--P 548
            K ++  +A  V+EEM  +G  P++ T++ ++    + G  K  Q+L   ++    E  P
Sbjct: 384 CKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSP 443

Query: 549 DAYMFKVLIQAYCKYLSNSNLMPDA 573
           DA  ++ ++ A    L +S+L+ +A
Sbjct: 444 DAATYRTIVNA----LMSSDLVQEA 464



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 12/135 (8%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS+L+  L K ++  +A  VLEEM  SG+ PD  T+S L++        +  +++   + 
Sbjct: 165 YSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMA 224

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
            +G  PD  ++  +I A+CK             +      PD  T   +   L K G+  
Sbjct: 225 GSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIA 284

Query: 591 EAAAVEERCEKINDV 605
           EA  + ++ ++  DV
Sbjct: 285 EAQVILDQMQESGDV 299



 Score = 40.4 bits (93), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 44/213 (20%), Positives = 88/213 (41%), Gaps = 18/213 (8%)

Query: 69  PFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDI 128
           P I   A+ +A + D A+  + ++  +PN      T  AL    A++++  E   L+ ++
Sbjct: 30  PIIT--AMANAGDLDGAMDHLRSMGCDPNVV----TYTALIAAFARAKKLEEAMKLLEEM 83

Query: 129 SSSKF------LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVY 182
                       NV V+ +  +     + D   V+    E      +++   +N ++  +
Sbjct: 84  RERGCPPNLVTYNVLVDALCKLSMVGAAQD---VVKKMIEGGFAPNVMT---FNSLVDGF 137

Query: 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
            K G   +A +    ++ +G  PN  TY+ +I+ L    K   A EV   +    +   +
Sbjct: 138 CKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDA 197

Query: 243 KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             Y  L+ G    ++ +EA+ +L  M   G  P
Sbjct: 198 FTYSALIHGLCKADKIEEAEQMLRRMAGSGCTP 230



 Score = 40.4 bits (93), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 52/137 (37%), Gaps = 13/137 (9%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y  ++    K G+  EA    + +   G  PN  TYT +I  L    K+D A  V   +
Sbjct: 340 TYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEM 399

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA--------MRVALER 285
                      Y  +V G     R  EA+ L+  M+D     GRA         R  +  
Sbjct: 400 RNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKD-----GRAECSPDAATYRTIVNA 454

Query: 286 MQEMGFIQGANEFLREM 302
           +     +Q A + L +M
Sbjct: 455 LMSSDLVQEAEQLLEQM 471


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 87/443 (19%), Positives = 167/443 (37%), Gaps = 80/443 (18%)

Query: 174 SYNIVMSVYAKTGKNFEAV-ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           ++N ++    + G  FE V +   Q++D G  P+ R Y  +++ +   G L+ A E+   
Sbjct: 262 TFNTLIGYLCRNGL-FERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDR 320

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD-DGKFPGRAMRVALERMQEMGF 291
           +P   +K     Y  +++G    ER+++A+ LL EM D D         + ++   + G 
Sbjct: 321 MPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGL 380

Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALAN 351
           +    E L +ML    + +V  Y          N     G+     + LK         N
Sbjct: 381 VYRVIELLEQMLEHGCVPDVITYTTVI------NGFCKEGLIDEAVMLLKSMAACGCRPN 434

Query: 352 TLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEK 411
           T+  ++  +  L +  ++V    L+ +++    SP                         
Sbjct: 435 TI-SYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPV------------------TFNT 475

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           ++  L + G VE    L+ ++  +G      +   +ID  G + K D AL+         
Sbjct: 476 VINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALE--------- 526

Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
                                         +L  M+  G+ P+   +S +    + +G  
Sbjct: 527 ------------------------------LLNVMVNKGMSPNTIIYSSIASALSKEGRI 556

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELL 579
             V ++F  ++   +  DA ++  +I + CK            Y+ +S  MP+ +T  +L
Sbjct: 557 NRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTIL 616

Query: 580 KKSLWKEGRRKEAA-AVEERCEK 601
            + L  EG  KEA   + E C K
Sbjct: 617 IRGLASEGFVKEAQEMLTELCSK 639



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 49/105 (46%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           +T SY IV+       +  +A +   Q+I++G  PN  T+  +I  L   G ++ A+E+ 
Sbjct: 434 NTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELL 493

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             + L         Y  +++G     + DEA  LLN M + G  P
Sbjct: 494 KQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSP 538



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 8/139 (5%)

Query: 427 RLIAKLRSDGMRLPFSTIRLIID-FYGISKKADAALKAFHDDRTL--CGPISKFKLMLLY 483
           R++  L   G  L      L+++         D AL+   D  T   C P      ++ Y
Sbjct: 174 RVLQDLHGRGCALDVGNCNLVLNAVCDQGGSVDEALRLLRDLPTSFGCDPD-----VVSY 228

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           +++L+ L   KR     +++EEM+  G  P+V TF+ L+ +    G  + V ++ + +  
Sbjct: 229 NAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVD 288

Query: 544 NGVEPDAYMFKVLIQAYCK 562
           +G  PD  M+  ++   CK
Sbjct: 289 HGCTPDIRMYATVLDGVCK 307



 Score = 40.0 bits (92), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 10/165 (6%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   +V     ++  L R+G  E V +++A++   G          ++D  G+ K+    
Sbjct: 255 GCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLD--GVCKEGH-- 310

Query: 461 LKAFHD--DRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
           L+  H+  DR    P    K  ++ Y+++L+ L   +R   A  +L EM  +    D  T
Sbjct: 311 LEVAHEILDRM---PSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVT 367

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           F+ L+  F   G    V +L   + ++G  PD   +  +I  +CK
Sbjct: 368 FNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCK 412


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 112/526 (21%), Positives = 203/526 (38%), Gaps = 82/526 (15%)

Query: 103 STLHALATVLAKSQRNH---ELKTLIGDISSSKFLNV-SVNFMNLMQWYSTSGDLELVLS 158
           S  +AL  VL+++   H   E   L+  +SS   +N  ++N M  +  Y  + + +   +
Sbjct: 123 SASNALLAVLSRAGWPHLAQEAYRLV--LSSDSEVNAYTLNIM--VHSYCKTLEFDGADT 178

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
             +E  +R       ++N+++    + G    A+     + + G  P   TY  +++ L 
Sbjct: 179 VISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLC 238

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR- 277
              + D A EVF  +    +    + + IL+ GF  V    EA     EM+     P   
Sbjct: 239 KHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVV 298

Query: 278 AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYG 337
           +    +      G +  A  +LREM      K +    DG                + Y 
Sbjct: 299 SFSCLIGLFSRRGEMDHAGAYLREM------KGLGLVPDG----------------VIYT 336

Query: 338 VQLKPWLDPKALANTL---DEWS-----PEVVSLLADAKFVWTTRL--VCKVLRHFKSPE 387
           + +  +    +++  L   DE       P+VV+        + T L  +CK  R   + +
Sbjct: 337 MVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVT--------YNTLLNGLCKQHRLLDAEK 388

Query: 388 TAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLI 447
                      + G T D+     ++    R G+ E   +L   L    +R    T   +
Sbjct: 389 LLNEM-----EERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSL 443

Query: 448 IDFYGISKKADAALKA------FHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAIN 501
           ID  G+ +K D A KA       H    L   I+       YS L+ +  +  +  DA  
Sbjct: 444 ID--GMCRKGDLA-KANELWDDMHAREILPNHIT-------YSILIDSHCEKGQVEDAFG 493

Query: 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
            L+EM+  G +P+++T++ ++  +   G+ K  Q+    +RQ+ V PD   F  LI  Y 
Sbjct: 494 FLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYI 553

Query: 562 K------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
           K             +    + PDA T  ++     ++G  ++A  V
Sbjct: 554 KEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRV 599



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 118/267 (44%), Gaps = 30/267 (11%)

Query: 367 AKFVWTTRLVCKVLRHFKSPETAWHFFCWVA-----------YQPGY-THDVYALEKMLT 414
           AK V+ T   C V    +S       FC V             Q  Y T DV +   ++ 
Sbjct: 246 AKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIG 305

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTI-RLIIDFYGISKKADAALKAFHDDRTLCGP 473
           + +R G ++     + +++  G+ +P   I  ++I  +  +     AL+   D+    G 
Sbjct: 306 LFSRRGEMDHAGAYLREMKGLGL-VPDGVIYTMVIGGFCRAGSMSEALRV-RDEMVGFGC 363

Query: 474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
           +     ++ Y++LL  L K  R  DA  +L EM   G+ PD+ TF+ L++ +  QG+ + 
Sbjct: 364 LPD---VVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFEN 420

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYCKY--LSNSN----------LMPDAATKELLKK 581
             +LF  + +  + PD   +  LI   C+   L+ +N          ++P+  T  +L  
Sbjct: 421 ALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILID 480

Query: 582 SLWKEGRRKEAAAVEERCEKINDVPSL 608
           S  ++G+ ++A    +   K  ++P++
Sbjct: 481 SHCEKGQVEDAFGFLDEMVKKGNLPNI 507



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 103/234 (44%), Gaps = 18/234 (7%)

Query: 53  NSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHA 107
           + ++++ S +  R + P +VTH     A   A + D+A+++++++ +N        T ++
Sbjct: 174 DGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSM-ANRGLKPGIVTYNS 232

Query: 108 LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA 167
           +   L K +R  + K +   +          +F  L+  +   G+++  +  + E + R 
Sbjct: 233 VLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRY 292

Query: 168 KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227
                 S++ ++ ++++ G+   A    R++   G +P+   YT++I      G +  AL
Sbjct: 293 VTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEAL 352

Query: 228 EV------FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            V      F  LP          Y  L+ G     R  +A+ LLNEM + G  P
Sbjct: 353 RVRDEMVGFGCLP------DVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTP 400



 Score = 46.6 bits (109), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 12/141 (8%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y+S+L+ L K +R   A  V   M    + PDV++F+ L+  F   G+ K   K + 
Sbjct: 227 IVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYK 286

Query: 540 MVRQNGVEPDAYMFKVLI------------QAYCKYLSNSNLMPDAATKELLKKSLWKEG 587
            ++   V PD   F  LI             AY + +    L+PD     ++     + G
Sbjct: 287 EMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAG 346

Query: 588 RRKEAAAVEERCEKINDVPSL 608
              EA  V +       +P +
Sbjct: 347 SMSEALRVRDEMVGFGCLPDV 367



 Score = 45.4 bits (106), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 101/561 (18%), Positives = 210/561 (37%), Gaps = 61/561 (10%)

Query: 47  RLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLH 106
           R+ V +++SN+L ++L+ R   P +   A R   ++DS +              N  TL+
Sbjct: 117 RVPVPASASNALLAVLS-RAGWPHLAQEAYRLVLSSDSEV--------------NAYTLN 161

Query: 107 ALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR 166
            +     K+       T+I ++         V    L+     +GD++  ++  +    R
Sbjct: 162 IMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANR 221

Query: 167 AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
                  +YN V+    K  +  +A E FR +      P+ R++ ++I     +G++  A
Sbjct: 222 GLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEA 281

Query: 227 LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALER 285
           ++ +  +    +      +  L+  F      D A + L EM+  G  P G    + +  
Sbjct: 282 VKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGG 341

Query: 286 MQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLD 345
               G +  A     EM+    + +V  Y                   +    +    LD
Sbjct: 342 FCRAGSMSEALRVRDEMVGFGCLPDVVTYN----------------TLLNGLCKQHRLLD 385

Query: 346 PKALANTLDE--WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYT 403
            + L N ++E   +P++ +          T L+    R   + E A   F  +  Q    
Sbjct: 386 AEKLLNEMEERGVTPDLCTF---------TTLIHGYCRQ-GNFENALQLFDTLLRQR-LR 434

Query: 404 HDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKA 463
            DV     ++  + R G +   + L   + +  +     T  ++ID +    + + A   
Sbjct: 435 PDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAF-G 493

Query: 464 FHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
           F D+    G +   +    Y+S+++   +          L++M    + PD+ TF+ L++
Sbjct: 494 FLDEMVKKGNLPNIR---TYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIH 550

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMP 571
            +  + +      +F+++ +  V PDA  + ++I  +             K + +S + P
Sbjct: 551 GYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEP 610

Query: 572 DAATKELLKKSLWKEGRRKEA 592
           D  T   L       G  K+A
Sbjct: 611 DRYTYMSLINGHVTAGNSKQA 631


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 116/547 (21%), Positives = 212/547 (38%), Gaps = 60/547 (10%)

Query: 86  LSIMEALKSNPNFSHNQSTLHALATVL---AKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           LS+   L     FS  +  +   +T++   A   R  E + L+  +S S        +  
Sbjct: 365 LSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNA 424

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           ++   S +G +E   +   E + R       ++   +  Y+KTGK  EA + F +++D G
Sbjct: 425 IISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHG 484

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +PN+  YTV+I      G L  AL +F  L  + +    +     + G +   R  EA 
Sbjct: 485 LMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEAL 544

Query: 263 SLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDD 321
            + +E+++ G  P      +L     + G ++ A E   EM       N+  Y    D  
Sbjct: 545 KVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGL 604

Query: 322 EDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLR 381
               D       I    +L   +  K L        P+ V+        ++T     ++ 
Sbjct: 605 CKSGD-------IQRARKLFDGMPEKGL-------EPDSVT--------YST-----MID 637

Query: 382 HFKSPETAWHFFCWVAYQP--GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM-- 437
            +   E     F      P  G     +    ++    + G +E    L  ++   G   
Sbjct: 638 GYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFAT 697

Query: 438 RLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM---LLYSSLLRTLTKCK 494
            L F+T   +ID Y  S K   A + F +       I+K ++M   + Y++++    K  
Sbjct: 698 TLSFNT---LIDGYCKSCKIQEASQLFQE------MIAK-QIMPDHVTYTTVIDWHCKAG 747

Query: 495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK 554
           +  +A  + +EM    ++ D  T++ LMY +   G    V  LF  +   GV+PD   + 
Sbjct: 748 KMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYG 807

Query: 555 VLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKI 602
           ++I A+CK             +    ++      +LL  +L K     EA+ + +   ++
Sbjct: 808 LVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGEL 867

Query: 603 NDVPSLA 609
              PSLA
Sbjct: 868 GLKPSLA 874



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 114/576 (19%), Positives = 216/576 (37%), Gaps = 114/576 (19%)

Query: 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF----------- 195
           YS+S  L+ VL  +  Y   + ++    ++I++  Y + G   EA   F           
Sbjct: 135 YSSSSILDSVLFWFRNYGGSSPVV----FDILIDSYKRMGMLDEAANVFFVAKNDSILIS 190

Query: 196 -------RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
                  R + ++G +PN+ TYT++   L    +++ A   F  +    +K        L
Sbjct: 191 LIRCNSLRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSAL 250

Query: 249 VEGFVGVERFDEAKSLLNEMRDDGKFPGRAM--RVALERMQEMGFIQGANEFLREML--- 303
           ++GF+     DE   + + M   G  P   +   V +  + + G ++ A E L+ M+   
Sbjct: 251 IDGFMREGDIDEVLRIKDVMVSCG-IPINLITYNVLIHGLCKFGKMEKAAEILKGMITLG 309

Query: 304 --PDKRI------KNVRYYEDGS-----DDDEDENDDNNSGVRIAYGVQLKPWLDPK--A 348
             P+ R          R +  G      D+ E  N   ++   ++YG  +      K  +
Sbjct: 310 CKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSA---VSYGAMINGLCHCKDLS 366

Query: 349 LANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSP---ETAWHFFCWVAYQPGYTHD 405
           LAN L E      S L     V++T     ++  + S    E A      ++   G   D
Sbjct: 367 LANKLLE--KMTFSGLKPNVVVYST-----LIMGYASEGRIEEARRLLDGMSCS-GVAPD 418

Query: 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465
           ++    +++ L++ G +E     + +++  G++    T    I  Y  + K   A K F 
Sbjct: 419 IFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFD 478

Query: 466 D--DRTLC-----------GPISKFKLM------------------LLYSSLLRTLTKCK 494
           +  D  L            G      LM                     S+ +  L K  
Sbjct: 479 EMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNG 538

Query: 495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK 554
           R  +A+ V  E+   G+VPDV T+S L+  F  QG+ +   +L   +   G+ P+ +++ 
Sbjct: 539 RVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYN 598

Query: 555 VLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKI 602
            L+   CK             +    L PD+ T   +     K     EA ++       
Sbjct: 599 ALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSL------F 652

Query: 603 NDVPSLALRGHIW--------AVSSADLTRVHSIYR 630
           +++PS  ++ H +             D+ +  +++R
Sbjct: 653 HEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFR 688



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 111/281 (39%), Gaps = 51/281 (18%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF---YGISK 455
           + G   D  A   ++    R G ++ V R+   + S G+ +   T  ++I     +G  +
Sbjct: 237 KTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKME 296

Query: 456 KADAALKAF------HDDRTLCGPISKF--------KLMLL--------------YSSLL 487
           KA   LK         + RT C  I  +         L LL              Y +++
Sbjct: 297 KAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMI 356

Query: 488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE 547
             L  CK    A  +LE+M FSG+ P+V  +S L+  +A +G  +  ++L   +  +GV 
Sbjct: 357 NGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVA 416

Query: 548 PDAYMFKVLIQAYCK---------YL---SNSNLMPDAATKELLKKSLWKEGRRKEAAA- 594
           PD + +  +I    K         YL       L PDA T         K G+  EAA  
Sbjct: 417 PDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKY 476

Query: 595 ----VEERCEKINDVPSLALRGHIWAVSSADLTRVHSIYRN 631
               ++      N + ++ + GH  A    +L    SI+R+
Sbjct: 477 FDEMLDHGLMPNNPLYTVLINGHFKA---GNLMEALSIFRH 514



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 93/235 (39%), Gaps = 15/235 (6%)

Query: 42  LIDSI-RLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSH 100
           LIDS  R+ +   ++N      ND +L   I  ++LRS                      
Sbjct: 162 LIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLRSM--------------GEKGLVP 207

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T   +   L +++R +E K    ++  +           L+  +   GD++ VL   
Sbjct: 208 NTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIK 267

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           +        ++  +YN+++    K GK  +A E  + +I  G  PNSRT+ ++IE     
Sbjct: 268 DVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCRE 327

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             +  ALE+   +    +  ++  Y  ++ G    +    A  LL +M   G  P
Sbjct: 328 HNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKP 382



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 93/228 (40%), Gaps = 7/228 (3%)

Query: 79  APNADSALSI---MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLN 135
           A N   ALSI   + AL   P+     + +H L     K+ R  E   +  ++     + 
Sbjct: 502 AGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLL----KNGRVQEALKVFSELKEKGLVP 557

Query: 136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF 195
               + +L+  +   G++E      +E   +    +   YN ++    K+G    A + F
Sbjct: 558 DVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLF 617

Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
             + ++G  P+S TY+ MI+       +  A  +F  +P   ++  S  Y  LV G    
Sbjct: 618 DGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKE 677

Query: 256 ERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREML 303
              ++A +L  EM   G     +    ++   +   IQ A++  +EM+
Sbjct: 678 GDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMI 725


>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 582

 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 88/193 (45%), Gaps = 1/193 (0%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L K +   E   L  ++   K +   V + +L+      G +  VL   +E   R +  +
Sbjct: 360 LCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPN 419

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
             +YN ++    K     +A+     + D+G  P+  TYTV+I+ L   GKL+ A +VF 
Sbjct: 420 IITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFE 479

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMG 290
            L +         Y ++++GF     FD A +LL++M D+G  P  +   + +  + E  
Sbjct: 480 DLLVKGYNLDVYTYTVMIQGFCVKGLFDAALALLSKMEDNGCIPNAKTYEIVILSLFEKD 539

Query: 291 FIQGANEFLREML 303
               A + LREM+
Sbjct: 540 ENDMAEKLLREMI 552



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 98/461 (21%), Positives = 178/461 (38%), Gaps = 65/461 (14%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++NI+++ +++ G N  +   F +++ +G  PN+ T+  +I+ L   G +  AL     +
Sbjct: 107 TFNILINCFSQLGLNSLSFSVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKV 166

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF--PGRAM-RVALERMQEMG 290
                      Y  L+ G   V R   A  LL   R DGK   P   M  + ++ M +  
Sbjct: 167 VAQGFHLDQVSYGTLINGLCKVGRITAALQLLK--RVDGKLVQPNAVMYNMIIDNMCKAK 224

Query: 291 FIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWL-DPKAL 349
            +  A +   +M+  KRI         S DD   N        + YG  +   L +   L
Sbjct: 225 LVNDAFDLYSQMVA-KRI---------SPDDFTCN-------SLIYGFCIMGQLKEAVGL 267

Query: 350 AN--TLDEWSPEV--VSLLADA----------KFVWTTRLVCKVLRHFKSPETAWHFFCW 395
            +   L+  +P +   S+L DA          K +    +   ++    +  +    +C 
Sbjct: 268 LHKMILENINPRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCL 327

Query: 396 V------------AYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFST 443
           V                G   +V +   M+  L +   V+    L  ++R   +     T
Sbjct: 328 VKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVT 387

Query: 444 IRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVL 503
              +ID  G   K    LK   +      P +    ++ Y+S+L  L K      AI +L
Sbjct: 388 YNSLIDGLGKLGKISCVLKLVDEMHDRGQPPN----IITYNSILDALCKNHHVDKAIALL 443

Query: 504 EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC-- 561
             +   GI PD+ T++ L+      G  +  QK+F  +   G   D Y + V+IQ +C  
Sbjct: 444 TNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVK 503

Query: 562 ----------KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                       + ++  +P+A T E++  SL+++     A
Sbjct: 504 GLFDAALALLSKMEDNGCIPNAKTYEIVILSLFEKDENDMA 544



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 86/204 (42%), Gaps = 16/204 (7%)

Query: 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465
           +Y    ++    + G V+    ++       + L   T   ++D Y + K+ + A   F 
Sbjct: 280 MYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIF- 338

Query: 466 DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF 525
           D     G I+  +    Y++++  L K K   +A+N+ EEM    I+P+V T++ L+   
Sbjct: 339 DSMASRGVIANVQS---YTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGL 395

Query: 526 ALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDA 573
              G    V KL   +   G  P+   +  ++ A CK             L +  + PD 
Sbjct: 396 GKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDM 455

Query: 574 ATKELLKKSLWKEGRRKEAAAVEE 597
            T  +L K L + G+ ++A  V E
Sbjct: 456 YTYTVLIKGLCQSGKLEDAQKVFE 479



 Score = 46.6 bits (109), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 50/107 (46%)

Query: 169 LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALE 228
           +L   +YN +M  Y    +  +A + F  +   G I N ++YT MI  L  +  +D A+ 
Sbjct: 312 ILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVN 371

Query: 229 VFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +F  +   +I      Y  L++G   + +      L++EM D G+ P
Sbjct: 372 LFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPP 418



 Score = 46.2 bits (108), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 95/226 (42%), Gaps = 11/226 (4%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           + G+  +      ++  L   GH+        K+ + G  L   +   +I+      +  
Sbjct: 133 KKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQVSYGTLINGLCKVGRIT 192

Query: 459 AALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
           AAL+     D  L  P +     ++Y+ ++  + K K   DA ++  +M+   I PD  T
Sbjct: 193 AALQLLKRVDGKLVQPNA-----VMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFT 247

Query: 518 FSGLMYHFALQGDEK-IVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--YLSNSNLMPDAA 574
            + L+Y F + G  K  V  L  M+ +N + P  Y F +L+ A+CK   +  + +M    
Sbjct: 248 CNSLIYGFCIMGQLKEAVGLLHKMILEN-INPRMYTFSILVDAFCKEGKVKEAKMMLGVT 306

Query: 575 TKELLKKSLWKEGRRKEAAAVEERCEKINDV-PSLALRGHIWAVSS 619
            K+ +   +       +   + +   K  D+  S+A RG I  V S
Sbjct: 307 MKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQS 352



 Score = 45.8 bits (107), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 41/201 (20%), Positives = 81/201 (40%), Gaps = 1/201 (0%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T   L     K  +  E K ++G       +   V + +LM  Y    ++      ++  
Sbjct: 282 TFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSM 341

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
             R  + + +SY  +++   K     EAV  F ++     IPN  TY  +I+ L  LGK+
Sbjct: 342 ASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKI 401

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVA 282
              L++   +           Y  +++        D+A +LL  ++D G  P      V 
Sbjct: 402 SCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVL 461

Query: 283 LERMQEMGFIQGANEFLREML 303
           ++ + + G ++ A +   ++L
Sbjct: 462 IKGLCQSGKLEDAQKVFEDLL 482



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 101/223 (45%), Gaps = 6/223 (2%)

Query: 51  RSNSSNSLSSLLNDRLLDPFIVT-----HALRSAPNADSALSIMEALKSNPNFSHNQSTL 105
            +N  +S +SLL+ +   P I+       +L  A +  +ALS+ + ++ N   S +  T 
Sbjct: 50  ENNLISSFNSLLHHKNPTPPIIQFNKILSSLVKAKHHSTALSLHQQMELNGIVS-DFFTF 108

Query: 106 HALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQ 165
           + L    ++   N    ++ G I    F   ++ F  L++     G +   L+  ++   
Sbjct: 109 NILINCFSQLGLNSLSFSVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVA 168

Query: 166 RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
           +   L   SY  +++   K G+   A++  ++V  +   PN+  Y ++I+++     ++ 
Sbjct: 169 QGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVND 228

Query: 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           A +++S +   RI         L+ GF  + +  EA  LL++M
Sbjct: 229 AFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKM 271



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 43/79 (54%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           ++ +L +L K K    A+++ ++M  +GIV D  TF+ L+  F+  G   +   +F  + 
Sbjct: 73  FNKILSSLVKAKHHSTALSLHQQMELNGIVSDFFTFNILINCFSQLGLNSLSFSVFGKIL 132

Query: 543 QNGVEPDAYMFKVLIQAYC 561
           + G +P+A  F  LI+  C
Sbjct: 133 KKGFDPNAITFNTLIKGLC 151


>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 505

 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 81/420 (19%), Positives = 167/420 (39%), Gaps = 35/420 (8%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           + +++Q +   GD++  L  + +  +   +    ++NI++   AK  +  EA   F  + 
Sbjct: 68  YSSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMF 127

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
                P+  TYT++I  L  +G++D+ +++F ++     +     Y  ++  F    R D
Sbjct: 128 KLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVD 187

Query: 260 EAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGS 318
           EA  +  +M   G  P      + ++   + G ++ A +F+ +    +   N   Y    
Sbjct: 188 EACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLERAFDFVGK---SRSFTNEVTYNSLL 244

Query: 319 DDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCK 378
                + D       I   ++L   +  K L       S E+   +   +  W  R+   
Sbjct: 245 SSLGRKGD-------IQGLMELFGQMKAKGLV------SNELTYAILIERLGWAGRV--- 288

Query: 379 VLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR 438
                   E  W  +  +       +D+  +  +L  L++ G VE    L   ++  G+ 
Sbjct: 289 --------EDVWQLYLEMV-DNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLN 339

Query: 439 LPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDF 497
               T  ++I+  G + K DAA     + +   C P      ++ Y++L+ +  K     
Sbjct: 340 ADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPN-----IITYNTLISSYGKWSNLS 394

Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
            A  +  EM   G+ P+V ++S L+  F   G       LF  ++  G  P+   + +LI
Sbjct: 395 AATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLLI 454



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 84/198 (42%), Gaps = 1/198 (0%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T++ +   L+K+ R      L  D+        +V +  L+     +G L+   +   E 
Sbjct: 309 TINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLLEM 368

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
            +     +  +YN ++S Y K      A   F ++ + G  PN  +Y+ +IE     G+ 
Sbjct: 369 EENGCAPNIITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRT 428

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
           D+A+ +F  +           Y +L++  +   RF  A   L EMRD G   G+  +  L
Sbjct: 429 DAAISLFREMKAEGCPPNHVTYNLLIDCLIRAGRFGAAMEYLREMRDAGCQMGKVTKSLL 488

Query: 284 ERMQEMGFIQGANEFLRE 301
            R+    +++ A  F +E
Sbjct: 489 VRIPPQ-YMEEAQSFFQE 505



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 87/423 (20%), Positives = 174/423 (41%), Gaps = 49/423 (11%)

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
           + R KL  T+ +N ++ +Y +     +A++T      EG  P + TY+ MI+  +  G +
Sbjct: 23  KDRTKL-DTQLFNTLIHIYGEANMMEKALQTLAAFTKEGGRPTAYTYSSMIQVFMKGGDV 81

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
            + L ++  +   +       + IL++     ++ +EA ++  +M      P       L
Sbjct: 82  QNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLNVSPDVYTYTIL 141

Query: 284 ER-MQEMGFIQGANEFLREMLPDKRIKNVRYYED-----GSDDDEDENDDNNSGVRIAYG 337
            R +  +G I    +    M       N+  Y       GS    DE  D        + 
Sbjct: 142 IRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACD-------IFQ 194

Query: 338 VQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVA 397
             ++  L P A+            ++L DA F  T +L           E A+ F   V 
Sbjct: 195 QMVQKGLQPDAV----------TYNILIDA-FGKTGQL-----------ERAFDF---VG 229

Query: 398 YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA 457
               +T++V     +L+ L R G ++ +  L  ++++ G+     T  ++I+  G + + 
Sbjct: 230 KSRSFTNEV-TYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLGWAGRV 288

Query: 458 DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
           +   + + +   +     K+ ++ + +++L  L+K  R   A  + ++M F G+  D  T
Sbjct: 289 EDVWQLYLE---MVDNDIKYDIVTI-NNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVT 344

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKE 577
           ++ L+      G       L   + +NG  P+   +  LI +Y K+   SNL   AAT+ 
Sbjct: 345 YNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSYGKW---SNL--SAATRL 399

Query: 578 LLK 580
            L+
Sbjct: 400 FLE 402



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 3/172 (1%)

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
           K+  V++N  N++   S +G +E     + + + +     T +YNI+++   + GK   A
Sbjct: 304 KYDIVTIN--NVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAA 361

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
                ++ + G  PN  TY  +I        L +A  +F  +    +      Y  L+EG
Sbjct: 362 GALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEG 421

Query: 252 FVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
           F    R D A SL  EM+ +G  P      + ++ +   G    A E+LREM
Sbjct: 422 FGKAGRTDAAISLFREMKAEGCPPNHVTYNLLIDCLIRAGRFGAAMEYLREM 473



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 88/204 (43%), Gaps = 4/204 (1%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           V HA  SA   D A  I + +        +  T + L     K+ +       +G   S 
Sbjct: 176 VMHAFGSAGRVDEACDIFQQM-VQKGLQPDAVTYNILIDAFGKTGQLERAFDFVG--KSR 232

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
            F N  V + +L+      GD++ ++  + + + +  + +  +Y I++      G+  + 
Sbjct: 233 SFTN-EVTYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLGWAGRVEDV 291

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
            + + +++D     +  T   +++ L   G++++A E+F  +    +   +  Y IL+ G
Sbjct: 292 WQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILING 351

Query: 252 FVGVERFDEAKSLLNEMRDDGKFP 275
                + D A +LL EM ++G  P
Sbjct: 352 LGRAGKLDAAGALLLEMEENGCAP 375



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 88/224 (39%), Gaps = 43/224 (19%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYG---ISKKADAALKAFHDDR 468
           MLT+L      + V RL+  ++ D  +L       +I  YG   + +KA   L AF  + 
Sbjct: 1   MLTLLGAARRYDDVQRLVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEG 60

Query: 469 ------TLCGPISKF-------KLMLLYSSLLR---------------TLTKCKRDFDAI 500
                 T    I  F         +L+Y  +L+               +L K  +  +A 
Sbjct: 61  GRPTAYTYSSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEAC 120

Query: 501 NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
           NV  +M    + PDV T++ L+      G    V KLF  +   G +P+ + +  ++ A+
Sbjct: 121 NVFGDMFKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAF 180

Query: 561 ---------C---KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                    C   + +    L PDA T  +L  +  K G+ + A
Sbjct: 181 GSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLERA 224



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 24/189 (12%)

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
           L   G VE V +L  ++  + ++    TI  ++D    + + +AA + F D         
Sbjct: 282 LGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQD--------M 333

Query: 476 KFKLM----LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
           KFK +    + Y+ L+  L +  +   A  +L EM  +G  P++ T++ L+  +    + 
Sbjct: 334 KFKGLNADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNL 393

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELL 579
               +LF  +++ GV P+   +  LI+ + K             +      P+  T  LL
Sbjct: 394 SAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLL 453

Query: 580 KKSLWKEGR 588
              L + GR
Sbjct: 454 IDCLIRAGR 462


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 120/606 (19%), Positives = 230/606 (37%), Gaps = 109/606 (17%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHAL----------ATVLAKS- 115
           L P  V   L+S  N  SALSI +++   P +SH     H +          A   AK+ 
Sbjct: 8   LSPKRVIKLLKSEKNPHSALSIFDSVTRFPGYSHTPYVFHHILKRLFDPKLVAHAYAKNS 67

Query: 116 ---------QRNHELKTLIGDISS-SKFLNVSVN------FMNLMQWYSTSGDLELVLST 159
                    QR HE+      I S +  LN  +         +   ++ T G L   L T
Sbjct: 68  MPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMG-LSPNLQT 126

Query: 160 WN----------EYRQRAKLLS----------TESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +N          ++ +  +LL+            SY  +++  AK G   +A++ F ++ 
Sbjct: 127 YNILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMP 186

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL---PLMRIKRTSKQYLILVEGFVGVE 256
           + G  P+   Y ++I+     G + +A E++  L   P   +      Y +++ G     
Sbjct: 187 ERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGP--SVYPNIPSYNVMINGLCKCG 244

Query: 257 RFDEAKSLLNEMRDDGKFPGRAM---RVALERMQEMGFIQGANEFLREML-----PDKRI 308
           +FDE+  + + M+ + +  G+ +      +  +   G + GA    +EM      PD  +
Sbjct: 245 KFDESFEIWHRMKKNER--GQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVV 302

Query: 309 KNVR---YYEDGSDDDEDE--NDDNNSGVR--IAYGVQLKPWLDPKALANTLDEWS--PE 359
            N     Y   G  ++  E        G R  ++Y + ++   +   +   +  W   PE
Sbjct: 303 YNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDEAISIWELLPE 362

Query: 360 VVSLLADAKFVWTTRLVCK------VLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKML 413
                    +      +CK       L   +  E                 D +A   M+
Sbjct: 363 KDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDL-----------DTFAYSSMI 411

Query: 414 TILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGP 473
             L R G ++ V  ++ ++   G +        +I+ +  + K + AL+ F +       
Sbjct: 412 NGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGN------M 465

Query: 474 ISK--FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
           +SK  F  ++ Y++L+  L+K +R  +A  +++EM+  G  P++ T+S LM         
Sbjct: 466 VSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKL 525

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELL 579
            +   L+    + G +PD  M  ++I   C              +   N +P+  T   L
Sbjct: 526 DMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTL 585

Query: 580 KKSLWK 585
            +  +K
Sbjct: 586 MEGFYK 591



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/172 (18%), Positives = 75/172 (43%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T + L   L+K++R  E   L+ ++    +    + +  LM        L++ L+ W + 
Sbjct: 476 TYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQA 535

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
            ++      + +NI++     +GK  +A++ + ++     +PN  T+  ++E    +   
Sbjct: 536 LEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDF 595

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           + A +++  +    ++     Y I ++G     R  +A   LN+  D G  P
Sbjct: 596 ERASKIWDHILQYGLQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLP 647



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 106/267 (39%), Gaps = 38/267 (14%)

Query: 364 LADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKML-----TILAR 418
           +A A    + + V K+L+  K+P +A   F  V   PGY+H  Y    +L       L  
Sbjct: 1   MASAPKSLSPKRVIKLLKSEKNPHSALSIFDSVTRFPGYSHTPYVFHHILKRLFDPKLVA 60

Query: 419 HGHVE--LVDRLIAKLR--------SDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR 468
           H + +  + D+ +   +          G+R   S +  +I+    S K D A   F    
Sbjct: 61  HAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIE----SNKWDEAESFFLYFE 116

Query: 469 TLCGPISKFKLMLLYSSLLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
           T+          L   ++L  ++  K+ FD A  +L  M   G  PDV ++  L+   A 
Sbjct: 117 TM-----GLSPNLQTYNILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAK 171

Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK-------------YLSNSNLMPDAA 574
            G      KLF  + + GV PD   + +LI  + K              L   ++ P+  
Sbjct: 172 NGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIP 231

Query: 575 TKELLKKSLWKEGRRKEAAAVEERCEK 601
           +  ++   L K G+  E+  +  R +K
Sbjct: 232 SYNVMINGLCKCGKFDESFEIWHRMKK 258


>gi|449460167|ref|XP_004147817.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Cucumis sativus]
          Length = 942

 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 95/485 (19%), Positives = 177/485 (36%), Gaps = 70/485 (14%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L++     G +E  L  WN   +R    +  +Y  ++  + K G    A+  ++ 
Sbjct: 467 VTYNTLLKNLFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKD 526

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
            + +G   +   Y  MI     + KL  A E+F  +  +        Y  L++G+  V  
Sbjct: 527 ALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVGN 586

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVALE----RMQEMGFIQGANEFLREMLPDKRIKNVRY 313
             EA  L +    DG      M  +L     R +E+   Q  N  L EM   +   NV  
Sbjct: 587 LVEALKLKDMSERDGISSSTEMYNSLITGVFRSEEL---QKLNGLLAEMKNRELSPNV-- 641

Query: 314 YEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTT 373
                               + YG  +  W D   +    + +   +   +A    +  +
Sbjct: 642 --------------------VTYGSLIAGWCDKGMMDKAYNAYFKMIDKGIA-PNIIIGS 680

Query: 374 RLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
           ++V  + RH K  E            P   H  +++E   + L    H+E   +++    
Sbjct: 681 KIVSSLYRHGKIDEANLILHQIADIDPIAAH-AHSVELPKSDLR---HLE-TQKIVDSFG 735

Query: 434 SDGMRLPFS-TIRLIIDFYGISKK----------ADAALKAFHDDRTLCGPISKFKLMLL 482
              M +P S  I   I   G+ K           +D  LK F  D               
Sbjct: 736 KKAMSIPISNNIVYNIAITGLCKSKNIDDVRRILSDLLLKGFCPDN------------YT 783

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y SL+   +   +  +A  + ++MI +G+VP++  ++ L+      G+    ++LF+ + 
Sbjct: 784 YCSLIHACSAVGKVNEAFCLRDDMINAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLA 843

Query: 543 QNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRK 590
           + G+ P    +  LI  YCK             +    + P + T   L   L+ EG+ +
Sbjct: 844 RKGLSPTVVTYNTLIDGYCKGGRTTEALELKDKMREEGICPSSITYSTLIHGLYMEGKSE 903

Query: 591 EAAAV 595
           ++  +
Sbjct: 904 QSVGL 908



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 116/570 (20%), Positives = 226/570 (39%), Gaps = 65/570 (11%)

Query: 35  LYLRRAQLIDSI-RLAV--RSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEA 91
           L L +  L+D I RL V  R ++  +LS   ++ L+D  +V   LR  P  D++L   + 
Sbjct: 66  LKLSQPDLVDRISRLLVLRRFDALANLSFSFSNELMD--LVLRNLRLNP--DASLEFFKL 121

Query: 92  LKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD---------ISSS----------K 132
               P F  + S+   +  +L++++   E++  + +         I+S+          +
Sbjct: 122 ASKQPKFRPDVSSYCKIVHILSRARMYKEVRVYLNELVVLCKNNYIASAVWDELVSVYRE 181

Query: 133 FLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV 192
           F      F  +++ ++  G  +  L  ++   +  ++ S  S N ++S   + G+ F+A+
Sbjct: 182 FSFSPTVFDMILKVFAEKGMTKFALCVFDNMGKCGRVPSLRSCNSLLSNLVQNGEAFKAL 241

Query: 193 ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
             + Q+I  G +P+  +YT+M+      G++D A      +     +     Y  L++G+
Sbjct: 242 LVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEAFNFVKEMERSCCEPNVVTYNSLIDGY 301

Query: 253 VGVERFDEAKSLLNEMRDDGK----------FPGRAMRVALERMQEM-GFIQGANEFLRE 301
           V +     AK +L  M + G             G   R  +E+ +++ G +   N F+ E
Sbjct: 302 VSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCKRGQMEQAEKLIGCMMEKNLFVDE 361

Query: 302 MLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYG-VQLKPWLDPKALANTLDEWSPEV 360
            +    I    Y   G  DD     D    V +    V     ++       +++ +  +
Sbjct: 362 HVYGVLIH--AYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAAEVL 419

Query: 361 VSL----LADAKFVWTTRL--VCK---VLRHFKSPETAWHFFCWVAYQPGYTHDVYALEK 411
           VS+    L    + + T L   CK    ++ FK         C   +  G    V     
Sbjct: 420 VSMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFK--------LCDEMHNKGVNFTVVTYNT 471

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           +L  L   GHVE    +   +   G+     T   ++D +      D A+  + D     
Sbjct: 472 LLKNLFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKD----- 526

Query: 472 GPISK--FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
             +SK   K + LY++++    K ++   A  +  +M   G  PD  T+  L+  +   G
Sbjct: 527 -ALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVG 585

Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
           +     KL  M  ++G+     M+  LI  
Sbjct: 586 NLVEALKLKDMSERDGISSSTEMYNSLITG 615



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 116/266 (43%), Gaps = 46/266 (17%)

Query: 364 LADAKFVWTTRLVCKVLRHFK-SPETAWHFFCWVAYQPGYTHDVYALEKMLTILAR---H 419
           LA+  F ++  L+  VLR+ + +P+ +  FF   + QP +  DV +  K++ IL+R   +
Sbjct: 89  LANLSFSFSNELMDLVLRNLRLNPDASLEFFKLASKQPKFRPDVSSYCKIVHILSRARMY 148

Query: 420 GHV-----ELV-------------DRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL 461
             V     ELV             D L++  R        +   +I+  +        AL
Sbjct: 149 KEVRVYLNELVVLCKNNYIASAVWDELVSVYRE--FSFSPTVFDMILKVFAEKGMTKFAL 206

Query: 462 KAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL 521
             F D+   CG +   +     +SLL  L +    F A+ V E+MI  GI+PD+ +++ +
Sbjct: 207 CVF-DNMGKCGRVPSLRSC---NSLLSNLVQNGEAFKALLVYEQMIALGILPDIFSYTIM 262

Query: 522 MYHFALQGDEKIVQKLFSMVRQ---NGVEPDAYMFKVLIQAY------C------KYLSN 566
           +  +  +G    V + F+ V++   +  EP+   +  LI  Y      C        +S 
Sbjct: 263 VNAYCKEGR---VDEAFNFVKEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSE 319

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEA 592
             +  ++ T  LL K   K G+ ++A
Sbjct: 320 KGIPENSRTYTLLIKGYCKRGQMEQA 345



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 70/164 (42%)

Query: 110 TVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKL 169
           T L KS+   +++ ++ D+    F   +  + +L+   S  G +       ++      +
Sbjct: 754 TGLCKSKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRDDMINAGLV 813

Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
            +   YN +++   K+G    A   F ++  +G  P   TY  +I+     G+   ALE+
Sbjct: 814 PNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGGRTTEALEL 873

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
              +    I  +S  Y  L+ G     + +++  LLNEM   GK
Sbjct: 874 KDKMREEGICPSSITYSTLIHGLYMEGKSEQSVGLLNEMMKAGK 917



 Score = 43.5 bits (101), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 65/131 (49%), Gaps = 4/131 (3%)

Query: 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
           S +HA + V     + +E   L  D+ ++  +   V +  L+     SG+L+     +N+
Sbjct: 786 SLIHACSAV----GKVNEAFCLRDDMINAGLVPNIVVYNALINGLCKSGNLDRARRLFNK 841

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
             ++    +  +YN ++  Y K G+  EA+E   ++ +EG  P+S TY+ +I  L   GK
Sbjct: 842 LARKGLSPTVVTYNTLIDGYCKGGRTTEALELKDKMREEGICPSSITYSTLIHGLYMEGK 901

Query: 223 LDSALEVFSAL 233
            + ++ + + +
Sbjct: 902 SEQSVGLLNEM 912



 Score = 39.3 bits (90), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 98/502 (19%), Positives = 185/502 (36%), Gaps = 53/502 (10%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           ++  Y   G ++   +   E  +     +  +YN ++  Y   G    A +    + ++G
Sbjct: 262 MVNAYCKEGRVDEAFNFVKEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKG 321

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
              NSRTYT++I+     G+++ A ++   +    +      Y +L+  +    R D+A 
Sbjct: 322 IPENSRTYTLLIKGYCKRGQMEQAEKLIGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDAL 381

Query: 263 SLLNEMRDDG-KFPGRAMRVALERMQEMGFIQGANEFLREM-----LPDKRIKNVRYYED 316
            + + M   G K         +    ++G +  A E L  M      PD    N     D
Sbjct: 382 RIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAAEVLVSMKDWNLKPDSYGYNTLL--D 439

Query: 317 GSDDDED-------ENDDNNSGVR---IAYGVQLKPWLDPKALANTLDEWSPEVVSLLAD 366
           G    ED        ++ +N GV    + Y   LK       + + L  W+      +A 
Sbjct: 440 GFCKQEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNLFHVGHVEHALHIWNLMHKRGVAP 499

Query: 367 AKFVWTTRLVCKVLRHFKSPETAWHFFCWV-AYQPGYTHDVYALEKMLTILARHGHVELV 425
            +  + T L       FK          W  A   G+T  +     M+    +   +   
Sbjct: 500 NEVTYCTLLD----AFFKVGTFDRAMMIWKDALSKGFTKSITLYNTMICGFCKMEKLVQA 555

Query: 426 DRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSS 485
             +  K++  G      T R +ID Y        ALK    D +    IS    M  Y+S
Sbjct: 556 QEIFLKMKELGFPPDEITYRTLIDGYCKVGNLVEALKL--KDMSERDGISSSTEM--YNS 611

Query: 486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
           L+  + + +       +L EM    + P+V T+  L+  +    D+ ++ K +       
Sbjct: 612 LITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLIAGWC---DKGMMDKAY------- 661

Query: 546 VEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDV 605
              +AY FK++         +  + P+      +  SL++ G+  EA  +     +I D+
Sbjct: 662 ---NAY-FKMI---------DKGIAPNIIIGSKIVSSLYRHGKIDEANLI---LHQIADI 705

Query: 606 PSLALRGHIWAVSSADLTRVHS 627
             +A   H   +  +DL  + +
Sbjct: 706 DPIAAHAHSVELPKSDLRHLET 727


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 78/175 (44%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T +++   + K+ +  + + +  ++         V++  L+  Y  +G     LS +
Sbjct: 259 NLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVF 318

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            E  Q+  +    ++  ++ V  K G    AV   RQ+ + G   N  T+T +I+     
Sbjct: 319 AEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKK 378

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           G LD AL     +   RIK +   Y  L+ G+  V R DEA+ LL+EM   G  P
Sbjct: 379 GFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKP 433



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 22/225 (9%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA- 457
           Q G   DV     ++ ++ + G++E    L+ ++R  G+++   T   +ID  G  KK  
Sbjct: 323 QKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALID--GFCKKGF 380

Query: 458 -DAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
            D AL A    +       + K  ++ Y++L+       R  +A  +L EM   G+ PDV
Sbjct: 381 LDDALLAVRGMKQ-----CRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDV 435

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC--KYLSNSN----- 568
            T+S ++  +    D     +L   + + GV PDA  +  LI+  C  K LS+++     
Sbjct: 436 VTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKN 495

Query: 569 -----LMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
                L PD  T   L     KEG  + A ++ ++  K   +P +
Sbjct: 496 MIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDV 540



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 6/163 (3%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   +V     ++    R G V+  +RL+  +R  G++    T   +++    + K + A
Sbjct: 220 GCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDA 279

Query: 461 LKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
            K F +  R    P       + Y++L+    K     +A++V  EM   GI+PDV TF+
Sbjct: 280 RKVFDEMVREGLAPDG-----VSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFT 334

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            L++     G+ +    L   +R+ G++ +   F  LI  +CK
Sbjct: 335 SLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCK 377



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 12/125 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+R L       +A+++L +M  +G  P+V T++ L+  F   G+    ++L  M+R
Sbjct: 193 YNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMR 252

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
           + G++P+   F  ++   CK             +    L PD  +   L     K G   
Sbjct: 253 EGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSH 312

Query: 591 EAAAV 595
           EA +V
Sbjct: 313 EALSV 317



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 42/212 (19%), Positives = 87/212 (41%), Gaps = 6/212 (2%)

Query: 69  PFIVT-----HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT 123
           P +VT     H +  A N + A++++  ++       N+ T  AL     K     +   
Sbjct: 328 PDVVTFTSLIHVMCKAGNLERAVTLVRQMRER-GLQMNEVTFTALIDGFCKKGFLDDALL 386

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
            +  +   +     V +  L+  Y   G ++      +E   +       +Y+ ++S Y 
Sbjct: 387 AVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYC 446

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           K      A E  +Q++++G +P++ TY+ +I  L    +L  A  +F  +  + ++    
Sbjct: 447 KNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEF 506

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            Y  L++G       + A SL ++M   G  P
Sbjct: 507 TYTSLIDGHCKEGNVESALSLHDKMVKAGVLP 538



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 40/80 (50%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YSSL+R L   KR  DA  + + MI  G+ PD  T++ L+     +G+ +    L   + 
Sbjct: 473 YSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMV 532

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
           + GV PD   + VLI    K
Sbjct: 533 KAGVLPDVVTYSVLINGLSK 552


>gi|4262245|gb|AAD14538.1| predicted by genscan and genefinder [Arabidopsis thaliana]
          Length = 248

 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 71/158 (44%)

Query: 68  DPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD 127
           D  I+   L++ P    A            F H+  T   +  +  ++ R   + ++   
Sbjct: 88  DSHIINRVLKAHPPMQKAWLFFNWAAQIKGFKHDHFTYTTMLDIFGEAGRIQSMYSVFHL 147

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           +     L  +V + +L+ W S+SGD++  +  W E R      +  SY   M +    G+
Sbjct: 148 MKEKGVLIDTVTYTSLIHWVSSSGDVDGAMRLWEEMRDNGCEPTVVSYTAYMKMLFADGR 207

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
             EA E +++++     PN  TYTV++E+LV  G+L S
Sbjct: 208 VEEATEVYKEMLRSRVSPNCHTYTVLMEYLVATGQLHS 245



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 74/160 (46%), Gaps = 6/160 (3%)

Query: 371 WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIA 430
           W + ++ +VL+     + AW FF W A   G+ HD +    ML I    G ++ +  +  
Sbjct: 87  WDSHIINRVLKAHPPMQKAWLFFNWAAQIKGFKHDHFTYTTMLDIFGEAGRIQSMYSVFH 146

Query: 431 KLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR-TLCGPISKFKLMLLYSSLLRT 489
            ++  G+ +   T   +I +   S   D A++ + + R   C P      ++ Y++ ++ 
Sbjct: 147 LMKEKGVLIDTVTYTSLIHWVSSSGDVDGAMRLWEEMRDNGCEPT-----VVSYTAYMKM 201

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
           L    R  +A  V +EM+ S + P+  T++ LM +    G
Sbjct: 202 LFADGRVEEATEVYKEMLRSRVSPNCHTYTVLMEYLVATG 241


>gi|449461223|ref|XP_004148341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
 gi|449507064|ref|XP_004162923.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
          Length = 844

 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 103/501 (20%), Positives = 199/501 (39%), Gaps = 75/501 (14%)

Query: 85  ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
           AL+I++ ++ N N + +  T + L     ++    E  T+I  ++    +  +V +  ++
Sbjct: 357 ALNILKEMEDN-NCTLDSVTYNELVAAYVRAGFYEEGATVIDTMTRKGVMPNAVTYTTVI 415

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204
             Y  +G     L  +N+ ++   + +  +YN ++++  K  ++ E ++    +   G  
Sbjct: 416 NAYGRAGKEVKALQLFNQMKKSGCVPNVCTYNSILALLGKKSRSEEMIKILSDMRINGCP 475

Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY--LILVEGFVGVERFDEAK 262
           PN  T+  ++    + GK      VF  +     +     +  LI   G  G E  D AK
Sbjct: 476 PNRITWNTLLAMCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLISAYGRCGSE-LDAAK 534

Query: 263 SLLNEMRDDGKFPG----RAMRVALER-------------MQEMGFIQGANEFLREMLPD 305
            + +EM   G  P      A+  AL R             M+  GF      F   +   
Sbjct: 535 -MYDEMMKAGFTPCATTYNALLNALARRGDWKAAESVLLDMRNKGFKPNETSFSLMLHCY 593

Query: 306 KRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKP-WLDPKALANTLDEWSPEVVSLL 364
            +  NVR  E    D               Y  Q+ P W+    L  TL         +L
Sbjct: 594 AKGGNVRGLERIGKD--------------IYDGQIFPSWV----LLRTL---------IL 626

Query: 365 ADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVEL 424
           A+ K        C+ +R     E A+       Y+P    D+     ML+I A++   E 
Sbjct: 627 ANFK--------CRAVRGM---ERAFEELMKNGYKP----DMVIFNSMLSIFAKNNMYER 671

Query: 425 VDRLIAKLRSDGMRLPFSTIRLIIDFY---GISKKADAALKAFHDDRTLCGPISKFKLML 481
             +++  +R  G++    T   +++ Y   G   KA+  LK             +   ++
Sbjct: 672 AQKMLDLIRESGLQPDLVTYNSLMNMYARRGECWKAEEILKGLIKS-------GESPDLV 724

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
            Y+++++   +     +AI V+ EM   GI P + T++  +  +A +G    V ++ S +
Sbjct: 725 SYNTIIKGFCRQGLMQEAIRVMSEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVISYM 784

Query: 542 RQNGVEPDAYMFKVLIQAYCK 562
            Q   +P+   +K+++  YCK
Sbjct: 785 IQKNCKPNELTYKIIVDGYCK 805



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 110/526 (20%), Positives = 207/526 (39%), Gaps = 73/526 (13%)

Query: 62  LNDRLLDPFIVTHAL------RSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKS 115
           + D  L P +VT+ +      +   + D  L +++ ++ N     ++ T   + +   + 
Sbjct: 258 MKDCGLSPSLVTYNVMLDVYGKMGRSWDKILDLLDEMR-NEGLQFDEFTCSTVISACGRE 316

Query: 116 QRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
              +E K    ++ SS +   +V +  L+Q +  +G     L+   E       L + +Y
Sbjct: 317 GLINEAKEFFVELKSSGYEPGTVTYNALLQVFGKAGIYSEALNILKEMEDNNCTLDSVTY 376

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           N +++ Y + G   E       +  +G +PN+ TYT +I      GK   AL++F+ +  
Sbjct: 377 NELVAAYVRAGFYEEGATVIDTMTRKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKK 436

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQG 294
                    Y  ++       R +E   +L++MR +G  P R      L    + G  + 
Sbjct: 437 SGCVPNVCTYNSILALLGKKSRSEEMIKILSDMRINGCPPNRITWNTLLAMCGDKGKHKF 496

Query: 295 ANEFLREML-----PDKRIKNV---RYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDP 346
            N   REM      P K   N     Y   GS+ D  +           Y   +K    P
Sbjct: 497 VNHVFREMKNCGFEPGKDTFNTLISAYGRCGSELDAAK----------MYDEMMKAGFTP 546

Query: 347 -----KALANTL---DEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAY 398
                 AL N L    +W     S+L D +            + FK  ET++        
Sbjct: 547 CATTYNALLNALARRGDWKA-AESVLLDMRN-----------KGFKPNETSFSL------ 588

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP-FSTIRLIIDFYGISKKA 457
                        ML   A+ G+V  ++R I K   DG   P +  +R +I      +  
Sbjct: 589 -------------MLHCYAKGGNVRGLER-IGKDIYDGQIFPSWVLLRTLILANFKCRAV 634

Query: 458 DAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
               +AF +        + +K  M++++S+L    K      A  +L+ +  SG+ PD+ 
Sbjct: 635 RGMERAFEELMK-----NGYKPDMVIFNSMLSIFAKNNMYERAQKMLDLIRESGLQPDLV 689

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           T++ LM  +A +G+    +++   + ++G  PD   +  +I+ +C+
Sbjct: 690 TYNSLMNMYARRGECWKAEEILKGLIKSGESPDLVSYNTIIKGFCR 735



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 85/206 (41%), Gaps = 18/206 (8%)

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALK 462
           T D     +++    R G  E    +I  +   G+     T   +I+ YG + K   AL+
Sbjct: 370 TLDSVTYNELVAAYVRAGFYEEGATVIDTMTRKGVMPNAVTYTTVINAYGRAGKEVKALQ 429

Query: 463 AFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL 521
            F+   ++ C P      +  Y+S+L  L K  R  + I +L +M  +G  P+  T++ L
Sbjct: 430 LFNQMKKSGCVPN-----VCTYNSILALLGKKSRSEEMIKILSDMRINGCPPNRITWNTL 484

Query: 522 MYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLS------------NSNL 569
           +     +G  K V  +F  ++  G EP    F  LI AY +  S             +  
Sbjct: 485 LAMCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLISAYGRCGSELDAAKMYDEMMKAGF 544

Query: 570 MPDAATKELLKKSLWKEGRRKEAAAV 595
            P A T   L  +L + G  K A +V
Sbjct: 545 TPCATTYNALLNALARRGDWKAAESV 570



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 90/212 (42%), Gaps = 22/212 (10%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY---GISK 455
           + G+T        +L  LAR G  +  + ++  +R+ G +   ++  L++  Y   G  +
Sbjct: 541 KAGFTPCATTYNALLNALARRGDWKAAESVLLDMRNKGFKPNETSFSLMLHCYAKGGNVR 600

Query: 456 KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
             +   K  +D +        F   +L  +L+    KC+         EE++ +G  PD+
Sbjct: 601 GLERIGKDIYDGQI-------FPSWVLLRTLILANFKCRAVRGMERAFEELMKNGYKPDM 653

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY-----C-------KY 563
             F+ ++  FA     +  QK+  ++R++G++PD   +  L+  Y     C       K 
Sbjct: 654 VIFNSMLSIFAKNNMYERAQKMLDLIRESGLQPDLVTYNSLMNMYARRGECWKAEEILKG 713

Query: 564 LSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
           L  S   PD  +   + K   ++G  +EA  V
Sbjct: 714 LIKSGESPDLVSYNTIIKGFCRQGLMQEAIRV 745



 Score = 46.2 bits (108), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 26/171 (15%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN +M++YA+ G+ ++A E  + +I  G  P+  +Y  +I+     G +  A+ V S +
Sbjct: 690 TYNSLMNMYARRGECWKAEEILKGLIKSGESPDLVSYNTIIKGFCRQGLMQEAIRVMSEM 749

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
               I      Y   V G+ G   F E   +++ M      P                  
Sbjct: 750 TTRGICPCIFTYNTFVSGYAGRGMFAEVDEVISYMIQKNCKP------------------ 791

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSD-----DDEDENDDNNSGVRIAYGVQ 339
             NE   +++ D   K  R Y+D  D      + D++ DN+S  R+A  V+
Sbjct: 792 --NELTYKIIVDGYCK-ARKYQDAMDFIFGIKNIDDSFDNHSTQRLASHVR 839



 Score = 42.4 bits (98), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 92/234 (39%), Gaps = 20/234 (8%)

Query: 378 KVLRHFKSPETAWHFFCWV---AYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
           K L      E A   F WV   +       D  A+E M+ IL R     +  +L+ K+  
Sbjct: 166 KALDVLGKSERAILLFEWVVSNSVSGDVKLDSKAVELMIRILGRESKYSIALKLLDKIPI 225

Query: 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCK 494
           D   L       I+  Y  + K   A+  F   +  CG       ++ Y+ +L    K  
Sbjct: 226 DKYSLDVRACTTILHAYSRNGKYKQAIAMFERMKD-CGLSPS---LVTYNVMLDVYGKMG 281

Query: 495 RDFDAI-NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
           R +D I ++L+EM   G+  D  T S ++     +G     ++ F  ++ +G EP    +
Sbjct: 282 RSWDKILDLLDEMRNEGLQFDEFTCSTVISACGREGLINEAKEFFVELKSSGYEPGTVTY 341

Query: 554 KVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
             L+Q + K             + ++N   D+ T   L  +  + G  +E A V
Sbjct: 342 NALLQVFGKAGIYSEALNILKEMEDNNCTLDSVTYNELVAAYVRAGFYEEGATV 395



 Score = 38.9 bits (89), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 44/232 (18%), Positives = 90/232 (38%), Gaps = 23/232 (9%)

Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYG-ISKKADAA 460
           Y+ DV A   +L   +R+G  +    +  +++  G+     T  +++D YG + +  D  
Sbjct: 228 YSLDVRACTTILHAYSRNGKYKQAIAMFERMKDCGLSPSLVTYNVMLDVYGKMGRSWDKI 287

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDF---DAINVLEEMIFSGIVPDVQT 517
           L    + R       +F    + S+       C R+    +A     E+  SG  P   T
Sbjct: 288 LDLLDEMRNEGLQFDEFTCSTVISA-------CGREGLINEAKEFFVELKSSGYEPGTVT 340

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLS 565
           ++ L+  F   G       +   +  N    D+  +  L+ AY +             ++
Sbjct: 341 YNALLQVFGKAGIYSEALNILKEMEDNNCTLDSVTYNELVAAYVRAGFYEEGATVIDTMT 400

Query: 566 NSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAV 617
              +MP+A T   +  +  + G+  +A  +  + +K   VP++     I A+
Sbjct: 401 RKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSGCVPNVCTYNSILAL 452


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 95/438 (21%), Positives = 170/438 (38%), Gaps = 48/438 (10%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SY  V++ + K G + +A  T+ +++D    P+  TY+ +I  L     +D A+EV + +
Sbjct: 198 SYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTM 257

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
               +      Y  ++ G+   E+  EA   L +MR DG  P                + 
Sbjct: 258 VKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPD---------------VV 302

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIA-YGVQLKPWLDPKALANT 352
             N  +  +  + R    R   D       E D       IA Y   L+ +    AL   
Sbjct: 303 TYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPD-------IATYCTLLQGYATKGALVEM 355

Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
                  V + +     V+   L+C   +  K  E    F      Q G   +V     +
Sbjct: 356 HALLDLMVRNGIHPDHHVFNI-LICAYAKQEKVDEAMLVF--SKMRQHGLNPNVVTYGAV 412

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD--DRTL 470
           + IL + G V+       ++  +G+         +I    I  K D A +   +  DR +
Sbjct: 413 IGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGI 472

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
           C         + ++S++ +  K  R  ++  + + M+  G+ P+V T+S L+  + L G 
Sbjct: 473 CLNT------IFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGK 526

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKEL 578
                KL S +   G++PD   +  LI  YC            K + +S + P+  T  +
Sbjct: 527 MDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNI 586

Query: 579 LKKSLWKEGRRKEAAAVE 596
           + + L+    R+ AAA E
Sbjct: 587 ILQGLFHT--RRTAAAKE 602



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 4/122 (3%)

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           EL+L    E   R   L+T  +N ++  + K G+  E+ + F  ++  G  PN  TY+ +
Sbjct: 462 ELIL----EMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTL 517

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           I+     GK+D A ++ S++  + +K     Y  L+ G+  V R D+A +L  EM   G 
Sbjct: 518 IDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGV 577

Query: 274 FP 275
            P
Sbjct: 578 SP 579



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 87/201 (43%), Gaps = 1/201 (0%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + H   S+     A+  ++ ++S+     +  T ++L   L K+ R+ E + +   ++  
Sbjct: 272 ILHGYCSSEQPKEAIGFLKKMRSD-GVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKR 330

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
                   +  L+Q Y+T G L  + +  +   +         +NI++  YAK  K  EA
Sbjct: 331 GLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEA 390

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
           +  F ++   G  PN  TY  +I  L   G +D A+  F  +    +      Y  L+  
Sbjct: 391 MLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHS 450

Query: 252 FVGVERFDEAKSLLNEMRDDG 272
               +++D+A+ L+ EM D G
Sbjct: 451 LCIFDKWDKAEELILEMLDRG 471



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 104/524 (19%), Positives = 202/524 (38%), Gaps = 47/524 (8%)

Query: 64  DRLLDPFIVTH-----ALRSAPNADSALSIMEALKSN---PNFSHNQSTLHALATVLAKS 115
           DR + P +VT+     AL      D A+ ++  +  N   PN     S LH   +    S
Sbjct: 224 DRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCS----S 279

Query: 116 QRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
           ++  E    +  + S       V + +LM +   +G        ++   +R       +Y
Sbjct: 280 EQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATY 339

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
             ++  YA  G   E       ++  G  P+   + ++I       K+D A+ VFS +  
Sbjct: 340 CTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQ 399

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQG- 294
             +      Y  ++         D+A     +M D+G  P   +  +L  +  +      
Sbjct: 400 HGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSL--IHSLCIFDKW 457

Query: 295 --ANEFLREMLPDKRIKNVRYYED--GSDDDEDENDDNNSGVRIAYGVQLKP-------W 343
             A E + EML      N  ++     S   E    ++     +   + +KP        
Sbjct: 458 DKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTL 517

Query: 344 LDPKALANTLDEWSPEVVSLLA---DAKFVWTTRLV---CKVLRHFKSPETAWHFFCWVA 397
           +D   LA  +DE +  + S+ +       V    L+   C+V R     + A   F  + 
Sbjct: 518 IDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRM----DDALALFKEMV 573

Query: 398 YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK- 456
              G + ++     +L  L           L   +   G +L  ST  +I+  +G+ K  
Sbjct: 574 -SSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIIL--HGLCKNN 630

Query: 457 -ADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
             D AL+ F +   LC  ++  +L    ++ ++  L K  R+ +A ++   +  +G+VPD
Sbjct: 631 LTDEALRMFQN---LC--LTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPD 685

Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           V+T+S +  +   QG  + +  LF  + +NG   ++ M   +++
Sbjct: 686 VRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVR 729



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 14/124 (11%)

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFAL-QGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           A +   EM+   I PDV T+S ++      Q  +K ++ L +MV+ NGV P+   +  ++
Sbjct: 215 AYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVK-NGVMPNCMTYNSIL 273

Query: 558 QAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDV 605
             YC            K + +  + PD  T   L   L K GR  EA  + +   K    
Sbjct: 274 HGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLE 333

Query: 606 PSLA 609
           P +A
Sbjct: 334 PDIA 337



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 91/512 (17%), Positives = 195/512 (38%), Gaps = 72/512 (14%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T  ++   L K Q   +   ++  +  +  +   + + +++  Y +S   +  +    + 
Sbjct: 233 TYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKM 292

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
           R         +YN +M    K G++ EA + F  +   G  P+  TY  +++     G L
Sbjct: 293 RSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGAL 352

Query: 224 DSALEVFSALPLM---RIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR 280
              +E+ + L LM    I      + IL+  +   E+ DEA  + ++MR  G  P     
Sbjct: 353 ---VEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTY 409

Query: 281 VA-LERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQ 339
            A +  + + G +  A  +  +M+ +    N+  Y                         
Sbjct: 410 GAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVY------------------------- 444

Query: 340 LKPWLDPKALANTL---DEW--SPEVVSLLADAKFVWTTRLV-------CKVLRHFKSPE 387
                   +L ++L   D+W  + E++  + D      T          CK  R  +S E
Sbjct: 445 -------TSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIES-E 496

Query: 388 TAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLI 447
             +     +  +P    +V     ++      G ++   +L++ + S GM+    T   +
Sbjct: 497 KLFDLMVRIGVKP----NVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTL 552

Query: 448 IDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMI 507
           I+ Y    + D AL  F +   +   +S    ++ Y+ +L+ L   +R   A  +   + 
Sbjct: 553 INGYCRVSRMDDALALFKE--MVSSGVSPN--IITYNIILQGLFHTRRTAAAKELYVGIT 608

Query: 508 FSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY---- 563
            SG   ++ T++ +++            ++F  +    ++ +   F ++I A  K     
Sbjct: 609 KSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRND 668

Query: 564 --------LSNSNLMPDAATKELLKKSLWKEG 587
                   LS + L+PD  T  L+ ++L ++G
Sbjct: 669 EAKDLFAALSANGLVPDVRTYSLMAENLIEQG 700


>gi|255582955|ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528066|gb|EEF30142.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 521

 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 109/235 (46%), Gaps = 3/235 (1%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD-IS 129
           +V H  +S  + +SAL +M  +K +     N  T   L   L  + R  E   L  + +S
Sbjct: 205 LVKHHCKSG-DLESALEVMHEMKKSRRSYPNVITYSTLIDGLCGNGRLKEAIELFEEMVS 263

Query: 130 SSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF 189
             + L  ++ +  L++ +   G  +         R      +  +Y+++M+ + K G+  
Sbjct: 264 KDQILPDALTYSVLIKGFCHGGKADRARKIMEFMRSNGCDPNVFNYSVLMNGFCKEGRLE 323

Query: 190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV 249
           EA E F ++   G  P++  YT +I     +G++D A+E+   +  M+ K  +  + +L+
Sbjct: 324 EAKEVFDEMKSSGLKPDTVGYTTLINCFCGVGRIDEAMELLKEMTEMKCKADAVTFNVLL 383

Query: 250 EGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREML 303
           +G     RFDEA  +L  +  +G +  + + R+ L  + + G ++ +   L  ML
Sbjct: 384 KGLCREGRFDEALRMLENLAYEGVYLNKGSYRIVLNFLCQKGELEKSCALLGLML 438



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 85/199 (42%), Gaps = 17/199 (8%)

Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI-RLIIDFYGISKKADAALKAFHD 466
           A+   L IL     ++L  + +  +       P + I  +++  +  S   ++AL+  H+
Sbjct: 165 AISTCLNILVESKQIDLAQKCLLYVNEHLKVRPNTCIFNILVKHHCKSGDLESALEVMHE 224

Query: 467 DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSG-IVPDVQTFSGLMYHF 525
            +        +  ++ YS+L+  L    R  +AI + EEM+    I+PD  T+S L+  F
Sbjct: 225 MKK---SRRSYPNVITYSTLIDGLCGNGRLKEAIELFEEMVSKDQILPDALTYSVLIKGF 281

Query: 526 ALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDA 573
              G     +K+   +R NG +P+ + + VL+  +CK             + +S L PD 
Sbjct: 282 CHGGKADRARKIMEFMRSNGCDPNVFNYSVLMNGFCKEGRLEEAKEVFDEMKSSGLKPDT 341

Query: 574 ATKELLKKSLWKEGRRKEA 592
                L       GR  EA
Sbjct: 342 VGYTTLINCFCGVGRIDEA 360



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 92/207 (44%), Gaps = 25/207 (12%)

Query: 76  LRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDIS--SSKF 133
           ++   +   AL I   +     F+HN +T   L   LA++++ H +  L+  ++  + KF
Sbjct: 66  IKREKDPQHALEIFNMVGEQKGFNHNHATYSTLIHKLAQTKKFHAVDALLHQMTYETCKF 125

Query: 134 L-NVSVNFMNLMQWYSTSGDLELVLSTWNE----YRQRAKLLS-TESYNIVMSVYAKTGK 187
             N+   F+NLM+ +  S   E VL  +       R++  L + +   NI++       K
Sbjct: 126 HENI---FLNLMKHFYKSSLHERVLEMFYAIQPIVREKPSLKAISTCLNILVE-----SK 177

Query: 188 NFEAVETFRQVIDE--GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK-- 243
             +  +     ++E     PN+  + ++++H    G L+SALEV      M+  R S   
Sbjct: 178 QIDLAQKCLLYVNEHLKVRPNTCIFNILVKHHCKSGDLESALEVMHE---MKKSRRSYPN 234

Query: 244 --QYLILVEGFVGVERFDEAKSLLNEM 268
              Y  L++G  G  R  EA  L  EM
Sbjct: 235 VITYSTLIDGLCGNGRLKEAIELFEEM 261



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 122/308 (39%), Gaps = 55/308 (17%)

Query: 342 PWLDP----KA---LANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFC 394
           PW+ P    KA   + ++  E S  +V      KF+     +  +++  K P+ A   F 
Sbjct: 22  PWISPLQFSKAAPLVPDSPTETSSTLVETGRKCKFISHESAI-NLIKREKDPQHALEIFN 80

Query: 395 WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI---------- 444
            V  Q G+ H+      ++  LA+      VD L+ ++  +  +   +            
Sbjct: 81  MVGEQKGFNHNHATYSTLIHKLAQTKKFHAVDALLHQMTYETCKFHENIFLNLMKHFYKS 140

Query: 445 ----RLIIDFYGISK--KADAALKAFHDDRTLCGPISKFKL---MLLY----------SS 485
               R++  FY I    +   +LKA      +     +  L    LLY          + 
Sbjct: 141 SLHERVLEMFYAIQPIVREKPSLKAISTCLNILVESKQIDLAQKCLLYVNEHLKVRPNTC 200

Query: 486 LLRTLTK--CKR-DFD-AINVLEEMIFS-GIVPDVQTFSGLMYHFALQGDEKIVQKLF-S 539
           +   L K  CK  D + A+ V+ EM  S    P+V T+S L+      G  K   +LF  
Sbjct: 201 IFNILVKHHCKSGDLESALEVMHEMKKSRRSYPNVITYSTLIDGLCGNGRLKEAIELFEE 260

Query: 540 MVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEG 587
           MV ++ + PDA  + VLI+ +C            +++ ++   P+     +L     KEG
Sbjct: 261 MVSKDQILPDALTYSVLIKGFCHGGKADRARKIMEFMRSNGCDPNVFNYSVLMNGFCKEG 320

Query: 588 RRKEAAAV 595
           R +EA  V
Sbjct: 321 RLEEAKEV 328


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 95/438 (21%), Positives = 170/438 (38%), Gaps = 48/438 (10%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SY  V++ + K G + +A  T+ +++D    P+  TY+ +I  L     +D A+EV + +
Sbjct: 198 SYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTM 257

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
               +      Y  ++ G+   E+  EA   L +MR DG  P                + 
Sbjct: 258 VKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPD---------------VV 302

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIA-YGVQLKPWLDPKALANT 352
             N  +  +  + R    R   D       E D       IA Y   L+ +    AL   
Sbjct: 303 TYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPD-------IATYCTLLQGYATKGALVEM 355

Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
                  V + +     V+   L+C   +  K  E    F      Q G   +V     +
Sbjct: 356 HALLDLMVRNGIHPDHHVFNI-LICAYAKQEKVDEAMLVF--SKMRQHGLNPNVVTYGAV 412

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD--DRTL 470
           + IL + G V+       ++  +G+         +I    I  K D A +   +  DR +
Sbjct: 413 IGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGI 472

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
           C         + ++S++ +  K  R  ++  + + M+  G+ P+V T+S L+  + L G 
Sbjct: 473 CLNT------IFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGK 526

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKEL 578
                KL S +   G++PD   +  LI  YC            K + +S + P+  T  +
Sbjct: 527 MDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNI 586

Query: 579 LKKSLWKEGRRKEAAAVE 596
           + + L+    R+ AAA E
Sbjct: 587 ILQGLFHT--RRTAAAKE 602



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 4/122 (3%)

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           EL+L    E   R   L+T  +N ++  + K G+  E+ + F  ++  G  PN  TY+ +
Sbjct: 462 ELIL----EMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTL 517

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           I+     GK+D A ++ S++  + +K     Y  L+ G+  V R D+A +L  EM   G 
Sbjct: 518 IDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGV 577

Query: 274 FP 275
            P
Sbjct: 578 SP 579



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 87/201 (43%), Gaps = 1/201 (0%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + H   S+     A+  ++ ++S+     +  T ++L   L K+ R+ E + +   ++  
Sbjct: 272 ILHGYCSSEQPKEAIGFLKKMRSD-GVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKR 330

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
                   +  L+Q Y+T G L  + +  +   +         +NI++  YAK  K  EA
Sbjct: 331 GLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEA 390

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
           +  F ++   G  PN  TY  +I  L   G +D A+  F  +    +      Y  L+  
Sbjct: 391 MLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHS 450

Query: 252 FVGVERFDEAKSLLNEMRDDG 272
               +++D+A+ L+ EM D G
Sbjct: 451 LCIFDKWDKAEELILEMLDRG 471



 Score = 43.5 bits (101), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 14/140 (10%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL-QGDEKIVQKLFSMV 541
           Y++++    K      A +   EM+   I PDV T+S ++      Q  +K ++ L +MV
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMV 258

Query: 542 RQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRR 589
           + NGV P+   +  ++  YC            K + +  + PD  T   L   L K GR 
Sbjct: 259 K-NGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRS 317

Query: 590 KEAAAVEERCEKINDVPSLA 609
            EA  + +   K    P +A
Sbjct: 318 TEARKIFDSMTKRGLEPDIA 337



 Score = 43.1 bits (100), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 57/139 (41%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
            V +  L+  Y     ++  L+ + E        +  +YNI++     T +   A E + 
Sbjct: 546 CVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYV 605

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
            +   G      TY +++  L      D AL +F  L L  ++  ++ + I++   + V 
Sbjct: 606 GITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVG 665

Query: 257 RFDEAKSLLNEMRDDGKFP 275
           R DEAK L      +G  P
Sbjct: 666 RNDEAKDLFVAFSSNGLVP 684



 Score = 42.0 bits (97), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 42/215 (19%), Positives = 88/215 (40%), Gaps = 7/215 (3%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T  ++   L K Q   +   ++  +  +  +   + + +++  Y +S   +  +    + 
Sbjct: 233 TYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKM 292

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
           R         +YN +M    K G++ EA + F  +   G  P+  TY  +++     G L
Sbjct: 293 RSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGAL 352

Query: 224 DSALEVFSALPLM---RIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR 280
              +E+ + L LM    I      + IL+  +   E+ DEA  + ++MR  G  P     
Sbjct: 353 ---VEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTY 409

Query: 281 VA-LERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
            A +  + + G +  A  +  +M+ +    N+  Y
Sbjct: 410 GAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVY 444



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 46/103 (44%)

Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           L   +YNI++    K     EA+  F+ +        +RT+ +MI  L+ +G+ D A ++
Sbjct: 614 LELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDL 673

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           F A     +      Y ++ E  +G    +E   L   M D+G
Sbjct: 674 FVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFFSMEDNG 716


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 98/225 (43%), Gaps = 7/225 (3%)

Query: 48  LAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHA 107
           LAV   +  +L  ++   L+D + + + +    NA      M  +   P+  H  S +  
Sbjct: 291 LAVMVKACVNLDVVVYSTLMDGYCLVNEVN---NAKRVFYTMTQMGVTPDV-HCYSIM-- 344

Query: 108 LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA 167
               L K +R  E   L  +I     +  +V + +L+     SG +  V   ++E   R 
Sbjct: 345 -INGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRG 403

Query: 168 KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227
           +     +YN ++    K G    A+  F ++ D+   PN  T+T++++ L  +G+L +AL
Sbjct: 404 QPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNAL 463

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           E F  L         + Y +++ G       DEA +L + M D+G
Sbjct: 464 EFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRMEDNG 508



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 95/454 (20%), Positives = 188/454 (41%), Gaps = 44/454 (9%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           ++    LM+     G ++  L   ++   +   LS  SY I+++   K G+   A+   R
Sbjct: 128 TITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAIRLLR 187

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           ++      PN   Y+++I+ L     +D A ++++ +    I      Y ILV GF  V 
Sbjct: 188 RIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVG 247

Query: 257 RFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
           + + A  LLNEM  +   P      + ++ + + G ++ A   L  M+      +V  Y 
Sbjct: 248 QLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYS 307

Query: 316 DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEV--VSLLADAKFVWTT 373
              D     N+ NN+  R+ Y +             T    +P+V   S++ +       
Sbjct: 308 TLMDGYCLVNEVNNAK-RVFYTM-------------TQMGVTPDVHCYSIMING------ 347

Query: 374 RLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
             +CK+    K  + A + F  + +Q     D      ++  L + G +  V  L  ++ 
Sbjct: 348 --LCKI----KRVDEALNLFEEI-HQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEML 400

Query: 434 SDGMRLPFSTIRLIIDFYGISKKADAALKAFH--DDRTLCGPISKFKLMLLYSSLLRTLT 491
             G      T   +ID    +   D A+  F+   D+ +   +  F +      LL  L 
Sbjct: 401 DRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTI------LLDGLC 454

Query: 492 KCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG--DEKIVQKLFSMVRQNGVEPD 549
           K  R  +A+   ++++  G   +V+T++ ++     +G  DE +   L S +  NG   D
Sbjct: 455 KVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALA--LQSRMEDNGCISD 512

Query: 550 AYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSL 583
           A  F+++I+A+  +  + N   +   +E++ + L
Sbjct: 513 AVTFEIMIRAF--FDKDENDKAEKLVREMIARGL 544



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 83/200 (41%), Gaps = 16/200 (8%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           D+Y    ++  L + G V+  + ++A +    + L       ++D Y +  + + A + F
Sbjct: 267 DIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVF 326

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
           +   T  G          YS ++  L K KR  +A+N+ EE+    +VPD  T++ L+  
Sbjct: 327 YT-MTQMGVTPDVHC---YSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDC 382

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPD 572
               G    V  LF  +   G  PD   +  LI A CK             + +  + P+
Sbjct: 383 LCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPN 442

Query: 573 AATKELLKKSLWKEGRRKEA 592
             T  +L   L K GR K A
Sbjct: 443 VYTFTILLDGLCKVGRLKNA 462



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 16/168 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD-- 458
           GY  +   L  ++  L   G V+   R   K+ + G RL   +  ++I+  G+ K  +  
Sbjct: 123 GYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILIN--GVCKIGETR 180

Query: 459 AALKAFHDDRTLCGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
           AA++           I ++ +   +++YS ++  L K     +A ++  EM+  GI PDV
Sbjct: 181 AAIRLLRR-------IERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDV 233

Query: 516 QTFSGLMYHFALQGD-EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            T+S L+  F + G   + +  L  MV +N + PD Y + +L+ A CK
Sbjct: 234 VTYSILVSGFCIVGQLNRAIDLLNEMVLEN-INPDIYTYTILVDALCK 280



 Score = 42.7 bits (99), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 12/120 (10%)

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           AI++L EM+   I PD+ T++ L+     +G  K  + + +++ +  V  D  ++  L+ 
Sbjct: 252 AIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMD 311

Query: 559 AYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
            YC              ++   + PD     ++   L K  R  EA  + E   + N VP
Sbjct: 312 GYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVP 371


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 102/244 (41%), Gaps = 7/244 (2%)

Query: 65  RLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNH 119
           R +DP IVT+             D A  I   + S      +  T + L     K++R  
Sbjct: 355 RSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLP-DVVTYNTLIKGFCKAKRVE 413

Query: 120 ELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM 179
           E   L  ++S    +  +V +  L+Q    +GD ++    + +           +Y+I++
Sbjct: 414 EGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILL 473

Query: 180 SVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIK 239
               K GK  +A+  F  +      PN  TY +MIE +   GK++   ++F +L L  +K
Sbjct: 474 DGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVK 533

Query: 240 RTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQ-EMGFIQGANEF 298
                Y  ++ GF      +EA +L  EM++DG  P       L R +   G    + E 
Sbjct: 534 PNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAEL 593

Query: 299 LREM 302
           ++EM
Sbjct: 594 IKEM 597



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 91/495 (18%), Positives = 192/495 (38%), Gaps = 30/495 (6%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D  +S+ E ++ N    HN  T   L     +  +      ++G +    +    V   +
Sbjct: 98  DVVISLGEQMQ-NLGIPHNHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSS 156

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  Y     +   ++  ++  +      T ++N ++       K  EAV    +++  G
Sbjct: 157 LLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARG 216

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  TY  ++  L   G +D AL +   +   +I+     Y  +++G    +  D+A 
Sbjct: 217 CQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAF 276

Query: 263 SLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDD 321
            L N+M   G  P      +L   +   G    A+  L +M+  K   NV  +    D  
Sbjct: 277 DLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAF 336

Query: 322 EDENDDNNSGVRIAYGVQLKPWLDPK-----------ALANTLDEWSPEVVSLLADAKF- 369
             E     +     +   ++  +DP             + + LDE + ++ +L+      
Sbjct: 337 AKEGKLIEA--EKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDE-AQQIFTLMVSKDCL 393

Query: 370 --VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDR 427
             V T   + K     K  E     F  ++ Q G   +      ++  L + G  ++  +
Sbjct: 394 PDVVTYNTLIKGFCKAKRVEEGMELFREMS-QRGLVGNTVTYNTLIQGLFQAGDCDMAQK 452

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL---MLLYS 484
           +  K+ SDG+     T  +++D      K + AL  F         + K K+   +  Y+
Sbjct: 453 IFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFE-------YLQKSKMEPNIYTYN 505

Query: 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544
            ++  + K  +  D  ++   +   G+ P+V  ++ ++  F  +G ++    LF  ++++
Sbjct: 506 IMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKED 565

Query: 545 GVEPDAYMFKVLIQA 559
           G  PD+  +  LI+A
Sbjct: 566 GTLPDSGCYNTLIRA 580



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 83/204 (40%), Gaps = 16/204 (7%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D++    ++  L + G ++L   L+ K+    +         IID     K  D A
Sbjct: 216 GCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDA 275

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
              F+   T       F     Y+SL+  L    R  DA  +L +MI   I P+V TF+ 
Sbjct: 276 FDLFNKMETKGIKPDVFT----YNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNS 331

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSN 568
           L+  FA +G     +KLF  + Q  ++P+   +  LI  +C +            + + +
Sbjct: 332 LIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKD 391

Query: 569 LMPDAATKELLKKSLWKEGRRKEA 592
            +PD  T   L K   K  R +E 
Sbjct: 392 CLPDVVTYNTLIKGFCKAKRVEEG 415



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 83/485 (17%), Positives = 191/485 (39%), Gaps = 48/485 (9%)

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L G++  S+     + F  L+   +     ++V+S   + +      +  +Y+I+++ + 
Sbjct: 68  LFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILLNCFC 127

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           +  +   A+    +++  G  P+  T + ++    +  ++  A+ +   +  M  K  + 
Sbjct: 128 RRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTV 187

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREM 302
            +  L+ G     +  EA +L++ M   G  P        +  + + G I  A   L++M
Sbjct: 188 TFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM 247

Query: 303 LPDKRIKNVRYYE---DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPE 359
              K   NV  Y    DG    +  +D             L   ++ K +   +  ++  
Sbjct: 248 EKGKIEANVVIYNTIIDGLCKYKHMDD----------AFDLFNKMETKGIKPDVFTYNSL 297

Query: 360 VVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH 419
           +  L    ++   +RL+  ++    +P                  +V     ++   A+ 
Sbjct: 298 ISCLCNYGRWSDASRLLSDMIERKINP------------------NVVTFNSLIDAFAKE 339

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL 479
           G +   ++L  ++    +     T   +I+ + +  + D A + F    TL         
Sbjct: 340 GKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIF----TLMVSKDCLPD 395

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y++L++   K KR  + + +  EM   G+V +  T++ L+      GD  + QK+F 
Sbjct: 396 VVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFK 455

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEG 587
            +  +GV PD   + +L+   CK            YL  S + P+  T  ++ + + K G
Sbjct: 456 KMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAG 515

Query: 588 RRKEA 592
           + ++ 
Sbjct: 516 KVEDG 520



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 40/207 (19%), Positives = 82/207 (39%), Gaps = 20/207 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G  H+ Y    +L    R   + L   ++ K+   G      T+  +++ Y   K+   A
Sbjct: 111 GIPHNHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEA 170

Query: 461 LKAFHDDRTLCG--PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
           + A  D     G  P +     + +++L+  L    +  +A+ +++ M+  G  PD+ T+
Sbjct: 171 V-ALVDQMVEMGYKPDT-----VTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTY 224

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSN 566
             ++     +GD  +   L   + +  +E +  ++  +I   CKY            +  
Sbjct: 225 GTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMET 284

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEAA 593
             + PD  T   L   L   GR  +A+
Sbjct: 285 KGIKPDVFTYNSLISCLCNYGRWSDAS 311


>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 730

 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 89/431 (20%), Positives = 175/431 (40%), Gaps = 44/431 (10%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF-EAVETFRQV 198
           + +L+  YS +G +E  +  +N+ R      ++ ++N ++ ++ K  KNF E +  F  +
Sbjct: 296 YTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKN-KNFSEMMVIFEDM 354

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
              G  P+  T+  ++      G     L+VF  +     +     + IL+E +      
Sbjct: 355 QACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSS 414

Query: 259 DEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGS 318
           D+A S+ + M   G  P  A                 N  L  +  + R ++     D  
Sbjct: 415 DQALSIYDGMLQAGCTPDLAT---------------FNTLLAALAREGRWEHAELILDEL 459

Query: 319 DDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCK 378
           +    + +D      IAY   L  + +   L     E   E+V  L    +V  T+++ K
Sbjct: 460 NRSSYKPND------IAYASMLHAYANGGEL-----EKLKEMVDTL-HTIYVPFTKILLK 507

Query: 379 --VLRHFKSP--ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
             VL + K    + A   F  + +  GY  D      M+++  + G ++      A LRS
Sbjct: 508 TFVLVYSKCSLVDEAEDAFLAMRHH-GYLSDTSTFNAMISMYGKKGMMDKATDTFALLRS 566

Query: 435 DGMRLPFSTIRLIIDFY---GISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLT 491
            G+     T   ++  Y   G+ +K +A L+        C    +   ++ Y++++ + +
Sbjct: 567 TGLEPDVVTYNCLMGMYGREGMYRKCEATLRE-------CMAAGQTPDLVSYNTVIFSYS 619

Query: 492 KCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAY 551
           K  +   A  +  EM+ +GI PD  T++  +  +   G       +   + + G +PD  
Sbjct: 620 KHGQLSSATRIFHEMVSNGIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHKTGCKPDEV 679

Query: 552 MFKVLIQAYCK 562
            ++ L+ AYCK
Sbjct: 680 TYRTLVDAYCK 690



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 91/205 (44%), Gaps = 18/205 (8%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   ++    ++L+   R G       +   + S G+     T   ++  Y  + K + A
Sbjct: 253 GCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQA 312

Query: 461 LKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           ++ ++  RT  C P S       +++L+    K K   + + + E+M   G+ PD+ T++
Sbjct: 313 MEIYNQMRTSNCTPNS-----FTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWN 367

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSN------------S 567
            L+  F   G    V K+F  +++ G EPD   F +LI+AY +  S+            +
Sbjct: 368 SLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQA 427

Query: 568 NLMPDAATKELLKKSLWKEGRRKEA 592
              PD AT   L  +L +EGR + A
Sbjct: 428 GCTPDLATFNTLLAALAREGRWEHA 452



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 108/559 (19%), Positives = 202/559 (36%), Gaps = 82/559 (14%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           ++ L + E +K+      ++ T +   T  A      E   L   + SS      V +  
Sbjct: 170 ENILELFEEMKAQ-GIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNA 228

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  Y  +G      +   E      L +  +YN ++S + + G    A E    ++ +G
Sbjct: 229 LLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKG 288

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  TYT ++      GK++ A+E+++ +        S  +  L+      + F E  
Sbjct: 289 IEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMM 348

Query: 263 SLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREML------------PDKRIKN 310
            +  +M+  G  P      +L     +G   G N    E+L            PDK   N
Sbjct: 349 VIFEDMQACGVEPDIVTWNSL-----LGAF-GKNGMYSEVLKVFRGMKKAGFEPDKATFN 402

Query: 311 V---RYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPK-ALANTLDEWSPEVVSLLAD 366
           +    Y   GS D               Y   L+    P  A  NTL      + +L  +
Sbjct: 403 ILIEAYGRCGSSDQ----------ALSIYDGMLQAGCTPDLATFNTL------LAALARE 446

Query: 367 AKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPG-----------YTHDVYA------L 409
            ++     ++ ++ R    P    +     AY  G             H +Y       L
Sbjct: 447 GRWEHAELILDELNRSSYKPNDIAYASMLHAYANGGELEKLKEMVDTLHTIYVPFTKILL 506

Query: 410 EKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR- 468
           +  + + ++   V+  +     +R  G     ST   +I  YG     D A   F   R 
Sbjct: 507 KTFVLVYSKCSLVDEAEDAFLAMRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRS 566

Query: 469 TLCGP--ISKFKLMLLYS--SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
           T   P  ++   LM +Y    + R   KC+        L E + +G  PD+ +++ +++ 
Sbjct: 567 TGLEPDVVTYNCLMGMYGREGMYR---KCEA------TLRECMAAGQTPDLVSYNTVIFS 617

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY------------CKYLSNSNLMPD 572
           ++  G      ++F  +  NG++PD++ +   +  Y             K++  +   PD
Sbjct: 618 YSKHGQLSSATRIFHEMVSNGIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHKTGCKPD 677

Query: 573 AATKELLKKSLWKEGRRKE 591
             T   L  +  K G+ +E
Sbjct: 678 EVTYRTLVDAYCKIGKFEE 696



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 90/224 (40%), Gaps = 4/224 (1%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           LL  F++ ++  S    D A     A++ +   S + ST +A+ ++  K     +     
Sbjct: 505 LLKTFVLVYSKCSL--VDEAEDAFLAMRHHGYLS-DTSTFNAMISMYGKKGMMDKATDTF 561

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
             + S+      V +  LM  Y   G      +T  E     +     SYN V+  Y+K 
Sbjct: 562 ALLRSTGLEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKH 621

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
           G+   A   F +++  G  P+S TY   +   VN G    AL V   +     K     Y
Sbjct: 622 GQLSSATRIFHEMVSNGIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHKTGCKPDEVTY 681

Query: 246 LILVEGFVGVERFDEAKSLLNEMR-DDGKFPGRAMRVALERMQE 288
             LV+ +  + +F+E + +L  ++  D  F   A R    R+ +
Sbjct: 682 RTLVDAYCKIGKFEEVERILKFIKSSDPNFSKAAYRRIAARVDD 725



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 100/262 (38%), Gaps = 55/262 (20%)

Query: 389 AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII 448
           A   F W+     +  D   +  ML IL R   +  V RL   LR +G  L         
Sbjct: 65  ALEVFNWMRQSVNFRPDGVTIAVMLRILGRESQLTTVSRLFKSLREEGYPL--------- 115

Query: 449 DFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF 508
           D Y                               Y+SL+  L++ ++  +A+   E+M  
Sbjct: 116 DVYA------------------------------YTSLISALSRNRKFKEALGFFEQMKE 145

Query: 509 SGIVPDVQTFSGLMYHFALQGD--EKIVQKLFSMVRQNGVEPDAYMFKVLIQA-----YC 561
           +G  P + T++ ++  +  +G   E I++ LF  ++  G++PD Y +   I A      C
Sbjct: 146 AGPQPSLVTYNVIIDLYGKKGRSWENILE-LFEEMKAQGIQPDEYTYNTAITACASGSLC 204

Query: 562 K-------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHI 614
           +        + +SN  PD  T   L     K G   EAA V +  E    +P++     +
Sbjct: 205 EEATELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNEL 264

Query: 615 W-AVSSADLTRVHSIYRNSITS 635
             A   A L    +  ++S+ S
Sbjct: 265 LSAFGRAGLCNAAAEMKDSMVS 286



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 113/593 (19%), Positives = 210/593 (35%), Gaps = 76/593 (12%)

Query: 80  PNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
           PN +   S++    S PN S ++  L  +  +  + Q N  L+       S  F    V 
Sbjct: 28  PNDECVSSVLTT--SEPNLSSSE-LLSIMKGLGREGQWNKALEVFNWMRQSVNFRPDGVT 84

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
              +++       L  V   +   R+    L   +Y  ++S  ++  K  EA+  F Q+ 
Sbjct: 85  IAVMLRILGRESQLTTVSRLFKSLREEGYPLDVYAYTSLISALSRNRKFKEALGFFEQMK 144

Query: 200 DEGAIPNSRTYTVMIEHLVNLGK-LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
           + G  P+  TY V+I+     G+  ++ LE+F  +    I+     Y   +         
Sbjct: 145 EAGPQPSLVTYNVIIDLYGKKGRSWENILELFEEMKAQGIQPDEYTYNTAITACASGSLC 204

Query: 259 DEAKSLLNEMRDDGKFPGRAMRVA-LERMQEMGFIQGANEFLREMLPDKRIKNVRYYED- 316
           +EA  L  +M+     P R    A L+   + G+   A   L+EM     + N+  Y + 
Sbjct: 205 EEATELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNEL 264

Query: 317 -------GSDDDEDENDDN--NSGVR---IAYGVQLKPWLDPKALANTLDEWSPEVVSLL 364
                  G  +   E  D+  + G+      Y   L  +     +   ++ ++    S  
Sbjct: 265 LSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNC 324

Query: 365 ADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQP-GYTHDVYALEKMLTILARHGHVE 423
               F +       +  H K+   +     +   Q  G   D+     +L    ++G   
Sbjct: 325 TPNSFTFNAL----IGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYS 380

Query: 424 LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDD-RTLCGPISKFKLMLL 482
            V ++   ++  G     +T  ++I+ YG    +D AL  +    +  C P      +  
Sbjct: 381 EVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPD-----LAT 435

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD------------ 530
           +++LL  L +  R   A  +L+E+  S   P+   ++ +++ +A  G+            
Sbjct: 436 FNTLLAALAREGRWEHAELILDELNRSSYKPNDIAYASMLHAYANGGELEKLKEMVDTLH 495

Query: 531 ------EKIVQKLFSMV-----------------RQNGVEPDAYMFKVLIQAYCK----- 562
                  KI+ K F +V                 R +G   D   F  +I  Y K     
Sbjct: 496 TIYVPFTKILLKTFVLVYSKCSLVDEAEDAFLAMRHHGYLSDTSTFNAMISMYGKKGMMD 555

Query: 563 -------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
                   L ++ L PD  T   L     +EG  ++  A    C      P L
Sbjct: 556 KATDTFALLRSTGLEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDL 608


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 106/487 (21%), Positives = 184/487 (37%), Gaps = 88/487 (18%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK-------LDSA 226
           SYN V+S  A   K  EA + F  +ID G  P+   +T +I      G+       L+ A
Sbjct: 9   SYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKLLNQA 68

Query: 227 LEVF--------------------------SALPLMRIKRTSKQYLILVEGFVGVERFDE 260
           L+ F                          +  P   +   S  Y  +++G    +R DE
Sbjct: 69  LKRFRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVIS--YTTVIKGLADSKRIDE 126

Query: 261 AKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDD 320
           A  L  E++  G  P      A+        I G       +L   RI      EDG  +
Sbjct: 127 ACELFEELKTAGCSPNVVAYTAV--------IDG-------LLKAGRI------EDGLKN 165

Query: 321 DEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVL 380
            E+ +  +    R  Y V +      + L +    +   V          +TT L+    
Sbjct: 166 FEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTT-LIDGFS 224

Query: 381 RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVEL-----VDRLIAKLRSD 435
           +  K  E        +   P  T   Y      +I+  HG  +L        +IA++R  
Sbjct: 225 KASKMDEARKLLDVMLTKGPEPTAVTYG-----SIV--HGFCKLDMINEAKEVIAQMRER 277

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCK 494
           G          ++ +Y    +A+ A +   +     C P      ++LY+SL+  L    
Sbjct: 278 GCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPD-----VILYTSLIDLLFSTG 332

Query: 495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK 554
           R  +A +V + MI  G  PD  T+  ++ +F+  G+ +   ++  ++ ++GV PD + + 
Sbjct: 333 RVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYN 392

Query: 555 VLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAV-EERCEK 601
            L+  Y K             +  S + P+A T  +L   L+K+G+   A ++ +E  EK
Sbjct: 393 SLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEK 452

Query: 602 INDVPSL 608
               P+L
Sbjct: 453 EEVPPTL 459



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 80/165 (48%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           LA S+R  E   L  ++ ++      V +  ++     +G +E  L  + E    + + +
Sbjct: 118 LADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPT 177

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
             +Y +V+    K     +A + F Q++ +G +P++ TYT +I+      K+D A ++  
Sbjct: 178 RTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLD 237

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
            +     + T+  Y  +V GF  ++  +EAK ++ +MR+ G  PG
Sbjct: 238 VMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPG 282



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 1/150 (0%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST-ESYNIVMSVYAKTGKNFEAVETF 195
           +V F  LM      G  +   S + E  ++ ++  T  SY I++    K G+  EA   F
Sbjct: 423 AVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQF 482

Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
           +++ID G IP   TYT +I  L   G++  A ++   +  + +    + Y  L+ G +  
Sbjct: 483 QEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDS 542

Query: 256 ERFDEAKSLLNEMRDDGKFPGRAMRVALER 285
              D A  +  EM   G  P       L R
Sbjct: 543 SMVDTAWDVFQEMMKRGCAPNEVTYKVLRR 572



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 63/136 (46%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           F +L+ +Y + G  E       E   R        Y  ++ +   TG+  EA   F  +I
Sbjct: 286 FTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMI 345

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           ++G  P++ TY  +I++   +G +++A E+   +    +      Y  L++G+V +ER D
Sbjct: 346 EKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVD 405

Query: 260 EAKSLLNEMRDDGKFP 275
           +A  + + M   G  P
Sbjct: 406 QAFGVYDRMVASGIKP 421



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 68/157 (43%), Gaps = 7/157 (4%)

Query: 126 GDISSSKFLNVS-------VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV 178
           GD+ +  F  V+       +++  +++  + S  ++     + E +      +  +Y  V
Sbjct: 90  GDLDTGYFRAVTPKASLDVISYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAV 149

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI 238
           +    K G+  + ++ F ++     +P   TYTV+I+ L     L  A +VF  +     
Sbjct: 150 IDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGC 209

Query: 239 KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              +  Y  L++GF    + DEA+ LL+ M   G  P
Sbjct: 210 VPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEP 246



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 3/136 (2%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           + +++  Y  +GDL+     +     +A L    SY  V+   A + +  EA E F ++ 
Sbjct: 79  YTSVIHGYCKAGDLDT--GYFRAVTPKASL-DVISYTTVIKGLADSKRIDEACELFEELK 135

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
             G  PN   YT +I+ L+  G+++  L+ F  +       T   Y ++++G    +   
Sbjct: 136 TAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLP 195

Query: 260 EAKSLLNEMRDDGKFP 275
           +A  +  +M   G  P
Sbjct: 196 DACKVFEQMVQKGCVP 211



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 12/130 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y+ L+  L K  R  +A    +EMI  GI+P+  T++ L+Y  A  G     +KL  
Sbjct: 459 LVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVE 518

Query: 540 MVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEG 587
            + + GV PD   +  LI                + +      P+  T ++L++     G
Sbjct: 519 DMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAG 578

Query: 588 RRKEAAAVEE 597
           R  +  AV++
Sbjct: 579 RALDLEAVKQ 588


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 111/522 (21%), Positives = 201/522 (38%), Gaps = 57/522 (10%)

Query: 108 LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA 167
           L    A   R  E + L+  +S S        +  ++   S +G +E   +   E + R 
Sbjct: 479 LIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRG 538

Query: 168 KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227
                 ++   +  Y+KTGK  EA + F +++D G +PN+  YTV+I      G L  AL
Sbjct: 539 LKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEAL 598

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERM 286
            +F  L  + +    +     + G +   R  EA  + +E+++ G  P      +L    
Sbjct: 599 SIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGF 658

Query: 287 QEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDP 346
            + G ++ A E   EM       N+  Y    D      D       I    +L   +  
Sbjct: 659 CKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGD-------IQRARKLFDGMPE 711

Query: 347 KALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQP--GYTH 404
           K L        P+ V+        ++T     ++  +   E     F      P  G   
Sbjct: 712 KGL-------EPDSVT--------YST-----MIDGYCKSENVAEAFSLFHEMPSKGVQP 751

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGM--RLPFSTIRLIIDFYGISKKADAALK 462
             +    ++    + G +E    L  ++   G    L F+T   +ID Y  S K   A +
Sbjct: 752 HSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNT---LIDGYCKSCKIQEASQ 808

Query: 463 AFHDDRTLCGPISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
            F +       I+K ++M   + Y++++    K  +  +A  + +EM    ++ D  T++
Sbjct: 809 LFQE------MIAK-QIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYT 861

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNS 567
            LMY +   G    V  LF  +   GV+PD   + ++I A+CK             +   
Sbjct: 862 SLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGK 921

Query: 568 NLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA 609
            ++      +LL  +L K     EA+ + +   ++   PSLA
Sbjct: 922 GMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLA 963



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 99/526 (18%), Positives = 194/526 (36%), Gaps = 84/526 (15%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           Y++V+    + G   EAVE  R + ++G +PN+ TYT++   L    +++ A   F  + 
Sbjct: 266 YSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQ 325

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM--RVALERMQEMGFI 292
              +K        L++GF+     DE   + + M   G  P   +   V +  + + G +
Sbjct: 326 KTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCG-IPINLITYNVLIHGLCKFGKM 384

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
           + A E L+ M+      N R +       E    ++N G      ++L   ++ + L  +
Sbjct: 385 EKAAEILKGMVTLGCKPNSRTF---CLLIEGYCREHNMG----RALELLDEMEKRNLVPS 437

Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQP------------ 400
              +   +  L          +L+ K+      P    +    +AY              
Sbjct: 438 AVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLD 497

Query: 401 -----GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455
                G   D++    +++ L++ G +E     + +++  G++    T    I  Y  + 
Sbjct: 498 GMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTG 557

Query: 456 KADAALKAFHD--DRTLC-----------GPISKFKLM------------------LLYS 484
           K   A K F +  D  L            G      LM                     S
Sbjct: 558 KMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCS 617

Query: 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544
           + +  L K  R  +A+ V  E+   G+VPDV T+S L+  F  QG+ +   +L   +   
Sbjct: 618 AFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLK 677

Query: 545 GVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           G+ P+ +++  L+   CK             +    L PD+ T   +     K     EA
Sbjct: 678 GIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEA 737

Query: 593 AAVEERCEKINDVPSLALRGHIW--------AVSSADLTRVHSIYR 630
            ++       +++PS  ++ H +             D+ +  +++R
Sbjct: 738 FSL------FHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFR 777



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 55/126 (43%)

Query: 150 SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRT 209
            G +EL    +N            +Y  ++    KTG    A     ++ ++G  PN   
Sbjct: 206 CGMMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFI 265

Query: 210 YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
           Y+++IE +  +G +D A+E+  ++    +   +  Y I+  G    +R +EAK    EM+
Sbjct: 266 YSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQ 325

Query: 270 DDGKFP 275
             G  P
Sbjct: 326 KTGLKP 331



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 40/205 (19%), Positives = 83/205 (40%), Gaps = 1/205 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           +V   +    + D A+ +  ++        N  T   +   L +++R +E K    ++  
Sbjct: 268 LVIEGMCQVGDIDEAVELKRSM-GEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQK 326

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           +           L+  +   GD++ VL   +        ++  +YN+++    K GK  +
Sbjct: 327 TGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEK 386

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A E  + ++  G  PNSRT+ ++IE       +  ALE+   +    +  ++  Y  ++ 
Sbjct: 387 AAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMIN 446

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP 275
           G    +    A  LL +M   G  P
Sbjct: 447 GLCHCKDLSLANKLLEKMTFSGLKP 471



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 93/228 (40%), Gaps = 7/228 (3%)

Query: 79  APNADSALSI---MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLN 135
           A N   ALSI   + AL   P+     + +H L     K+ R  E   +  ++     + 
Sbjct: 591 AGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLL----KNGRVQEALKVFSELKEKGLVP 646

Query: 136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF 195
               + +L+  +   G++E      +E   +    +   YN ++    K+G    A + F
Sbjct: 647 DVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLF 706

Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
             + ++G  P+S TY+ MI+       +  A  +F  +P   ++  S  Y  LV G    
Sbjct: 707 DGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKE 766

Query: 256 ERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREML 303
              ++A +L  EM   G     +    ++   +   IQ A++  +EM+
Sbjct: 767 GDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMI 814



 Score = 43.1 bits (100), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 88/215 (40%), Gaps = 16/215 (7%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           DVY    ++  L + G +    R++ ++   G+        L+I+  G+ +  D   +A 
Sbjct: 227 DVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIE--GMCQVGDID-EAV 283

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
              R++ G          Y+ +   L + KR  +A    EEM  +G+ PD    S L+  
Sbjct: 284 ELKRSM-GEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDG 342

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPD 572
           F  +GD   V ++  ++   G+  +   + VLI   CK+            +      P+
Sbjct: 343 FMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPN 402

Query: 573 AATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
           + T  LL +   +E     A  + +  EK N VPS
Sbjct: 403 SRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPS 437


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 117/256 (45%), Gaps = 26/256 (10%)

Query: 351 NTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
           +T   + P+VVS        + T ++  +LR  +  +TA+H F  +  Q G + DV    
Sbjct: 193 DTRGGYPPDVVS--------YNT-VINGLLREGRQLDTAYHLFDQMLDQ-GLSPDVVTYN 242

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470
            +++ L++   ++    ++ ++  +G      T   ++  Y  S K + A+  F   + +
Sbjct: 243 SIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVF---KRM 299

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
           C    +  +   Y++L+  L K  R  +A  + + M+  G  P+  T+  L++ +A +G 
Sbjct: 300 CRDGVEPDV-FTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGS 358

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKEL 578
              +  L  M+ +NG++PD Y+F +LI  Y K+            +    L PD  T  +
Sbjct: 359 LVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGI 418

Query: 579 LKKSLWKEGRRKEAAA 594
           +  +L   G+  +A A
Sbjct: 419 VMDALCMVGKVDDAMA 434



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 78/172 (45%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T + L   L K+ R+ E + +   +        S  +  L+  Y+T G L  +    +  
Sbjct: 310 TYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMM 369

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
            +         +NI++  Y K GK  +A+  F ++  +G  P++ TY ++++ L  +GK+
Sbjct: 370 VRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKV 429

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           D A+  F  L    +   +  +  L+ G    +++D+A+ L  EM   G  P
Sbjct: 430 DDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICP 481



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 51/244 (20%), Positives = 93/244 (38%), Gaps = 42/244 (17%)

Query: 96  PNFSHNQSTLHALATVLAKSQRNHELKTLI-GDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
           PN +   + LH  AT  +  + +H L  ++   I    ++     F  L+  Y+  G ++
Sbjct: 341 PNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYI-----FNILIGTYTKHGKVD 395

Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG------------ 202
             +  +++ R++     T +Y IVM      GK  +A+  F ++I EG            
Sbjct: 396 DAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLI 455

Query: 203 -----------------------AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIK 239
                                    PN+  +  ++ HL   G +  A  +F  +  + ++
Sbjct: 456 HGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQ 515

Query: 240 RTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEF 298
           R    Y  L++G+    + DEA  LL  M  DG  P        +    + G I+ A   
Sbjct: 516 RDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSL 575

Query: 299 LREM 302
            R+M
Sbjct: 576 FRQM 579



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 86/206 (41%), Gaps = 20/206 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D Y    ++    +HG V+    L +K+R  G+     T  +++D   +  K D A
Sbjct: 373 GIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDA 432

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD-FDAINVLE-EMIFSGIVPDVQTF 518
           +  F   R +   ++     +++ +L+  L  C RD +D    L  EMI  GI P+   F
Sbjct: 433 MAQF--GRLISEGLTPDA--VVFRNLIHGL--CARDKWDKAEELAVEMIGRGICPNNIFF 486

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC---------KYLSN--- 566
           + L+ H   +G     + +F ++ +  V+ D   +  LI  YC         K L     
Sbjct: 487 NTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVL 546

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEA 592
             + P+  T   +     K GR ++A
Sbjct: 547 DGVKPNEVTYNTMINGYCKNGRIEDA 572



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 23/172 (13%)

Query: 483 YSSLLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLMYHFA-LQGDEKIVQKLFSM 540
           Y++++  L +  R  D A ++ ++M+  G+ PDV T++ ++   +  +  +K    L  M
Sbjct: 205 YNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRM 264

Query: 541 VRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGR 588
           V+ NG  P+      L+  YC            K +    + PD  T   L   L K GR
Sbjct: 265 VK-NGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGR 323

Query: 589 RKEAAAVEERCEKINDVPSLALRG---HIWAVSSADLTRVHSI----YRNSI 633
             EA  + +   K    P+ A  G   H +A +   L ++H +     RN I
Sbjct: 324 SMEARKIFDSMVKRGHKPNSATYGTLLHGYA-TEGSLVKMHHLLDMMVRNGI 374



 Score = 42.7 bits (99), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 84/449 (18%), Positives = 169/449 (37%), Gaps = 76/449 (16%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++N ++  Y  +GK  +A+  F+++  +G  P+  TY  ++ +L   G+   A ++F ++
Sbjct: 275 THNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSM 334

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
                K  S  Y  L+ G+       +   LL+ M  +G                   IQ
Sbjct: 335 VKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNG-------------------IQ 375

Query: 294 GANEFLREMLPDKRIKNV---RYYEDGSDDD----------EDENDDNNSGVRIAYGVQL 340
                     PD  I N+    Y + G  DD          +  N D      + YG+  
Sbjct: 376 ----------PDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDT-----VTYGI-- 418

Query: 341 KPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQ- 399
              +D   +   +D+   +   L+++   +    +V + L H       W     +A + 
Sbjct: 419 --VMDALCMVGKVDDAMAQFGRLISEG--LTPDAVVFRNLIHGLCARDKWDKAEELAVEM 474

Query: 400 --PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA 457
              G   +      +L  L + G V     +   +    ++    T   +ID Y +  K 
Sbjct: 475 IGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKV 534

Query: 458 DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
           D A K   +   L G        + Y++++    K  R  DA ++  +M   G+ P + T
Sbjct: 535 DEAAKLL-EGMVLDGVKPN---EVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVT 590

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--------------Y 563
           +S ++            ++L+  + ++G++ D   + +++   C+              Y
Sbjct: 591 YSTILQGLFQARRTAAAKELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLY 650

Query: 564 LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           L + +L  +  T  ++  +L K GR  EA
Sbjct: 651 LIDFHL--ENRTFNIMIDALLKGGRHDEA 677


>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 94/226 (41%), Gaps = 24/226 (10%)

Query: 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR 445
           PE A   F  VA QP   H   +   ML ++  HG V  V ++   ++   ++    T  
Sbjct: 81  PEEALELFLSVARQPRVVHTTESCNYMLELMRAHGRVGDVAQVFDLMQRQIIKANVGTFC 140

Query: 446 LIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLL----YSSLLRTLTKCKRDFDAIN 501
            +    G+     +A  A         P+ K   ++L    Y+ L+  L K   D +A++
Sbjct: 141 TVFGAVGVEGGLRSAPVAL--------PVMKEAGIVLNAYTYNGLIYFLVKSGFDREAMD 192

Query: 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI---- 557
           V + M   G+VP V+T+S LM  F  + D + V  L   +   GV P+ Y + + I    
Sbjct: 193 VYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVLG 252

Query: 558 ------QAY--CKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
                 +AY   + +      PD  T  +L + L   GR  +A  V
Sbjct: 253 QAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDV 298



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 1/205 (0%)

Query: 71   IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
            ++  A+  +   +  L I E +  N  +     T + + + L KS+   E   L   + S
Sbjct: 806  LILDAMGKSMRIEDMLKIQEEMH-NKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMS 864

Query: 131  SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
              F      +  L+      G++E   + ++E  +     +   YNI+++ Y   G   +
Sbjct: 865  EGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEK 924

Query: 191  AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
              E F  ++++G  P+ ++YTV+I+ L   G+L+  L  F  L  M ++     Y +L+ 
Sbjct: 925  VCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIH 984

Query: 251  GFVGVERFDEAKSLLNEMRDDGKFP 275
            G     R +EA SL N+M   G  P
Sbjct: 985  GLGKSGRLEEALSLYNDMEKKGIAP 1009



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 109/554 (19%), Positives = 207/554 (37%), Gaps = 85/554 (15%)

Query: 72  VTHALRSAPNAD--SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDIS 129
           V H LRSA  AD   AL +  ++   P   H   + + +  ++    R  ++  +  D+ 
Sbjct: 69  VVHMLRSAAAADPEEALELFLSVARQPRVVHTTESCNYMLELMRAHGRVGDVAQVF-DLM 127

Query: 130 SSKFLNVSVN-FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN 188
             + +  +V  F  +       G L          ++   +L+  +YN ++    K+G +
Sbjct: 128 QRQIIKANVGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLIYFLVKSGFD 187

Query: 189 FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
            EA++ ++ +  +G +P  RTY+V+   ++  GK   A                      
Sbjct: 188 REAMDVYKAMAADGVVPTVRTYSVL---MLAFGKRRDA---------------------- 222

Query: 249 VEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKR 307
            E  VG         LL EM   G  P   +  + +  + + G ++ A   LR+M     
Sbjct: 223 -ETVVG---------LLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKM----- 267

Query: 308 IKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADA 367
                  E+G   D   N            V ++   D   LA+  D +     S     
Sbjct: 268 ------EEEGCKPDVVTNT-----------VLIQILCDAGRLADAKDVFWKMKASDQKPD 310

Query: 368 KFVWTTRL-VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVD 426
           +  + T L  C      +S    W+         GY  +V +    +  L + G V+   
Sbjct: 311 RVTYITLLDKCGDSGDSRSVSEIWNAL----KADGYNDNVVSYTAAVDALCQVGRVDEAL 366

Query: 427 RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSL 486
            +  +++  G+     +   +I  +  + + + AL+ F +   + GP       +L+   
Sbjct: 367 DVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELF-NHMNIHGPTPNGYTHVLF--- 422

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           +    K      A+   E M   GIVPDV   + ++Y  A  G   + +++F  ++  G+
Sbjct: 423 INYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGI 482

Query: 547 EPDAYMFKVLIQAYCKYLSNSN-------------LMPDAATKELLKKSLWKEGRRKEAA 593
            PD   + ++I+  C   SN++               PD      L   L+K GR  EA 
Sbjct: 483 SPDNITYTMMIKC-CSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAW 541

Query: 594 AVEERCEKINDVPS 607
            +    +++N  P+
Sbjct: 542 KIFYELKEMNLEPT 555



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 93/226 (41%), Gaps = 28/226 (12%)

Query: 401  GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
            G   D +    +L  + +   +E + ++  ++ + G +  + T   II     SK  D A
Sbjct: 796  GCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEA 855

Query: 461  LKAFHD------DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
            +  ++         T C           Y  LL  L K     DA  + +EM+  G  P+
Sbjct: 856  INLYYQLMSEGFSPTPC----------TYGPLLDGLLKDGNIEDAEALFDEMLECGCEPN 905

Query: 515  VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------K 562
               ++ L+  + + GD + V +LF  + + G+ PD   + V+I   C            K
Sbjct: 906  CAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFK 965

Query: 563  YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
             L++  L PD  T  LL   L K GR +EA ++    EK    P+L
Sbjct: 966  QLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNL 1011



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 49/106 (46%)

Query: 143  LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
            L+     SG LE  LS +N+  ++    +  +YN ++    K GK  EA + + +++ +G
Sbjct: 982  LIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKG 1041

Query: 203  AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
              PN  TY  +I      G  ++A   +  + +   +  S  Y+ L
Sbjct: 1042 WKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPNSSTYMQL 1087



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 38/233 (16%), Positives = 99/233 (42%), Gaps = 17/233 (7%)

Query: 44  DSIRLAVRSNSSNSL-SSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQ 102
           +++ +++++ S N+L   L+++ L+D             A+   S M+ L  +P+    +
Sbjct: 758 ENLGVSLKTGSYNALICGLVDEDLIDI------------AEELFSEMKRLGCDPD----E 801

Query: 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
            T H +   + KS R  ++  +  ++ +  + +  V +  ++     S  L+  ++ + +
Sbjct: 802 FTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQ 861

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
                   +  +Y  ++    K G   +A   F ++++ G  PN   Y +++      G 
Sbjct: 862 LMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGD 921

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            +   E+F ++    +    K Y ++++      R ++  S   ++ D G  P
Sbjct: 922 TEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEP 974


>gi|356565780|ref|XP_003551115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Glycine max]
          Length = 622

 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 79/151 (52%), Gaps = 3/151 (1%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           ++   A  G++E   +++ K++  G++    T   +I  YGI+ K D ++K   D  ++ 
Sbjct: 206 LVNAFAEFGNIEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDESIKLL-DLMSIE 264

Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
           G +     +   + L+R L K +   +A NV+ +M  SG+ PDV +F+ +   +A  G  
Sbjct: 265 GNVKPN--LKTCNMLIRALCKMEHTSEAWNVVYKMTTSGMQPDVVSFNTVAISYAQNGKT 322

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
             V+ +   +R+NG++P+     ++I  YC+
Sbjct: 323 VQVEAMILEMRRNGLKPNDRTCTIIISGYCR 353



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 91/465 (19%), Positives = 186/465 (40%), Gaps = 83/465 (17%)

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           +S   VM++  K+GK  EA+  F+ +I+ G  P+  TYT ++  L           + S 
Sbjct: 131 QSRTKVMNILIKSGKPQEAIVIFQNLIEGGHQPSLATYTTLLNALTTQKYFKPIHSIVSL 190

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFI 292
           +   ++K  S+ +  LV  F      ++AK ++                  ++M+E G  
Sbjct: 191 VEEKQMKPDSRFFNALVNAFAEFGNIEDAKKVV------------------QKMKESGLK 232

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
             A  +                              N+ ++  YG+  KP    K L   
Sbjct: 233 PSACTY------------------------------NTLIK-GYGIAGKPDESIKLL--- 258

Query: 353 LDEWSPEVVSLLADAK-FVWTTRLVCKVLRHFKSPETAWHFFCWVAYQ---PGYTHDVYA 408
                 +++S+  + K  + T  ++ + L   +    AW+    V Y+    G   DV +
Sbjct: 259 ------DLMSIEGNVKPNLKTCNMLIRALCKMEHTSEAWN----VVYKMTTSGMQPDVVS 308

Query: 409 LEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR 468
              +    A++G    V+ +I ++R +G++    T  +II  Y    K   AL+  +  +
Sbjct: 309 FNTVAISYAQNGKTVQVEAMILEMRRNGLKPNDRTCTIIISGYCREGKVREALRFVYRIK 368

Query: 469 TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
            L    +   L  L +  + T+ +   + + +N++EE     I PDV T+S +M  ++  
Sbjct: 369 DLGLQPNLIILNSLVNGFVDTMDRDGVN-EVLNLMEEFY---IRPDVITYSTIMNAWSQA 424

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATK 576
           G  +  +++++ + ++GV+PD + + +L + Y +             ++ S + P+    
Sbjct: 425 GFLEKCKEIYNNMLKSGVKPDGHAYSILAKGYVRAQEMEKAEELLTVMTKSGVQPNVVIF 484

Query: 577 ELLKKSLWKEGRRKEAAAVEERCEKINDVPSL-ALRGHIWAVSSA 620
             +       GR   A  V ++  +    P+L      IW  + A
Sbjct: 485 TTVMSGWCSVGRMDNAMRVFDKMGEFGVSPNLKTFETLIWGYAEA 529



 Score = 43.5 bits (101), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 41/206 (19%), Positives = 88/206 (42%), Gaps = 14/206 (6%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + +  +M  +S +G LE     +N   +        +Y+I+   Y +  +  +A E    
Sbjct: 412 ITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDGHAYSILAKGYVRAQEMEKAEELLTV 471

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G  PN   +T ++    ++G++D+A+ VF  +    +    K +  L+ G+   ++
Sbjct: 472 MTKSGVQPNVVIFTTVMSGWCSVGRMDNAMRVFDKMGEFGVSPNLKTFETLIWGYAEAKQ 531

Query: 258 FDEAKSLLNEMRDDGKFPGRA-MRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
             +A+ +L  M +    P ++ + +  E     G  +GA   L  +  +K I ++    D
Sbjct: 532 PWKAEGMLQIMEEFHVQPKKSTILLVAEAWCFAGLKEGAKTLLITVKTEKMINSI----D 587

Query: 317 GSDDDEDENDDNNSGVRIAYGVQLKP 342
           G         DNN   +++  +  KP
Sbjct: 588 G---------DNNITAKMSEKICQKP 604


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 83/168 (49%)

Query: 108 LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA 167
           L     KS+R  E K+L+ ++        +V +  LMQ     G  +  L+ + E     
Sbjct: 374 LINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYG 433

Query: 168 KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227
            L +  +Y+I++  + K G   EA++  + + ++   PN   +T++IE +   GKL+ A 
Sbjct: 434 LLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAK 493

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           E+FS L    I+ T + Y ++++G +     DEA  L  +M DDG  P
Sbjct: 494 ELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLP 541



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 92/210 (43%), Gaps = 18/210 (8%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G TH+VY+L  ++  L R  HV+    ++ K+   G+    ST   +I+      K   A
Sbjct: 118 GVTHNVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEA 177

Query: 461 LKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           ++ F++  R    P      ++ Y++++  L K      A++V ++M  +G  PDV T++
Sbjct: 178 VELFNEMVRRGHEPN-----VISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYN 232

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNS 567
            ++             +  S +   G+ P+ + +  ++  +C            K +   
Sbjct: 233 TIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGR 292

Query: 568 NLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
           ++MPD  T  +L   L KEG   EA  V E
Sbjct: 293 DVMPDTVTLTILVDGLCKEGMVSEARLVFE 322



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 82/173 (47%), Gaps = 1/173 (0%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  +  S  ++   S   E   +A    T +Y+ +M    + G+  EA+  F+++   G
Sbjct: 374 LINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYG 433

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +PN  TY+++++     G LD AL++  ++   +++     + IL+EG     + + AK
Sbjct: 434 LLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAK 493

Query: 263 SLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
            L +++  DG  P  R   V ++ + + G    A +  R+M  D  + N   Y
Sbjct: 494 ELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSY 546



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 74/170 (43%)

Query: 99  SHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLS 158
           +HN  +L+ L   L +        +++G +        +  F  L+      G ++  + 
Sbjct: 120 THNVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVE 179

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
            +NE  +R    +  SYN +++   KTG    AV+ F+++   G  P+  TY  +I+ L 
Sbjct: 180 LFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLC 239

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
               ++ A+E  S +    I      Y  +V GF  + + +EA  L  EM
Sbjct: 240 KDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEM 289



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 13/111 (11%)

Query: 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           V E M   G+ P++ T++ LM  + LQ      +K+F ++ + G  P  + + +LI  +C
Sbjct: 320 VFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFC 379

Query: 562 KY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAV-EERC 599
           K             + +  L PD  T   L + L + GR KEA  + +E C
Sbjct: 380 KSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMC 430



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 110/525 (20%), Positives = 197/525 (37%), Gaps = 75/525 (14%)

Query: 56  NSLSSLLNDRLLDPFIVTHALRSAP----------NADSALSI---MEALKSNPNFSHNQ 102
           +++ SL N   +D F VTH + S            + D A+SI   M  L  +P      
Sbjct: 105 STVVSLCNQ--MDLFGVTHNVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPT----A 158

Query: 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
           ST +AL   L    +  E   L  ++         +++  ++     +G+  + +  + +
Sbjct: 159 STFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKK 218

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
             Q        +YN ++    K     +A+E   +++D G  PN  TY  M+     LG+
Sbjct: 219 MEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQ 278

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA 282
           L+ A  +F  +    +   +    ILV+G        EA+ +   M + G  P  +   A
Sbjct: 279 LNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNA 338

Query: 283 L-----------------ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDEN 325
           L                 E M   G   G + +   +L +   K+ R  E  S   E  +
Sbjct: 339 LMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSY--NILINGFCKSRRMDEAKSLLAEMYH 396

Query: 326 DDNNSGVRIAYGVQLKPWLD---PKALANTLDEWS-----PEVV--SLLADAKFVWTTRL 375
              N    + Y   ++       PK   N   E       P +V  S+L D  F     L
Sbjct: 397 KALNPDT-VTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDG-FCKHGHL 454

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
             + L+  KS +           +P   H    +E M       G +E+   L +KL +D
Sbjct: 455 D-EALKLLKSMQEK-------KLEPNIVHHTILIEGMFIA----GKLEVAKELFSKLFAD 502

Query: 436 GMRLPFSTIRLIIDFY---GISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK 492
           G+R    T  ++I      G+S +A    +   DD  L    S       Y+ +++   +
Sbjct: 503 GIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCS-------YNVMIQGFLQ 555

Query: 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL 537
            +    AI +++EM+      ++ TF  L+    L+  ++I+ + 
Sbjct: 556 NQDSSTAIRLIDEMVGKRFSANLSTFQMLL---DLESQDEIISQF 597



 Score = 46.2 bits (108), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 6/160 (3%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           D   L  ++  L + G V     +   +   G+    ST   ++D Y + +  + A K F
Sbjct: 297 DTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVF 356

Query: 465 HD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
               R  C P         Y+ L+    K +R  +A ++L EM    + PD  T+S LM 
Sbjct: 357 EIMIRQGCAPGVH-----SYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQ 411

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY 563
                G  K    +F  +   G+ P+   + +L+  +CK+
Sbjct: 412 GLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKH 451



 Score = 46.2 bits (108), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 14/123 (11%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS+L++ L +  R  +A+N+ +EM   G++P++ T+S L+  F   G      KL   ++
Sbjct: 406 YSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQ 465

Query: 543 QNGVEPDAYMFKVLIQA-------------YCKYLSNSNLMPDAATKELLKKSLWKEGRR 589
           +  +EP+     +LI+              + K  ++  + P   T  ++ K L KEG  
Sbjct: 466 EKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADG-IRPTIRTYTVMIKGLLKEGLS 524

Query: 590 KEA 592
            EA
Sbjct: 525 DEA 527


>gi|357481229|ref|XP_003610900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512235|gb|AES93858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1508

 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 117/258 (45%), Gaps = 13/258 (5%)

Query: 67  LDPFIVTH-ALRSAPNADSAL-------SIMEALKSNPNFSHNQSTLHALATVLAKSQRN 118
           L P I+T+  L SA + +S L       S ME+ +  P+      T +A+ +V  +    
Sbjct: 332 LRPDIITYNTLISACSRESNLKEAIGVFSHMESNRCQPDLW----TYNAMISVYGRCGFA 387

Query: 119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV 178
            + + L   + S+ F   +V + +L+  +S  G+ E V     E  +        +YN +
Sbjct: 388 LKAEHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTI 447

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI 238
           + +Y K G++ EA+  +R +   G  P++ TYTV+I+ L    K++ A +V S +    +
Sbjct: 448 IHMYGKHGRHDEALRLYRDMKSSGRNPDAVTYTVLIDLLGKASKIEEASKVMSEMLDAGV 507

Query: 239 KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQGANE 297
           K T   Y  L+  +  V R  EA+   N MR+ G K    A  V L+       I+ A  
Sbjct: 508 KPTLHTYSALICAYAKVGRRVEAEETFNRMRESGIKADHLAYSVMLDFFLRFNEIKKAAA 567

Query: 298 FLREMLPDKRIKNVRYYE 315
             +EM+      +   YE
Sbjct: 568 LYQEMIEAGFTPDTGLYE 585



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 75/347 (21%), Positives = 148/347 (42%), Gaps = 28/347 (8%)

Query: 217  LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
            L   GKLD+ALE + +   +   R+   Y  L+      E+FD A  L ++MR +G  P 
Sbjct: 692  LCKAGKLDAALEEYRSRGGLGTFRSCTMYESLIHECTKSEQFDIASQLFSDMRFNGVEPS 751

Query: 277  RAMRVALERMQ-EMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIA 335
              +  ++  +   +GF + A   L             Y+ + +D   D    +   +   
Sbjct: 752  ECLYQSMVSVYCRIGFPETAQHLL-------------YHAEKNDIILDNVTVHIIDIIET 798

Query: 336  YGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCW 395
            YG +LK W   +++   L +   ++     D K VW   +           E A   F  
Sbjct: 799  YG-KLKMWQSAESIVENLRQRCSKM-----DRK-VWNALIHAYAFS--GCYERARAIFNT 849

Query: 396  VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455
            +  + G +  V ++  +L  L   G +  +  +I +L+   +++  S+I L+++ +  + 
Sbjct: 850  MMRE-GPSPTVESVNGLLQALIVDGRLSELYVVIQELQDMDLKISKSSILLMLEAFAQAG 908

Query: 456  KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
                  K ++  +        F  M LY  ++  L + KR  D   +L EM  +G  PD+
Sbjct: 909  NLFEVQKVYNGMKA----AGYFPTMHLYRLMIGLLCRFKRVRDVRVMLSEMGEAGFKPDL 964

Query: 516  QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            Q F+ ++  ++   + + +  ++ M++  G+ PD   +  LI  YC+
Sbjct: 965  QIFNSVLKLYSSIEEFQNMGVIYQMIQDAGLAPDEETYNTLITMYCR 1011



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 98/452 (21%), Positives = 176/452 (38%), Gaps = 82/452 (18%)

Query: 135  NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
            NV+V+ +++++ Y      +   S     RQR   +  + +N ++  YA +G    A   
Sbjct: 787  NVTVHIIDIIETYGKLKMWQSAESIVENLRQRCSKMDRKVWNALIHAYAFSGCYERARAI 846

Query: 195  FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
            F  ++ EG  P   +   +++ L+  G+L     V   L  M +K +    L+++E F  
Sbjct: 847  FNTMMREGPSPTVESVNGLLQALIVDGRLSELYVVIQELQDMDLKISKSSILLMLEAFAQ 906

Query: 255  VERFDEAKSLLNEMRDDGKFPG-----------------RAMRVALERMQEMGFIQGANE 297
                 E + + N M+  G FP                  R +RV L  M E GF      
Sbjct: 907  AGNLFEVQKVYNGMKAAGYFPTMHLYRLMIGLLCRFKRVRDVRVMLSEMGEAGF------ 960

Query: 298  FLREMLPDKRIKN--VRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDP-KALANTLD 354
                  PD +I N  ++ Y   S  +E +N      + + Y +     L P +   NTL 
Sbjct: 961  -----KPDLQIFNSVLKLY---SSIEEFQN------MGVIYQMIQDAGLAPDEETYNTL- 1005

Query: 355  EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETA---WHFFCWVAYQPGYTHDVYALEK 411
                                + C+  R    PE      H    +  +P    D Y    
Sbjct: 1006 ------------------ITMYCRDHR----PEEGLSLMHKMKSLGLEP--KRDTY--RS 1039

Query: 412  MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY---GISKKADAALKAFHDDR 468
            M+   ++    +  + L  +LRS+G +L  S   L++  Y   G  +KA+  L+   +  
Sbjct: 1040 MIAAFSKQQLYDQAEELFEELRSNGYKLDRSFYHLMMKMYRTSGDHQKAENLLEIMKEAG 1099

Query: 469  TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
                  +   LM+ Y        K  +  +A  +L+ +   G V D   +S ++  +  +
Sbjct: 1100 IEPNTATMHLLMVSYG-------KSGQPEEADRILKNLRTMGAVLDTLPYSSVIDAYLKK 1152

Query: 529  GDEKI-VQKLFSMVRQNGVEPDAYMFKVLIQA 559
            GD K  ++KL  M ++  +EPD  ++   I+A
Sbjct: 1153 GDAKAGIEKLTEM-KEAAIEPDHRIWTCFIRA 1183



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/198 (20%), Positives = 89/198 (44%), Gaps = 16/198 (8%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G++ D      +L   ++ G+ E V  +  ++   G      T   II  YG   + D A
Sbjct: 401 GFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTIIHMYGKHGRHDEA 460

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           L+ + D ++      +    + Y+ L+  L K  +  +A  V+ EM+ +G+ P + T+S 
Sbjct: 461 LRLYRDMKS----SGRNPDAVTYTVLIDLLGKASKIEEASKVMSEMLDAGVKPTLHTYSA 516

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSN 568
           L+  +A  G     ++ F+ +R++G++ D   + V++  + ++            +  + 
Sbjct: 517 LICAYAKVGRRVEAEETFNRMRESGIKADHLAYSVMLDFFLRFNEIKKAAALYQEMIEAG 576

Query: 569 LMPDAATKELLKKSLWKE 586
             PD    E++  +L +E
Sbjct: 577 FTPDTGLYEVMLPALVRE 594



 Score = 46.2 bits (108), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 80/187 (42%), Gaps = 22/187 (11%)

Query: 422 VELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF-HDDRTLCGPISKFKLM 480
           +EL+D  + K    G+R    T   +I           A+  F H +   C P      +
Sbjct: 321 IELLDE-VGKF---GLRPDIITYNTLISACSRESNLKEAIGVFSHMESNRCQPD-----L 371

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
             Y++++    +C     A ++ E++  +G  PD  T++ L+Y F+ +G+ + V+ +   
Sbjct: 372 WTYNAMISVYGRCGFALKAEHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEE 431

Query: 541 VRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGR 588
           + + G   D   +  +I  Y K+            + +S   PDA T  +L   L K  +
Sbjct: 432 MVKMGFGKDEMTYNTIIHMYGKHGRHDEALRLYRDMKSSGRNPDAVTYTVLIDLLGKASK 491

Query: 589 RKEAAAV 595
            +EA+ V
Sbjct: 492 IEEASKV 498



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 12/117 (10%)

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           AI +L+E+   G+ PD+ T++ L+   + + + K    +FS +  N  +PD + +  +I 
Sbjct: 320 AIELLDEVGKFGLRPDIITYNTLISACSRESNLKEAIGVFSHMESNRCQPDLWTYNAMIS 379

Query: 559 AY--CKY----------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIN 603
            Y  C +          L ++   PDA T   L  +  KEG  ++   + E   K+ 
Sbjct: 380 VYGRCGFALKAEHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMG 436



 Score = 40.4 bits (93), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 87/208 (41%), Gaps = 12/208 (5%)

Query: 360  VVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQ----PGYTHDVYALEKMLTI 415
            ++S + +A F    ++   VL+ + S E   +    V YQ     G   D      ++T+
Sbjct: 951  MLSEMGEAGFKPDLQIFNSVLKLYSSIEEFQNM--GVIYQMIQDAGLAPDEETYNTLITM 1008

Query: 416  LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
              R    E    L+ K++S G+     T R +I  +   +  D A + F + R+     +
Sbjct: 1009 YCRDHRPEEGLSLMHKMKSLGLEPKRDTYRSMIAAFSKQQLYDQAEELFEELRS-----N 1063

Query: 476  KFKLMLLYSSLLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
             +KL   +  L+  + +   D   A N+LE M  +GI P+  T   LM  +   G  +  
Sbjct: 1064 GYKLDRSFYHLMMKMYRTSGDHQKAENLLEIMKEAGIEPNTATMHLLMVSYGKSGQPEEA 1123

Query: 535  QKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
             ++   +R  G   D   +  +I AY K
Sbjct: 1124 DRILKNLRTMGAVLDTLPYSSVIDAYLK 1151



 Score = 39.3 bits (90), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 37/191 (19%), Positives = 87/191 (45%), Gaps = 3/191 (1%)

Query: 83   DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
            +  LS+M  +KS       + T  ++    +K Q   + + L  ++ S+ +  +  +F +
Sbjct: 1016 EEGLSLMHKMKS-LGLEPKRDTYRSMIAAFSKQQLYDQAEELFEELRSNGY-KLDRSFYH 1073

Query: 143  LM-QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            LM + Y TSGD +   +     ++     +T + +++M  Y K+G+  EA    + +   
Sbjct: 1074 LMMKMYRTSGDHQKAENLLEIMKEAGIEPNTATMHLLMVSYGKSGQPEEADRILKNLRTM 1133

Query: 202  GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
            GA+ ++  Y+ +I+  +  G   + +E  + +    I+   + +   +         ++A
Sbjct: 1134 GAVLDTLPYSSVIDAYLKKGDAKAGIEKLTEMKEAAIEPDHRIWTCFIRAASLSGEVNDA 1193

Query: 262  KSLLNEMRDDG 272
             +LLN ++  G
Sbjct: 1194 NNLLNALQAVG 1204



 Score = 38.9 bits (89), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 38/207 (18%), Positives = 87/207 (42%), Gaps = 22/207 (10%)

Query: 401  GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
            GY   ++    M+ +L R   V  V  +++++   G +        ++  Y       ++
Sbjct: 924  GYFPTMHLYRLMIGLLCRFKRVRDVRVMLSEMGEAGFKPDLQIFNSVLKLY-------SS 976

Query: 461  LKAFHDDRTLCGPISKFKLML---LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
            ++ F +   +   I    L      Y++L+    +  R  + ++++ +M   G+ P   T
Sbjct: 977  IEEFQNMGVIYQMIQDAGLAPDEETYNTLITMYCRDHRPEEGLSLMHKMKSLGLEPKRDT 1036

Query: 518  FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY------------CKYLS 565
            +  ++  F+ Q      ++LF  +R NG + D   + ++++ Y             + + 
Sbjct: 1037 YRSMIAAFSKQQLYDQAEELFEELRSNGYKLDRSFYHLMMKMYRTSGDHQKAENLLEIMK 1096

Query: 566  NSNLMPDAATKELLKKSLWKEGRRKEA 592
             + + P+ AT  LL  S  K G+ +EA
Sbjct: 1097 EAGIEPNTATMHLLMVSYGKSGQPEEA 1123


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 96/497 (19%), Positives = 194/497 (39%), Gaps = 48/497 (9%)

Query: 83  DSALSIM-EALKSNPNFSHNQSTLHALATVLAKSQR------NHELKTLIGDISSSKFLN 135
           D AL ++ E L+    F  N +T H + + L+K  +        E+  L+   +  +   
Sbjct: 209 DDALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGRAVDEEEIVGLVSKFAEHEVFP 268

Query: 136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF 195
            S+    L+     SG  +      +   +   ++   S N +++   +  + F+ + T 
Sbjct: 269 NSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGR-AREFKRMNTL 327

Query: 196 RQVIDEGAI-PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR-----IKRTSKQYLILV 249
              + E  I PN  T+ ++I HL    ++D ALEVF  +         ++     Y  L+
Sbjct: 328 LAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLI 387

Query: 250 EGFVGVERFDEAKSLLNEMRDDGK-FPGRAM-RVALERMQEMGFIQGANEFLREMLPDKR 307
           +G   V R +E   L+  MR   +  P        ++   +   I+ A E   +M  D  
Sbjct: 388 DGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGV 447

Query: 308 IKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADA 367
             NV       D             RI   V+    +  K L      ++  +       
Sbjct: 448 PPNVVTLNTLVDGMCKHG-------RINGAVEFFNEMQGKGLKGNAVTYTALI------- 493

Query: 368 KFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDR 427
                 R  C V     + E A   F  +  + G + D      +++ L++ G ++    
Sbjct: 494 ------RAFCNV----NNIEKAMELFDEM-LEAGCSPDAIVYYTLISGLSQAGKLDRASF 542

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSL 486
           +++K++  G      +  ++I+ +    K D A +   + +     P       + Y++L
Sbjct: 543 VLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDG-----VTYNTL 597

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF-SMVRQNG 545
           +   +K      A  ++++M+  G+VP V T+  L++ + L G+     K+F  M   + 
Sbjct: 598 ISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSK 657

Query: 546 VEPDAYMFKVLIQAYCK 562
           V P+  ++ +LI + C+
Sbjct: 658 VPPNTVIYNILINSLCR 674



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/258 (20%), Positives = 103/258 (39%), Gaps = 6/258 (2%)

Query: 63  NDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR 117
           N  L++P ++T+      L      +  L ++E ++S P    N  T + L     K+  
Sbjct: 372 NGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASM 431

Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI 177
               + L   ++        V    L+      G +   +  +NE + +    +  +Y  
Sbjct: 432 IEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTA 491

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           ++  +       +A+E F ++++ G  P++  Y  +I  L   GKLD A  V S +    
Sbjct: 492 LIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAG 551

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGAN 296
                  + +L+ GF    + DEA  +L EM + G  P G      +    + G    A+
Sbjct: 552 FSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAH 611

Query: 297 EFLREMLPDKRIKNVRYY 314
             +++M+ +  +  V  Y
Sbjct: 612 RLMKKMVKEGLVPTVVTY 629



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 54/273 (19%), Positives = 105/273 (38%), Gaps = 28/273 (10%)

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           +CKV R     E        +  QP    +      ++    +   +E    L  ++  D
Sbjct: 390 LCKVGRQ----EEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKD 445

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKC 493
           G+     T+  ++D      + + A++ F++   + L G        + Y++L+R     
Sbjct: 446 GVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGN------AVTYTALIRAFCNV 499

Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
                A+ + +EM+ +G  PD   +  L+   +  G       + S +++ G  PD   F
Sbjct: 500 NNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSF 559

Query: 554 KVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEK 601
            VLI  +C            K + N+ + PD  T   L     K G    A  + ++  K
Sbjct: 560 NVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVK 619

Query: 602 INDVPSLALRG---HIWAVSSADLTRVHSIYRN 631
              VP++   G   H + + + +L     I+R+
Sbjct: 620 EGLVPTVVTYGALIHAYCL-NGNLDEAMKIFRD 651



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/198 (19%), Positives = 95/198 (47%), Gaps = 8/198 (4%)

Query: 370 VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
           +W T+L+ ++ R  ++ + AW     +  + G   +  +   +LT L R    + ++ L+
Sbjct: 271 IWLTQLISRLCRSGRT-DRAWDVLHGL-MKLGGVMEAASCNALLTALGRAREFKRMNTLL 328

Query: 430 AKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL---MLLYSSL 486
           A+++   ++    T  ++I+     ++ D AL+ F  ++   G  + F +   ++ Y++L
Sbjct: 329 AEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVF--EKMNGGESNGFLVEPDVITYNTL 386

Query: 487 LRTLTKCKRDFDAINVLEEMIFSG-IVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
           +  L K  R  + + ++E M      +P+  T++ L+  +      +  ++LF  + ++G
Sbjct: 387 IDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDG 446

Query: 546 VEPDAYMFKVLIQAYCKY 563
           V P+      L+   CK+
Sbjct: 447 VPPNVVTLNTLVDGMCKH 464



 Score = 42.7 bits (99), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 90/210 (42%), Gaps = 25/210 (11%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           ++ +L R G V+    L+ ++       P ++    I F  +SK+ D   +A  D+  + 
Sbjct: 198 LIDVLFRKGRVDDALHLLDEMLQPKAEFPPNSNTGHIVFSALSKR-DKVGRAV-DEEEIV 255

Query: 472 GPISKFKLMLLY------SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF 525
           G +SKF    ++      + L+  L +  R   A +VL  ++  G V +  + + L+   
Sbjct: 256 GLVSKFAEHEVFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTAL 315

Query: 526 ALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYL----------------SNSNL 569
               + K +  L + +++  ++P+   F +LI   CK+                 SN  L
Sbjct: 316 GRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFL 375

Query: 570 M-PDAATKELLKKSLWKEGRRKEAAAVEER 598
           + PD  T   L   L K GR++E   + ER
Sbjct: 376 VEPDVITYNTLIDGLCKVGRQEEGLGLVER 405


>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 95/227 (41%), Gaps = 29/227 (12%)

Query: 70  FIVTHALRSAPNADSALSIMEALKSNPNFS-----H----NQSTLHAL------------ 108
           F     L   PNA +  ++M+ L    N S     H    N S+L+ +            
Sbjct: 189 FTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSII 248

Query: 109 ATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAK 168
              L K +R  E + L  ++         +++ +LM W       E     +NE   +  
Sbjct: 249 IDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLM-W-------EEAKRLFNEMVNQGV 300

Query: 169 LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALE 228
             +  ++N+++ V  K GK  EA +    +I  G +PN  TY  +IE    +G L+SA E
Sbjct: 301 QPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARE 360

Query: 229 VFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +F ++P    +     Y +L+ G+    + +EA  L N M   GK P
Sbjct: 361 LFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRP 407



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           ++ L+  L K  +  +A ++LE MI  GIVP++ T++ L+  F L GD    ++LF  + 
Sbjct: 307 FNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMP 366

Query: 543 QNGVEPDAYMFKVLIQAYCKY--------LSNSNLM----PDAATKELLKKSLWKEGRRK 590
             G EPD   + VLI  YCK         L N  L     PD  T   L   L++ G+  
Sbjct: 367 SKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVG 426

Query: 591 EA 592
           +A
Sbjct: 427 DA 428



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 92/227 (40%), Gaps = 6/227 (2%)

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
           N     N  T + L  VL K  +  E K L+  +     +   + + +L++ +   GDL 
Sbjct: 297 NQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLN 356

Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
                +     +        Y ++++ Y KT K  EA++ +  ++  G  P+ +TY  ++
Sbjct: 357 SARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALL 416

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD-DGK 273
             L   GK+  A ++F  + +  I      Y I + G        EA  L N+++  + K
Sbjct: 417 TGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIK 476

Query: 274 FPGRAMRVALERMQEMGFIQGANEFL-----REMLPDKRIKNVRYYE 315
                    ++ + + G ++ A E        E+ PD    N+  +E
Sbjct: 477 LDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHE 523



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 77/394 (19%), Positives = 143/394 (36%), Gaps = 40/394 (10%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           S+  ++S  AK     +    + Q+   G  P+  T  +++  L N+ ++   L V + +
Sbjct: 98  SFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGI 157

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER-MQEMGFI 292
                      Y  L++G     R  +A  L   M+  G  P       L + +   G I
Sbjct: 158 LRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNI 217

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKAL--- 349
             A +  +EML D  +                           YG+  KP +   ++   
Sbjct: 218 SIALKLHQEMLNDSSL---------------------------YGINFKPVVISYSIIID 250

Query: 350 ANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYAL 409
           A   D    E   L  + K    T  V          E A   F  +  Q G   +V   
Sbjct: 251 ALCKDRREDEARDLFEEMKVQGMTPTVISYTSLMW--EEAKRLFNEMVNQ-GVQPNVVTF 307

Query: 410 EKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DR 468
             ++ +L + G V     L+  +   G+     T   +I+ + +    ++A + F     
Sbjct: 308 NVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPS 367

Query: 469 TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
             C P      ++ Y+ L+    K  +  +A+ +   M+  G  PDV+T+  L+      
Sbjct: 368 KGCEPD-----VICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQG 422

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           G     +KLF +++  G+  D Y++ + +   CK
Sbjct: 423 GKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCK 456



 Score = 45.8 bits (107), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 50/111 (45%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           Y I ++   K G  FEA+E F ++       +   +  +I+ L   GKL++A E+F  LP
Sbjct: 447 YGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLP 506

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER 285
              ++     Y I++  F    +  +A  L  +M  +G  P +     L R
Sbjct: 507 QEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIR 557


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 98/214 (45%), Gaps = 8/214 (3%)

Query: 69  PFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT 123
           P +VT+      L      D    ++E + +    + N  T + L   L    R+ E  +
Sbjct: 99  PTVVTYSTLIDGLCRDHEVDKGCKLLEEM-AGRGCAPNAVTYNTLVNALLGQGRSKEAFS 157

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE--SYNIVMSV 181
           L+  ++++      + F  +++     G++E      +E       LS +  ++N V+  
Sbjct: 158 LLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDG 217

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
             K  +  +A   F++ ++ G  PN  TY+ +I+ L  + K+D AL++ + +  +  +  
Sbjct: 218 LCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRAN 277

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +  Y  +V+G + V R ++A  +L +MRD G  P
Sbjct: 278 TVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLP 311



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 10/217 (4%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           L+D F     LR A        + E L++   F  +  T   L   L +S R  E   ++
Sbjct: 319 LIDGFFKRQRLREAVGL-----LREMLEAG--FHPSVVTYTTLCHGLCRSGRFDEAVEIL 371

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE--SYNIVMSVYA 183
             +++      ++ + +++     +G +   L  + E   R ++++    +Y+ ++    
Sbjct: 372 DYMAARGCAPNAITYSSIVDGLCKAGRVTEALG-YFEKMARDEVVAPHVIAYSALIDGLC 430

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           K GK  EA E   ++I  G IP+  T++++I  L + G++D+ LE+F  +          
Sbjct: 431 KAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMV 490

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR 280
            Y  LV+      R DEA  L  +MR DG  P R+ R
Sbjct: 491 TYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTR 527



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 87/213 (40%), Gaps = 2/213 (0%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T   L   L+K  +  E   L+  +        +V +  ++      G +E  +   
Sbjct: 242 NVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVL 301

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            + R    L    +YN ++  + K  +  EAV   R++++ G  P+  TYT +   L   
Sbjct: 302 RQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRS 361

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM-RDDGKFPGRAM 279
           G+ D A+E+   +        +  Y  +V+G     R  EA     +M RD+   P    
Sbjct: 362 GRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIA 421

Query: 280 RVAL-ERMQEMGFIQGANEFLREMLPDKRIKNV 311
             AL + + + G I  A EFL  M+   RI +V
Sbjct: 422 YSALIDGLCKAGKIDEAYEFLERMIRAGRIPDV 454



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 92/465 (19%), Positives = 172/465 (36%), Gaps = 72/465 (15%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y  ++    K  +  EA + F +   +G  P   TY  MI+ L   G++++AL ++  +
Sbjct: 32  TYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDM 91

Query: 234 PL-MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGF 291
            +    + T   Y  L++G       D+   LL EM   G  P       L   +   G 
Sbjct: 92  AIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGR 151

Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWL---DPKA 348
            + A   L +M  +     +                      I +G+ +K      + +A
Sbjct: 152 SKEAFSLLEQMAANGCPPEL----------------------ITFGLIIKGLCKEGEIEA 189

Query: 349 LANTLDEW-------SPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPG 401
               +DE        SP+V++      F      +CK  R   +     H     A + G
Sbjct: 190 AFRVVDEMFMIESGLSPDVIT------FNSVLDGLCKEQRILDA-----HNVFKRALERG 238

Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID-FYGISKKADA- 459
              +V     ++  L++   ++   +L+AK+   G R    T   ++D    + +  DA 
Sbjct: 239 CRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAV 298

Query: 460 -ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
             L+   D   L   ++       Y++L+    K +R  +A+ +L EM+ +G  P V T+
Sbjct: 299 VVLRQMRDAGCLPDAVT-------YNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTY 351

Query: 519 SGLMYHFALQG--DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC-------------KY 563
           + L +     G  DE +  ++   +   G  P+A  +  ++   C             K 
Sbjct: 352 TTLCHGLCRSGRFDEAV--EILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKM 409

Query: 564 LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
             +  + P       L   L K G+  EA    ER  +   +P +
Sbjct: 410 ARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDV 454



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 12/130 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ YS+L+  L K  +  +A   LE MI +G +PDV TFS L+      G      +LF 
Sbjct: 419 VIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFR 478

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEG 587
            + + G  PD   +  L+   C+             + +  L PD +T+  +   L +  
Sbjct: 479 GMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGLLEVN 538

Query: 588 RRKEAAAVEE 597
           R ++A  +++
Sbjct: 539 RDEDAKRIQD 548


>gi|225450630|ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial [Vitis vinifera]
 gi|296089757|emb|CBI39576.3| unnamed protein product [Vitis vinifera]
          Length = 586

 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 100/496 (20%), Positives = 193/496 (38%), Gaps = 76/496 (15%)

Query: 67  LDPFIVTHALRSAPNADSALSIME-ALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           L P  V   +    N D AL I + A K + NF+HN  T  A+   L+K++    ++TLI
Sbjct: 99  LSPKRVVSMISRQQNLDLALQIFDHAGKFHRNFAHNYETYLAMIEKLSKARAFEPMETLI 158

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
             +  S+       F+ +++ Y  +G  +L + T+          S  S+N +++   + 
Sbjct: 159 SQLHKSQIKCGENLFITVIRNYGFAGRPKLAIRTFLRIPSFGLQPSVRSFNTLLNTLVQN 218

Query: 186 GKNFEAVE-TFRQVIDE-GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
            K F+ V   F+    + G +PN  T  ++++ L     +D+A+ V   +P M       
Sbjct: 219 -KRFDLVHLMFKNCRKKFGIVPNVFTCNILVKALCKKNDIDAAIRVLEEMPAMGFIPNVV 277

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREM 302
            Y  ++ G+V       A+ +  E+ D G  P      + ++   + G    A + + EM
Sbjct: 278 TYTTILGGYVSKGDMVGARRVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEM 337

Query: 303 LPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVS 362
                             +E+  + N+    + YGV ++ +   K         S EV++
Sbjct: 338 ------------------EENRVEPND----VTYGVIIEAYCKEKK--------SGEVLN 367

Query: 363 LLAD---AKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH 419
           LL D    K++ ++ L C+V                                 + +L   
Sbjct: 368 LLDDMLEKKYIPSSALCCRV---------------------------------IDMLCEE 394

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL 479
           G VE+   L  KL         +    +I +     K   A K F +      P +    
Sbjct: 395 GKVEVACELWKKLLKKNCTPDNAITSTLIHWLCKEGKVWEARKLFDEFEKGSIPST---- 450

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
            L Y++L+  + +     +A  + + M+  G VP+  T++ L+  F   G+ +   ++  
Sbjct: 451 -LTYNALIAGMCEGGELPEAARLWDNMVEKGCVPNAFTYNMLIKGFCKVGNAREGIRVME 509

Query: 540 MVRQNGVEPDAYMFKV 555
            +  NG  P+   + +
Sbjct: 510 EMLDNGCLPNKATYAI 525



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 7/145 (4%)

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK-FK 478
           G  +L  R   ++ S G++    +   +++    +K+ D     F + R   G +   F 
Sbjct: 184 GRPKLAIRTFLRIPSFGLQPSVRSFNTLLNTLVQNKRFDLVHLMFKNCRKKFGIVPNVFT 243

Query: 479 LMLLYSSLLRTLTKCKRDFDA-INVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL 537
             +L  +L +     K D DA I VLEEM   G +P+V T++ ++  +  +GD    +++
Sbjct: 244 CNILVKALCK-----KNDIDAAIRVLEEMPAMGFIPNVVTYTTILGGYVSKGDMVGARRV 298

Query: 538 FSMVRQNGVEPDAYMFKVLIQAYCK 562
           F  +   G  PD   + +L+  YCK
Sbjct: 299 FGEILDRGWVPDPTTYTILMDGYCK 323



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 38/231 (16%), Positives = 89/231 (38%), Gaps = 34/231 (14%)

Query: 14  KAFTQLQTRSFVRAPFTNKLAL--YLRRAQLIDSIRLA---------------------- 49
           + F ++  R +V  P T  + +  Y ++ + +D++++                       
Sbjct: 297 RVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIEAY 356

Query: 50  VRSNSSNSLSSLLNDRLLDPFIVTHALRS--------APNADSALSIMEALKSNPNFSHN 101
            +   S  + +LL+D L   +I + AL              + A  + + L    N + +
Sbjct: 357 CKEKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKKLLKK-NCTPD 415

Query: 102 QSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWN 161
            +    L   L K  +  E + L  +      +  ++ +  L+      G+L      W+
Sbjct: 416 NAITSTLIHWLCKEGKVWEARKLFDEFEKGS-IPSTLTYNALIAGMCEGGELPEAARLWD 474

Query: 162 EYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
              ++  + +  +YN+++  + K G   E +    +++D G +PN  TY +
Sbjct: 475 NMVEKGCVPNAFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNKATYAI 525


>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
          Length = 700

 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 8/190 (4%)

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           V KVL      + A  FF W   Q GY H+  A   M+ IL R      +  L+ K+++ 
Sbjct: 186 VVKVLNLQTDAQNALRFFQWADKQEGYDHNTDAYFTMIDILGRAKMFTELQSLLQKMQTQ 245

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLL---YSSLLRTLTK 492
           G  +  S +   +  YG S +   +L+AF+  + +      ++  L+   Y+S+L +L K
Sbjct: 246 GREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEM-----GYEPGLIDTAYNSVLVSLVK 300

Query: 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYM 552
            K+   A N+  +MI +G+  +  T++ ++  F L+   +   KL   + QN   PD   
Sbjct: 301 NKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVT 360

Query: 553 FKVLIQAYCK 562
           + ++I A CK
Sbjct: 361 YTIVISALCK 370



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 105/250 (42%), Gaps = 11/250 (4%)

Query: 34  ALYLRRAQLIDSIRLAVRSNS-----SNSLSSLLNDRLLDPFIVTHALRSAPNADSALSI 88
           AL +++   ++ I  A+  +       N L+S+  D  L+P  V   L    +A +AL  
Sbjct: 145 ALVVQQEDTVNKICKAIEEDQWECLQDNFLNSMAQD--LNPDAVVKVLNLQTDAQNALRF 202

Query: 89  MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS 148
            +       + HN      +  +L +++   EL++L+  + +           + +  Y 
Sbjct: 203 FQWADKQEGYDHNTDAYFTMIDILGRAKMFTELQSLLQKMQTQGREITRSMLHSFVMSYG 262

Query: 149 TSGDLELVLSTWN---EYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP 205
            SG  +  L  +N   E      L+ T +YN V+    K  K   A   F Q+I+ G   
Sbjct: 263 RSGRFKESLEAFNLMKEMGYEPGLIDT-AYNSVLVSLVKNKKLDMAENLFAQMINNGVSC 321

Query: 206 NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL 265
           N+ TYT MI+      K++ A+++   +           Y I++      +  ++A  +L
Sbjct: 322 NNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVL 381

Query: 266 NEMRDDGKFP 275
            +MR++G  P
Sbjct: 382 QKMRENGCEP 391



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 84/181 (46%), Gaps = 8/181 (4%)

Query: 383 FKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFS 442
           FK    A++    + Y+PG     Y    +L  L ++  +++ + L A++ ++G+     
Sbjct: 267 FKESLEAFNLMKEMGYEPGLIDTAY--NSVLVSLVKNKKLDMAENLFAQMINNGVSCNNL 324

Query: 443 TIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAIN 501
           T   +I  + + +K + A+K   D  +    P      ++ Y+ ++  L K K    A  
Sbjct: 325 TYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPD-----VVTYTIVISALCKRKMIEQAYG 379

Query: 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           VL++M  +G  P++ T++ L+         +   +L +++ Q GV P+ Y + +L    C
Sbjct: 380 VLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLC 439

Query: 562 K 562
           K
Sbjct: 440 K 440



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 50/244 (20%), Positives = 104/244 (42%), Gaps = 14/244 (5%)

Query: 66  LLDPFIVTHALRSAPNADS--ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT 123
           +L  F++++  RS    +S  A ++M+ +   P      +  +++   L K+++    + 
Sbjct: 253 MLHSFVMSYG-RSGRFKESLEAFNLMKEMGYEPGLI--DTAYNSVLVSLVKNKKLDMAEN 309

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L   + ++     ++ + +++Q +     +E  +   ++  Q        +Y IV+S   
Sbjct: 310 LFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALC 369

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           K     +A    +++ + G  PN  TY  +I+ L  + + + ALE+ + +    +     
Sbjct: 370 KRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIY 429

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQG-----ANEF 298
            Y IL  G   + R D AK + NE    G  P R     L      G+ +G     A + 
Sbjct: 430 TYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLN----GYCRGSRLIEAMDI 485

Query: 299 LREM 302
           L+EM
Sbjct: 486 LKEM 489



 Score = 45.8 bits (107), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 54/132 (40%), Gaps = 10/132 (7%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN ++       +  EA+E    +   G  PN  TYT++   L  L +LD A E+F+  
Sbjct: 395 TYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEA 454

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
               +K     Y  L+ G+    R  EA  +L EM  +   P       L +    G +Q
Sbjct: 455 LARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQ----GLVQ 510

Query: 294 GANEFLREMLPD 305
           G        LPD
Sbjct: 511 G------NQLPD 516



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 47/230 (20%), Positives = 94/230 (40%), Gaps = 4/230 (1%)

Query: 71  IVTHALRSAPNADSALSIM-EALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDIS 129
           I+TH L      D A  +  EAL        N+ T + L     +  R  E   ++ ++ 
Sbjct: 433 ILTHGLCKLRRLDRAKEMFNEALARG--LKPNRVTYNTLLNGYCRGSRLIEAMDILKEMH 490

Query: 130 SSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF 189
            +      V +  L+Q       L   L   +E   +   ++ ++ NI+    A+ G + 
Sbjct: 491 QNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILARGLARVGNHK 550

Query: 190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV 249
           +A   +R++ D G   ++  Y + I  L   G+++ A  +   +           Y  ++
Sbjct: 551 DASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTYNTMI 610

Query: 250 EGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEF 298
           +GF    R D+A ++LN M ++G  P   +  + ++     G  Q A++ 
Sbjct: 611 KGFCRQGRLDDADAMLNFMIENGIGPDTGSYNILIKEFHNQGRTQDADQL 660


>gi|224065693|ref|XP_002301924.1| predicted protein [Populus trichocarpa]
 gi|222843650|gb|EEE81197.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 102/474 (21%), Positives = 166/474 (35%), Gaps = 98/474 (20%)

Query: 134 LNVSVNFMN-LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV 192
           L V V   N ++  ++ +GDL+  L      +     + T +   V+      G+  EA 
Sbjct: 267 LEVDVQLWNDIIVGFAKAGDLDKALEFLGVVQGSGLSVKTATLVTVIWGLGNCGRTEEAE 326

Query: 193 ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
             F ++ D G  P +R Y  ++   V  G L  A  V S +    +    + Y +L++ +
Sbjct: 327 AIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTYSLLIDAY 386

Query: 253 VGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNV 311
              ER++ A+ +L EM      P        L   ++ G  Q   + LREM         
Sbjct: 387 GNAERWESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREM--------- 437

Query: 312 RYYEDGSDDDEDENDDNNSGVR---IAYGVQLKPWLDPKALANTLDEWSPEVVSLLADA- 367
                            +SGVR   I Y V     +D     N LD        +L++  
Sbjct: 438 ----------------EDSGVRPDRIFYNV----LIDTFGKFNCLDHAMATFDRMLSEGI 477

Query: 368 ---KFVWTTRLV---CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGH 421
                 W T LV   CK  +H ++ E           + GY         M+        
Sbjct: 478 EPDTITWNT-LVDCHCKAGKHDRAEELFEEMM-----EKGYLPCNTTFNIMINSFGDQER 531

Query: 422 VELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLML 481
            + V  L+  +RS G+     T   +ID YG S + D                       
Sbjct: 532 WDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKSGRFD----------------------- 568

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
                           DAI  L++M  +G+ P    ++ L+  +A +G        F  +
Sbjct: 569 ----------------DAIECLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAFWAM 612

Query: 542 RQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSL 583
           R +G++P       LI A+ K            Y+  ++L PD  T   L K+L
Sbjct: 613 RDDGLKPSLLALNSLINAFGKDRRDVEAFVVLQYMKENDLKPDVVTYTTLMKAL 666



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 8/185 (4%)

Query: 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
           +T + +       +R  ++K L+ ++ S   L  +V +  L+  Y  SG  +  +   ++
Sbjct: 517 TTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKSGRFDDAIECLDD 576

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN-LG 221
            +      S+  YN +++ YA+ G + +AV  F  + D+G  P+     + +  L+N  G
Sbjct: 577 MKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAFWAMRDDGLKPS----LLALNSLINAFG 632

Query: 222 KLDSALEVFSALPLMR---IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA 278
           K    +E F  L  M+   +K     Y  L++  + VE+FD+  S+  EM   G  P R 
Sbjct: 633 KDRRDVEAFVVLQYMKENDLKPDVVTYTTLMKALILVEKFDKVPSVYEEMILSGCTPDRK 692

Query: 279 MRVAL 283
            R  L
Sbjct: 693 ARAML 697



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 74/175 (42%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N+ T   L      ++R    + ++ ++ +S     +  F  ++  Y   G+ +      
Sbjct: 375 NEQTYSLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVL 434

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            E            YN+++  + K      A+ TF +++ EG  P++ T+  +++     
Sbjct: 435 REMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKA 494

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           GK D A E+F  +        +  + I++  F   ER+D+ K+LL  MR  G  P
Sbjct: 495 GKHDRAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLP 549



 Score = 38.5 bits (88), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 19/135 (14%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS L+      +R   A  VL+EM  S + P+   FS ++  +  +G+    QK F ++R
Sbjct: 379 YSLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILASYRDKGE---WQKTFQVLR 435

Query: 543 Q---NGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEG 587
           +   +GV PD   + VLI  + K+            + +  + PD  T   L     K G
Sbjct: 436 EMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAG 495

Query: 588 RRKEAAAV-EERCEK 601
           +   A  + EE  EK
Sbjct: 496 KHDRAEELFEEMMEK 510


>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
 gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 95/200 (47%), Gaps = 18/200 (9%)

Query: 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465
           +    ++L+ + R    E V  L  ++   G++    T+ ++I+ +      D     F 
Sbjct: 40  IIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSILINCFCFLHHVDYGFSVF- 98

Query: 466 DDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
             +TL      FK  ++++++L+  + +  +   A  +L+EM   G VPDV T + LM  
Sbjct: 99  -GKTL---KRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCVPDVVTCNSLMRG 154

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPD 572
           +  QG    V+K+F ++   G++PD Y + + I  YCK             +S+  ++P+
Sbjct: 155 YCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPN 214

Query: 573 AATKELLKKSLWKEGRRKEA 592
           A T   L K+L +  R ++A
Sbjct: 215 AVTYNTLIKALCQALRPRDA 234



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 98/221 (44%), Gaps = 20/221 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   DV     ++      G ++ V ++   + S G++    +  + I+ Y   +K D A
Sbjct: 140 GCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEA 199

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           ++ F D+ +  G +      + Y++L++ L +  R  DA  +  +M   G+ PD+  +S 
Sbjct: 200 MELF-DEMSHRGVVPN---AVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYST 255

Query: 521 LMYHFALQG--DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSN 566
           L+  F  QG  DE +V  LF  +++  V+PD  ++ ++I   C+             L  
Sbjct: 256 LLDGFCKQGNLDEMLV--LFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIV 313

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
             L PD  T   L   L +EG   EA  +  + E+   +P 
Sbjct: 314 EGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPG 354



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 88/202 (43%), Gaps = 1/202 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A+ + + + S+     N  T + L   L ++ R  + + L   + +       + +  
Sbjct: 197 DEAMELFDEM-SHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYST 255

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  +   G+L+ +L  + E ++R        Y I+++   ++ K  +A E   ++I EG
Sbjct: 256 LLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEG 315

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  TYT +++ L   G +  AL +F  +        S  Y +L++G +         
Sbjct: 316 LKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQGCLQHNDTSTVV 375

Query: 263 SLLNEMRDDGKFPGRAMRVALE 284
            L++EM D G +     R  L+
Sbjct: 376 QLIHEMADRGFYADAVTRTFLK 397



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 58/128 (45%)

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
           +LM+ Y + G ++ V   ++    +       SY+I ++ Y K  K  EA+E F ++   
Sbjct: 150 SLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHR 209

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G +PN+ TY  +I+ L    +   A  +F  +    +      Y  L++GF      DE 
Sbjct: 210 GVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEM 269

Query: 262 KSLLNEMR 269
             L  EM+
Sbjct: 270 LVLFQEMQ 277



 Score = 45.4 bits (106), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 41/199 (20%), Positives = 78/199 (39%), Gaps = 9/199 (4%)

Query: 81  NADSAL-SIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
           N D AL S    L  NP     Q  +     +L+   R  + +T++      +F  +  N
Sbjct: 20  NLDDALASFNRMLDRNP-----QPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYN 74

Query: 140 FMNL---MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
              L   +  +     ++   S + +  +R        +  ++    + GK   A    +
Sbjct: 75  VCTLSILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLK 134

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           ++   G +P+  T   ++    + GK+D   ++F  +    +K     Y I + G+  VE
Sbjct: 135 EMGLVGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVE 194

Query: 257 RFDEAKSLLNEMRDDGKFP 275
           + DEA  L +EM   G  P
Sbjct: 195 KIDEAMELFDEMSHRGVVP 213



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/116 (22%), Positives = 55/116 (47%), Gaps = 12/116 (10%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +++Y+ ++  + + ++  DA  VL  +I  G+ PDV T++ L+     +G      +LF 
Sbjct: 285 LVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFR 344

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSL 583
            + ++G  P +  + VL+Q   ++            +++     DA T+  LK  L
Sbjct: 345 KMEEDGCMPGSCSYNVLLQGCLQHNDTSTVVQLIHEMADRGFYADAVTRTFLKDFL 400


>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
 gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
          Length = 538

 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/389 (21%), Positives = 145/389 (37%), Gaps = 62/389 (15%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y I+++   ++ K   A E F+++   G  PN  TY  +I+HL   G++D AL V    
Sbjct: 125 TYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQ 184

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
             + +         +V G     R D+A   + EMR  G  P            E+ +  
Sbjct: 185 RSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRP-----------NEVTYSN 233

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTL 353
             + F +    D+ I   R++E      E++     S    AY      +LD    A  L
Sbjct: 234 LVHGFRQHGELDRVI---RFFE------EEKARKGGSLEAAAY----PGYLDALCKAGYL 280

Query: 354 DEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKML 413
           D     V  L                                   Q G   DV     ++
Sbjct: 281 DRARKSVEEL----------------------------------RQSGVVPDVVTYSMLI 306

Query: 414 TILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGP 473
              AR G  +    L+  +R +G++    T   +I+     +K   A +          P
Sbjct: 307 NTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSP 366

Query: 474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
            +    ++ Y+S++  L K  +  +   V E M+ S   PDV T+S +M   +  G    
Sbjct: 367 PN----VVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDS 422

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
             KLF +++ +   PDA  + ++I + C+
Sbjct: 423 AVKLFELIKSSREGPDAAAYSMVITSLCR 451



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 112/261 (42%), Gaps = 30/261 (11%)

Query: 378 KVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM 437
           +V+R F+  +         A  PGY          L  L + G+++   + + +LR  G+
Sbjct: 246 RVIRFFEEEKARKGGSLEAAAYPGY----------LDALCKAGYLDRARKSVEELRQSGV 295

Query: 438 RLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
                T  ++I+ +  + + DA+L+   D  R    P      ++ YS+L+  L K ++ 
Sbjct: 296 VPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPD-----VVTYSTLINVLCKERKF 350

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
            DA  +LE M  +G  P+V T++ +M      G    V +++ M+ ++   PD   + ++
Sbjct: 351 QDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSII 410

Query: 557 IQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKI-- 602
           +    K             + +S   PDAA   ++  SL + G+ +EA  +    E    
Sbjct: 411 MNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEEACGMYHGMEVTVA 470

Query: 603 NDVPSLALRGHIWAVSSADLT 623
            D    AL G + A+  A  T
Sbjct: 471 GDNICRALAGLVAALCDAKRT 491



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 5/160 (3%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           + G   D  A   + T L R      V RL   L S G+    +T +L++D    +  A+
Sbjct: 12  EAGAKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMAN 71

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
            AL+   +   +  P      + +Y+ ++  L +  R  DA  VLE+M+   IVP+V T+
Sbjct: 72  QALELVRELSGVYTPT-----VFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTY 126

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           + L+         K+ +++F  +++NG +P+   +  LIQ
Sbjct: 127 TILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQ 166



 Score = 40.0 bits (92), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 45/95 (47%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN VM    K+GK  E    +  ++     P+  TY++++  L   G LDSA+++F  +
Sbjct: 371 TYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELI 430

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
              R    +  Y +++       + +EA  + + M
Sbjct: 431 KSSREGPDAAAYSMVITSLCRAGKLEEACGMYHGM 465



 Score = 39.3 bits (90), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 43/95 (45%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YN +++   +  +  +A +   ++++E  +PN  TYT+++  L    K   A EVF  + 
Sbjct: 91  YNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMK 150

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
               K     Y  L++        DEA  ++ E R
Sbjct: 151 RNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQR 185


>gi|147782978|emb|CAN70810.1| hypothetical protein VITISV_034914 [Vitis vinifera]
          Length = 708

 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 90/205 (43%), Gaps = 1/205 (0%)

Query: 99  SHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLS 158
           S    T   +   L +S R  E   LI D+ +S  L     +  +++    +G +E    
Sbjct: 452 SPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYK 511

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
              E   +       +YN  + V  +  K+ EA+  + ++I+ G +P+  T+ ++I    
Sbjct: 512 FLEEMGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFF 571

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGR 277
            +G+ D A E +  +      R +  Y +++EG     + ++A  LL+E+ + G K P R
Sbjct: 572 EIGEPDGAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDACFLLDEVINKGIKLPYR 631

Query: 278 AMRVALERMQEMGFIQGANEFLREM 302
                L ++  +G +Q  ++    M
Sbjct: 632 KFDCFLMQLSMIGDLQAIHKLSEHM 656



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 110/275 (40%), Gaps = 57/275 (20%)

Query: 372 TTRLVCKVLR--HFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
           TT LV ++L   HF+  + A+ FF W  +Q  Y+H+  A  +M+ IL+   +     R++
Sbjct: 238 TTDLVIEILGKIHFEE-KMAFRFFMWAGHQDCYSHEPRAYNEMIDILSSTKYKVKQFRIV 296

Query: 430 AKL-----RSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-------------- 470
             +     R+D   +P   + +I+  Y  ++K  A L  F   + +              
Sbjct: 297 CDMLDYMKRNDKKSVPVEVLLMILRKY--TEKHLAHLHKFAKKKKIRVKTQPEINALNLL 354

Query: 471 ------CGPISKFKLML------------LYSSLLRTLTKCKRDFDAINVLEEMIFSGIV 512
                 C  +   + M              Y+ L     + +     + VLEEMI  G  
Sbjct: 355 LDALCKCSLVEDAQAMFRRVKNKVKPDANTYNILFFGWCRVRNPSRGMRVLEEMIEMGHT 414

Query: 513 PDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG---VEPDAYMFKVLIQAY--------C 561
           PD  T++  +  F   G      +LF  +R  G     P A  + ++I A         C
Sbjct: 415 PDSFTYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKTYAIMILALVQSDRTEEC 474

Query: 562 ----KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
               K + NS ++PD +T + + + +   G+ +EA
Sbjct: 475 FKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEA 509



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 10/136 (7%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YNI+   + +       +    ++I+ G  P+S TY   I+     G +  A E+F   
Sbjct: 384 TYNILFFGWCRVRNPSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGMVTEATELFE-- 441

Query: 234 PLMRIKR------TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERM 286
             MR K       T+K Y I++   V  +R +E   L+ +M + G  P     +  +E M
Sbjct: 442 -FMRTKGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGM 500

Query: 287 QEMGFIQGANEFLREM 302
              G ++ A +FL EM
Sbjct: 501 CLAGKVEEAYKFLEEM 516



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 10/172 (5%)

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALK 462
           T   YA+  M+  L +    E   +LI  + + G+    ST + +I+   ++ K + A K
Sbjct: 454 TAKTYAI--MILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYK 511

Query: 463 AFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
              +     G       ++ Y+  L  L + K+  +A+ +   MI +G VP V TF+ L+
Sbjct: 512 FLEE----MGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLI 567

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAA 574
             F   G+     + +  + + G   D   + V+I+     L N N M DA 
Sbjct: 568 SMFFEIGEPDGAFETWHEMDKRGCARDTDTYCVMIEG----LFNCNKMEDAC 615



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 5/94 (5%)

Query: 469 TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
           T+  P +K      Y+ ++  L +  R  +   ++++MI SG++PDV T+  ++    L 
Sbjct: 449 TMSSPTAK-----TYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLA 503

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           G  +   K    +   G  PD   +   +   C+
Sbjct: 504 GKVEEAYKFLEEMGNKGYRPDIVTYNCFLDVLCE 537


>gi|225427504|ref|XP_002263624.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Vitis vinifera]
          Length = 709

 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 90/205 (43%), Gaps = 1/205 (0%)

Query: 99  SHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLS 158
           S    T   +   L +S R  E   LI D+ +S  L     +  +++    +G +E    
Sbjct: 479 SPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYK 538

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
              E   +       +YN  + V  +  K+ EA+  + ++I+ G +P+  T+ ++I    
Sbjct: 539 FLEEMGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFF 598

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGR 277
            +G+ D A E +  +      R +  Y +++EG     + ++A  LL+E+ + G K P R
Sbjct: 599 EIGEPDGAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDACFLLDEVVNKGIKLPYR 658

Query: 278 AMRVALERMQEMGFIQGANEFLREM 302
                L ++  +G +Q  ++    M
Sbjct: 659 KFDCFLMQLSMIGDLQAIHKLSEHM 683



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 110/275 (40%), Gaps = 57/275 (20%)

Query: 372 TTRLVCKVLR--HFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
           TT LV ++L   HF+  + A+ FF W  +Q  Y+H+  A  +M+ IL+   +     R++
Sbjct: 265 TTDLVIEILGKIHFEE-KMAFRFFMWAGHQDCYSHEPRAYNEMIDILSSTKYKVKQFRIV 323

Query: 430 AKL-----RSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-------------- 470
             +     R+D   +P   + +I+  Y  ++K  A L  F   + +              
Sbjct: 324 CDMLDYMKRNDKKSVPVEVLLMILRKY--TEKHLAHLHKFAKKKKIRVKTQPEINALNLL 381

Query: 471 ------CGPISKFKLML------------LYSSLLRTLTKCKRDFDAINVLEEMIFSGIV 512
                 C  +   + M              Y+ L     + +     + VLEEMI  G  
Sbjct: 382 LDALCKCSLVEDAQAMFRRVKNKVKPDANTYNILFFGWCRVRNPSRGMRVLEEMIEMGHT 441

Query: 513 PDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG---VEPDAYMFKVLIQAY--------C 561
           PD  T++  +  F   G      +LF  +R  G     P A  + ++I A         C
Sbjct: 442 PDSFTYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKTYAIMILALVQSDRTEEC 501

Query: 562 ----KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
               K + NS ++PD +T + + + +   G+ +EA
Sbjct: 502 FKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEA 536



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 10/136 (7%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YNI+   + +       +    ++I+ G  P+S TY   I+     G +  A E+F   
Sbjct: 411 TYNILFFGWCRVRNPSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGMVTEATELFE-- 468

Query: 234 PLMRIKR------TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERM 286
             MR K       T+K Y I++   V  +R +E   L+ +M + G  P     +  +E M
Sbjct: 469 -FMRTKGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGM 527

Query: 287 QEMGFIQGANEFLREM 302
              G ++ A +FL EM
Sbjct: 528 CLAGKVEEAYKFLEEM 543



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 10/172 (5%)

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALK 462
           T   YA+  M+  L +    E   +LI  + + G+    ST + +I+   ++ K + A K
Sbjct: 481 TAKTYAI--MILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYK 538

Query: 463 AFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
              +     G       ++ Y+  L  L + K+  +A+ +   MI +G VP V TF+ L+
Sbjct: 539 FLEE----MGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLI 594

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAA 574
             F   G+     + +  + + G   D   + V+I+     L N N M DA 
Sbjct: 595 SMFFEIGEPDGAFETWHEMDKRGCARDTDTYCVMIEG----LFNCNKMEDAC 642



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 5/94 (5%)

Query: 469 TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
           T+  P +K      Y+ ++  L +  R  +   ++++MI SG++PDV T+  ++    L 
Sbjct: 476 TMSSPTAK-----TYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLA 530

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           G  +   K    +   G  PD   +   +   C+
Sbjct: 531 GKVEEAYKFLEEMGNKGYRPDIVTYNCFLDVLCE 564


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 4/194 (2%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           A   L IM      PN S    + + L     KS+R +E K L+ ++S       +V + 
Sbjct: 360 AIKVLGIMIGKGCAPNLS----SYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYS 415

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            LMQ     G     L+ + E      L    +Y+I++  + K G   EA++  +++ + 
Sbjct: 416 TLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHER 475

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
              PN   YT++I  +   GKL+ A E+FS L    I+     Y ++++G +     DEA
Sbjct: 476 RIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEA 535

Query: 262 KSLLNEMRDDGKFP 275
                +M DDG  P
Sbjct: 536 YEFFRKMEDDGFLP 549



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 94/210 (44%), Gaps = 24/210 (11%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           + G   + Y    ++     H  ++   +++  +   G     S+  ++I+ Y  SK+ +
Sbjct: 334 EKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMN 393

Query: 459 AALKAFHDDRTLCGPISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
            A       + L   +S+  L    + YS+L++ L +  R  +A+N+ +EM  SG++PD+
Sbjct: 394 EA-------KRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDL 446

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA-------------YCK 562
             +S L+  F   G      KL   + +  ++P+  ++ +LI+              + K
Sbjct: 447 MAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSK 506

Query: 563 YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
            LS   + PD  T  ++ K L KEG   EA
Sbjct: 507 -LSADGIRPDIWTYNVMIKGLLKEGLSDEA 535



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 81/193 (41%), Gaps = 31/193 (16%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G TH+VY+L  ++  L R  HV+    ++ K+   G++    T   +I+      K   A
Sbjct: 126 GVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEA 185

Query: 461 LKAFHD----------------DRTLCG------PISKFKLM---------LLYSSLLRT 489
           +  F++                   LC        +  F+ M         + Y++++ +
Sbjct: 186 VGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDS 245

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
           L K +   +A+  L EM+  GI PDV T++ +++ F   G      +LF  +    V PD
Sbjct: 246 LCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPD 305

Query: 550 AYMFKVLIQAYCK 562
              F +L+   CK
Sbjct: 306 TVTFNILVDGLCK 318



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 6/174 (3%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  ++  + + G L      + E   R  +  T ++NI++    K G   EA      
Sbjct: 272 VTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSET 331

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + ++GA PN+ TY  +++      ++D A++V   +           Y IL+ G+   +R
Sbjct: 332 MTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKR 391

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREM-----LPD 305
            +EAK LL+EM +    P       L + + ++G  + A    +EM     LPD
Sbjct: 392 MNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPD 445



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 89/465 (19%), Positives = 169/465 (36%), Gaps = 97/465 (20%)

Query: 121 LKTLIGDISSSKFLNVSVNFMNLMQW---------YST-------SGDLELVLSTWNEYR 164
             TLI  + +   +  +V   N M W         Y+T       +G+  + +  + +  
Sbjct: 169 FNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKME 228

Query: 165 QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
           Q     +  +YN ++    K     EAVE   +++D G  P+  TY  ++    +LG+L+
Sbjct: 229 QNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLN 288

Query: 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL- 283
            A  +F  +    +   +  + ILV+G        EA+ +   M + G  P      AL 
Sbjct: 289 EATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALM 348

Query: 284 ------ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYG 337
                  +M E      A + L  M+      N+  Y                 + I   
Sbjct: 349 DGYCLHNQMDE------AIKVLGIMIGKGCAPNLSSYN----------------ILINGY 386

Query: 338 VQLKPWLDPKALANTLDE--WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCW 395
            + K   + K L + + E   +P+ V+      +    + +C+V R    P  A + F  
Sbjct: 387 CKSKRMNEAKRLLSEMSEKNLTPDTVT------YSTLMQGLCQVGR----PREALNLFKE 436

Query: 396 VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455
           +    G   D+ A   +L    +HGH++                                
Sbjct: 437 MC-SSGLLPDLMAYSILLDGFCKHGHLD-------------------------------- 463

Query: 456 KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
           +A   LK  H+ R           ++LY+ L+R +    +   A  +  ++   GI PD+
Sbjct: 464 EALKLLKEMHERRIK-------PNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDI 516

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
            T++ ++     +G      + F  +  +G  PD+  + V+IQ +
Sbjct: 517 WTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGF 561



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 51/116 (43%), Gaps = 18/116 (15%)

Query: 493 CKRDF--DAINVLEEMIFSGIVPDVQTFSGLMYHFAL--QGDEKIVQKLFSMVRQNGVEP 548
           CK     +A  V E M   G  P+  T++ LM  + L  Q DE I  K+  ++   G  P
Sbjct: 317 CKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAI--KVLGIMIGKGCAP 374

Query: 549 DAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           +   + +LI  YCK             +S  NL PD  T   L + L + GR +EA
Sbjct: 375 NLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREA 430



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 74/175 (42%)

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
           S  N + +  T   L   L +  R  E   L  ++ SS  L   + +  L+  +   G L
Sbjct: 403 SEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHL 462

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           +  L    E  +R    +   Y I++      GK   A E F ++  +G  P+  TY VM
Sbjct: 463 DEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVM 522

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           I+ L+  G  D A E F  +        S  Y ++++GF+  +    A  L++EM
Sbjct: 523 IKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEM 577



 Score = 38.9 bits (89), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN+++    K G + EA E FR++ D+G +P+S +Y V+I+  +      +A+++   +
Sbjct: 518 TYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEM 577

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDE 260
              R    S  + +L++    +E  DE
Sbjct: 578 VGKRFSADSSTFQMLLD----LESHDE 600


>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
 gi|194700420|gb|ACF84294.1| unknown [Zea mays]
 gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
          Length = 598

 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 164/392 (41%), Gaps = 46/392 (11%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YNI++    K     +A+E    +  EG  PN+ TY V+I+ +   G +D A E+ ++L
Sbjct: 200 TYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSL 259

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA-MRVALERMQEMGFI 292
           P    K  +  Y  +++GF  +ER+ +A  +L+EM  +   P  A + V +  +   G +
Sbjct: 260 PSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENCPPNEATLNVIINTLCRKGLL 319

Query: 293 QGANEFLREMLPDKRIKNVRYY--------EDGSDDDEDE--NDDNNSGVR---IAYGVQ 339
           Q    +L +M       NV  Y        E G+ D   E  ++  + G +   + Y   
Sbjct: 320 QKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTV 379

Query: 340 LKP------WLDPKALANTLDEWS--PEVVSLLADAKFVWTTRLVCKVLRHFKS-PETAW 390
           LK       W D + L   + +    P+  +      F     L+ +    FK  PE   
Sbjct: 380 LKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEK-- 437

Query: 391 HFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFST---IRLI 447
                     G   +      ++  L + G +E    L+ ++ + G    F+T    R++
Sbjct: 438 ----------GCNPNSTTYSTIIGGLTKAGKMEQALELLNEMANKG----FNTDKMYRVL 483

Query: 448 IDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMI 507
            +      K +  ++  H  +     IS     +LY+++L  L +  +   AI+VL +M+
Sbjct: 484 TESLNKEDKIEEVVQVVHKLQD--SGIS--PQTVLYNTVLLGLCRNGKTDYAIDVLADMV 539

Query: 508 FSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
             G +PD  T+  L+     +G  K  ++L S
Sbjct: 540 SCGCMPDESTYIILIEGLFYEGYSKEARELLS 571



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 60/111 (54%), Gaps = 1/111 (0%)

Query: 165 QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
           Q  +L    ++N ++S + + G   +A E F+Q+ ++G  PNS TY+ +I  L   GK++
Sbjct: 401 QNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKME 460

Query: 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            ALE+ + +       T K Y +L E     ++ +E   ++++++D G  P
Sbjct: 461 QALELLNEMANKGFN-TDKMYRVLTESLNKEDKIEEVVQVVHKLQDSGISP 510



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 36/192 (18%), Positives = 75/192 (39%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
           N   N++TL+ +   L +     ++   +  +S        V +  ++      G+++  
Sbjct: 298 NCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSA 357

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           L   +  +         +YN V+       +  +A E   ++     +P++ T+  +I  
Sbjct: 358 LELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISF 417

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
               G +  A EVF  +P       S  Y  ++ G     + ++A  LLNEM + G    
Sbjct: 418 WCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELLNEMANKGFNTD 477

Query: 277 RAMRVALERMQE 288
           +  RV  E + +
Sbjct: 478 KMYRVLTESLNK 489



 Score = 43.5 bits (101), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 40/80 (50%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           ++ L+  L +  R  DA+ VL+ M+  G  PDV T++ L+         +   +L   +R
Sbjct: 166 HNPLIHALCERGRVADALVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMR 225

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
             G EP+   + V+I A C+
Sbjct: 226 AEGCEPNNVTYNVIIDAMCR 245



 Score = 42.0 bits (97), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 1/132 (0%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           S  +  ++   + +G +E  L   NE   +    + + Y ++     K  K  E V+   
Sbjct: 443 STTYSTIIGGLTKAGKMEQALELLNEMANKG-FNTDKMYRVLTESLNKEDKIEEVVQVVH 501

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           ++ D G  P +  Y  ++  L   GK D A++V + +           Y+IL+EG     
Sbjct: 502 KLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDESTYIILIEGLFYEG 561

Query: 257 RFDEAKSLLNEM 268
              EA+ LL+ +
Sbjct: 562 YSKEARELLSRL 573



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 89/214 (41%), Gaps = 37/214 (17%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP-FSTIRLIIDFYGISKKADA 459
           G   D+     +L  L      E  + L+ K+ S   RLP  ST   II F+    +   
Sbjct: 368 GCKPDIVTYNTVLKGLCSADRWEDAEELMIKM-SQNDRLPDNSTFNTIISFWC---QKGL 423

Query: 460 ALKAFHDDRTL----CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
            L+AF   + +    C P S       YS+++  LTK  +   A+ +L EM   G   D 
Sbjct: 424 ILQAFEVFKQMPEKGCNPNST-----TYSTIIGGLTKAGKMEQALELLNEMANKGFNTDK 478

Query: 516 QTFSGLMYHF---ALQGDEKI--VQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------- 563
                 MY     +L  ++KI  V ++   ++ +G+ P   ++  ++   C+        
Sbjct: 479 ------MYRVLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTDYAI 532

Query: 564 -----LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                + +   MPD +T  +L + L+ EG  KEA
Sbjct: 533 DVLADMVSCGCMPDESTYIILIEGLFYEGYSKEA 566



 Score = 39.3 bits (90), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 3/150 (2%)

Query: 86  LSIMEALKSNP--NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL 143
           L   E  K  P    + N +T   +   L K+ +  +   L+ ++++  F N    +  L
Sbjct: 425 LQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELLNEMANKGF-NTDKMYRVL 483

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
            +  +    +E V+   ++ +       T  YN V+    + GK   A++    ++  G 
Sbjct: 484 TESLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGC 543

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +P+  TY ++IE L   G    A E+ S L
Sbjct: 544 MPDESTYIILIEGLFYEGYSKEARELLSRL 573


>gi|356498649|ref|XP_003518162.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g06400, mitochondrial-like [Glycine max]
          Length = 1034

 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 104/229 (45%), Gaps = 20/229 (8%)

Query: 381 RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP 440
           R FK P+ A   F W+  + G++H       ML I        LV +L+ ++   G++  
Sbjct: 165 RCFKVPQLALRVFNWLKLKDGFSHTTRTYNTMLHIAREAKEFGLVKKLVEEMDECGIQKD 224

Query: 441 FSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKC-KRDFD 498
            +T  +II+ YG ++K   AL AF +  R  C P +     + Y +++ +L    KRD  
Sbjct: 225 VNTWTIIINHYGKARKISEALLAFENMKRCGCEPDA-----VSYGAIICSLCSAGKRDI- 278

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A+    EM+   +V DV+ +  +M   A  GD   V  L + + +  V P+  +   +++
Sbjct: 279 AMEFYNEMVRKDMVLDVRLYKMVMNCMARSGDIAAVSLLGNDMIRLSVMPEKCVHGCMLK 338

Query: 559 AYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
           ++C            + L + +L  +    E L + L K GR  +A  +
Sbjct: 339 SFCISGSIEEALELIRELKSKDLDLEPENYETLVRGLCKAGRITDALEI 387



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 74/164 (45%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L ++ +  E   L  ++   KF+   + F +++      G LE  L+  +  +Q     +
Sbjct: 832 LCRAGKVEEALALHEEVGEEKFIIDQLTFGSIVHGLLRKGRLEEALAKVDVMKQNGITPT 891

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
              +  ++  + K  +  +A+ETF +++  G  P   TY+ +I   +N+G+   A ++F 
Sbjct: 892 IHVFTSLIVHFFKEKQVEKAIETFEEMLHSGYEPTIVTYSALIRGYMNVGRPIDAWDIFY 951

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            + L       K Y + +     V + +E   L++EM D G  P
Sbjct: 952 RMKLKGPFPDFKTYSMFLTCLCKVGKSEEGMRLISEMLDSGIVP 995



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 7/161 (4%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           GY  D   +E  L  L   G V    R    L++ G  +P S   L I     + K + A
Sbjct: 783 GYVPDKELIETYLGCLCEVGRVLDARRCTDSLQNFGYTVPLS-YSLFIRALCRAGKVEEA 841

Query: 461 LKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           L A H++    G   KF +  L + S++  L +  R  +A+  ++ M  +GI P +  F+
Sbjct: 842 L-ALHEE---VGE-EKFIIDQLTFGSIVHGLLRKGRLEEALAKVDVMKQNGITPTIHVFT 896

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
            L+ HF  +   +   + F  +  +G EP    +  LI+ Y
Sbjct: 897 SLIVHFFKEKQVEKAIETFEEMLHSGYEPTIVTYSALIRGY 937



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 1/133 (0%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           +++ +  SG +E  L    E + +   L  E+Y  ++    K G+  +A+E    ++   
Sbjct: 336 MLKSFCISGSIEEALELIRELKSKDLDLEPENYETLVRGLCKAGRITDALEIV-DIMKRR 394

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            + + R + ++I   +    +D ALEVF  +       T   Y  L+     ++R++EA 
Sbjct: 395 DMVDGRVHGIIINGYLGRNDVDRALEVFQCMKESGCVPTISTYTELMLHLFRLDRYEEAC 454

Query: 263 SLLNEMRDDGKFP 275
            L +EM   G  P
Sbjct: 455 MLYDEMLGKGIKP 467


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 108/498 (21%), Positives = 197/498 (39%), Gaps = 56/498 (11%)

Query: 69  PFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT 123
           P IVT+     A  S    + A  +M A+ S   FS    T + +   L K  +    K 
Sbjct: 258 PDIVTYNTLISAYSSQGLMEEAFELMHAMPSK-GFSPGVYTYNTVINGLCKHGKYERAKE 316

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           +  ++  S     S  + +L+      GD     + +++ R R  +     ++ +MS++ 
Sbjct: 317 VFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFT 376

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           ++G   +A+  F  V + G IP++  YT++I+     G +  A+ + + +          
Sbjct: 377 RSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVV 436

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREM 302
            Y  ++ G    +   EA  L NEM + G FP    + + ++   ++G +Q A E  ++M
Sbjct: 437 TYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKM 496

Query: 303 LPDKRIK-NVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLD--PKALANTLDEWSPE 359
             +KRIK +V  Y    D      D + +          + W D   K +  T     P 
Sbjct: 497 -KEKRIKLDVVTYNTLLDGFGKVGDIDTAK---------EIWADMVSKEILPT-----PI 541

Query: 360 VVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH 419
             S+L +A        +C    H       W      + +P     V     M+    R 
Sbjct: 542 SFSILVNA--------LCSK-GHLSEAFRVWDEMISKSIKP----TVMICNSMIKGYCRS 588

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL 479
           G+    +  + K+ S+G      +   +I  YG  K+ + + KAF       G + K + 
Sbjct: 589 GNASDGEIFLEKMISEGFVPDCISYNTLI--YGFVKEENMS-KAF-------GLVKKMEE 638

Query: 480 --------MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
                   +  Y+S+L    +  +  +A  VL +MI  G+ PD  T++ L+  F  Q + 
Sbjct: 639 KQGGLVPDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDNL 698

Query: 532 KIVQKLFSMVRQNGVEPD 549
               +    + Q G  PD
Sbjct: 699 TEAFRFHDEMLQRGFSPD 716



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 84/210 (40%), Gaps = 37/210 (17%)

Query: 389 AWHFFCWVAYQ----PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI 444
            W    W  YQ     G   +VY L  M+  L + G +E V   +++++  G+     T 
Sbjct: 204 GWVELAWRIYQEISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTY 263

Query: 445 RLIIDFYGISKKADAALKAFHDDRT----------------LCGPISKFKLMLLYSSLLR 488
             +I  Y      + A +  H   +                LC      +   +++ +LR
Sbjct: 264 NTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLR 323

Query: 489 T-------------LTKCKRDFDAI---NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
           +             +  CK+  DA+   N+  +M    +VPD+  FS +M  F   G+  
Sbjct: 324 SGLSPDSTTYRSLLMEACKKG-DAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLD 382

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
                F+ V++ G+ PD  ++ +LIQ YC+
Sbjct: 383 KALMYFNSVKEAGLIPDNVIYTILIQGYCR 412



 Score = 46.2 bits (108), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 109/558 (19%), Positives = 210/558 (37%), Gaps = 108/558 (19%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALS--IMEALKSN-PNF 98
           L++ I  +++  +SN  + L+    L+P  V   L    N D +L    ++ L  N PNF
Sbjct: 44  LVEKICFSLKQGNSNVRNHLIR---LNPLAVVEVLYRCRN-DLSLGQRFVDQLGFNFPNF 99

Query: 99  SHNQSTLHALATVLAKSQRNHELKTLI------GDISSSKFLNVSVNFMNLMQWYSTSGD 152
            H   +L A+  +L +S R  + ++ +        +S  + +N      +L+  YS  G 
Sbjct: 100 KHTSLSLSAMIHILVRSGRLSDAQSCVLRMIRRSGVSRVEIVN------SLVSTYSNCGS 153

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
            + V                  +++++  + +  K  EA E F  +  +G   +      
Sbjct: 154 NDSV------------------FDLLIRTFVQARKLREAYEAFTLLRSKGYTVSIDACNA 195

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +I  LV +G ++ A  ++       I R+           VGV  +     ++N +  DG
Sbjct: 196 LIGSLVRIGWVELAWRIYQ-----EISRSG----------VGVNVY-TLNIMVNALCKDG 239

Query: 273 KFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGV 332
           K     +   L  +QE G           + PD    N       S    +E        
Sbjct: 240 KM--EKVGTFLSEVQEKG-----------VYPDIVTYNTLISAYSSQGLMEE-------- 278

Query: 333 RIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHF 392
                 +L   +  K  +  +  ++  +  L    K+     +  ++LR   SP++  + 
Sbjct: 279 ----AFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTY- 333

Query: 393 FCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYG 452
                              +L    + G     + + + +RS  +         ++  + 
Sbjct: 334 -----------------RSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFT 376

Query: 453 ISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV 512
            S   D AL  F+  +   G I      ++Y+ L++   +     +A+N+  EM+  G  
Sbjct: 377 RSGNLDKALMYFNSVKE-AGLIPD---NVIYTILIQGYCRKGMISEAMNLRNEMLQQGCA 432

Query: 513 PDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPD 572
            DV T++ +++    +       KLF+ + + G+ PD+Y   +LI  +CK  +  N M  
Sbjct: 433 MDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAM-- 490

Query: 573 AATKELLKKSLWKEGRRK 590
               EL KK   KE R K
Sbjct: 491 ----ELFKK--MKEKRIK 502



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 41/198 (20%), Positives = 82/198 (41%), Gaps = 39/198 (19%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D Y L  ++    + G+++    L  K++   ++L   T   ++D +G     D A
Sbjct: 465 GLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTA 524

Query: 461 LKAFHD---DRTLCGPIS----------------KFKL------------MLLYSSLLRT 489
            + + D      L  PIS                 F++            +++ +S+++ 
Sbjct: 525 KEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKG 584

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV-----RQN 544
             +     D    LE+MI  G VPD  +++ L+Y F     E+ + K F +V     +Q 
Sbjct: 585 YCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFV---KEENMSKAFGLVKKMEEKQG 641

Query: 545 GVEPDAYMFKVLIQAYCK 562
           G+ PD + +  ++  +C+
Sbjct: 642 GLVPDVFTYNSILHGFCR 659


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 95/488 (19%), Positives = 187/488 (38%), Gaps = 47/488 (9%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           +++  L+     SG+  + +  + +  Q     +  +YN ++    K     +A++   +
Sbjct: 199 ISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSE 258

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++  G  P++ TY  ++  L  LG+L+ A  +F  +     K     Y I+++       
Sbjct: 259 MVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRL 318

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVA-LERMQEMGFIQGANEFLREM-----LPDKRIKNV 311
            ++A   L+EM D G  P        L  +  +G +  A    ++M      PD    N 
Sbjct: 319 VNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNT 378

Query: 312 --------RYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWS---PEV 360
                   R   D  +   +  D       + Y   L  + +       LDE +    E+
Sbjct: 379 IIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCN----LGQLDEATQLFKEM 434

Query: 361 VSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHG 420
           V        +  + LV  + +     E  W F      + G   ++Y    ++       
Sbjct: 435 VGRNVMPNTLTFSILVDGLCQEGMVSEARWVF--ETMTEKGVEPNIYTYNALMNGYCLRC 492

Query: 421 HVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM 480
            +    ++   +   G      +  ++I+ Y  S++ D A       + L   +S  KL 
Sbjct: 493 KMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKA-------KALLTQMSVKKLT 545

Query: 481 ---LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL 537
              + Y+++++ L    R  DA  + ++M  SG++P + T+S L+      G      KL
Sbjct: 546 PNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKL 605

Query: 538 FSMVRQNGVEPDAYMFKVLIQA-------------YCKYLSNSNLMPDAATKELLKKSLW 584
           F  +++  +EPD  ++ +LI+              + K LS   + P   T  ++ K L 
Sbjct: 606 FKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSK-LSADGIQPPGRTYNVMIKGLL 664

Query: 585 KEGRRKEA 592
           KEG   EA
Sbjct: 665 KEGLSDEA 672



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 72/133 (54%), Gaps = 3/133 (2%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           +T +YN +M      G+  +A E F+++   G +P   TY++++  L   G LD AL++F
Sbjct: 547 NTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLF 606

Query: 231 SALPLMRIKRTSKQYLILVEG-FVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQE 288
            ++   +++     Y IL+EG F+G  + + AK L +++  DG + PGR   V ++ + +
Sbjct: 607 KSMKEKKLEPDIILYTILIEGMFIG-GKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLK 665

Query: 289 MGFIQGANEFLRE 301
            G    A E  R+
Sbjct: 666 EGLSDEAYELFRK 678



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 103/252 (40%), Gaps = 43/252 (17%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G TH VY+L  ++  L R  HV+    +  K+   G++    T   +I+      K   A
Sbjct: 123 GVTHTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVA 182

Query: 461 LKAFHD----------------DRTLCG------PISKFKLM---------LLYSSLLRT 489
           ++ +++                   LC        +  FK M         + Y++++ +
Sbjct: 183 VELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDS 242

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
           L K +   DA++ L EM+  GI PD  T++ +++     G      +LF  + QNG +PD
Sbjct: 243 LCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPD 302

Query: 550 AYMFKVLIQAYCK---------YLS---NSNLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
              + ++I +  K         +LS   +  + PD  T   +   L   G+  EA  + +
Sbjct: 303 VVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFK 362

Query: 598 RCEKINDVPSLA 609
           + E+    P + 
Sbjct: 363 KMEQKGCKPDVV 374



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 106/562 (18%), Positives = 201/562 (35%), Gaps = 83/562 (14%)

Query: 93  KSNPNFSHNQSTL----HALATVLAKSQRNH-----ELKTLIGDISSSKFLNVSVNFMNL 143
           K N  F+ N S       ALA+    ++ N      E    +G I+  K  +  V   N 
Sbjct: 59  KKNGGFASNSSNTISVDDALASFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQ 118

Query: 144 MQWYSTS----------------GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           M  +  +                  ++  +S W +  +        ++  +++     GK
Sbjct: 119 MDLFGVTHTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGK 178

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
              AVE + +++  G  P+  +Y  +I  L N G  + A+ VF  +     K     Y  
Sbjct: 179 IKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNT 238

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREMLPDK 306
           +++        ++A   L+EM   G  P        +  +  +G +  A    + M    
Sbjct: 239 IIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRM---- 294

Query: 307 RIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLAD 366
                   ++G   D            + Y + +      + + +  D  S  V   +  
Sbjct: 295 -------EQNGCKPD-----------VVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPP 336

Query: 367 AKFVWTTRL--VC------KVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILAR 418
               +TT L  +C      + +R FK  E           Q G   DV A   ++  L +
Sbjct: 337 DVVTYTTILHGLCYLGQLNEAIRLFKKME-----------QKGCKPDVVAYNTIIDSLCK 385

Query: 419 HGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFK 478
              V      ++++   G+     T   I+  +    + D A + F   + + G  +   
Sbjct: 386 DRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLF---KEMVGR-NVMP 441

Query: 479 LMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF 538
             L +S L+  L +     +A  V E M   G+ P++ T++ LM  + L+      +K+F
Sbjct: 442 NTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVF 501

Query: 539 SMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKE 586
            ++   G  PD + + +LI  YC              +S   L P+  T   + K L   
Sbjct: 502 EIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYV 561

Query: 587 GRRKEAAAVEERCEKINDVPSL 608
           GR  +A  + ++      +P+L
Sbjct: 562 GRLLDAQELFKKMCSSGMLPTL 583



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/231 (18%), Positives = 94/231 (40%), Gaps = 2/231 (0%)

Query: 74  HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKF 133
           + L ++ N + A+ + + ++ N     N  T + +   L K +  ++    + ++     
Sbjct: 206 NGLCNSGNTNMAVHVFKKMEQN-GCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGI 264

Query: 134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE 193
              ++ + +++      G L      +    Q        +YNI++    K     +A +
Sbjct: 265 PPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAAD 324

Query: 194 TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
              +++D+G  P+  TYT ++  L  LG+L+ A+ +F  +     K     Y  +++   
Sbjct: 325 FLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLC 384

Query: 254 GVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREML 303
                ++A   L+EM D G  P        L     +G +  A +  +EM+
Sbjct: 385 KDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMV 435



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 72/153 (47%)

Query: 113 AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
             S+R  + K L+  +S  K    +V +  +M+     G L      + +      L + 
Sbjct: 524 CNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTL 583

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            +Y+I+++   K G   EA++ F+ + ++   P+   YT++IE +   GKL+ A  +FS 
Sbjct: 584 MTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSK 643

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL 265
           L    I+   + Y ++++G +     DEA  L 
Sbjct: 644 LSADGIQPPGRTYNVMIKGLLKEGLSDEAYELF 676


>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 616

 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/416 (19%), Positives = 154/416 (37%), Gaps = 83/416 (19%)

Query: 193 ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
           E   Q+ + G  P+ R Y  +I+ +   G  + A ++ S +P   +K     Y  +++G 
Sbjct: 244 EALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGL 303

Query: 253 VGVERFDEAKSLLNEM-RDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNV 311
              ER++EA+ LL EM ++D         + ++   + G +    E L +ML    I +V
Sbjct: 304 CSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDV 363

Query: 312 RYYEDGSDDDEDEN--DDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF 369
             Y    +    E   D+    ++       KP        NT+               +
Sbjct: 364 ITYTTVINGFCKEGLVDEAVMLLKNMSACGCKP--------NTI--------------SY 401

Query: 370 VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
               + +C+  R   + E   H       Q G   +      ++  + + G  E    L+
Sbjct: 402 TIVLKGLCRAERWVDAQELISHMI-----QQGCLPNPVTFNTLINFMCKKGLAEQAIELL 456

Query: 430 AKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRT 489
            ++  +G      +   +ID  G + K + AL+                           
Sbjct: 457 KQMLVNGCSPDLISYSTVIDGLGKAGKTEEALE--------------------------- 489

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG-DEKIVQKLFSMVRQNGVEP 548
                       +L  MI  GI P+   +S +    + +G  +KI+Q +F  ++   V  
Sbjct: 490 ------------LLNVMINKGITPNTIIYSSMASALSREGRTDKIIQ-MFDSIQDATVRS 536

Query: 549 DAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           DA ++  +I + CK            Y+ ++  MP+ +T  +L + L  EG  +EA
Sbjct: 537 DAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREA 592



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 1/131 (0%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++NI++  + + G     +E   Q+++ G IP+  TYT +I      G +D A+ +   +
Sbjct: 330 TFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNM 389

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
                K  +  Y I+++G    ER+ +A+ L++ M   G  P        +  M + G  
Sbjct: 390 SACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLA 449

Query: 293 QGANEFLREML 303
           + A E L++ML
Sbjct: 450 EQAIELLKQML 460



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/229 (20%), Positives = 89/229 (38%), Gaps = 7/229 (3%)

Query: 89  MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS 148
           M A    PN       L  L     +++R  + + LI  +     L   V F  L+ +  
Sbjct: 389 MSACGCKPNTISYTIVLKGLC----RAERWVDAQELISHMIQQGCLPNPVTFNTLINFMC 444

Query: 149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSR 208
             G  E  +    +           SY+ V+    K GK  EA+E    +I++G  PN+ 
Sbjct: 445 KKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTI 504

Query: 209 TYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
            Y+ M   L   G+ D  +++F ++    ++  +  Y  ++         D A      M
Sbjct: 505 IYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYM 564

Query: 269 RDDGKFPGRAMRVALER-MQEMGFIQGANEFLREMLPDKRIKN--VRYY 314
             +G  P  +    L R +   G ++ A + L E+   + ++   VR++
Sbjct: 565 VSNGCMPNESTYTILIRGLASEGLVREAQDLLSELCSRRAVRKHLVRHF 613


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 83/169 (49%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T ++L   L K +R+ E   +   I++       +++  L+  Y+T G    + + ++  
Sbjct: 379 TFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSM 438

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
                +  +  +NI+++ +AK G   EA+  F ++  +G  PN  TY  +I  L  +G+L
Sbjct: 439 TDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRL 498

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
             A+E  S +  + +K  +  Y  L++GF       +AK L++EM D G
Sbjct: 499 ADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQG 547



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 86/446 (19%), Positives = 180/446 (40%), Gaps = 36/446 (8%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SY+I++  YA  G+  +    F  + D G + +S  + ++I      G +D AL +F+ +
Sbjct: 414 SYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEM 473

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFI 292
               +      Y  ++     + R  +A   L++M   G  P   +  +L +     G +
Sbjct: 474 RGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDL 533

Query: 293 QGANEFLREMLPDKRIK--NVRYY----EDGSDDDEDENDDNNSGVRIAYG-----VQLK 341
             A E + EM+ D+ I   N+ ++        ++    N  +   + I  G         
Sbjct: 534 IKAKELVSEMM-DQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFN 592

Query: 342 PWLDPKALANTLDEWSP---EVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAY 398
             +D   L   +D+       +VS   +   V  + L+    +  +  +    F   +  
Sbjct: 593 SLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCK 652

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           +   T   Y+L  +L  L R G      ++  ++   G  +  ST  +I+     +   D
Sbjct: 653 RVKPTTVTYSL--VLDGLFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQGLCRNNCTD 710

Query: 459 AALKAFHDDRTLCGPIS-KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
            A+  FH      G ++ KF++ +L ++++  L K KR  +A ++   +  SG+VP+  T
Sbjct: 711 EAITLFHK----LGAMNLKFEIAIL-NTMIHALYKVKRREEAHDLFASVSASGLVPNAST 765

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA------------YCKYLS 565
           +  ++ +   +G  +    +FS + + G  P + +   +I+             Y   + 
Sbjct: 766 YGVMIINLLKEGSVEEADIMFSSMEKTGCAPSSRLLNDIIRMLLQKGEIVKAGYYMSKVD 825

Query: 566 NSNLMPDAATKELLKKSLWKEGRRKE 591
            + +  +A+T  LL      +GR +E
Sbjct: 826 GTIISLEASTTSLLISLFASKGRYRE 851



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 105/532 (19%), Positives = 190/532 (35%), Gaps = 59/532 (11%)

Query: 96  PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLEL 155
           PN     S +HAL    A  +    L+ +  +          V +  ++  YS  G  + 
Sbjct: 305 PNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPD----EVTYTAMIHGYSCLGRWKE 360

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
               + E  +   +    ++N +M    K  ++ EA E F  +  +G  P+  +Y++++ 
Sbjct: 361 AAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLH 420

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                G+      +F ++    I   S  + IL+         DEA  +  EMR  G  P
Sbjct: 421 GYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSP 480

Query: 276 GRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRI 334
                   +  +  MG +  A E L +M+      N   Y           D       I
Sbjct: 481 NVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGD------LI 534

Query: 335 AYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFC 394
                +   +D       +  +S  + SL  + + +              + +  ++   
Sbjct: 535 KAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVM--------------NAQDVFNLVI 580

Query: 395 WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS 454
            +  +P    D++    ++      G ++    ++  + S G      T   +I+ Y  S
Sbjct: 581 HIGDRP----DIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKS 636

Query: 455 KKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
            + D  L  F +   LC  +    +   YS +L  L +  R   A  +  EMI SG    
Sbjct: 637 GRIDDGLILFRE--MLCKRVKPTTVT--YSLVLDGLFRAGRTSAAKKMFHEMIESGTAMS 692

Query: 515 VQTFSGLMYHFALQG-------DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY---- 563
           + T     Y   LQG       DE I   LF  +    ++ +  +   +I A  K     
Sbjct: 693 IST-----YTIILQGLCRNNCTDEAIT--LFHKLGAMNLKFEIAILNTMIHALYKVKRRE 745

Query: 564 --------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
                   +S S L+P+A+T  ++  +L KEG  +EA  +    EK    PS
Sbjct: 746 EAHDLFASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTGCAPS 797



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 29/131 (22%)

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHF----ALQGDEKIVQKLFSMVRQNGVEPDAYMFK 554
           A N+  EM+  G+VP+V T++ +++      A+   E +++++F     N ++PD   + 
Sbjct: 291 ACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMF----DNSIQPDEVTYT 346

Query: 555 VLIQAY-C-----------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKI 602
            +I  Y C           K ++   L+PD  T   L  SL K  R KEAA +       
Sbjct: 347 AMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFH----- 401

Query: 603 NDVPSLALRGH 613
               S+A +GH
Sbjct: 402 ----SIATKGH 408



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 69/144 (47%), Gaps = 18/144 (12%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ ++SL+ +L K KR  +A  +   +   G  PD+ ++S L++ +A +G    +  LF 
Sbjct: 377 IVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFH 436

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEG 587
            +  NG+  D++ F +LI A+ K             +    + P+  T   +  +L + G
Sbjct: 437 SMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMG 496

Query: 588 RRKEAAAVEERCEKINDVPSLALR 611
           R  +A       EK++ + S+ L+
Sbjct: 497 RLADAM------EKLSQMISIGLK 514



 Score = 47.0 bits (110), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 112/578 (19%), Positives = 199/578 (34%), Gaps = 99/578 (17%)

Query: 75  ALRSAPNADSALSI----MEALKSNPN-FSHNQSTLHALATVLAKSQRNHELKTLI---- 125
            L  A   D ALS+    M  L   P+ FS+N      + ++   S+    L  L+    
Sbjct: 209 CLCYAKRTDEALSMLLHRMSELGCVPDAFSYNT----VIKSLCGGSRSQEALDMLLRMTK 264

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
           GD  S       V++  ++      G++    + +NE  Q+  + +  +YN ++    K 
Sbjct: 265 GDGCSPDV----VSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKA 320

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL------------ 233
               +A    RQ+ D    P+  TYT MI     LG+   A ++F  +            
Sbjct: 321 RAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTF 380

Query: 234 -----PLMRIKRTSK------------------QYLILVEGFVGVERFDEAKSLLNEMRD 270
                 L + KR+ +                   Y IL+ G+    RF +  +L + M D
Sbjct: 381 NSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTD 440

Query: 271 DGKFP-GRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNN 329
           +G         + +    + G +  A     EM       NV                  
Sbjct: 441 NGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNV------------------ 482

Query: 330 SGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRH---FKSP 386
               + Y   +        LA+ +++ S +++S+      V    L+     H    K+ 
Sbjct: 483 ----VTYATVIAALCRMGRLADAMEKLS-QMISIGLKPNTVVYHSLIQGFCTHGDLIKAK 537

Query: 387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
           E           +P  T        ++  L   G V     +   +   G R    T   
Sbjct: 538 ELVSEMMDQGIPRPNITF----FSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNS 593

Query: 447 IIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
           +ID Y +  K D A     D     G       ++ YS+L+    K  R  D + +  EM
Sbjct: 594 LIDGYCLVGKMDKAFGVL-DAMVSAGTEPD---VVTYSTLINGYFKSGRIDDGLILFREM 649

Query: 507 IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK---- 562
           +   + P   T+S ++      G     +K+F  + ++G       + +++Q  C+    
Sbjct: 650 LCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQGLCRNNCT 709

Query: 563 --------YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                    L   NL  + A    +  +L+K  RR+EA
Sbjct: 710 DEAITLFHKLGAMNLKFEIAILNTMIHALYKVKRREEA 747


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 99/539 (18%), Positives = 208/539 (38%), Gaps = 82/539 (15%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSN-PNFSH 100
           L + + L ++    NSL +LL  RL    +V    +   N       ++++ SN PNF H
Sbjct: 72  LTEKVLLNLKQGKLNSLRNLL-FRLDSVVVVDVLYKCRENLQLGQRFIDSITSNCPNFKH 130

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           +  +  A+  +L +S+R  + + +I  +     ++      +L+  Y   G   LV    
Sbjct: 131 SLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCGSNPLV---- 186

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
                         +++++  Y +  K  E  E FR +  +G   +      ++  LV +
Sbjct: 187 --------------FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKV 232

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR 280
           G +D A E++  +    ++       I++      ++ +  KS L++M + G FP     
Sbjct: 233 GWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTY 292

Query: 281 VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQL 340
             L            N + R+ L ++                                +L
Sbjct: 293 NTL-----------INAYCRQGLLEE------------------------------AFEL 311

Query: 341 KPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAY-- 398
              +  K L   +  ++  +  L    K++    ++ ++L+   SP+TA +    V    
Sbjct: 312 MDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCR 371

Query: 399 ---------------QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFST 443
                            G   D+ +   ++ +L+++G ++   +    +++ G+      
Sbjct: 372 NDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVI 431

Query: 444 IRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVL 503
             ++I  +  +     ALK   D+    G +     ++ Y+++L  L K K   +A  + 
Sbjct: 432 YTILIGGFCRNGVMSEALKV-RDEMLEQGCVLD---VVTYNTILNGLCKEKMLSEADELF 487

Query: 504 EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            EM   G+ PD  TF+ L+  ++  G+      LF M+ Q  ++PD   +  LI  +CK
Sbjct: 488 TEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCK 546



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 6/175 (3%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+  +    ++E V   WN+   R    +  SY I+++ Y   G   EA   + +
Sbjct: 535 VTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDE 594

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++++G      T   +++     G    A E  S + L  I      Y  L+ GF+  E 
Sbjct: 595 MVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEEN 654

Query: 258 FDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREML-----PDK 306
            D A +L+N+M + G  P      V L      G +Q A   + +M+     PD+
Sbjct: 655 MDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDR 709



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/203 (18%), Positives = 85/203 (41%), Gaps = 1/203 (0%)

Query: 81  NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNF 140
           N + A+++ E +    N   +  T + L     K     ++  L  D+ S +     +++
Sbjct: 514 NMNKAVTLFEMMIQR-NLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISY 572

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
             L+  Y   G +      W+E  ++    +  + N ++  Y + G   +A E    ++ 
Sbjct: 573 GILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLL 632

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
           +G +P+  TY  +I   +    +D A  + + +    +      Y +++ GF    R  E
Sbjct: 633 KGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQE 692

Query: 261 AKSLLNEMRDDGKFPGRAMRVAL 283
           A+ ++ +M + G  P R+   +L
Sbjct: 693 AELIMLKMIERGVNPDRSTYTSL 715



 Score = 46.2 bits (108), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 69/162 (42%), Gaps = 1/162 (0%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  +  +G +   L   +E  ++  +L   +YN +++   K     EA E F ++ + G
Sbjct: 435 LIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERG 494

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  T+T +I      G ++ A+ +F  +    +K     Y  L++GF      ++  
Sbjct: 495 VFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVN 554

Query: 263 SLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREML 303
            L N+M     +P   +  + +     MG +  A     EM+
Sbjct: 555 ELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMV 596



 Score = 42.4 bits (98), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 94/245 (38%), Gaps = 45/245 (18%)

Query: 400 PGYTHDVYALEKMLTILARH-------------------GHVELVDRLIAKLRSDGMRLP 440
           P + H + +   M+ IL R                      VE+V+ L+    + G   P
Sbjct: 126 PNFKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCGSN-P 184

Query: 441 FSTIRLIIDFYGISKKADAALKAFH--DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD 498
                L++  Y  ++K     +AF     + LC  I+        +SLL  L K      
Sbjct: 185 L-VFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINAC------NSLLGGLVKVGWVDL 237

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI--VQKLFSMVRQNGVEPDAYMFKVL 556
           A  + +E++ SG+  +V T + ++   AL  ++KI   +   S + + GV PD   +  L
Sbjct: 238 AWEIYQEVVRSGVQVNVYTLNIMIN--ALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTL 295

Query: 557 IQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND 604
           I AYC+             +S   L P   T   +   L K G+   A  V +   KI  
Sbjct: 296 INAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGM 355

Query: 605 VPSLA 609
            P  A
Sbjct: 356 SPDTA 360



 Score = 39.7 bits (91), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 51/113 (45%)

Query: 160 WNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219
           + E  +R       ++  +++ Y+K G   +AV  F  +I     P+  TY  +I+    
Sbjct: 487 FTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCK 546

Query: 220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
             +++   E+++ +   RI      Y IL+ G+  +    EA  L +EM + G
Sbjct: 547 GSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKG 599


>gi|147843358|emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
          Length = 714

 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 125/276 (45%), Gaps = 5/276 (1%)

Query: 31  NKLALYLRRAQLIDSIRLAVRSNSS-NSLSSLLNDRLLDPFIVTHALRSAPNADSALSIM 89
           +KL+L+ R  ++ D+I   VR   S  ++S+ LN  LL     +       + DSA  ++
Sbjct: 209 SKLSLHERVVEMFDAIXPIVREKPSLKAISTCLN--LLVESNQSSITAKNGDIDSAFEVV 266

Query: 90  EALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD-ISSSKFLNVSVNFMNLMQWYS 148
           E +K +     N  T   L   L  S R  E   L  + +S  + L  ++ +  L+  + 
Sbjct: 267 EEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFC 326

Query: 149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSR 208
               ++  L      ++     +  +Y+ +M+ + K G+  EA E F ++   G  P++ 
Sbjct: 327 HGXKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTV 386

Query: 209 TYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
            YT +I      G++D A+E+   +   + +  +  + +++ G     RF+EA  +L  +
Sbjct: 387 GYTTLINFFCRAGRVDEAMELLKDMXENKCRADTVTFNVILGGLCREGRFEEAXGMLERL 446

Query: 269 RDDGKFPGRA-MRVALERMQEMGFIQGANEFLREML 303
             +G +  +A  R+ L  +   G +Q A + +  ML
Sbjct: 447 PYEGVYLNKASYRIVLNSLCREGELQKATQLVGLML 482



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 99/226 (43%), Gaps = 21/226 (9%)

Query: 69  PFIVTHA-----LRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT 123
           P  ++H      ++   +   AL I   +     FSHN +T   +   LAKS++   +  
Sbjct: 125 PKFISHESAINLIKRETDPQRALEIFNRVAEQRGFSHNNATYATILHKLAKSKKFQAIDA 184

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE----YRQRAKLLS-TESYNIV 178
           ++  ++          F+NLM+ +S     E V+  ++      R++  L + +   N++
Sbjct: 185 VLHQMTYETCKFHEGIFLNLMKHFSKLSLHERVVEMFDAIXPIVREKPSLKAISTCLNLL 244

Query: 179 M-----SVYAKTG---KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           +     S+ AK G     FE VE  ++     + PN  TY+ +I  L   G+L  A+E+F
Sbjct: 245 VESNQSSITAKNGDIDSAFEVVEEMKK--SHVSYPNLITYSTLINGLCGSGRLKEAIELF 302

Query: 231 SALPLM-RIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             +    +I   +  Y  L+ GF    + D A  ++  M+ +G  P
Sbjct: 303 EEMVSKDQILPDALTYNALINGFCHGXKVDRALKIMEFMKKNGCNP 348



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 92/201 (45%), Gaps = 22/201 (10%)

Query: 414 TILARHGHVELVDRLIAKLRSDGMRLP-FSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
           +I A++G ++    ++ +++   +  P   T   +I+    S +   A++ F +      
Sbjct: 251 SITAKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEE------ 304

Query: 473 PISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
            +SK +++   L Y++L+       +   A+ ++E M  +G  P+V  +S LM  F  +G
Sbjct: 305 MVSKDQILPDALTYNALINGFCHGXKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEG 364

Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKE 577
             +  +++F  ++  G++PD   +  LI  +C            K +  +    D  T  
Sbjct: 365 RLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMXENKCRADTVTFN 424

Query: 578 LLKKSLWKEGRRKEAAAVEER 598
           ++   L +EGR +EA  + ER
Sbjct: 425 VILGGLCREGRFEEAXGMLER 445


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 116/565 (20%), Positives = 225/565 (39%), Gaps = 68/565 (12%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTL------I 125
           V H L  A   D+   I++ +K + +   N S L  + +  +    N  L+ +       
Sbjct: 95  VLHKLGKAGEFDAMKDILKEMKISLSVIDNDSLLVFIESYASFGLYNEILQFVDAMEVEF 154

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
           G ++++ F N  +N +           L+LV    +    R       ++NI++    + 
Sbjct: 155 GVVANTHFYNFLLNVL------VDGNKLKLVEIAHSNMVSRGIRPDVSTFNILIKALCRA 208

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
            +   A+    ++ D G +P+ +T+T +++  +  G LD A+ V   +       T+   
Sbjct: 209 HQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTV 268

Query: 246 LILVEGFVGVERFDEAKSLLNEMR-DDGKFPGR-AMRVALERMQEMGFIQGANEFLREML 303
            +LV GF    R +EA   + EM   +G FP +    + +  + + G ++ A E +  ML
Sbjct: 269 NVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMML 328

Query: 304 PDKRIKNVRYYEDGSDDDEDENDDNNSGV----RIAYGVQ-LKPWLDPKALANTLDEWSP 358
                       +G D D    +   SG+     +   V+ L   ++     NT+  ++ 
Sbjct: 329 -----------REGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVT-YNT 376

Query: 359 EVVSLLADAKFVWTTRLVCKVLRHFKSPETAW-------------HFFCWVAYQP----G 401
            + +L  + +    T+L   +      P+                H      Y+     G
Sbjct: 377 IISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKG 436

Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL 461
              D +    ++  L   G ++    L+ ++   G      T   +ID +  +K+   A 
Sbjct: 437 CHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAE 496

Query: 462 KAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL 521
           + F D   L G +S+  +   Y++L+  L K +R  +A  ++++MI  G+ PD  T++ L
Sbjct: 497 EIF-DQMELQG-VSRNSVT--YNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSL 552

Query: 522 MYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--------------YLSNS 567
           + +F   GD K    +   +  +G EPD   +  LI   CK               +   
Sbjct: 553 LTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGI 612

Query: 568 NLMPDAATKELLKKSLWKEGRRKEA 592
           NL P A    +  ++L++  R KEA
Sbjct: 613 NLTPHAYNPVI--QALFRRKRSKEA 635



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 91/216 (42%), Gaps = 6/216 (2%)

Query: 67  LDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHEL 121
            DP I T+      L      D A+ ++  +    + S N  T + + + L K  +  E 
Sbjct: 332 FDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIER-DCSPNTVTYNTIISTLCKENQVEEA 390

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
             L   ++    L     + +L+Q    S +  + +  + E + +       +YN+++  
Sbjct: 391 TKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDS 450

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
               GK  EA+   +++   G   N  TY  +I+      ++  A E+F  + L  + R 
Sbjct: 451 LCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRN 510

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR 277
           S  Y  L++G    ER +EA  L+++M  +G  P +
Sbjct: 511 SVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDK 546



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 2/132 (1%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN +++ + K G   +A +  + +  +G  P+  TY  +I  L   G++++A ++   +
Sbjct: 548 TYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTI 607

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER--MQEMGF 291
            +  I  T   Y  +++     +R  EA  L  EM +  + P       + R   Q  G 
Sbjct: 608 QMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGLCQGGGP 667

Query: 292 IQGANEFLREML 303
           I  A +F+ EML
Sbjct: 668 IGEAVDFVMEML 679


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 12/140 (8%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           +S L+  L K  +  DA  V+  MI  G+ PD+ T+S +M  + L+G     +++F+++R
Sbjct: 276 FSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLR 335

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
             G++P+ + + +LI  YCK             +S   L PD  T   +   L + GR  
Sbjct: 336 DKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIG 395

Query: 591 EAAAVEERCEKINDVPSLAL 610
           +A  + +   ++   P + L
Sbjct: 396 DAKKIFDEMLRVGPTPDICL 415



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 93/208 (44%), Gaps = 7/208 (3%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           IV  AL    N D+A++++  +K   N   N  T ++L   L K  +  ++KTL+ ++ +
Sbjct: 208 IVIDALCKDINLDAAINLLNEMKQK-NIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVN 266

Query: 131 SKFLNVSVN---FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
              LN++ N   F  L+      G +E          ++       +Y+ +M  Y   G+
Sbjct: 267 ---LNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQ 323

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
              A   F  + D+G  PN  +Y+++I        L  A+++F  +    +K  +  Y  
Sbjct: 324 VDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYST 383

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           ++ G + V R  +AK + +EM   G  P
Sbjct: 384 ILHGLIEVGRIGDAKKIFDEMLRVGPTP 411



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 114/536 (21%), Positives = 198/536 (36%), Gaps = 71/536 (13%)

Query: 93  KSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD 152
           K++ NF    S L    ++  +  R   +K L   I  SK     +N    M+ YS    
Sbjct: 31  KAHINFDKEVSCLDDAVSLFHRMVR---MKPLPSVIDFSKLFKTMIN----MKHYSA--- 80

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
              V+S + E R     +S    NIV + Y    +   A       +  G   N  T+  
Sbjct: 81  ---VVSLFREMRILGIPISDSILNIVTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNT 137

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSK-QYLILVEGFVGVERFDEAKSLLNEMRDD 271
           ++  L    K+  A+ +F  L   +I   ++  Y  ++ G       ++  SLL  M   
Sbjct: 138 LLGGLFAENKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQG 197

Query: 272 GKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNS 330
              P  R   + ++ + +   +  A   L EM       N+  Y    D           
Sbjct: 198 NTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLID----------- 246

Query: 331 GVRIAYGVQLKPWLDPKALANTLDEWS--PEV--VSLLADAKFVWTTRLVCKVLRHFKSP 386
           G+      +L  W   K L + +   +  P V   S+L D         +CK  +   + 
Sbjct: 247 GL-----CKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDG--------LCKEGKVEDAD 293

Query: 387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
           E   H       + G   D+     ++      G V+   R+   LR  G++    +  +
Sbjct: 294 EVMRHMI-----EKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSI 348

Query: 447 IIDFYGISKKADAALKAFHDDRTLCGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVL 503
           +I+ Y   K    A++ F       G IS+  L    + YS++L  L +  R  DA  + 
Sbjct: 349 LINGYCKKKNLAKAMQLF-------GEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIF 401

Query: 504 EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK- 562
           +EM+  G  PD+   S L++ +   G  +    LFS + +N  + +   + V+I   CK 
Sbjct: 402 DEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKN 461

Query: 563 -----------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
                       L +  L+PD  T  ++     +EG   E   +  + E  N  P+
Sbjct: 462 DRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMED-NGCPA 516


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 101/499 (20%), Positives = 189/499 (37%), Gaps = 84/499 (16%)

Query: 121 LKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS 180
           L+   G+++        V +  ++     S DL   +  + E  +R       +YN ++ 
Sbjct: 21  LEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLID 80

Query: 181 VYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR 240
              K G   EA      +   G +PN  TY+V+I  L  +G++D A E+   +       
Sbjct: 81  SLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDV 140

Query: 241 TSK--QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA---------LERMQEM 289
                 Y   ++G        EA  L+  +RD       ++RV+         ++ + + 
Sbjct: 141 LPNIITYNSFLDGLCKQSMTAEACELMRSLRDG------SLRVSPDTVTFSTLIDGLCKC 194

Query: 290 GFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLD--PK 347
           G I  A     +M+    + NV  Y                   +  G+     ++    
Sbjct: 195 GQIDEACSVFDDMIAGGYVPNVITYN-----------------ALVNGLCKADKMERAHA 237

Query: 348 ALANTLDEW-SPEVV--SLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTH 404
            + + +D+  +P+V+  S+L DA F   +R+           + A      +A + G T 
Sbjct: 238 MIESMVDKGVTPDVITYSVLVDA-FCKASRV-----------DEALELLHGMASR-GCTP 284

Query: 405 DVYALEK-----MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
           +V   +K     ++    + G+ E    L  ++ +  ++    T   +ID  G+ K    
Sbjct: 285 NVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALID--GLCKAGQ- 341

Query: 460 ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
            ++A  D   L G +     ++ Y++L+  L K  R  +A   LEEM+ SG VPD  T+ 
Sbjct: 342 -VEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYG 400

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELL 579
            L+Y            +L S ++  G +PD   + +L+                      
Sbjct: 401 SLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDG-------------------- 440

Query: 580 KKSLWKEGRRKEAAAVEER 598
              LWK G+ ++A  V E 
Sbjct: 441 ---LWKSGKTEQAITVLEE 456



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/279 (20%), Positives = 114/279 (40%), Gaps = 15/279 (5%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKS-- 94
           L++ +  A +   ++++   + D+ + P ++T+     A   A   D AL ++  + S  
Sbjct: 222 LVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRG 281

Query: 95  -NPN-FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD 152
             PN    ++ T + L     K+    +   L  ++ +       + F  L+     +G 
Sbjct: 282 CTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQ 341

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
           +E      +         +  +YN ++    K+G+  EA +   +++  G +P+S TY  
Sbjct: 342 VEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGS 401

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           ++  L    + D AL++ S L        +  Y ILV+G     + ++A ++L EM   G
Sbjct: 402 LVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKG 461

Query: 273 KFPGR-AMRVALERMQEMGFIQGANEFLR-----EMLPD 305
             P           +   G + G  E LR      MLPD
Sbjct: 462 HQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGMLPD 500



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 93/460 (20%), Positives = 165/460 (35%), Gaps = 62/460 (13%)

Query: 175 YNIVMSVYAKTGKNFEAVETFR-QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           YNIV+    + G    A+E FR ++  +G  P   TY  +I  L     L + +E+F  L
Sbjct: 4   YNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEEL 63

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFI 292
                      Y  L++        +EA+ L  +M   G  P      V +  + ++G I
Sbjct: 64  VERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRI 123

Query: 293 QGANEFLR-------EMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLD 345
             A E ++       ++LP+  I     + DG                 A   +L   L 
Sbjct: 124 DEARELIQEMTRKSCDVLPN--IITYNSFLDGLCKQS----------MTAEACELMRSLR 171

Query: 346 PKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHD 405
             +L       SP+ V+          + L+  + +  +  E    F   +A   GY  +
Sbjct: 172 DGSL-----RVSPDTVTF---------STLIDGLCKCGQIDEACSVFDDMIA--GGYVPN 215

Query: 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465
           V     ++  L +   +E    +I  +   G+     T  +++D +  + + D AL+  H
Sbjct: 216 VITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLH 275

Query: 466 DDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
              +  C P       + ++ L+    K      A  + EEM+   + PDV TF  L+  
Sbjct: 276 GMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDG 335

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLW 584
               G  +  + +  ++   GV P+   +  L+   CK                      
Sbjct: 336 LCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCK---------------------- 373

Query: 585 KEGRRKEAAAVEERCEKINDVP-SLALRGHIWAVSSADLT 623
             GR +EA    E       VP S+     ++A+  A  T
Sbjct: 374 -SGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRT 412


>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 833

 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 80/172 (46%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T ++  + L K  ++ E       +++       V +  L+  Y+T G    +L+ +
Sbjct: 331 NIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLF 390

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           N       +     +NIV+  Y K G   E +  F Q+ ++G IP++ TY ++I     +
Sbjct: 391 NSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRM 450

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           G+L  A++ F+ +  M +K     Y  L++GF       +AK L++EM   G
Sbjct: 451 GRLADAMDKFNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRG 502



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 106/540 (19%), Positives = 201/540 (37%), Gaps = 55/540 (10%)

Query: 96  PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLEL 155
           P+     S + AL    A  +    L+ +I    S+ F    V +  ++  YS SG  + 
Sbjct: 260 PDVVTYTSIIDALCKARAMDKAELVLRQMI----SNGFQPNKVTYNCMIHGYSISGQWKE 315

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
               + E   +  + +  + N  MS   K GK+ EA E F  +  +G  PN  TY+V++ 
Sbjct: 316 TAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLH 375

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                G     L +F+++    I    + + I+++ +      DE   +  +M++ G  P
Sbjct: 376 GYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIP 435

Query: 276 GRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRI 334
                 + +     MG +  A +   +M+       +    +G                I
Sbjct: 436 DACTYGIVIAAFSRMGRLADAMDKFNQMIA------MGLKPEG----------------I 473

Query: 335 AYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLV---CKVLRHFKSPETAWH 391
            Y   ++ +     L    +  S  +   +     V+   ++   CK  R  ++ +  + 
Sbjct: 474 VYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIINSLCKEGRVVEAHDI-FD 532

Query: 392 FFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY 451
           F   +  +P    DV     ++      G +E    ++  + S G+     +   +ID Y
Sbjct: 533 FVIHIGERP----DVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDVVSYNTLIDGY 588

Query: 452 GISKKADAALKAFHDDRTLCGPISKF--KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS 509
             + + D  L  F +       +SK      + Y  +L  L    R   A  +  EMI S
Sbjct: 589 CRNGRIDDGLILFGE------MLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIES 642

Query: 510 GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------ 563
           G   D+ T   ++        +     +F  +    V+ +  +   +I A  K       
Sbjct: 643 GTTMDISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMIDAMYKVRKREEA 702

Query: 564 ------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAV 617
                 +S + L+P+A+T  ++ K+L KEG  +EA  +    EK    PS  L  +I  V
Sbjct: 703 KELFDSISATGLVPNASTYGVMIKNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNYIIRV 762



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 29/147 (19%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF----ALQGDEKIVQKLF 538
           Y++++  L +      A N+  EM+  G+VPDV T++ ++       A+   E +++++ 
Sbjct: 230 YNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMI 289

Query: 539 SMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKE 586
           S    NG +P+   +  +I  Y             + +++  LMP+  T      SL K 
Sbjct: 290 S----NGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKH 345

Query: 587 GRRKEAAAVEERCEKINDVPSLALRGH 613
           G+ KEAA   +         S+A +GH
Sbjct: 346 GKSKEAAEFFD---------SMAAKGH 363



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 47/228 (20%), Positives = 98/228 (42%), Gaps = 28/228 (12%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           Q G   DV     ++  L +   ++  + ++ ++ S+G +    T   +I  Y IS +  
Sbjct: 255 QQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQWK 314

Query: 459 AALKAFHDDRTLCGPISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
                F +       ++   LM   +  +S + +L K  +  +A    + M   G  P++
Sbjct: 315 ETAGMFRE-------MTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNL 367

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------Y 563
            T+S L++ +A +G    +  LF+ +  NG+  D  +F ++I AY K             
Sbjct: 368 VTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQ 427

Query: 564 LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALR 611
           +    ++PDA T  ++  +  + GR  +A       +K N + ++ L+
Sbjct: 428 MQEQGVIPDACTYGIVIAAFSRMGRLADAM------DKFNQMIAMGLK 469



 Score = 42.7 bits (99), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMI--FSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           Y+++++TL +  R   A+++L  M+    G  P+V T++ +++    +G+      LF  
Sbjct: 193 YNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHGLFREGEVSKACNLFHE 252

Query: 541 VRQNGVEPDAYMFKVLIQAYCK 562
           + Q GV PD   +  +I A CK
Sbjct: 253 MMQQGVVPDVVTYTSIIDALCK 274


>gi|356544600|ref|XP_003540737.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
           mitochondrial-like [Glycine max]
          Length = 449

 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 1/186 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A++++E +      + N+ T   L   L   ++  E K L+ D++        VNF  
Sbjct: 227 DKAMALLEDMGQKGKHA-NEVTYALLMEGLCSVEKTEEAKKLMFDMAYRGCKAQPVNFGV 285

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           LM      G +E   S  +E ++R       +YNI+++   K GK  EA +   ++   G
Sbjct: 286 LMNDLGKRGKVEEAKSLLHEMKKRRLKPDVVTYNILINYLCKEGKAMEAYKVLLEMQIGG 345

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +PN+ TY ++++ L  +G  + AL V +A+   R    S+ +  +V G +     D + 
Sbjct: 346 CVPNAATYRMVVDGLCQIGDFEVALSVLNAMLTSRHCPRSETFNCMVVGLLKSGNIDGSC 405

Query: 263 SLLNEM 268
            +L EM
Sbjct: 406 FVLEEM 411



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 93/205 (45%), Gaps = 7/205 (3%)

Query: 69  PFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDI 128
           PF+    +++  + + ALS+    K    F H   +  AL   LA+S+    ++T++  +
Sbjct: 44  PFVTE--VKTVEDPEEALSLFHRYKEQ-GFRHYYPSYAALLYKLARSRMFDAVETILAHM 100

Query: 129 SSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN 188
             ++       F+ L Q Y     +EL    +N   Q     + +S+N +++V     + 
Sbjct: 101 KDTEMQCRESVFIALFQHYGPEKAVEL----FNRMPQFNCTRTIQSFNALLNVLIDNDRF 156

Query: 189 FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
            EA + F +  + G  PN+ T+ +M++  +  G+   A EVF  +   R++ +   Y  L
Sbjct: 157 DEANDIFGKSYEMGFRPNTVTFNIMVKGRLAKGEWGKACEVFDEMLQKRVQPSVVTYNSL 216

Query: 249 VEGFVGVERFDEAKSLLNEMRDDGK 273
           +         D+A +LL +M   GK
Sbjct: 217 IGFLCRKGDLDKAMALLEDMGQKGK 241



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 74/173 (42%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
           N +    + +AL  VL  + R  E   + G      F   +V F  +++     G+    
Sbjct: 135 NCTRTIQSFNALLNVLIDNDRFDEANDIFGKSYEMGFRPNTVTFNIMVKGRLAKGEWGKA 194

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
              ++E  Q+    S  +YN ++    + G   +A+     +  +G   N  TY +++E 
Sbjct: 195 CEVFDEMLQKRVQPSVVTYNSLIGFLCRKGDLDKAMALLEDMGQKGKHANEVTYALLMEG 254

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
           L ++ K + A ++   +     K     + +L+       + +EAKSLL+EM+
Sbjct: 255 LCSVEKTEEAKKLMFDMAYRGCKAQPVNFGVLMNDLGKRGKVEEAKSLLHEMK 307



 Score = 40.4 bits (93), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 71/167 (42%), Gaps = 1/167 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V + +L+ +    GDL+  ++   +  Q+ K  +  +Y ++M       K  EA +    
Sbjct: 211 VTYNSLIGFLCRKGDLDKAMALLEDMGQKGKHANEVTYALLMEGLCSVEKTEEAKKLMFD 270

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G       + V++  L   GK++ A  +   +   R+K     Y IL+       +
Sbjct: 271 MAYRGCKAQPVNFGVLMNDLGKRGKVEEAKSLLHEMKKRRLKPDVVTYNILINYLCKEGK 330

Query: 258 FDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREML 303
             EA  +L EM+  G  P  A  R+ ++ + ++G  + A   L  ML
Sbjct: 331 AMEAYKVLLEMQIGGCVPNAATYRMVVDGLCQIGDFEVALSVLNAML 377


>gi|296088471|emb|CBI37462.3| unnamed protein product [Vitis vinifera]
          Length = 673

 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 90/205 (43%), Gaps = 1/205 (0%)

Query: 99  SHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLS 158
           S    T   +   L +S R  E   LI D+ +S  L     +  +++    +G +E    
Sbjct: 443 SPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYK 502

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
              E   +       +YN  + V  +  K+ EA+  + ++I+ G +P+  T+ ++I    
Sbjct: 503 FLEEMGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFF 562

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGR 277
            +G+ D A E +  +      R +  Y +++EG     + ++A  LL+E+ + G K P R
Sbjct: 563 EIGEPDGAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDACFLLDEVVNKGIKLPYR 622

Query: 278 AMRVALERMQEMGFIQGANEFLREM 302
                L ++  +G +Q  ++    M
Sbjct: 623 KFDCFLMQLSMIGDLQAIHKLSEHM 647



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 118/269 (43%), Gaps = 32/269 (11%)

Query: 347 KALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLR--HFKSPETAWHFFCWVAYQPGYTH 404
           KA+AN  +  S ++   L       TT LV ++L   HF+  + A+ FF W  +Q  Y+H
Sbjct: 241 KAIANNANPES-DMEKALDLVGVELTTDLVIEILGKIHFEE-KMAFRFFMWAGHQDCYSH 298

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKL-----RSDGMRLPFSTIRLIIDFYGISKKADA 459
           +  A  +M+ IL+   +     R++  +     R+D   +P   + +I+  Y  ++K  A
Sbjct: 299 EPRAYNEMIDILSSTKYKVKQFRIVCDMLDYMKRNDKKSVPVEVLLMILRKY--TEKHLA 356

Query: 460 ALKAFHDDRTLCGPISKFKLML-LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
            L  F   + +     + K    + +  L     CK     + VLEEMI  G  PD  T+
Sbjct: 357 HLHKFAKKKKI-----RVKTQPEINALNLLLDALCKNPSRGMRVLEEMIEMGHTPDSFTY 411

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNG---VEPDAYMFKVLIQAY--------C----KY 563
           +  +  F   G      +LF  +R  G     P A  + ++I A         C    K 
Sbjct: 412 NTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKD 471

Query: 564 LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           + NS ++PD +T + + + +   G+ +EA
Sbjct: 472 MINSGVLPDVSTYKQVIEGMCLAGKVEEA 500



 Score = 45.4 bits (106), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 10/119 (8%)

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR------TSKQ 244
            +    ++I+ G  P+S TY   I+     G +  A E+F     MR K       T+K 
Sbjct: 392 GMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGMVTEATELFE---FMRTKGSTMSSPTAKT 448

Query: 245 YLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREM 302
           Y I++   V  +R +E   L+ +M + G  P     +  +E M   G ++ A +FL EM
Sbjct: 449 YAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEM 507



 Score = 43.1 bits (100), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 10/172 (5%)

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALK 462
           T   YA+  M+  L +    E   +LI  + + G+    ST + +I+   ++ K + A K
Sbjct: 445 TAKTYAI--MILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYK 502

Query: 463 AFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
              +     G       ++ Y+  L  L + K+  +A+ +   MI +G VP V TF+ L+
Sbjct: 503 FLEE----MGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLI 558

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAA 574
             F   G+     + +  + + G   D   + V+I+     L N N M DA 
Sbjct: 559 SMFFEIGEPDGAFETWHEMDKRGCARDTDTYCVMIEG----LFNCNKMEDAC 606



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 5/94 (5%)

Query: 469 TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
           T+  P +K      Y+ ++  L +  R  +   ++++MI SG++PDV T+  ++    L 
Sbjct: 440 TMSSPTAK-----TYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLA 494

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           G  +   K    +   G  PD   +   +   C+
Sbjct: 495 GKVEEAYKFLEEMGNKGYRPDIVTYNCFLDVLCE 528



 Score = 39.3 bits (90), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 3/105 (2%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAI---PNSRTYTVMIEHLVNLGKLDSALEVF 230
           +YN  +  + K G   EA E F  +  +G+    P ++TY +MI  LV   + +   ++ 
Sbjct: 410 TYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKTYAIMILALVQSDRTEECFKLI 469

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             +    +      Y  ++EG     + +EA   L EM + G  P
Sbjct: 470 KDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMGNKGYRP 514


>gi|414588908|tpg|DAA39479.1| TPA: chloroplast RNA splicing4 [Zea mays]
          Length = 1438

 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 107/249 (42%), Gaps = 29/249 (11%)

Query: 370 VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
           +WT   +  V       E A   F  +  + G+  D      +L   A+ G+V+ V+   
Sbjct: 328 LWTYNAMVSVHGRCGKAEEAERLFRELV-EKGFMPDAITYNSLLYAFAKEGNVDKVEHTC 386

Query: 430 AKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFKLMLLYSSLLR 488
            +L   G +    T   +I  YG   + D A+  + + R + C P +     + Y+ ++ 
Sbjct: 387 EQLVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDA-----VTYTVMID 441

Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548
           +L K  R  +A  VLE+M  +G+ P +  FS L+  +A  G     +  F  +  +GV+P
Sbjct: 442 SLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKP 501

Query: 549 DAYMFKVLIQAY----------CKY--LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVE 596
           D   + V++  +          C Y  + N N  PD    ++L  +L K          E
Sbjct: 502 DRLAYLVMLDVFARSGDTEKMLCLYRKMMNDNYRPDDDMYQVLLVALAK----------E 551

Query: 597 ERCEKINDV 605
           ++CE+I +V
Sbjct: 552 DKCEEIEEV 560



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 113/248 (45%), Gaps = 13/248 (5%)

Query: 67  LDPFIVTH-----ALRSAPNADSALSIME---ALKSNPNFSHNQSTLHALATVLAKSQRN 118
           L P ++T+     A   + N + A+++ E   A +  P+      T +A+ +V  +  + 
Sbjct: 289 LRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLW----TYNAMVSVHGRCGKA 344

Query: 119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV 178
            E + L  ++    F+  ++ + +L+  ++  G+++ V  T  +  +     +  +YN +
Sbjct: 345 EEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTM 404

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI 238
           + +Y K G+   AV  + ++   G  P++ TYTVMI+ L  + ++  A +V   +    +
Sbjct: 405 IHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGL 464

Query: 239 KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANE 297
           K T   +  L+  +    R  +A++  + M   G  P R A  V L+     G  +    
Sbjct: 465 KPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLC 524

Query: 298 FLREMLPD 305
             R+M+ D
Sbjct: 525 LYRKMMND 532



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 104/234 (44%), Gaps = 12/234 (5%)

Query: 51  RSNSSNSLSSLLNDRLLDPFIVT-HALRSAPNADSALSIMEALKSNPNFSHNQS------ 103
           R + +  L   ++DR +DP +V+ + L +A +    L+   AL  +  F   QS      
Sbjct: 236 RFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVAL--DLLFEVRQSGLRPDV 293

Query: 104 -TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
            T + L +  ++S    +  T+  D+ +S+       +  ++  +   G  E     + E
Sbjct: 294 ITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRE 353

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVE-TFRQVIDEGAIPNSRTYTVMIEHLVNLG 221
             ++  +    +YN ++  +AK G N + VE T  Q++  G   N  TY  MI     +G
Sbjct: 354 LVEKGFMPDAITYNSLLYAFAKEG-NVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMG 412

Query: 222 KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +LD A+ ++  +  M     +  Y ++++    + R  EA  +L +M D G  P
Sbjct: 413 RLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKP 466



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 80/194 (41%), Gaps = 18/194 (9%)

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSL 486
           L+ ++R  G+R    T   +I     S   + A+  F D   + C P      +  Y+++
Sbjct: 280 LLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPD-----LWTYNAM 334

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           +    +C +  +A  +  E++  G +PD  T++ L+Y FA +G+   V+     + + G 
Sbjct: 335 VSVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGF 394

Query: 547 EPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAA 594
           + +   +  +I  Y K             +      PDA T  ++  SL K  R  EA  
Sbjct: 395 KKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGK 454

Query: 595 VEERCEKINDVPSL 608
           V E        P+L
Sbjct: 455 VLEDMTDAGLKPTL 468



 Score = 43.5 bits (101), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 32/157 (20%), Positives = 71/157 (45%), Gaps = 4/157 (2%)

Query: 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465
           V ++  M+  L   G ++ +  ++ +L+    ++  ST+ L++D +  +      +K ++
Sbjct: 815 VDSVNGMMRALIVDGRLDELYVVVEELQDMNFKISKSTVLLLLDAFAKAGDVFEVMKIYN 874

Query: 466 DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF 525
             +           M LY S++  L    R  D   ++ EM  +G  PD+   + L+  +
Sbjct: 875 GMKA----AGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAGFKPDLAILNALLNMY 930

Query: 526 ALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
              G+     +++  + + G+EPD   +  LI  YC+
Sbjct: 931 TAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCR 967


>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
 gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
          Length = 658

 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 95/413 (23%), Positives = 169/413 (40%), Gaps = 51/413 (12%)

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA----IPNSRTYTVMIEH 216
           +E+R +    S +S+N V++V    G     +E +  V++        PN  ++ ++I+ 
Sbjct: 140 DEFRCKR---SVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKA 196

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
           L  LG +D A+EVF  +P  +       Y  L++G    ER DEA  LL+EM+ +G  P 
Sbjct: 197 LCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPS 256

Query: 277 RAM-RVALERMQEMGFIQGA-----NEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNS 330
             +  V ++ + + G +        N FL+   P++   N                    
Sbjct: 257 PVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNT------------------- 297

Query: 331 GVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW 390
              + +G+ LK  LD    A +L E    +VS       V    L+  +++  ++ + A 
Sbjct: 298 ---LIHGLCLKGKLDK---AVSLLE---RMVSSKCIPNDVTYGTLINGLVKQRRAMDGAR 348

Query: 391 HFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF 450
                   + GY  + +    +++ L + G  E    L  K+   G R        +ID 
Sbjct: 349 LLI--SMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVID- 405

Query: 451 YGISKKADAALKAFHDDRTLCGPISKFKL--MLLYSSLLRTLTKCKRDFDAINVLEEMIF 508
            G+ ++     K       L G IS   L  +  YSSL++   K     +AI V  EM  
Sbjct: 406 -GLCREG----KPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDE 460

Query: 509 SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           +G   +   +S L+      G  K    ++S +   G++PD   +  +I+  C
Sbjct: 461 TGCSRNEFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLC 513



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 103/241 (42%), Gaps = 4/241 (1%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + H L      D A+S++E + S+     N  T   L   L K +R  +   L+  +   
Sbjct: 298 LIHGLCLKGKLDKAVSLLERMVSSKCIP-NDVTYGTLINGLVKQRRAMDGARLLISMEER 356

Query: 132 KF-LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
            + LN  + +  L+      G  E  ++ W +  ++    +   Y+ V+    + GK  E
Sbjct: 357 GYRLNQHI-YSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNE 415

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A E    +I  G +PN  TY+ +++     G  + A++V+  +      R    Y +L++
Sbjct: 416 AKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLID 475

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIK 309
           G  GV R  EA  + ++M   G  P   A    ++ +  +G +  A +   EML  +  K
Sbjct: 476 GLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQEEPK 535

Query: 310 N 310
           +
Sbjct: 536 S 536



 Score = 38.9 bits (89), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 84/388 (21%), Positives = 145/388 (37%), Gaps = 50/388 (12%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YN+++    K G      +    +  +G  PN  TY  +I  L   GKLD A+ +   + 
Sbjct: 260 YNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMV 319

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQ 293
             +       Y  L+ G V   R  +   LL  M + G +       V +  + + G  +
Sbjct: 320 SSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVLISGLFKEGKAE 379

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTL 353
            A    ++M       N+  Y    D    E   N +          K  L+    +  L
Sbjct: 380 EAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEA----------KEILNGMISSGCL 429

Query: 354 DEWSPEVVSLLADAKFVWTTRL---VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
               P V +  +  K  + T L     +V R       + + FC+     G         
Sbjct: 430 ----PNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDG--------- 476

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMR---LPFSTIRLIIDFYGISKKADAALKAFHDD 467
                L   G V+    + +K+ + G++   + +S+  +I    GI    DAALK +H+ 
Sbjct: 477 -----LCGVGRVKEAMMVWSKMLTIGIKPDTVAYSS--MIKGLCGIG-SMDAALKLYHE- 527

Query: 468 RTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
             LC    K +  ++ Y+ LL  L   K    A+++L  M+  G  PDV T +  +   +
Sbjct: 528 -MLCQEEPKSQPDVVTYNILLDGLCMQKDVSRAVDLLNCMLDRGCDPDVITCNTFLNTLS 586

Query: 527 LQGD---------EKIVQKLFSMVRQNG 545
            + D         E++V +L    R +G
Sbjct: 587 EKSDSCEEGRSFLEELVARLLKRQRVSG 614


>gi|413952776|gb|AFW85425.1| chloroplast RNA splicing4 [Zea mays]
          Length = 1435

 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 107/249 (42%), Gaps = 29/249 (11%)

Query: 370 VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
           +WT   +  V       E A   F  +  + G+  D      +L   A+ G+V+ V+   
Sbjct: 328 LWTYNAMVSVHGRCGKAEEAERLFRELV-EKGFMPDAITYNSLLYAFAKEGNVDKVEHTC 386

Query: 430 AKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFKLMLLYSSLLR 488
            +L   G +    T   +I  YG   + D A+  + + R + C P +     + Y+ ++ 
Sbjct: 387 EQLVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDA-----VTYTVMID 441

Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548
           +L K  R  +A  VLE+M  +G+ P +  FS L+  +A  G     +  F  +  +GV+P
Sbjct: 442 SLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKP 501

Query: 549 DAYMFKVLIQAY----------CKY--LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVE 596
           D   + V++  +          C Y  + N N  PD    ++L  +L K          E
Sbjct: 502 DRLAYLVMLDVFARSGDTEKMLCLYRKMMNDNYRPDDDMYQVLLVALAK----------E 551

Query: 597 ERCEKINDV 605
           ++CE+I +V
Sbjct: 552 DKCEEIEEV 560



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 113/248 (45%), Gaps = 13/248 (5%)

Query: 67  LDPFIVTH-----ALRSAPNADSALSIME---ALKSNPNFSHNQSTLHALATVLAKSQRN 118
           L P ++T+     A   + N + A+++ E   A +  P+      T +A+ +V  +  + 
Sbjct: 289 LRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLW----TYNAMVSVHGRCGKA 344

Query: 119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV 178
            E + L  ++    F+  ++ + +L+  ++  G+++ V  T  +  +     +  +YN +
Sbjct: 345 EEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTM 404

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI 238
           + +Y K G+   AV  + ++   G  P++ TYTVMI+ L  + ++  A +V   +    +
Sbjct: 405 IHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGL 464

Query: 239 KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANE 297
           K T   +  L+  +    R  +A++  + M   G  P R A  V L+     G  +    
Sbjct: 465 KPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLC 524

Query: 298 FLREMLPD 305
             R+M+ D
Sbjct: 525 LYRKMMND 532



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 104/234 (44%), Gaps = 12/234 (5%)

Query: 51  RSNSSNSLSSLLNDRLLDPFIVT-HALRSAPNADSALSIMEALKSNPNFSHNQS------ 103
           R + +  L   ++DR +DP +V+ + L +A +    L+   AL  +  F   QS      
Sbjct: 236 RFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVAL--DLLFEVRQSGLRPDV 293

Query: 104 -TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
            T + L +  ++S    +  T+  D+ +S+       +  ++  +   G  E     + E
Sbjct: 294 ITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRE 353

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVE-TFRQVIDEGAIPNSRTYTVMIEHLVNLG 221
             ++  +    +YN ++  +AK G N + VE T  Q++  G   N  TY  MI     +G
Sbjct: 354 LVEKGFMPDAITYNSLLYAFAKEG-NVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMG 412

Query: 222 KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +LD A+ ++  +  M     +  Y ++++    + R  EA  +L +M D G  P
Sbjct: 413 RLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKP 466



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 77/183 (42%), Gaps = 18/183 (9%)

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSL 486
           L+ ++R  G+R    T   +I     S   + A+  F D   + C P      +  Y+++
Sbjct: 280 LLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPD-----LWTYNAM 334

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           +    +C +  +A  +  E++  G +PD  T++ L+Y FA +G+   V+     + + G 
Sbjct: 335 VSVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGF 394

Query: 547 EPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAA 594
           + +   +  +I  Y K             +      PDA T  ++  SL K  R  EA  
Sbjct: 395 KKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGK 454

Query: 595 VEE 597
           V E
Sbjct: 455 VLE 457



 Score = 43.1 bits (100), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 32/157 (20%), Positives = 71/157 (45%), Gaps = 4/157 (2%)

Query: 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465
           V ++  M+  L   G ++ +  ++ +L+    ++  ST+ L++D +  +      +K ++
Sbjct: 815 VDSVNGMMRALIVDGRLDELYVVVEELQDMNFKISKSTVLLLLDAFAKAGDVFEVMKIYN 874

Query: 466 DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF 525
             +           M LY S++  L    R  D   ++ EM  +G  PD+   + L+  +
Sbjct: 875 GMKA----AGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAGFKPDLAILNALLNMY 930

Query: 526 ALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
              G+     +++  + + G+EPD   +  LI  YC+
Sbjct: 931 TAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCR 967


>gi|242074484|ref|XP_002447178.1| hypothetical protein SORBIDRAFT_06g029920 [Sorghum bicolor]
 gi|241938361|gb|EES11506.1| hypothetical protein SORBIDRAFT_06g029920 [Sorghum bicolor]
          Length = 643

 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/267 (20%), Positives = 110/267 (41%), Gaps = 24/267 (8%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDI-SSSKFLNVSVNFM 141
           D+A+++ +A+ +      +  + + L     ++ R  +  + + D+   ++     V ++
Sbjct: 224 DTAINVFDAMSTEDRVRPDVVSYNILIKGYCRAGRTQDGMSRLADLREQAELAPDKVTYL 283

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRA--KLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
            LMQ + + G     ++ + E  +R   K +   +Y +V+   +K GK FEA+  F +++
Sbjct: 284 TLMQRHYSEGTFPQCIALFQEMEERGMGKEIPQHAYVLVIGALSKDGKPFEALAVFERML 343

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
             G   N+  YT +I+ +  LG+   A+ +F  +    I+  +  Y ++V         +
Sbjct: 344 KRGCPANAAMYTALIDSMGKLGREKEAMALFERMKASGIELDAVTYGVIVNCLCRFGNME 403

Query: 260 EAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREML-----PDKRIKNV-- 311
           EA S      + G         +L +   + G +  A E   EM+     PD    NV  
Sbjct: 404 EALSCFRSCVEKGVAVNAIFYTSLIDGFGKTGMVDQAKELFEEMIAKGFVPDSYCYNVLI 463

Query: 312 -------------RYYEDGSDDDEDEN 325
                         +YE   DD  D+ 
Sbjct: 464 DALVKAGRTDIACAFYERMEDDGCDQT 490



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 88/205 (42%), Gaps = 1/205 (0%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N +   AL   + K  R  E   L   + +S     +V +  ++      G++E  LS +
Sbjct: 350 NAAMYTALIDSMGKLGREKEAMALFERMKASGIELDAVTYGVIVNCLCRFGNMEEALSCF 409

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
               ++   ++   Y  ++  + KTG   +A E F ++I +G +P+S  Y V+I+ LV  
Sbjct: 410 RSCVEKGVAVNAIFYTSLIDGFGKTGMVDQAKELFEEMIAKGFVPDSYCYNVLIDALVKA 469

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAM 279
           G+ D A   +  +      +T   Y IL++G     + +EA    + M D G  P   A 
Sbjct: 470 GRTDIACAFYERMEDDGCDQTVYTYTILIDGLFKEHKNEEALKFWDSMIDKGITPTAAAF 529

Query: 280 RVALERMQEMGFIQGANEFLREMLP 304
           RV    +   G    A   L E+ P
Sbjct: 530 RVLANGLCLSGKFSRAWRILDELAP 554



 Score = 46.2 bits (108), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 66/144 (45%), Gaps = 3/144 (2%)

Query: 135 NVSVN---FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
            V+VN   + +L+  +  +G ++     + E   +  +  +  YN+++    K G+   A
Sbjct: 416 GVAVNAIFYTSLIDGFGKTGMVDQAKELFEEMIAKGFVPDSYCYNVLIDALVKAGRTDIA 475

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
              + ++ D+G      TYT++I+ L    K + AL+ + ++    I  T+  + +L  G
Sbjct: 476 CAFYERMEDDGCDQTVYTYTILIDGLFKEHKNEEALKFWDSMIDKGITPTAAAFRVLANG 535

Query: 252 FVGVERFDEAKSLLNEMRDDGKFP 275
                +F  A  +L+E+   G  P
Sbjct: 536 LCLSGKFSRAWRILDELAPMGVIP 559



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 86/213 (40%), Gaps = 27/213 (12%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPN----FSHNQSTLHALATVLAKSQRNHELK 122
           L P  V  ALRS       L  +   +S PN     +H Q  L    ++L    R+ E  
Sbjct: 85  LSPAFVAAALRSPLLTPHPLPSLHFFRSLPNGADLLAHPQHHLSCYVSLLHSFARSRET- 143

Query: 123 TLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVY 182
             IG        + +     L+      GD  L            + LS  S   ++   
Sbjct: 144 --IGP-------DAAGQARQLVAELRAHGDAVL------------RHLSPASSASLIRSL 182

Query: 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM-RIKRT 241
           A  G + E +  ++ +   G  P+  TY  +++ LVN G LD+A+ VF A+    R++  
Sbjct: 183 AAFGLSEELLWAWQAMRLAGVEPSRLTYNCLLDGLVNAGLLDTAINVFDAMSTEDRVRPD 242

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
              Y IL++G+    R  +  S L ++R+  + 
Sbjct: 243 VVSYNILIKGYCRAGRTQDGMSRLADLREQAEL 275



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 41/81 (50%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y  ++  L+K  + F+A+ V E M+  G   +   ++ L+      G EK    LF  ++
Sbjct: 319 YVLVIGALSKDGKPFEALAVFERMLKRGCPANAAMYTALIDSMGKLGREKEAMALFERMK 378

Query: 543 QNGVEPDAYMFKVLIQAYCKY 563
            +G+E DA  + V++   C++
Sbjct: 379 ASGIELDAVTYGVIVNCLCRF 399



 Score = 38.5 bits (88), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 40/194 (20%), Positives = 69/194 (35%), Gaps = 16/194 (8%)

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLL 487
           L  ++++ G+ L   T  +I++        + AL  F      C         + Y+SL+
Sbjct: 373 LFERMKASGIELDAVTYGVIVNCLCRFGNMEEALSCFRS----CVEKGVAVNAIFYTSLI 428

Query: 488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE 547
               K      A  + EEMI  G VPD   ++ L+      G   I    +  +  +G +
Sbjct: 429 DGFGKTGMVDQAKELFEEMIAKGFVPDSYCYNVLIDALVKAGRTDIACAFYERMEDDGCD 488

Query: 548 PDAYMFKVLIQAYCKYLSNS------------NLMPDAATKELLKKSLWKEGRRKEAAAV 595
              Y + +LI    K   N              + P AA   +L   L   G+   A  +
Sbjct: 489 QTVYTYTILIDGLFKEHKNEEALKFWDSMIDKGITPTAAAFRVLANGLCLSGKFSRAWRI 548

Query: 596 EERCEKINDVPSLA 609
            +    +  +P  A
Sbjct: 549 LDELAPMGVIPETA 562


>gi|224113413|ref|XP_002316488.1| predicted protein [Populus trichocarpa]
 gi|222865528|gb|EEF02659.1| predicted protein [Populus trichocarpa]
          Length = 941

 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 83/429 (19%), Positives = 176/429 (41%), Gaps = 40/429 (9%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           F  ++ +Y+  GD+     T+   R R    S+  Y  ++  YA      EA+   R++ 
Sbjct: 297 FGLMVGYYARRGDMHRARQTFESMRARGIDPSSHVYTSLIHAYAVGRDMEEALSCVRKMN 356

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           +EG   +  TY++++      G  ++A   F           +  Y  ++  +      D
Sbjct: 357 EEGIEMSLVTYSIVVGGFAKFGNAEAADCWFKKAKERHTNLNAYIYGNIIYAYCQACNMD 416

Query: 260 EAKSLLNEMRDDGKFPGRAMRVALERMQEM--GFIQGANEFLREMLPDKRIKNVRYYEDG 317
            A++L+ EM ++G      +   L+    M  G+    NE  + ++  KR+K   +    
Sbjct: 417 RAEALVREMEEEG------IDAPLDIYHTMMDGYTMIRNE-EKCLIVFKRLKECGF---- 465

Query: 318 SDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVC 377
                       +   I YG  +  +     ++  L     EV  ++         +   
Sbjct: 466 ------------APSVITYGCLINMYTKIGKVSKAL-----EVSKMMKSVGIKHNMKTYS 508

Query: 378 KVLRHF---KSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
            ++  F   K    A+  F  V  + G   DV     ++      G+++    ++ +++ 
Sbjct: 509 MLINGFLKLKDWTNAFAVFEDV-IKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQK 567

Query: 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKC 493
           +  R    T   II  +  + +   AL+ F    R+ C P      +  +++L+  L + 
Sbjct: 568 ERCRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPT-----VHTFNALVLGLVEK 622

Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
           ++   A+ +L+EM  +G+ PD  T++ +M+ +A  GD     + F+ +R  G++ D + +
Sbjct: 623 RKMEKAVEILDEMALAGVSPDEHTYTTIMHGYAALGDTGKAFEYFTKMRNEGLQLDVFTY 682

Query: 554 KVLIQAYCK 562
           + L++A CK
Sbjct: 683 EALLKACCK 691



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 62/137 (45%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L++    SG ++  L+   E   +    +T  YNI++  +A+ G  +EA +  +Q+  EG
Sbjct: 685 LLKACCKSGRMQSALAVTREMNAQKIPRNTFVYNILIDGWARRGDIWEAADLMQQMNQEG 744

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  TYT  I      G +  A +    +    +K   K Y  L+ G+      ++A 
Sbjct: 745 VQPDIHTYTSFINACCKAGDMLRATKTMEEMEAAGVKPNVKTYTTLIHGWANASLPEKAL 804

Query: 263 SLLNEMRDDGKFPGRAM 279
           S   E++  G  P +A+
Sbjct: 805 SCFEELKLAGLKPDKAV 821



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y  +M  YA  G   +A E F ++ +EG   +  TY  +++     G++ SAL V   +
Sbjct: 646 TYTTIMHGYAALGDTGKAFEYFTKMRNEGLQLDVFTYEALLKACCKSGRMQSALAVTREM 705

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              +I R +  Y IL++G+       EA  L+ +M  +G  P
Sbjct: 706 NAQKIPRNTFVYNILIDGWARRGDIWEAADLMQQMNQEGVQP 747



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 55/146 (37%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T  AL     KS R      +  ++++ K    +  +  L+  ++  GD+        + 
Sbjct: 681 TYEALLKACCKSGRMQSALAVTREMNAQKIPRNTFVYNILIDGWARRGDIWEAADLMQQM 740

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
            Q        +Y   ++   K G    A +T  ++   G  PN +TYT +I    N    
Sbjct: 741 NQEGVQPDIHTYTSFINACCKAGDMLRATKTMEEMEAAGVKPNVKTYTTLIHGWANASLP 800

Query: 224 DSALEVFSALPLMRIKRTSKQYLILV 249
           + AL  F  L L  +K     Y  L+
Sbjct: 801 EKALSCFEELKLAGLKPDKAVYHCLM 826



 Score = 40.8 bits (94), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 75/191 (39%), Gaps = 21/191 (10%)

Query: 419 HGHVELVD-----RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGP 473
           HG+  L D         K+R++G++L   T   ++     S +  +AL    +      P
Sbjct: 652 HGYAALGDTGKAFEYFTKMRNEGLQLDVFTYEALLKACCKSGRMQSALAVTREMNAQKIP 711

Query: 474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
            + F    +Y+ L+    +    ++A +++++M   G+ PD+ T++  +      GD   
Sbjct: 712 RNTF----VYNILIDGWARRGDIWEAADLMQQMNQEGVQPDIHTYTSFINACCKAGDMLR 767

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKK 581
             K    +   GV+P+   +  LI  +             + L  + L PD A    L  
Sbjct: 768 ATKTMEEMEAAGVKPNVKTYTTLIHGWANASLPEKALSCFEELKLAGLKPDKAVYHCLMT 827

Query: 582 SLWKEGRRKEA 592
           SL       EA
Sbjct: 828 SLLSRATVAEA 838


>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
          Length = 703

 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 128/594 (21%), Positives = 218/594 (36%), Gaps = 111/594 (18%)

Query: 70  FIVTHALRSAPNADSALSIMEALKS----NPNF-SHNQSTLHALATVLAKSQRNHELKTL 124
            +V  A   A   D+AL    AL S    NP   SHN     AL     +++R  +    
Sbjct: 87  LVVLSAFSRAIMPDAALDAFRALPSILGCNPGIRSHN-----ALLDAFVRARRFSDADAF 141

Query: 125 IGDISSSKF-LNVSVNFMN---LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS 180
              +S   F   ++ N      +++     GDL+  ++ ++  R+R       +Y+ +M 
Sbjct: 142 FASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMC 201

Query: 181 VYAKT-----------------------------GKNFEAVETFRQVI--------DEGA 203
             AK                              G  F+A E F +V+        D GA
Sbjct: 202 GLAKQDRLDHALDLLDEMPRSGVQPDVVCYNALLGGCFKAGE-FEKVMRVWDKLVKDPGA 260

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
            PN  TY VM++ L   G+     EV+  +    ++     Y IL+ G       D A  
Sbjct: 261 RPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAAR 320

Query: 264 LLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDED 323
           + +E+   G     AM  +L +    GF Q             R++    + D +     
Sbjct: 321 VYSEIIKTGLVIDAAMYNSLVK----GFCQAG-----------RVQEAWKFWDSA----- 360

Query: 324 ENDDNNSGVR--IAYGVQLKPWLDPKALANTLDEWS---PEVVSLLADAKFVWTTRLVCK 378
                 +G+R    Y + +K   D   +   ++ W     +V  +     F      +C+
Sbjct: 361 ----GFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQ 416

Query: 379 VLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR 438
               F +   A+  F   A   G   DV++   M+  L   G +    ++  K+  DG +
Sbjct: 417 --NGFAN--KAFTIF-EEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCK 471

Query: 439 LPFSTI--RLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
            P S I   LI  F  + + +DA           C P      ++ Y++L+  L K ++ 
Sbjct: 472 -PNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPT-----VITYNTLIDGLCKAEKY 525

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL--FSMVRQNGVEPDAYMFK 554
            +A +V  EM+ +G  PD+ T+  L+    L  D+KI   L  +  +   G++ D  M  
Sbjct: 526 QEASSVAREMVENGFTPDITTYGSLIR--GLFSDKKIDDALSIWKQILYKGLKVDVMMHN 583

Query: 555 VLIQAYCK-------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
           +LI   C                   N  P+  T   L   L++ G   +AA +
Sbjct: 584 ILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATL 637



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 34/173 (19%), Positives = 76/173 (43%), Gaps = 1/173 (0%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T + L   L K+++  E  ++  ++  + F      + +L++   +   ++  LS W + 
Sbjct: 511 TYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQI 570

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID-EGAIPNSRTYTVMIEHLVNLGK 222
             +   +    +NI++      GK  EA+  F  + + +   PN  TY  +++ L   G 
Sbjct: 571 LYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGY 630

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +D A  +++++    ++     Y   ++G    +R  E   LL+E+   G  P
Sbjct: 631 IDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIP 683



 Score = 42.7 bits (99), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 17/145 (11%)

Query: 483 YSSLLRTLTKCKR-DFD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           Y+ +LR+L  C R D D A+ + + +    + PD  T+S LM   A Q        L   
Sbjct: 161 YNIVLRSL--CARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDE 218

Query: 541 VRQNGVEPDAYMFKVLI-------------QAYCKYLSNSNLMPDAATKELLKKSLWKEG 587
           + ++GV+PD   +  L+             + + K + +    P+ AT  ++   L K G
Sbjct: 219 MPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFG 278

Query: 588 RRKEAAAVEERCEKINDVPSLALRG 612
           R KE   V ER    N  P +   G
Sbjct: 279 RFKEVGEVWERMVANNLQPDVITYG 303


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 92/466 (19%), Positives = 177/466 (37%), Gaps = 80/466 (17%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SYN+V++   K G + +AV+ F ++ ++  +PN  TY  MI+  +  G L+S   ++S +
Sbjct: 190 SYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQM 249

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
               +K     Y +L+ G     R  E  ++L+EM                         
Sbjct: 250 LRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMAS----------------------- 286

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDEN-------DDNNSGVRI-AYGVQLKPWLD 345
                 R+M+PD    ++ +  DG     D         +    GV+I AY   +     
Sbjct: 287 ------RKMVPDGFTYSILF--DGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSI----- 333

Query: 346 PKALANTLDE-----WSPEVVSLLADAKFVWTTRLVCKVLRHF---KSPETAWHFFCWVA 397
              L N L +      + EV+  L ++  + TT +   ++  +      E A+  F  + 
Sbjct: 334 ---LLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMK 390

Query: 398 ---YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS 454
               +P   H  Y    ++  L +   +     L+ ++  +G+     T   +ID YG +
Sbjct: 391 SRLIRP--DHITY--NALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRA 446

Query: 455 KKADAALKAFHDDRTLCGPISKFKLMLL-YSSLLRTLTKCKRDFDAINVLEEMIFSGIVP 513
            + +       D +         K  ++ Y S++    K  +  +A+ +L++M    ++P
Sbjct: 447 GQLEKCFIILSDMQE-----KGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLP 501

Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY---------- 563
             Q ++ ++  +   G       L   ++ +GV P    + +LI+  CK           
Sbjct: 502 GAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELL 561

Query: 564 --LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
             L N  L PD  +   L  +         A  +E+   K    PS
Sbjct: 562 DSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPS 607



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 104/229 (45%), Gaps = 7/229 (3%)

Query: 52  SNSSNSLSSLLNDRLLDPFIVTHALRSA----PNADSALSIMEALKSNPNFSHNQSTLHA 107
           S +   L +L+N  LL   ++ + L +      + + A SI + +KS      +  T +A
Sbjct: 345 SKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRL-IRPDHITYNA 403

Query: 108 LATVLAKSQRNHELKTLIGDISSSKFLNVSV-NFMNLMQWYSTSGDLELVLSTWNEYRQR 166
           L   L K +R  E   L+ ++  +  +N SV  F  L+  Y  +G LE      ++ +++
Sbjct: 404 LINGLGKVERITEAHDLVIEMEKNG-VNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEK 462

Query: 167 AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
               +  SY  +++ + K GK  EAV     +  +  +P ++ Y  +I+  +  G  D A
Sbjct: 463 GLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQA 522

Query: 227 LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             +   +    +  +   Y +L++G     +  EA+ LL+ +R+ G  P
Sbjct: 523 FMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAP 571



 Score = 46.6 bits (109), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 73/173 (42%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T   L   L K  +  + + ++  + +S  L  +V +  L+  Y   GDLE   S + + 
Sbjct: 330 TCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQM 389

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
           + R       +YN +++   K  +  EA +   ++   G  P+  T+  +I+     G+L
Sbjct: 390 KSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQL 449

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
           +    + S +    +K     Y  +V  F    +  EA ++L++M      PG
Sbjct: 450 EKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPG 502



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 35/231 (15%), Positives = 93/231 (40%), Gaps = 1/231 (0%)

Query: 73  THALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSK 132
             A   A + D A+ ++  +  +   + N  + + +   L K+  + +   L  ++    
Sbjct: 159 VQACVVAGDLDEAVGMLRRMGCDGAPAPNAFSYNVVIAGLWKAGTDCDAVKLFDEMPEKA 218

Query: 133 FLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV 192
            +   + +  ++  +   GDLE     W++  +     +  +YN+++S   + G+  E  
Sbjct: 219 VVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETA 278

Query: 193 ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
               ++     +P+  TY+++ +     G   + L +F       +K  +    IL+ G 
Sbjct: 279 AVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGL 338

Query: 253 VGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
               +  +A+ +L  + + G      +    +    ++G ++GA    ++M
Sbjct: 339 CKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQM 389



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/132 (18%), Positives = 60/132 (45%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + +  L+     +G +    +  +E   R  +    +Y+I+   +++TG +   +  F +
Sbjct: 259 ITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEE 318

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
            + +G    + T ++++  L   GK+  A EV   L    + +T+  Y  L+ G+  +  
Sbjct: 319 SVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGD 378

Query: 258 FDEAKSLLNEMR 269
            + A S+  +M+
Sbjct: 379 LEGAFSIFQQMK 390


>gi|297791089|ref|XP_002863429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297309264|gb|EFH39688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 472

 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 89/207 (42%), Gaps = 1/207 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           ++    R+    D+ L I   +        +  T   L + L +  R  E K L  ++  
Sbjct: 162 LIKALCRNDGTVDAGLKIFHEMPKR-GCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVE 220

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                  V + +L+     S +++  +    E + +    +  +Y+ +M    K G++ +
Sbjct: 221 KDCAPTVVTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQ 280

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A+E F  ++  G  PN  TYT +I  L    K+  A+E+   + L  +K  +  Y  ++ 
Sbjct: 281 AMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVIS 340

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGR 277
           GF  V +F EA + L+EM   G  P R
Sbjct: 341 GFCAVSKFREAANFLDEMILGGITPNR 367



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 1/124 (0%)

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA-VETFRQVIDEGAIPNSRTYT 211
           L L    +   R+     +  S N+++    +     +A ++ F ++   G  P+S TY 
Sbjct: 137 LNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFHEMPKRGCDPDSYTYG 196

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
            +I  L   G++D A ++F+ +       T   Y  L+ G  G +  DEA   + EM+  
Sbjct: 197 TLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYVEEMKGK 256

Query: 272 GKFP 275
           G  P
Sbjct: 257 GIEP 260



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 5/92 (5%)

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
           C P      ++ Y+SL+  L   K   +A+  +EEM   GI P+V T+S LM      G 
Sbjct: 223 CAPT-----VVTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGR 277

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
                +LF M+   G  P+   +  LI   CK
Sbjct: 278 SLQAMELFEMMMARGCRPNMVTYTTLITGLCK 309



 Score = 46.2 bits (108), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 8/163 (4%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D Y    +++ L R G ++   +L  ++          T   +I+    SK  D A
Sbjct: 187 GCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEA 246

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           ++   + +      + F     YSSL+  L K  R   A+ + E M+  G  P++ T++ 
Sbjct: 247 MRYVEEMKGKGIEPNVFT----YSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTT 302

Query: 521 LMYHFALQGDEKIVQKLFSMVRQN--GVEPDAYMFKVLIQAYC 561
           L+    L  ++KI + +  + R N  G++PDA ++  +I  +C
Sbjct: 303 LIT--GLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFC 343



 Score = 43.1 bits (100), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 17/205 (8%)

Query: 369 FVWTTRL----VCKVLRHFKSPETAWHFF--CWVAYQPGYTHDVYALEKMLTILARHGHV 422
           F W+  +    V K++R  K  E +   F      Y  GY HD  +   M++ L      
Sbjct: 8   FKWSKNITPSQVIKLMRAEKDVEKSIAVFDSATAEYANGYLHDQSSFGYMVSRLVSANKF 67

Query: 423 ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFKLML 481
           +  + ++A+++ +   +    +  I   YG   +   +L+ FH  +   C P  K     
Sbjct: 68  KAAEDIVARMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQK----- 122

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ---KLF 538
            Y ++L  L +  +   A    + M   G+ P V + + L+   AL  ++  V    K+F
Sbjct: 123 AYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIK--ALCRNDGTVDAGLKIF 180

Query: 539 SMVRQNGVEPDAYMFKVLIQAYCKY 563
             + + G +PD+Y +  LI   C++
Sbjct: 181 HEMPKRGCDPDSYTYGTLISGLCRF 205


>gi|147841407|emb|CAN66681.1| hypothetical protein VITISV_005087 [Vitis vinifera]
          Length = 882

 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 89/444 (20%), Positives = 180/444 (40%), Gaps = 37/444 (8%)

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
           K L+G+IS        + +  L+  Y  S  LE  L  ++E   ++ +    +Y  +M+ 
Sbjct: 72  KKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNG 131

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
             K+GK  EA   FR++ + G +PN  +Y  +I+ L   G +  A  +   + +  I   
Sbjct: 132 LCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFD 191

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLR 300
              Y  L++G       + A+ +   + ++   P      AL +   ++G +      L+
Sbjct: 192 VVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQ 251

Query: 301 EMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEV 360
           EM       NV                      I Y   +  +     L   +D     V
Sbjct: 252 EMEEKHIFPNV----------------------IVYSSIVDGYTKKGLLNEAMDVMRKMV 289

Query: 361 VSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQP-GYTHDVYALEKMLTILARH 419
              +    FV+ T     +  +FK+ +       +   +  G   + + ++  +  L R 
Sbjct: 290 QRNILPNVFVYGTL----IDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRS 345

Query: 420 GHVELVDRLIAKLRSDGMRLP--FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKF 477
           G +E  D L   + S G+ LP   +   ++  F+   K++D    AF+  + +    S F
Sbjct: 346 GRMEEADELFKDMMSRGL-LPDRVNYTSMMDGFFKAGKESD----AFNIAQEMTEKSSGF 400

Query: 478 KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL 537
            + + Y+ L+  L K  + +++ +    M   G+ PD  TF+ ++  +  +G+     KL
Sbjct: 401 DV-VAYNVLINGLFKLGK-YESESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKL 458

Query: 538 FSMVRQNGVEPDAYMFKVLIQAYC 561
            + ++  G++P++    +L+Q  C
Sbjct: 459 LNEMKSYGLKPNSITCNILVQRLC 482



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 12/121 (9%)

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A+ +LE M   G  PD+ T++ LM  F   GD    +KL   +    +EP+   +  LI 
Sbjct: 36  AVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYTTLID 95

Query: 559 AYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
           AYCK             ++  +L+PD  T   +   L K G+ +EA +V    E++  VP
Sbjct: 96  AYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVP 155

Query: 607 S 607
           +
Sbjct: 156 N 156



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 6/136 (4%)

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           N+ ++R  + +  +Y+I++S + K G   E V+ + ++I +G +P +RTY V+I      
Sbjct: 635 NQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKG 694

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR 280
            K+  A E+   + +  I   S  Y IL+ G+  + +  E    L        +   A R
Sbjct: 695 KKMSQAKELMQEMQVRGIPPNSSTYDILICGWYKLSKQPELNKSLKR-----SYQAEAKR 749

Query: 281 VALERMQEMGFIQGAN 296
           +  E M E GFI   N
Sbjct: 750 L-FEEMNEKGFIPCEN 764



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 4/192 (2%)

Query: 85  ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
           AL + + +KS      N   + +    L +S R  E   L  D+ S   L   VN+ ++M
Sbjct: 316 ALDLFKEMKSR-GLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMM 374

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE-GA 203
             +  +G      +   E  +++      +YN++++   K GK +E+ E+F   + + G 
Sbjct: 375 DGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGK-YES-ESFHTGMRQLGL 432

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
            P+S T+  MI      G L +AL++ + +    +K  S    ILV+        ++   
Sbjct: 433 APDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMD 492

Query: 264 LLNEMRDDGKFP 275
           LLN+M   G  P
Sbjct: 493 LLNDMLVMGFHP 504



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 93/492 (18%), Positives = 184/492 (37%), Gaps = 77/492 (15%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           Y  +M    K G    A + F+ +++E  +PN  TY+ +I+    LG ++    +   + 
Sbjct: 195 YTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEME 254

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD--------------DGKFPGRAMR 280
              I      Y  +V+G+      +EA  ++ +M                DG F      
Sbjct: 255 EKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRG 314

Query: 281 VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGV---RIAYG 337
           +AL+  +EM   +G  E     + D  + N++      + DE   D  + G+   R+ Y 
Sbjct: 315 IALDLFKEMKS-RGLEE--NNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYT 371

Query: 338 VQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVA 397
             +  +      ++  +  + E+    +    V    L+  + +  K    ++H      
Sbjct: 372 SMMDGFFKAGKESDAFN-IAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESFH---TGM 427

Query: 398 YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR------------------- 438
            Q G   D      M+    + G++    +L+ +++S G++                   
Sbjct: 428 RQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEI 487

Query: 439 ------------LPF----STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLL 482
                       + F    +T + ++D    S++AD  L   H    L G   K  L   
Sbjct: 488 EKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVIL---HXHDQLVGMGVKLDLST- 543

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++L+ T  +      A  V ++M+  GI+ D+ T++ L++ + +    K    + S + 
Sbjct: 544 YNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQML 603

Query: 543 QNGVEPDAYMFKVLI------------QAYCKYLSNSNLMPDAATKELLKKSLWKEGRRK 590
             GV P+   + +L+                  +    L+P+A T ++L     K G  K
Sbjct: 604 TEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMK 663

Query: 591 EAAAVEERCEKI 602
           E   V+  CE I
Sbjct: 664 E--CVKLYCEMI 673



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 29/149 (19%), Positives = 65/149 (43%)

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
           D+     L   + +  L+  Y  S  L+   +  ++        + E+YNI++   +   
Sbjct: 566 DMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAAR 625

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
              EA     Q+ + G +PN+ TY +++     +G +   ++++  +        ++ Y 
Sbjct: 626 LIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYN 685

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +L+  F   ++  +AK L+ EM+  G  P
Sbjct: 686 VLISCFAKGKKMSQAKELMQEMQVRGIPP 714



 Score = 46.6 bits (109), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 59/139 (42%)

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
           +F  L+  Y  +G++   +      +         +YN +M+ + K G  F A +   ++
Sbjct: 19  HFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEI 78

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
                 PN  TYT +I+       L+ AL ++  + +  +      Y  ++ G     + 
Sbjct: 79  SLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKV 138

Query: 259 DEAKSLLNEMRDDGKFPGR 277
           +EAKS+  EM + G  P R
Sbjct: 139 EEAKSVFREMEEVGVVPNR 157



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 77/195 (39%), Gaps = 1/195 (0%)

Query: 81  NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNF 140
           N  +AL ++  +KS      N  T + L   L  +    +   L+ D+    F       
Sbjct: 451 NLGNALKLLNEMKSY-GLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTH 509

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
             ++   S S   +++L   ++       L   +YN ++S + + G    A   F+ ++ 
Sbjct: 510 KAVLDASSKSRRADVILHXHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMG 569

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
           +G + +  TY  +I        L  A  V S +    +    + Y IL+ G        E
Sbjct: 570 KGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKE 629

Query: 261 AKSLLNEMRDDGKFP 275
           A  L+N+M++ G  P
Sbjct: 630 AAGLVNQMKERGLVP 644



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 62/143 (43%), Gaps = 1/143 (0%)

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           N Y+      S E +N+++  Y + G+   AVE    +  EG  P+  TY  ++     +
Sbjct: 6   NTYQHPEIRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKI 65

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR 280
           G L +A ++   + L+ ++     Y  L++ +   +  ++A  + +EM      P     
Sbjct: 66  GDLFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTY 125

Query: 281 VA-LERMQEMGFIQGANEFLREM 302
              +  + + G ++ A    REM
Sbjct: 126 TCIMNGLCKSGKVEEAKSVFREM 148



 Score = 42.7 bits (99), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 76/185 (41%), Gaps = 33/185 (17%)

Query: 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK 476
            R+G +     L+  ++++G      T   +++  G  K  D         + L G IS 
Sbjct: 28  CRNGEISRAVELLEGMKTEGPAPDIVTYNTLMN--GFCKIGD-----LFTAKKLMGEISL 80

Query: 477 FKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
             L   ++ Y++L+    K +   DA+ + +EM    +VPDV T++ +M      G  + 
Sbjct: 81  VNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEE 140

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
            + +F  + + GV P+ + +  LI                        SL+KEG   EA 
Sbjct: 141 AKSVFREMEEVGVVPNRFSYATLID-----------------------SLFKEGNVAEAF 177

Query: 594 AVEER 598
            ++ R
Sbjct: 178 VLQGR 182



 Score = 40.0 bits (92), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 26/116 (22%), Positives = 55/116 (47%)

Query: 99  SHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLS 158
           S N  T + L   L+ ++   E   L+  +     +  +  +  L+  +   G+++  + 
Sbjct: 608 SPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVK 667

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
            + E   +  +  T +YN+++S +AK  K  +A E  +++   G  PNS TY ++I
Sbjct: 668 LYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILI 723


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 117/518 (22%), Positives = 204/518 (39%), Gaps = 62/518 (11%)

Query: 67  LDPFIVTHAL----RSAPNADSALSIM-EALKSNPNFSH---NQSTLHALATVLAKSQRN 118
           L PF    +L     S P+A + LSI  +  KS P F       +T + L    A S+  
Sbjct: 46  LSPFFYFSSLPLSSNSTPDAQNELSISPQIFKSRPQFGSYKLGDATFYRLIENYATSREF 105

Query: 119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLL----STES 174
           H +  ++  +     +     F+ +   +   G   L     N + + A  L    + +S
Sbjct: 106 HFIHQVLDRMKREGRVLTETIFILI---FKACGKAHLPGEAVNFFHRMANDLHCKQTVKS 162

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVI---DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
           +N V++V  + G    A + +  V     +G  PN  TY ++I+ L  LG++D A++ F 
Sbjct: 163 FNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFR 222

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMG 290
            +PL         Y  L+ G     R DEA  LL+EM+ +G  P      V ++ + + G
Sbjct: 223 EMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNG 282

Query: 291 FIQGA-----NEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLD 345
            +  A     N FL+  +P++   N                       + +G+ LK  LD
Sbjct: 283 DLSRAAKLVDNMFLKGCVPNEVTYNT----------------------LIHGLCLKGKLD 320

Query: 346 PKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHD 405
            KAL+  L++    V S     +  + T  +   L   +  E   H    +  + G   +
Sbjct: 321 -KALS-LLEKM---VSSKCVPNQVTYGT--IINGLVKQRRAEDGVHILMSME-ERGQKAN 372

Query: 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465
            Y    +++ L + G  E   RL  ++   G +         ID     +K D A     
Sbjct: 373 EYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQ 432

Query: 466 DDRTLCGPISKFKL--MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
           +       +SK  L     YSSL++   K      AI V +EM+   +  +V   S L+ 
Sbjct: 433 E------MLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLN 486

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
                G  +    +++ +   G++PD   +  +I+  C
Sbjct: 487 GLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLC 524



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 90/196 (45%), Gaps = 4/196 (2%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L + ++  E + ++ ++ S  FL  +  + +LM+ +   GD +  +  W E   +    +
Sbjct: 418 LCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHN 477

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
               +++++   ++G+  EA+  +  ++ EG  P+   Y+ MI+ L ++G +D  L++F 
Sbjct: 478 VVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFY 537

Query: 232 ALPLMRIKRTSK--QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQE 288
            +     K       Y IL       +    A  LLN M D+G  P      + LE ++E
Sbjct: 538 EMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETLRE 597

Query: 289 -MGFIQGANEFLREML 303
            +   Q    FL E++
Sbjct: 598 RINPPQDGRLFLDELV 613



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 97/239 (40%), Gaps = 25/239 (10%)

Query: 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRL---IAKLRSDGMRLPFS 442
           P  A +FF  +A        V +   +L ++ + G      +    +    S G +    
Sbjct: 140 PGEAVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLL 199

Query: 443 TIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAIN 501
           T  LII       + D A+  F +     C P      +  YS+L+  L K +R  +A+ 
Sbjct: 200 TYNLIIKALCKLGQIDRAVDTFREMPLKNCNPD-----VFTYSTLMNGLCKERRVDEAVF 254

Query: 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           +L+EM   G +P+  TF+ L+   +  GD     KL   +   G  P+   +  LI   C
Sbjct: 255 LLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLC 314

Query: 562 ------KYLS------NSNLMPDAATKELLKKSLWKEGRRKEAA----AVEERCEKIND 604
                 K LS      +S  +P+  T   +   L K+ R ++      ++EER +K N+
Sbjct: 315 LKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANE 373


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 104/452 (23%), Positives = 176/452 (38%), Gaps = 40/452 (8%)

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
           LEL    + E      +L+  + + +       GK  +A    R+++ +G IP++ TY+ 
Sbjct: 426 LELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSK 485

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +I  L N  K+D+A  +F  +    +      Y IL++ F  V    +A+   +EM  DG
Sbjct: 486 VIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDG 545

Query: 273 KFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSG 331
             P      AL     +   +  ANE    ML +  I NV  Y    D          SG
Sbjct: 546 CAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALID------GHCKSG 599

Query: 332 VRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLV---CKVLRHFKSPET 388
            +I    Q+   +   A    +D +       + D        LV   CK     K    
Sbjct: 600 -QIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKA-HKVKEARD 657

Query: 389 AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII 448
                     +P   H VY  + ++    + G ++    +  K+   G      T   +I
Sbjct: 658 LLDVMSVEGCEP--NHIVY--DALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLI 713

Query: 449 DFYGISKKADAALKAFHDDRTL---CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEE 505
           D     K+ D ALK     R L   C P      +++Y+ ++  L K  +  +A  ++  
Sbjct: 714 DRLFKDKRLDLALKVL--SRMLENSCAPN-----VIIYTEMIDGLCKVGKTDEAYRLMSM 766

Query: 506 MIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ---NGVEPDAYMFKVLIQAYCK 562
           M   G  P+V T++ ++  F   G    V K   ++RQ    G  P+   ++VLI   C 
Sbjct: 767 MEEKGCHPNVVTYTAMIDGFGKAGK---VDKCLELMRQMGAKGCAPNFVTYRVLINHCCA 823

Query: 563 YLSNSNLMPDA-ATKELLKKSLWKE---GRRK 590
               + L+ DA    + +K++ W +   G RK
Sbjct: 824 ----AGLLDDAHQLLDEMKQTYWPKHMAGYRK 851



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 5/224 (2%)

Query: 80  PNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
           P+ D    I +    +PN      T  AL   L K+ +  E + L+  +S        + 
Sbjct: 618 PDVDMYFKIDDGNIRDPNIF----TYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIV 673

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  L+  +   G L+     + +  +R    +  +Y+ ++    K  +   A++   +++
Sbjct: 674 YDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRML 733

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           +    PN   YT MI+ L  +GK D A  + S +           Y  +++GF    + D
Sbjct: 734 ENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVD 793

Query: 260 EAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREM 302
           +   L+ +M   G  P     RV +      G +  A++ L EM
Sbjct: 794 KCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEM 837



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 57/274 (20%), Positives = 107/274 (39%), Gaps = 36/274 (13%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           +   L  A   + A SI+  + S   F  + ST   +  +L  + +      L  ++ S+
Sbjct: 451 LARCLCGAGKFEKAYSIIREMMSK-GFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSN 509

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
             +     +  L+  +   G L+     ++E  +     +  +Y  ++  Y K  K   A
Sbjct: 510 HVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSA 569

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP----------LMRIKRT 241
            E F  ++ EG IPN  TYT +I+     G+++ A ++++ +             +I   
Sbjct: 570 NELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDG 629

Query: 242 SKQ------YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL------------ 283
           + +      Y  LV+G     +  EA+ LL+ M  +G  P   +  AL            
Sbjct: 630 NIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDE 689

Query: 284 -----ERMQEMGFIQGANEFLREMLPDKRIKNVR 312
                 +M E G+  G N +    L D+  K+ R
Sbjct: 690 AQMVFTKMSERGY--GPNVYTYSSLIDRLFKDKR 721



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 41/209 (19%), Positives = 86/209 (41%), Gaps = 4/209 (1%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N+  +  LA  L  + +  +  ++I ++ S  F+  +  +  ++     +  ++     +
Sbjct: 444 NKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLF 503

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            E +    +    +Y I++  + K G   +A + F +++ +G  PN  TYT +I   +  
Sbjct: 504 EEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKA 563

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR 280
            K+ SA E+F  +           Y  L++G     + ++A  +   MR +   P   M 
Sbjct: 564 RKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMY 623

Query: 281 VALERMQEMGFIQGANEFLREMLPDKRIK 309
             ++     G I+  N F    L D   K
Sbjct: 624 FKIDD----GNIRDPNIFTYGALVDGLCK 648



 Score = 45.8 bits (107), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 3/130 (2%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y  ++  + K GK  + +E  RQ+  +G  PN  TY V+I H    G LD A ++   +
Sbjct: 778 TYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEM 837

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFI 292
                 +    Y  ++EGF     F  +  LL+E+ ++   P   A R+ ++   + G +
Sbjct: 838 KQTYWPKHMAGYRKVIEGF--NREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRL 895

Query: 293 QGANEFLREM 302
           + A E  + M
Sbjct: 896 ELALELHKXM 905



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 12/138 (8%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS ++  L    +  +A  + EEM  + +VPDV T++ L+  F   G  +  +K F  + 
Sbjct: 483 YSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMV 542

Query: 543 QNGVEPDAYMFKVLIQAYCKY--LSNSN----------LMPDAATKELLKKSLWKEGRRK 590
           ++G  P+   +  LI AY K   +S++N           +P+  T   L     K G+ +
Sbjct: 543 RDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIE 602

Query: 591 EAAAVEERCEKINDVPSL 608
           +A  +  R     D+P +
Sbjct: 603 KACQIYARMRGNADIPDV 620



 Score = 42.4 bits (98), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 11/113 (9%)

Query: 471 CGP-ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
           C P +  ++++L      R L +CKR      +L  MI  G  P  + F+ L++ +   G
Sbjct: 330 CIPNVVTYRILLCGCLRKRQLGRCKR------ILSMMITEGCYPSRRIFNSLIHAYCRSG 383

Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKS 582
           D     KL   +   G +P   ++ +LI   C     +  +P     EL +K+
Sbjct: 384 DYSYAYKLLKKMGDCGCQPGYVVYNILIGGIC----GNEKLPSLDVLELAEKA 432


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 104/246 (42%), Gaps = 11/246 (4%)

Query: 65  RLLDPFIVTHALRSAPNA-------DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR 117
           R +DP I T++  S  N        D A  + E + S   F  N  T   L     K++R
Sbjct: 357 RSIDPDIFTYS--SLINGFCMHDRLDEAKHMFELMISKDCFP-NVVTYSTLIKGFCKAKR 413

Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI 177
             E   L  ++S    +  +V +  L+  +  + D +     + +        +  +YNI
Sbjct: 414 VEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNI 473

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           ++    K GK  +A+  F  +      P+  TY +MIE +   GK++   E+F  L L  
Sbjct: 474 LLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKG 533

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQ-EMGFIQGAN 296
           +      Y  ++ GF      +EA SLL +M++DG  P       L R +   G  + + 
Sbjct: 534 VSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASA 593

Query: 297 EFLREM 302
           E ++EM
Sbjct: 594 ELIKEM 599



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 89/487 (18%), Positives = 189/487 (38%), Gaps = 52/487 (10%)

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L GD+  S+     V F  L+   +     ELV+S   + +         +Y+I ++ + 
Sbjct: 70  LFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFC 129

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           +  +   A+    +++  G  P+  T + ++    +  ++  A+ +   +  M  K  + 
Sbjct: 130 RRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTF 189

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
            +  L+ G     +  EA +L+++M   G  P        +  + + G I  A   L++M
Sbjct: 190 TFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKM 249

Query: 303 LPDKRIKNVRYYE---DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPE 359
              K   +V  Y    DG    +  +D           + L   +D K +   +  +S  
Sbjct: 250 EKGKIEADVVIYNTIIDGLCKYKHMDD----------ALNLFTEMDNKGIRPDVFTYSSL 299

Query: 360 VVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH 419
           +  L    ++   +RL+  ++    +P                  +V     ++    + 
Sbjct: 300 ISCLCNYGRWSDASRLLSDMIERKINP------------------NVVTFSALIDAFVKE 341

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK--F 477
           G +   ++L  ++    +     T   +I+ + +  + D A   F         ISK  F
Sbjct: 342 GKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL------MISKDCF 395

Query: 478 KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL 537
             ++ YS+L++   K KR  + + +  EM   G+V +  T++ L++ F    D    Q +
Sbjct: 396 PNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMV 455

Query: 538 FSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWK 585
           F  +   GV P+   + +L+   CK            YL  S + PD  T  ++ + + K
Sbjct: 456 FKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCK 515

Query: 586 EGRRKEA 592
            G+ ++ 
Sbjct: 516 AGKVEDG 522



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 86/207 (41%), Gaps = 20/207 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G +HD+Y     +    R   + L   ++AK+   G      T+  +++ Y  SK+   A
Sbjct: 113 GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDA 172

Query: 461 LKAFHDDRTLCG--PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
           + A  D     G  P +       +++L+  L    +  +A+ ++++M+  G  PD+ T+
Sbjct: 173 V-ALVDQMVEMGYKPDT-----FTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTY 226

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSN 566
             ++     +GD  +   L   + +  +E D  ++  +I   CKY            + N
Sbjct: 227 GTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDN 286

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEAA 593
             + PD  T   L   L   GR  +A+
Sbjct: 287 KGIRPDVFTYSSLISCLCNYGRWSDAS 313



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 40/204 (19%), Positives = 81/204 (39%), Gaps = 1/204 (0%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           +   L    + D AL++   +  N     +  T  +L + L    R  +   L+ D+   
Sbjct: 264 IIDGLCKYKHMDDALNLFTEM-DNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIER 322

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
           K     V F  L+  +   G L      ++E  +R+      +Y+ +++ +    +  EA
Sbjct: 323 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 382

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
              F  +I +   PN  TY+ +I+      +++  +E+F  +    +   +  Y  L+ G
Sbjct: 383 KHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHG 442

Query: 252 FVGVERFDEAKSLLNEMRDDGKFP 275
           F      D A+ +  +M   G  P
Sbjct: 443 FFQARDCDNAQMVFKQMVSVGVHP 466


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 117/518 (22%), Positives = 204/518 (39%), Gaps = 62/518 (11%)

Query: 67  LDPFIVTHAL----RSAPNADSALSIM-EALKSNPNFSH---NQSTLHALATVLAKSQRN 118
           L PF    +L     S P+A + LSI  +  KS P F       +T + L    A S+  
Sbjct: 22  LSPFFYFSSLPLSSNSTPDAQNELSISPQIFKSRPQFGSYKLGDATFYRLIENYATSREF 81

Query: 119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLL----STES 174
           H +  ++  +     +     F+ +   +   G   L     N + + A  L    + +S
Sbjct: 82  HFIHQVLDRMKREGRVLTETIFILI---FKACGKAHLPGEAVNFFHRMANDLHCKQTVKS 138

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVI---DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
           +N V++V  + G    A + +  V     +G  PN  TY ++I+ L  LG++D A++ F 
Sbjct: 139 FNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFR 198

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMG 290
            +PL         Y  L+ G     R DEA  LL+EM+ +G  P      V ++ + + G
Sbjct: 199 EMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNG 258

Query: 291 FIQGA-----NEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLD 345
            +  A     N FL+  +P++   N                       + +G+ LK  LD
Sbjct: 259 DLSRAAKLVDNMFLKGCVPNEVTYNT----------------------LIHGLCLKGKLD 296

Query: 346 PKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHD 405
            KAL+  L++    V S     +  + T  +   L   +  E   H    +  + G   +
Sbjct: 297 -KALS-LLEKM---VSSKCVPNQVTYGT--IINGLVKQRRAEDGVHILMSME-ERGQKAN 348

Query: 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465
            Y    +++ L + G  E   RL  ++   G +         ID     +K D A     
Sbjct: 349 EYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQ 408

Query: 466 DDRTLCGPISKFKL--MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
           +       +SK  L     YSSL++   K      AI V +EM+   +  +V   S L+ 
Sbjct: 409 E------MLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLN 462

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
                G  +    +++ +   G++PD   +  +I+  C
Sbjct: 463 GLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLC 500



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 90/196 (45%), Gaps = 4/196 (2%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L + ++  E + ++ ++ S  FL  +  + +LM+ +   GD +  +  W E   +    +
Sbjct: 394 LCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHN 453

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
               +++++   ++G+  EA+  +  ++ EG  P+   Y+ MI+ L ++G +D  L++F 
Sbjct: 454 VVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFY 513

Query: 232 ALPLMRIKRTSK--QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQE 288
            +     K       Y IL       +    A  LLN M D+G  P      + LE ++E
Sbjct: 514 EMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETLRE 573

Query: 289 -MGFIQGANEFLREML 303
            +   Q    FL E++
Sbjct: 574 RINPPQDGRLFLDELV 589



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 97/239 (40%), Gaps = 25/239 (10%)

Query: 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRL---IAKLRSDGMRLPFS 442
           P  A +FF  +A        V +   +L ++ + G      +    +    S G +    
Sbjct: 116 PGEAVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLL 175

Query: 443 TIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAIN 501
           T  LII       + D A+  F +     C P      +  YS+L+  L K +R  +A+ 
Sbjct: 176 TYNLIIKALCKLGQIDRAVDTFREMPLKNCNPD-----VFTYSTLMNGLCKERRVDEAVF 230

Query: 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           +L+EM   G +P+  TF+ L+   +  GD     KL   +   G  P+   +  LI   C
Sbjct: 231 LLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLC 290

Query: 562 ------KYLS------NSNLMPDAATKELLKKSLWKEGRRKEAA----AVEERCEKIND 604
                 K LS      +S  +P+  T   +   L K+ R ++      ++EER +K N+
Sbjct: 291 LKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANE 349


>gi|224128340|ref|XP_002320305.1| predicted protein [Populus trichocarpa]
 gi|222861078|gb|EEE98620.1| predicted protein [Populus trichocarpa]
          Length = 540

 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 121/306 (39%), Gaps = 54/306 (17%)

Query: 321 DEDENDDNNSGVRIAYGVQLKPWLDP---KALANTLDEW---SPEVVSLLADAKFVWTTR 374
           + DEND++++  R   G  +K   DP     +   +DE       + ++L +     +  
Sbjct: 48  ENDENDESDNCERENKGAIVKSTADPAEVHKVCKVIDELFALDHNMEAVLDECGINLSHD 107

Query: 375 LVCKVL---RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAK 431
           LV +VL   RH + P  A+ FFCW A +PG+ HD      M+ ILA+    E +  ++ +
Sbjct: 108 LVIEVLERFRHARKP--AFRFFCWAAEKPGFVHDSRTYHSMMIILAKARQFETMMSMLEE 165

Query: 432 LRSDGMRLPFSTIRLIIDFYGISKKADAALKAF-----HDDR-------TLCGPISKFKL 479
           +    + L   T  + +  +  +K+   A+  F     H  R        L   + + KL
Sbjct: 166 MGEKRL-LTLDTFSIAMRAFAAAKERKKAVGIFELMKNHKYRVGVETINALLDSLGRAKL 224

Query: 480 ------------------MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL 521
                             +  Y+ LL    + K   +A  +  EM+  G  PD+ T + +
Sbjct: 225 GKEAQALFGKLEGRFTPNLRTYTVLLNGWCRVKNLMEAGRIWNEMLDEGFKPDIVTHNIM 284

Query: 522 MYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNL 569
           +             K F +++  G  PD   + +LI+  CK             + +S  
Sbjct: 285 LEGLLRSKKRSDAIKFFEVMKAKGPSPDVRSYTILIRDLCKQTKMKEAVGYFYEMVDSGC 344

Query: 570 MPDAAT 575
            PDAA 
Sbjct: 345 HPDAAV 350



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 3/210 (1%)

Query: 67  LDPF-IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           LD F I   A  +A     A+ I E +K N  +     T++AL   L +++   E + L 
Sbjct: 174 LDTFSIAMRAFAAAKERKKAVGIFELMK-NHKYRVGVETINALLDSLGRAKLGKEAQALF 232

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
           G +      N+    + L  W      +E     WNE           ++NI++    ++
Sbjct: 233 GKLEGRFTPNLRTYTVLLNGWCRVKNLME-AGRIWNEMLDEGFKPDIVTHNIMLEGLLRS 291

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
            K  +A++ F  +  +G  P+ R+YT++I  L    K+  A+  F  +        +  Y
Sbjct: 292 KKRSDAIKFFEVMKAKGPSPDVRSYTILIRDLCKQTKMKEAVGYFYEMVDSGCHPDAAVY 351

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             L+ G+   +R D    LL EM++ G  P
Sbjct: 352 TCLMTGYGNHKRMDMVYELLKEMKEKGCPP 381



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/222 (19%), Positives = 92/222 (41%), Gaps = 35/222 (15%)

Query: 96  PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLEL 155
           P F H+  T H++  +LAK+++   + +++ ++   + L +   F   M+ ++ + + + 
Sbjct: 134 PGFVHDSRTYHSMMIILAKARQFETMMSMLEEMGEKRLLTLDT-FSIAMRAFAAAKERKK 192

Query: 156 VLSTW-----NEYR-------------QRAKL----------------LSTESYNIVMSV 181
            +  +     ++YR              RAKL                 +  +Y ++++ 
Sbjct: 193 AVGIFELMKNHKYRVGVETINALLDSLGRAKLGKEAQALFGKLEGRFTPNLRTYTVLLNG 252

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
           + +     EA   + +++DEG  P+  T+ +M+E L+   K   A++ F  +        
Sbjct: 253 WCRVKNLMEAGRIWNEMLDEGFKPDIVTHNIMLEGLLRSKKRSDAIKFFEVMKAKGPSPD 312

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
            + Y IL+       +  EA     EM D G  P  A+   L
Sbjct: 313 VRSYTILIRDLCKQTKMKEAVGYFYEMVDSGCHPDAAVYTCL 354



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 9/150 (6%)

Query: 427 RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSL 486
           R+  ++  +G +    T  ++++    SKK   A+K F   +   GP    +    Y+ L
Sbjct: 264 RIWNEMLDEGFKPDIVTHNIMLEGLLRSKKRSDAIKFFEVMKAK-GPSPDVRS---YTIL 319

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           +R L K  +  +A+    EM+ SG  PD   ++ LM  +       +V +L   +++ G 
Sbjct: 320 IRDLCKQTKMKEAVGYFYEMVDSGCHPDAAVYTCLMTGYGNHKRMDMVYELLKEMKEKGC 379

Query: 547 EPDAYMFKVLIQAYCKYLSNSNLMPDAATK 576
            PD   +  LI+     L  S  MPD A +
Sbjct: 380 PPDGKTYNALIK-----LMTSQRMPDDAVR 404



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 92/219 (42%), Gaps = 22/219 (10%)

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALK 462
           TH++  LE +L    R   ++  + + AK  S  +R   S   LI D    +K  +A   
Sbjct: 280 THNIM-LEGLLRSKKRSDAIKFFEVMKAKGPSPDVR---SYTILIRDLCKQTKMKEAVGY 335

Query: 463 AFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
            +    + C P +      +Y+ L+      KR      +L+EM   G  PD +T++ L+
Sbjct: 336 FYEMVDSGCHPDAA-----VYTCLMTGYGNHKRMDMVYELLKEMKEKGCPPDGKTYNALI 390

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLM 570
                Q       +++  + QNG+EP  + + +++++Y +             +S     
Sbjct: 391 KLMTSQRMPDDAVRIYKKMIQNGIEPSIHSYNMIMKSYFRIRNYEMGHAVWDEMSKKGFC 450

Query: 571 PDAATKELLKKSLWKEGRRKEAAA-VEERCEKINDVPSL 608
           PD  +  +    L  +GR +EA   +EE  EK    P L
Sbjct: 451 PDDNSYTVFIGGLISQGRSEEACKYLEEMIEKGMKAPQL 489


>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 775

 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 79/167 (47%), Gaps = 1/167 (0%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           +V F  LM  Y   GD+E   S ++  +    L +  +  I++    K G++FE  + F 
Sbjct: 437 AVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFN 496

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           + + +G +P    Y  +I+  +  G ++ A  V+  +  + I  ++  Y  L++GF    
Sbjct: 497 KFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGN 556

Query: 257 RFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQGANEFLREM 302
             D A  LLN+M+  G K   +A    ++   +   ++ A+E L E+
Sbjct: 557 NIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNEL 603



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 104/536 (19%), Positives = 204/536 (38%), Gaps = 61/536 (11%)

Query: 47  RLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLH 106
           +L    +++    + LN  L +  ++   L    +  SAL   E +K    F+     + 
Sbjct: 60  KLVSLESTNGKCDTSLNSALTESHVINTLLNRKSDPTSALKYFERIKKKIEFAKCTDAVC 119

Query: 107 ALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM-------QWYSTSGDLEL--VL 157
            L  +L  S   H  + L    +S K    SV F  LM       + Y+   D++   +L
Sbjct: 120 ILLLILTNSAETHRAQYLFDQFASGK----SVRFSCLMDRLVECTKLYNFPLDIQEGNIL 175

Query: 158 STWNEYRQ---RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
                + Q   R   L  E+Y+I + +      +  A+   R++   G IP   T+T +I
Sbjct: 176 EAEQHFLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVI 235

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
              V  G +  AL +   +              L++G+        A  L+NE+ + G  
Sbjct: 236 TACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLV 295

Query: 275 PGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVR 333
           P +    V ++   + G I+ A EF  EM    + K +R                 S V 
Sbjct: 296 PNKVTYSVLIDGCCKNGNIEKAFEFYSEM----KTKGIR-----------------SSVY 334

Query: 334 IAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPETAWH 391
               + L+ +L  ++  N    ++  + S LA+  F + T L  +CK        E   +
Sbjct: 335 SLNSI-LEGYLKCQSWQNAFTMFNDALESGLANV-FTFNTLLSWLCK--------EGKMN 384

Query: 392 FFC--W-VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII 448
             C  W      G + +V +   ++    R  ++    ++  ++  +G      T  +++
Sbjct: 385 EACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILM 444

Query: 449 DFYGISKKADAALKAFH--DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
           D Y      + A   FH   D  +    +   +      +++ L K  R F+  ++  + 
Sbjct: 445 DGYFKKGDIENAFSIFHRMKDANILPTDTTLGI------IIKGLCKAGRSFEGRDLFNKF 498

Query: 507 IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           +  G VP    ++ ++  F  +G+  +   ++  + + G+ P    +  LI  +CK
Sbjct: 499 VSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCK 554



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 108/586 (18%), Positives = 208/586 (35%), Gaps = 111/586 (18%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD-IS 129
           I  H L   PN+  ALS++  +++   +   + T  ++ T   K     E   L  D ++
Sbjct: 198 IFVHLLCLKPNSGYALSLLREMRA-AGWIPPEGTFTSVITACVKEGNVAEALRLKDDMVN 256

Query: 130 SSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF 189
             K +N++V   +LM+ Y   G+L   L   NE                           
Sbjct: 257 CGKSMNLAVA-TSLMKGYCMQGNLRSALVLVNE--------------------------- 288

Query: 190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV 249
                   + + G +PN  TY+V+I+     G ++ A E +S +    I+ +      ++
Sbjct: 289 --------ISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSIL 340

Query: 250 EGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIK 309
           EG++  + +  A ++ N+  + G          L  + + G +  A     E++      
Sbjct: 341 EGYLKCQSWQNAFTMFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISP 400

Query: 310 NVRYYED---GSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTL----------DEW 356
           NV  Y +   G        D+ N+  ++ Y   L     P A+  T+           E 
Sbjct: 401 NVVSYNNIILG----HCRKDNINAACKV-YKEMLDNGFTPNAVTFTILMDGYFKKGDIEN 455

Query: 357 SPEVVSLLADAKFVWT-------TRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYAL 409
           +  +   + DA  + T        + +CK  R F+  +    F        G+       
Sbjct: 456 AFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFV-----SQGFVPTCMPY 510

Query: 410 EKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR- 468
             ++    + G++ L   +  ++   G+     T   +ID +      D ALK  +D + 
Sbjct: 511 NTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKR 570

Query: 469 -----------TLCGPISKFKLM-------------------LLYSSLLRTLTKCKRDFD 498
                      TL     K + M                    +Y+S++          +
Sbjct: 571 KGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEE 630

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           AI++ ++M+  GI  D++T++ L+      G       + + +   G+ PD     VLI 
Sbjct: 631 AIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLIN 690

Query: 559 AYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
             C              ++  N++P       L    +KEG  +EA
Sbjct: 691 GLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEA 736


>gi|225454948|ref|XP_002277434.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Vitis vinifera]
          Length = 835

 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 89/444 (20%), Positives = 180/444 (40%), Gaps = 37/444 (8%)

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
           K L+G+IS        + +  L+  Y  S  LE  L  ++E   ++ +    +Y  +M+ 
Sbjct: 72  KKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNG 131

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
             K+GK  EA   FR++ + G +PN  +Y  +I+ L   G +  A  +   + +  I   
Sbjct: 132 LCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFD 191

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLR 300
              Y  L++G       + A+ +   + ++   P      AL +   ++G +      L+
Sbjct: 192 VVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQ 251

Query: 301 EMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEV 360
           EM       NV                      I Y   +  +     L   +D     V
Sbjct: 252 EMEEKHIFPNV----------------------IVYSSIVDGYTKKGLLNEAMDVMRKMV 289

Query: 361 VSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQP-GYTHDVYALEKMLTILARH 419
              +    FV+ T     +  +FK+ +       +   +  G   + + ++  +  L R 
Sbjct: 290 QRNILPNVFVYGTL----IDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRS 345

Query: 420 GHVELVDRLIAKLRSDGMRLP--FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKF 477
           G +E  D L   + S G+ LP   +   ++  F+   K++D    AF+  + +    S F
Sbjct: 346 GRMEEADELFKDMMSRGL-LPDRVNYTSMMDGFFKAGKESD----AFNIAQEMTEKSSGF 400

Query: 478 KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL 537
            + + Y+ L+  L K  + +++ +    M   G+ PD  TF+ ++  +  +G+     KL
Sbjct: 401 DV-VAYNVLINGLFKLGK-YESESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKL 458

Query: 538 FSMVRQNGVEPDAYMFKVLIQAYC 561
            + ++  G++P++    +L+Q  C
Sbjct: 459 LNEMKSYGLKPNSITCNILVQRLC 482



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 12/121 (9%)

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A+ +LE M   G  PD+ T++ LM  F   GD    +KL   +    +EP+   +  LI 
Sbjct: 36  AVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYTTLID 95

Query: 559 AYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
           AYCK             ++  +L+PD  T   +   L K G+ +EA +V    E++  VP
Sbjct: 96  AYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVP 155

Query: 607 S 607
           +
Sbjct: 156 N 156



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 6/136 (4%)

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           N+ ++R  + +  +Y+I++S + K G   E V+ + ++I +G +P +RTY V+I      
Sbjct: 635 NQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKG 694

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR 280
            K+  A E+   + +  I   S  Y IL+ G+  + +  E    L        +   A R
Sbjct: 695 KKMSQAKELMQEMQVRGIPPNSSTYDILICGWYKLSKQPELNKSLKR-----SYQAEAKR 749

Query: 281 VALERMQEMGFIQGAN 296
           +  E M E GFI   N
Sbjct: 750 L-FEEMNEKGFIPCEN 764



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 4/192 (2%)

Query: 85  ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
           AL + + +KS      N   + +    L +S R  E   L  D+ S   L   VN+ ++M
Sbjct: 316 ALDLFKEMKSR-GLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMM 374

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE-GA 203
             +  +G      +   E  +++      +YN++++   K GK +E+ E+F   + + G 
Sbjct: 375 DGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGK-YES-ESFHTGMRQLGL 432

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
            P+S T+  MI      G L +AL++ + +    +K  S    ILV+        ++   
Sbjct: 433 APDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMD 492

Query: 264 LLNEMRDDGKFP 275
           LLN+M   G  P
Sbjct: 493 LLNDMLVMGFHP 504



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 94/492 (19%), Positives = 185/492 (37%), Gaps = 77/492 (15%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           Y  +M    K G    A + F+ +++E  +PN  TY+ +I+    LG ++    +   + 
Sbjct: 195 YTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEME 254

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD--------------DGKFPGRAMR 280
              I      Y  +V+G+      +EA  ++ +M                DG F      
Sbjct: 255 EKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRG 314

Query: 281 VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGV---RIAYG 337
           +AL+  +EM   +G  E     + D  + N++      + DE   D  + G+   R+ Y 
Sbjct: 315 IALDLFKEMKS-RGLEE--NNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYT 371

Query: 338 VQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVA 397
             +  +      ++  +  + E+    +    V    L+  + +  K    ++H      
Sbjct: 372 SMMDGFFKAGKESDAFN-IAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESFH---TGM 427

Query: 398 YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR------------------- 438
            Q G   D      M+    + G++    +L+ +++S G++                   
Sbjct: 428 RQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEI 487

Query: 439 ------------LPF----STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLL 482
                       + F    +T + ++D    S++AD  L   HD   L G   K  L   
Sbjct: 488 EKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILH-MHDQ--LVGMGVKLDLST- 543

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++L+ T  +      A  V ++M+  GI+ D+ T++ L++ + +    K    + S + 
Sbjct: 544 YNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQML 603

Query: 543 QNGVEPDAYMFKVLI------------QAYCKYLSNSNLMPDAATKELLKKSLWKEGRRK 590
             GV P+   + +L+                  +    L+P+A T ++L     K G  K
Sbjct: 604 TEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMK 663

Query: 591 EAAAVEERCEKI 602
           E   V+  CE I
Sbjct: 664 E--CVKLYCEMI 673



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 29/149 (19%), Positives = 65/149 (43%)

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
           D+     L   + +  L+  Y  S  L+   +  ++        + E+YNI++   +   
Sbjct: 566 DMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAAR 625

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
              EA     Q+ + G +PN+ TY +++     +G +   ++++  +        ++ Y 
Sbjct: 626 LIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYN 685

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +L+  F   ++  +AK L+ EM+  G  P
Sbjct: 686 VLISCFAKGKKMSQAKELMQEMQVRGIPP 714



 Score = 46.2 bits (108), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 59/139 (42%)

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
           +F  L+  Y  +G++   +      +         +YN +M+ + K G  F A +   ++
Sbjct: 19  HFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEI 78

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
                 PN  TYT +I+       L+ AL ++  + +  +      Y  ++ G     + 
Sbjct: 79  SLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKV 138

Query: 259 DEAKSLLNEMRDDGKFPGR 277
           +EAKS+  EM + G  P R
Sbjct: 139 EEAKSVFREMEEVGVVPNR 157



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 77/195 (39%), Gaps = 1/195 (0%)

Query: 81  NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNF 140
           N  +AL ++  +KS      N  T + L   L  +    +   L+ D+    F       
Sbjct: 451 NLGNALKLLNEMKSY-GLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTH 509

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
             ++   S S   +++L   ++       L   +YN ++S + + G    A   F+ ++ 
Sbjct: 510 KAVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMG 569

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
           +G + +  TY  +I        L  A  V S +    +    + Y IL+ G        E
Sbjct: 570 KGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKE 629

Query: 261 AKSLLNEMRDDGKFP 275
           A  L+N+M++ G  P
Sbjct: 630 AAGLVNQMKERGLVP 644



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 62/143 (43%), Gaps = 1/143 (0%)

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           N Y+      S E +N+++  Y + G+   AVE    +  EG  P+  TY  ++     +
Sbjct: 6   NTYQHPEIRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKI 65

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR 280
           G L +A ++   + L+ ++     Y  L++ +   +  ++A  + +EM      P     
Sbjct: 66  GDLFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTY 125

Query: 281 VA-LERMQEMGFIQGANEFLREM 302
              +  + + G ++ A    REM
Sbjct: 126 TCIMNGLCKSGKVEEAKSVFREM 148



 Score = 42.7 bits (99), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 76/185 (41%), Gaps = 33/185 (17%)

Query: 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK 476
            R+G +     L+  ++++G      T   +++  G  K  D         + L G IS 
Sbjct: 28  CRNGEISRAVELLEGMKTEGPAPDIVTYNTLMN--GFCKIGD-----LFTAKKLMGEISL 80

Query: 477 FKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
             L   ++ Y++L+    K +   DA+ + +EM    +VPDV T++ +M      G  + 
Sbjct: 81  VNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEE 140

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
            + +F  + + GV P+ + +  LI                        SL+KEG   EA 
Sbjct: 141 AKSVFREMEEVGVVPNRFSYATLID-----------------------SLFKEGNVAEAF 177

Query: 594 AVEER 598
            ++ R
Sbjct: 178 VLQGR 182



 Score = 40.0 bits (92), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 26/116 (22%), Positives = 55/116 (47%)

Query: 99  SHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLS 158
           S N  T + L   L+ ++   E   L+  +     +  +  +  L+  +   G+++  + 
Sbjct: 608 SPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVK 667

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
            + E   +  +  T +YN+++S +AK  K  +A E  +++   G  PNS TY ++I
Sbjct: 668 LYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILI 723


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 104/452 (23%), Positives = 176/452 (38%), Gaps = 40/452 (8%)

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
           LEL    + E      +L+  + + +       GK  +A    R+++ +G IP++ TY+ 
Sbjct: 426 LELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSK 485

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +I  L N  K+D+A  +F  +    +      Y IL++ F  V    +A+   +EM  DG
Sbjct: 486 VIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDG 545

Query: 273 KFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSG 331
             P      AL     +   +  ANE    ML +  I NV  Y    D          SG
Sbjct: 546 CAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALID------GHCKSG 599

Query: 332 VRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLV---CKVLRHFKSPET 388
            +I    Q+   +   A    +D +       + D        LV   CK     K    
Sbjct: 600 -QIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKA-HKVKEARD 657

Query: 389 AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII 448
                     +P   H VY  + ++    + G ++    +  K+   G      T   +I
Sbjct: 658 LLDVMSVEGCEP--NHIVY--DALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLI 713

Query: 449 DFYGISKKADAALKAFHDDRTL---CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEE 505
           D     K+ D ALK     R L   C P      +++Y+ ++  L K  +  +A  ++  
Sbjct: 714 DRLFKDKRLDLALKVL--SRMLENSCAPN-----VIIYTEMIDGLCKVGKTDEAYRLMSM 766

Query: 506 MIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ---NGVEPDAYMFKVLIQAYCK 562
           M   G  P+V T++ ++  F   G    V K   ++RQ    G  P+   ++VLI   C 
Sbjct: 767 MEEKGCHPNVVTYTAMIDGFGKAGK---VDKCLELMRQMGAKGCAPNFVTYRVLINHCCA 823

Query: 563 YLSNSNLMPDA-ATKELLKKSLWKE---GRRK 590
               + L+ DA    + +K++ W +   G RK
Sbjct: 824 ----AGLLDDAHQLLDEMKQTYWPKHMAGYRK 851



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 5/224 (2%)

Query: 80  PNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
           P+ D    I +    +PN      T  AL   L K+ +  E + L+  +S        + 
Sbjct: 618 PDVDMYFKIDDGNIRDPNIF----TYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIV 673

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  L+  +   G L+     + +  +R    +  +Y+ ++    K  +   A++   +++
Sbjct: 674 YDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRML 733

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           +    PN   YT MI+ L  +GK D A  + S +           Y  +++GF    + D
Sbjct: 734 ENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVD 793

Query: 260 EAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREM 302
           +   L+ +M   G  P     RV +      G +  A++ L EM
Sbjct: 794 KCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEM 837



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 57/274 (20%), Positives = 107/274 (39%), Gaps = 36/274 (13%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           +   L  A   + A SI+  + S   F  + ST   +  +L  + +      L  ++ S+
Sbjct: 451 LARCLCGAGKFEKAYSIIREMMSK-GFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSN 509

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
             +     +  L+  +   G L+     ++E  +     +  +Y  ++  Y K  K   A
Sbjct: 510 HVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSA 569

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP----------LMRIKRT 241
            E F  ++ EG IPN  TYT +I+     G+++ A ++++ +             +I   
Sbjct: 570 NELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDG 629

Query: 242 SKQ------YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL------------ 283
           + +      Y  LV+G     +  EA+ LL+ M  +G  P   +  AL            
Sbjct: 630 NIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDE 689

Query: 284 -----ERMQEMGFIQGANEFLREMLPDKRIKNVR 312
                 +M E G+  G N +    L D+  K+ R
Sbjct: 690 AQMVFTKMSERGY--GPNVYTYSSLIDRLFKDKR 721



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 3/130 (2%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y  ++  + K GK  + +E  RQ+  +G  PN  TY V+I H    G LD A ++   +
Sbjct: 778 TYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEM 837

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFI 292
                 +    Y  ++EGF     F  +  LL+E+ ++   P   A R+ ++   + G +
Sbjct: 838 KQTYWPKHMAGYRKVIEGF--NREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRL 895

Query: 293 QGANEFLREM 302
           + A E  +EM
Sbjct: 896 ELALELHKEM 905



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 41/209 (19%), Positives = 86/209 (41%), Gaps = 4/209 (1%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N+  +  LA  L  + +  +  ++I ++ S  F+  +  +  ++     +  ++     +
Sbjct: 444 NKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLF 503

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            E +    +    +Y I++  + K G   +A + F +++ +G  PN  TYT +I   +  
Sbjct: 504 EEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKA 563

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR 280
            K+ SA E+F  +           Y  L++G     + ++A  +   MR +   P   M 
Sbjct: 564 RKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMY 623

Query: 281 VALERMQEMGFIQGANEFLREMLPDKRIK 309
             ++     G I+  N F    L D   K
Sbjct: 624 FKIDD----GNIRDPNIFTYGALVDGLCK 648



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 12/138 (8%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS ++  L    +  +A  + EEM  + +VPDV T++ L+  F   G  +  +K F  + 
Sbjct: 483 YSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMV 542

Query: 543 QNGVEPDAYMFKVLIQAYCKY--LSNSN----------LMPDAATKELLKKSLWKEGRRK 590
           ++G  P+   +  LI AY K   +S++N           +P+  T   L     K G+ +
Sbjct: 543 RDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIE 602

Query: 591 EAAAVEERCEKINDVPSL 608
           +A  +  R     D+P +
Sbjct: 603 KACQIYARMRGNADIPDV 620



 Score = 42.4 bits (98), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 11/113 (9%)

Query: 471 CGP-ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
           C P +  ++++L      R L +CKR      +L  MI  G  P  + F+ L++ +   G
Sbjct: 330 CIPNVVTYRILLCGCLRKRQLGRCKR------ILSMMITEGCYPSRRIFNSLIHAYCRSG 383

Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKS 582
           D     KL   +   G +P   ++ +LI   C     +  +P     EL +K+
Sbjct: 384 DYSYAYKLLKKMGDCGCQPGYVVYNILIGGIC----GNEKLPSLDVLELAEKA 432


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 104/452 (23%), Positives = 176/452 (38%), Gaps = 40/452 (8%)

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
           LEL    + E      +L+  + + +       GK  +A    R+++ +G IP++ TY+ 
Sbjct: 426 LELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSK 485

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +I  L N  K+D+A  +F  +    +      Y IL++ F  V    +A+   +EM  DG
Sbjct: 486 VIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDG 545

Query: 273 KFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSG 331
             P      AL     +   +  ANE    ML +  I NV  Y    D          SG
Sbjct: 546 CAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALID------GHCKSG 599

Query: 332 VRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLV---CKVLRHFKSPET 388
            +I    Q+   +   A    +D +       + D        LV   CK     K    
Sbjct: 600 -QIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKA-HKVKEARD 657

Query: 389 AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII 448
                     +P   H VY  + ++    + G ++    +  K+   G      T   +I
Sbjct: 658 LLDVMSVEGCEP--NHIVY--DALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLI 713

Query: 449 DFYGISKKADAALKAFHDDRTL---CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEE 505
           D     K+ D ALK     R L   C P      +++Y+ ++  L K  +  +A  ++  
Sbjct: 714 DRLFKDKRLDLALKVL--SRMLENSCAPN-----VIIYTEMIDGLCKVGKTDEAYRLMSM 766

Query: 506 MIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ---NGVEPDAYMFKVLIQAYCK 562
           M   G  P+V T++ ++  F   G    V K   ++RQ    G  P+   ++VLI   C 
Sbjct: 767 MEEKGCHPNVVTYTAMIDGFGKAGK---VDKCLELMRQMGAKGCAPNFVTYRVLINHCCA 823

Query: 563 YLSNSNLMPDA-ATKELLKKSLWKE---GRRK 590
               + L+ DA    + +K++ W +   G RK
Sbjct: 824 ----AGLLDDAHQLLDEMKQTYWPKHMAGYRK 851



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 5/224 (2%)

Query: 80  PNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
           P+ D    I +    +PN      T  AL   L K+ +  E + L+  +S        + 
Sbjct: 618 PDVDMYFKIDDGNIRDPNIF----TYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIV 673

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  L+  +   G L+     + +  +R    +  +Y+ ++    K  +   A++   +++
Sbjct: 674 YDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRML 733

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           +    PN   YT MI+ L  +GK D A  + S +           Y  +++GF    + D
Sbjct: 734 ENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVD 793

Query: 260 EAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREM 302
           +   L+ +M   G  P     RV +      G +  A++ L EM
Sbjct: 794 KCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEM 837



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 57/274 (20%), Positives = 107/274 (39%), Gaps = 36/274 (13%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           +   L  A   + A SI+  + S   F  + ST   +  +L  + +      L  ++ S+
Sbjct: 451 LARCLCGAGKFEKAYSIIREMMSK-GFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSN 509

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
             +     +  L+  +   G L+     ++E  +     +  +Y  ++  Y K  K   A
Sbjct: 510 HVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSA 569

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP----------LMRIKRT 241
            E F  ++ EG IPN  TYT +I+     G+++ A ++++ +             +I   
Sbjct: 570 NELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDG 629

Query: 242 SKQ------YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL------------ 283
           + +      Y  LV+G     +  EA+ LL+ M  +G  P   +  AL            
Sbjct: 630 NIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDE 689

Query: 284 -----ERMQEMGFIQGANEFLREMLPDKRIKNVR 312
                 +M E G+  G N +    L D+  K+ R
Sbjct: 690 AQMVFTKMSERGY--GPNVYTYSSLIDRLFKDKR 721



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 3/130 (2%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y  ++  + K GK  + +E  RQ+  +G  PN  TY V+I H    G LD A ++   +
Sbjct: 778 TYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEM 837

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFI 292
                 +    Y  ++EGF     F  +  LL+E+ ++   P   A R+ ++   + G +
Sbjct: 838 KQTYWPKHMAGYRKVIEGF--NREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRL 895

Query: 293 QGANEFLREM 302
           + A E  +EM
Sbjct: 896 ELALELHKEM 905



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 41/209 (19%), Positives = 86/209 (41%), Gaps = 4/209 (1%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N+  +  LA  L  + +  +  ++I ++ S  F+  +  +  ++     +  ++     +
Sbjct: 444 NKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLF 503

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            E +    +    +Y I++  + K G   +A + F +++ +G  PN  TYT +I   +  
Sbjct: 504 EEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKA 563

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR 280
            K+ SA E+F  +           Y  L++G     + ++A  +   MR +   P   M 
Sbjct: 564 RKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMY 623

Query: 281 VALERMQEMGFIQGANEFLREMLPDKRIK 309
             ++     G I+  N F    L D   K
Sbjct: 624 FKIDD----GNIRDPNIFTYGALVDGLCK 648



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 12/138 (8%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS ++  L    +  +A  + EEM  + +VPDV T++ L+  F   G  +  +K F  + 
Sbjct: 483 YSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMV 542

Query: 543 QNGVEPDAYMFKVLIQAYCKY--LSNSN----------LMPDAATKELLKKSLWKEGRRK 590
           ++G  P+   +  LI AY K   +S++N           +P+  T   L     K G+ +
Sbjct: 543 RDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIE 602

Query: 591 EAAAVEERCEKINDVPSL 608
           +A  +  R     D+P +
Sbjct: 603 KACQIYARMRGNADIPDV 620



 Score = 42.4 bits (98), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 11/113 (9%)

Query: 471 CGP-ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
           C P +  ++++L      R L +CKR      +L  MI  G  P  + F+ L++ +   G
Sbjct: 330 CIPNVVTYRILLCGCLRKRQLGRCKR------ILSMMITEGCYPSRRIFNSLIHAYCRSG 383

Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKS 582
           D     KL   +   G +P   ++ +LI   C     +  +P     EL +K+
Sbjct: 384 DYSYAYKLLKKMGDCGCQPGYVVYNILIGGIC----GNEKLPSLDVLELAEKA 432



 Score = 38.9 bits (89), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 50/241 (20%), Positives = 96/241 (39%), Gaps = 19/241 (7%)

Query: 351 NTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
           NT D +  +    L   +      LV  VL   K+PE    FF W   Q GY H      
Sbjct: 107 NTGDGFGHKTQKFLRQFREKLNETLVVDVLSLVKNPELGVKFFIWAGRQIGYGHTGPVYH 166

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470
            +L +L   G+  + ++ + ++R +   +    + ++I     +   + AL+     + L
Sbjct: 167 ALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDL 226

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
               S+    L Y++L+R   +  R   A  V  EM  SG   D  T    ++     G 
Sbjct: 227 GYKPSR----LTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGR 282

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK---------YLS---NSNLMPDAATKEL 578
            +   +  +++ +   + D  ++  +I   C+         +LS   +S+ +P+  T  +
Sbjct: 283 WR---EALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRI 339

Query: 579 L 579
           L
Sbjct: 340 L 340


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 55/101 (54%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           ++ +++ +   G+  +A+E FR++   G  PN  TY  +I  L   G+LD A +    + 
Sbjct: 200 FSTMVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKME 259

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             R+K +   Y +L+ G V +ERFDEA  +L EM D G  P
Sbjct: 260 KERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAP 300



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 108/543 (19%), Positives = 198/543 (36%), Gaps = 55/543 (10%)

Query: 72  VTHALRSAPNADSALSI---MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDI 128
           + H L      D A      ME  +  P+      T   L   L K +R  E   ++ ++
Sbjct: 238 IIHGLCKNGRLDEAFQFKEKMEKERVKPSLV----TYGVLINGLVKLERFDEANCILKEM 293

Query: 129 SSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN 188
           S   +   +V +  L+  Y   G++   L   ++        ++ + N ++  Y K+ + 
Sbjct: 294 SDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQM 353

Query: 189 FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
             A     +++  G + N  T+T +I  L    + DSAL     + L   K       +L
Sbjct: 354 EHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLL 413

Query: 249 VEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKR 307
           V G     +  EA  L   + + G         AL   + E G  + A + L+EML    
Sbjct: 414 VSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGL 473

Query: 308 IKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADA 367
           + +   Y         E        ++  G +LK  +  + +        P++       
Sbjct: 474 VLDSISYNTLILACCKEG-------KVEEGFKLKEEMVRRGI-------QPDM------- 512

Query: 368 KFVWTTRLVCKVLRHFKSPETA---WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVEL 424
              +T  ++   L +    E A   WH       + G   D Y    M+    +   VE 
Sbjct: 513 ---YTYNMLLHGLCNMGKIEEAGGLWH----ECKKNGNFPDAYTYGIMIDGYCKANRVEE 565

Query: 425 VDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS 484
            ++L  ++ +  +         +I  Y  +     A +   D R+   P +       YS
Sbjct: 566 GEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSAT----YS 621

Query: 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544
           SL+  L+       A  +L+EM   G+ P+V  ++ L+  +   G    V  +   +  N
Sbjct: 622 SLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSIN 681

Query: 545 GVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
            V P+   + ++I  +CK             ++   ++PDA T   L     KEG+ +EA
Sbjct: 682 NVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEA 741

Query: 593 AAV 595
             V
Sbjct: 742 LKV 744



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 97/493 (19%), Positives = 185/493 (37%), Gaps = 55/493 (11%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V + N++     +G L+       +  +     S  +Y ++++   K  +  EA    ++
Sbjct: 233 VTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCILKE 292

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + D G  PN+  Y  +I+    +G + +AL++   +    I   S     L++G+    +
Sbjct: 293 MSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQ 352

Query: 258 FDEAKSLLNEMR------DDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNV 311
            + A+ LL EM       + G F     R+ L+   +   +      LR   P+  +  +
Sbjct: 353 MEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTL 412

Query: 312 RYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVS--------- 362
                       +N   +  + + Y +  K +      +N L     E  S         
Sbjct: 413 LV------SGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLK 466

Query: 363 ------LLADAKFVWTTRLVC----KVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
                 L+ D+    T  L C    KV   FK  E           + G   D+Y    +
Sbjct: 467 EMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEM--------VRRGIQPDMYTYNML 518

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
           L  L   G +E    L  + + +G      T  ++ID Y  + + +   K F +  T+  
Sbjct: 519 LHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTM-- 576

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
            I +  +  +Y +L+R   +     +A  + ++M   GI     T+S L++  +  G   
Sbjct: 577 KIEQNAV--VYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVD 634

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLK 580
              +L   +R+ G+ P+   +  LI  YCK             +S +N+ P+  T  ++ 
Sbjct: 635 SANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMI 694

Query: 581 KSLWKEGRRKEAA 593
               K G  K AA
Sbjct: 695 NGHCKLGNMKAAA 707



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/205 (20%), Positives = 83/205 (40%), Gaps = 1/205 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           ++ H L +    + A  +    K N NF  +  T   +     K+ R  E + L  ++ +
Sbjct: 517 MLLHGLCNMGKIEEAGGLWHECKKNGNFP-DAYTYGIMIDGYCKANRVEEGEKLFQEMVT 575

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
            K    +V +  L++ Y  +G++       ++ R R    ++ +Y+ ++   +  G    
Sbjct: 576 MKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDS 635

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A +   ++  EG  PN   YT +I     LG++     +   + +  +      Y I++ 
Sbjct: 636 ANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMIN 695

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP 275
           G   +     A  LLNEM   G  P
Sbjct: 696 GHCKLGNMKAAAKLLNEMAQKGIVP 720



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 12/115 (10%)

Query: 510 GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC-------- 561
           G+ P ++T + L+       + K+  ++F ++   GV PD Y+F  ++ A+C        
Sbjct: 157 GLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDA 216

Query: 562 ----KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRG 612
               + +    + P+  T   +   L K GR  EA   +E+ EK    PSL   G
Sbjct: 217 IELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYG 271



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 14/232 (6%)

Query: 359 EVVSLLADAKFVWTTRLVCKVLRH--FKSPETAWHFFCW-VAYQPGYTHDVYALEKMLTI 415
           E+ SLLA+ K ++ +   C  L     K+ E    +  + +    G T DVY    M+  
Sbjct: 148 ELFSLLAN-KGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNA 206

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
               G V+    L  K+   G+     T   II  +G+ K      +AF     +     
Sbjct: 207 FCTGGRVDDAIELFRKMEKVGVAPNVVTYNNII--HGLCKNGRLD-EAFQFKEKMEKERV 263

Query: 476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ 535
           K  L + Y  L+  L K +R  +A  +L+EM   G  P+   ++ L+  +   G+     
Sbjct: 264 KPSL-VTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTAL 322

Query: 536 KLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEG 587
           ++   +  NG+ P++     LIQ YCK    SN M  A  + LL++ L   G
Sbjct: 323 QIRDDMISNGISPNSVTCNSLIQGYCK----SNQMEHA--EHLLEEMLTGGG 368



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/146 (21%), Positives = 59/146 (40%)

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
           D+ S      S  + +L+   S  G ++      +E R+     +   Y  ++  Y K G
Sbjct: 607 DMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLG 666

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
           +  +     +++      PN  TYT+MI     LG + +A ++ + +    I   +  Y 
Sbjct: 667 QMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYN 726

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDG 272
            L  GF    + +EA  + + M   G
Sbjct: 727 ALTNGFCKEGKMEEALKVCDLMSTGG 752



 Score = 39.3 bits (90), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 109/542 (20%), Positives = 200/542 (36%), Gaps = 56/542 (10%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNP 96
           LI+ +    R + +N +   ++DR   P  V +           N  +AL I + + SN 
Sbjct: 273 LINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISN- 331

Query: 97  NFSHNQSTLHALATVLAKS-QRNH------ELKTLIGDISSSKFLNVSVNFMNLMQWYST 149
             S N  T ++L     KS Q  H      E+ T  G I+   F   SV     ++    
Sbjct: 332 GISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTF--TSVIHRLCLKCRFD 389

Query: 150 SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRT 209
           S  L ++      ++    LL+     +++S   + GK  EA+E + +++++G   N+ T
Sbjct: 390 SALLFIMEMLLRNFKPNDGLLT-----LLVSGLCQNGKQSEAIELWYRLLEKGFAANTVT 444

Query: 210 YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
              +I  L   G  + A ++   +    +   S  Y  L+       + +E   L  EM 
Sbjct: 445 SNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMV 504

Query: 270 DDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDN 328
             G  P      + L  +  MG I+ A     E   +    +   Y    D     N   
Sbjct: 505 RRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKAN--- 561

Query: 329 NSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPET 388
               R+  G +L   +    +      +   + +   +       RL    +R    P+T
Sbjct: 562 ----RVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLR-DDMRSRGIPQT 616

Query: 389 AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII 448
           +            Y+  ++ L  +       G V+  ++L+ ++R +G+         +I
Sbjct: 617 S----------ATYSSLIHGLSNI-------GLVDSANQLLDEMRKEGLSPNVVCYTALI 659

Query: 449 DFY---GISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEE 505
             Y   G   K D+ L+    +      I+       Y+ ++    K      A  +L E
Sbjct: 660 GGYCKLGQMHKVDSILQEMSINNVHPNKIT-------YTIMINGHCKLGNMKAAAKLLNE 712

Query: 506 MIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLS 565
           M   GIVPD  T++ L   F  +G  +   K+  ++   G+  D   +  LI  + K L+
Sbjct: 713 MAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDDITYTTLIDGWHKPLT 772

Query: 566 NS 567
            S
Sbjct: 773 VS 774


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 98/206 (47%), Gaps = 11/206 (5%)

Query: 69  PFIVT-----HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT 123
           P +VT     H L +A   D+A  +M+ + +    +   S  +AL     +  R  E K 
Sbjct: 257 PNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVS-YNALLDGYCRLGRIEEAKQ 315

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKL-LSTESYNIVMSVY 182
           L  ++++   L   + +  L++ +  +  LE         +  A +     +Y+IV++ Y
Sbjct: 316 LFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGY 375

Query: 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
           ++  +  EA E  +++I     PN+ TY+ +I+ L   G+++ A+EV   +     K   
Sbjct: 376 SRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVD----KPDV 431

Query: 243 KQYLILVEGFVGVERFDEAKSLLNEM 268
             Y I++EG  G +R +EA +LL EM
Sbjct: 432 VTYTIVIEGLCGTDRTEEALTLLEEM 457



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 67/148 (45%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+  +  SG+LE  +        R  + +  +Y+ ++    K G   +A++ FR+
Sbjct: 190 VTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRR 249

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +  +G +PN  TYT +I  L    K+D+A  +   +        +  Y  L++G+  + R
Sbjct: 250 MTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGR 309

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVALER 285
            +EAK L  EM      P R     L R
Sbjct: 310 IEEAKQLFKEMAAKSCLPDRITYTCLVR 337



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 1/96 (1%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVID-EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           +Y+ V++ + K G+   A E  R+++  +G  P+  TYT +++ L   GK+D A E+   
Sbjct: 47  TYSTVINGFCKQGEMDRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVRE 106

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           + L  ++     +  L+ G+    + DEA  L  E+
Sbjct: 107 MKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEI 142



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 19/153 (12%)

Query: 453 ISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF-SGI 511
           ++ KA   LK   D +++  P      ++ YS+++    K      A  +L EM+   G+
Sbjct: 24  LTSKAYEVLKEMRDGKSV-APD-----LVTYSTVINGFCKQGEMDRACEILREMVTRDGM 77

Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC---------- 561
            PDV T++ ++      G      ++   ++  GVEPD + F  LI  +C          
Sbjct: 78  APDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALK 137

Query: 562 --KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
             K +  S+   DA +   L   L +E R  EA
Sbjct: 138 LYKEILTSSCRLDAVSSSALITGLCRERRIGEA 170



 Score = 42.0 bits (97), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 91/217 (41%), Gaps = 21/217 (9%)

Query: 67  LDPFIVTHAL------RSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR-NH 119
           +DP +VT+++      R+    ++A  I E +  N   + N  T  +L   L K+ R NH
Sbjct: 361 IDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARN--VAPNAVTYSSLIDGLCKAGRVNH 418

Query: 120 ELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM 179
            ++ L  ++     +  ++    L     T   L L+    N+  +     S  ++N V+
Sbjct: 419 AMEVL-KNVDKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEP----SVGTFNSVI 473

Query: 180 SVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIK 239
               + G   EA +    +   G  P   TYT ++E     G+++ A E+F  +     K
Sbjct: 474 GALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKAKK 533

Query: 240 RTSKQYLI-------LVEGFVGVERFDEAKSLLNEMR 269
            +S   L+       L+ G       D+A +++ E+R
Sbjct: 534 SSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEELR 570



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 64/156 (41%), Gaps = 31/156 (19%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y+ ++  L    R  +A+ +LEEM+   + P V TF+ ++      GD     KL  
Sbjct: 431 VVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLV 490

Query: 540 MVRQNGVEPDAYMFKVLIQAYC--------------------KYLSNSNLMPDAATKELL 579
            +  +G+EP    +  L++ +                     K  S +NL+P+ A   L+
Sbjct: 491 AMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKAKKSSSAANLVPEQAFSALI 550

Query: 580 KK-----------SLWKEGRRKEAAAVEERCEKIND 604
           +            ++ +E R +E    EE C  I D
Sbjct: 551 RGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVD 586



 Score = 40.8 bits (94), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 9/166 (5%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   DV     ++  L R G ++    ++ +++  G+     T   +I  +  ++K D A
Sbjct: 76  GMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEA 135

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRT-LTKCKRDFDAINVLEEMIF---SGIVPDVQ 516
           LK + +  T     S  +L  + SS L T L + +R  +A  + +EM         PDV 
Sbjct: 136 LKLYKEILT-----SSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVV 190

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           T++ L+  F   G+ +   K+  ++      P+   +  L+   CK
Sbjct: 191 TYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCK 236


>gi|147828617|emb|CAN73046.1| hypothetical protein VITISV_008668 [Vitis vinifera]
          Length = 477

 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 91/203 (44%), Gaps = 5/203 (2%)

Query: 77  RSAPNADSALSIMEAL--KSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFL 134
           +++   D+AL I   +  +  P  S+   TL      L +  +  E K L  ++ +    
Sbjct: 167 KNSGTMDAALRIFREMPNRGCPPHSYTYGTL---IXGLCRLGKIGEAKELFKEMETKACS 223

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
              V + +L+     S DL+  +    E   +    +  +Y+ +M  + K+G +  A+E 
Sbjct: 224 PTVVTYXSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALEL 283

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
              ++    +PN  TY+ ++  L   GKL  A+E+   + L  ++  +  Y  ++ GF  
Sbjct: 284 LDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCD 343

Query: 255 VERFDEAKSLLNEMRDDGKFPGR 277
           + +F EA + L+EM   G  P R
Sbjct: 344 ICKFHEAANFLDEMVLGGISPNR 366



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 1/124 (0%)

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAK-TGKNFEAVETFRQVIDEGAIPNSRTYT 211
           L+L L  +   R+     S  S N+++    K +G    A+  FR++ + G  P+S TY 
Sbjct: 136 LKLALRFYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPHSYTYG 195

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
            +I  L  LGK+  A E+F  +       T   Y  L+ G    +  D A  LL EM   
Sbjct: 196 TLIXGLCRLGKIGEAKELFKEMETKACSPTVVTYXSLIHGLCQSKDLDSAIRLLEEMASK 255

Query: 272 GKFP 275
           G  P
Sbjct: 256 GIKP 259



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 92/229 (40%), Gaps = 20/229 (8%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID-FYGISKKADAALKAFHD-DRT 469
           +  IL     ++L  R    +R  G+    +++ ++I      S   DAAL+ F +    
Sbjct: 126 VFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNR 185

Query: 470 LCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
            C P S       Y +L+  L +  +  +A  + +EM      P V T+  L++      
Sbjct: 186 GCPPHS-----YTYGTLIXGLCRLGKIGEAKELFKEMETKACSPTVVTYXSLIHGLCQSK 240

Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNL------------MPDAATKE 577
           D     +L   +   G++P+ + +  L+  +CK   +S              +P+  T  
Sbjct: 241 DLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYS 300

Query: 578 LLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAVSSADLTRVH 626
            L   L KEG+ +EA  + +R +     P   L G I +    D+ + H
Sbjct: 301 TLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIIS-GFCDICKFH 348


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 2/172 (1%)

Query: 133 FLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV 192
           F NV V + +L+     SG     L   +E   R +  +  +YN ++    K     +A+
Sbjct: 370 FPNV-VTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAI 428

Query: 193 ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
               ++ ++G  P+  TYTV+I  L  +G+LD A +VF  L +         Y  L+ GF
Sbjct: 429 VLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGF 488

Query: 253 VGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREML 303
                FDE  ++L++M+D+G  P      + +  + E      A + LREM+
Sbjct: 489 CNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDENDKAEKLLREMI 540



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 88/434 (20%), Positives = 169/434 (38%), Gaps = 50/434 (11%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           +V F  L++     G++   L   ++   +   L   SY  +++   + G+   AV+  R
Sbjct: 128 AVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLR 187

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           +V  +   PN   Y+ +I+ +     ++ A +++  +   RI      Y  L+ GF  V 
Sbjct: 188 RVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVG 247

Query: 257 RFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
           +   A  L N M  D   P      + ++   + G ++ A   L  M+      +V  Y 
Sbjct: 248 KLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYN 307

Query: 316 DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDE--WSPEVVSLLADAKFVWTT 373
              D                Y + +K     K+L N + +   +P+V S           
Sbjct: 308 SLMD---------------GYCL-VKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKI 351

Query: 374 RLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
           ++V + ++ F+       F   V Y             ++  L + G       L+ ++ 
Sbjct: 352 KMVDEAMKLFEEMHCKQIFPNVVTYN-----------SLVDGLCKSGRTSCALELVDEMH 400

Query: 434 SDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL------MLLYSSLL 487
             G      T   I+         DA  K  H D+ +   ++K K       +  Y+ L+
Sbjct: 401 DRGQPSNIITYNSIL---------DAICKNNHVDKAIV-LLTKIKEKGIQPDIFTYTVLI 450

Query: 488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG--DEKIVQKLFSMVRQNG 545
             L K  R  DA  V E+++  G  P++ T++ L+  F  +G  DE +   + S ++ NG
Sbjct: 451 NGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLA--MLSKMKDNG 508

Query: 546 VEPDAYMFKVLIQA 559
             P+A  +++LI +
Sbjct: 509 CIPNAITYEILIHS 522



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 48/83 (57%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +++YS+++ ++ K K   DA ++  EM+   I PDV T+S L+  F + G  K    LF+
Sbjct: 198 VVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFN 257

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK 562
            +  + + P+ Y F +LI  +CK
Sbjct: 258 RMISDNINPNVYTFSILIDGFCK 280



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 96/462 (20%), Positives = 180/462 (38%), Gaps = 67/462 (14%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           + N++M+ +++ G    +   F +++ +G  P++ T+T++I+ L   G++  AL     +
Sbjct: 95  TCNLLMNCFSQLGHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKV 154

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF--PGRAM-RVALERMQEMG 290
                +     Y  L+ G   V     A  LL   R DGK   P   M    ++ M +  
Sbjct: 155 VAQGFQLDQVSYGTLINGLCRVGETKAAVQLLR--RVDGKLVRPNVVMYSTIIDSMCKDK 212

Query: 291 FIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGV--QLKPWLDPKA 348
            +  A +   EM+  +   +V  Y               S +   + V  +LK  +D   
Sbjct: 213 LVNDAFDLYCEMVSKRISPDVVTY---------------SSLISGFCVVGKLKYAVD--- 254

Query: 349 LANTL--DEWSPEV--VSLLAD----------AKFVWTTRLVCKVLRHFKSPETAWHFFC 394
           L N +  D  +P V   S+L D          AK V    +   V     +  +    +C
Sbjct: 255 LFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYC 314

Query: 395 WVAY------------QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFS 442
            V              Q G T DV++   M+    +   V+   +L  ++    +     
Sbjct: 315 LVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVV 374

Query: 443 TIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINV 502
           T   ++D    S +   AL+   +      P +    ++ Y+S+L  + K      AI +
Sbjct: 375 TYNSLVDGLCKSGRTSCALELVDEMHDRGQPSN----IITYNSILDAICKNNHVDKAIVL 430

Query: 503 LEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           L ++   GI PD+ T++ L+      G     QK+F  +   G  P+ Y +  LI  +C 
Sbjct: 431 LTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCN 490

Query: 563 ------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                        + ++  +P+A T E+L  SL+++    +A
Sbjct: 491 KGFFDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDENDKA 532



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 44/79 (55%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           +  +L +L K K+   A+++ ++M F+GI PD  T + LM  F+  G  K    +F+ + 
Sbjct: 61  FGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSVFAKIL 120

Query: 543 QNGVEPDAYMFKVLIQAYC 561
           + G  PDA  F +LI+  C
Sbjct: 121 KKGYHPDAVTFTILIKGLC 139



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 58/268 (21%), Positives = 96/268 (35%), Gaps = 38/268 (14%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
           N + N  T   L     K  +  E K ++  +         V + +LM  Y     +   
Sbjct: 263 NINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKA 322

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
            S +N   QR       SY+I+++ + K     EA++ F ++  +   PN  TY  +++ 
Sbjct: 323 KSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDG 382

Query: 217 LVNLGKLDSALEVFSALP------------------------------LMRIKRTSKQ-- 244
           L   G+   ALE+   +                               L +IK    Q  
Sbjct: 383 LCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPD 442

Query: 245 ---YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLR 300
              Y +L+ G   V R D+A+ +  ++   G  P      +L       GF       L 
Sbjct: 443 IFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLS 502

Query: 301 EMLPDKRIKNVRYYE--DGSDDDEDEND 326
           +M  +  I N   YE    S  ++DEND
Sbjct: 503 KMKDNGCIPNAITYEILIHSLFEKDEND 530


>gi|15237375|ref|NP_199422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171880|sp|Q9FNL2.1|PP418_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46100
 gi|9757730|dbj|BAB08255.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332007954|gb|AED95337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 472

 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 79/174 (45%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T   L + L +  R  E K L  ++         V + +L+     S +++  +    E 
Sbjct: 194 TYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEM 253

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
           + +    +  +Y+ +M    K G++ +A+E F  ++  G  PN  TYT +I  L    K+
Sbjct: 254 KSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKI 313

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR 277
             A+E+   + L  +K  +  Y  ++ GF  + +F EA + L+EM   G  P R
Sbjct: 314 QEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNR 367



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 1/124 (0%)

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA-VETFRQVIDEGAIPNSRTYT 211
           L L    +   R+     +  S N+++    +     +A ++ F ++   G  P+S TY 
Sbjct: 137 LNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYG 196

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
            +I  L   G++D A ++F+ +       T   Y  L+ G  G +  DEA   L EM+  
Sbjct: 197 TLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSK 256

Query: 272 GKFP 275
           G  P
Sbjct: 257 GIEP 260



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 5/92 (5%)

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
           C P      ++ Y+SL+  L   K   +A+  LEEM   GI P+V T+S LM      G 
Sbjct: 223 CAPT-----VVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGR 277

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
                +LF M+   G  P+   +  LI   CK
Sbjct: 278 SLQAMELFEMMMARGCRPNMVTYTTLITGLCK 309



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 8/163 (4%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D Y    +++ L R G ++   +L  ++          T   +I+    SK  D A
Sbjct: 187 GCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEA 246

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           ++   + ++     + F     YSSL+  L K  R   A+ + E M+  G  P++ T++ 
Sbjct: 247 MRYLEEMKSKGIEPNVFT----YSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTT 302

Query: 521 LMYHFALQGDEKIVQKLFSMVRQN--GVEPDAYMFKVLIQAYC 561
           L+    L  ++KI + +  + R N  G++PDA ++  +I  +C
Sbjct: 303 LIT--GLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFC 343



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 85/205 (41%), Gaps = 17/205 (8%)

Query: 369 FVWTTRL----VCKVLRHFKSPETAWHFF--CWVAYQPGYTHDVYALEKMLTILARHGHV 422
           F W+  +    V K++R  K  E +   F      Y  GY HD  +   M+  L      
Sbjct: 8   FKWSKNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKF 67

Query: 423 ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFKLML 481
           +  + LI +++ +   +    +  I   YG   +   +L+ FH  +   C P  K     
Sbjct: 68  KAAEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQK----- 122

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ---KLF 538
            Y ++L  L +  +   A    + M   G+ P V + + L+   AL  ++  V    K+F
Sbjct: 123 AYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIK--ALCRNDGTVDAGLKIF 180

Query: 539 SMVRQNGVEPDAYMFKVLIQAYCKY 563
             + + G +PD+Y +  LI   C++
Sbjct: 181 LEMPKRGCDPDSYTYGTLISGLCRF 205


>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
           [Oryza sativa Japonica Group]
 gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 793

 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 106/528 (20%), Positives = 206/528 (39%), Gaps = 66/528 (12%)

Query: 109 ATVLAKSQRNHELKTLIG---DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQ 165
           +TV+A   R+  L   +    D+ +   +   V +  L+Q +  +G+    L    E   
Sbjct: 255 STVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMED 314

Query: 166 RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
                   +YN +   YA+ G   EA +    +  +G +PN+ TY  ++    N+G++D 
Sbjct: 315 SGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDE 374

Query: 226 ALEVFSALPLMRIKRTSKQYLI----LVEGFVGVE-RFDEAKSLLNEMRDDGKFPGRAMR 280
           AL +F      R+K+      +    L+ G +G + RF     +L EM   G  P R   
Sbjct: 375 ALALFD-----RMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNR--- 426

Query: 281 VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQL 340
           V    M  +   +G  +++  +L   +   V    D  +           G R  Y  ++
Sbjct: 427 VTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAY--GRCGSR-TYAFKM 483

Query: 341 KPWLDPKALANTLDEWSP--EVVSLLADAKFVWTT--RLVCKVLRH-FKSPETAWHFFCW 395
              +        L  ++    V+S   D    W+T   +V K+L++ FK  + ++     
Sbjct: 484 YDEMISSGFTPCLTTYNALLNVLSRQGD----WSTAQSIVSKMLKNGFKPNDQSYSLLLQ 539

Query: 396 VAYQPGYTHDVYALEKML---TILA-------------RHGHVELVDRLIAKLRSDGMRL 439
              + G    + ++EK +   TI               +   +E V++   ++++ G + 
Sbjct: 540 CYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKP 599

Query: 440 PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL---MLLYSSLLRTLTKCKRD 496
                  ++  Y  +     A + F         I +  L   ++ Y+SL+    K    
Sbjct: 600 DLVIFNSMLAMYAKNGLYSKATEMFDS-------IKQSGLSPDLITYNSLMDMYAKSNES 652

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
           ++A  +L+++  S + PDV +++ ++  F  QG  K  Q++ S +  +G+ P    +  L
Sbjct: 653 WEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTL 712

Query: 557 IQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           +  Y              Y+ + NL P   T   +  S  K  R  EA
Sbjct: 713 VGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDEA 760



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 85/426 (19%), Positives = 155/426 (36%), Gaps = 68/426 (15%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF-EAVETFRQV 198
           +  ++   S +G  E  L  + E R++  + +  +YN+V+ VY + G+++   V    ++
Sbjct: 183 YTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEM 242

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
              G  P+  T + +I      G LD A+  F  L           Y  L++ F     +
Sbjct: 243 RAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNY 302

Query: 259 DEAKSLLNEMRDDGKFPGRAMRVALE-RMQEMGFIQGANEFLREMLPDKRIKNVRYYEDG 317
            EA  +L EM D G  P       L       GF + A + L  M     + N   Y   
Sbjct: 303 TEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTY--- 359

Query: 318 SDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVC 377
              +       N G R+   + L   +        ++ ++     L   ++F     ++ 
Sbjct: 360 ---NTVMTAYANVG-RVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLE 415

Query: 378 KVLRHFKSPE-TAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
           ++ R   +P    W+                    ML +  + G  + V R++  ++S G
Sbjct: 416 EMSRSGCTPNRVTWN-------------------TMLAVCGKRGMEDYVTRVLNGMKSCG 456

Query: 437 MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
           + L   T   +I  YG                                       +C   
Sbjct: 457 VELSRDTYNTLISAYG---------------------------------------RCGSR 477

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
             A  + +EMI SG  P + T++ L+   + QGD    Q + S + +NG +P+   + +L
Sbjct: 478 TYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLL 537

Query: 557 IQAYCK 562
           +Q Y K
Sbjct: 538 LQCYAK 543



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 23/225 (10%)

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
           PG   DV A   +L  L+R G  E   +L A+LR  G+     T  +++D YG   ++  
Sbjct: 174 PGSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWP 233

Query: 460 ALKAFHDDRTLCG-PISKFKLMLLYSSLLRTLTKCKRDF---DAINVLEEMIFSGIVPDV 515
            + A  ++    G     F       +    +  C RD     A+   E++   G VP V
Sbjct: 234 RIVALLEEMRAAGVEPDDF-------TASTVIAACGRDGLLDQAVAFFEDLKARGHVPCV 286

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------Y 563
            T++ L+  F   G+     ++   +  +G +PDA  +  L   Y +             
Sbjct: 287 VTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDT 346

Query: 564 LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
           +++  L+P+  T   +  +    GR  EA A+ +R +K   VP++
Sbjct: 347 MTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNV 391



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 94/509 (18%), Positives = 194/509 (38%), Gaps = 54/509 (10%)

Query: 69  PFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT 123
           P +VT+         A N   AL +++ ++ +     +  T + LA   A++    E   
Sbjct: 284 PCVVTYNALLQVFGKAGNYTEALRVLKEMEDS-GCQPDAVTYNELAGTYARAGFFEEAAK 342

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
            +  ++S   L  +  +  +M  Y+  G ++  L+ ++  ++   + +  +YN++  +  
Sbjct: 343 CLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLG 402

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           K  +    +E   ++   G  PN  T+  M+      G  D    V + +    ++ +  
Sbjct: 403 KKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRD 462

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA-LERMQEMGFIQGANEFLREM 302
            Y  L+  +        A  + +EM   G  P      A L  +   G    A   + +M
Sbjct: 463 TYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKM 522

Query: 303 LPDKRIKN-------VRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDE 355
           L +    N       ++ Y  G +    E+ +      +  G     W+           
Sbjct: 523 LKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEK----EVYVGTIFPSWV----------- 567

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
               ++  L  A F           R  +  E A   F  V  Q GY  D+     ML +
Sbjct: 568 ----ILRTLVIANF---------KCRRLEGVEKA---FQEVKAQ-GYKPDLVIFNSMLAM 610

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
            A++G       +   ++  G+     T   ++D Y  S ++  A K     ++     S
Sbjct: 611 YAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKS-----S 665

Query: 476 KFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA-LQGDEKI 533
           + K  ++ Y++++    K     +A  +L EMI  G+ P V T+  L+  +A L+   + 
Sbjct: 666 QVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEA 725

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            + +  M+  N ++P    ++ ++ +YCK
Sbjct: 726 REVVNYMIHHN-LKPMELTYRRVVDSYCK 753



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 5/192 (2%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A++  E LK+  +      T +AL  V  K+    E   ++ ++  S     +V +  
Sbjct: 268 DQAVAFFEDLKARGHVPC-VVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNE 326

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L   Y+ +G  E      +    +  L +T +YN VM+ YA  G+  EA+  F ++   G
Sbjct: 327 LAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNG 386

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI--KRTSKQYLILVEGFVGVERFDE 260
            +PN  TY ++   L    +  + LE+   +        R +   ++ V G  G+E  D 
Sbjct: 387 YVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGME--DY 444

Query: 261 AKSLLNEMRDDG 272
              +LN M+  G
Sbjct: 445 VTRVLNGMKSCG 456



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 13/161 (8%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE------SYNIVMSVYAKTGKNFEA 191
           + + +LM  Y+ S +      +W   +   +L S++      SYN V++ + K G   EA
Sbjct: 637 ITYNSLMDMYAKSNE------SWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEA 690

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
                ++I +G  P   TY  ++    +L   + A EV + +    +K     Y  +V+ 
Sbjct: 691 QRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDS 750

Query: 252 FVGVERFDEAKSLLNEMRD-DGKFPGRAMRVALERMQEMGF 291
           +   +R+DEA+  L+E+ D D  F  +   +   R+++  F
Sbjct: 751 YCKAKRYDEAREFLSEISDTDQNFDQKLQHMLEARIKDAQF 791


>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 8/142 (5%)

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
           +LM  Y+  G ++ +   + E  QR       S+N+++S Y K  +  +AV+ FRQ+ ++
Sbjct: 172 SLMDMYAEVGRVQNLRQVFEEMPQR----DVVSWNVLISGYVKCRRYEDAVDVFRQIFND 227

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
             I     +T M+   VN G+LD A E+F   P+    R    +  ++ G+V   RFD+A
Sbjct: 228 MPIKTVICWTSMVSGYVNCGQLDEARELFERSPV----RDVVLWTAMINGYVQFNRFDDA 283

Query: 262 KSLLNEMRDDGKFPGRAMRVAL 283
            +L  EM+     P R   VAL
Sbjct: 284 VALFREMQIKRVSPDRFTLVAL 305


>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 588

 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 131/323 (40%), Gaps = 40/323 (12%)

Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
           G+ E  +  +NE   +    +  ++++++ +  K G+  +A +    +I  G +PN  TY
Sbjct: 251 GNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTY 310

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
           T +I+    +G L+SA E+F ++P    +     Y +L+ G+    + +EA  L NEM  
Sbjct: 311 TSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLH 370

Query: 271 DGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNV---RYYEDGSDDDEDEND 326
            G +P  +   V L+ +   G +  A E  R + P    K++     + DG         
Sbjct: 371 VGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGL-------- 422

Query: 327 DNNSGVRIAYGVQLKPWLDPKALANTLDEWSP----EVVSLLADAKFVWTTRLVCKVLRH 382
                 +  Y        +   L N L+ ++     E    L D         +CK  + 
Sbjct: 423 -----CKNGY------IFEAMKLFNELESYNMKLDIETFGCLIDG--------LCKAGKL 463

Query: 383 FKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFS 442
               ETAW  F    Y+ G   D  A   M+    + G V+  + L  K+  +G      
Sbjct: 464 ----ETAWELF-EKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLI 518

Query: 443 TIRLIIDFYGISKKADAALKAFH 465
           T  +++  +  S K +  ++  H
Sbjct: 519 TYSILMRGFYESNKLEKVVQLLH 541



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           +S L+  L K  +   A  +LE MI  GIVP++ T++ L+  F L GD    ++LF  + 
Sbjct: 275 FSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMP 334

Query: 543 QNGVEPDAYMFKVLIQAYCKYLSNSNLM------------PDAATKELLKKSLWKEGRRK 590
             G EPD   + +LI  YCK L     M            PD  T  +L K+L+  G+  
Sbjct: 335 SKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVD 394

Query: 591 EA 592
           +A
Sbjct: 395 DA 396



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 167/410 (40%), Gaps = 61/410 (14%)

Query: 190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALE------------VFSALPLMR 237
           EA + F ++   G  PN  TY  +I+ L  LG ++ AL+            VF+  P   
Sbjct: 179 EATKLFMRMQKLGCTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRP--- 235

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA-MRVALERMQEMGFIQGAN 296
                  Y I+++G   V  ++EA  L NEM D G  P      V ++ + + G +  A 
Sbjct: 236 ---NVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAK 292

Query: 297 EFLREMLPDKRIKNVRYYED---GSDDDEDENDDNNSGVR----------IAYGVQLKPW 343
           + L  M+    + N+  Y     G     D N      V           I+Y + +  +
Sbjct: 293 KLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGY 352

Query: 344 LDPKALANTLDEWSPEV-VSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGY 402
                +   +  ++  + V +  D K   T+ ++ K L      + A   F     +P  
Sbjct: 353 CKTLKVEEAMKLFNEMLHVGMWPDVK---TSGVLLKALFLAGKVDDAKELF--RVIKP-- 405

Query: 403 THDVYALEKMLTI-------LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455
               YA+ K L I       L ++G++    +L  +L S  M+L   T   +ID    + 
Sbjct: 406 ----YAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAG 461

Query: 456 KADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVL-EEMIFSGIVP 513
           K + A + F         P +     + YSS++    K K   D  N+L ++M  +G  P
Sbjct: 462 KLETAWELFEKLYEEGIQPDA-----MAYSSMIHGFCK-KGQVDKANILFQKMEENGCSP 515

Query: 514 DVQTFSGLMYHFALQGD-EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           D+ T+S LM  F      EK+VQ L  M+ ++ V PD  ++ ++    CK
Sbjct: 516 DLITYSILMRGFYESNKLEKVVQLLHRMIEKD-VWPDDGIYAIVEDMVCK 564



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 89/469 (18%), Positives = 179/469 (38%), Gaps = 57/469 (12%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           S  S+N +++  AK     +    ++Q+   G  P+  T  ++I  L N+ +++  L   
Sbjct: 90  SIFSFNRLLAGLAKIEHYSQVFSLYKQMHLAGLWPDLLTLNILINCLCNVNRINEGLAAM 149

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER-MQEM 289
           + +           +  L++G     R  EA  L   M+  G  P       L + +  +
Sbjct: 150 AGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLCAL 209

Query: 290 GFIQGANEFLREMLPDKR--IKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPK 347
           G I  A ++ +EML D    + N R             +  +  + I    ++  W +  
Sbjct: 210 GNINIALKWHQEMLNDTSPYVFNCR------------PNVISYSIIIDGLCKVGNWEEAI 257

Query: 348 ALANTLDEWS--PEVV--SLLAD----------AKFVWTTRLVCKVLRHFKSPETAWHFF 393
            L N + +    P VV  S+L D          AK +    +   ++ +  +  +    F
Sbjct: 258 CLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGF 317

Query: 394 CWVA------------YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPF 441
           C V                GY  DV +   ++    +   VE   +L  ++   GM    
Sbjct: 318 CLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDV 377

Query: 442 STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAIN 501
            T  +++    ++ K D A + F   +    P +  K + +    L  L K    F+A+ 
Sbjct: 378 KTSGVLLKALFLAGKVDDAKELFRVIK----PYAMPKDLCICCIFLDGLCKNGYIFEAMK 433

Query: 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           +  E+    +  D++TF  L+      G  +   +LF  + + G++PDA  +  +I  +C
Sbjct: 434 LFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFC 493

Query: 562 K--YLSNSNLM----------PDAATKELLKKSLWKEGRRKEAAAVEER 598
           K   +  +N++          PD  T  +L +  ++  + ++   +  R
Sbjct: 494 KKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLHR 542



 Score = 47.0 bits (110), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 56/130 (43%)

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           +  +NE       L  E++  ++    K GK   A E F ++ +EG  P++  Y+ MI  
Sbjct: 432 MKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHG 491

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
               G++D A  +F  +           Y IL+ GF    + ++   LL+ M +   +P 
Sbjct: 492 FCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLHRMIEKDVWPD 551

Query: 277 RAMRVALERM 286
             +   +E M
Sbjct: 552 DGIYAIVEDM 561


>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
          Length = 793

 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 106/528 (20%), Positives = 206/528 (39%), Gaps = 66/528 (12%)

Query: 109 ATVLAKSQRNHELKTLIG---DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQ 165
           +TV+A   R+  L   +    D+ +   +   V +  L+Q +  +G+    L    E   
Sbjct: 255 STVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMED 314

Query: 166 RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
                   +YN +   YA+ G   EA +    +  +G +PN+ TY  ++    N+G++D 
Sbjct: 315 SGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDE 374

Query: 226 ALEVFSALPLMRIKRTSKQYLI----LVEGFVGVE-RFDEAKSLLNEMRDDGKFPGRAMR 280
           AL +F      R+K+      +    L+ G +G + RF     +L EM   G  P R   
Sbjct: 375 ALALFD-----RMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNR--- 426

Query: 281 VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQL 340
           V    M  +   +G  +++  +L   +   V    D  +           G R  Y  ++
Sbjct: 427 VTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAY--GRCGSR-TYAFKM 483

Query: 341 KPWLDPKALANTLDEWSP--EVVSLLADAKFVWTT--RLVCKVLRH-FKSPETAWHFFCW 395
              +        L  ++    V+S   D    W+T   +V K+L++ FK  + ++     
Sbjct: 484 YDEMISSGFTPCLTTYNALLNVLSRQGD----WSTAQSIVSKMLKNGFKPNDQSYSLLLQ 539

Query: 396 VAYQPGYTHDVYALEKML---TILA-------------RHGHVELVDRLIAKLRSDGMRL 439
              + G    + ++EK +   TI               +   +E V++   ++++ G + 
Sbjct: 540 CYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKP 599

Query: 440 PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL---MLLYSSLLRTLTKCKRD 496
                  ++  Y  +     A + F         I +  L   ++ Y+SL+    K    
Sbjct: 600 DLVIFNSMLAMYAKNGLYSKATEMFDS-------IKQSGLSPDLITYNSLMDMYAKSNES 652

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
           ++A  +L+++  S + PDV +++ ++  F  QG  K  Q++ S +  +G+ P    +  L
Sbjct: 653 WEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTL 712

Query: 557 IQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           +  Y              Y+ + NL P   T   +  S  K  R  EA
Sbjct: 713 VGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDEA 760



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 85/426 (19%), Positives = 155/426 (36%), Gaps = 68/426 (15%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF-EAVETFRQV 198
           +  ++   S +G  E  L  + E R++  + +  +YN+V+ VY + G+++   V    ++
Sbjct: 183 YTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEM 242

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
              G  P+  T + +I      G LD A+  F  L           Y  L++ F     +
Sbjct: 243 RAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNY 302

Query: 259 DEAKSLLNEMRDDGKFPGRAMRVALE-RMQEMGFIQGANEFLREMLPDKRIKNVRYYEDG 317
            EA  +L EM D G  P       L       GF + A + L  M     + N   Y   
Sbjct: 303 TEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTY--- 359

Query: 318 SDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVC 377
              +       N G R+   + L   +        ++ ++     L   ++F     ++ 
Sbjct: 360 ---NTVMTAYANVG-RVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLE 415

Query: 378 KVLRHFKSPE-TAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
           ++ R   +P    W+                    ML +  + G  + V R++  ++S G
Sbjct: 416 EMSRSGCTPNRVTWN-------------------TMLAVCGKRGMEDYVTRVLNGMKSCG 456

Query: 437 MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
           + L   T   +I  YG                                       +C   
Sbjct: 457 VELSRDTYNTLISAYG---------------------------------------RCGSR 477

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
             A  + +EMI SG  P + T++ L+   + QGD    Q + S + +NG +P+   + +L
Sbjct: 478 TYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLL 537

Query: 557 IQAYCK 562
           +Q Y K
Sbjct: 538 LQCYAK 543



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 23/225 (10%)

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
           PG   DV A   +L  L+R G  E   +L A+LR  G+     T  +++D YG   ++  
Sbjct: 174 PGSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWP 233

Query: 460 ALKAFHDDRTLCG-PISKFKLMLLYSSLLRTLTKCKRDF---DAINVLEEMIFSGIVPDV 515
            + A  ++    G     F       +    +  C RD     A+   E++   G VP V
Sbjct: 234 RIVALLEEMRAAGVEPDDF-------TASTVIAACGRDGLLDQAVAFFEDLKARGHVPCV 286

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------Y 563
            T++ L+  F   G+     ++   +  +G +PDA  +  L   Y +             
Sbjct: 287 VTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDT 346

Query: 564 LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
           +++  L+P+  T   +  +    GR  EA A+ +R +K   VP++
Sbjct: 347 MTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNV 391



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 94/509 (18%), Positives = 194/509 (38%), Gaps = 54/509 (10%)

Query: 69  PFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT 123
           P +VT+         A N   AL +++ ++ +     +  T + LA   A++    E   
Sbjct: 284 PCVVTYNALLQVFGKAGNYTEALRVLKEMEDS-GCQPDAVTYNELAGTYARAGFFEEAAK 342

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
            +  ++S   L  +  +  +M  Y+  G ++  L+ ++  ++   + +  +YN++  +  
Sbjct: 343 CLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLG 402

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           K  +    +E   ++   G  PN  T+  M+      G  D    V + +    ++ +  
Sbjct: 403 KKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRD 462

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA-LERMQEMGFIQGANEFLREM 302
            Y  L+  +        A  + +EM   G  P      A L  +   G    A   + +M
Sbjct: 463 TYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKM 522

Query: 303 LPDKRIKN-------VRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDE 355
           L +    N       ++ Y  G +    E+ +      +  G     W+           
Sbjct: 523 LKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEK----EVYVGTIFPSWV----------- 567

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
               ++  L  A F           R  +  E A   F  V  Q GY  D+     ML +
Sbjct: 568 ----ILRTLVIANF---------KCRRLEGVEKA---FQEVKAQ-GYKPDLVIFNSMLAM 610

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
            A++G       +   ++  G+     T   ++D Y  S ++  A K     ++     S
Sbjct: 611 YAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKS-----S 665

Query: 476 KFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA-LQGDEKI 533
           + K  ++ Y++++    K     +A  +L EMI  G+ P V T+  L+  +A L+   + 
Sbjct: 666 QVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEA 725

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            + +  M+  N ++P    ++ ++ +YCK
Sbjct: 726 REVVNYMIHHN-LKPMELTYRRVVDSYCK 753



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 5/192 (2%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A++  E LK+  +      T +AL  V  K+    E   ++ ++  S     +V +  
Sbjct: 268 DQAVAFFEDLKARGHVPC-VVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNE 326

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L   Y+ +G  E      +    +  L +T +YN VM+ YA  G+  EA+  F ++   G
Sbjct: 327 LAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNG 386

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI--KRTSKQYLILVEGFVGVERFDE 260
            +PN  TY ++   L    +  + LE+   +        R +   ++ V G  G+E  D 
Sbjct: 387 YVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGME--DY 444

Query: 261 AKSLLNEMRDDG 272
              +LN M+  G
Sbjct: 445 VTRVLNGMKSCG 456



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 13/161 (8%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE------SYNIVMSVYAKTGKNFEA 191
           + + +LM  Y+ S +      +W   +   +L S++      SYN V++ + K G   EA
Sbjct: 637 ITYNSLMDMYAKSNE------SWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEA 690

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
                ++I +G  P   TY  ++    +L   + A EV + +    +K     Y  +V+ 
Sbjct: 691 QRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDS 750

Query: 252 FVGVERFDEAKSLLNEMRD-DGKFPGRAMRVALERMQEMGF 291
           +   +R+DEA+  L+E+ D D  F  +   +   R+++  F
Sbjct: 751 YCKAKRYDEAREFLSEISDTDQNFDQKLQHMLEARIKDAQF 791


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 99/494 (20%), Positives = 191/494 (38%), Gaps = 57/494 (11%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V + NL+      G+L+       +  +     +  +Y+++++   K  K  EA    ++
Sbjct: 282 VTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKE 341

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
            +++G  PN   Y  +I+    +G L  AL +   +    I   S     +++GF  + +
Sbjct: 342 TLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQ 401

Query: 258 FDEAKSLLNEMRDDG--KFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
            ++A+ +L EM   G    PG A    +  +      + A  FLREML    ++N+R  +
Sbjct: 402 MEQAECILEEMLSRGFSINPG-AFTTIIHWLCMNSRFESALRFLREML----LRNMRPND 456

Query: 316 D------GSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF 369
                  G    E ++ D          V+L   L  K     L   +  +  L      
Sbjct: 457 GLLTTLVGGLCKEGKHSD---------AVELWFRLLEKGFGANLVTTNALIHGLCKTGNM 507

Query: 370 VWTTRLVCKVL-RHFKSPETAWHFFCWVAYQPGYTH----------------DVYALEKM 412
               RL+ K+L R F   +  ++       + G                   D +    +
Sbjct: 508 QEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLL 567

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
           +  + R G ++    L  + +S  +     T  ++ID Y  + K +   K F +  T   
Sbjct: 568 IHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLT--- 624

Query: 473 PISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
                +L  ++Y++L+R   +     +A  + ++M   GI P   T+S L++     G  
Sbjct: 625 --QNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRM 682

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELL 579
           +  + L   +R+ G+ P+   +  LI  YCK             +S+ ++ P+  T  ++
Sbjct: 683 EDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVM 742

Query: 580 KKSLWKEGRRKEAA 593
                K G  K AA
Sbjct: 743 IDGYSKSGDMKTAA 756



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 88/210 (41%), Gaps = 1/210 (0%)

Query: 74  HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKF 133
           H L    N   A+ +++ +     F  ++ T + L +   K  +  E   L G++     
Sbjct: 499 HGLCKTGNMQEAVRLLKKMLER-GFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGI 557

Query: 134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE 193
              +  +  L+      G L+  ++ WNE + R  + +  +Y +++  Y K  K  E  +
Sbjct: 558 EPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEK 617

Query: 194 TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
            F +++ +    NS  Y  +I      G    A ++   +    I  T+  Y  L+ G  
Sbjct: 618 LFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMC 677

Query: 254 GVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
            + R ++AK L++EMR +G  P      AL
Sbjct: 678 NIGRMEDAKCLIDEMRKEGLLPNVVCYTAL 707



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 107/550 (19%), Positives = 199/550 (36%), Gaps = 60/550 (10%)

Query: 67  LDPFIVT-----HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHEL 121
           + P +VT     H L    N D A    E +  +   +    T   L   L K ++ +E 
Sbjct: 277 VSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKD-GVNATLITYSVLINGLMKLEKFNEA 335

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
            +++ +     F    V +  L+  Y   G+L   L    +   +    ++ + N ++  
Sbjct: 336 NSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQG 395

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
           + K G+  +A     +++  G   N   +T +I  L    + +SAL     + L  ++  
Sbjct: 396 FCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPN 455

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLR 300
                 LV G     +  +A  L   + + G         AL   + + G +Q A   L+
Sbjct: 456 DGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLK 515

Query: 301 EMLP-----DKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDE 355
           +ML      DK   N        +   +E      G ++  G  +K  ++P      L  
Sbjct: 516 KMLERGFVLDKITYNTLISGCCKEGKVEE------GFKLR-GEMVKQGIEPDTFTYNLLI 568

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
                +  L +A  +W     CK                          +VY    M+  
Sbjct: 569 HGMCRIGKLDEAVNLWNE---CK--------------------SRDLVPNVYTYGVMIDG 605

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
             +   +E  ++L  +L +  + L       +I  Y  +     A K   D R+   P +
Sbjct: 606 YCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPT 665

Query: 476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD-EKIV 534
                  YSSL+  +    R  DA  +++EM   G++P+V  ++ L+  +   G  +K+V
Sbjct: 666 TAT----YSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVV 721

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKS 582
             L  M   + + P+   + V+I  Y K             +    ++PD  T  +L   
Sbjct: 722 NVLQEMSSYD-IHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNG 780

Query: 583 LWKEGRRKEA 592
             KEG+ +E 
Sbjct: 781 FCKEGKIEEG 790



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/282 (20%), Positives = 106/282 (37%), Gaps = 24/282 (8%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           ++ H +      D A+++    KS  +   N  T   +     K+ +  E + L  ++ +
Sbjct: 566 LLIHGMCRIGKLDEAVNLWNECKSR-DLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLT 624

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                 SV +  L++ Y  +G+        ++ R +    +T +Y+ ++      G+  +
Sbjct: 625 QNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMED 684

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A     ++  EG +PN   YT +I     LG++D  + V   +    I      Y ++++
Sbjct: 685 AKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMID 744

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKN 310
           G+        A  LL+EM   G  P       L            N F +E   ++  K 
Sbjct: 745 GYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVL-----------TNGFCKEGKIEEGFKI 793

Query: 311 VRYY-EDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALAN 351
             Y  ++G   DE           I Y   +  W  P AL N
Sbjct: 794 CDYMSQEGLPLDE-----------ITYTTLVHGWQQPSALTN 824



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 49/101 (48%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           ++  ++ + K GK  +A++ F  +   G  PN  TY  +I  L   G LD A      + 
Sbjct: 249 FSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMV 308

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              +  T   Y +L+ G + +E+F+EA S+L E  + G  P
Sbjct: 309 KDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTP 349



 Score = 39.3 bits (90), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 84/199 (42%), Gaps = 10/199 (5%)

Query: 368 KFVWTTRLVCKVLRH--FKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELV 425
           K V+ T   C  L     K+ E    ++ +   + G + DVY     +    + G VE  
Sbjct: 206 KGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQGVSPDVYLFSTAINAFCKGGKVEDA 265

Query: 426 DRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA--DAALKAFHDDRTLCGPISKFKLMLLY 483
            +L   +   G+     T   +I  +G+ K    D A + F +     G  +    ++ Y
Sbjct: 266 IQLFFDMEKLGVSPNVVTYNNLI--HGLCKHGNLDEAFR-FKEKMVKDGVNAT---LITY 319

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           S L+  L K ++  +A +VL+E +  G  P+   ++ L+  +   G+     ++   +  
Sbjct: 320 SVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVS 379

Query: 544 NGVEPDAYMFKVLIQAYCK 562
            G+ P++     +IQ +CK
Sbjct: 380 KGINPNSVTLNSIIQGFCK 398


>gi|115449873|ref|NP_001048572.1| Os02g0824000 [Oryza sativa Japonica Group]
 gi|113538103|dbj|BAF10486.1| Os02g0824000 [Oryza sativa Japonica Group]
          Length = 1013

 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 122/570 (21%), Positives = 220/570 (38%), Gaps = 58/570 (10%)

Query: 69  PFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDI 128
           PFIV +        + A  + E +  N     +  TL AL   L +  R  E   L  ++
Sbjct: 244 PFIVYYC--RTKGVEEAFDLYEGMVRN-GVLLDVVTLSALVAGLCRDGRFSEAYALFREM 300

Query: 129 SSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN 188
                    V +  L+   + +G  + +LS   E   R  ++   +Y  +M    K GK 
Sbjct: 301 DKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKT 360

Query: 189 FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
            E  +T R  + +   PN  TYTV+I+ L     +D A +V   +    I      +  +
Sbjct: 361 DEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSV 420

Query: 249 VEGFVGVERFDEAKSLLNEMRD--------------DGKFPGRAMRVALERMQEMGFIQG 294
           + GFV     D+A      M++              DG F  +    ALE   +M   +G
Sbjct: 421 INGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDM-LCEG 479

Query: 295 ANEFLREMLPDKRIKNVRYYEDGSDDDEDE--NDDNNSGVRIAYGVQLKPWLDPKALAN- 351
               + + + D  +  +R  ++G  ++      D + SG+ + + V     +D    A  
Sbjct: 480 VK--VNKFIVDSLVNGLR--QNGKIEEAMALFKDASGSGLSLDH-VNYTTLIDGLFKAGD 534

Query: 352 --TLDEWSPEVV--SLLADAKFVWTTRLVC-KVLRHFKSPETAWHFFCWVAYQPGYTHDV 406
             T  ++  E++  ++L DA  V+   + C  +L  FK  ++    F       G   D 
Sbjct: 535 MPTAFKFGQELMDRNMLPDA-VVYNVFINCLCMLGKFKEAKS----FLTEMRNMGLKPDQ 589

Query: 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR-LIIDFYGISKKADAALKAFH 465
                M+    R G      +L+ +++   ++    T   L+   +G      A  K   
Sbjct: 590 STYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKA--KYLL 647

Query: 466 DDRTLCG--PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
           ++    G  P S     L +  +L+  ++ +R    +++ E M+ +G+  D+  ++ L+ 
Sbjct: 648 NEMVSAGFSPSS-----LTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQ 702

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--YLSNS----------NLMP 571
                G  +    +   +  +G+ PD   F  LI  +CK  +L N+          N+ P
Sbjct: 703 VLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISP 762

Query: 572 DAATKELLKKSLWKEGRRKEAAAVEERCEK 601
           + AT   L   L   GR  EA  V    EK
Sbjct: 763 NIATFNTLLGGLESVGRIGEAGTVLIEMEK 792



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 88/220 (40%), Gaps = 6/220 (2%)

Query: 61  LLNDRLLDPFIVTHA-----LRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKS 115
           ++ +R ++P +VT+             D+AL +   +        N+  + +L   L ++
Sbjct: 439 MMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCE-GVKVNKFIVDSLVNGLRQN 497

Query: 116 QRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
            +  E   L  D S S      VN+  L+     +GD+        E   R  L     Y
Sbjct: 498 GKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVY 557

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           N+ ++     GK  EA     ++ + G  P+  TY  MI      G+   AL++   + +
Sbjct: 558 NVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKM 617

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             IK     Y  LV G  G    ++AK LLNEM   G  P
Sbjct: 618 SSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSP 657



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 95/481 (19%), Positives = 174/481 (36%), Gaps = 68/481 (14%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + +  L+  Y   GD    LS  +    +   +    YN +++ + + G+    V+  R 
Sbjct: 170 IGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQ----VDAARG 225

Query: 198 VID----EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
           V+D     G  PN  TYT  I +      ++ A +++  +    +         LV G  
Sbjct: 226 VLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLC 285

Query: 254 GVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVR 312
              RF EA +L  EM   G  P       L + + + G  +     L EM+    + ++ 
Sbjct: 286 RDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLV 345

Query: 313 YYEDGSD--DDEDENDDNNSGVRIAYGVQLKP-------WLDPKALANTLDEWSPEVVSL 363
            Y    D    + + D+    +R A    L P        +D    A+ +DE   E V L
Sbjct: 346 TYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDE--AEQVLL 403

Query: 364 LADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVE 423
             + K +              SP                  +V     ++    + G ++
Sbjct: 404 EMEEKSI--------------SP------------------NVVTFSSVINGFVKRGLLD 431

Query: 424 LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLY 483
                   ++  G+     T   +ID +   +  DAAL+ +HD   LC  +   K ++  
Sbjct: 432 KATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHD--MLCEGVKVNKFIV-- 487

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
            SL+  L +  +  +A+ + ++   SG+  D   ++ L+      GD     K    +  
Sbjct: 488 DSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMD 547

Query: 544 NGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKE 591
             + PDA ++ V I   C              + N  L PD +T   +  S  ++G   +
Sbjct: 548 RNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAK 607

Query: 592 A 592
           A
Sbjct: 608 A 608



 Score = 46.2 bits (108), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 86/208 (41%), Gaps = 20/208 (9%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           +L  L+ H H   V   +A++   G  +PF  + +     G+ +       A   DR   
Sbjct: 109 LLAALSDHAHAPAV---LAEMCKRG--VPFDGVTVNTLLAGLCRNGQVDAAAALADRG-- 161

Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
           G I    + + +++L+    +      A++V + M   G+  DV  ++ L+  F   G  
Sbjct: 162 GGIHALDV-IGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQV 220

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELL 579
              + +  M+++ GV+P+   +   I  YC+             +  + ++ D  T   L
Sbjct: 221 DAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSAL 280

Query: 580 KKSLWKEGRRKEAAAVEERCEKINDVPS 607
              L ++GR  EA A+    +K+   P+
Sbjct: 281 VAGLCRDGRFSEAYALFREMDKVGAAPN 308



 Score = 42.7 bits (99), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y+I+ + + K     EA+  + +++ +G +P   TY  +I      G +  A E+F  +
Sbjct: 801 TYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDM 860

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
               +  TS  Y ILV G+  + R  E KS
Sbjct: 861 QKRGVHPTSCTYDILVSGWYDLAR--EQKS 888



 Score = 38.9 bits (89), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 96/503 (19%), Positives = 180/503 (35%), Gaps = 37/503 (7%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
           N S N  T   L   L K+    E + ++ ++         V F +++  +   G L+  
Sbjct: 374 NLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKA 433

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
                  ++R    +  +Y  ++  + K      A+E +  ++ EG   N      ++  
Sbjct: 434 TEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNG 493

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
           L   GK++ A+ +F       +      Y  L++G         A     E+ D    P 
Sbjct: 494 LRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPD 553

Query: 277 RAM-RVALERMQEMGFIQGANEFLREML-----PDKRIKN---VRYYEDGSDDDEDE--N 325
             +  V +  +  +G  + A  FL EM      PD+   N   V +   G      +  +
Sbjct: 554 AVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLH 613

Query: 326 DDNNSGVR---IAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF---VWTTRLVCKV 379
           +   S ++   I Y   +       A+     E +  +++ +  A F     T R V + 
Sbjct: 614 EMKMSSIKPNLITYNTLVAGLFGTGAV-----EKAKYLLNEMVSAGFSPSSLTHRRVLQA 668

Query: 380 LRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
               +  +       W+    G   D+     +L +L  HG       ++ ++   G+  
Sbjct: 669 CSQSRRLDVILDIHEWM-MNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAP 727

Query: 440 PFSTIRLIIDFYGISKKADAALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDF 497
              T   +I  +  S   D A   +     + +   I+ F      ++LL  L    R  
Sbjct: 728 DTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATF------NTLLGGLESVGRIG 781

Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           +A  VL EM  SG+ P+  T+  L      Q ++    +L+  +   G  P    +  LI
Sbjct: 782 EAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALI 841

Query: 558 QAYCKYLSNSNLMPDAATKELLK 580
             + K    + +M  A  KEL K
Sbjct: 842 SDFTK----AGMMTQA--KELFK 858


>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 917

 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 80/159 (50%), Gaps = 4/159 (2%)

Query: 404 HDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKA 463
            DV++   +L  + + G ++L   ++A++ +  +     +   +ID +  + + D AL  
Sbjct: 372 QDVFSYNTLLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNL 431

Query: 464 FHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
           F + R L   + +      Y++LL   TK  R  +A+++L EM   GI  DV T++ L+ 
Sbjct: 432 FGEMRYLNIALDRVS----YNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLG 487

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            +  QG    V+K+F+ +++  V P+   +  LI  Y K
Sbjct: 488 GYGKQGKYDEVKKVFAEMKREHVLPNLLTYSTLIDGYSK 526



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 85/192 (44%), Gaps = 1/192 (0%)

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           ++  + + + +   V++  ++  ++ +G  +  L+ + E R     L   SYN ++S+Y 
Sbjct: 396 ILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDRVSYNTLLSIYT 455

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           K G++ EA++  R++   G   +  TY  ++      GK D   +VF+ +    +     
Sbjct: 456 KVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVLPNLL 515

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREM 302
            Y  L++G+     + EA  +  E +  G      +  AL + + + G +  A   + EM
Sbjct: 516 TYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEM 575

Query: 303 LPDKRIKNVRYY 314
             +    NV  Y
Sbjct: 576 TKEGISPNVVTY 587



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 59/135 (43%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + F +L+   S  G  E   + ++E   R       SYN ++    K G+   A E   Q
Sbjct: 340 ITFNSLLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQ 399

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +  +  +PN  +Y+ +I+     G+ D AL +F  +  + I      Y  L+  +  V R
Sbjct: 400 MPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDRVSYNTLLSIYTKVGR 459

Query: 258 FDEAKSLLNEMRDDG 272
            +EA  +L EM   G
Sbjct: 460 SEEALDILREMASVG 474



 Score = 45.8 bits (107), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 41/197 (20%), Positives = 79/197 (40%), Gaps = 23/197 (11%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           M++ L R+G V +  R+     S G          +I  YG S   + A+  F+      
Sbjct: 239 MISTLGRYGKVTIAKRIFETAFSGGYGNTVYAFSALISAYGRSGLHEEAISVFNS----- 293

Query: 472 GPISKFKL---MLLYSSLLRTLTKCKRDFDAI-NVLEEMIFSGIVPDVQTFSGLMYHFAL 527
             + ++ L   ++ Y++++    K   +F  +    +EM  + + PD  TF+ L+   + 
Sbjct: 294 --MKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNCVQPDRITFNSLLAVCSR 351

Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAAT 575
            G  +  + LF  +    +E D + +  L+ A CK             +    +MP+  +
Sbjct: 352 GGLWEAARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPAKRIMPNVVS 411

Query: 576 KELLKKSLWKEGRRKEA 592
              +     K GR  EA
Sbjct: 412 YSTVIDGFAKAGRFDEA 428



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 32/172 (18%), Positives = 76/172 (44%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T ++L  V ++       + L  ++S+ +      ++  L+      G ++L      + 
Sbjct: 341 TFNSLLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQM 400

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
             +  + +  SY+ V+  +AK G+  EA+  F ++       +  +Y  ++     +G+ 
Sbjct: 401 PAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDRVSYNTLLSIYTKVGRS 460

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           + AL++   +  + IK+    Y  L+ G+    ++DE K +  EM+ +   P
Sbjct: 461 EEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVLP 512



 Score = 40.4 bits (93), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 32/156 (20%), Positives = 70/156 (44%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
           N + ++ + + L ++  K  R+ E   ++ +++S       V +  L+  Y   G  + V
Sbjct: 439 NIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEV 498

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
              + E ++   L +  +Y+ ++  Y+K G   EA+E FR+    G   +   Y+ +I+ 
Sbjct: 499 KKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDA 558

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
           L   G + SA+ +   +    I      Y  +++ F
Sbjct: 559 LCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAF 594


>gi|297744958|emb|CBI38550.3| unnamed protein product [Vitis vinifera]
          Length = 795

 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 89/444 (20%), Positives = 180/444 (40%), Gaps = 37/444 (8%)

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
           K L+G+IS        + +  L+  Y  S  LE  L  ++E   ++ +    +Y  +M+ 
Sbjct: 72  KKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNG 131

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
             K+GK  EA   FR++ + G +PN  +Y  +I+ L   G +  A  +   + +  I   
Sbjct: 132 LCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFD 191

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLR 300
              Y  L++G       + A+ +   + ++   P      AL +   ++G +      L+
Sbjct: 192 VVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQ 251

Query: 301 EMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEV 360
           EM       NV                      I Y   +  +     L   +D     V
Sbjct: 252 EMEEKHIFPNV----------------------IVYSSIVDGYTKKGLLNEAMDVMRKMV 289

Query: 361 VSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQP-GYTHDVYALEKMLTILARH 419
              +    FV+ T     +  +FK+ +       +   +  G   + + ++  +  L R 
Sbjct: 290 QRNILPNVFVYGTL----IDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRS 345

Query: 420 GHVELVDRLIAKLRSDGMRLP--FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKF 477
           G +E  D L   + S G+ LP   +   ++  F+   K++D    AF+  + +    S F
Sbjct: 346 GRMEEADELFKDMMSRGL-LPDRVNYTSMMDGFFKAGKESD----AFNIAQEMTEKSSGF 400

Query: 478 KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL 537
            + + Y+ L+  L K  + +++ +    M   G+ PD  TF+ ++  +  +G+     KL
Sbjct: 401 DV-VAYNVLINGLFKLGK-YESESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKL 458

Query: 538 FSMVRQNGVEPDAYMFKVLIQAYC 561
            + ++  G++P++    +L+Q  C
Sbjct: 459 LNEMKSYGLKPNSITCNILVQRLC 482



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 12/121 (9%)

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A+ +LE M   G  PD+ T++ LM  F   GD    +KL   +    +EP+   +  LI 
Sbjct: 36  AVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYTTLID 95

Query: 559 AYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
           AYCK             ++  +L+PD  T   +   L K G+ +EA +V    E++  VP
Sbjct: 96  AYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVP 155

Query: 607 S 607
           +
Sbjct: 156 N 156



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 6/136 (4%)

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           N+ ++R  + +  +Y+I++S + K G   E V+ + ++I +G +P +RTY V+I      
Sbjct: 635 NQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKG 694

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR 280
            K+  A E+   + +  I   S  Y IL+ G+  + +  E    L        +   A R
Sbjct: 695 KKMSQAKELMQEMQVRGIPPNSSTYDILICGWYKLSKQPELNKSLKR-----SYQAEAKR 749

Query: 281 VALERMQEMGFIQGAN 296
           +  E M E GFI   N
Sbjct: 750 L-FEEMNEKGFIPCEN 764



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 4/192 (2%)

Query: 85  ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
           AL + + +KS      N   + +    L +S R  E   L  D+ S   L   VN+ ++M
Sbjct: 316 ALDLFKEMKSR-GLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMM 374

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE-GA 203
             +  +G      +   E  +++      +YN++++   K GK +E+ E+F   + + G 
Sbjct: 375 DGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGK-YES-ESFHTGMRQLGL 432

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
            P+S T+  MI      G L +AL++ + +    +K  S    ILV+        ++   
Sbjct: 433 APDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMD 492

Query: 264 LLNEMRDDGKFP 275
           LLN+M   G  P
Sbjct: 493 LLNDMLVMGFHP 504



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 94/492 (19%), Positives = 185/492 (37%), Gaps = 77/492 (15%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           Y  +M    K G    A + F+ +++E  +PN  TY+ +I+    LG ++    +   + 
Sbjct: 195 YTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEME 254

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD--------------DGKFPGRAMR 280
              I      Y  +V+G+      +EA  ++ +M                DG F      
Sbjct: 255 EKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRG 314

Query: 281 VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGV---RIAYG 337
           +AL+  +EM   +G  E     + D  + N++      + DE   D  + G+   R+ Y 
Sbjct: 315 IALDLFKEMKS-RGLEE--NNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYT 371

Query: 338 VQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVA 397
             +  +      ++  +  + E+    +    V    L+  + +  K    ++H      
Sbjct: 372 SMMDGFFKAGKESDAFN-IAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESFH---TGM 427

Query: 398 YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR------------------- 438
            Q G   D      M+    + G++    +L+ +++S G++                   
Sbjct: 428 RQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEI 487

Query: 439 ------------LPF----STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLL 482
                       + F    +T + ++D    S++AD  L   HD   L G   K  L   
Sbjct: 488 EKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILH-MHDQ--LVGMGVKLDLST- 543

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++L+ T  +      A  V ++M+  GI+ D+ T++ L++ + +    K    + S + 
Sbjct: 544 YNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQML 603

Query: 543 QNGVEPDAYMFKVLI------------QAYCKYLSNSNLMPDAATKELLKKSLWKEGRRK 590
             GV P+   + +L+                  +    L+P+A T ++L     K G  K
Sbjct: 604 TEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMK 663

Query: 591 EAAAVEERCEKI 602
           E   V+  CE I
Sbjct: 664 E--CVKLYCEMI 673



 Score = 47.0 bits (110), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 29/149 (19%), Positives = 65/149 (43%)

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
           D+     L   + +  L+  Y  S  L+   +  ++        + E+YNI++   +   
Sbjct: 566 DMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAAR 625

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
              EA     Q+ + G +PN+ TY +++     +G +   ++++  +        ++ Y 
Sbjct: 626 LIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYN 685

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +L+  F   ++  +AK L+ EM+  G  P
Sbjct: 686 VLISCFAKGKKMSQAKELMQEMQVRGIPP 714



 Score = 46.2 bits (108), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 59/139 (42%)

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
           +F  L+  Y  +G++   +      +         +YN +M+ + K G  F A +   ++
Sbjct: 19  HFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEI 78

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
                 PN  TYT +I+       L+ AL ++  + +  +      Y  ++ G     + 
Sbjct: 79  SLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKV 138

Query: 259 DEAKSLLNEMRDDGKFPGR 277
           +EAKS+  EM + G  P R
Sbjct: 139 EEAKSVFREMEEVGVVPNR 157



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 77/195 (39%), Gaps = 1/195 (0%)

Query: 81  NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNF 140
           N  +AL ++  +KS      N  T + L   L  +    +   L+ D+    F       
Sbjct: 451 NLGNALKLLNEMKSY-GLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTH 509

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
             ++   S S   +++L   ++       L   +YN ++S + + G    A   F+ ++ 
Sbjct: 510 KAVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMG 569

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
           +G + +  TY  +I        L  A  V S +    +    + Y IL+ G        E
Sbjct: 570 KGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKE 629

Query: 261 AKSLLNEMRDDGKFP 275
           A  L+N+M++ G  P
Sbjct: 630 AAGLVNQMKERGLVP 644



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 62/143 (43%), Gaps = 1/143 (0%)

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           N Y+      S E +N+++  Y + G+   AVE    +  EG  P+  TY  ++     +
Sbjct: 6   NTYQHPEIRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKI 65

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR 280
           G L +A ++   + L+ ++     Y  L++ +   +  ++A  + +EM      P     
Sbjct: 66  GDLFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTY 125

Query: 281 VA-LERMQEMGFIQGANEFLREM 302
              +  + + G ++ A    REM
Sbjct: 126 TCIMNGLCKSGKVEEAKSVFREM 148



 Score = 42.7 bits (99), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 76/185 (41%), Gaps = 33/185 (17%)

Query: 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK 476
            R+G +     L+  ++++G      T   +++  G  K  D         + L G IS 
Sbjct: 28  CRNGEISRAVELLEGMKTEGPAPDIVTYNTLMN--GFCKIGD-----LFTAKKLMGEISL 80

Query: 477 FKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
             L   ++ Y++L+    K +   DA+ + +EM    +VPDV T++ +M      G  + 
Sbjct: 81  VNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEE 140

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
            + +F  + + GV P+ + +  LI                        SL+KEG   EA 
Sbjct: 141 AKSVFREMEEVGVVPNRFSYATLID-----------------------SLFKEGNVAEAF 177

Query: 594 AVEER 598
            ++ R
Sbjct: 178 VLQGR 182



 Score = 40.0 bits (92), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 26/116 (22%), Positives = 55/116 (47%)

Query: 99  SHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLS 158
           S N  T + L   L+ ++   E   L+  +     +  +  +  L+  +   G+++  + 
Sbjct: 608 SPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVK 667

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
            + E   +  +  T +YN+++S +AK  K  +A E  +++   G  PNS TY ++I
Sbjct: 668 LYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILI 723


>gi|225464138|ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100
           [Vitis vinifera]
 gi|296087974|emb|CBI35257.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 89/201 (44%), Gaps = 1/201 (0%)

Query: 77  RSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNV 136
           +++   D+AL I   +  N     +  T   L   L +  +  E K L  ++ +      
Sbjct: 167 KNSGTMDAALRIFREM-PNRGCPPDSYTYGTLINGLCRLGKIGEAKELFKEMETKACSPT 225

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
            V + +L+     S DL+  +    E   +    +  +Y+ +M  + K+G +  A+E   
Sbjct: 226 VVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLD 285

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
            ++    +PN  TY+ ++  L   GKL  A+E+   + L  ++  +  Y  ++ GF  + 
Sbjct: 286 MMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDIC 345

Query: 257 RFDEAKSLLNEMRDDGKFPGR 277
           +F EA + L+EM   G  P R
Sbjct: 346 KFHEAANFLDEMVLGGISPNR 366



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 1/124 (0%)

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAK-TGKNFEAVETFRQVIDEGAIPNSRTYT 211
           L+L L  +   R+     S  S N+++    K +G    A+  FR++ + G  P+S TY 
Sbjct: 136 LKLALRFYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSYTYG 195

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
            +I  L  LGK+  A E+F  +       T   Y  L+ G    +  D A  LL EM   
Sbjct: 196 TLINGLCRLGKIGEAKELFKEMETKACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMASK 255

Query: 272 GKFP 275
           G  P
Sbjct: 256 GIKP 259



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 92/228 (40%), Gaps = 18/228 (7%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID-FYGISKKADAALKAFHDDRTL 470
           +  IL     ++L  R    +R  G+    +++ ++I      S   DAAL+ F +    
Sbjct: 126 VFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNR 185

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
             P   +     Y +L+  L +  +  +A  + +EM      P V T++ L++      D
Sbjct: 186 GCPPDSYT----YGTLINGLCRLGKIGEAKELFKEMETKACSPTVVTYTSLIHGLCQSKD 241

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNL------------MPDAATKEL 578
                +L   +   G++P+ + +  L+  +CK   +S              +P+  T   
Sbjct: 242 LDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYST 301

Query: 579 LKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAVSSADLTRVH 626
           L   L KEG+ +EA  + +R +     P   L G I +    D+ + H
Sbjct: 302 LVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIIS-GFCDICKFH 348


>gi|414871694|tpg|DAA50251.1| TPA: hypothetical protein ZEAMMB73_705675 [Zea mays]
          Length = 1161

 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 88/437 (20%), Positives = 162/437 (37%), Gaps = 46/437 (10%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN +++ + + GK   A   F  ++ +  +P+  TYT MI+      ++D AL + S +
Sbjct: 332 TYNTLINGFFREGKINHARYVFNHMLRQNLVPSVATYTTMIDGYCRNRRIDKALSILSEM 391

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR-VALERMQEMGFI 292
            +  +  +   Y  L+ G+  V     A  L+ +++  G    + MR + ++   ++G I
Sbjct: 392 QITGVMPSELTYSALLNGYCKVSMLGPAIYLMEDLKSRGITINKTMRTILIDGFCQVGEI 451

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
             A + L+ M           +EDG D D            I Y   +        +  T
Sbjct: 452 SKAKQILKSM-----------FEDGIDPDV-----------ITYSALINGMCRMAKMHET 489

Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
            +  S    S +     ++TT L+C   +     E   HF     Y+ G   +      +
Sbjct: 490 KEILSRMQKSGILPNDVLYTT-LICYYCKAGYVKEALKHFV--DIYRRGLVANPVIHNAL 546

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL--IIDFYGISKKADAALKAFHDDRTL 470
           L    R G +   +     +    M + F ++    IID Y        A   + DD   
Sbjct: 547 LHAFYREGMITEAEHFRQYMSR--MNISFDSVSFNRIIDSYCHRGNIVGAFSVY-DDMVR 603

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
            G       +  Y +LLR L +      A   +  ++      D +TF+ L+      G 
Sbjct: 604 YGYSPN---VCTYQNLLRGLCQGGHLVQARQFMSCLLDIPFAIDEKTFNALLLGICRYGT 660

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKEL 578
                 L   + +N   PD + + +L+  +C+             +    ++PD      
Sbjct: 661 LDEALDLCEKMIKNNCLPDIHTYTILLSGFCRKGKILPALVILQMMLEKGVVPDTVAYTC 720

Query: 579 LKKSLWKEGRRKEAAAV 595
           L   L  EG+ K A+ V
Sbjct: 721 LLNGLINEGQVKAASYV 737



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 137/338 (40%), Gaps = 24/338 (7%)

Query: 33   LALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEAL 92
            L L L    LID   +AV+      L  +  DRL+   ++T A        +AL +   +
Sbjct: 827  LILGLSECGLID---IAVKFLEKMVLEGIFPDRLVFDILIT-AFSEKSKMHNALQVFNCM 882

Query: 93   KSNPNFSHNQSTLHALAT-VLAKSQRNHELKTLIGDISSSKFLNVSV-----NFMNLMQW 146
            K   + S +  T  A+   ++ K   +H  K L       + L V +     +++ L+  
Sbjct: 883  KW-LHMSPSSKTFSAMINGLIRKGYLDHSHKVL------HEMLQVGLQPNHTHYIALVNA 935

Query: 147  YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206
                G+++       E +    + +  + + ++    + GK  EAV  F  ++  G +P 
Sbjct: 936  KCRVGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLEEAVIVFSSMMRSGMVPT 995

Query: 207  SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
              T+T ++  L    K+  AL +   + L R++     Y +L+ G    +   +A  L  
Sbjct: 996  VATFTTLMHSLCKESKIADALHLKRLMELCRLRVDVVSYNVLITGLCKDKHISDALDLYG 1055

Query: 267  EMRDDGKFPGRAMRVALE-RMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDE- 324
            EM+  G +P     + L   M   G +Q   E L ++     I   +  E+     ED  
Sbjct: 1056 EMKSKGLWPNITTYITLTGAMYSTGRVQNGEELLEDIEERGLIPAYKQPENLERRMEDAI 1115

Query: 325  ---NDDNNSGVRIAY-GVQLKPWLDPKALANTLDEWSP 358
               N   N    + + GV+L P LDPK + +   + +P
Sbjct: 1116 IRLNMIRNCRKEVPFRGVELLP-LDPKPVCSAASDCNP 1152



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 96/522 (18%), Positives = 196/522 (37%), Gaps = 123/522 (23%)

Query: 140  FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
            F  L+      G L+  L    +  +   L    +Y I++S + + GK   A+   + ++
Sbjct: 648  FNALLLGICRYGTLDEALDLCEKMIKNNCLPDIHTYTILLSGFCRKGKILPALVILQMML 707

Query: 200  DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL--------------PLMR-------- 237
            ++G +P++  YT ++  L+N G++ +A  VF  +               LM         
Sbjct: 708  EKGVVPDTVAYTCLLNGLINEGQVKAASYVFHEIICKEGLYADCIAYNSLMNGYLKSRNV 767

Query: 238  --IKR------------TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVA 282
              IKR             S  Y IL+ G+V   +F ++  L   M   G  P     R+ 
Sbjct: 768  NTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNVTYRLL 827

Query: 283  LERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKP 342
            +  + E G I  A +FL +M+ +    +                      R+ + + +  
Sbjct: 828  ILGLSECGLIDIAVKFLEKMVLEGIFPD----------------------RLVFDILITA 865

Query: 343  WLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLR--HFKSPETAWHFFCWVAYQP 400
            + +   + N L  ++      ++ +   ++  ++  ++R  +        H    V  QP
Sbjct: 866  FSEKSKMHNALQVFNCMKWLHMSPSSKTFSA-MINGLIRKGYLDHSHKVLHEMLQVGLQP 924

Query: 401  GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
             +TH +     ++    R G ++   RL  ++++ G+ +P                A+ A
Sbjct: 925  NHTHYI----ALVNAKCRVGEIDRAFRLKEEMKAIGI-VP----------------AEVA 963

Query: 461  LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
              +       CG +   + ++++SS++R                    SG+VP V TF+ 
Sbjct: 964  ESSIIRGLCRCGKLE--EAVIVFSSMMR--------------------SGMVPTVATFTT 1001

Query: 521  LMYHFALQ---GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLS 565
            LM+    +    D   +++L  + R   +  D   + VLI   CK             + 
Sbjct: 1002 LMHSLCKESKIADALHLKRLMELCR---LRVDVVSYNVLITGLCKDKHISDALDLYGEMK 1058

Query: 566  NSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
            +  L P+  T   L  +++  GR +    + E  E+   +P+
Sbjct: 1059 SKGLWPNITTYITLTGAMYSTGRVQNGEELLEDIEERGLIPA 1100



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/170 (20%), Positives = 77/170 (45%)

Query: 114 KSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE 173
           KS+  + +K ++ D+  ++    S ++  LM  Y   G     L  +    ++       
Sbjct: 763 KSRNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNV 822

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y +++   ++ G    AV+   +++ EG  P+   + ++I       K+ +AL+VF+ +
Sbjct: 823 TYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDRLVFDILITAFSEKSKMHNALQVFNCM 882

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
             + +  +SK +  ++ G +     D +  +L+EM   G  P     +AL
Sbjct: 883 KWLHMSPSSKTFSAMINGLIRKGYLDHSHKVLHEMLQVGLQPNHTHYIAL 932



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 1/166 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
             +  L+  +   G +      +N   ++  + S  +Y  ++  Y +  +  +A+    +
Sbjct: 331 CTYNTLINGFFREGKINHARYVFNHMLRQNLVPSVATYTTMIDGYCRNRRIDKALSILSE 390

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G +P+  TY+ ++     +  L  A+ +   L    I        IL++GF  V  
Sbjct: 391 MQITGVMPSELTYSALLNGYCKVSMLGPAIYLMEDLKSRGITINKTMRTILIDGFCQVGE 450

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREM 302
             +AK +L  M +DG  P      AL   M  M  +    E L  M
Sbjct: 451 ISKAKQILKSMFEDGIDPDVITYSALINGMCRMAKMHETKEILSRM 496


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 98/234 (41%), Gaps = 17/234 (7%)

Query: 371 WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIA 430
           +T  ++    +  K  ++ W  F  +  Q   + +V     ++  + + G VE   ++  
Sbjct: 125 YTFNVLMNAFKKAKRVDSVWKLFEEMQNQ-NCSPNVITYSILIDAVCKCGGVEKALKVFL 183

Query: 431 KLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTL 490
            ++S G R    T   +ID  G S   D A   F ++ T  G ++     ++Y+SL+  L
Sbjct: 184 DMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLF-EEMTSEGLVAT---RVVYNSLIHGL 239

Query: 491 TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA 550
            +  R   A  +  EM+  G+ PD  TF+ L+Y   + G     +++F   R  G   D 
Sbjct: 240 GRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDV 299

Query: 551 YMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
            ++ VLI   CK             L    L+PD  T   L   L K GR  +A
Sbjct: 300 NLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDA 353



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 86/219 (39%), Gaps = 6/219 (2%)

Query: 62  LNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQ 116
           +  R   P I T+      L  + + D A  + E + S       +   ++L   L +S 
Sbjct: 185 MKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSE-GLVATRVVYNSLIHGLGRSG 243

Query: 117 RNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYN 176
           R      L  ++ S       V F +L+     +G        + E R     L    YN
Sbjct: 244 RADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYN 303

Query: 177 IVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM 236
           +++    K+ +  EA E F ++ ++G +P+  T+  +++ L   G++  A  +   +   
Sbjct: 304 VLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRA 363

Query: 237 RIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                   Y  L++G     R +EA  LL EM+  G  P
Sbjct: 364 GCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEP 402



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 90/480 (18%), Positives = 180/480 (37%), Gaps = 90/480 (18%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR--- 196
           F+ L + Y+++G LE  +            L+  +YN ++  + K G   +A+  +R   
Sbjct: 57  FIELARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMG 116

Query: 197 --------------------------------QVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
                                           ++ ++   PN  TY+++I+ +   G ++
Sbjct: 117 QSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVE 176

Query: 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL- 283
            AL+VF  +     +     Y  +++G       D+A  L  EM  +G    R +  +L 
Sbjct: 177 KALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLI 236

Query: 284 ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQL--- 340
             +   G    A +  REML                  +    D+ +   + YG+ +   
Sbjct: 237 HGLGRSGRADAAAKLFREMLS-----------------KGLQPDHVTFTSLVYGLGVAGR 279

Query: 341 -----KPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCW 395
                + + + + +   LD     + ++L D         +CK     K  + AW  F  
Sbjct: 280 ASEARRIFQEARDVGCALD---VNLYNVLIDT--------LCKS----KRLDEAWEIFGE 324

Query: 396 VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455
           +  + G   DVY    ++  L + G +     L+  ++  G     +    +ID    S 
Sbjct: 325 LE-EDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSG 383

Query: 456 KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
           + + A +   + ++L         ++ Y++L+    K  R  DA+ + EE+   G    V
Sbjct: 384 RVEEAGQLLLEMQSL----GYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGFANTV 439

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGV----EPDAYMFKVLI----QAYCKYLSNS 567
            T++ ++    + G      KLF+ ++Q  V    +PD   +  L+    QA    L+NS
Sbjct: 440 -TYNTILNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLLNGARQAGLSELANS 498



 Score = 46.6 bits (109), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 50/235 (21%), Positives = 94/235 (40%), Gaps = 7/235 (2%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVT-----HALRSAPNADSALSIMEALKSNP 96
           LI  +  + R++++  L   +  + L P  VT     + L  A  A  A  I +  + + 
Sbjct: 235 LIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEAR-DV 293

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
             + + +  + L   L KS+R  E   + G++     +     F  LM     SG +   
Sbjct: 294 GCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDA 353

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
                + ++         YN ++    K+G+  EA +   ++   G  P+  TY  +I+ 
Sbjct: 354 FILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDE 413

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
               G+++ AL +F  +       T   Y  ++ G     R DEA  L N M+ +
Sbjct: 414 SCKGGRIEDALRLFEEISAKGFANTV-TYNTILNGLCMAGRVDEAYKLFNGMKQE 467



 Score = 45.8 bits (107), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 82/212 (38%), Gaps = 2/212 (0%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALK--SNPNFSHNQSTLHALATVLAKSQRNHELKT 123
           +L P I     R   +A      +EALK       +   S  ++L     K+    +   
Sbjct: 51  ILQPRIFIELARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALA 110

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           +   +  S     +  F  LM  +  +  ++ V   + E + +    +  +Y+I++    
Sbjct: 111 VYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVC 170

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           K G   +A++ F  +   G  PN  TYT MI+ L   G +D A  +F  +    +  T  
Sbjct: 171 KCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRV 230

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            Y  L+ G     R D A  L  EM   G  P
Sbjct: 231 VYNSLIHGLGRSGRADAAAKLFREMLSKGLQP 262



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 73/179 (40%), Gaps = 14/179 (7%)

Query: 389 AWHFFCWVAYQPGYTHDVYA---LEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR 445
           A+ FF WV  Q G    V A   L +ML I  R    E V   + K R   +  P   I 
Sbjct: 2   AYKFFKWVRTQRGGVPSVRACTTLVEMLGIARRFNEAEEVLAEVEKSRY--ILQPRIFIE 59

Query: 446 LIIDFY--GISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVL 503
           L   +   G+ +K+  ALK     R  C   +       Y+SL+    K      A+ V 
Sbjct: 60  LARGYASAGLLEKSVEALKRMEGHR--CALTAS-----AYNSLIDAFVKAGYTQKALAVY 112

Query: 504 EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
             M  SG+ PD  TF+ LM  F        V KLF  ++     P+   + +LI A CK
Sbjct: 113 RVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCK 171



 Score = 42.4 bits (98), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 51/263 (19%), Positives = 103/263 (39%), Gaps = 19/263 (7%)

Query: 10  VILSKAFTQLQTRSFVRAPFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDP 69
           ++  + F +L  R +  A    K    L+R   ++  R A+ +++ NSL        +D 
Sbjct: 51  ILQPRIFIEL-ARGYASAGLLEKSVEALKR---MEGHRCALTASAYNSL--------IDA 98

Query: 70  FIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDIS 129
           F+       A     AL++   +        +  T + L     K++R   +  L  ++ 
Sbjct: 99  FV------KAGYTQKALAVYRVM-GQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQ 151

Query: 130 SSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF 189
           +       + +  L+      G +E  L  + + + R    +  +Y  ++    K+G   
Sbjct: 152 NQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVD 211

Query: 190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV 249
           +A   F ++  EG +     Y  +I  L   G+ D+A ++F  +    ++     +  LV
Sbjct: 212 KAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLV 271

Query: 250 EGFVGVERFDEAKSLLNEMRDDG 272
            G     R  EA+ +  E RD G
Sbjct: 272 YGLGVAGRASEARRIFQEARDVG 294


>gi|255661004|gb|ACU25671.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 369

 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 98/217 (45%), Gaps = 20/217 (9%)

Query: 396 VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI--RLIIDFYGI 453
           +A Q G   D +A   M+  L +   +E    ++  +   G + P + +   LI    G 
Sbjct: 119 IAEQKGGVLDAFAYSAMINALCKEAKLEKAVCVLNGMIKSGCK-PNTCVYNALIKGLVGA 177

Query: 454 SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP 513
           SK  D A++ FH+  T   P      ++ Y+ L+  L K  R  +A ++++EM+  G+ P
Sbjct: 178 SK-LDDAIRVFHEMGTTHSPPD----IVTYNILINGLFKGDRFGEAYDLVKEMLEKGLDP 232

Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK----------Y 563
            V T+S LM    L    ++  +L++ V + G +PD  M  +LI   C           Y
Sbjct: 233 SVITYSLLMKGLCLGDKVEMALQLWNQVTKKGFKPDVQMHNILIHGLCSVGKTQLALSLY 292

Query: 564 LSNS--NLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
           L  +  N  P+  T+  L +  +K+G  + A  +  R
Sbjct: 293 LDMNRWNCAPNLVTQNTLMQGFYKDGNIRNALVIWAR 329



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 76/173 (43%)

Query: 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
           ++ + +  VL  + +  E  ++   ++ S F+  S  +  L+  +  +  +   L     
Sbjct: 60  ASFNTMIRVLFDNGKVEEAMSIRELMAKSGFVEDSKTYGTLVNGFCKNRYINKSLQVLEI 119

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
             Q+  +L   +Y+ +++   K  K  +AV     +I  G  PN+  Y  +I+ LV   K
Sbjct: 120 AEQKGGVLDAFAYSAMINALCKEAKLEKAVCVLNGMIKSGCKPNTCVYNALIKGLVGASK 179

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           LD A+ VF  +           Y IL+ G    +RF EA  L+ EM + G  P
Sbjct: 180 LDDAIRVFHEMGTTHSPPDIVTYNILINGLFKGDRFGEAYDLVKEMLEKGLDP 232


>gi|255661032|gb|ACU25685.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 373

 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 97/217 (44%), Gaps = 20/217 (9%)

Query: 396 VAYQPGYTHDVYALEKMLTILARHGHV-ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS 454
           +A + G   D +A   M+  L +   + E V  L   +++ G         LI  F G+S
Sbjct: 119 IAEEKGGVLDAFAYSAMINGLCKEAKLDEAVSVLNGMIKNGGTPNAHVYNTLINGFVGVS 178

Query: 455 KKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP 513
           K  D A++ F +   T C P      ++ Y++L+  L K +R  +A ++++EM+  G  P
Sbjct: 179 K-FDDAIRVFREMGSTNCSPT-----VVTYNTLINGLCKGERFAEAYDLVKEMLEKGWKP 232

Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY---------- 563
            V T+S LM         ++  +L++ V  NG++PD  M  +LI   C            
Sbjct: 233 CVITYSLLMKGLCQGHKVEMALQLWNQVISNGLKPDVQMLNILIHGLCSVGKTQLALMLY 292

Query: 564 --LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
             ++  N  P+  T   L +  +K+G  + A  +  R
Sbjct: 293 FDMNRWNCAPNLVTHNTLMEGFYKDGDIRNALGIWAR 329



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 64/148 (43%)

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           ++ S F+  S  +  L+  +  +G +   L       ++  +L   +Y+ +++   K  K
Sbjct: 85  MTQSGFVEDSTTYGILVDGFCKNGYINKSLRVLGIAEEKGGVLDAFAYSAMINGLCKEAK 144

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
             EAV     +I  G  PN+  Y  +I   V + K D A+ VF  +       T   Y  
Sbjct: 145 LDEAVSVLNGMIKNGGTPNAHVYNTLINGFVGVSKFDDAIRVFREMGSTNCSPTVVTYNT 204

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           L+ G    ERF EA  L+ EM + G  P
Sbjct: 205 LINGLCKGERFAEAYDLVKEMLEKGWKP 232



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 64/131 (48%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V+F  +M+    +GD++  +S W    Q   +  + +Y I++  + K G   +++     
Sbjct: 60  VSFNIMMRGLFGNGDVDKAISIWELMTQSGFVEDSTTYGILVDGFCKNGYINKSLRVLGI 119

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
             ++G + ++  Y+ MI  L    KLD A+ V + +        +  Y  L+ GFVGV +
Sbjct: 120 AEEKGGVLDAFAYSAMINGLCKEAKLDEAVSVLNGMIKNGGTPNAHVYNTLINGFVGVSK 179

Query: 258 FDEAKSLLNEM 268
           FD+A  +  EM
Sbjct: 180 FDDAIRVFREM 190


>gi|255661030|gb|ACU25684.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 376

 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 97/217 (44%), Gaps = 20/217 (9%)

Query: 396 VAYQPGYTHDVYALEKMLTILARHGHV-ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS 454
           +A + G   D +A   M+  L +   + E V  L   +++ G         LI  F G+S
Sbjct: 119 IAEEKGGVLDAFAYSAMINGLCKEAKLDEAVSVLNGMIKNGGTPNAHVYNTLINGFMGVS 178

Query: 455 KKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP 513
           K  D A++ F +   T C P      ++ Y++L+  L K +R  +A ++++EM+  G  P
Sbjct: 179 K-FDDAIRVFREMGSTNCSPT-----VVTYNTLINGLCKGERFAEAYDLVKEMLEKGWKP 232

Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY---------- 563
            V T+S LM         ++  +L++ V  NG++PD  M  +LI   C            
Sbjct: 233 CVITYSLLMKGLCQGHKVEMALQLWNQVISNGLKPDVQMLNILIHGLCSVGKTQLALMLY 292

Query: 564 --LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
             ++  N  P+  T   L +  +K+G  + A  +  R
Sbjct: 293 FDMNRWNCAPNLVTHNTLMEGFYKDGDIRNALGIWAR 329



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 64/148 (43%)

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           ++ S F+  S  +  L+  +  +G +   L       ++  +L   +Y+ +++   K  K
Sbjct: 85  MTQSGFVEDSTTYGILVDGFCKNGYINKSLRVLEIAEEKGGVLDAFAYSAMINGLCKEAK 144

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
             EAV     +I  G  PN+  Y  +I   + + K D A+ VF  +       T   Y  
Sbjct: 145 LDEAVSVLNGMIKNGGTPNAHVYNTLINGFMGVSKFDDAIRVFREMGSTNCSPTVVTYNT 204

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           L+ G    ERF EA  L+ EM + G  P
Sbjct: 205 LINGLCKGERFAEAYDLVKEMLEKGWKP 232



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 64/131 (48%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V+F  +M+    +GD++  +S W    Q   +  + +Y I++  + K G   +++     
Sbjct: 60  VSFNIMMRGLFGNGDVDKAISIWELMTQSGFVEDSTTYGILVDGFCKNGYINKSLRVLEI 119

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
             ++G + ++  Y+ MI  L    KLD A+ V + +        +  Y  L+ GF+GV +
Sbjct: 120 AEEKGGVLDAFAYSAMINGLCKEAKLDEAVSVLNGMIKNGGTPNAHVYNTLINGFMGVSK 179

Query: 258 FDEAKSLLNEM 268
           FD+A  +  EM
Sbjct: 180 FDDAIRVFREM 190


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 78/175 (44%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T +++   + K+ +  + + +  ++         V++  L+  Y  +G     LS +
Sbjct: 219 NLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVF 278

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            E  Q+  +    ++  ++ V  K G    AV   RQ+ + G   N  T+T +I+     
Sbjct: 279 AEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKK 338

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           G LD AL     +   RIK +   Y  L+ G+  V R DEA+ LL+EM   G  P
Sbjct: 339 GFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKP 393



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 22/223 (9%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA- 457
           Q G   DV     ++ ++ + G++E    L+ ++R  G+++   T   +ID  G  KK  
Sbjct: 283 QKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALID--GFCKKGF 340

Query: 458 -DAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
            D AL A    R       + K  ++ Y++L+       R  +A  +L EM   G+ PDV
Sbjct: 341 LDDALLAVRGMRQ-----CRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDV 395

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC--KYLSNSN----- 568
            T+S ++  +    D     +L   + + GV PDA  +  LI+  C  K LS+++     
Sbjct: 396 VTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKN 455

Query: 569 -----LMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
                L PD  T   L     KEG  + A ++ ++  K   +P
Sbjct: 456 MIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLP 498



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 6/163 (3%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   +V     ++    R G V+  +RL+  +   G++    T   +++    + K + A
Sbjct: 180 GCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDA 239

Query: 461 LKAFHDD-RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
            K F +  R    P       + Y++L+    K     +A++V  EM   GI+PDV TF+
Sbjct: 240 RKVFDEMMREGLAPDG-----VSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFT 294

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            L++     G+ +    L   +R+ G++ +   F  LI  +CK
Sbjct: 295 SLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCK 337



 Score = 46.6 bits (109), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 72/175 (41%), Gaps = 23/175 (13%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+R L       +A+++L +M  +G  P+V T++ L+  F   G+    ++L  M+ 
Sbjct: 153 YNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMML 212

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
             G++P+   F  ++   CK             +    L PD  +   L     K G   
Sbjct: 213 DGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSH 272

Query: 591 EAAAV-EERCEK--INDVPSLALRGHI--------WAVSSADLTRVHSIYRNSIT 634
           EA +V  E  +K  + DV +     H+        WAV+     R   +  N +T
Sbjct: 273 EALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVT 327



 Score = 45.8 bits (107), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 42/212 (19%), Positives = 87/212 (41%), Gaps = 6/212 (2%)

Query: 69  PFIVT-----HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT 123
           P +VT     H +  A N + A++++  ++       N+ T  AL     K     +   
Sbjct: 288 PDVVTFTSLIHVMCKAGNLEWAVTLVRQMRER-GLQMNEVTFTALIDGFCKKGFLDDALL 346

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
            +  +   +     V +  L+  Y   G ++      +E   +       +Y+ ++S Y 
Sbjct: 347 AVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYC 406

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           K      A E  +Q++++G +P++ TY+ +I  L    +L  A  +F  +  + ++    
Sbjct: 407 KNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEF 466

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            Y  L++G       + A SL ++M   G  P
Sbjct: 467 TYTSLIDGHCKEGNVERALSLHDKMVKAGVLP 498



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 41/80 (51%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YSSL+R L + KR  DA  + + MI  G+ PD  T++ L+     +G+ +    L   + 
Sbjct: 433 YSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMV 492

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
           + GV PD   + VLI    K
Sbjct: 493 KAGVLPDVVTYSVLINGLSK 512


>gi|255548471|ref|XP_002515292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545772|gb|EEF47276.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 96/210 (45%), Gaps = 3/210 (1%)

Query: 67  LDPF-IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           +D F I   A  +A     A+++ E +K   N+     T++ L   L +++   E + L 
Sbjct: 163 MDTFSIAMRAFAAAKERKKAVAMFELMKKY-NYKVGVETINHLLDSLGRAKLGKEAQALF 221

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
            ++      N+    + L  W      +E   S WNE   +       ++NI++    ++
Sbjct: 222 ENLKGRFTPNLRTYTVLLNGWCKVKNLME-AGSVWNEMIDKGFKPDIVAHNIMLEGLLRS 280

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
            +  +A++ F  +  +G  P+ R+YT++I +L    K++ A+E F  +     K  +  Y
Sbjct: 281 KQRSDAIKLFMVMKAKGPSPDVRSYTILIRYLCRQSKMEEAVEYFQEMIDSGCKPDAAVY 340

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             L+ GF   +R D    LL EM+++G  P
Sbjct: 341 TCLITGFGNRKRMDMVYDLLKEMKEEGCPP 370



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 115/312 (36%), Gaps = 58/312 (18%)

Query: 321 DEDENDDNNSGVRIAYGVQLKPWLDP---KALANTLDEW---SPEVVSLLADAKFVWTTR 374
           D+D N+DN        G ++    DP     +   +DE       + ++L +     +  
Sbjct: 37  DDDCNEDNKCESGNNDGEKINSSADPVEVDRVCKVIDELFALDRNMEAVLDECGINLSHD 96

Query: 375 LVCKVLRHF-KSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
           LV  VL  F  + + A+ FFCW   + G+ HD      M++ILA+    E V  ++ ++ 
Sbjct: 97  LVIDVLERFCHARKPAFRFFCWAGEKQGFEHDSRTYNSMMSILAKTRQFETVVSMLEEMG 156

Query: 434 SDGM----------------------------------RLPFSTIRLIIDFYGISKKADA 459
             G+                                  ++   TI  ++D  G +K    
Sbjct: 157 GKGVLTMDTFSIAMRAFAAAKERKKAVAMFELMKKYNYKVGVETINHLLDSLGRAKLGKE 216

Query: 460 ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           A   F + +    P      +  Y+ LL    K K   +A +V  EMI  G  PD+   +
Sbjct: 217 AQALFENLKGRFTPN-----LRTYTVLLNGWCKVKNLMEAGSVWNEMIDKGFKPDIVAHN 271

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNS 567
            ++             KLF +++  G  PD   + +LI+  C+             + +S
Sbjct: 272 IMLEGLLRSKQRSDAIKLFMVMKAKGPSPDVRSYTILIRYLCRQSKMEEAVEYFQEMIDS 331

Query: 568 NLMPDAATKELL 579
              PDAA    L
Sbjct: 332 GCKPDAAVYTCL 343



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 97/241 (40%), Gaps = 22/241 (9%)

Query: 336 YGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCW 395
           Y V L  W   K L      W+ E++        V    ++  +LR  +  +    F   
Sbjct: 235 YTVLLNGWCKVKNLMEAGSVWN-EMIDKGFKPDIVAHNIMLEGLLRSKQRSDAIKLFMVM 293

Query: 396 VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455
            A  P  + DV +   ++  L R   +E       ++   G +   +    +I  +G  K
Sbjct: 294 KAKGP--SPDVRSYTILIRYLCRQSKMEEAVEYFQEMIDSGCKPDAAVYTCLITGFGNRK 351

Query: 456 KADAA---LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV 512
           + D     LK   ++   C P       L Y++L++ +T+ K   DA  + ++M  SGI 
Sbjct: 352 RMDMVYDLLKEMKEEG--CPPDG-----LTYNALIKLMTRLKMPDDAARIYKKMTQSGIE 404

Query: 513 PDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY---------CKY 563
           P + T++ +M  +    + ++ + ++  + + G  PD   + VLI            CKY
Sbjct: 405 PTIHTYNMIMKSYFQTRNYEMGRAVWDEMSRKGFCPDDNSYTVLIGGLISQGRSGEACKY 464

Query: 564 L 564
           L
Sbjct: 465 L 465


>gi|58013026|gb|AAW62966.1| chloroplast embryo-defective 1270 [Arabidopsis thaliana]
          Length = 1429

 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 3/157 (1%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G+  D      +L   AR  + E V  +  +++  G      T   II  YG   + D A
Sbjct: 362 GFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLA 421

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           L+ + D + L G   +    + Y+ L+ +L K  R  +A  ++ EM+  GI P +QT+S 
Sbjct: 422 LQLYKDMKGLSG---RNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSA 478

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           L+  +A  G  +  +  FS + ++G +PD   + V++
Sbjct: 479 LICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVML 515



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 95/228 (41%), Gaps = 25/228 (10%)

Query: 399 QPGYTHDVYALEKMLTILARHGHV--ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK 456
           Q G   D+ +   ++    + G +   L   L+  +R+ G+R    T   ++        
Sbjct: 253 QRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSN 312

Query: 457 ADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
            D A+K F D +   C P      +  Y++++    +C    +A  +  E+   G  PD 
Sbjct: 313 LDGAVKVFEDMEAHRCQPD-----LWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDA 367

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------ 563
            T++ L+Y FA + + + V++++  +++ G   D   +  +I  Y K             
Sbjct: 368 VTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKD 427

Query: 564 ---LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
              LS  N  PDA T  +L  SL K  R  EAAA+      +   P+L
Sbjct: 428 MKGLSGRN--PDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTL 473



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 106/240 (44%), Gaps = 9/240 (3%)

Query: 81  NADSALSI---MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVS 137
           N D A+ +   MEA +  P+      T +A+ +V  +     E + L  ++    F   +
Sbjct: 312 NLDGAVKVFEDMEAHRCQPDLW----TYNAMISVYGRCGLAAEAERLFMELELKGFFPDA 367

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V + +L+  ++   + E V   + + ++        +YN ++ +Y K G+   A++ ++ 
Sbjct: 368 VTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKD 427

Query: 198 VID-EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           +    G  P++ TYTV+I+ L    +   A  + S +  + IK T + Y  L+ G+    
Sbjct: 428 MKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAG 487

Query: 257 RFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
           + +EA+   + M   G  P   A  V L+ +      + A    R+M+ D    +   YE
Sbjct: 488 KREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYE 547



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 76/162 (46%), Gaps = 4/162 (2%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G +  V ++  +L  L   G +E +  ++ +L+  G ++  S+I L++D +  +      
Sbjct: 817 GPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNI-FE 875

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           +K  +      G +   +L   Y  ++  L K KR  DA  ++ EM  +    ++  ++ 
Sbjct: 876 VKKIYSSMKAAGYLPTIRL---YRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNS 932

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           ++  +    D K   +++  +++ G+EPD   +  LI  YC+
Sbjct: 933 MLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCR 974



 Score = 43.5 bits (101), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 133/358 (37%), Gaps = 42/358 (11%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG---KNFEAVETFRQVI 199
           +M  YS SG         +  RQR  +    S+N +++   K+G    N  AVE    V 
Sbjct: 231 MMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNL-AVELLDMVR 289

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY--LILVEGFVGVER 257
           + G  P++ TY  ++        LD A++VF  +   R +     Y  +I V G  G+  
Sbjct: 290 NSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAA 349

Query: 258 FDEAKSLLNEMRDDGKFPG-----------------RAMRVALERMQEMGFIQGANEFLR 300
             EA+ L  E+   G FP                    ++   ++MQ+MGF  G +E   
Sbjct: 350 --EAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGF--GKDEMTY 405

Query: 301 EMLPDKRIKNVRYYEDGSDDDEDENDDNNSGV--RIAYGVQLKPWLDPKALANTLDEWSP 358
             +         Y + G  D   +   +  G+  R    +     +D    AN   E + 
Sbjct: 406 NTIIH------MYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVE-AA 458

Query: 359 EVVSLLADAKFVWT----TRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT 414
            ++S + D     T    + L+C   +  K  E    F C +  + G   D  A   ML 
Sbjct: 459 ALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCML--RSGTKPDNLAYSVMLD 516

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
           +L R         L   + SDG    ++   L+I       ++D   K   D   LCG
Sbjct: 517 VLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEELCG 574


>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
 gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
          Length = 899

 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 103/472 (21%), Positives = 189/472 (40%), Gaps = 48/472 (10%)

Query: 99  SHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLS 158
           S N  T   L   L K  R H  + ++ ++     +     +  ++  Y  SG ++  L 
Sbjct: 192 SLNLHTYTLLIKGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALG 251

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTG-KNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217
                 +        +YNI+  +Y   G K  EA E     I  G  P   T+T +I   
Sbjct: 252 IKALMERNGCNPDDWTYNIL--IYGLCGEKPDEAEELLNDAIVRGFTPTVITFTNIINGY 309

Query: 218 VNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR 277
               ++D AL V +++     K   + Y +L+   +   RF EAK  ++EM  +G  P  
Sbjct: 310 CKAERIDDALRVKTSMLSSNCKLDLQAYGVLINVLIKKCRFKEAKETVSEMFANGLAPNV 369

Query: 278 AMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAY 336
            +  ++ +   ++G +  A E  R M  +    N   Y                   + Y
Sbjct: 370 VIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSS-----------------LIY 412

Query: 337 G-VQLKPWLDPKALANTLDE--WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFF 393
           G +Q +      AL   + E   +P V++        +TT +  +  +H    + A+  F
Sbjct: 413 GLIQDQKLHKAMALITKMQEDGITPGVIT--------YTTLIQGQCKKH--EFDNAFRLF 462

Query: 394 CWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGI 453
             +  Q G T D  A   +   L + G  E     + +    G+ L   T   ++D  G 
Sbjct: 463 -EMMEQNGLTPDEQAYNVLTHALCKSGRAEEAYSFLVR---KGVVLTKVTYTSLVD--GF 516

Query: 454 SKKADAALKAFHDDRTL---CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSG 510
           SK  +    A   ++ +   C   S       YS LL+ L K K+  +A+++L++M  SG
Sbjct: 517 SKAGNTDFAAVLIEKMVNEGCKADS-----YTYSVLLQALCKQKKLNEALSILDQMTLSG 571

Query: 511 IVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           +  ++  ++ ++     +G     + +F+ +  +G +P A  + V I +YCK
Sbjct: 572 VKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSATTYTVFISSYCK 623



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 86/190 (45%), Gaps = 5/190 (2%)

Query: 87  SIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQW 146
           ++ME    NP+       ++ L       ++  E + L+ D     F    + F N++  
Sbjct: 254 ALMERNGCNPDDWTYNILIYGLC-----GEKPDEAEELLNDAIVRGFTPTVITFTNIING 308

Query: 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206
           Y  +  ++  L            L  ++Y ++++V  K  +  EA ET  ++   G  PN
Sbjct: 309 YCKAERIDDALRVKTSMLSSNCKLDLQAYGVLINVLIKKCRFKEAKETVSEMFANGLAPN 368

Query: 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
              YT +I+    +GK+ +ALEVF  +     +  +  Y  L+ G +  ++  +A +L+ 
Sbjct: 369 VVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALIT 428

Query: 267 EMRDDGKFPG 276
           +M++DG  PG
Sbjct: 429 KMQEDGITPG 438



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 109/496 (21%), Positives = 192/496 (38%), Gaps = 96/496 (19%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAK--SQRNHELKTLIGDISSSKFLNVSVNFM 141
           +AL+  E +   P F H  ++  AL  +LA+  +  N++ K ++  +S S         +
Sbjct: 70  TALAFFEWVARRPGFRHTAASHAALLQLLARRRAPANYD-KLVVSMVSCSDTAEDMREAV 128

Query: 142 NLMQWYS-TSGDLE----------LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           + +Q      GDL           L+    NEY          SY I++    +T    E
Sbjct: 129 DAIQAIRRVGGDLRKACWLLMMMPLMGCRRNEY----------SYTILIQGLCETRCVRE 178

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A+     ++ +G   N  TYT++I+ L   G++  A  V   +PL  +  +   Y  +++
Sbjct: 179 ALVLLVMMVQDGCSLNLHTYTLLIKGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMID 238

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKN 310
           G+    R  +A                 ++  +ER        G N       PD    N
Sbjct: 239 GYCKSGRMKDA---------------LGIKALMER-------NGCN-------PDDWTYN 269

Query: 311 VRYYE-DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF 369
           +  Y   G   DE E   N++ VR        P +      N ++ +       + DA  
Sbjct: 270 ILIYGLCGEKPDEAEELLNDAIVR-----GFTPTV--ITFTNIINGYCK--AERIDDALR 320

Query: 370 VWTTRLV--CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDR 427
           V T+ L   CK+                         D+ A   ++ +L +    +    
Sbjct: 321 VKTSMLSSNCKL-------------------------DLQAYGVLINVLIKKCRFKEAKE 355

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH-DDRTLCGPISKFKLMLLYSSL 486
            ++++ ++G+         IID Y    K  AAL+ F   +   C P +       YSSL
Sbjct: 356 TVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNA-----WTYSSL 410

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           +  L + ++   A+ ++ +M   GI P V T++ L+     + +     +LF M+ QNG+
Sbjct: 411 IYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGL 470

Query: 547 EPDAYMFKVLIQAYCK 562
            PD   + VL  A CK
Sbjct: 471 TPDEQAYNVLTHALCK 486



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 87/209 (41%), Gaps = 33/209 (15%)

Query: 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS-----DGMRLP 440
           P TA  FF WVA +PG+ H   +   +L +LAR       D+L+  + S     + MR  
Sbjct: 68  PATALAFFEWVARRPGFRHTAASHAALLQLLARRRAPANYDKLVVSMVSCSDTAEDMREA 127

Query: 441 FSTIRLIIDFYGISKKA-------------------DAALKAFHDDRTLCGPISKFKLML 481
              I+ I    G  +KA                      ++   + R +   +    +M+
Sbjct: 128 VDAIQAIRRVGGDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLVMMV 187

Query: 482 ---------LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
                     Y+ L++ L K  R   A  VLEEM   G+VP V T++ ++  +   G  K
Sbjct: 188 QDGCSLNLHTYTLLIKGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMK 247

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
               + +++ +NG  PD + + +LI   C
Sbjct: 248 DALGIKALMERNGCNPDDWTYNILIYGLC 276



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/222 (20%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D+A  + E ++ N   + ++   + L   L KS R  E  + +        +   V + +
Sbjct: 456 DNAFRLFEMMEQN-GLTPDEQAYNVLTHALCKSGRAEEAYSFL---VRKGVVLTKVTYTS 511

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  +S +G+ +       +         + +Y++++    K  K  EA+    Q+   G
Sbjct: 512 LVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLSG 571

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
              N   YT++I  ++  GK D A  +F+ +     K ++  Y + +  +  + + +EA+
Sbjct: 572 VKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAE 631

Query: 263 SLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREML 303
            L+ EM  DG  P      V +     MG++  A   L+ M+
Sbjct: 632 HLIGEMERDGVAPDVVTYNVFINGCGHMGYMDRAFSTLKRMI 673



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 1/151 (0%)

Query: 165 QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
           ++  +L+  +Y  ++  ++K G    A     ++++EG   +S TY+V+++ L    KL+
Sbjct: 499 RKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLLQALCKQKKLN 558

Query: 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVAL 283
            AL +   + L  +K     Y I++   +   + D AKS+ NEM   G  P      V +
Sbjct: 559 EALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSATTYTVFI 618

Query: 284 ERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
               ++G I+ A   + EM  D    +V  Y
Sbjct: 619 SSYCKIGQIEEAEHLIGEMERDGVAPDVVTY 649



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 91/414 (21%), Positives = 161/414 (38%), Gaps = 34/414 (8%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           Y  ++  Y K GK   A+E FR +  EG  PN+ TY+ +I  L+   KL  A+ + + + 
Sbjct: 372 YTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQ 431

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQ 293
              I      Y  L++G      FD A  L   M  +G  P  +A  V    + + G  +
Sbjct: 432 EDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSGRAE 491

Query: 294 GANEFL-REMLPDKRIKN---VRYYEDGSDDD------EDENDDNNSGVRIAYGVQLKPW 343
            A  FL R+ +   ++     V  +    + D      E   ++        Y V L+  
Sbjct: 492 EAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLLQAL 551

Query: 344 LDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYT 403
              K L   L       +S +     V  T ++ ++++  K       F   ++   G+ 
Sbjct: 552 CKQKKLNEALSILDQMTLSGV-KCNIVAYTIIISEMIKEGKHDHAKSMFNEMIS--SGHK 608

Query: 404 HDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID---FYGISKKADAA 460
                    ++   + G +E  + LI ++  DG+     T  + I+     G   +A + 
Sbjct: 609 PSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFINGCGHMGYMDRAFST 668

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR----------DFDAI-NVLEEMIFS 509
           LK   D    C P      +LL   L  +L               + D +  +LE M+  
Sbjct: 669 LKRMIDAS--CEPNYWTYWILLKHFLKMSLVDAHYVDTSGMWNWIELDTVWQLLERMVKH 726

Query: 510 GIVPDVQTFSGLMYHF--ALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           G+ P   T+S ++  F  A + +E  V  LF  +R   + P+  ++ +LI+  C
Sbjct: 727 GLNPTAVTYSSIIAGFCKATRLEEACV--LFDHMRGKDISPNEEIYTMLIKCCC 778



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 16/127 (12%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI--VQKL 537
           +++Y+S++    K  +   A+ V   M   G  P+  T+S L+Y   L  D+K+     L
Sbjct: 369 VVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIY--GLIQDQKLHKAMAL 426

Query: 538 FSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWK 585
            + ++++G+ P    +  LIQ  CK             +  + L PD     +L  +L K
Sbjct: 427 ITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTHALCK 486

Query: 586 EGRRKEA 592
            GR +EA
Sbjct: 487 SGRAEEA 493



 Score = 46.6 bits (109), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 79/205 (38%), Gaps = 4/205 (1%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           ++THAL  +  A+ A S +            + T  +L    +K+        LI  + +
Sbjct: 479 VLTHALCKSGRAEEAYSFL----VRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVN 534

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                 S  +  L+Q       L   LS  ++        +  +Y I++S   K GK+  
Sbjct: 535 EGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHDH 594

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A   F ++I  G  P++ TYTV I     +G+++ A  +   +    +      Y + + 
Sbjct: 595 AKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFIN 654

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP 275
           G   +   D A S L  M D    P
Sbjct: 655 GCGHMGYMDRAFSTLKRMIDASCEP 679



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 39/215 (18%), Positives = 84/215 (39%), Gaps = 17/215 (7%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           ++  AL      + ALSI++ + +      N      + + + K  ++   K++  ++ S
Sbjct: 546 VLLQALCKQKKLNEALSILDQM-TLSGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMIS 604

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           S     +  +   +  Y   G +E       E  +        +YN+ ++     G    
Sbjct: 605 SGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFINGCGHMGYMDR 664

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLG----------------KLDSALEVFSALP 234
           A  T +++ID    PN  TY ++++H + +                 +LD+  ++   + 
Sbjct: 665 AFSTLKRMIDASCEPNYWTYWILLKHFLKMSLVDAHYVDTSGMWNWIELDTVWQLLERMV 724

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
              +  T+  Y  ++ GF    R +EA  L + MR
Sbjct: 725 KHGLNPTAVTYSSIIAGFCKATRLEEACVLFDHMR 759


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 106/547 (19%), Positives = 218/547 (39%), Gaps = 65/547 (11%)

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L GD+  S+     V F  L+   +     +LV+S   + +      +  +Y+I+++ + 
Sbjct: 68  LFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFC 127

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           +  +   A+    +++  G  P+  T   ++    +  ++  A+ +   +  M  +  S 
Sbjct: 128 RRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSF 187

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
            +  L+ G     R  EA +L++ M   G  P      + +  + + G I  A   L++M
Sbjct: 188 TFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKM 247

Query: 303 LPDKRIKNVRYYE---DGSDDDEDENDD-------NNSGVR---IAYGVQLKP------W 343
              K    V  Y    D   + ++ ND        +N G+R   + Y   ++       W
Sbjct: 248 EQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRW 307

Query: 344 LDPKALANTLDE--WSPEVV--SLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQ 399
            D   L + + E   +P VV  S L DA FV   +LV          E  +      +  
Sbjct: 308 SDASRLLSDMIERKINPNVVTFSALIDA-FVKEGKLV--------EAEKLYDEMIKRSID 358

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
           P    D++    ++     H  ++    +   + S        T   +I  +  +K+ D 
Sbjct: 359 P----DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDE 414

Query: 460 ALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
            ++ F +   R L G        + Y++L+    + +   +A  V ++M+  G++PD+ T
Sbjct: 415 GMELFREMSQRGLVGNT------VTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMT 468

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LS 565
           +S L+      G  +    +F  ++++ +EPD Y + ++I+  CK             LS
Sbjct: 469 YSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLS 528

Query: 566 NSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA-----LRGHIW---AV 617
              + P+  T   +     ++G ++EA A+    ++   +P        +R H+      
Sbjct: 529 LKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKA 588

Query: 618 SSADLTR 624
           +SA+L R
Sbjct: 589 ASAELIR 595



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 108/262 (41%), Gaps = 17/262 (6%)

Query: 65  RLLDPFIVTHALRSAPNA-------DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR 117
           R +DP I T++  S  N        D A  + E + S   F  N  T + L     K++R
Sbjct: 355 RSIDPDIFTYS--SLINGFCMHDRLDEAKHMFELMISKDCFP-NVVTYNTLIKGFCKAKR 411

Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI 177
             E   L  ++S    +  +V +  L+  +  + + +     + +      L    +Y+I
Sbjct: 412 VDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSI 471

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           ++      GK   A+  F  +      P+  TY +MIE +   GK++   ++F +L L  
Sbjct: 472 LLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 531

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQ-EMGFIQGAN 296
           +K     Y  ++ GF      +EA +L  EM+++G  P       L R     G    + 
Sbjct: 532 VKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASA 591

Query: 297 EFLREMLPDKRIKNVRYYEDGS 318
           E +REM      ++ R+  D S
Sbjct: 592 ELIREM------RSCRFVGDAS 607



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 83/204 (40%), Gaps = 1/204 (0%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           +  AL +  N + AL++   +  N     N  T ++L   L    R  +   L+ D+   
Sbjct: 262 IIDALCNYKNVNDALNLFTEM-DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIER 320

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
           K     V F  L+  +   G L      ++E  +R+      +Y+ +++ +    +  EA
Sbjct: 321 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 380

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
              F  +I +   PN  TY  +I+      ++D  +E+F  +    +   +  Y  L+ G
Sbjct: 381 KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHG 440

Query: 252 FVGVERFDEAKSLLNEMRDDGKFP 275
           F      D A+ +  +M  DG  P
Sbjct: 441 FFQARECDNAQIVFKQMVSDGVLP 464


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 1/192 (0%)

Query: 113 AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
            KS R  E K L+ ++S       +V +  LM+ +   G  +       E R    L   
Sbjct: 268 CKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDL 327

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            +Y+IV+    K G   EA E  + + +    PN   YT++I+ + N GKL++A E+FS 
Sbjct: 328 MTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSN 387

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGF 291
           L +  I+     Y +++ G +     +EA  L  +M   G  P      V ++     G 
Sbjct: 388 LFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGD 447

Query: 292 IQGANEFLREML 303
              A   + EM+
Sbjct: 448 TSNAGRLIEEMV 459



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 6/174 (3%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V + +++  +   G      S + +  +R  +  T ++NI++   +K G   EA   F  
Sbjct: 153 VTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFET 212

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +I++G  PN  TY  +++   +  ++D A ++F+ +       + + Y IL++G     R
Sbjct: 213 MIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGR 272

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVALER-MQEMGFIQGANEFLREM-----LPD 305
            DEAK LL EM      P       L +   + G  Q A + L EM     LPD
Sbjct: 273 IDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPD 326



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 102/251 (40%), Gaps = 43/251 (17%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR---LPFSTI-------RLIIDF 450
           GY  DV     ++  L + G   +  +L+ K+   G +   + +STI       +LI + 
Sbjct: 77  GYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEA 136

Query: 451 Y---------GISKKA---DAALKAFHDDRTLCGPISKFKLML---------LYSSLLRT 489
                     GIS       + L  F +        S FK M+          ++ L+  
Sbjct: 137 MEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDG 196

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
           L+K     +A  V E MI  G+ P+V T++ LM  +  Q      QKLF+++ + G  P 
Sbjct: 197 LSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPS 256

Query: 550 AYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
              + +LI+ +CK             +S+  L PD  T   L K   ++GR ++A  + E
Sbjct: 257 VRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLE 316

Query: 598 RCEKINDVPSL 608
                  +P L
Sbjct: 317 EMRSYGLLPDL 327



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 93/450 (20%), Positives = 171/450 (38%), Gaps = 58/450 (12%)

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G  PN  T++ ++  L +  K+  A+++F  +  M  +     Y  ++ G   +     A
Sbjct: 42  GLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMA 101

Query: 262 KSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDD 320
             LL +M + G  P   +    ++ + +   I  A EFL EM+      NV  Y      
Sbjct: 102 IQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHG 161

Query: 321 DEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVL 380
             +    N +       V+     D       +D  S E   ++ +A+ V+ T +   V 
Sbjct: 162 FCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKE--GMILEAQCVFETMIEKGVE 219

Query: 381 RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP 440
            +  +       +C  +        +   +K+  I+ R G           +RS      
Sbjct: 220 PNVNTYNALMDGYCSQS-------QMDEAQKLFNIMVRKG-------CAPSVRS------ 259

Query: 441 FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM---LLYSSLLRTLTKCKRDF 497
                     Y I  K         + + L   +S   L    + YS+L++   +  R  
Sbjct: 260 ----------YNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQ 309

Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           DA  +LEEM   G++PD+ T+S ++     QG      +L   ++++ +EP+ +++ +LI
Sbjct: 310 DAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILI 369

Query: 558 QAYCKY---------LSN---SNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDV 605
           Q  C +          SN     + PD  T  ++   L K G   EA      CE   D 
Sbjct: 370 QGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEA------CELFRD- 422

Query: 606 PSLALRGHIWAVSSADLTRVHSIYRNSITS 635
             +A+ G +    + ++  +    RN  TS
Sbjct: 423 --MAVHGCLPNSCTYNVI-IQGFLRNGDTS 449



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 79/175 (45%), Gaps = 6/175 (3%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L++ +  SG ++       E   +A    T +Y+ +M  + + G+  +A +   ++   G
Sbjct: 263 LIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYG 322

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +P+  TY+++++ L   G LD A E+  A+   +I+     Y IL++G     + + A+
Sbjct: 323 LLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAAR 382

Query: 263 SLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM-----LPDKRIKNV 311
            L + +   G  P      V +  + + G    A E  R+M     LP+    NV
Sbjct: 383 ELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNV 437



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 84/443 (18%), Positives = 171/443 (38%), Gaps = 52/443 (11%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F  L+   S+   +   +  ++E  +        +Y+ +++   K G    A++  ++
Sbjct: 48  VTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKK 107

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + ++G  PN   Y+ +I+ L     +  A+E  S +    I      Y  ++ GF  + R
Sbjct: 108 MEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGR 167

Query: 258 FDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE- 315
            +EA SL  +M +    P      + ++ + + G I  A      M+      NV  Y  
Sbjct: 168 SNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNA 227

Query: 316 --DG--SDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVW 371
             DG  S    DE              +L   +  K  A ++  ++  +       +   
Sbjct: 228 LMDGYCSQSQMDEAQ------------KLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDE 275

Query: 372 TTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAK 431
              L+ ++     +P+T      +     G+  D              G  +   +L+ +
Sbjct: 276 AKGLLAEMSHKALTPDTVT----YSTLMKGFCQD--------------GRPQDAQKLLEE 317

Query: 432 LRSDGMRLPFSTIRLIIDFYGISKKA--DAA---LKAFHDDRTLCGPISKFKL-MLLYSS 485
           +RS G+     T  +++D  G+ K+   D A   LKA  +        SK +  + +Y+ 
Sbjct: 318 MRSYGLLPDLMTYSIVLD--GLCKQGHLDEAFELLKAMQE--------SKIEPNIFIYTI 367

Query: 486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
           L++ +    +   A  +   +   GI PDV T++ ++      G      +LF  +  +G
Sbjct: 368 LIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHG 427

Query: 546 VEPDAYMFKVLIQAYCKYLSNSN 568
             P++  + V+IQ + +    SN
Sbjct: 428 CLPNSCTYNVIIQGFLRNGDTSN 450



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 15/158 (9%)

Query: 464 FHDDRTLCGPISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           FH   ++ G + K  L    + +S+LL  L+   +  DA+ + +EM+  G  PDV T+S 
Sbjct: 28  FHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYST 87

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK---------YLS---NSN 568
           ++      G   +  +L   + + G +P+  ++  +I + CK         +LS   N  
Sbjct: 88  IINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRG 147

Query: 569 LMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
           + P+  T   +       GR  EA ++ ++  + N +P
Sbjct: 148 ISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMP 185


>gi|48716316|dbj|BAD22929.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|48717088|dbj|BAD22861.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 933

 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 122/570 (21%), Positives = 220/570 (38%), Gaps = 58/570 (10%)

Query: 69  PFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDI 128
           PFIV +        + A  + E +  N     +  TL AL   L +  R  E   L  ++
Sbjct: 244 PFIVYYC--RTKGVEEAFDLYEGMVRN-GVLLDVVTLSALVAGLCRDGRFSEAYALFREM 300

Query: 129 SSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN 188
                    V +  L+   + +G  + +LS   E   R  ++   +Y  +M    K GK 
Sbjct: 301 DKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKT 360

Query: 189 FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
            E  +T R  + +   PN  TYTV+I+ L     +D A +V   +    I      +  +
Sbjct: 361 DEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSV 420

Query: 249 VEGFVGVERFDEAKSLLNEMRD--------------DGKFPGRAMRVALERMQEMGFIQG 294
           + GFV     D+A      M++              DG F  +    ALE   +M   +G
Sbjct: 421 INGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDM-LCEG 479

Query: 295 ANEFLREMLPDKRIKNVRYYEDGSDDDEDE--NDDNNSGVRIAYGVQLKPWLDPKALAN- 351
               + + + D  +  +R  ++G  ++      D + SG+ + + V     +D    A  
Sbjct: 480 VK--VNKFIVDSLVNGLR--QNGKIEEAMALFKDASGSGLSLDH-VNYTTLIDGLFKAGD 534

Query: 352 --TLDEWSPEVV--SLLADAKFVWTTRLVC-KVLRHFKSPETAWHFFCWVAYQPGYTHDV 406
             T  ++  E++  ++L DA  V+   + C  +L  FK  ++    F       G   D 
Sbjct: 535 MPTAFKFGQELMDRNMLPDA-VVYNVFINCLCMLGKFKEAKS----FLTEMRNMGLKPDQ 589

Query: 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR-LIIDFYGISKKADAALKAFH 465
                M+    R G      +L+ +++   ++    T   L+   +G      A  K   
Sbjct: 590 STYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKA--KYLL 647

Query: 466 DDRTLCG--PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
           ++    G  P S     L +  +L+  ++ +R    +++ E M+ +G+  D+  ++ L+ 
Sbjct: 648 NEMVSAGFSPSS-----LTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQ 702

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--YLSNS----------NLMP 571
                G  +    +   +  +G+ PD   F  LI  +CK  +L N+          N+ P
Sbjct: 703 VLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISP 762

Query: 572 DAATKELLKKSLWKEGRRKEAAAVEERCEK 601
           + AT   L   L   GR  EA  V    EK
Sbjct: 763 NIATFNTLLGGLESVGRIGEAGTVLIEMEK 792



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 88/220 (40%), Gaps = 6/220 (2%)

Query: 61  LLNDRLLDPFIVTHA-----LRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKS 115
           ++ +R ++P +VT+             D+AL +   +        N+  + +L   L ++
Sbjct: 439 MMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCE-GVKVNKFIVDSLVNGLRQN 497

Query: 116 QRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
            +  E   L  D S S      VN+  L+     +GD+        E   R  L     Y
Sbjct: 498 GKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVY 557

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           N+ ++     GK  EA     ++ + G  P+  TY  MI      G+   AL++   + +
Sbjct: 558 NVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKM 617

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             IK     Y  LV G  G    ++AK LLNEM   G  P
Sbjct: 618 SSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSP 657



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 95/481 (19%), Positives = 174/481 (36%), Gaps = 68/481 (14%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + +  L+  Y   GD    LS  +    +   +    YN +++ + + G+    V+  R 
Sbjct: 170 IGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQ----VDAARG 225

Query: 198 VID----EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
           V+D     G  PN  TYT  I +      ++ A +++  +    +         LV G  
Sbjct: 226 VLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLC 285

Query: 254 GVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVR 312
              RF EA +L  EM   G  P       L + + + G  +     L EM+    + ++ 
Sbjct: 286 RDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLV 345

Query: 313 YYEDGSD--DDEDENDDNNSGVRIAYGVQLKP-------WLDPKALANTLDEWSPEVVSL 363
            Y    D    + + D+    +R A    L P        +D    A+ +DE   E V L
Sbjct: 346 TYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDE--AEQVLL 403

Query: 364 LADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVE 423
             + K +              SP                  +V     ++    + G ++
Sbjct: 404 EMEEKSI--------------SP------------------NVVTFSSVINGFVKRGLLD 431

Query: 424 LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLY 483
                   ++  G+     T   +ID +   +  DAAL+ +HD   LC  +   K ++  
Sbjct: 432 KATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHD--MLCEGVKVNKFIV-- 487

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
            SL+  L +  +  +A+ + ++   SG+  D   ++ L+      GD     K    +  
Sbjct: 488 DSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMD 547

Query: 544 NGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKE 591
             + PDA ++ V I   C              + N  L PD +T   +  S  ++G   +
Sbjct: 548 RNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAK 607

Query: 592 A 592
           A
Sbjct: 608 A 608



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 50/105 (47%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y+I+ + + K     EA+  + +++ +G +P   TY  +I      G +  A E+F  +
Sbjct: 801 TYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDM 860

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA 278
               +  TS  Y ILV G+  +    E K  L +M++ G  P + 
Sbjct: 861 QKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPSKG 905



 Score = 46.6 bits (109), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 86/208 (41%), Gaps = 20/208 (9%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           +L  L+ H H   V   +A++   G  +PF  + +     G+ +       A   DR   
Sbjct: 109 LLAALSDHAHAPAV---LAEMCKRG--VPFDGVTVNTLLAGLCRNGQVDAAAALADRG-- 161

Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
           G I    + + +++L+    +      A++V + M   G+  DV  ++ L+  F   G  
Sbjct: 162 GGIHALDV-IGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQV 220

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELL 579
              + +  M+++ GV+P+   +   I  YC+             +  + ++ D  T   L
Sbjct: 221 DAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSAL 280

Query: 580 KKSLWKEGRRKEAAAVEERCEKINDVPS 607
              L ++GR  EA A+    +K+   P+
Sbjct: 281 VAGLCRDGRFSEAYALFREMDKVGAAPN 308



 Score = 38.9 bits (89), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 96/503 (19%), Positives = 180/503 (35%), Gaps = 37/503 (7%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
           N S N  T   L   L K+    E + ++ ++         V F +++  +   G L+  
Sbjct: 374 NLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKA 433

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
                  ++R    +  +Y  ++  + K      A+E +  ++ EG   N      ++  
Sbjct: 434 TEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNG 493

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
           L   GK++ A+ +F       +      Y  L++G         A     E+ D    P 
Sbjct: 494 LRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPD 553

Query: 277 RAM-RVALERMQEMGFIQGANEFLREML-----PDKRIKN---VRYYEDGSDDDEDE--N 325
             +  V +  +  +G  + A  FL EM      PD+   N   V +   G      +  +
Sbjct: 554 AVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLH 613

Query: 326 DDNNSGVR---IAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF---VWTTRLVCKV 379
           +   S ++   I Y   +       A+     E +  +++ +  A F     T R V + 
Sbjct: 614 EMKMSSIKPNLITYNTLVAGLFGTGAV-----EKAKYLLNEMVSAGFSPSSLTHRRVLQA 668

Query: 380 LRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
               +  +       W+    G   D+     +L +L  HG       ++ ++   G+  
Sbjct: 669 CSQSRRLDVILDIHEWM-MNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAP 727

Query: 440 PFSTIRLIIDFYGISKKADAALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDF 497
              T   +I  +  S   D A   +     + +   I+ F      ++LL  L    R  
Sbjct: 728 DTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATF------NTLLGGLESVGRIG 781

Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           +A  VL EM  SG+ P+  T+  L      Q ++    +L+  +   G  P    +  LI
Sbjct: 782 EAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALI 841

Query: 558 QAYCKYLSNSNLMPDAATKELLK 580
             + K    + +M  A  KEL K
Sbjct: 842 SDFTK----AGMMTQA--KELFK 858


>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
          Length = 703

 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 128/594 (21%), Positives = 218/594 (36%), Gaps = 111/594 (18%)

Query: 70  FIVTHALRSAPNADSALSIMEALKS----NPNF-SHNQSTLHALATVLAKSQRNHELKTL 124
            +V  A   A   D+AL    AL S    NP   SHN     AL     +++R  +    
Sbjct: 87  LVVLSAFSRAIMPDAALDAFRALPSILGCNPGIRSHN-----ALLDAFVRARRFSDADAF 141

Query: 125 IGDISSSKF-LNVSVNFMN---LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS 180
              +S   F   ++ N      +++     GDL+  ++ ++  R+R       +Y+ +M 
Sbjct: 142 FASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMC 201

Query: 181 VYAKT-----------------------------GKNFEAVETFRQVI--------DEGA 203
             AK                              G  F+A E F +V+        D GA
Sbjct: 202 GLAKQDRLDHALDLLDEMPRSRVQPDVVCYNALLGGCFKAGE-FEKVMRVWDKLVKDPGA 260

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
            PN  TY VM++ L   G+     EV+  +    ++     Y IL+ G       D A  
Sbjct: 261 RPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAAR 320

Query: 264 LLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDED 323
           + +E+   G     AM  +L +    GF Q             R++    + D +     
Sbjct: 321 VYSEIIKTGLVIDAAMYNSLVK----GFCQAG-----------RVQEAWKFWDSA----- 360

Query: 324 ENDDNNSGVRI--AYGVQLKPWLDPKALANTLDEWS---PEVVSLLADAKFVWTTRLVCK 378
                 +G+R    Y + +K   D   +   ++ W     +V  +     F      +C+
Sbjct: 361 ----GFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQ 416

Query: 379 VLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR 438
               F +   A+  F   A   G   DV++   M+  L   G +    ++  K+  DG +
Sbjct: 417 --NGFAN--KAFTIF-EEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCK 471

Query: 439 LPFSTI--RLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
            P S I   LI  F  + + +DA           C P      ++ Y++L+  L K ++ 
Sbjct: 472 -PNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPT-----VITYNTLIDGLCKAEKY 525

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL--FSMVRQNGVEPDAYMFK 554
            +A +V  EM+ +G  PD+ T+  L+    L  D+KI   L  +  +   G++ D  M  
Sbjct: 526 QEASSVAREMVENGFTPDITTYGSLIR--GLFSDKKIDDALSIWKQILYKGLKVDVMMHN 583

Query: 555 VLIQAYCK-------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
           +LI   C                   N  P+  T   L   L++ G   +AA +
Sbjct: 584 ILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATL 637



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 34/173 (19%), Positives = 76/173 (43%), Gaps = 1/173 (0%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T + L   L K+++  E  ++  ++  + F      + +L++   +   ++  LS W + 
Sbjct: 511 TYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQI 570

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID-EGAIPNSRTYTVMIEHLVNLGK 222
             +   +    +NI++      GK  EA+  F  + + +   PN  TY  +++ L   G 
Sbjct: 571 LYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGY 630

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +D A  +++++    ++     Y   ++G    +R  E   LL+E+   G  P
Sbjct: 631 IDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIP 683


>gi|334185431|ref|NP_188439.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|322510063|sp|Q5G1S8.2|PP241_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g18110, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 1270; Flags: Precursor
 gi|9294066|dbj|BAB02023.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642528|gb|AEE76049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1440

 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 3/157 (1%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G+  D      +L   AR  + E V  +  +++  G      T   II  YG   + D A
Sbjct: 362 GFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLA 421

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           L+ + D + L G   +    + Y+ L+ +L K  R  +A  ++ EM+  GI P +QT+S 
Sbjct: 422 LQLYKDMKGLSG---RNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSA 478

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           L+  +A  G  +  +  FS + ++G +PD   + V++
Sbjct: 479 LICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVML 515



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 95/228 (41%), Gaps = 25/228 (10%)

Query: 399 QPGYTHDVYALEKMLTILARHGHV--ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK 456
           Q G   D+ +   ++    + G +   L   L+  +R+ G+R    T   ++        
Sbjct: 253 QRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSN 312

Query: 457 ADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
            D A+K F D +   C P      +  Y++++    +C    +A  +  E+   G  PD 
Sbjct: 313 LDGAVKVFEDMEAHRCQPD-----LWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDA 367

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------ 563
            T++ L+Y FA + + + V++++  +++ G   D   +  +I  Y K             
Sbjct: 368 VTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKD 427

Query: 564 ---LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
              LS  N  PDA T  +L  SL K  R  EAAA+      +   P+L
Sbjct: 428 MKGLSGRN--PDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTL 473



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 106/240 (44%), Gaps = 9/240 (3%)

Query: 81  NADSALSI---MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVS 137
           N D A+ +   MEA +  P+      T +A+ +V  +     E + L  ++    F   +
Sbjct: 312 NLDGAVKVFEDMEAHRCQPDLW----TYNAMISVYGRCGLAAEAERLFMELELKGFFPDA 367

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V + +L+  ++   + E V   + + ++        +YN ++ +Y K G+   A++ ++ 
Sbjct: 368 VTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKD 427

Query: 198 VID-EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           +    G  P++ TYTV+I+ L    +   A  + S +  + IK T + Y  L+ G+    
Sbjct: 428 MKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAG 487

Query: 257 RFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
           + +EA+   + M   G  P   A  V L+ +      + A    R+M+ D    +   YE
Sbjct: 488 KREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYE 547



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 76/162 (46%), Gaps = 4/162 (2%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G +  V ++  +L  L   G +E +  ++ +L+  G ++  S+I L++D +  +      
Sbjct: 817 GPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNI-FE 875

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           +K  +      G +   +L   Y  ++  L K KR  DA  ++ EM  +    ++  ++ 
Sbjct: 876 VKKIYSSMKAAGYLPTIRL---YRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNS 932

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           ++  +    D K   +++  +++ G+EPD   +  LI  YC+
Sbjct: 933 MLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCR 974



 Score = 43.5 bits (101), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 133/358 (37%), Gaps = 42/358 (11%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG---KNFEAVETFRQVI 199
           +M  YS SG         +  RQR  +    S+N +++   K+G    N  AVE    V 
Sbjct: 231 MMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNL-AVELLDMVR 289

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY--LILVEGFVGVER 257
           + G  P++ TY  ++        LD A++VF  +   R +     Y  +I V G  G+  
Sbjct: 290 NSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAA 349

Query: 258 FDEAKSLLNEMRDDGKFPG-----------------RAMRVALERMQEMGFIQGANEFLR 300
             EA+ L  E+   G FP                    ++   ++MQ+MGF  G +E   
Sbjct: 350 --EAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGF--GKDEMTY 405

Query: 301 EMLPDKRIKNVRYYEDGSDDDEDENDDNNSGV--RIAYGVQLKPWLDPKALANTLDEWSP 358
             +         Y + G  D   +   +  G+  R    +     +D    AN   E + 
Sbjct: 406 NTIIH------MYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVE-AA 458

Query: 359 EVVSLLADAKFVWT----TRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT 414
            ++S + D     T    + L+C   +  K  E    F C +  + G   D  A   ML 
Sbjct: 459 ALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCML--RSGTKPDNLAYSVMLD 516

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
           +L R         L   + SDG    ++   L+I       ++D   K   D   LCG
Sbjct: 517 VLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEELCG 574


>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 657

 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 79/167 (47%), Gaps = 1/167 (0%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           +V F  LM  Y   GD+E   S ++  +    L +  +  I++    K G++FE  + F 
Sbjct: 319 AVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFN 378

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           + + +G +P    Y  +I+  +  G ++ A  V+  +  + I  ++  Y  L++GF    
Sbjct: 379 KFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGN 438

Query: 257 RFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQGANEFLREM 302
             D A  LLN+M+  G K   +A    ++   +   ++ A+E L E+
Sbjct: 439 NIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNEL 485



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 79/177 (44%), Gaps = 4/177 (2%)

Query: 102 QSTLHALATVLA---KSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLS 158
           +S++++L ++L    K Q      T+  D   S   NV   F  L+ W    G +    +
Sbjct: 212 RSSVYSLNSILEGYLKCQSWQNAFTMFNDALESGLANV-FTFNTLLSWLCKEGKMNEACN 270

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
            W+E   +    +  SYN ++  + +      A + +++++D G  PN+ T+T++++   
Sbjct: 271 LWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYF 330

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             G +++A  +F  +    I  T     I+++G     R  E + L N+    G  P
Sbjct: 331 KKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVP 387



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 108/586 (18%), Positives = 208/586 (35%), Gaps = 111/586 (18%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD-IS 129
           I  H L   PN+  ALS++  +++   +   + T  ++ T   K     E   L  D ++
Sbjct: 80  IFVHLLCLKPNSGYALSLLREMRA-AGWIPPEGTFTSVITACVKEGNVAEALRLKDDMVN 138

Query: 130 SSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF 189
             K +N++V   +LM+ Y   G+L   L   NE                           
Sbjct: 139 CGKSMNLAV-ATSLMKGYCMQGNLRSALVLVNE--------------------------- 170

Query: 190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV 249
                   + + G +PN  TY+V+I+     G ++ A E +S +    I+ +      ++
Sbjct: 171 --------ISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSIL 222

Query: 250 EGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIK 309
           EG++  + +  A ++ N+  + G          L  + + G +  A     E++      
Sbjct: 223 EGYLKCQSWQNAFTMFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISP 282

Query: 310 NVRYYED---GSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTL----------DEW 356
           NV  Y +   G        D+ N+  ++ Y   L     P A+  T+           E 
Sbjct: 283 NVVSYNNIILG----HCRKDNINAACKV-YKEMLDNGFTPNAVTFTILMDGYFKKGDIEN 337

Query: 357 SPEVVSLLADAKFVWT-------TRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYAL 409
           +  +   + DA  + T        + +CK  R F+  +    F        G+       
Sbjct: 338 AFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFV-----SQGFVPTCMPY 392

Query: 410 EKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR- 468
             ++    + G++ L   +  ++   G+     T   +ID +      D ALK  +D + 
Sbjct: 393 NTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKR 452

Query: 469 -----------TLCGPISKFKLM-------------------LLYSSLLRTLTKCKRDFD 498
                      TL     K + M                    +Y+S++          +
Sbjct: 453 KGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEE 512

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           AI++ ++M+  GI  D++T++ L+      G       + + +   G+ PD     VLI 
Sbjct: 513 AIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLIN 572

Query: 559 AYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
             C              ++  N++P       L    +KEG  +EA
Sbjct: 573 GLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEA 618


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 89/453 (19%), Positives = 175/453 (38%), Gaps = 49/453 (10%)

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF-RQVIDEGAIPNSRTYTVMIE 215
           L+++N    R  L     +  ++S   K G+ ++ V +  +Q+   G  PN  T ++ + 
Sbjct: 77  LASFNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTLSIFMN 136

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               L ++D    V + +  + ++ T   +  L+ G   V  F +A  L ++M   G  P
Sbjct: 137 CFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQP 196

Query: 276 G-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRI 334
                   +  + ++G    A   L++M            E G   +            +
Sbjct: 197 DVYTYNTIINGLCKIGETAAAAGLLKKM-----------EEAGCQPN-----------MV 234

Query: 335 AYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPETAWHF 392
            Y   +      + +   LD +S      ++   F +T+ +  +CK  R +K      + 
Sbjct: 235 TYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSR-WKEASALLNE 293

Query: 393 FCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYG 452
              +   P    D+     ++    + G V     ++  +   G+     T   ++  Y 
Sbjct: 294 MTSLNIMP----DIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYS 349

Query: 453 ISKKADAALKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
           +      A K FH   T  C P      +  Y+ L+    K KR  +A+ +  EMI  G+
Sbjct: 350 LWTDVVEARKLFHVMITKGCKPN-----IFSYNILINGYCKAKRIDEAMQLFNEMIHQGL 404

Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--YLS---- 565
            P+  +++ L++ F   G  +  Q LF  +  NG  PD + + +L+  +CK  YL     
Sbjct: 405 TPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFR 464

Query: 566 ------NSNLMPDAATKELLKKSLWKEGRRKEA 592
                 ++ L P+     +L  ++ K G  K+A
Sbjct: 465 LFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDA 497



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 89/430 (20%), Positives = 165/430 (38%), Gaps = 44/430 (10%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F  L+      G+    +  +++   +       +YN +++   K G+   A    ++
Sbjct: 164 VTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKK 223

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + + G  PN  TY+ +I+ L     ++ AL++FS +    I      Y  L++G     R
Sbjct: 224 MEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSR 283

Query: 258 FDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
           + EA +LLNEM      P      V ++   + G +  A   L+ M       NV  Y  
Sbjct: 284 WKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSS 343

Query: 317 GSDDDEDENDDNNSGVRIAYGVQLKPWLD---PKALANTL--DEWSPEVVSLLADAKFVW 371
                            + YG  L  W D    + L + +      P + S      +  
Sbjct: 344 -----------------LMYGYSL--WTDVVEARKLFHVMITKGCKPNIFS------YNI 378

Query: 372 TTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAK 431
                CK     K  + A   F  + +Q G T +  +   ++    + G +     L   
Sbjct: 379 LINGYCKA----KRIDEAMQLFNEMIHQ-GLTPNNVSYNTLIHGFCQLGKLREAQDLFRN 433

Query: 432 LRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLT 491
           + ++G      T  +++D  G  K+     KAF   R +     K  L ++Y+ L+  + 
Sbjct: 434 MCTNGNLPDLFTYSILLD--GFCKQGYLG-KAFRLFRAMQSTYLKPNL-VMYTILVHAMC 489

Query: 492 KCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG--DEKIVQKLFSMVRQNGVEPD 549
           K     DA  +  E+   G+ P VQ ++ ++     +G  DE +  + F  +  +G  PD
Sbjct: 490 KSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEAL--EAFRNMEADGCPPD 547

Query: 550 AYMFKVLIQA 559
              + V+I+ 
Sbjct: 548 EISYNVIIRG 557



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 97/213 (45%), Gaps = 28/213 (13%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G + ++Y L   +    +   V+L   ++AK+   G++    T   +I+  G+ K  + A
Sbjct: 123 GLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLIN--GLCKVGEFA 180

Query: 461 LKA-FHDDRTL--CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
                 DD     C P      +  Y++++  L K      A  +L++M  +G  P++ T
Sbjct: 181 QAVELFDDMVAKGCQPD-----VYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVT 235

Query: 518 FSGLMYHFALQGDEKIVQK---LFSMVRQNGVEPDAYMFKVLIQAYCKY----------- 563
           +S L+        +++V +   +FS ++  G+ PD + +  LIQ  CK+           
Sbjct: 236 YSTLIDSLC---RDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLN 292

Query: 564 -LSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
            +++ N+MPD  T  +L  +  KEG+  EA  V
Sbjct: 293 EMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGV 325



 Score = 45.4 bits (106), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 89/240 (37%), Gaps = 25/240 (10%)

Query: 88  IMEALKSNPN-FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQW 146
           +M      PN FS+N      L     K++R  E   L  ++        +V++  L+  
Sbjct: 363 VMITKGCKPNIFSYN-----ILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHG 417

Query: 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206
           +   G L      +        L    +Y+I++  + K G   +A   FR +      PN
Sbjct: 418 FCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPN 477

Query: 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
              YT+++  +   G    A ++FS L +  ++   + Y  ++ G       DEA     
Sbjct: 478 LVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFR 537

Query: 267 EMRDDGKFP------------------GRAMRVALERMQEMGFIQGANEFLREMLPDKRI 308
            M  DG  P                   RA+ +  E M++ GFI      L E+   K++
Sbjct: 538 NMEADGCPPDEISYNVIIRGLLQHKDESRALLLVGE-MRDRGFIADVRPCLSEVCQGKKV 596


>gi|224133034|ref|XP_002327945.1| predicted protein [Populus trichocarpa]
 gi|222837354|gb|EEE75733.1| predicted protein [Populus trichocarpa]
          Length = 1450

 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 118/255 (46%), Gaps = 7/255 (2%)

Query: 67  LDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHEL 121
           L P I+T+     A   A N + A+++ + + ++ +   +  T +A+ +V  +   + + 
Sbjct: 324 LRPDIITYNTLISACSRASNLEEAVNVFDDMVAH-HCEPDLWTYNAMISVYGRCGLSGKA 382

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
           + L  D+ S  F   +V++ + +  ++  G++E V     E  +        +YN ++ +
Sbjct: 383 EQLFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGKDEMTYNTMIHM 442

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
           Y K G+N  A++ +R +   G  P+  TYTV+I+ L    K++ A  + S +    +K T
Sbjct: 443 YGKQGQNDLALQLYRDMKSSGRNPDVITYTVLIDSLGKTNKIEEAAGMMSEMLNTGVKPT 502

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLR 300
            + Y  L+ G+    +  EA+   + M   G  P + A  V L+        + A  F +
Sbjct: 503 LRTYSALICGYAKAGKPVEAEETFDCMLRSGTRPDQLAYSVMLDIHLRFNEPKRAMTFYK 562

Query: 301 EMLPDKRIKNVRYYE 315
           EM+ D  +     YE
Sbjct: 563 EMIHDGIMPEHSLYE 577



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 98/215 (45%), Gaps = 20/215 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G+  D  +    L   AR G+VE V  +  ++   G      T   +I  YG   + D A
Sbjct: 393 GFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGKDEMTYNTMIHMYGKQGQNDLA 452

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           L+ + D ++      +   ++ Y+ L+ +L K  +  +A  ++ EM+ +G+ P ++T+S 
Sbjct: 453 LQLYRDMKS----SGRNPDVITYTVLIDSLGKTNKIEEAAGMMSEMLNTGVKPTLRTYSA 508

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSN 568
           L+  +A  G     ++ F  + ++G  PD   + V++  + ++            + +  
Sbjct: 509 LICGYAKAGKPVEAEETFDCMLRSGTRPDQLAYSVMLDIHLRFNEPKRAMTFYKEMIHDG 568

Query: 569 LMPDAATKELLKKSLWKEGRRKEAAAV----EERC 599
           +MP+ +  EL+ ++L    + ++   V    EE C
Sbjct: 569 IMPEHSLYELMLRTLGNANKVEDIGRVVRDMEEVC 603



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/357 (21%), Positives = 152/357 (42%), Gaps = 39/357 (10%)

Query: 212  VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
             ++  L    +LD+AL+ +S    +    +   +  L++  +  E F EA  + ++MR  
Sbjct: 679  ALVVMLCKAQQLDTALKEYSNSRELGFTGSFTMFEALIQCCLENELFTEASQVFSDMR-- 736

Query: 272  GKFPG-RAMRVALERMQ----EMGFIQGANEFLREMLPDKRI-KNVRYYEDGSDDDEDEN 325
              F G +A     + M     +MGF + A+  +     D  +  N+  Y D         
Sbjct: 737  --FCGIKASECLYQSMMLLYCKMGFPETAHHLIDLTETDGTVLNNISVYVD--------- 785

Query: 326  DDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKS 385
                  V  AYG +LK W   +++A  + +      S +   + VW    + +       
Sbjct: 786  ------VIEAYG-RLKLWQKAESVAGNMRQ------SCITVNRKVWNA--LIEAYAASGC 830

Query: 386  PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR 445
             E A   F     + G +  V ++  +L  L   G +E +  ++ +L+  G ++  S+I 
Sbjct: 831  YERARAVFN-TMMKDGPSPTVDSINGLLQALIVDGRLEELYVVVQELQDIGFKISKSSIL 889

Query: 446  LIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEE 505
            L++D +  +       K +H  +        F  M LY  + + L + K+  D   +L E
Sbjct: 890  LMLDAFARAGNIFEVKKIYHGMKA----AGYFPSMHLYRVMAQLLCRGKQVRDVEAMLSE 945

Query: 506  MIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            M  +G  PD+  ++ ++  +    D +   +++  ++++G+EPD   + +LI  YC+
Sbjct: 946  MEEAGFKPDLSIWNSVLKMYVAIDDFRKTTQIYQRIKEDGLEPDEDTYNILIVMYCR 1002



 Score = 44.3 bits (103), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 84/211 (39%), Gaps = 22/211 (10%)

Query: 401 GYTHDVYALEKMLTILARHGHV--ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           G   D+ +   ++    + G +   L   L+ ++R  G+R    T   +I     +   +
Sbjct: 286 GCEPDLVSFNTLINARLKAGEMTPNLAIELLTEVRRSGLRPDIITYNTLISACSRASNLE 345

Query: 459 AALKAFHDDRTL--CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
            A+  F DD     C P      +  Y++++    +C     A  +  ++   G  PD  
Sbjct: 346 EAVNVF-DDMVAHHCEPD-----LWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAV 399

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSN---------- 566
           +++  +Y FA +G+ + V+ +   + + G   D   +  +I  Y K   N          
Sbjct: 400 SYNSFLYAFAREGNVEKVKDICEEMVKIGFGKDEMTYNTMIHMYGKQGQNDLALQLYRDM 459

Query: 567 --SNLMPDAATKELLKKSLWKEGRRKEAAAV 595
             S   PD  T  +L  SL K  + +EAA +
Sbjct: 460 KSSGRNPDVITYTVLIDSLGKTNKIEEAAGM 490



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 107/504 (21%), Positives = 189/504 (37%), Gaps = 53/504 (10%)

Query: 85   ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
            AL ++E LK +   S +Q    AL  +L K+Q   +L T + + S+S+ L  + +F    
Sbjct: 658  ALDLLELLKEHTPRS-SQMITEALVVMLCKAQ---QLDTALKEYSNSRELGFTGSFTMFE 713

Query: 145  QWYSTSGDLELVL---STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID- 200
                   + EL       +++ R      S   Y  +M +Y K G      ET   +ID 
Sbjct: 714  ALIQCCLENELFTEASQVFSDMRFCGIKASECLYQSMMLLYCKMG----FPETAHHLIDL 769

Query: 201  ---EGAIPNS-RTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
               +G + N+   Y  +IE    L     A  V   +    I    K +  L+E +    
Sbjct: 770  TETDGTVLNNISVYVDVIEAYGRLKLWQKAESVAGNMRQSCITVNRKVWNALIEAYAASG 829

Query: 257  RFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
             ++ A+++ N M  DG  P                +   N  L+ ++ D R++ +     
Sbjct: 830  CYERARAVFNTMMKDGPSPT---------------VDSINGLLQALIVDGRLEELYVVVQ 874

Query: 317  GSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF--VWTTR 374
               D          G +I+    L   LD  A A  + E       + A   F  +   R
Sbjct: 875  ELQD---------IGFKISKSSILL-MLDAFARAGNIFEVKKIYHGMKAAGYFPSMHLYR 924

Query: 375  LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
            ++ ++L   K           +  + G+  D+     +L +           ++  +++ 
Sbjct: 925  VMAQLLCRGKQVRDVEAMLSEME-EAGFKPDLSIWNSVLKMYVAIDDFRKTTQIYQRIKE 983

Query: 435  DGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCK 494
            DG+     T  ++I  Y    +    L    + RT+ G   K      Y SL+ +  K +
Sbjct: 984  DGLEPDEDTYNILIVMYCRDHRPKEGLVLMDEMRTV-GLEPKLDT---YKSLVASFGKQQ 1039

Query: 495  RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK 554
                A  + EE+  +G   D   +  +M  +   G     Q+LFSM++  GVEP      
Sbjct: 1040 LVEQAEELFEELQSTGCKLDRSFYHIMMKIYRNSGSHSKAQRLFSMMKDEGVEPTIATMH 1099

Query: 555  VLIQAYCKYLSNSNLMPDAATKEL 578
            +L+ +Y      S+  P  A K L
Sbjct: 1100 LLMVSY-----GSSGQPQEAEKVL 1118



 Score = 38.9 bits (89), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 85/409 (20%), Positives = 147/409 (35%), Gaps = 30/409 (7%)

Query: 85  ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
           A  + E L     +S N   L  +  VL K+ +   L   +   +     N    +  +M
Sbjct: 205 AFEVYEWLNLRHWYSPNARMLSTILAVLGKANQ-EPLAVEVFTRAEPSVENTVKVYNAMM 263

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE--AVETFRQVIDEG 202
             Y+ SG    V   ++  R+R       S+N +++   K G+     A+E   +V   G
Sbjct: 264 GVYARSGKFNKVQELFDLMRERGCEPDLVSFNTLINARLKAGEMTPNLAIELLTEVRRSG 323

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY--LILVEGFVGVERFDE 260
             P+  TY  +I        L+ A+ VF  +     +     Y  +I V G  G+    +
Sbjct: 324 LRPDIITYNTLISACSRASNLEEAVNVFDDMVAHHCEPDLWTYNAMISVYGRCGLS--GK 381

Query: 261 AKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREML-----PDKRIKNVRYY 314
           A+ L N++   G FP   +    L      G ++   +   EM+      D+   N   +
Sbjct: 382 AEQLFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGKDEMTYNTMIH 441

Query: 315 EDGSDDDED-----ENDDNNSGVR---IAYGVQLKPWLDPKALANTLDEWS---PEVVSL 363
             G     D       D  +SG     I Y V     +D     N ++E +    E+++ 
Sbjct: 442 MYGKQGQNDLALQLYRDMKSSGRNPDVITYTV----LIDSLGKTNKIEEAAGMMSEMLNT 497

Query: 364 LADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVE 423
                    + L+C   +  K  E    F C +  + G   D  A   ML I  R    +
Sbjct: 498 GVKPTLRTYSALICGYAKAGKPVEAEETFDCML--RSGTRPDQLAYSVMLDIHLRFNEPK 555

Query: 424 LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
                  ++  DG+    S   L++   G + K +   +   D   +CG
Sbjct: 556 RAMTFYKEMIHDGIMPEHSLYELMLRTLGNANKVEDIGRVVRDMEEVCG 604



 Score = 38.9 bits (89), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 34/171 (19%), Positives = 70/171 (40%), Gaps = 16/171 (9%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           +P   + V     M+ + AR G    V  L   +R  G      +   +I+         
Sbjct: 249 EPSVENTVKVYNAMMGVYARSGKFNKVQELFDLMRERGCEPDLVSFNTLIN--------- 299

Query: 459 AALKAFHDDRTLC----GPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
           A LKA      L       + +  L   ++ Y++L+   ++     +A+NV ++M+    
Sbjct: 300 ARLKAGEMTPNLAIELLTEVRRSGLRPDIITYNTLISACSRASNLEEAVNVFDDMVAHHC 359

Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            PD+ T++ ++  +   G     ++LF+ +   G  PDA  +   + A+ +
Sbjct: 360 EPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSFLYAFAR 410


>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic [Vitis vinifera]
          Length = 867

 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 19/195 (9%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           M++IL R G VEL   +     ++G          +I  YG S   D A+K F   ++  
Sbjct: 191 MISILGRLGQVELAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKS-- 248

Query: 472 GPISKFKLMLL-YSSLLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
              S  K  L+ Y++++    K   DF+ A  + +EM+ +G+ PD  TF+ L+      G
Sbjct: 249 ---SGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGG 305

Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKE 577
             +  + LFS +   G+E D + +  L+ A CK             +   ++MP+  T  
Sbjct: 306 LWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYS 365

Query: 578 LLKKSLWKEGRRKEA 592
            +     K GR  EA
Sbjct: 366 TVIDGYAKAGRLDEA 380



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 85/176 (48%), Gaps = 5/176 (2%)

Query: 387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
           E A + F  + Y+ G   D++    +L  + + G ++L  ++++++    +     T   
Sbjct: 308 EAARNLFSEMLYR-GIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYST 366

Query: 447 IIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
           +ID Y  + + D AL  F++ +     + +      Y++LL    K  R  +A+NV +EM
Sbjct: 367 VIDGYAKAGRLDEALNLFNEMKFASIGLDRVS----YNTLLSIYAKLGRFEEALNVCKEM 422

Query: 507 IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
             SGI  D  T++ L+  +  QG  + V+++F  ++   + P+   +  LI  Y K
Sbjct: 423 ESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSK 478



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 68/166 (40%), Gaps = 6/166 (3%)

Query: 113 AKSQRNHELKTLIGDISSSKFLNVS---VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKL 169
           AK+ R  E   L  ++   KF ++    V++  L+  Y+  G  E  L+   E       
Sbjct: 372 AKAGRLDEALNLFNEM---KFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIK 428

Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
               +YN ++  Y K GK  E    F ++  E   PN  TY+ +I+     G    A+EV
Sbjct: 429 KDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEV 488

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           F       +K     Y  L++        + A S L+EM  +G  P
Sbjct: 489 FREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRP 534



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 94/235 (40%), Gaps = 14/235 (5%)

Query: 47  RLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPN----ADSALSIMEALKSN---PNFS 99
           RL     + N   + LN+   +      AL SA       D A+ + E +KS+   PN  
Sbjct: 197 RLGQVELAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLV 256

Query: 100 HNQSTLHALATVLAKSQRNHEL--KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVL 157
              + + A         R  E+  + L   +   +     + F +L+      G  E   
Sbjct: 257 TYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDR-----ITFNSLLAVCGRGGLWEAAR 311

Query: 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217
           + ++E   R       +YN ++    K G+   A +   ++  +  +PN  TY+ +I+  
Sbjct: 312 NLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGY 371

Query: 218 VNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
              G+LD AL +F+ +    I      Y  L+  +  + RF+EA ++  EM   G
Sbjct: 372 AKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSG 426



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 100/257 (38%), Gaps = 44/257 (17%)

Query: 396 VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYG--- 452
            A   GY + VYA   +++   R G+ +   ++   ++S G++    T   +ID  G   
Sbjct: 210 TALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVIDACGKGG 269

Query: 453 -----ISKKADAALK-AFHDDR-------TLCG-------PISKFKLMLL---------Y 483
                 ++  D  L+     DR        +CG         + F  ML          Y
Sbjct: 270 VDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTY 329

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           ++LL  + K  +   A  ++ EM    I+P+V T+S ++  +A  G       LF+ ++ 
Sbjct: 330 NTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKF 389

Query: 544 NGVEPDAYMFKVLIQAY------------CKYLSNSNLMPDAATKELLKKSLWKEGRRKE 591
             +  D   +  L+  Y            CK + +S +  DA T   L     K+G+ +E
Sbjct: 390 ASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEE 449

Query: 592 AAAVEERCEKINDVPSL 608
              V E  +     P+L
Sbjct: 450 VKRVFEEMKAERIFPNL 466



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 83/189 (43%), Gaps = 6/189 (3%)

Query: 69  PFIVTHA-----LRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT 123
           P +VT++        A   D AL++   +K   +   ++ + + L ++ AK  R  E   
Sbjct: 359 PNVVTYSTVIDGYAKAGRLDEALNLFNEMKF-ASIGLDRVSYNTLLSIYAKLGRFEEALN 417

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           +  ++ SS     +V +  L+  Y   G  E V   + E +      +  +Y+ ++ VY+
Sbjct: 418 VCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYS 477

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           K G   EA+E FR+    G   +   Y+ +I+ L   G ++SA+     +    I+    
Sbjct: 478 KGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVV 537

Query: 244 QYLILVEGF 252
            Y  +++ F
Sbjct: 538 TYNSIIDAF 546



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 88/409 (21%), Positives = 156/409 (38%), Gaps = 77/409 (18%)

Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
           G +EL  + +          +  +++ ++S Y ++G   EA++ F  +   G  PN  TY
Sbjct: 199 GQVELAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTY 258

Query: 211 TVMIEHLVNLG-KLDSALEVFSALPLMRIK--RTSKQYLILVEGFVGVERFDEAKSLLNE 267
             +I+     G   + A E+F  +    ++  R +   L+ V G  G+  ++ A++L +E
Sbjct: 259 NAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGL--WEAARNLFSE 316

Query: 268 M------RD--------DGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRI-KNVR 312
           M      +D        D    G  M +A + M EM              P K I  NV 
Sbjct: 317 MLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEM--------------PRKHIMPNVV 362

Query: 313 YYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF--V 370
            Y                             +D  A A  LDE     ++L  + KF  +
Sbjct: 363 TYST--------------------------VIDGYAKAGRLDE----ALNLFNEMKFASI 392

Query: 371 WTTRLVCKVLRHFKSP----ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVD 426
              R+    L    +     E A +  C      G   D      +L    + G  E V 
Sbjct: 393 GLDRVSYNTLLSIYAKLGRFEEALNV-CKEMESSGIKKDAVTYNALLGGYGKQGKYEEVK 451

Query: 427 RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL-MLLYSS 485
           R+  +++++ +     T   +ID Y        A++ F + +      +  K  ++LYS+
Sbjct: 452 RVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKK-----AGLKADVVLYSA 506

Query: 486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
           L+  L K      A++ L+EM   GI P+V T++ ++  F   G  + V
Sbjct: 507 LIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGSAECV 555


>gi|357115308|ref|XP_003559432.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Brachypodium distachyon]
          Length = 570

 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 122/275 (44%), Gaps = 25/275 (9%)

Query: 357 SPEVVSLLADAKFVWTT-RLVCKVLRHFKSP-ETAWHFFCWVAYQPGYTH--DVYALEKM 412
           SPE + +  D   V  + R+V K+LR F S    A+ FF W   Q GY H  D+Y L  M
Sbjct: 109 SPEAIVIAMDCCPVRVSGRMVDKILRRFGSDWVAAFGFFMWAGAQEGYCHHADLYNL--M 166

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
           + IL +    +L+  LI ++   G  +  +T+  ++     + +   A+ AF+      G
Sbjct: 167 VDILGKFKQFDLLWGLIRQMDEIGCLVSLATMTKVMRRLAGANRWTDAIDAFNKMDQF-G 225

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV-PDVQTFSGLMYHFALQGDE 531
            +   K M   ++LL TL K K    A  V +E+   G+V PD  +F+ L++ +      
Sbjct: 226 VVRDTKAM---NALLDTLCKEKSVKRARGVFQEL--RGVVPPDESSFNTLVHGWCQARML 280

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELL 579
              +     + ++G  P    +  LI+AYC              + +    P+  T  ++
Sbjct: 281 NEARDTMKEMEEHGFSPSVITYTSLIEAYCMEKDFQTVYAILNEMCSKGCRPNVITYTIV 340

Query: 580 KKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHI 614
             +L K GR +EA  V ++ ++   VP  +    I
Sbjct: 341 MHALGKAGRTQEALDVFDKVKRDGCVPDASFYNSI 375



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 78/175 (44%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           ++S+ + L     +++  +E +  + ++    F    + + +L++ Y    D + V +  
Sbjct: 263 DESSFNTLVHGWCQARMLNEARDTMKEMEEHGFSPSVITYTSLIEAYCMEKDFQTVYAIL 322

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           NE   +    +  +Y IVM    K G+  EA++ F +V  +G +P++  Y  +I  L   
Sbjct: 323 NEMCSKGCRPNVITYTIVMHALGKAGRTQEALDVFDKVKRDGCVPDASFYNSIIYILGRA 382

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           G+L+ A  VF  +    I  T   +  ++       + + A  +L +M +    P
Sbjct: 383 GRLEDANSVFDEMCRTGIPPTVAIFNTMISAACDHSQAENALKILVKMEEQSCKP 437



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 42/206 (20%), Positives = 84/206 (40%), Gaps = 18/206 (8%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G++  V     ++         + V  ++ ++ S G R    T  +++   G + +   A
Sbjct: 294 GFSPSVITYTSLIEAYCMEKDFQTVYAILNEMCSKGCRPNVITYTIVMHALGKAGRTQEA 353

Query: 461 LKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           L  F    R  C P + F     Y+S++  L +  R  DA +V +EM  +GI P V  F+
Sbjct: 354 LDVFDKVKRDGCVPDASF-----YNSIIYILGRAGRLEDANSVFDEMCRTGIPPTVAIFN 408

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNS 567
            ++         +   K+   + +   +PD   +  L++  CK            ++   
Sbjct: 409 TMISAACDHSQAENALKILVKMEEQSCKPDIKTYTPLLKLCCKRQWMKILPFLICHMFRK 468

Query: 568 NLMPDAATKELLKKSLWKEGRRKEAA 593
           ++ PD +T  LL   L + G+  ++ 
Sbjct: 469 DISPDFSTYILLVTWLCRNGKPAQSC 494


>gi|147776740|emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera]
          Length = 422

 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 104/252 (41%), Gaps = 26/252 (10%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
           W P V         + +   V K++     P  A   F   + QP + H   +   ++  
Sbjct: 2   WEPHV-----KPSPIGSPSRVQKLIASQSDPLLAKEIFDLASLQPNFKHSYSSFHILILK 56

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPI 474
           L       L+  L+ +L+S+   +  S    II+ YG +   D ALK FH        P+
Sbjct: 57  LGWARQFSLMQDLLMRLKSEQYSINPSLFSDIIEIYGEANLPDQALKTFHSMLQFHSKPL 116

Query: 475 SKFKLMLLYSSLLRTLTKCKRDF--DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
            K      + + L  L    R++   A ++ +     G+ PD ++++ LM  F   GD  
Sbjct: 117 PK------HLNXLLQLLVSHRNYIRPAFDLFKSAHRYGVSPDTKSYNILMSAFCFNGDLS 170

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLK 580
           I   LF+ + +  V PD   +++L+Q  C+             + N   +PDA +   L 
Sbjct: 171 IAYTLFNQMFKRDVAPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGYVPDALSYTTLL 230

Query: 581 KSLWKEGRRKEA 592
            SL ++ + KEA
Sbjct: 231 NSLCRKKKLKEA 242



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 73/162 (45%), Gaps = 1/162 (0%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           LM  +  +GDL +  + +N+  +R      ESY I+M    +  +   AV+    ++++G
Sbjct: 159 LMSAFCFNGDLSIAYTLFNQMFKRDVAPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKG 218

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +P++ +YT ++  L    KL  A ++   + +         Y  ++ GF    R  +A 
Sbjct: 219 YVPDALSYTTLLNSLCRKKKLKEAYKLLCRMKVKGCNPDIVHYNTVILGFCREGRXLDAC 278

Query: 263 SLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREML 303
            +L +M  +G  P   +    +  + + G    A  ++ EML
Sbjct: 279 KVLEDMPSNGCSPNLMSYGTLVSGLCDQGLYDEAKNYVEEML 320



 Score = 42.4 bits (98), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 92/227 (40%), Gaps = 36/227 (15%)

Query: 85  ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKF-LNVSV----- 138
           A  I +     PNF H+ S+ H L   L  +++   ++ L+  + S ++ +N S+     
Sbjct: 30  AKEIFDLASLQPNFKHSYSSFHILILKLGWARQFSLMQDLLMRLKSEQYSINPSLFSDII 89

Query: 139 --------------NFMNLMQWYST------SGDLELVLSTWNEYRQRAKLLS------- 171
                          F +++Q++S       +  L+L++S  N  R    L         
Sbjct: 90  EIYGEANLPDQALKTFHSMLQFHSKPLPKHLNXLLQLLVSHRNYIRPAFDLFKSAHRYGV 149

Query: 172 ---TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALE 228
              T+SYNI+MS +   G    A   F Q+      P+  +Y ++++ L    +++ A++
Sbjct: 150 SPDTKSYNILMSAFCFNGDLSIAYTLFNQMFKRDVAPDVESYRILMQGLCRKSQVNRAVD 209

Query: 229 VFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +   +        +  Y  L+      ++  EA  LL  M+  G  P
Sbjct: 210 LLEDMLNKGYVPDALSYTTLLNSLCRKKKLKEAYKLLCRMKVKGCNP 256



 Score = 42.0 bits (97), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 56/144 (38%), Gaps = 1/144 (0%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YN V+  + + G+  +A +    +   G  PN  +Y  ++  L + G  D A      + 
Sbjct: 261 YNTVILGFCREGRXLDACKVLEDMPSNGCSPNLMSYGTLVSGLCDQGLYDEAKNYVEEML 320

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA-LERMQEMGFIQ 293
                     +  L+ GF  V + +EA  +L EM   G+       VA + R+ E+  + 
Sbjct: 321 SKGFSPHFSVFHALINGFCNVGKLEEACEVLXEMLRHGEAXHTETWVAIIPRICEVDKLV 380

Query: 294 GANEFLREMLPDKRIKNVRYYEDG 317
                  E L  +   N R  E G
Sbjct: 381 RMENIFDEXLKLEITPNTRLVEAG 404



 Score = 40.8 bits (94), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 40/80 (50%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y  L++ L +  +   A+++LE+M+  G VPD  +++ L+     +   K   KL   ++
Sbjct: 191 YRILMQGLCRKSQVNRAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLKEAYKLLCRMK 250

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
             G  PD   +  +I  +C+
Sbjct: 251 VKGCNPDIVHYNTVILGFCR 270


>gi|255547043|ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546183|gb|EEF47685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 840

 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 88/449 (19%), Positives = 182/449 (40%), Gaps = 77/449 (17%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           S  S+N +MS Y K G    A   F  ++  G +P++ +Y ++I  L   G +  AL++ 
Sbjct: 280 SVVSFNTIMSRYCKLGFVDVAKSFFCMMLKHGLLPDAYSYNILIHGLCIAGSMGEALDLK 339

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEM 289
           + +    ++     Y IL +GF  +   + A +++ +M   G  P      V +    ++
Sbjct: 340 NDMENHGLEPDMVTYNILAKGFRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQI 399

Query: 290 GFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKAL 349
           G ++ A +  +EM                               I++G QL         
Sbjct: 400 GNVEEALKLYKEM-------------------------------ISHGFQL--------- 419

Query: 350 ANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYAL 409
                       S+++    + +   +CK     +  + A+  FC +    G   D+   
Sbjct: 420 ------------SIISSTVLLGS---LCKS----RQVDVAFKLFCEMEAN-GLRPDLITY 459

Query: 410 EKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRT 469
             ++  L + G V+    L  K+ S+ + +P S I   I   G+ +K   +    + D  
Sbjct: 460 STLIHGLCKQGEVQQAILLYEKMCSNRI-IPNSLIHGAI-LMGLCEKGKISQARMYFDYL 517

Query: 470 LCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
           +   +S    ++LY+ ++    K     +A+ + +++   GI P + TF+ LMY F +  
Sbjct: 518 ITSNLSLD--IILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINR 575

Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM------------PDAATKE 577
                ++L   ++ +G+EP+A  +  L+  YC+  +  +L+            P   T  
Sbjct: 576 KLSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYT 635

Query: 578 LLKKSLWKEGRRKEAAAVEERCEKINDVP 606
           ++ K L K+ + +E+  + E  + +   P
Sbjct: 636 VVIKGLCKQWKLQESCQLLEDMDAVGLTP 664



 Score = 46.6 bits (109), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 29/134 (21%), Positives = 62/134 (46%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           +V +  LM  Y   G+++ +L   +E + +A   +  +Y +V+    K  K  E+ +   
Sbjct: 596 AVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQLLE 655

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
            +   G  P+  +Y  +I+       +  A +++  + L  ++ TS  Y IL+ GF    
Sbjct: 656 DMDAVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTSVTYNILINGFCVYG 715

Query: 257 RFDEAKSLLNEMRD 270
              +A +LL  +++
Sbjct: 716 DLKDADNLLVSLQN 729



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 34/161 (21%), Positives = 63/161 (39%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L +  R  +      D    +F    V+F  +M  Y   G +++  S +    +   L  
Sbjct: 256 LCRQSRFQDAVLFFQDTEGKEFQPSVVSFNTIMSRYCKLGFVDVAKSFFCMMLKHGLLPD 315

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
             SYNI++      G   EA++    + + G  P+  TY ++ +    LG ++ A  +  
Sbjct: 316 AYSYNILIHGLCIAGSMGEALDLKNDMENHGLEPDMVTYNILAKGFRLLGLINGAWNIIQ 375

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
            + +         Y +L+ G   +   +EA  L  EM   G
Sbjct: 376 KMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMISHG 416



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 66/392 (16%), Positives = 154/392 (39%), Gaps = 36/392 (9%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y +++  + + G   EA++ ++++I  G   +  + TV++  L    ++D A ++F  +
Sbjct: 388 TYTVLICGHCQIGNVEEALKLYKEMISHGFQLSIISSTVLLGSLCKSRQVDVAFKLFCEM 447

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA-LERMQEMGFI 292
               ++     Y  L+ G        +A  L  +M  +   P   +  A L  + E G I
Sbjct: 448 EANGLRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKI 507

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
             A  +   ++      ++  Y    D      +   +       V+L   L  K ++ T
Sbjct: 508 SQARMYFDYLITSNLSLDIILYNIMIDGYIKRGNTREA-------VKLYKQLGEKGISPT 560

Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
           +  ++  +     + K     RL+  +  H   P               YT        +
Sbjct: 561 IVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNAV-----------TYT-------TL 602

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK--KADAALKAFHD-DRT 469
           + +    G+++ +  L++++++  +     T  ++I   G+ K  K   + +   D D  
Sbjct: 603 MNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIK--GLCKQWKLQESCQLLEDMDAV 660

Query: 470 LCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
              P       + Y+++++   K +    A  + ++M+   + P   T++ L+  F + G
Sbjct: 661 GLTPDQ-----VSYNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTSVTYNILINGFCVYG 715

Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           D K    L   ++   V  + Y +  +I+A+C
Sbjct: 716 DLKDADNLLVSLQNRKVNLNKYAYTTIIKAHC 747



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 12/83 (14%)

Query: 513 PDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC----------- 561
           P V +F+ +M  +   G   + +  F M+ ++G+ PDAY + +LI   C           
Sbjct: 279 PSVVSFNTIMSRYCKLGFVDVAKSFFCMMLKHGLLPDAYSYNILIHGLCIAGSMGEALDL 338

Query: 562 -KYLSNSNLMPDAATKELLKKSL 583
              + N  L PD  T  +L K  
Sbjct: 339 KNDMENHGLEPDMVTYNILAKGF 361



 Score = 40.0 bits (92), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 82/211 (38%), Gaps = 9/211 (4%)

Query: 72  VTHALRSAPNADSALSIMEALKSN---PNFSHNQSTLHALATVLAKSQRNHELKTLIGDI 128
           + H L        A+ + E + SN   PN   + + L  L      SQ       LI   
Sbjct: 462 LIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLI--- 518

Query: 129 SSSKFLNVSVNFMNLM-QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
             +  L++ +   N+M   Y   G+    +  + +  ++    +  ++N +M  +    K
Sbjct: 519 --TSNLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRK 576

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
             +A      +   G  PN+ TYT ++      G + S LE+ S +    I  T   Y +
Sbjct: 577 LSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTV 636

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPGRA 278
           +++G     +  E+  LL +M   G  P + 
Sbjct: 637 VIKGLCKQWKLQESCQLLEDMDAVGLTPDQV 667


>gi|147821100|emb|CAN70963.1| hypothetical protein VITISV_038268 [Vitis vinifera]
          Length = 844

 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 100/496 (20%), Positives = 193/496 (38%), Gaps = 76/496 (15%)

Query: 67  LDPFIVTHALRSAPNADSALSIME-ALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           L P  V   +    N D AL I + A K + NF+HN  T  A+   L+K++    ++TLI
Sbjct: 99  LSPKRVVSMISRQQNLDLALQIFDHAGKFHRNFAHNYETYLAMIEKLSKARAFEPMETLI 158

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
             +  S+       F+ +++ Y  +G  +L + T+          S  S+N +++   + 
Sbjct: 159 SQLHKSQIKCGENLFITVIRNYGFAGRPKLAIRTFLRIPSFGLQPSVRSFNTLLNTLVQN 218

Query: 186 GKNFEAVE-TFRQVIDE-GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
            K F+ V   F+    + G +PN  T  ++++ L     +D+A+ V   +P M       
Sbjct: 219 -KRFDLVHLMFKNCRKKFGIVPNVFTCNILVKALCKKNDIDAAIRVLEEMPAMGFIPNVV 277

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREM 302
            Y  ++ G+V       A+ +  E+ D G  P      + ++   + G    A + + EM
Sbjct: 278 TYTTILGGYVSKGDMVGARRVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEM 337

Query: 303 LPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVS 362
                             +E+  + N+    + YGV ++ +   K         S EV++
Sbjct: 338 ------------------EENRVEPND----VTYGVIIEAYCKEKK--------SGEVLN 367

Query: 363 LLAD---AKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH 419
           LL D    K++ ++ L C+V                                 + +L   
Sbjct: 368 LLDDMLEKKYIPSSALCCRV---------------------------------IDMLCEE 394

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL 479
           G VE+   L  KL         +    +I +     K   A K F +      P +    
Sbjct: 395 GKVEVACELWKKLLKKNCTPDNAITSTLIHWLCKEGKVWEARKLFDEFEKGSIPST---- 450

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
            L Y++L+  + +     +A  + + M+  G VP+  T++ L+  F   G+ +   ++  
Sbjct: 451 -LTYNALIAGMCEGGELPEAARLWDNMVEKGCVPNAFTYNMLIKGFCKVGNAREGIRVME 509

Query: 540 MVRQNGVEPDAYMFKV 555
            +  NG  P+   + +
Sbjct: 510 EMLDNGCLPNKATYAI 525



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 486 LLRTLTKCKRDFDA-INVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544
           L++ L K K D DA I VLEEM   G +P+V T++ ++  +  +GD    +++F  +   
Sbjct: 247 LVKALCK-KNDIDAAIRVLEEMPAMGFIPNVVTYTTILGGYVSKGDMVGARRVFGEILDR 305

Query: 545 GVEPDAYMFKVLIQAYCK 562
           G  PD   + +L+  YCK
Sbjct: 306 GWVPDPTTYTILMDGYCK 323



 Score = 40.0 bits (92), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 38/231 (16%), Positives = 89/231 (38%), Gaps = 34/231 (14%)

Query: 14  KAFTQLQTRSFVRAPFTNKLAL--YLRRAQLIDSIRLA---------------------- 49
           + F ++  R +V  P T  + +  Y ++ + +D++++                       
Sbjct: 297 RVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIEAY 356

Query: 50  VRSNSSNSLSSLLNDRLLDPFIVTHALRS--------APNADSALSIMEALKSNPNFSHN 101
            +   S  + +LL+D L   +I + AL              + A  + + L    N + +
Sbjct: 357 CKEKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKKLLKK-NCTPD 415

Query: 102 QSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWN 161
            +    L   L K  +  E + L  +      +  ++ +  L+      G+L      W+
Sbjct: 416 NAITSTLIHWLCKEGKVWEARKLFDEFEKGS-IPSTLTYNALIAGMCEGGELPEAARLWD 474

Query: 162 EYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
              ++  + +  +YN+++  + K G   E +    +++D G +PN  TY +
Sbjct: 475 NMVEKGCVPNAFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNKATYAI 525


>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
 gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 92/217 (42%), Gaps = 1/217 (0%)

Query: 99  SHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLS 158
           +HN  TL+ L   L +    H   +++  +        SV F  L+      G ++  + 
Sbjct: 118 AHNDYTLNILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVE 177

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
            +NE   R  + +T ++ I++ V  K G   EA   F  + ++G  PN  TY  ++    
Sbjct: 178 LFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYC 237

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA 278
              +++ A +VF  +       +   Y IL+ G+    R DEAK+LL +M +    P   
Sbjct: 238 LRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTV 297

Query: 279 M-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
                ++ +     +  A E  ++M     + N+R Y
Sbjct: 298 TYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTY 334



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 85/175 (48%), Gaps = 6/175 (3%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  Y  S  ++   +   +  ++  + +T +YN +M          EA E F+++   G
Sbjct: 267 LINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSG 326

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +PN RTY+++++ L   G L+ AL++ +++   +++     Y IL++G     + + AK
Sbjct: 327 MLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAK 386

Query: 263 SLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREM-----LPDKRIKNV 311
            L +++  +G  P  R   + ++ + + G    A +  R+M     LPD    NV
Sbjct: 387 ELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNV 441



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 77/163 (47%)

Query: 113 AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
            KS+R  E K L+  +S  + +  +V +  LMQ    +  L      + +      L + 
Sbjct: 272 CKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNL 331

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            +Y+I++    K G   EA++    + +    P+   Y ++I+ +   GKL+ A E+FS 
Sbjct: 332 RTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSK 391

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           L    I+ + + Y I+++G +     DEA  L  +M DDG  P
Sbjct: 392 LFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLP 434



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/220 (20%), Positives = 92/220 (41%), Gaps = 16/220 (7%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G  H+ Y L  ++  L R  H+     +++K+   G++    T   +I+      +   A
Sbjct: 116 GVAHNDYTLNILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEA 175

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           ++ F++   + G        + ++ L+  L K     +A  V E M   G+ P++ T++ 
Sbjct: 176 VELFNE---MAGR-DAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNA 231

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSN 568
           LM  + L+ +     K+F ++   G  P  + + +LI  YCK             +S   
Sbjct: 232 LMNGYCLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKE 291

Query: 569 LMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
           L+P+  T   L + L       EA  + ++      +P+L
Sbjct: 292 LIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNL 331



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 84/177 (47%), Gaps = 24/177 (13%)

Query: 446 LIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM---LLYSSLLRTLTKCKRDFDAINV 502
           ++I+ Y  S++ D A       + L   +S+ +L+   + Y++L++ L       +A  +
Sbjct: 266 ILINGYCKSRRIDEA-------KALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQEL 318

Query: 503 LEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA--- 559
            ++M  SG++P+++T+S L+      G  +   KL + +++  +EPD  ++ +LIQ    
Sbjct: 319 FKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFI 378

Query: 560 ----------YCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
                     + K  +N  + P   T  ++ K L KEG   EA  +  + E    +P
Sbjct: 379 AGKLEVAKELFSKLFANG-IRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLP 434



 Score = 46.6 bits (109), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 17/203 (8%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           S  SY+I+++ Y K+ +  EA     Q+ ++  IPN+ TY  +++ L +   L  A E+F
Sbjct: 260 SVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELF 319

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEM 289
             +    +    + Y IL++G       +EA  LL  M++    P   +  + ++ M   
Sbjct: 320 KKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIA 379

Query: 290 GFIQGANEFLREMLPDKRIKNVRYY--------EDGSDDD-----EDENDDNNSGVRIAY 336
           G ++ A E   ++  +    +VR Y        ++G  D+         DD       +Y
Sbjct: 380 GKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSY 439

Query: 337 GVQLKPWL---DPKALANTLDEW 356
            V ++ +L   DP      +DE 
Sbjct: 440 NVIIQGFLQNQDPSTAIQLIDEM 462



 Score = 45.8 bits (107), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 70/168 (41%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T + L   L  +    E + L   + SS  L     +  L+      G LE  L   
Sbjct: 295 NTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLL 354

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
              ++R        YNI++      GK   A E F ++   G  P+ RTY +MI+ L+  
Sbjct: 355 TSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKE 414

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           G  D A ++F  +        S  Y ++++GF+  +    A  L++EM
Sbjct: 415 GLSDEAYKLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEM 462



 Score = 43.1 bits (100), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHA--LRSAPNADSALSIMEALK--SNPN 97
           LI+    + R + + +L + ++++ L P  VT+   ++   +A S L   E  K   +  
Sbjct: 267 LINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSG 326

Query: 98  FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVL 157
              N  T   L   L K     E   L+  +   K     V +  L+Q    +G LE+  
Sbjct: 327 MLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAK 386

Query: 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217
             +++        S  +YNI++    K G + EA + FR++ D+G +P+S +Y V+I+  
Sbjct: 387 ELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVIIQGF 446

Query: 218 VNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
           +      +A+++   +   R    S  + +L++    +E  DE
Sbjct: 447 LQNQDPSTAIQLIDEMVGRRFSADSSTFKMLLD----LESHDE 485


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 86/428 (20%), Positives = 171/428 (39%), Gaps = 57/428 (13%)

Query: 169 LLSTESYNIVMSVYAKTGKNFEAVET----FRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
           L+S +S N+ +   A+   +F+ + T    FR+  + G   N+ +Y +++  L  LGK+ 
Sbjct: 213 LVSVDSCNLFL---ARLSNSFDGIRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVK 269

Query: 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVAL 283
            A  +   +           Y ++V+G+  VE+  +   L+ E++  G  P +      +
Sbjct: 270 EAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSII 329

Query: 284 ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSG-VRIAYGVQLKP 342
             + + G +  A + LR M      KN R + D        +    SG V + Y  +L  
Sbjct: 330 SFLCKTGRVVEAEQVLRVM------KNQRIFPDNVVYTTLISGFGKSGNVSVEY--KLFD 381

Query: 343 WLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGY 402
            +  K +      ++  +  L    K V   +L  ++L     P+       + A   GY
Sbjct: 382 EMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEV----TYTALIDGY 437

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALK 462
                          + G ++    L  ++   G+     T   ++D      + D A +
Sbjct: 438 --------------CKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANE 483

Query: 463 AFHDDRTLCGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
             H+       +S+  L   +  Y++L+  L K      A+ ++EEM  +G  PD  T++
Sbjct: 484 LLHE-------MSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYT 536

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNS 567
            +M  +   G+     +L  ++   G++P    F VL+  +C            K++ + 
Sbjct: 537 TIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDK 596

Query: 568 NLMPDAAT 575
            +MP+A T
Sbjct: 597 GIMPNATT 604



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 102/219 (46%), Gaps = 2/219 (0%)

Query: 85  ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
            L +ME L+       NQ T +++ + L K+ R  E + ++  + + +    +V +  L+
Sbjct: 306 VLKLMEELQRK-GLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLI 364

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204
             +  SG++ +    ++E +++  +    +Y  ++    + GK  EA + F +++ +G  
Sbjct: 365 SGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLK 424

Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL 264
           P+  TYT +I+     G++  A  + + +    +      Y  LV+G       D A  L
Sbjct: 425 PDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANEL 484

Query: 265 LNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREM 302
           L+EM + G  P      AL   + ++G I+ A + + EM
Sbjct: 485 LHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEM 523



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 100/238 (42%), Gaps = 10/238 (4%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNP 96
           L+D +      + +N L   ++++ L P + T+      L    N + A+ +ME +    
Sbjct: 468 LVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAG 527

Query: 97  NF--SHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
            F  +   +T+      + +  + HEL  ++ D      +   V F  LM  +  SG LE
Sbjct: 528 FFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTI---VTFNVLMNGFCMSGMLE 584

Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
                      +  + +  ++N +M  Y         +E ++ +  +G +P++ TY ++I
Sbjct: 585 DGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILI 644

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +       +  A  +   +       T+  Y  L++GF   ++F+EA+ L  EMR  G
Sbjct: 645 KGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHG 702



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/236 (18%), Positives = 97/236 (41%), Gaps = 6/236 (2%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNP 96
           LID    A     + SL + + ++ L P +VT+      L      D A  ++  + S  
Sbjct: 433 LIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEM-SEK 491

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
               N  T +AL   L K     +   L+ ++  + F   ++ +  +M  Y   G++   
Sbjct: 492 GLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKA 551

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
                    +    +  ++N++M+ +  +G   +     + ++D+G +PN+ T+  +++ 
Sbjct: 552 HELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQ 611

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
                 + + +E++  +    +   +  Y IL++G        EA  L  EM + G
Sbjct: 612 YCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKG 667



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 84/213 (39%), Gaps = 36/213 (16%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR- 196
           V++  ++  Y     L  VL    E +++    +  +YN ++S   KTG+  EA +  R 
Sbjct: 288 VSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRV 347

Query: 197 ------------------------------QVIDE----GAIPNSRTYTVMIEHLVNLGK 222
                                         ++ DE      +P+  TYT MI  L   GK
Sbjct: 348 MKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGK 407

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA 282
           +  A ++FS +    +K     Y  L++G+       EA SL N+M + G  P      A
Sbjct: 408 VVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTA 467

Query: 283 L-ERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
           L + + + G +  ANE L EM       NV  Y
Sbjct: 468 LVDGLCKCGEVDIANELLHEMSEKGLQPNVCTY 500



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/225 (20%), Positives = 93/225 (41%), Gaps = 11/225 (4%)

Query: 58  LSSLLNDRLLDPFIVTHALRSAPNADSALSI-------MEALKSNPNFSHNQSTLHALAT 110
           L  + N R+    +V   L S       +S+       M+  K  P+F    S +H L  
Sbjct: 345 LRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLC- 403

Query: 111 VLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLL 170
              ++ +  E + L  ++ S       V +  L+  Y  +G+++   S  N+  ++    
Sbjct: 404 ---QAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTP 460

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           +  +Y  ++    K G+   A E   ++ ++G  PN  TY  +I  L  +G ++ A+++ 
Sbjct: 461 NVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLM 520

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             + L      +  Y  +++ +  +    +A  LL  M D G  P
Sbjct: 521 EEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQP 565



 Score = 46.6 bits (109), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 41/209 (19%), Positives = 85/209 (40%), Gaps = 16/209 (7%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   + Y    +++ L + G V   ++++  +++  +         +I  +G S      
Sbjct: 317 GLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVE 376

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
            K F D+      +  F   + Y+S++  L +  +  +A  +  EM+  G+ PD  T++ 
Sbjct: 377 YKLF-DEMKRKKIVPDF---VTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTA 432

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSN 568
           L+  +   G+ K    L + + + G+ P+   +  L+   CK             +S   
Sbjct: 433 LIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKG 492

Query: 569 LMPDAATKELLKKSLWKEGRRKEAAAVEE 597
           L P+  T   L   L K G  ++A  + E
Sbjct: 493 LQPNVCTYNALINGLCKVGNIEQAVKLME 521



 Score = 45.4 bits (106), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 2/150 (1%)

Query: 136 VSVNFMNL-MQWYSTSGD-LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE 193
           VSV+  NL +   S S D +      + EY +     +T SYNI++ +  + GK  EA  
Sbjct: 214 VSVDSCNLFLARLSNSFDGIRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHS 273

Query: 194 TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
              Q+   G +P+  +Y+V+++    + +L   L++   L    +K     Y  ++    
Sbjct: 274 LLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLC 333

Query: 254 GVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
              R  EA+ +L  M++   FP   +   L
Sbjct: 334 KTGRVVEAEQVLRVMKNQRIFPDNVVYTTL 363



 Score = 43.1 bits (100), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 27/138 (19%), Positives = 64/138 (46%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+      G++++     +E  ++    +  +YN +++   K G   +AV+   +
Sbjct: 463 VTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEE 522

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G  P++ TYT +++    +G++  A E+   +    ++ T   + +L+ GF     
Sbjct: 523 MDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGM 582

Query: 258 FDEAKSLLNEMRDDGKFP 275
            ++ + L+  M D G  P
Sbjct: 583 LEDGERLIKWMLDKGIMP 600



 Score = 38.9 bits (89), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 12/117 (10%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ +L  L +  +  +A ++L +M F G VPDV ++S ++  +        V KL   ++
Sbjct: 255 YNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQ 314

Query: 543 QNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEG 587
           + G++P+ Y +  +I   CK             + N  + PD      L     K G
Sbjct: 315 RKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSG 371


>gi|296089005|emb|CBI38708.3| unnamed protein product [Vitis vinifera]
          Length = 466

 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 112/483 (23%), Positives = 194/483 (40%), Gaps = 71/483 (14%)

Query: 65  RLLDPFIVTHALRSAPNADSALSIMEALKSN-PNFSHNQSTLHALATVLAKSQRNHELKT 123
           R L P  ++  +R+  N  +AL I    KS  PN+ HN      +  VL  S R  E++ 
Sbjct: 7   RFLIPTQLSQMIRTQKNPLTALKIFNEAKSKFPNYRHNGPVYATMINVLGSSGRIAEMRE 66

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           +I  +           F ++M+ Y+ +G ++  +S +    Q   +  T S+N ++ +  
Sbjct: 67  VIDQMKQDSCECKDSVFSSVMKTYARAGMVDEAVSLFKTLPQFNCVNWTGSFNTLLRILV 126

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSR--TYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
           K  K   A   F +    G    SR  +  ++++ L  + + D AL VF  +        
Sbjct: 127 KESKLETACRLFLEH-SCGWEVKSRIGSLNLLMDALCQINRSDLALHVFQEMRYQCCSPD 185

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEM--RDDGKFPGR---AMRVALERMQEMGFIQGAN 296
            + Y IL+ G     R +EA  LL  M  R   K  G    A R  L+ + + G ++ A 
Sbjct: 186 KESYRILMRGLCEDGRLNEATHLLYSMFWRISQKGGGEDIAAYRTLLDALCDNGHVEEAL 245

Query: 297 EFLREMLPD-----KRIK---NVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKA 348
           E L ++L       KR +   ++ Y  +G D +  +   N + +R   GV          
Sbjct: 246 EILGKVLKKGLKAPKRCRGHLDLSYCCNGEDIERTKGLINEALIR--GGVP--------- 294

Query: 349 LANTLDEWSPEVVSLLADAKFVWTTRLVCKVL-RHFKSP----ETAWHFFC-W-VAYQPG 401
              ++  +S   + L ++ K     +++ ++  R FK      E      C W  A+  G
Sbjct: 295 ---SMASYSAMAIDLYSERKIGEANQVLDEMRDRGFKPSLSIYEAKIAALCRWKSAFAVG 351

Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI--RLIIDFYGISKKADA 459
           Y      LEKM   +      E    L+  L  DG  +  S I  R++I      + +  
Sbjct: 352 Y------LEKMARQVGCVADKETYSILVDGLCCDGRFVEASGILERMLI------RSSSP 399

Query: 460 ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
            ++                    Y++L+R L    R +DA+  LEEM+  G +P V  + 
Sbjct: 400 GVET-------------------YNTLIRGLCLMGRQYDAVIWLEEMVVQGKLPAVSVWD 440

Query: 520 GLM 522
            L+
Sbjct: 441 SLV 443


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 94/463 (20%), Positives = 185/463 (39%), Gaps = 62/463 (13%)

Query: 174 SYNIVMSV------YAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSA 226
           SY +V++V       ++   N E +E   +V  E  I  N+ +Y ++I  L  LGK+  A
Sbjct: 218 SYGLVVTVDSCNAFLSRIANNSEGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEA 277

Query: 227 LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALER 285
             +   +           Y  +++G+  +    +A  L+++M+  G  P R      +  
Sbjct: 278 HRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILL 337

Query: 286 MQEMGFIQGANEFLREMLPDKRI-KNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWL 344
           + ++G    A + LREM+  K I  NV Y               +   ++ +      W 
Sbjct: 338 LCKIGKSFEAEKVLREMMSQKIIPDNVVY-----------TTLIHGFFKLGHVRTANKWF 386

Query: 345 D---PKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVL-RHFKSPETAW----HFFCWV 396
           D    K ++     ++  +       K +    L  +++ R  K  E  +      +C  
Sbjct: 387 DEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKA 446

Query: 397 A------------YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI 444
                         Q G T ++     ++  L +HG ++  + L+ ++R  G++L     
Sbjct: 447 GEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIY 506

Query: 445 RLIIDFYGISKKA--DAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAIN 501
             +++  GI K    + A+K   + +     P +     + Y++++    +      A  
Sbjct: 507 NSMVN--GICKAGNIEQAIKLMKEMEVAGIDPDA-----ITYTTVIDAYCRLGDIDKAHK 559

Query: 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           +L+EM+  G+ P V TF+ LM  F + G  +   +L   + + G+ PDA  +  L++ +C
Sbjct: 560 LLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHC 619

Query: 562 ------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                       K + N  + PD+ T  +L K   K    KEA
Sbjct: 620 IRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEA 662



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 69/138 (50%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V++  ++  Y   G+L+  L   ++ + +    +  +YN ++ +  K GK+FEA +  R+
Sbjct: 294 VSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLRE 353

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++ +  IP++  YT +I     LG + +A + F  +   +I      Y  L++GF    +
Sbjct: 354 MMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGK 413

Query: 258 FDEAKSLLNEMRDDGKFP 275
             E ++L +EM   G  P
Sbjct: 414 VIEPQNLFHEMISRGLKP 431



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 85/188 (45%), Gaps = 1/188 (0%)

Query: 85  ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
           AL +M+ ++       N+ T +++  +L K  ++ E + ++ ++ S K +  +V +  L+
Sbjct: 312 ALKLMDDMQIK-GLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLI 370

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204
             +   G +      ++E   +       +Y  ++  + + GK  E    F ++I  G  
Sbjct: 371 HGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLK 430

Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL 264
           P+  TYT +I+     G++ +A  + + +  M +      Y  L++G       D A  L
Sbjct: 431 PDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANEL 490

Query: 265 LNEMRDDG 272
           L+EMR  G
Sbjct: 491 LDEMRKKG 498



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 1/167 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + +  L+Q +   G +    + ++E   R       +Y  ++ VY K G+   A     +
Sbjct: 399 ITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNE 458

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++  G  PN  TY  +I+ L   G+LD+A E+   +    ++     Y  +V G      
Sbjct: 459 MVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGN 518

Query: 258 FDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREML 303
            ++A  L+ EM   G  P        ++    +G I  A++ L+EML
Sbjct: 519 IEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEML 565



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 93/238 (39%), Gaps = 20/238 (8%)

Query: 387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
           E A   FC    + G + +  +   ++  L R G V+   RL+ ++          +   
Sbjct: 243 EMAIKVFC----EYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYST 298

Query: 447 IIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
           +ID Y    +   ALK   D +      +++     Y+S++  L K  + F+A  VL EM
Sbjct: 299 VIDGYCHLGELKKALKLMDDMQIKGLKPNRYT----YNSIILLLCKIGKSFEAEKVLREM 354

Query: 507 IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY---CKY 563
           +   I+PD   ++ L++ F   G  +   K F  +    + PD   +  LIQ +    K 
Sbjct: 355 MSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKV 414

Query: 564 LSNSNLM---------PDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRG 612
           +   NL          PD  T   L     K G    A ++     ++   P++   G
Sbjct: 415 IEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYG 472



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 65/138 (47%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+      G+L+      +E R++   L+   YN +++   K G   +A++  ++
Sbjct: 469 VTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKE 528

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G  P++ TYT +I+    LG +D A ++   +    ++ T   + +L+ GF  +  
Sbjct: 529 MEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGM 588

Query: 258 FDEAKSLLNEMRDDGKFP 275
            ++   LL  M + G  P
Sbjct: 589 LEDGDRLLGWMLEKGIVP 606



 Score = 43.1 bits (100), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 49/281 (17%), Positives = 116/281 (41%), Gaps = 19/281 (6%)

Query: 29  FTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHA-----LRSAPNAD 83
           +T  + +Y +  +++++           SL + +    + P IVT+      L      D
Sbjct: 436 YTTLIDVYCKAGEMVNAF----------SLHNEMVQMGMTPNIVTYGALIDGLCKHGELD 485

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL 143
           +A  +++ ++       N    +++   + K+    +   L+ ++  +     ++ +  +
Sbjct: 486 TANELLDEMRKK-GLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTV 544

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
           +  Y   GD++       E   R    +  ++N++M+ +   G   +       ++++G 
Sbjct: 545 IDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGI 604

Query: 204 IPNSRTY-TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
           +P++ TY T+M +H +    +++  +++  +    +   S  Y IL++G        EA 
Sbjct: 605 VPDAITYNTLMKQHCIR-NSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAW 663

Query: 263 SLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREM 302
            L  EM + G  P      AL +R  +   I  A E   EM
Sbjct: 664 FLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEM 704


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 102/455 (22%), Positives = 186/455 (40%), Gaps = 44/455 (9%)

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
           RQ     S E+ N V+S         EA+E F+++  +    N  +Y ++++ L + G++
Sbjct: 224 RQYGISPSPEACNAVLSRLPLD----EAIELFQELPHK----NVCSYNILLKALCDAGRV 275

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
             A ++F     M        Y IL+ G   +   + A  LL+EM   G  P   +  ++
Sbjct: 276 KDARQLFDE---MASAPDVVTYGILIHGHCALGELENAVKLLDEMVAGGVEPNATVYTSV 332

Query: 284 -ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDEND--------DNNSGVRI 334
              + + G+I  A   + +M+  K I +   Y        ++ D        D      +
Sbjct: 333 VALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGL 392

Query: 335 AY-GVQLKPWLDPKALANTLDEWSPEVVSLLA---DAKFVWTTRLVCKVLRHFKSPETAW 390
           A  GV     ++    A  L+E    +  + A   D   V  T L+    +  K  E   
Sbjct: 393 ATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQ 452

Query: 391 HFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF 450
                V  Q G T +V     +   L + G V+  + L+ ++ + G+ L   T   +I+ 
Sbjct: 453 MHNAMV--QRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLING 510

Query: 451 YGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD-AINVLEEMIFS 509
              +   + A++   D  T C     +     Y++L+  L K   D D A ++L+EM+  
Sbjct: 511 LCKAGYLEQAMRTMADMDTACLKPDVYT----YTTLIDALCK-SGDLDRAHSLLQEMLDK 565

Query: 510 GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC-------- 561
           GI P + T++ LM  F + G  +  +KL   + +  + P+A  +  L++ YC        
Sbjct: 566 GIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKST 625

Query: 562 ----KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
               K + + ++ P+  T  +L K   K    KEA
Sbjct: 626 TEIYKGMRSRDVGPNENTYNILIKGHCKARNMKEA 660



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 65/178 (36%), Gaps = 1/178 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+  Y   G +       N   QR    +  +Y  +     K G    A E   +
Sbjct: 432 VTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHE 491

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + ++G   N+ TY  +I  L   G L+ A+   + +    +K     Y  L++       
Sbjct: 492 MSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGD 551

Query: 258 FDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
            D A SLL EM D G  P      V +      G ++G  + L  ML      N   Y
Sbjct: 552 LDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATY 609



 Score = 45.4 bits (106), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 34/179 (18%), Positives = 71/179 (39%)

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
           SN     N  T ++L   L K+    +    + D+ ++        +  L+     SGDL
Sbjct: 493 SNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDL 552

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           +   S   E   +    +  +YN++M+ +  +G+     +    ++++   PN+ TY  +
Sbjct: 553 DRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSL 612

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           ++       + S  E++  +    +      Y IL++G        EA    +EM   G
Sbjct: 613 MKQYCIENNMKSTTEIYKGMRSRDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKG 671


>gi|222623943|gb|EEE58075.1| hypothetical protein OsJ_08937 [Oryza sativa Japonica Group]
          Length = 933

 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 122/570 (21%), Positives = 220/570 (38%), Gaps = 58/570 (10%)

Query: 69  PFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDI 128
           PFIV +        + A  + E +  N     +  TL AL   L +  R  E   L  ++
Sbjct: 244 PFIVYYC--RTKGVEEAFDLYEGMVRN-GVLLDVVTLSALVAGLCRDGRFSEAYALFREM 300

Query: 129 SSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN 188
                    V +  L+   + +G  + +LS   E   R  ++   +Y  +M    K GK 
Sbjct: 301 DKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKT 360

Query: 189 FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
            E  +T R  + +   PN  TYTV+I+ L     +D A +V   +    I      +  +
Sbjct: 361 DEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSV 420

Query: 249 VEGFVGVERFDEAKSLLNEMRD--------------DGKFPGRAMRVALERMQEMGFIQG 294
           + GFV     D+A      M++              DG F  +    ALE   +M   +G
Sbjct: 421 INGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDM-LCEG 479

Query: 295 ANEFLREMLPDKRIKNVRYYEDGSDDDEDE--NDDNNSGVRIAYGVQLKPWLDPKALAN- 351
               + + + D  +  +R  ++G  ++      D + SG+ + + V     +D    A  
Sbjct: 480 VK--VNKFIVDSLVNGLR--QNGKIEEAMALFKDASGSGLSLDH-VNYTTLIDGLFKAGD 534

Query: 352 --TLDEWSPEVV--SLLADAKFVWTTRLVC-KVLRHFKSPETAWHFFCWVAYQPGYTHDV 406
             T  ++  E++  ++L DA  V+   + C  +L  FK  ++    F       G   D 
Sbjct: 535 MPTAFKFGQELMDRNMLPDA-VVYNVFINCLCMLGKFKEAKS----FLTEMRNMGLKPDQ 589

Query: 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR-LIIDFYGISKKADAALKAFH 465
                M+    R G      +L+ +++   ++    T   L+   +G      A  K   
Sbjct: 590 STYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKA--KYLL 647

Query: 466 DDRTLCG--PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
           ++    G  P S     L +  +L+  ++ +R    +++ E M+ +G+  D+  ++ L+ 
Sbjct: 648 NEMVSAGFSPSS-----LTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQ 702

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--YLSNS----------NLMP 571
                G  +    +   +  +G+ PD   F  LI  +CK  +L N+          N+ P
Sbjct: 703 VLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISP 762

Query: 572 DAATKELLKKSLWKEGRRKEAAAVEERCEK 601
           + AT   L   L   GR  EA  V    EK
Sbjct: 763 NIATFNTLLGGLESVGRIGEAGTVLIEMEK 792



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 88/220 (40%), Gaps = 6/220 (2%)

Query: 61  LLNDRLLDPFIVTHA-----LRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKS 115
           ++ +R ++P +VT+             D+AL +   +        N+  + +L   L ++
Sbjct: 439 MMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCE-GVKVNKFIVDSLVNGLRQN 497

Query: 116 QRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
            +  E   L  D S S      VN+  L+     +GD+        E   R  L     Y
Sbjct: 498 GKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVY 557

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           N+ ++     GK  EA     ++ + G  P+  TY  MI      G+   AL++   + +
Sbjct: 558 NVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKM 617

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             IK     Y  LV G  G    ++AK LLNEM   G  P
Sbjct: 618 SSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSP 657



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 50/105 (47%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y+I+ + + K     EA+  + +++ +G +P   TY  +I      G +  A E+F  +
Sbjct: 801 TYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDM 860

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA 278
               +  TS  Y ILV G+  +    E K  L +M++ G  P + 
Sbjct: 861 QKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPSKG 905



 Score = 43.1 bits (100), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 12/121 (9%)

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A++V + M   G+  DV  ++ L+  F   G     + +  M+++ GV+P+   +   I 
Sbjct: 188 ALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIV 247

Query: 559 AYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
            YC+             +  + ++ D  T   L   L ++GR  EA A+    +K+   P
Sbjct: 248 YYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAP 307

Query: 607 S 607
           +
Sbjct: 308 N 308


>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Vitis vinifera]
          Length = 513

 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 133/302 (44%), Gaps = 30/302 (9%)

Query: 31  NKLALYLRRAQLIDSIRLAVRSNSS-NSLSSLLNDRL--------------------LDP 69
           +KL+L+ R  ++ D+IR  VR   S  ++S+ LN  +                    L+P
Sbjct: 139 SKLSLHERVVEMFDAIRPIVREKPSLKAISTCLNLLVESNQVDLTRKFLLNSKKSLNLEP 198

Query: 70  ------FIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT 123
                  +V H  ++  + DSA  ++E +K +     N  T   L   L  S R  E   
Sbjct: 199 NTCIFNILVKHHCKNG-DIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIE 257

Query: 124 LIGD-ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVY 182
           L  + +S  + L  ++ +  L+  +     ++  L      ++     +  +Y+ +M+ +
Sbjct: 258 LFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMNGF 317

Query: 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
            K G+  EA E F ++   G  P++  YT +I      G++D A+E+   +   + +  +
Sbjct: 318 CKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMRENKCRADT 377

Query: 243 KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA-MRVALERMQEMGFIQGANEFLRE 301
             + +++ G     RF+EA+ +L  +  +G +  +A  R+ L  +   G +Q A + +  
Sbjct: 378 VTFNVILGGLCREGRFEEARGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVGL 437

Query: 302 ML 303
           ML
Sbjct: 438 ML 439



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 12/130 (9%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           L Y++L+      ++   A+ ++E M  +G  P+V  +S LM  F  +G  +  +++F  
Sbjct: 273 LTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDE 332

Query: 541 VRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGR 588
           ++  G++PD   +  LI  +C            K +  +    D  T  ++   L +EGR
Sbjct: 333 MKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMRENKCRADTVTFNVILGGLCREGR 392

Query: 589 RKEAAAVEER 598
            +EA  + ER
Sbjct: 393 FEEARGMLER 402



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 93/232 (40%), Gaps = 43/232 (18%)

Query: 85  ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
           AL I   +     FSHN +T   +   LAKS++   +  ++  ++          F+NLM
Sbjct: 76  ALEIFNRVAEQRGFSHNNATYATILHKLAKSKKFQAIDAVLHQMTYETCKFHEGIFLNLM 135

Query: 145 QWYSTSGDLELVLSTWNEYR---------------------------QRAKLLSTES--- 174
           + +S     E V+  ++  R                            R  LL+++    
Sbjct: 136 KHFSKLSLHERVVEMFDAIRPIVREKPSLKAISTCLNLLVESNQVDLTRKFLLNSKKSLN 195

Query: 175 -------YNIVMSVYAKTG---KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
                  +NI++  + K G     FE VE  ++     + PN  TY+ +I  L   G+L 
Sbjct: 196 LEPNTCIFNILVKHHCKNGDIDSAFEVVEEMKK--SHVSYPNLITYSTLINGLCGSGRLK 253

Query: 225 SALEVFSALPLM-RIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            A+E+F  +    +I   +  Y  L+ GF   E+ D A  ++  M+ +G  P
Sbjct: 254 EAIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNP 305


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 65/135 (48%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + +  LM  Y   GD E     ++  R      S  + NI+++   K G+  E+ +  ++
Sbjct: 504 ITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKK 563

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++ EG IP   TY  +I+  V  G ++SAL V++ +  + +      Y  L+ GF     
Sbjct: 564 LVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNN 623

Query: 258 FDEAKSLLNEMRDDG 272
            D A  +++EM++ G
Sbjct: 624 MDLALKVMDEMKNKG 638



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/386 (22%), Positives = 152/386 (39%), Gaps = 35/386 (9%)

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           +M  Y K G    A+E F ++ + G  PN+ TY V+IE     G +D A E+++ +    
Sbjct: 335 LMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKD 394

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANE 297
           I  T      L+ G++     +EA  L +E    G          L  + + G +  A  
Sbjct: 395 ISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGIANVFTYNSLLSWLCKEGKMSEACS 454

Query: 298 FLREMLPDKRIKNVRYYEDGSDDDEDEND-DNNSGVRIAYGVQLKPWLDPKALANTLDEW 356
              +M+      +V  Y +       + D D+ +GV +     L+  L P  +       
Sbjct: 455 IWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVE---MLEKGLKPNLIT------ 505

Query: 357 SPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQ-PGYTHDVYALEKMLTI 415
                S+L D               +FK  +T + F  +   +        +    ++  
Sbjct: 506 ----YSVLMDG--------------YFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIING 547

Query: 416 LARHGHV-ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI 474
           L + G   E  DRL  KL  +G      T   IID +      ++AL  + +   +C  I
Sbjct: 548 LCKAGRTSESQDRL-KKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTE---MC-KI 602

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
                +  Y++L+    K      A+ V++EM   GI  DV  +  L+  F  +GD    
Sbjct: 603 GVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNA 662

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAY 560
            +L S +++ G+ P+  ++  +I  +
Sbjct: 663 SQLLSELQEVGLSPNKVVYSSMISGF 688



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 86/430 (20%), Positives = 168/430 (39%), Gaps = 48/430 (11%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN ++S   K GK  EA   + +++ +G  P+  +Y  MI      G +DSA  VF  +
Sbjct: 435 TYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEM 494

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
               +K     Y +L++G+      + A  L + MR +   P      + +  + + G  
Sbjct: 495 LEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRT 554

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
             + + L++++ +  I     Y    D    E   N++     Y    K  + P     T
Sbjct: 555 SESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSA--LAVYTEMCKIGVSPNVFTYT 612

Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
                    +L+          L  KV+   K+               G   DV     +
Sbjct: 613 ---------NLINGFCKSNNMDLALKVMDEMKNK--------------GIELDVTVYCAL 649

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL---KAFHDDRT 469
           +    R G +    +L+++L+  G+         +I  +   +  +AAL   K   ++  
Sbjct: 650 IDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGI 709

Query: 470 LCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
            C        + +Y++L+  L K  +   A  +  EM+  GI+PD+ T+S L++    +G
Sbjct: 710 PCD-------LQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKG 762

Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKE 577
             +  QK+   + +  + P  +++  LI  + K             + +  L+PD  T +
Sbjct: 763 QLENAQKILEDMDRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDDTTYD 822

Query: 578 LLKKSLWKEG 587
           +L     K+G
Sbjct: 823 ILVNGKVKDG 832



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 102/470 (21%), Positives = 177/470 (37%), Gaps = 91/470 (19%)

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           NI +S   K     EA + + ++  +G   +  T +VMI   +  GKL+ A   F     
Sbjct: 193 NIFLSELVKNNMIREARDVYNKMASKGVKGDCATISVMIRASMREGKLEEAEGWFREAKN 252

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM--RVALERMQEMGFIQ 293
             ++  ++ Y I++E          A  LL EMRD G  P   +  RV    M++ G + 
Sbjct: 253 KGVELDARAYSIVIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQ-GKML 311

Query: 294 GANEFLREMLPDKRIKNV--------RYYEDGSDDDEDENDD--NNSGV---RIAYGVQL 340
            A +   EML   +  NV         Y + G  D   E  D  N +G+    + Y V +
Sbjct: 312 EAVKVKGEMLSCGKPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVII 371

Query: 341 KPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHF---KSPETAWHFF---- 393
           + W       N   + + E+ + + +     T   V  ++R +   +SPE A   F    
Sbjct: 372 E-W----CCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAV 426

Query: 394 -CWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYG 452
            C +A       +V+    +L+ L + G +     +  K+   G+R              
Sbjct: 427 ACGIA-------NVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVR-------------- 465

Query: 453 ISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR-DFDAIN-VLEEMIFSG 510
                                      ++ Y++++  L  C++ D D+ N V  EM+  G
Sbjct: 466 -------------------------PSVVSYNNMI--LGHCQQGDMDSANGVFVEMLEKG 498

Query: 511 IVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------- 563
           + P++ T+S LM  +  +GD +    L+  +R   + P  +   ++I   CK        
Sbjct: 499 LKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQ 558

Query: 564 -----LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
                L     +P   T   +     KEG    A AV     KI   P++
Sbjct: 559 DRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNV 608



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 94/479 (19%), Positives = 187/479 (39%), Gaps = 34/479 (7%)

Query: 62  LNDRLLDPFIVTHAL-----RSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQ 116
           +N+  + P  VT+A+         N D A  I   +K N + S     +++L     K++
Sbjct: 355 MNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMK-NKDISPTVFNVNSLIRGYLKAR 413

Query: 117 RNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYN 176
              E   L  +  +    NV   + +L+ W    G +    S W +  ++    S  SYN
Sbjct: 414 SPEEASKLFDEAVACGIANV-FTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYN 472

Query: 177 IVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM 236
            ++  + + G    A   F +++++G  PN  TY+V+++     G  + A  ++  +   
Sbjct: 473 NMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGE 532

Query: 237 RIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGA 295
            I  +     I++ G     R  E++  L ++  +G  P        ++   + G +  A
Sbjct: 533 NIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSA 592

Query: 296 NEFLREMLPDKRIKNVRYYEDGSDDDEDENDDN----------NSGVRI---AYGVQLKP 342
                EM       NV  Y +  +     N+ +          N G+ +    Y   +  
Sbjct: 593 LAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDG 652

Query: 343 WLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGY 402
           +     + N     S      L+  K V+++ +     R  ++ E A H    +  + G 
Sbjct: 653 FCRKGDMVNASQLLSELQEVGLSPNKVVYSSMI--SGFRKLQNMEAALHLHKRMINE-GI 709

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA--DAA 460
             D+     +++ L + G +     L A++ + G+     T  ++I  +G+  K   + A
Sbjct: 710 PCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLI--HGLCNKGQLENA 767

Query: 461 LKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
            K   D DR    P      + +Y++L+    K     +A  +  EM+  G+VPD  T+
Sbjct: 768 QKILEDMDRKCMTPT-----VFIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDDTTY 821



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 96/511 (18%), Positives = 194/511 (37%), Gaps = 35/511 (6%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           IV  A+   P++ +AL ++  ++      H       +   + + +    +K     +S 
Sbjct: 264 IVIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSC 323

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
            K +NV V    LM+ Y   GDL+  L  +++  +     +  +Y +++    K G   +
Sbjct: 324 GKPMNVVV-ATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDK 382

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A E + Q+ ++   P       +I   +     + A ++F       I      Y  L+ 
Sbjct: 383 AYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGIANVF-TYNSLLS 441

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAM--RVALERMQEMGFIQGANEFLREMLPDKRI 308
                 +  EA S+  +M   G  P       + L   Q+ G +  AN    EML     
Sbjct: 442 WLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQ-GDMDSANGVFVEMLEKGLK 500

Query: 309 KNV--------RYYEDGSDDDEDENDDNNSGVRIAYG-VQLKPWLDPKALANTLDEWSPE 359
            N+         Y++ G  +      D   G  IA         ++    A    E S +
Sbjct: 501 PNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSE-SQD 559

Query: 360 VVSLLADAKFVWTTRLVCKVLRHF------KSPETAWHFFCWVAYQPGYTHDVYALEKML 413
            +  L    F+ T      ++  F       S    +   C +   P    +V+    ++
Sbjct: 560 RLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSP----NVFTYTNLI 615

Query: 414 TILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGP 473
               +  +++L  +++ ++++ G+ L  +    +ID  G  +K D       +   L   
Sbjct: 616 NGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALID--GFCRKGDMV-----NASQLLSE 668

Query: 474 ISKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
           + +  L    ++YSS++    K +    A+++ + MI  GI  D+Q ++ L+     +G 
Sbjct: 669 LQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGK 728

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
                +L++ +   G+ PD   + VLI   C
Sbjct: 729 LLFASELYAEMLAKGIMPDLITYSVLIHGLC 759



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 91/219 (41%), Gaps = 33/219 (15%)

Query: 369 FVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHV-----E 423
           F+  T+ +  +L H   P++A  +F W + + G    V AL  +L IL +          
Sbjct: 61  FLTQTQYIDTLLNHQNDPQSALSYFTWASQKRGLIKSVDALCVLLHILTKSTETCGKARN 120

Query: 424 LVDR------------LIAKLRSDGMRLPFSTIRLIIDF----YGISKKADAALKAFHD- 466
           L++R            ++A+L     RL F +   + ++    Y  +K+ + A+  F+  
Sbjct: 121 LLNRFASDDWGPVPSVVVARLIESSRRLDFESDSRVFNYLLNSYVKTKRINDAVDCFNSL 180

Query: 467 ---DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
              D   C        + + +  L  L K     +A +V  +M   G+  D  T S ++ 
Sbjct: 181 IEKDIVPC--------LTVMNIFLSELVKNNMIREARDVYNKMASKGVKGDCATISVMIR 232

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
               +G  +  +  F   +  GVE DA  + ++I+A CK
Sbjct: 233 ASMREGKLEEAEGWFREAKNKGVELDARAYSIVIEAVCK 271


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 99/494 (20%), Positives = 191/494 (38%), Gaps = 57/494 (11%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V + NL+      G+L+       +  +     +  +Y+++++   K  K  EA    ++
Sbjct: 349 VTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKE 408

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
            +++G  PN   Y  +I+    +G L  AL +   +    I   S     +++GF  + +
Sbjct: 409 TLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQ 468

Query: 258 FDEAKSLLNEMRDDG--KFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
            ++A+ +L EM   G    PG A    +  +      + A  FLREML    ++N+R  +
Sbjct: 469 MEQAECILEEMLSRGFSINPG-AFTTIIHWLCMNSRFESALRFLREML----LRNMRPND 523

Query: 316 D------GSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF 369
                  G    E ++ D          V+L   L  K     L   +  +  L      
Sbjct: 524 GLLTTLVGGLCKEGKHSD---------AVELWFRLLEKGFGANLVTTNALIHGLCKTGNM 574

Query: 370 VWTTRLVCKVL-RHFKSPETAWHFFCWVAYQPGYTH----------------DVYALEKM 412
               RL+ K+L R F   +  ++       + G                   D +    +
Sbjct: 575 QEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLL 634

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
           +  + R G ++    L  + +S  +     T  ++ID Y  + K +   K F +  T   
Sbjct: 635 IHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLT--- 691

Query: 473 PISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
                +L  ++Y++L+R   +     +A  + ++M   GI P   T+S L++     G  
Sbjct: 692 --QNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRM 749

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELL 579
           +  + L   +R+ G+ P+   +  LI  YCK             +S+ ++ P+  T  ++
Sbjct: 750 EDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVM 809

Query: 580 KKSLWKEGRRKEAA 593
                K G  K AA
Sbjct: 810 IDGYSKSGDMKTAA 823



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 89/212 (41%), Gaps = 1/212 (0%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + H L    N   A+ +++ +     F  ++ T + L +   K  +  E   L G++   
Sbjct: 564 LIHGLCKTGNMQEAVRLLKKMLER-GFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQ 622

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
                +  +  L+      G L+  ++ WNE + R  + +  +Y +++  Y K  K  E 
Sbjct: 623 GIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEG 682

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
            + F +++ +    NS  Y  +I      G    A ++   +    I  T+  Y  L+ G
Sbjct: 683 EKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHG 742

Query: 252 FVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
              + R ++AK L++EMR +G  P      AL
Sbjct: 743 MCNIGRMEDAKCLIDEMRKEGLLPNVVCYTAL 774



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 108/555 (19%), Positives = 201/555 (36%), Gaps = 60/555 (10%)

Query: 67  LDPFIVT-----HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHEL 121
           + P +VT     H L    N D A    E +  +   +    T   L   L K ++ +E 
Sbjct: 344 VSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKD-GVNATLITYSVLINGLMKLEKFNEA 402

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
            +++ +     F    V +  L+  Y   G+L   L    +   +    ++ + N ++  
Sbjct: 403 NSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQG 462

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
           + K G+  +A     +++  G   N   +T +I  L    + +SAL     + L  ++  
Sbjct: 463 FCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPN 522

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLR 300
                 LV G     +  +A  L   + + G         AL   + + G +Q A   L+
Sbjct: 523 DGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLK 582

Query: 301 EMLP-----DKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDE 355
           +ML      DK   N        +   +E      G ++  G  +K  ++P      L  
Sbjct: 583 KMLERGFVLDKITYNTLISGCCKEGKVEE------GFKLR-GEMVKQGIEPDTFTYNLLI 635

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
                +  L +A  +W     CK                          +VY    M+  
Sbjct: 636 HGMCRIGKLDEAVNLWNE---CK--------------------SRDLVPNVYTYGVMIDG 672

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
             +   +E  ++L  +L +  + L       +I  Y  +     A K   D R+   P +
Sbjct: 673 YCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPT 732

Query: 476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD-EKIV 534
                  YSSL+  +    R  DA  +++EM   G++P+V  ++ L+  +   G  +K+V
Sbjct: 733 TAT----YSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVV 788

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKS 582
             L  M   + + P+   + V+I  Y K             +    ++PD  T  +L   
Sbjct: 789 NVLQEMSSYD-IHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNG 847

Query: 583 LWKEGRRKEAAAVEE 597
             KEG+ +E   + E
Sbjct: 848 FCKEGKIEEGKLLAE 862



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 49/101 (48%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           ++  ++ + K GK  +A++ F  +   G  PN  TY  +I  L   G LD A      + 
Sbjct: 316 FSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMV 375

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              +  T   Y +L+ G + +E+F+EA S+L E  + G  P
Sbjct: 376 KDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTP 416



 Score = 39.3 bits (90), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 88/207 (42%), Gaps = 11/207 (5%)

Query: 360 VVSLLADAKFVWTTRLVCKVLRH--FKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILA 417
           V   LA+ K V+ T   C  L     K+ E    ++ +   + G + DVY     +    
Sbjct: 266 VFRFLAN-KGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQGVSPDVYLFSTAINAFC 324

Query: 418 RHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA--DAALKAFHDDRTLCGPIS 475
           + G VE   +L   +   G+     T   +I  +G+ K    D A + F +     G  +
Sbjct: 325 KGGKVEDAIQLFFDMEKLGVSPNVVTYNNLI--HGLCKHGNLDEAFR-FKEKMVKDGVNA 381

Query: 476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ 535
               ++ YS L+  L K ++  +A +VL+E +  G  P+   ++ L+  +   G+     
Sbjct: 382 T---LITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDAL 438

Query: 536 KLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           ++   +   G+ P++     +IQ +CK
Sbjct: 439 RIRGDMVSKGINPNSVTLNSIIQGFCK 465


>gi|357512639|ref|XP_003626608.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240852|gb|ABD32710.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355501623|gb|AES82826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 451

 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 81/162 (50%), Gaps = 1/162 (0%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           LM+ +  +GD+ +  + +N+  +R  +   +SY I+M    +  +   AV+ F  ++++G
Sbjct: 188 LMRAFCLNGDISIAYTLFNKMFKRDVVPDIQSYRILMQALCRKSQVNGAVDLFEDMLNKG 247

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +P+S TYT ++  L    KL  A ++   + +         Y  ++ GF    R  +A 
Sbjct: 248 FVPDSFTYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVILGFCREGRAHDAC 307

Query: 263 SLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREML 303
            ++++M+ +G  P   + R  +  +  +G +  A +++ EML
Sbjct: 308 KVIDDMQANGCLPNLVSYRTLVNGLCHLGMLDEATKYVEEML 349



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 24/224 (10%)

Query: 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI- 444
           P  A   F + + QP + H+      ++    R  H  L+D L+ +L+S+  +    T+ 
Sbjct: 55  PLLAKEIFDYASLQPNFRHNYSTYLILILKFGRSKHFSLLDDLLRRLKSESSQPITPTLF 114

Query: 445 RLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLT--KCKRDF--DAI 500
             +I  YG +   D AL  F+        + +F +  L   L R L      R++   A 
Sbjct: 115 SYLIKIYGEANLPDKALNTFY-------IMLQFNIKPLTKHLNRILDILVSHRNYLRPAF 167

Query: 501 NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
           ++ ++    G+ PD ++++ LM  F L GD  I   LF+ + +  V PD   +++L+QA 
Sbjct: 168 DLFKDAHKHGVFPDTKSYNILMRAFCLNGDISIAYTLFNKMFKRDVVPDIQSYRILMQAL 227

Query: 561 CKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           C+             + N   +PD+ T   L  SL ++ + +EA
Sbjct: 228 CRKSQVNGAVDLFEDMLNKGFVPDSFTYTTLLNSLCRKKKLREA 271



 Score = 43.1 bits (100), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YN V+  + + G+  +A +    +   G +PN  +Y  ++  L +LG LD A +      
Sbjct: 290 YNTVILGFCREGRAHDACKVIDDMQANGCLPNLVSYRTLVNGLCHLGMLDEATKYVEE-- 347

Query: 235 LMRIKRTSKQYLI---LVEGFVGVERFDEAKSLLNE 267
            M  K  S  + +   LV+GF  V R +EA  +L +
Sbjct: 348 -MLSKGFSPHFAVIHALVKGFCNVGRIEEACGVLTK 382



 Score = 42.0 bits (97), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 12/125 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++LL +L + K+  +A  +L  M   G  PD+  ++ ++  F  +G      K+   ++
Sbjct: 255 YTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVILGFCREGRAHDACKVIDDMQ 314

Query: 543 QNGVEPDAYMFKVLIQAYC---------KYLS---NSNLMPDAATKELLKKSLWKEGRRK 590
            NG  P+   ++ L+   C         KY+    +    P  A    L K     GR +
Sbjct: 315 ANGCLPNLVSYRTLVNGLCHLGMLDEATKYVEEMLSKGFSPHFAVIHALVKGFCNVGRIE 374

Query: 591 EAAAV 595
           EA  V
Sbjct: 375 EACGV 379


>gi|242042129|ref|XP_002468459.1| hypothetical protein SORBIDRAFT_01g046280 [Sorghum bicolor]
 gi|241922313|gb|EER95457.1| hypothetical protein SORBIDRAFT_01g046280 [Sorghum bicolor]
          Length = 790

 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 95/459 (20%), Positives = 191/459 (41%), Gaps = 55/459 (11%)

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           +LVL  W+E           +Y  +++V  + G+   A+     +   G +P+  T  ++
Sbjct: 155 DLVLRLWHEMHSFGVAPDNSTYGTLINVCCQGGRESVALLWLGDMCKRGLMPDEVTMNIV 214

Query: 214 IEHLVNLGKLDSA---LEVFSALPLMRIKRTSK----QYLILVEGFVGVERFDEAKSLLN 266
           ++     G+ ++A    E +S+  + R++ +S      Y  L++ +      ++     N
Sbjct: 215 MQAHKKAGEYETAGLFFERWSSDSIRRMEGSSHYSLYTYNTLIDTYGKAGHLEKVSDTFN 274

Query: 267 EMRDDGKFPGRAMRVAL-------ERMQEMG-FIQGANEFLREMLPDKRIKNV--RYYED 316
           +M  +G  P      ++        RM+++   ++   EF  +  PD R  N+    Y +
Sbjct: 275 QMLREGVAPSVVTFNSMIHVWGKHHRMEQVASLVRMMEEF--QCFPDTRTYNILIALYRE 332

Query: 317 GSDDD-----------EDENDDNNSGVRIAYGVQLKPWL-DPKALANTLDEWSPEVVSLL 364
            +D D           E+   D  S   + YG  ++  +   +AL   +DE        +
Sbjct: 333 SNDIDIAEYYYCKMKGENLVPDVVSCRTLLYGYSIRGMVTKAEALLKEMDE-----RGFV 387

Query: 365 ADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYA--LEKMLTILARHGHV 422
            D    +T   + ++  +    E AW +F        + H + +      +      G++
Sbjct: 388 VDE---YTQSALTRMYVNVGMLEQAWRWF------DRFHHHMNSECFSANIDAFGEKGYI 438

Query: 423 ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLL 482
            L ++         M L  S   ++I  YG+ +K D A +   D     G +  +   + 
Sbjct: 439 VLAEKAFIYCIKKKM-LSVSACNVMIKAYGLVEKLDEACE-IADGMERYGILPDY---VT 493

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+SL++ L+  K    AI  LE+M    ++ D   +S ++  FA  GD ++ + LF  + 
Sbjct: 494 YASLIQLLSTAKLPKKAIYYLEKMKVVKLLSDCIPYSVVISSFAKIGDLRMAEYLFREMV 553

Query: 543 QNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKK 581
            +GV PD +++ +LI AY +     N+   +A   L+KK
Sbjct: 554 MSGVRPDVFVYSILIDAYAEV---GNVQQASAYFGLMKK 589



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 102/499 (20%), Positives = 187/499 (37%), Gaps = 99/499 (19%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE---LVL 157
           + ST   L  V  +  R       +GD+     +   V    +MQ +  +G+ E   L  
Sbjct: 172 DNSTYGTLINVCCQGGRESVALLWLGDMCKRGLMPDEVTMNIVMQAHKKAGEYETAGLFF 231

Query: 158 STWNEYRQR----AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
             W+    R    +   S  +YN ++  Y K G   +  +TF Q++ EG  P+  T+  M
Sbjct: 232 ERWSSDSIRRMEGSSHYSLYTYNTLIDTYGKAGHLEKVSDTFNQMLREGVAPSVVTFNSM 291

Query: 214 I------EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNE 267
           I        +  +  L   +E F   P       ++ Y IL+  +      D A+    +
Sbjct: 292 IHVWGKHHRMEQVASLVRMMEEFQCFP------DTRTYNILIALYRESNDIDIAEYYYCK 345

Query: 268 MRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDEND 326
           M+ +   P   + R  L      G +  A   L+EM  D+R   V        D+  ++ 
Sbjct: 346 MKGENLVPDVVSCRTLLYGYSIRGMVTKAEALLKEM--DERGFVV--------DEYTQSA 395

Query: 327 DNNSGVRIAYGVQLKPWLD-------PKALANTLDEWSPEVVSLLADAKFVWTTRLVCKV 379
                V +    Q   W D        +  +  +D +  +   +LA+  F++  +     
Sbjct: 396 LTRMYVNVGMLEQAWRWFDRFHHHMNSECFSANIDAFGEKGYIVLAEKAFIYCIK----- 450

Query: 380 LRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILA------RHGHVELVDRLIAKLR 433
                                         +KML++ A       +G VE +D   A   
Sbjct: 451 ------------------------------KKMLSVSACNVMIKAYGLVEKLDE--ACEI 478

Query: 434 SDGMR----LP----FSTIRLIIDFYGISKKADAALKAFHDDRTL--CGPISKFKLMLLY 483
           +DGM     LP    ++++  ++    + KKA   L+     + L  C P         Y
Sbjct: 479 ADGMERYGILPDYVTYASLIQLLSTAKLPKKAIYYLEKMKVVKLLSDCIP---------Y 529

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           S ++ +  K      A  +  EM+ SG+ PDV  +S L+  +A  G+ +     F ++++
Sbjct: 530 SVVISSFAKIGDLRMAEYLFREMVMSGVRPDVFVYSILIDAYAEVGNVQQASAYFGLMKK 589

Query: 544 NGVEPDAYMFKVLIQAYCK 562
           +G+  +  ++  LI+ Y K
Sbjct: 590 DGLCENVTIYNSLIKLYTK 608


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 93/498 (18%), Positives = 197/498 (39%), Gaps = 51/498 (10%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L K  R+ E   +   +++       V++  L+  Y++ G    ++  +N  +       
Sbjct: 380 LCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAAD 439

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
              +NI++  YAK G   +A+  F ++  +G  P+  TY+ +I     +G+L  A+E F+
Sbjct: 440 CRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFN 499

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGF 291
            +    I+  +  Y  +++GF       +AK L++EM + G          + R   + F
Sbjct: 500 QMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKG----------IPRPDIVFF 549

Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALAN 351
               N  +  +  D R+ +     D   D  +  D           +     +D   L  
Sbjct: 550 ----NSVINSLCKDGRVMDAHDIFDLVTDIGERPDV----------ITFTSLIDGYCLVG 595

Query: 352 TLDEW-----SPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQ-PGYTHD 405
            +D+      + EVV +  D    ++T L      +FK+         +   Q  G   +
Sbjct: 596 KMDKAFKILDAMEVVGVETDI-VTYSTLLD----GYFKNGRINDGLTLFREMQRKGVKPN 650

Query: 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465
                 ML  L R G      +   ++   G  +  S   +I+     +  AD A+  F 
Sbjct: 651 TVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQ 710

Query: 466 DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF 525
              T+     KF + +L ++++  + K +R  +A  +   +  SG++P+  T+  ++ + 
Sbjct: 711 KLGTM---NVKFSITIL-NTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINL 766

Query: 526 ALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA------------YCKYLSNSNLMPDA 573
              G  +    +FS + ++G+ P + +   +I+             Y   +    ++ +A
Sbjct: 767 LKDGAVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKAGNYLSKVDGKRILLEA 826

Query: 574 ATKELLKKSLWKEGRRKE 591
           +T  L+     ++G+  E
Sbjct: 827 STTSLMLSLFSRKGKYHE 844



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 87/436 (19%), Positives = 166/436 (38%), Gaps = 57/436 (13%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN V+  + K G+  +A   F ++  +G  P+  TY ++I+ L     +D A  V   +
Sbjct: 267 AYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQM 326

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
                +  +  Y  ++ G+  + R  EA  +  +M+  G  P                I 
Sbjct: 327 TTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPN---------------IV 371

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWL-DPKALANT 352
             N FL  +    R K      D S   +    D  S   + +G   + W  D   L N+
Sbjct: 372 ICNSFLASLCKHGRSKEAAEIFD-SMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNS 430

Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSP----ETAWHFFCWVAYQPGYTHDVYA 408
           +         + AD +       V  +L H  +     + A   F  +  Q G + DV  
Sbjct: 431 MKSN-----GIAADCR-------VFNILIHAYAKRGMVDDAMLIFTEMQ-QQGVSPDVVT 477

Query: 409 LEKMLTILARHGHV----ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
              +++  +R G +    E  ++++A+       +  S I+      G+ K  +   +  
Sbjct: 478 YSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMI 537

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
           +        I +  + + ++S++ +L K  R  DA ++ + +   G  PDV TF+ L+  
Sbjct: 538 NKG------IPRPDI-VFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDG 590

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPD 572
           + L G      K+   +   GVE D   +  L+  Y K             +    + P+
Sbjct: 591 YCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPN 650

Query: 573 AATKELLKKSLWKEGR 588
             T  ++   L++ GR
Sbjct: 651 TVTYGIMLAGLFRAGR 666



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 117/275 (42%), Gaps = 27/275 (9%)

Query: 335 AYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVC-KVLRH--FKSPET--A 389
           +Y + LK   D     N++ + + ++  ++A      +  +V    + H  FK  ET  A
Sbjct: 230 SYSIILKGLCD-----NSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKA 284

Query: 390 WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID 449
              F  +  Q G   DV     ++  L +   ++  + ++ ++ ++G +    T   +I 
Sbjct: 285 CSLFHEMTRQ-GVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIH 343

Query: 450 FYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS 509
            Y    +   A K F   ++  G I     +++ +S L +L K  R  +A  + + M   
Sbjct: 344 GYATLGRLKEAAKMFRKMKSR-GLIPN---IVICNSFLASLCKHGRSKEAAEIFDSMTAK 399

Query: 510 GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------ 563
           G  PD+ ++  L++ +A +G    +  LF+ ++ NG+  D  +F +LI AY K       
Sbjct: 400 GHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDA 459

Query: 564 ------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                 +    + PD  T   +  +  + GR  +A
Sbjct: 460 MLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDA 494



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 62/142 (43%), Gaps = 14/142 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSG--IVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           YS +L+ L        A+++ + M   G    P+V  ++ +++ F  +G+      LF  
Sbjct: 231 YSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHE 290

Query: 541 VRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGR 588
           + + GV+PD   + ++I A CK             ++ +   PD  T   +       GR
Sbjct: 291 MTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGR 350

Query: 589 RKEAAAVEERCEKINDVPSLAL 610
            KEAA +  + +    +P++ +
Sbjct: 351 LKEAAKMFRKMKSRGLIPNIVI 372



 Score = 42.4 bits (98), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 13/124 (10%)

Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           DA+ +  EM   G+ PDV T+S ++  F+  G      + F+ +   G++P+  ++  +I
Sbjct: 458 DAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSII 517

Query: 558 QAYCKY------------LSNSNL-MPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND 604
           Q +C +            + N  +  PD      +  SL K+GR  +A  + +    I +
Sbjct: 518 QGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGE 577

Query: 605 VPSL 608
            P +
Sbjct: 578 RPDV 581



 Score = 42.4 bits (98), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 27/139 (19%), Positives = 61/139 (43%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           +V +  ++  Y+T G L+     + + + R  + +    N  ++   K G++ EA E F 
Sbjct: 335 TVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFD 394

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
            +  +G  P+  +Y  ++    + G     + +F+++    I    + + IL+  +    
Sbjct: 395 SMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRG 454

Query: 257 RFDEAKSLLNEMRDDGKFP 275
             D+A  +  EM+  G  P
Sbjct: 455 MVDDAMLIFTEMQQQGVSP 473


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 97/437 (22%), Positives = 171/437 (39%), Gaps = 55/437 (12%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDE-GAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           SYNI++ V    G+    VE  RQ+ DE  + P+  TY ++I     LG+L++A+++   
Sbjct: 264 SYNILLKVLCGAGR----VEDARQLFDEMASPPDVVTYGILIHGYCALGELENAVKLLDD 319

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGF 291
           +    ++  +  Y  +V       R  +A +++ +M         A+    L      G 
Sbjct: 320 MVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGD 379

Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALAN 351
           +  A  +  EM              G   D               GV     ++    A 
Sbjct: 380 LVSARRWFDEM-----------QRKGLATD---------------GVTYTTLINGLCRAG 413

Query: 352 TLDEWSPEVVSLLA---DAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYA 408
            L E    +  +LA   D   V  T LV    +  K  E        V  Q G   +V  
Sbjct: 414 ELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMV--QRGVAPNVVT 471

Query: 409 LEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-D 467
              +   L + G V+  + L+ ++ + G+ L   T   +I+    +   D A++   D D
Sbjct: 472 YTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMD 531

Query: 468 RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
                P      +  Y++L+  L K      A ++L+EM+ +GI P + T++ LM  F +
Sbjct: 532 AAGLKPD-----VYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCM 586

Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAAT 575
            G  +  +KL   + +  + P+A  +  L++ YC            K + + N+ P+  T
Sbjct: 587 SGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENT 646

Query: 576 KELLKKSLWKEGRRKEA 592
             +L K   K    KEA
Sbjct: 647 YNILIKGHCKARSMKEA 663



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 1/135 (0%)

Query: 169 LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALE 228
           +L    Y  V+S +   G    A   F ++  +G   +  TYT +I  L   G+L  A +
Sbjct: 361 ILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEK 420

Query: 229 VFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQ 287
           V   +   R+      Y +LV+G+    +  EA  + N M   G  P      AL + + 
Sbjct: 421 VLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLC 480

Query: 288 EMGFIQGANEFLREM 302
           + G +Q ANE L EM
Sbjct: 481 KQGDVQAANELLHEM 495



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 74/174 (42%), Gaps = 2/174 (1%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
            V +  L+     +G+L+       E   R   +   +Y +++  Y K GK  EA +   
Sbjct: 399 GVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHN 458

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
            ++  G  PN  TYT + + L   G + +A E+   +    ++  +  Y  L+ G     
Sbjct: 459 TMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAG 518

Query: 257 RFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIK 309
             D+A   + +M   G  P       L + + + G +  A++ L+EML D  IK
Sbjct: 519 YLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEML-DNGIK 571



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 60/138 (43%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L       GD++      +E   +   L+  +YN +++   K G   +A+ T   
Sbjct: 470 VTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMAD 529

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G  P+  TYT +I+ L   G+LD A ++   +    IK T   Y +L+ GF    R
Sbjct: 530 MDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGR 589

Query: 258 FDEAKSLLNEMRDDGKFP 275
            +  K LL  M +    P
Sbjct: 590 VEGGKKLLEWMLEKNIHP 607



 Score = 47.0 bits (110), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 33/179 (18%), Positives = 72/179 (40%)

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
           SN     N  T ++L   L K+    +    + D+ ++        +  L+     SG+L
Sbjct: 496 SNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGEL 555

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           +       E        +  +YN++M+ +  +G+     +    ++++   PN+ TY  +
Sbjct: 556 DRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSL 615

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           ++       + S  E++  +    ++     Y IL++G        EA+   NEM + G
Sbjct: 616 MKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKG 674



 Score = 42.4 bits (98), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 39/198 (19%), Positives = 80/198 (40%), Gaps = 4/198 (2%)

Query: 75  ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFL 134
           AL    NA   L  M A    PN     +   ++  +L    R  +  T++ D+   K +
Sbjct: 306 ALGELENAVKLLDDMVARGVEPN----ATVYTSVVALLCDKGRVSDALTVVEDMVHHKVI 361

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
                +  ++  +   GDL      ++E +++       +Y  +++   + G+  EA + 
Sbjct: 362 LDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKV 421

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
            ++++      +  TYTV+++     GK+  A +V + +    +      Y  L +G   
Sbjct: 422 LQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCK 481

Query: 255 VERFDEAKSLLNEMRDDG 272
                 A  LL+EM + G
Sbjct: 482 QGDVQAANELLHEMSNKG 499


>gi|449454008|ref|XP_004144748.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Cucumis sativus]
 gi|449490811|ref|XP_004158714.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Cucumis sativus]
          Length = 621

 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 95/251 (37%), Gaps = 65/251 (25%)

Query: 375 LVCKVLRHFKSP-ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI---- 429
           LV +VL  FK   + A+ FFCW A +PG+ HD      M+TIL +    E +  L+    
Sbjct: 177 LVLEVLARFKQARKPAFRFFCWAAQKPGFAHDSKTYNTMMTILGKTRQFETMVSLLEEMA 236

Query: 430 -------------------AKLRSDGM-----------RLPFSTIRLIIDFYGISKKADA 459
                              AK R   +           ++   TI  ++D  G +K    
Sbjct: 237 EKELLTMETFTVCFKAFAAAKERKKAVGVLELMKKYKYKVGVETINCLLDSLGRAKLGKE 296

Query: 460 ALKAFHDDRTLCGPISKFKLMLL------------------------------YSSLLRT 489
           AL  F        P  +   +LL                              ++++L  
Sbjct: 297 ALTIFEKLHGRFTPNLQTYTVLLNGWCRVRNLMEAGKIWNQMIDEDFKPDIVAHNTMLEG 356

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
           L +CK+  DAI + E M   G  PDV++++ L+  F  Q   K   + F  ++  G  PD
Sbjct: 357 LLRCKKRSDAIKLFEVMKAKGPSPDVKSYTILVRDFCKQAKMKEAVQYFEEMQGAGCRPD 416

Query: 550 AYMFKVLIQAY 560
           A ++  LI  +
Sbjct: 417 AAIYTCLITGF 427



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 35/222 (15%)

Query: 96  PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNV------------------S 137
           P F+H+  T + + T+L K+++   + +L+ +++  + L +                  +
Sbjct: 203 PGFAHDSKTYNTMMTILGKTRQFETMVSLLEEMAEKELLTMETFTVCFKAFAAAKERKKA 262

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKL----------------LSTESYNIVMSV 181
           V  + LM+ Y     +E +    +    RAKL                 + ++Y ++++ 
Sbjct: 263 VGVLELMKKYKYKVGVETINCLLDSL-GRAKLGKEALTIFEKLHGRFTPNLQTYTVLLNG 321

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
           + +     EA + + Q+IDE   P+   +  M+E L+   K   A+++F  +        
Sbjct: 322 WCRVRNLMEAGKIWNQMIDEDFKPDIVAHNTMLEGLLRCKKRSDAIKLFEVMKAKGPSPD 381

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
            K Y ILV  F    +  EA     EM+  G  P  A+   L
Sbjct: 382 VKSYTILVRDFCKQAKMKEAVQYFEEMQGAGCRPDAAIYTCL 423



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/205 (19%), Positives = 83/205 (40%), Gaps = 2/205 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           +   A  +A     A+ ++E +K    +     T++ L   L +++   E  T+   +  
Sbjct: 248 VCFKAFAAAKERKKAVGVLELMKKY-KYKVGVETINCLLDSLGRAKLGKEALTIFEKLHG 306

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
               N+    + L  W      +E     WN+           ++N ++    +  K  +
Sbjct: 307 RFTPNLQTYTVLLNGWCRVRNLME-AGKIWNQMIDEDFKPDIVAHNTMLEGLLRCKKRSD 365

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A++ F  +  +G  P+ ++YT+++       K+  A++ F  +     +  +  Y  L+ 
Sbjct: 366 AIKLFEVMKAKGPSPDVKSYTILVRDFCKQAKMKEAVQYFEEMQGAGCRPDAAIYTCLIT 425

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP 275
           GF   +R D    LL EM+ +G  P
Sbjct: 426 GFGNQKRMDTVYGLLKEMKANGCPP 450



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 5/94 (5%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+R   K  +  +A+   EEM  +G  PD   ++ L+  F  Q     V  L   ++
Sbjct: 385 YTILVRDFCKQAKMKEAVQYFEEMQGAGCRPDAAIYTCLITGFGNQKRMDTVYGLLKEMK 444

Query: 543 QNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATK 576
            NG  PD   +  LI+     L  +  MPD A +
Sbjct: 445 ANGCPPDGKTYNALIK-----LMTNKRMPDDAVR 473



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 38/215 (17%), Positives = 81/215 (37%), Gaps = 8/215 (3%)

Query: 64  DRLLDPFIVTHA------LRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR 117
           D    P IV H       LR    +D A+ + E +K+    S +  +   L     K  +
Sbjct: 340 DEDFKPDIVAHNTMLEGLLRCKKRSD-AIKLFEVMKAK-GPSPDVKSYTILVRDFCKQAK 397

Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI 177
             E      ++  +     +  +  L+  +     ++ V     E +        ++YN 
Sbjct: 398 MKEAVQYFEEMQGAGCRPDAAIYTCLITGFGNQKRMDTVYGLLKEMKANGCPPDGKTYNA 457

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           ++ +        +AV  ++++I+ G  P + TY++M++        +  +  +  + L  
Sbjct: 458 LIKLMTNKRMPDDAVRIYKKMIENGIKPTTHTYSMMMKSYFQTRNYEMGVAAWDEMKLKG 517

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
                  Y + + G + + R  EA   L EM + G
Sbjct: 518 CCPDDNSYTVFIGGLISLGRCAEAGKYLEEMIEKG 552



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 2/105 (1%)

Query: 171 STESYNIVMSVYAKTGKNFE-AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           +T +Y+++M  Y +T +N+E  V  + ++  +G  P+  +YTV I  L++LG+   A + 
Sbjct: 486 TTHTYSMMMKSYFQT-RNYEMGVAAWDEMKLKGCCPDDNSYTVFIGGLISLGRCAEAGKY 544

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
              +    +K     Y      F    R D  + L  +M+  GKF
Sbjct: 545 LEEMIEKGMKAPQLDYNKFAADFSRAGRPDILEELAQKMKFSGKF 589


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 1/167 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V + +L+   S SG +   L   ++   R    +  +YN ++    KT +  +A+    +
Sbjct: 401 VTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTK 460

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
             D+G  P+  TY+++I+ L   GKL+ A +VF  L +         Y I+++GF     
Sbjct: 461 FKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGL 520

Query: 258 FDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREML 303
           F+EA +LL++M D+G  P  +   + +  + +      A + LREM+
Sbjct: 521 FNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMI 567



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 50/83 (60%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +++Y++++ ++ K K   +A ++  EM+  GI PDV T+S L+  F + G  K    LF+
Sbjct: 225 VVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFN 284

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK 562
            +    ++PD Y F +L+ A+CK
Sbjct: 285 KMILENIKPDVYTFNILVNAFCK 307



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/207 (20%), Positives = 90/207 (43%), Gaps = 7/207 (3%)

Query: 72  VTHALRSAPNADSALSIMEALKSN---PNFSHNQSTLHALATVLAKSQRNHELKTLIGDI 128
           + H L       +AL +++ +  N   PN     + + ++  V    +  +E   L  ++
Sbjct: 196 LIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKV----KLVNEAFDLFSEM 251

Query: 129 SSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN 188
            S       V +  L+  +   G L+  +  +N+           ++NI+++ + K GK 
Sbjct: 252 VSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKM 311

Query: 189 FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
            E    F  ++ +G  PN  TY  +++    + +++ A  +F+ +    +    + Y I+
Sbjct: 312 KEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIM 371

Query: 249 VEGFVGVERFDEAKSLLNEMRDDGKFP 275
           + GF  +++FDEA +L  EM      P
Sbjct: 372 INGFCKIKKFDEAMNLFKEMHRKNIIP 398



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 88/205 (42%), Gaps = 16/205 (7%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           DVY    ++    + G ++    +   +   G++  F T   ++D Y + K+ + A   F
Sbjct: 294 DVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIF 353

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
           +      G ++    +  YS ++    K K+  +A+N+ +EM    I+PDV T+S L+  
Sbjct: 354 NTMAQ--GGVNP--DIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDG 409

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPD 572
            +  G      +L   +   GV P+   +  ++ A CK               +    PD
Sbjct: 410 LSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPD 469

Query: 573 AATKELLKKSLWKEGRRKEAAAVEE 597
            +T  +L K L + G+ ++A  V E
Sbjct: 470 ISTYSILIKGLCQSGKLEDARKVFE 494



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 12/139 (8%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS+L+       +  DAI++  +MI   I PDV TF+ L+  F   G  K  + +F M+ 
Sbjct: 263 YSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMM 322

Query: 543 QNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRK 590
           + G++P+   +  L+  YC              ++   + PD  +  ++     K  +  
Sbjct: 323 KQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFD 382

Query: 591 EAAAVEERCEKINDVPSLA 609
           EA  + +   + N +P + 
Sbjct: 383 EAMNLFKEMHRKNIIPDVV 401



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/201 (20%), Positives = 89/201 (44%), Gaps = 1/201 (0%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T + L     K  +  E KT+   +         V + +LM  Y    ++    S +N  
Sbjct: 297 TFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTM 356

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
            Q       +SY+I+++ + K  K  EA+  F+++  +  IP+  TY+ +I+ L   G++
Sbjct: 357 AQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRI 416

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVA 282
             AL++   +    +      Y  +++      + D+A +LL + +D G  P      + 
Sbjct: 417 SYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSIL 476

Query: 283 LERMQEMGFIQGANEFLREML 303
           ++ + + G ++ A +   ++L
Sbjct: 477 IKGLCQSGKLEDARKVFEDLL 497



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+S+L  L K  +   AI +L +    G  PD+ T+S L+      G  +  +K+F  + 
Sbjct: 438 YNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLL 497

Query: 543 QNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRK 590
             G   D Y + ++IQ +C              + ++  +PDA T E++  SL+K+    
Sbjct: 498 VKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDEND 557

Query: 591 EA 592
            A
Sbjct: 558 MA 559


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 94/463 (20%), Positives = 185/463 (39%), Gaps = 62/463 (13%)

Query: 174 SYNIVMSV------YAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSA 226
           SY +V++V       ++   N E +E   +V  E  I  N+ +Y ++I  L  LGK+  A
Sbjct: 218 SYGLVVTVDSCNAFLSRIANNSEGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEA 277

Query: 227 LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALER 285
             +   +           Y  +++G+  +    +A  L+++M+  G  P R      +  
Sbjct: 278 HRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILL 337

Query: 286 MQEMGFIQGANEFLREMLPDKRI-KNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWL 344
           + ++G    A + LREM+  K I  NV Y               +   ++ +      W 
Sbjct: 338 LCKIGKSFEAEKVLREMMSQKIIPDNVVY-----------TTLIHGFFKLGHVRTANKWF 386

Query: 345 D---PKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVL-RHFKSPETAW----HFFCWV 396
           D    K ++     ++  +       K +    L  +++ R  K  E  +      +C  
Sbjct: 387 DEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKA 446

Query: 397 A------------YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI 444
                         Q G T ++     ++  L +HG ++  + L+ ++R  G++L     
Sbjct: 447 GEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIY 506

Query: 445 RLIIDFYGISKKA--DAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAIN 501
             +++  GI K    + A+K   + +     P +     + Y++++    +      A  
Sbjct: 507 NSMVN--GICKAGNIEQAIKLMKEMEVAGIDPDA-----ITYTTVIDAYCRLGDIDKAHK 559

Query: 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           +L+EM+  G+ P V TF+ LM  F + G  +   +L   + + G+ PDA  +  L++ +C
Sbjct: 560 LLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHC 619

Query: 562 ------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                       K + N  + PD+ T  +L K   K    KEA
Sbjct: 620 IRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEA 662



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 69/138 (50%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V++  ++  Y   G+L+  L   ++ + +    +  +YN ++ +  K GK+FEA +  R+
Sbjct: 294 VSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLRE 353

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++ +  IP++  YT +I     LG + +A + F  +   +I      Y  L++GF    +
Sbjct: 354 MMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGK 413

Query: 258 FDEAKSLLNEMRDDGKFP 275
             E ++L +EM   G  P
Sbjct: 414 VIEPQNLFHEMISRGLKP 431



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 85/188 (45%), Gaps = 1/188 (0%)

Query: 85  ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
           AL +M+ ++       N+ T +++  +L K  ++ E + ++ ++ S K +  +V +  L+
Sbjct: 312 ALKLMDDMQIK-GLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLI 370

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204
             +   G +      ++E   +       +Y  ++  + + GK  E    F ++I  G  
Sbjct: 371 HGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLK 430

Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL 264
           P+  TYT +I+     G++ +A  + + +  M +      Y  L++G       D A  L
Sbjct: 431 PDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANEL 490

Query: 265 LNEMRDDG 272
           L+EMR  G
Sbjct: 491 LDEMRKKG 498



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 1/167 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + +  L+Q +   G +    + ++E   R       +Y  ++ VY K G+   A     +
Sbjct: 399 ITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNE 458

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++  G  PN  TY  +I+ L   G+LD+A E+   +    ++     Y  +V G      
Sbjct: 459 MVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGN 518

Query: 258 FDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREML 303
            ++A  L+ EM   G  P        ++    +G I  A++ L+EML
Sbjct: 519 IEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEML 565



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 93/238 (39%), Gaps = 20/238 (8%)

Query: 387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
           E A   FC    + G + +  +   ++  L R G V+   RL+ ++          +   
Sbjct: 243 EMAIKVFC----EYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYST 298

Query: 447 IIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
           +ID Y    +   ALK   D +      +++     Y+S++  L K  + F+A  VL EM
Sbjct: 299 VIDGYCHLGELKKALKLMDDMQIKGLKPNRYT----YNSIILLLCKIGKSFEAEKVLREM 354

Query: 507 IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY---CKY 563
           +   I+PD   ++ L++ F   G  +   K F  +    + PD   +  LIQ +    K 
Sbjct: 355 MSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKV 414

Query: 564 LSNSNLM---------PDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRG 612
           +   NL          PD  T   L     K G    A ++     ++   P++   G
Sbjct: 415 IEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYG 472



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 65/138 (47%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+      G+L+      +E R++   L+   YN +++   K G   +A++  ++
Sbjct: 469 VTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKE 528

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G  P++ TYT +I+    LG +D A ++   +    ++ T   + +L+ GF  +  
Sbjct: 529 MEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGM 588

Query: 258 FDEAKSLLNEMRDDGKFP 275
            ++   LL  M + G  P
Sbjct: 589 LEDGDRLLGWMLEKGIVP 606



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 41/253 (16%), Positives = 106/253 (41%), Gaps = 18/253 (7%)

Query: 29  FTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHA-----LRSAPNAD 83
           +T  + +Y +  +++++           SL + +    + P IVT+      L      D
Sbjct: 436 YTTLIDVYCKAGEMVNAF----------SLHNEMVQMGMTPNIVTYGALIDGLCKHGELD 485

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL 143
           +A  +++ ++       N    +++   + K+    +   L+ ++  +     ++ +  +
Sbjct: 486 TANELLDEMRKK-GLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTV 544

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
           +  Y   GD++       E   R    +  ++N++M+ +   G   +       ++++G 
Sbjct: 545 IDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGI 604

Query: 204 IPNSRTY-TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
           +P++ TY T+M +H +    +++  +++  +    +   S  Y IL++G        EA 
Sbjct: 605 VPDAITYNTLMKQHCIR-NSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAW 663

Query: 263 SLLNEMRDDGKFP 275
            L  EM + G  P
Sbjct: 664 FLYKEMIEKGYVP 676


>gi|242095042|ref|XP_002438011.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
 gi|241916234|gb|EER89378.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
          Length = 1443

 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 107/249 (42%), Gaps = 29/249 (11%)

Query: 370 VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
           +WT   +  V       E A   F  +  + G+  D      +L   A+ G+V+ V+   
Sbjct: 328 LWTYNAMVSVHGRCGKAEEAERLFGELV-EKGFMPDAVTYNSLLYAFAKEGNVDKVEHTC 386

Query: 430 AKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFKLMLLYSSLLR 488
            +L   G +    T   +I  YG   + D A+  + + R + C P +     + Y+ ++ 
Sbjct: 387 EELVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAVGCTPDA-----VTYTVMID 441

Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548
           +L K  +  +A  VLE+M  +G+ P +  FS L+  +A  G     +K F  +  +GV+P
Sbjct: 442 SLGKMDKIAEAGKVLEDMADAGLKPTLVAFSALICAYAKGGRRADAEKTFDCMIASGVKP 501

Query: 549 DAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVE 596
           D   + V++  +             + + N N  PD    ++L  +L K          E
Sbjct: 502 DRLAYLVMLDVFARSGETEKMLRLYRTMMNDNYRPDDDMYQVLLVALAK----------E 551

Query: 597 ERCEKINDV 605
           ++CE+I ++
Sbjct: 552 DKCEEIEEI 560



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 112/248 (45%), Gaps = 13/248 (5%)

Query: 67  LDPFIVTH-----ALRSAPNADSALSIME---ALKSNPNFSHNQSTLHALATVLAKSQRN 118
           L P ++T+     A   + N + A+++ E   A +  P+      T +A+ +V  +  + 
Sbjct: 289 LRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLW----TYNAMVSVHGRCGKA 344

Query: 119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV 178
            E + L G++    F+  +V + +L+  ++  G+++ V  T  E  +     +  +YN +
Sbjct: 345 EEAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEITYNTM 404

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI 238
           + +Y K G+   AV  + ++   G  P++ TYTVMI+ L  + K+  A +V   +    +
Sbjct: 405 IHMYGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMADAGL 464

Query: 239 KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANE 297
           K T   +  L+  +    R  +A+   + M   G  P R A  V L+     G  +    
Sbjct: 465 KPTLVAFSALICAYAKGGRRADAEKTFDCMIASGVKPDRLAYLVMLDVFARSGETEKMLR 524

Query: 298 FLREMLPD 305
             R M+ D
Sbjct: 525 LYRTMMND 532



 Score = 45.4 bits (106), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 72/159 (45%), Gaps = 4/159 (2%)

Query: 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465
           V ++  M+  L   G ++ +  ++ +L+    ++  ST+ L++D +  +      +K ++
Sbjct: 815 VDSVNGMMRALIVDGRLDELYVVVGELQDMDFKISKSTVLLMLDAFAKAGDVFEVMKIYN 874

Query: 466 DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF 525
             +           M LY S+   L    R  D   ++ EM  +G  PD+  F+ L+  +
Sbjct: 875 GMKA----AGYLPNMHLYRSMTSLLCHHNRFRDVELMIAEMEGAGFKPDLSIFNSLLNMY 930

Query: 526 ALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYL 564
              G+     +++  + + G+EPD   +  LI  YC+ L
Sbjct: 931 TAAGNFDRTTQVYQSILEAGLEPDEDTYNTLIVMYCRSL 969



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y++L+   ++     DA+ V EEMI S   PD+ T++ ++      G  +  ++LF 
Sbjct: 293 VITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFG 352

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK 562
            + + G  PDA  +  L+ A+ K
Sbjct: 353 ELVEKGFMPDAVTYNSLLYAFAK 375


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 98/482 (20%), Positives = 183/482 (37%), Gaps = 95/482 (19%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           +V +  ++     SG+ +     ++E   R       ++N ++ V  K G  FE+     
Sbjct: 181 AVAYCTVVAGLYDSGEHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLG 240

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           +V+  G  PN  T+ + ++ L   G LD A+            R S              
Sbjct: 241 KVLKRGVCPNLFTFNIFVQGLCREGALDRAV------------RNS-------------- 274

Query: 257 RFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREML-----PDKRIKN 310
           R  EA+  L +M + G  P        ++   + G +Q AN  L++ +     PD+    
Sbjct: 275 RVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDE---- 330

Query: 311 VRYYEDGSDDDEDENDDNNSGV-RIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF 369
             Y    +   +D + D    V +   G  L+P +    L NTL +   +   +L   + 
Sbjct: 331 FTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSI---VLYNTLIKGLSQQGLILPALQL 387

Query: 370 ------------VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILA 417
                       +WT  LV   L        A H     A   G   D++    ++    
Sbjct: 388 MNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLV-DDAIAKGCPPDIFTYNTLIDGYC 446

Query: 418 RHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISK 476
           +   ++    ++ ++ S GM     T   +++    + K++  ++ F   +   C P   
Sbjct: 447 KQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPN-- 504

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD------ 530
              ++ Y+ ++ +L K K+  +A+++L EM   G+ PDV +F  L   F   GD      
Sbjct: 505 ---IITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQ 561

Query: 531 -----EK-------------------------IVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
                EK                         +  KLFS+++ +G +PD Y ++V+I  +
Sbjct: 562 LFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGF 621

Query: 561 CK 562
           CK
Sbjct: 622 CK 623



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 109/525 (20%), Positives = 192/525 (36%), Gaps = 96/525 (18%)

Query: 129 SSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAK-LLSTESYNIVMSVYAKTGK 187
           S   F + +  +  ++Q     G+ E +    +E R+     L   +Y   M  Y + GK
Sbjct: 32  SEDGFKHTASTYKCIVQKLGHHGEFEEMEKLLSEMRENVNNALLEGAYIEAMKNYGRKGK 91

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
             EAV+TF ++      P+  ++  ++  LV  G  + A +V+  +    ++     Y I
Sbjct: 92  VQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVYTYTI 151

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKR 307
            ++ F    R                 P  A+R+ L  M E+G    A  +   +     
Sbjct: 152 RIKSFCKTAR-----------------PYAALRL-LRNMPELGCDSNAVAYCTVV----- 188

Query: 308 IKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADA 367
                 Y+ G  D   E  D            L   L P  +A        ++V +L   
Sbjct: 189 ---AGLYDSGEHDHARELFDE----------MLARCLCPDVVAFN------KLVHVLCKK 229

Query: 368 KFVWTT-RLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVD 426
             V+ + RL+ KVL+    P    + F +  +  G        E  L    R+  V   +
Sbjct: 230 GLVFESERLLGKVLKRGVCP----NLFTFNIFVQGLCR-----EGALDRAVRNSRVVEAE 280

Query: 427 RLIAKLRSDGMRLPFSTIRLIIDFY---GISKKA-----DAALKAFH-DDRTLCGPISKF 477
             + K+ + G      T   IID Y   G+ + A     DA  K F  D+ T C  I+ F
Sbjct: 281 EYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGF 340

Query: 478 ----------------------KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
                                   ++LY++L++ L++      A+ ++ EM  +G +P++
Sbjct: 341 CKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNI 400

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLS---------- 565
            T++ ++      G       L       G  PD + +  LI  YCK L           
Sbjct: 401 WTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNR 460

Query: 566 --NSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
             +  + PD  T   L   L K G+ +E   + +  E+    P++
Sbjct: 461 MWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNI 505



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 88/207 (42%), Gaps = 5/207 (2%)

Query: 65  RLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTL 124
           R L P  V   ++   +   AL +  + KS   F H  ST   +   L       E++ L
Sbjct: 3   RTLLPKHVAAVVKIQTDPLKALEMFNSAKSEDGFKHTASTYKCIVQKLGHHGEFEEMEKL 62

Query: 125 IGDISSSKFLNVSV---NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
           + ++  +  +N ++    ++  M+ Y   G ++  + T+          S  S+N +M++
Sbjct: 63  LSEMREN--VNNALLEGAYIEAMKNYGRKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNI 120

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
             + G + +A + + ++ D G   +  TYT+ I+      +  +AL +   +P +     
Sbjct: 121 LVEFGYHNQAHKVYMRMRDRGVQSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSN 180

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEM 268
           +  Y  +V G       D A+ L +EM
Sbjct: 181 AVAYCTVVAGLYDSGEHDHARELFDEM 207



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/188 (19%), Positives = 90/188 (47%), Gaps = 7/188 (3%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNP 96
           LID     ++ +S+  + + +  + + P ++T+      L  A  ++  + I +A++   
Sbjct: 441 LIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEK- 499

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
             + N  T + +   L K+++ +E   L+G++ S       V+F  L   +   GD++  
Sbjct: 500 GCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGA 559

Query: 157 LSTWNEYRQRAKLL-STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
              +    ++  +  +T +YNI++S +++      A++ F  + + G  P++ TY V+I+
Sbjct: 560 YQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVID 619

Query: 216 HLVNLGKL 223
               +G +
Sbjct: 620 GFCKMGNI 627



 Score = 42.0 bits (97), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 32/181 (17%), Positives = 70/181 (38%)

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
           N  F  +  T +++     K     +   ++ D     F      + +L+  +   GD +
Sbjct: 288 NGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPD 347

Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
             ++ + +   +    S   YN ++   ++ G    A++   ++ + G +PN  TY ++I
Sbjct: 348 RAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVI 407

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
             L  +G +  A  +               Y  L++G+    + D A  ++N M   G  
Sbjct: 408 NGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMT 467

Query: 275 P 275
           P
Sbjct: 468 P 468


>gi|326488077|dbj|BAJ89877.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 395

 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 1/205 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           ++  A+  +   +  L I E +  N  +     T + + + L KS+   E   L   + S
Sbjct: 109 LILDAMGKSMRIEDMLKIQEEMH-NKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMS 167

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
             F      +  L+      G++E   + ++E  +     +   YNI+++ Y   G   +
Sbjct: 168 EGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEK 227

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
             E F  ++++G  P+ ++YTV+I+ L   G+L+  L  F  L  M ++     Y +L+ 
Sbjct: 228 VCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIH 287

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP 275
           G     R +EA SL N+M   G  P
Sbjct: 288 GLGKSGRLEEALSLYNDMEKKGIAP 312



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 93/226 (41%), Gaps = 28/226 (12%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D +    +L  + +   +E + ++  ++ + G +  + T   II     SK  D A
Sbjct: 99  GCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEA 158

Query: 461 LKAFHD------DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
           +  ++         T C           Y  LL  L K     DA  + +EM+  G  P+
Sbjct: 159 INLYYQLMSEGFSPTPC----------TYGPLLDGLLKDGNIEDAEALFDEMLECGCEPN 208

Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------K 562
              ++ L+  + + GD + V +LF  + + G+ PD   + V+I   C            K
Sbjct: 209 CAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFK 268

Query: 563 YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
            L++  L PD  T  LL   L K GR +EA ++    EK    P+L
Sbjct: 269 QLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNL 314



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 49/106 (46%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+     SG LE  LS +N+  ++    +  +YN ++    K GK  EA + + +++ +G
Sbjct: 285 LIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKG 344

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
             PN  TY  +I      G  ++A   +  + +   +  S  Y+ L
Sbjct: 345 WKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPNSSTYMQL 390



 Score = 40.0 bits (92), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 38/233 (16%), Positives = 99/233 (42%), Gaps = 17/233 (7%)

Query: 44  DSIRLAVRSNSSNSL-SSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQ 102
           +++ +++++ S N+L   L+++ L+D             A+   S M+ L  +P+    +
Sbjct: 61  ENLGVSLKTGSYNALICGLVDEDLIDI------------AEELFSEMKRLGCDPD----E 104

Query: 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
            T H +   + KS R  ++  +  ++ +  + +  V +  ++     S  L+  ++ + +
Sbjct: 105 FTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQ 164

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
                   +  +Y  ++    K G   +A   F ++++ G  PN   Y +++      G 
Sbjct: 165 LMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGD 224

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            +   E+F ++    +    K Y ++++      R ++  S   ++ D G  P
Sbjct: 225 TEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEP 277


>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 712

 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 101/247 (40%), Gaps = 18/247 (7%)

Query: 79  APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV 138
           A N   A  +M+ L     F+ N  T +A+   L K  R  E   L+     S      V
Sbjct: 417 AGNFGRAYELMD-LMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKV 475

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
            +  L+  +    D +  L+ ++   +        +YN++++ + +  K  E+ + F + 
Sbjct: 476 TYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEA 535

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
           +  G +P   TYT MI      G + SA++ F  +     K  S  Y  L+ G     + 
Sbjct: 536 VGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNESKL 595

Query: 259 DEAKSLLNEMRDDGKFPGRAMRVA-----------------LERMQEMGFIQGANEFLRE 301
           DEA  L   M D+G  P    RV                  LER+++  +I+  N  +R+
Sbjct: 596 DEACQLYETMIDNGLSPCEVTRVTLAYEYCKQGDSATAMIILERLEKKLWIRTVNTLIRK 655

Query: 302 MLPDKRI 308
           +  +K++
Sbjct: 656 LCSEKKV 662



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 104/480 (21%), Positives = 190/480 (39%), Gaps = 60/480 (12%)

Query: 92  LKSNPN-FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS 150
           L+ NPN  +H Q     + TV+A       L    G + S  F N  + F     +    
Sbjct: 93  LEINPNSLTHEQ-----VITVVA------SLAQEAGSVVSLSFFNWVIGFSKFRHFMR-- 139

Query: 151 GDLELVLSTW---NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNS 207
             L +V +T    N+   RA    TE    ++  +++ GK  EAV    ++ + G +  +
Sbjct: 140 --LYIVCATTFLNNDNLDRA----TEVMQCMVRSFSEIGKLKEAVNMVIEMQNHGLVLKA 193

Query: 208 RTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNE 267
           R    +I+  + LG +D A +VF  +    +   S  Y ++V G+  + R  +    L +
Sbjct: 194 RILNFVIDVALALGFVDYAEKVFDEMLDRAVVPDSTSYKLMVVGYCRMGRISDVDRWLKD 253

Query: 268 MRDDGKFPGRA-MRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDEND 326
           M + G     A   + +    E GF+  A  + ++ +      N+  +          + 
Sbjct: 254 MIERGYAVDNATCTLMISTFSEKGFVNRAFWYFKKWVQMGLNPNLINF----------SS 303

Query: 327 DNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVS--LLAD--AKFVWTTRLVCKVLRH 382
             N   +I    Q    L+          W P V +   L D   K  WT          
Sbjct: 304 LINGLCKIGSIKQAFEMLEEMVRKG----WKPNVYTHTALIDGLCKKGWT---------- 349

Query: 383 FKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFS 442
               E A+  F  +     Y  +VY    M+    +   +   + L+ +++  G+    +
Sbjct: 350 ----EKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTN 405

Query: 443 TIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINV 502
           T   +ID +    KA    +A+ +   L G       +  Y++++  L K  R  +A  +
Sbjct: 406 TYTCLIDGHC---KAGNFGRAY-ELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKL 461

Query: 503 LEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           L   + SG+  D  T++ L+  F  Q D K    +FS + + G++PD + + VLI  +C+
Sbjct: 462 LRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCR 521



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 91/475 (19%), Positives = 176/475 (37%), Gaps = 63/475 (13%)

Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
           G ++     ++E   RA +  + SY +++  Y + G+  +     + +I+ G   ++ T 
Sbjct: 207 GFVDYAEKVFDEMLDRAVVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATC 266

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
           T+MI      G ++ A   F     M +      +  L+ G   +    +A  +L EM  
Sbjct: 267 TLMISTFSEKGFVNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVR 326

Query: 271 DGKFPGRAMRVAL-ERMQEMGFIQGANE-FLREMLPDKRIKNVRYYE---DGSDDDEDEN 325
            G  P      AL + + + G+ + A   FL+ +  D    NV  Y    +G   +E  N
Sbjct: 327 KGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLN 386

Query: 326 DDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKS 385
                 +R+      +  L P                         T    C +  H K+
Sbjct: 387 RAEMLLIRMK-----EQGLVPN------------------------TNTYTCLIDGHCKA 417

Query: 386 PE--TAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFST 443
                A+     +  + G+T +++    ++  L + G      +L+ +    G+     T
Sbjct: 418 GNFGRAYELMDLMG-KEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVT 476

Query: 444 IRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL-----MLLYSSLLRTLTKCKRDFD 498
             ++I  +        AL  F            FK+     M  Y+ L+ T  + K+  +
Sbjct: 477 YTILISEFCRQTDNKQALAIFS---------RMFKVGLQPDMHTYNVLIATFCRQKKVEE 527

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           +  + EE +  G++P  +T++ ++  +   G      K F  +R  G +PD+  +  LI 
Sbjct: 528 SEKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALIS 587

Query: 559 AYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEK 601
             C            + + ++ L P   T+  L     K+G    A  + ER EK
Sbjct: 588 GLCNESKLDEACQLYETMIDNGLSPCEVTRVTLAYEYCKQGDSATAMIILERLEK 642


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 109/523 (20%), Positives = 194/523 (37%), Gaps = 72/523 (13%)

Query: 119 HELKTL------IGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
           HE+K L       G +  S+ L   ++F  LM      G  ++V+S   +        + 
Sbjct: 57  HEIKGLDDAIDLFGYMVRSRPLPSVIDFCKLMGVVVRMGRPDVVISLHKKMEMLRMPCNA 116

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            S+ I+M  +    K   A+ TF ++   G  P   T+  ++  L    ++  AL++F  
Sbjct: 117 YSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQ 176

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGF 291
           +     K     +  L+ G     R  EA +LL+ M +DG  P +      ++ M +MG 
Sbjct: 177 M----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGD 232

Query: 292 IQGANEFLREMLPDKRI-KNVRYYE---DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPK 347
              A   LR+M     I  NV  Y    DG   D   +D +N  +           +  K
Sbjct: 233 TVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIE----------MQEK 282

Query: 348 ALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY 407
            +   +  ++  +       ++    +L+ ++L    +P                  DV 
Sbjct: 283 EIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINP------------------DVV 324

Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDD 467
               ++    + G     + L  ++    +     T   +ID +    + DAA   F+  
Sbjct: 325 TFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLT 384

Query: 468 RTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
            T  C P      ++ +++L+    + KR  D I +L EM  +G+V +  T++ L++ F 
Sbjct: 385 PTKGCSPD-----IITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFC 439

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNL----- 569
             GD    Q L   +  +GV P+      L+   C            K +  S +     
Sbjct: 440 QVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDAS 499

Query: 570 ------MPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
                  PD  T  +L   L  EG+  EA  + E       VP
Sbjct: 500 RPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVP 542



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 89/446 (19%), Positives = 178/446 (39%), Gaps = 31/446 (6%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL 143
           SAL+++  ++   +   N    + +   L K  R+ +   L  ++   +     V +  +
Sbjct: 235 SALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCM 294

Query: 144 MQWYSTSG---DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
           +  +  SG   D E +L    E +    +++   ++ +++ + K GK FEA E + +++ 
Sbjct: 295 INGFCISGRWSDAEQLLQEMLERKINPDVVT---FSALINAFVKEGKFFEAEELYDEMLP 351

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
              IP++ TY+ MI+      +LD+A  +F   P          +  L+ G+   +R D+
Sbjct: 352 RSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDD 411

Query: 261 AKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYE---D 316
              LL+EM + G          L     ++G +  A + L+EM+      NV       D
Sbjct: 412 GIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLD 471

Query: 317 GSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLV 376
           G  D+    D     + +   +Q K  +D  A +   +   P+V +            L+
Sbjct: 472 GLCDNGKLKD----ALEMFKAMQ-KSKMDIDA-SRPFNGVEPDVQTY---------NILI 516

Query: 377 CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
           C ++   K  E A   +  + ++ G   D      M+  L +   ++   ++   + S  
Sbjct: 517 CGLINEGKFLE-AEELYEEMPHR-GIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKS 574

Query: 437 MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
                 T   +I  Y  +   D  L+ F +     G        + Y +L+    K    
Sbjct: 575 FSPDVVTFNTLITGYCKAGMVDDGLELFCE----MGQRGIVADAITYITLIYGFRKVDNI 630

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLM 522
             A+++ +EMI SG+ PD  T   ++
Sbjct: 631 DGALDIFQEMISSGVYPDTITIRNML 656



 Score = 46.2 bits (108), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 105/521 (20%), Positives = 181/521 (34%), Gaps = 91/521 (17%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F  LM      G +   ++  +   +     +  +Y  ++    K G    A+   R+
Sbjct: 183 VTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRK 242

Query: 198 VID-EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           + +    IPN   Y  +I+ L   G+   A  +F  +    I      Y  ++ GF    
Sbjct: 243 MEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISG 302

Query: 257 RFDEAKSLLNEMRDDGKFPGRAMRVALER--MQEMGFIQGANEFLREMLPDKRIKNVRYY 314
           R+ +A+ LL EM +    P      AL    ++E  F + A E   EMLP   I +   Y
Sbjct: 303 RWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFE-AEELYDEMLPRSIIPSTVTY 361

Query: 315 EDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSL-LADAKFVWTT 373
               D    +N       R+     +  +L P          SP++++     A +    
Sbjct: 362 SSMIDGFCKQN-------RLDAAEHMF-YLTPTK------GCSPDIITFNTLIAGYCRAK 407

Query: 374 RL--VCKVLRHFKSP---------ETAWHFFCWVA------------YQPGYTHDVYALE 410
           R+    K+L                T  H FC V                G   +V    
Sbjct: 408 RVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCN 467

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRL----PFSTIRLIIDFYGISKKADAALKAFHD 466
            +L  L  +G ++    +   ++   M +    PF+ +   +  Y I             
Sbjct: 468 TLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNI------------- 514

Query: 467 DRTLCGPISKFKLM------------------LLYSSLLRTLTKCKRDFDAINVLEEMIF 508
              +CG I++ K +                  + YSS++  L K  R  +A  + + M  
Sbjct: 515 --LICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGS 572

Query: 509 SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY----- 563
               PDV TF+ L+  +   G      +LF  + Q G+  DA  +  LI  + K      
Sbjct: 573 KSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDG 632

Query: 564 -------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
                  + +S + PD  T   +   LW +   + A A+ E
Sbjct: 633 ALDIFQEMISSGVYPDTITIRNMLTGLWSKEELERAVAMLE 673


>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
          Length = 702

 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 106/528 (20%), Positives = 206/528 (39%), Gaps = 66/528 (12%)

Query: 109 ATVLAKSQRNHELKTLIG---DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQ 165
           +TV+A   R+  L   +    D+ +   +   V +  L+Q +  +G+    L    E   
Sbjct: 164 STVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMED 223

Query: 166 RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
                   +YN +   YA+ G   EA +    +  +G +PN+ TY  ++    N+G++D 
Sbjct: 224 SGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDE 283

Query: 226 ALEVFSALPLMRIKRTSKQYLI----LVEGFVGVE-RFDEAKSLLNEMRDDGKFPGRAMR 280
           AL +F      R+K+      +    L+ G +G + RF     +L EM   G  P R   
Sbjct: 284 ALALFD-----RMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNR--- 335

Query: 281 VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQL 340
           V    M  +   +G  +++  +L   +   V    D  +           G R  Y  ++
Sbjct: 336 VTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAY--GRCGSR-TYAFKM 392

Query: 341 KPWLDPKALANTLDEWSP--EVVSLLADAKFVWTT--RLVCKVLRH-FKSPETAWHFFCW 395
              +        L  ++    V+S   D    W+T   +V K+L++ FK  + ++     
Sbjct: 393 YDEMISSGFTPCLTTYNALLNVLSRQGD----WSTAQSIVSKMLKNGFKPNDQSYSLLLQ 448

Query: 396 VAYQPGYTHDVYALEKML---TILA-------------RHGHVELVDRLIAKLRSDGMRL 439
              + G    + ++EK +   TI               +   +E V++   ++++ G + 
Sbjct: 449 CYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKP 508

Query: 440 PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL---MLLYSSLLRTLTKCKRD 496
                  ++  Y  +     A + F         I +  L   ++ Y+SL+    K    
Sbjct: 509 DLVIFNSMLAMYAKNGLYSKATEMFDS-------IKQSGLSPDLITYNSLMDMYAKSNES 561

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
           ++A  +L+++  S + PDV +++ ++  F  QG  K  Q++ S +  +G+ P    +  L
Sbjct: 562 WEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTL 621

Query: 557 IQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           +  Y              Y+ + NL P   T   +  S  K  R  EA
Sbjct: 622 VGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDEA 669



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 23/225 (10%)

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
           PG   DV A   +L  L+R G  E   +L A+LR  G+     T  +++D YG   ++  
Sbjct: 83  PGSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWP 142

Query: 460 ALKAFHDDRTLCG-PISKFKLMLLYSSLLRTLTKCKRDF---DAINVLEEMIFSGIVPDV 515
            + A  ++    G     F       +    +  C RD     A+   E++   G VP V
Sbjct: 143 RIVALLEEMRAAGVEPDDF-------TASTVIAACGRDGLLDQAVAFFEDLKARGHVPCV 195

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------Y 563
            T++ L+  F   G+     ++   +  +G +PDA  +  L   Y +             
Sbjct: 196 VTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDT 255

Query: 564 LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
           +++  L+P+  T   +  +    GR  EA A+ +R +K   VP++
Sbjct: 256 MTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNV 300



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 94/509 (18%), Positives = 194/509 (38%), Gaps = 54/509 (10%)

Query: 69  PFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT 123
           P +VT+         A N   AL +++ ++ +     +  T + LA   A++    E   
Sbjct: 193 PCVVTYNALLQVFGKAGNYTEALRVLKEME-DSGCQPDAVTYNELAGTYARAGFFEEAAK 251

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
            +  ++S   L  +  +  +M  Y+  G ++  L+ ++  ++   + +  +YN++  +  
Sbjct: 252 CLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLG 311

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           K  +    +E   ++   G  PN  T+  M+      G  D    V + +    ++ +  
Sbjct: 312 KKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRD 371

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA-LERMQEMGFIQGANEFLREM 302
            Y  L+  +        A  + +EM   G  P      A L  +   G    A   + +M
Sbjct: 372 TYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKM 431

Query: 303 LPDKRIKN-------VRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDE 355
           L +    N       ++ Y  G +    E+ +      +  G     W+           
Sbjct: 432 LKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEK----EVYVGTIFPSWV----------- 476

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
               ++  L  A F           R  +  E A   F  V  Q GY  D+     ML +
Sbjct: 477 ----ILRTLVIANF---------KCRRLEGVEKA---FQEVKAQ-GYKPDLVIFNSMLAM 519

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
            A++G       +   ++  G+     T   ++D Y  S ++  A K     ++     S
Sbjct: 520 YAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKS-----S 574

Query: 476 KFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA-LQGDEKI 533
           + K  ++ Y++++    K     +A  +L EMI  G+ P V T+  L+  +A L+   + 
Sbjct: 575 QVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEA 634

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            + +  M+  N ++P    ++ ++ +YCK
Sbjct: 635 REVVNYMIHHN-LKPMELTYRRVVDSYCK 662



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 5/192 (2%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A++  E LK+  +      T +AL  V  K+    E   ++ ++  S     +V +  
Sbjct: 177 DQAVAFFEDLKARGHVPC-VVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNE 235

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L   Y+ +G  E      +    +  L +T +YN VM+ YA  G+  EA+  F ++   G
Sbjct: 236 LAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNG 295

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI--KRTSKQYLILVEGFVGVERFDE 260
            +PN  TY ++   L    +  + LE+   +        R +   ++ V G  G+E  D 
Sbjct: 296 YVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGME--DY 353

Query: 261 AKSLLNEMRDDG 272
              +LN M+  G
Sbjct: 354 VTRVLNGMKSCG 365



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 83/423 (19%), Positives = 164/423 (38%), Gaps = 33/423 (7%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF-EAVETFRQV 198
           +  ++   S +G  E  L  + E R++  + +  +YN+V+ VY + G+++   V    ++
Sbjct: 92  YTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEM 151

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
              G  P+  T + +I      G LD A+  F  L           Y  L++ F     +
Sbjct: 152 RAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNY 211

Query: 259 DEAKSLLNEMRDDGKFPGRAMRVALE-RMQEMGFIQGANEFLREMLPDKRIKNVRYYEDG 317
            EA  +L EM D G  P       L       GF + A + L  M     + N   Y   
Sbjct: 212 TEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTY--- 268

Query: 318 SDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVC 377
              +       N G R+   + L   +        ++ ++     L   ++F     ++ 
Sbjct: 269 ---NTVMTAYANVG-RVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLE 324

Query: 378 KVLRHFKSPE-TAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
           ++ R   +P    W+    V  + G       +E  +T            R++  ++S G
Sbjct: 325 EMSRSGCTPNRVTWNTMLAVCGKRG-------MEDYVT------------RVLNGMKSCG 365

Query: 437 MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
           + L   T   +I  YG       A K +  D  +    +    +  Y++LL  L++    
Sbjct: 366 VELSRDTYNTLISAYGRCGSRTYAFKMY--DEMISSGFT--PCLTTYNALLNVLSRQGDW 421

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
             A +++ +M+ +G  P+ Q++S L+  +A  G+   ++ +   V    + P   + + L
Sbjct: 422 STAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTL 481

Query: 557 IQA 559
           + A
Sbjct: 482 VIA 484



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 13/161 (8%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE------SYNIVMSVYAKTGKNFEA 191
           + + +LM  Y+ S +      +W   +   +L S++      SYN V++ + K G   EA
Sbjct: 546 ITYNSLMDMYAKSNE------SWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEA 599

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
                ++I +G  P   TY  ++    +L   + A EV + +    +K     Y  +V+ 
Sbjct: 600 QRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDS 659

Query: 252 FVGVERFDEAKSLLNEMRD-DGKFPGRAMRVALERMQEMGF 291
           +   +R+DEA+  L+E+ D D  F  +   +   R+++  F
Sbjct: 660 YCKAKRYDEAREFLSEISDTDQNFDQKLQHMLEARIKDAQF 700


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 102/242 (42%), Gaps = 12/242 (4%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHA--------LRSAPNADSALSIMEALK 93
           L+D      +     ++ +++  + + P +VT+         ++    A S L  M    
Sbjct: 273 LVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRG 332

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
            NP+      + + L     K ++  E   L  ++     +   V + +L+      G +
Sbjct: 333 VNPDIQ----SYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKI 388

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
              L   +E   R       +Y+ ++    K  +  +A+    ++ D+G  PN  TYT++
Sbjct: 389 SYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTIL 448

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           I+ L   G+L+ A  +F  L +     T   Y +++ GF     FDEA +LL++M+D+  
Sbjct: 449 IDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSC 508

Query: 274 FP 275
            P
Sbjct: 509 IP 510



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 47/83 (56%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +++YS+++  + K K   DA ++  EM+  GI P+V T+S L+  F   G  K    LF+
Sbjct: 197 VVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFN 256

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK 562
            +    ++PD Y F +L+  +CK
Sbjct: 257 KMILENIKPDVYTFNILVDGFCK 279



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 88/201 (43%), Gaps = 1/201 (0%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T + L     K  +  E KT+   +         V + +LM  Y    ++    S     
Sbjct: 269 TFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTM 328

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
            QR      +SYNI++  + K  K  EA+  F+++  +  IP+  TY  +I+ L  LGK+
Sbjct: 329 SQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKI 388

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVA 282
             AL++   +    +      Y  +++      + D+A +LL +++D G  P      + 
Sbjct: 389 SYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTIL 448

Query: 283 LERMQEMGFIQGANEFLREML 303
           ++ + + G ++ A+    ++L
Sbjct: 449 IDGLCKGGRLEDAHNIFEDLL 469



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 76/166 (45%), Gaps = 1/166 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+  + T G L+  +  +N+           ++NI++  + K GK  E    F  
Sbjct: 233 VTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAM 292

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++ +G  PN  TY  +++    + +++ A  +   +    +    + Y IL++GF  +++
Sbjct: 293 MMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKK 352

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREM 302
            DEA +L  EM      P      +L + + ++G I  A + + EM
Sbjct: 353 VDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEM 398



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 85/207 (41%), Gaps = 20/207 (9%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           DVY    ++    + G ++    + A +   G++    T   ++D Y + K+ + A    
Sbjct: 266 DVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSIL 325

Query: 465 H--DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
           +    R +   I        Y+ L+    K K+  +A+N+ +EM    I+PDV T++ L+
Sbjct: 326 YTMSQRGVNPDIQS------YNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLI 379

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLM 570
                 G      KL   +   GV PD   +  ++ A CK             L +  + 
Sbjct: 380 DGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIR 439

Query: 571 PDAATKELLKKSLWKEGRRKEAAAVEE 597
           P+  T  +L   L K GR ++A  + E
Sbjct: 440 PNMYTYTILIDGLCKGGRLEDAHNIFE 466



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 43/79 (54%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS+L+       +  DAI++  +MI   I PDV TF+ L+  F   G  K  + +F+M+ 
Sbjct: 235 YSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMM 294

Query: 543 QNGVEPDAYMFKVLIQAYC 561
           + G++P+   +  L+  YC
Sbjct: 295 KQGIKPNVVTYCSLMDGYC 313



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 47/94 (50%)

Query: 190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV 249
           +A + + +++ +G  PN  TY+ +I     +G+L  A+++F+ + L  IK     + ILV
Sbjct: 215 DAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILV 274

Query: 250 EGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
           +GF    +  E K++   M   G  P      +L
Sbjct: 275 DGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSL 308


>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 1627

 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 88/493 (17%), Positives = 194/493 (39%), Gaps = 42/493 (8%)

Query: 88   IMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWY 147
            +++ +  NP      + L  +  +L  ++   +  T+   I + K   ++  + +++   
Sbjct: 1135 MIQEMVRNPICVVTPTELSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIML 1194

Query: 148  STSGDLELVLSTWNEYRQRAKLLS-TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206
               G  E V   +NE          T +Y+ ++S + K G+   A++   ++ + G  P 
Sbjct: 1195 MHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPT 1254

Query: 207  SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
            ++ YT++I           AL +F  +     +     Y  L+ G     R DEA     
Sbjct: 1255 TKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFC 1314

Query: 267  EMRDDGKFPGRA-MRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDEN 325
            EM+ +G  P    M   +  + + G +  A +  +EM   + I +V              
Sbjct: 1315 EMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSV-------------- 1360

Query: 326  DDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVV-SLLADAKFVWTTRL--VCKVLRH 382
                    + Y   +K   + K+ A+ +  W   +  S ++ + F ++  +   CK  R 
Sbjct: 1361 --------VTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRM 1412

Query: 383  FKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFS 442
             K+             + G+     A   ++  L +    +L   L  +L+ +       
Sbjct: 1413 EKA-----MMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSAR 1467

Query: 443  TIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAIN 501
               ++I   G + + D A+  F +   L C P      +  Y++L+  L +     +A++
Sbjct: 1468 VYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPD-----VYAYNALMSGLARTGMLDEALS 1522

Query: 502  VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
             +  M   G +PD+ +++ ++   A  G      ++ S ++Q+ V PD   +  ++ A  
Sbjct: 1523 TMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGA-- 1580

Query: 562  KYLSNSNLMPDAA 574
              LS++ +  +A+
Sbjct: 1581 --LSHAGMFEEAS 1591



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 97/226 (42%), Gaps = 21/226 (9%)

Query: 54   SSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLA 113
            S  S SS     L+D F  T+ +      + A+ ++E +     F    +   +L   L 
Sbjct: 1390 SGISPSSFTYSILIDGFCKTNRM------EKAMMLLEEMDEK-GFPPCPAAYCSLIDALG 1442

Query: 114  KSQRN-------HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR 166
            K++R         ELK   G  SS++   V +  +        +G L+  ++ ++E  + 
Sbjct: 1443 KAKRYDLACELFQELKENCGS-SSARVYAVMIKHLG------KAGRLDDAINMFDEMNKL 1495

Query: 167  AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
                   +YN +MS  A+TG   EA+ T R++ + G IP+  +Y +++  L   G    A
Sbjct: 1496 GCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRA 1555

Query: 227  LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
            +E+ S +    ++     Y  ++        F+EA  L+ EM   G
Sbjct: 1556 MEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLG 1601



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 96/220 (43%), Gaps = 26/220 (11%)

Query: 391  HFFCWVAYQPGYTHDV---YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLI 447
             FF W A +  Y HD     AL   L ++ ++G  E+   +   +R+    +  + +  +
Sbjct: 1098 QFFRWAAKRRNYEHDTSTYMALIHCLEVVEQYG--EMWKMIQEMVRNPICVVTPTELSDV 1155

Query: 448  IDFYGISKKADAALKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVL-EE 505
            +   G +K    A+  F+  +T  C PI++      Y+S++  L   +  ++ ++ L  E
Sbjct: 1156 VRMLGNAKMVRQAITIFYQIKTRKCQPIAQ-----AYNSMIIMLMH-EGQYEKVHQLYNE 1209

Query: 506  MIFSG-IVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY- 563
            M   G   PD  T+S L+  F   G      +L + +++ G++P   ++ +LI  + K+ 
Sbjct: 1210 MSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFN 1269

Query: 564  -----------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                       + +    PD  T   L + L K GR  EA
Sbjct: 1270 DAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEA 1309


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 86/387 (22%), Positives = 157/387 (40%), Gaps = 38/387 (9%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           Y++++  Y K GK  EA   F +++ +   PN+ T+  +I  L + G L  AL +F  + 
Sbjct: 400 YSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMV 459

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQ 293
            M +K T   + IL+   +    FD+A   L +M   G+ P  R     +E     G +Q
Sbjct: 460 KMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQ 519

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTL 353
            A + + +M            E+G   D    D   + +  AYG     +     L +  
Sbjct: 520 EAEDMMVQM-----------KEEGVPPD----DFTYTSLIKAYGKLGLTYSAFDVLKSMF 564

Query: 354 D-EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
           D +  P   + L+  K ++  R V +     KS ET           PG       + KM
Sbjct: 565 DADCEPSHHTFLSLIKQLFDKRYVVE-----KSGETGVESVSNFGDVPGSN-----MWKM 614

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
           +         ++V  L  ++   G          +I   GI K  +  +     D+    
Sbjct: 615 M-------EFDIVIELFEEMEKHGCTPDSKCYEKLIS--GICKVENLGIALKLLDQMQKE 665

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
            IS  +  +++++++    K ++  +A N++E+MI SG  P ++    L+     +G+ +
Sbjct: 666 GISPSE--MVFNAVISCCCKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGETE 723

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQA 559
               +F  +R  G   D   +K+LI  
Sbjct: 724 RGNSVFKKLRGCGYNDDEIAWKILIDG 750



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 4/141 (2%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++N++++VY K G   EA +   ++I  G  P+  T T  I        +DSA  VF  +
Sbjct: 194 TFNLMINVYCKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEM 253

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
           P     R    Y  L+ G     R DEA SL   M+DD  +P      AL +      + 
Sbjct: 254 P----NRNEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRKNVH 309

Query: 294 GANEFLREMLPDKRIKNVRYY 314
            A   L EML    + ++  Y
Sbjct: 310 KAMGLLDEMLERNLVPDLITY 330



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/244 (20%), Positives = 100/244 (40%), Gaps = 3/244 (1%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + H L  A   D A+S+   +K +  +  N  T  AL   L + +  H+   L+ ++   
Sbjct: 264 LIHGLCEAGRIDEAVSLFVRMKDDCCYP-NVYTYTALIKGLCR-KNVHKAMGLLDEMLER 321

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
             +   + + +L+     +G L+      +  ++R  +    +Y   +    K+ +  EA
Sbjct: 322 NLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEA 381

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
              F  + +EG   N   Y+V+I+    +GK+D A  +F  +        +  +  L+ G
Sbjct: 382 RRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHG 441

Query: 252 FVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKN 310
                   EA SL ++M   G  P      + + RM + G    A++ L++M+       
Sbjct: 442 LCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPV 501

Query: 311 VRYY 314
            R Y
Sbjct: 502 ARTY 505



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 4/153 (2%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           D+     ++    R GH++   RL++ ++  G+     T    IDF   S + + A + F
Sbjct: 326 DLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLF 385

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
            D  T  G  +    +++YS L+    K  +  +A  + E+M+     P+  TF+ L++ 
Sbjct: 386 -DSLTEEGVSAN---VIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHG 441

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
               G+ K    LF  + + G++P  Y F +LI
Sbjct: 442 LCSAGNLKEALSLFDQMVKMGLKPTVYTFNILI 474



 Score = 47.0 bits (110), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 58/278 (20%), Positives = 106/278 (38%), Gaps = 75/278 (26%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           D+Y    M+ +  + G V+   + + K+   G+   + T    I  Y  SK  D+A + F
Sbjct: 191 DIYTFNLMINVYCKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVF 250

Query: 465 HD--DRT----------LC--GPISK-------------FKLMLLYSSLLRTLTKCKRDF 497
            +  +R           LC  G I +             +  +  Y++L++ L + K   
Sbjct: 251 EEMPNRNEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCR-KNVH 309

Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD-------- 549
            A+ +L+EM+   +VPD+ T++ L+      G      +L S++++ G+ PD        
Sbjct: 310 KAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFI 369

Query: 550 ---------------------------AYMFKVLIQAYCKY------------LSNSNLM 570
                                        M+ VLI  YCK             + + N  
Sbjct: 370 DFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCS 429

Query: 571 PDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
           P+A T   L   L   G  KEA ++ ++  K+   P++
Sbjct: 430 PNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTV 467



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 10/152 (6%)

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-- 470
           +  L +   VE   RL   L  +G+        ++ID Y    K D A   F  ++ L  
Sbjct: 369 IDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLF--EKMLSK 426

Query: 471 -CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
            C P +       +++L+  L       +A+++ ++M+  G+ P V TF+ L+     QG
Sbjct: 427 NCSPNA-----YTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQG 481

Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           D     K    +  +G +P A  +   I+ YC
Sbjct: 482 DFDDAHKCLQKMMSSGEKPVARTYNAFIEVYC 513



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 20/178 (11%)

Query: 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR 445
           P TA  F  W++  P + H+V +   +LT++  H           K+ SD  ++  S I+
Sbjct: 81  PHTALQFSYWISQTPNFKHNVDSYASLLTLIDHH-----------KIVSDVPKIIVSMIK 129

Query: 446 LIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVL-E 504
                      +D   K   DD      I+K  L   Y+ LL  L +     D +N L  
Sbjct: 130 CCYSAPDALFVSDICRKMSKDD------ITKLSLK-CYNELLTLLARFGL-VDEMNQLYT 181

Query: 505 EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           EM+   +  D+ TF+ ++  +   G  K  ++    + Q G+ PD +     I  YC+
Sbjct: 182 EMLEEFVSMDIYTFNLMINVYCKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYCR 239



 Score = 42.7 bits (99), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 80/222 (36%), Gaps = 30/222 (13%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A  + E + S  N S N  T +AL   L  +    E  +L   +           F  
Sbjct: 414 DEAGCLFEKMLSK-NCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNI 472

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+      GD +       +     +     +YN  + VY   GK  EA +   Q+ +EG
Sbjct: 473 LIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEG 532

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSAL------P-----LMRIKRT-SKQYLILVE 250
             P+  TYT +I+    LG   SA +V  ++      P     L  IK+   K+Y++   
Sbjct: 533 VPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYVVEKS 592

Query: 251 GFVGVE-----------------RFDEAKSLLNEMRDDGKFP 275
           G  GVE                  FD    L  EM   G  P
Sbjct: 593 GETGVESVSNFGDVPGSNMWKMMEFDIVIELFEEMEKHGCTP 634


>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
 gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g31400, chloroplastic; Flags: Precursor
 gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
 gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
          Length = 918

 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 79/159 (49%), Gaps = 4/159 (2%)

Query: 404 HDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKA 463
            DV++   +L  + + G ++L   ++A++    +     +   +ID +  + + D AL  
Sbjct: 372 QDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNL 431

Query: 464 FHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
           F + R L   + +      Y++LL   TK  R  +A+++L EM   GI  DV T++ L+ 
Sbjct: 432 FGEMRYLGIALDRVS----YNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLG 487

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            +  QG    V+K+F+ +++  V P+   +  LI  Y K
Sbjct: 488 GYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSK 526



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 79/178 (44%), Gaps = 1/178 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V++  ++  ++ +G  +  L+ + E R     L   SYN ++S+Y K G++ EA++  R+
Sbjct: 410 VSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILRE 469

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G   +  TY  ++      GK D   +VF+ +    +      Y  L++G+     
Sbjct: 470 MASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGL 529

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
           + EA  +  E +  G      +  AL + + + G +  A   + EM  +    NV  Y
Sbjct: 530 YKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTY 587



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 6/167 (3%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVS---VNFMNLMQWYSTSGDLELVLSTWNEYRQRAK 168
            AK+ R  E   L G++   ++L ++   V++  L+  Y+  G  E  L    E      
Sbjct: 419 FAKAGRFDEALNLFGEM---RYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGI 475

Query: 169 LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALE 228
                +YN ++  Y K GK  E  + F ++  E  +PN  TY+ +I+     G    A+E
Sbjct: 476 KKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAME 535

Query: 229 VFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +F       ++     Y  L++          A SL++EM  +G  P
Sbjct: 536 IFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISP 582



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 59/135 (43%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + F +L+   S  G  E   + ++E   R       SYN ++    K G+   A E   Q
Sbjct: 340 ITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQ 399

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +  +  +PN  +Y+ +I+     G+ D AL +F  +  + I      Y  L+  +  V R
Sbjct: 400 MPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGR 459

Query: 258 FDEAKSLLNEMRDDG 272
            +EA  +L EM   G
Sbjct: 460 SEEALDILREMASVG 474



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 41/197 (20%), Positives = 80/197 (40%), Gaps = 23/197 (11%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           M++ L R+G V +  R+     + G          +I  YG S   + A+  F+      
Sbjct: 239 MISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNS----- 293

Query: 472 GPISKFKL---MLLYSSLLRTLTKCKRDFDAI-NVLEEMIFSGIVPDVQTFSGLMYHFAL 527
             + ++ L   ++ Y++++    K   +F  +    +EM  +G+ PD  TF+ L+   + 
Sbjct: 294 --MKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSR 351

Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAAT 575
            G  +  + LF  +    +E D + +  L+ A CK             +    +MP+  +
Sbjct: 352 GGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVS 411

Query: 576 KELLKKSLWKEGRRKEA 592
              +     K GR  EA
Sbjct: 412 YSTVIDGFAKAGRFDEA 428



 Score = 46.6 bits (109), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 37/199 (18%), Positives = 86/199 (43%), Gaps = 1/199 (0%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T ++L  V ++       + L  ++++ +      ++  L+      G ++L      + 
Sbjct: 341 TFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQM 400

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
             +  + +  SY+ V+  +AK G+  EA+  F ++   G   +  +Y  ++     +G+ 
Sbjct: 401 PVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRS 460

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVA 282
           + AL++   +  + IK+    Y  L+ G+    ++DE K +  EM+ +   P        
Sbjct: 461 EEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTL 520

Query: 283 LERMQEMGFIQGANEFLRE 301
           ++   + G  + A E  RE
Sbjct: 521 IDGYSKGGLYKEAMEIFRE 539



 Score = 40.0 bits (92), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 66/149 (44%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           + + L ++  K  R+ E   ++ +++S       V +  L+  Y   G  + V   + E 
Sbjct: 446 SYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEM 505

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
           ++   L +  +Y+ ++  Y+K G   EA+E FR+    G   +   Y+ +I+ L   G +
Sbjct: 506 KREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLV 565

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGF 252
            SA+ +   +    I      Y  +++ F
Sbjct: 566 GSAVSLIDEMTKEGISPNVVTYNSIIDAF 594


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 86/431 (19%), Positives = 178/431 (41%), Gaps = 38/431 (8%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + F  L+     +G+    L  +++   R       +Y  +++   K G+   A    ++
Sbjct: 162 ITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKK 221

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + + G  P+  TY+ +I+ L     ++ AL++FS +    I  T   Y  L++G     R
Sbjct: 222 MGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSR 281

Query: 258 FDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
           + EA ++LNEM      P      + ++   + G +  A   L+ M       NV  Y  
Sbjct: 282 WKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITY-- 339

Query: 317 GSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTL--DEWSPEVVSLLADAKFVWTTR 374
                       NS +   Y +Q++  ++ + L + +      P+V S      +     
Sbjct: 340 ------------NSLMH-GYSLQME-VVEARKLFDVMITRGCKPDVFS------YSILIN 379

Query: 375 LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
             C V    K  + A   F  + +Q G T +  +   ++    + G +     L   + +
Sbjct: 380 GYCMV----KRIDEAKQLFNEMIHQ-GLTPNTVSYTTLIHAFCQLGKLREARELFKDMHT 434

Query: 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCK 494
           +G      T  ++++  G  K+     KAF   R + G   K  L ++Y+ L+ ++ K  
Sbjct: 435 NGYLPDLCTYSVLLE--GFCKQGYLG-KAFRLFRAMQGTYLKPNL-VMYTILIDSMCKSG 490

Query: 495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG--DEKIVQKLFSMVRQNGVEPDAYM 552
               A  +  E+   G+ PDVQ ++ ++     +G  DE +  + F  + ++G  P+ + 
Sbjct: 491 NLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEAL--EAFRKMEEDGCPPNEFS 548

Query: 553 FKVLIQAYCKY 563
           + V+I+ + ++
Sbjct: 549 YNVIIRGFLQH 559



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 89/451 (19%), Positives = 173/451 (38%), Gaps = 45/451 (9%)

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF-RQVIDEGAIPNSRTYTVMIE 215
           L+++N    R  L     +N ++S   +  + ++AV +  +Q+   G  PN+ T  ++I 
Sbjct: 75  LASFNHMLHRKPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLNILIN 134

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               +  +D    V + +  + ++ T   +  L+ G      F +A  L ++M   G  P
Sbjct: 135 CFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQP 194

Query: 276 G-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRI 334
                   +  + +MG    A   +++M       +V  Y    D    +   N +    
Sbjct: 195 DVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEA---- 250

Query: 335 AYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFC 394
              + +  ++  K +       SP VVS      +    + +C   R +K      +   
Sbjct: 251 ---LDIFSYMKAKGI-------SPTVVS------YTSLIQGLCSFSR-WKEASAMLNEMT 293

Query: 395 WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS 454
            +   P    D+     ++ I  + G+V     ++  +   G+     T   ++  Y + 
Sbjct: 294 SLNIMP----DIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQ 349

Query: 455 KKADAALKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP 513
            +   A K F    T  C P      +  YS L+      KR  +A  +  EMI  G+ P
Sbjct: 350 MEVVEARKLFDVMITRGCKPD-----VFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTP 404

Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--YLS------ 565
           +  +++ L++ F   G  +  ++LF  +  NG  PD   + VL++ +CK  YL       
Sbjct: 405 NTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLF 464

Query: 566 ----NSNLMPDAATKELLKKSLWKEGRRKEA 592
                + L P+     +L  S+ K G    A
Sbjct: 465 RAMQGTYLKPNLVMYTILIDSMCKSGNLNHA 495



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 88/225 (39%), Gaps = 5/225 (2%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           A   L  M  +   PN     S +H  +  +   +       +I         + S+   
Sbjct: 320 AQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSI--- 376

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            L+  Y     ++     +NE   +    +T SY  ++  + + GK  EA E F+ +   
Sbjct: 377 -LINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTN 435

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G +P+  TY+V++E     G L  A  +F A+    +K     Y IL++        + A
Sbjct: 436 GYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHA 495

Query: 262 KSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPD 305
           + L +E+   G  P  +     +  + + G +  A E  R+M  D
Sbjct: 496 RKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEED 540



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 93/214 (43%), Gaps = 30/214 (14%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD-- 458
           G + +   L  ++       HV+L   ++AK+   G++    T   +I+  G+ K  +  
Sbjct: 121 GLSPNTCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLIN--GLCKAGEFA 178

Query: 459 AALKAFHDDRTL--CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
            AL+ F DD     C P      +  Y++++  L K      A  ++++M   G  PDV 
Sbjct: 179 QALELF-DDMVARGCQPD-----VYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVV 232

Query: 517 TFSGLMYHFALQGDEKIVQK---LFSMVRQNGVEPDAYMFKVLIQAYCKY---------- 563
           T+S L+        +++V +   +FS ++  G+ P    +  LIQ  C +          
Sbjct: 233 TYSTLIDSLC---KDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAML 289

Query: 564 --LSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
             +++ N+MPD  T  LL     KEG   EA  V
Sbjct: 290 NEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGV 323



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 4/182 (2%)

Query: 116 QRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
           +R  E K L  ++        +V++  L+  +   G L      + +      L    +Y
Sbjct: 385 KRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTY 444

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           ++++  + K G   +A   FR +      PN   YT++I+ +   G L+ A ++FS L +
Sbjct: 445 SVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFV 504

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGA 295
             ++   + Y  ++ G       DEA     +M +DG  P       + R    GF+Q  
Sbjct: 505 HGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIR----GFLQHK 560

Query: 296 NE 297
           +E
Sbjct: 561 DE 562



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/141 (21%), Positives = 60/141 (42%), Gaps = 12/141 (8%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ +++L+  L K      A+ + ++M+  G  PDV T++ ++      G+      L  
Sbjct: 161 IITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIK 220

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEG 587
            + + G +PD   +  LI + CK            Y+    + P   +   L + L    
Sbjct: 221 KMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFS 280

Query: 588 RRKEAAAVEERCEKINDVPSL 608
           R KEA+A+      +N +P +
Sbjct: 281 RWKEASAMLNEMTSLNIMPDI 301



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 72/177 (40%), Gaps = 4/177 (2%)

Query: 96  PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLEL 155
           PN     + +HA   +     +  E + L  D+ ++ +L     +  L++ +   G L  
Sbjct: 404 PNTVSYTTLIHAFCQL----GKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGK 459

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
               +   +      +   Y I++    K+G    A + F ++   G  P+ + YT +I 
Sbjct: 460 AFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIIN 519

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
            L   G LD ALE F  +           Y +++ GF+  +    A  L+ EMRD G
Sbjct: 520 GLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKG 576


>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
 gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 908

 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 90/431 (20%), Positives = 172/431 (39%), Gaps = 42/431 (9%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           Y +V+    +     +A E   Q    G   +  TY V I  L    ++  A+EV  +L 
Sbjct: 228 YTVVVKCLCELKDFNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLG 287

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQ 293
              +K     Y  LV G   ++ F+    +++EM + G  P  A    L E + +MG I+
Sbjct: 288 EKGLKADLVTYCTLVLGLCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIE 347

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTL 353
           GA E L ++     + N+  Y    +          +   + + V  +  L+P  +  T+
Sbjct: 348 GAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEA--ELLFSVMAERGLNPNDVTYTI 405

Query: 354 DEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKML 413
                     L D  F    +L           + A+++F  +  + G +  VY+   M+
Sbjct: 406 ----------LIDG-FGRRAKL-----------DVAFYYFNKMI-ECGISATVYSYNSMI 442

Query: 414 TILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGP 473
               + G +++ + L  ++   G++   +T   +I  Y        A K +H+  T  G 
Sbjct: 443 NCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHE-MTGKGI 501

Query: 474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
                  + +++L+  L +  +  +A  + +EM+   I+P+  T++ L+     +G+   
Sbjct: 502 APN---TVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIEGHCREGNTTR 558

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKK 581
             +L   + + G+ PD Y ++ LI   C              L + +   D      L +
Sbjct: 559 AFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTALLQ 618

Query: 582 SLWKEGRRKEA 592
              KEGR KEA
Sbjct: 619 GFCKEGRIKEA 629



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 1/133 (0%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  +  SG+L+     W        + ++ +Y  +++   K G   EA   F++++   
Sbjct: 685 LIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGE 744

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
           AIPN  TY   ++HL   G +++AL++ +A+       T   Y IL+ G+  + +F EA 
Sbjct: 745 AIPNHITYGCFLDHLTKEGNMENALQLHNAMLQGSFANTV-TYNILIRGYCQIGKFQEAA 803

Query: 263 SLLNEMRDDGKFP 275
            LL+ M   G  P
Sbjct: 804 KLLDVMIGIGMVP 816



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 43/79 (54%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+R   +  +  +A  +L+ MI  G+VPD  T+S  +Y +  +G+      ++  + 
Sbjct: 786 YNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECML 845

Query: 543 QNGVEPDAYMFKVLIQAYC 561
           Q G++PD  +F  LI A C
Sbjct: 846 QRGLKPDRVVFNFLIHACC 864



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 75/178 (42%), Gaps = 1/178 (0%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T  AL   L K+   +E K L   +   + +   + +   +   +  G++E  L   
Sbjct: 713 NSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLH 772

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           N   Q     +T +YNI++  Y + GK  EA +    +I  G +P+  TY+  I      
Sbjct: 773 NAMLQ-GSFANTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKR 831

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA 278
           G +D+A++++  +    +K     +  L+         D A  L N+M   G  P ++
Sbjct: 832 GNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLKPTQS 889



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 1/133 (0%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           +  +Y  ++S Y K G   +A + + ++  +G  PN+ T+T +I  L  + K+  A ++F
Sbjct: 469 TVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLF 528

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEM 289
             +  ++I      Y +L+EG         A  LL+EM   G  P     R  +  +   
Sbjct: 529 DEMVELKILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCST 588

Query: 290 GFIQGANEFLREM 302
           G +  A EF+ ++
Sbjct: 589 GRVSEAKEFINDL 601



 Score = 47.0 bits (110), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 82/199 (41%), Gaps = 1/199 (0%)

Query: 106 HALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQ 165
           +++   L K+ +  E + L   ++        V +  L+  +     L++    +N+  +
Sbjct: 369 NSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIE 428

Query: 166 RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
                +  SYN +++   K GK   A   F++++D+G  P   TYT +I      G +  
Sbjct: 429 CGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPK 488

Query: 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALE 284
           A +++  +    I   +  +  L+ G   + +  EA  L +EM +    P      V +E
Sbjct: 489 AFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIE 548

Query: 285 RMQEMGFIQGANEFLREML 303
                G    A E L EM+
Sbjct: 549 GHCREGNTTRAFELLDEMI 567



 Score = 43.9 bits (102), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 44/80 (55%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           +  L++   + KR  D + V+  M   G++P+V+T S L+   A     + V +LF  + 
Sbjct: 158 FDMLIQHYVQNKRVMDGVLVVNLMRDYGLLPEVRTLSALLNALARIRKFRQVLELFDTLV 217

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
             GV+PD Y++ V+++  C+
Sbjct: 218 NAGVKPDCYIYTVVVKCLCE 237



 Score = 43.1 bits (100), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 27/129 (20%), Positives = 55/129 (42%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           + +L+  Y   G +      ++E   +    +T ++  ++    +  K  EA + F +++
Sbjct: 473 YTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMV 532

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           +   +PN  TY V+IE     G    A E+   +    +   +  Y  L+ G     R  
Sbjct: 533 ELKILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVS 592

Query: 260 EAKSLLNEM 268
           EAK  +N++
Sbjct: 593 EAKEFINDL 601



 Score = 42.4 bits (98), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 1/106 (0%)

Query: 168 KLLSTE-SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
           K+L  E +YN+++  + + G    A E   ++I +G  P++ TY  +I  L + G++  A
Sbjct: 535 KILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEA 594

Query: 227 LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
            E  + L     +     Y  L++GF    R  EA     EM   G
Sbjct: 595 KEFINDLHHKHQRLDELCYTALLQGFCKEGRIKEALVARQEMVGRG 640



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 63/130 (48%), Gaps = 13/130 (10%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           L Y++LL+   K  R  +A+   +EM+  G+  D+ +++ L+   AL  +++I+ +L   
Sbjct: 611 LCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISG-ALNQNDRILFELLRE 669

Query: 541 VRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGR 588
           +   G++PD  ++ +LI  + K             +     +P++ T   L   L+K G 
Sbjct: 670 MHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGY 729

Query: 589 RKEAAAVEER 598
             EA  + +R
Sbjct: 730 VNEAKLLFKR 739


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 86/411 (20%), Positives = 154/411 (37%), Gaps = 72/411 (17%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN V+  + K G   +A + F++++  G  P+  TY  ++  L     +D A      +
Sbjct: 221 AYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQM 280

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA-MRVALERMQEMGFI 292
              R+   +  Y  L+ G+    ++ EA  +  EMR     P    + + +  + + G I
Sbjct: 281 VNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKI 340

Query: 293 QGANEFLREML-----PDKRIKNVR---YYEDGSDDDEDENDDNNSGVRIA-----YGVQ 339
           + A +    M      PD    N+    Y   G   D  +  D   G  IA     + V 
Sbjct: 341 KEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVL 400

Query: 340 LKPWLDPKALANTLDEWS--------PEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWH 391
           +K + +   L   +  ++        P+VV          T R V   L      + A  
Sbjct: 401 IKAYANCGMLDKAMIIFNEMRDHGVKPDVV----------TYRTVIAALCRIGKMDDAME 450

Query: 392 FFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY 451
            F  +  Q G   D YA   ++     HG +     LI+++ ++GM L            
Sbjct: 451 KFNQMIDQ-GVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLD----------- 498

Query: 452 GISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
                                       ++ +SS++  L K  R  DA N+ +  +  G+
Sbjct: 499 ----------------------------IVFFSSIINNLCKLGRVMDAQNIFDLTVNVGL 530

Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            PD   +S LM  + L G  +   ++F  +   G+EP+  ++  L+  YCK
Sbjct: 531 HPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCK 581



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 109/544 (20%), Positives = 207/544 (38%), Gaps = 70/544 (12%)

Query: 96  PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLEL 155
           P+     S +HAL    A  +    L+ ++    + + L  +  + NL+  YS++G  + 
Sbjct: 252 PDLVTYNSVVHALCKARAMDKAEAFLRQMV----NKRVLPNNWTYNNLIYGYSSTGQWKE 307

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
            +  + E R+ + L    + +++M    K GK  EA + F  +  +G  P+  +Y +M+ 
Sbjct: 308 AVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLN 367

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                G L    ++F  +    I      + +L++ +      D+A  + NEMRD G  P
Sbjct: 368 GYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKP 427

Query: 276 GRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRI 334
                R  +  +  +G +  A E   +M+ D+ +   +Y                     
Sbjct: 428 DVVTYRTVIAALCRIGKMDDAMEKFNQMI-DQGVAPDKY--------------------- 465

Query: 335 AYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLV---CKVLRHFKSPETAWH 391
           AY   ++ +    +L     E   E+++       V+ + ++   CK+ R   + +  + 
Sbjct: 466 AYNCLIQGFCTHGSLLKA-KELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDA-QNIFD 523

Query: 392 FFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY 451
               V   P    D      ++      G +E   R+   + S G+         +++ Y
Sbjct: 524 LTVNVGLHP----DAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGY 579

Query: 452 GISKKADAALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS 509
               + D  L  F +   R +  P +     +LYS ++  L +  R   A     EM  S
Sbjct: 580 CKIGRIDEGLSLFREMLQRGI-KPST-----ILYSIIIDGLFQAGRTVPAKVKFHEMTES 633

Query: 510 GIVPDVQTFSGLMYHFALQG-------DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           GI  D+ T     Y+  L+G       DE I   LF  +R   V+ +      +I    +
Sbjct: 634 GIAMDICT-----YNIVLRGLFKNRCFDEAIF--LFKELRAMNVKINIITLNTMIDGMFQ 686

Query: 563 Y------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLAL 610
                        +S S L+P   T  ++  +L KEG  +EA  +    +     P+  L
Sbjct: 687 TRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRL 746

Query: 611 RGHI 614
             H+
Sbjct: 747 LNHV 750



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 96/233 (41%), Gaps = 2/233 (0%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           V HAL  A   D A + +  +  N     N  T + L    + + +  E   +  ++   
Sbjct: 260 VVHALCKARAMDKAEAFLRQM-VNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRH 318

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
             L   V    LM      G ++     ++    + +     SYNI+++ YA  G   + 
Sbjct: 319 SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDM 378

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
            + F  ++ +G  P+  T+ V+I+   N G LD A+ +F+ +    +K     Y  ++  
Sbjct: 379 TDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAA 438

Query: 252 FVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREML 303
              + + D+A    N+M D G  P + A    ++     G +  A E + E++
Sbjct: 439 LCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIM 491



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 82/207 (39%), Gaps = 19/207 (9%)

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALK 462
           T   YA+  ++    R    EL      +L   G+R+       +++ +  +K+ D AL 
Sbjct: 110 TSHTYAI--LMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALD 167

Query: 463 AFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV--PDVQTFSG 520
                    G +     +  YS LL++L    +   A ++L  M   G V  P+V  ++ 
Sbjct: 168 ILLHRTPELGCVPD---VFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNT 224

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSN 568
           ++  F  +GD      LF  + Q G+ PD   +  ++ A CK             + N  
Sbjct: 225 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKR 284

Query: 569 LMPDAATKELLKKSLWKEGRRKEAAAV 595
           ++P+  T   L       G+ KEA  V
Sbjct: 285 VLPNNWTYNNLIYGYSSTGQWKEAVRV 311



 Score = 40.8 bits (94), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 23/156 (14%)

Query: 452 GISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
           G S +AD  L+   +   +C P      ++ Y++++    K      A ++ +EM+  GI
Sbjct: 196 GKSGQADDLLRMMAEGGAVCSPN-----VVAYNTVIDGFFKEGDVNKACDLFKEMVQRGI 250

Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ---NGVEPDAYMFKVLIQAYC------- 561
            PD+ T++ +++        + + K  + +RQ     V P+ + +  LI  Y        
Sbjct: 251 PPDLVTYNSVVHALC---KARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKE 307

Query: 562 -----KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                K +   +++PD  T  +L  SL K G+ KEA
Sbjct: 308 AVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEA 343


>gi|168066970|ref|XP_001785401.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662982|gb|EDQ49775.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 318

 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 81/191 (42%), Gaps = 2/191 (1%)

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
           S   + HN  T  AL  +  +++    ++ ++ ++         V F  +M+WY  + +L
Sbjct: 1   SKIGYQHNMYTYTALIDLYGRAKNYEAVEEVLAEMCEVGCDVSIVTFSLVMRWYREAKNL 60

Query: 154 ELVLSTWNEYRQRAKLLSTES-YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
             +     E+ QR   L  E  Y   +    K   + EA+  F+++ D    PN  TY V
Sbjct: 61  AGIRRVL-EHMQREGCLPNEYIYTTFIDALDKDTCHEEALAVFKEMRDSNWEPNIFTYNV 119

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +I  L   GKLD A E+F  LP    +     Y ILV   V     ++A   L  M + G
Sbjct: 120 LIHSLATAGKLDGAREMFGRLPEPHHRPNFVTYTILVTAHVKAGELEKAVHFLKTMMEAG 179

Query: 273 KFPGRAMRVAL 283
             P   +R  L
Sbjct: 180 FMPSHGLRSIL 190



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 97/209 (46%), Gaps = 18/209 (8%)

Query: 71  IVTHALRSAPNADSALSIMEAL---KSNPNFSHNQ--STLHALATVLAKSQRNHELKTLI 125
           ++ H+L +A   D A  +   L      PNF       T H  A  L K+   H LKT++
Sbjct: 119 VLIHSLATAGKLDGAREMFGRLPEPHHRPNFVTYTILVTAHVKAGELEKAV--HFLKTMM 176

Query: 126 --GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
             G + S      S+ F  LM      G  + VL    E   R  + +   Y++++ + +
Sbjct: 177 EAGFMPSHGLR--SILFTALM----AKGRADEVLDNMKERGHRPNVYT---YSMLIDLLS 227

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           +T  +  A++ ++++    + PN  TYT +I  L   GK+++A  +F  LP + I  ++ 
Sbjct: 228 RTRNHAHALKMYKEMFKANSKPNVNTYTTLIHSLARTGKVNAANTMFMGLPSLGINPSAV 287

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDG 272
            Y I+++ F+  +    A +L   MR DG
Sbjct: 288 TYTIMIQAFLRAKAAGRALALHEAMRSDG 316



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 88/204 (43%), Gaps = 18/204 (8%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           GY H++Y    ++ +  R  + E V+ ++A++   G  +   T  L++ +Y  +K     
Sbjct: 4   GYQHNMYTYTALIDLYGRAKNYEAVEEVLAEMCEVGCDVSIVTFSLVMRWYREAKNLAGI 63

Query: 461 LKAF-HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
            +   H  R  C P        +Y++ +  L K     +A+ V +EM  S   P++ T++
Sbjct: 64  RRVLEHMQREGCLPNE-----YIYTTFIDALDKDTCHEEALAVFKEMRDSNWEPNIFTYN 118

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA------------YCKYLSNS 567
            L++  A  G     +++F  + +    P+   + +L+ A            + K +  +
Sbjct: 119 VLIHSLATAGKLDGAREMFGRLPEPHHRPNFVTYTILVTAHVKAGELEKAVHFLKTMMEA 178

Query: 568 NLMPDAATKELLKKSLWKEGRRKE 591
             MP    + +L  +L  +GR  E
Sbjct: 179 GFMPSHGLRSILFTALMAKGRADE 202



 Score = 42.4 bits (98), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 41/80 (51%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS L+  L++ +    A+ + +EM  +   P+V T++ L++  A  G       +F  + 
Sbjct: 219 YSMLIDLLSRTRNHAHALKMYKEMFKANSKPNVNTYTTLIHSLARTGKVNAANTMFMGLP 278

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
             G+ P A  + ++IQA+ +
Sbjct: 279 SLGINPSAVTYTIMIQAFLR 298


>gi|356575482|ref|XP_003555869.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Glycine max]
          Length = 576

 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 105/225 (46%), Gaps = 32/225 (14%)

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY-------GISK 455
           T D YAL  ++      G +E  + + A++R+ G  LP S +  + + Y       G S 
Sbjct: 189 TEDTYAL--LIKAYCISGLLEKAEAVFAEMRNYG--LPSSAV--VYNAYINGLMKGGNSD 242

Query: 456 KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
           KA+   K    D   C P ++      Y+ L+    K  + F A+ +  EM+     P++
Sbjct: 243 KAEEIFKRMKKDA--CKPTTE-----TYTMLINLYGKAGKSFMALKLFHEMMSHDCKPNI 295

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------Y 563
            T++ L+  FA +G  +  +++F  +++ G+EPD Y +  L++AY +             
Sbjct: 296 CTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSL 355

Query: 564 LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
           + +    PD A+  +L  +  K G + +A AV +  +++   P++
Sbjct: 356 MQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKDMKRVGITPTM 400



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 110/515 (21%), Positives = 191/515 (37%), Gaps = 54/515 (10%)

Query: 41  QLIDSIRLAVRSNSS-NSLSSLLN--DRLLDPFIVTHALRSAPNADSALSIMEALKSNPN 97
           Q++D +   V S S   SL  L    D   D F V   LR     DS +SI   +    +
Sbjct: 91  QILDYVEKGVESESIWGSLDMLPPTLDAWDDIFTVAVQLRMRKQWDSIISICRWILLRSS 150

Query: 98  FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVL 157
           F  +    + L     +     E ++    +  ++ +     +  L++ Y  SG LE   
Sbjct: 151 FKPDVICYNLLIEAFGQKLLYKEAESTYLQLLEARCIPTEDTYALLIKAYCISGLLEKAE 210

Query: 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217
           + + E R      S   YN  ++   K G + +A E F+++  +   P + TYT++I   
Sbjct: 211 AVFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKPTTETYTMLINLY 270

Query: 218 VNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG- 276
              GK   AL++F  +     K     Y  LV  F      ++A+ +  +M++ G  P  
Sbjct: 271 GKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDV 330

Query: 277 RAMRVALERMQEMGFIQGANEFLREML-----PDKRIKNV---RYYEDGSDDDEDENDDN 328
            A    +E     G+  GA E    M      PD+   N+    Y + G  DD +    +
Sbjct: 331 YAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKD 390

Query: 329 NSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPET 388
              V I   ++                    +V L A +K     +            E 
Sbjct: 391 MKRVGITPTMK------------------SHMVLLSAYSKMGSVNKC-----------EE 421

Query: 389 AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII 448
             +  C    + G   D Y L  ML +  R G    ++ ++  +         ST  ++I
Sbjct: 422 ILNQMC----KSGLKLDTYVLNSMLNLYGRLGQFGKMEEVLRVMEKGSYVADISTYNILI 477

Query: 449 DFYGISKKADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMI 507
           + YG      A      +D     P    K  ++ ++S +   +K K     + + EEMI
Sbjct: 478 NRYG-----QAGFIERMEDLFQLLPSKGLKPDVVTWTSRIGAYSKKKLYLKCLEIFEEMI 532

Query: 508 FSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
             G  PD  T   L+   A   +E   +++ +++R
Sbjct: 533 DDGCYPDGGTAKVLL---AACSNEDQTEQVTTVIR 564



 Score = 40.8 bits (94), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 93/240 (38%), Gaps = 43/240 (17%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           + G   DVYA   ++   +R G+      + + ++  G     ++  +++D YG +   D
Sbjct: 323 EAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQD 382

Query: 459 AALKAFHD-DRTLCGPISKFKLMLLYS-SLLRTLTKC------------KRDFDAIN--- 501
            A   F D  R    P  K  ++LL + S + ++ KC            K D   +N   
Sbjct: 383 DAEAVFKDMKRVGITPTMKSHMVLLSAYSKMGSVNKCEEILNQMCKSGLKLDTYVLNSML 442

Query: 502 --------------VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE 547
                         VL  M     V D+ T++ L+  +   G  + ++ LF ++   G++
Sbjct: 443 NLYGRLGQFGKMEEVLRVMEKGSYVADISTYNILINRYGQAGFIERMEDLFQLLPSKGLK 502

Query: 548 PDAYMFKVLIQAYCK---YLS---------NSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
           PD   +   I AY K   YL          +    PD  T ++L  +   E + ++   V
Sbjct: 503 PDVVTWTSRIGAYSKKKLYLKCLEIFEEMIDDGCYPDGGTAKVLLAACSNEDQTEQVTTV 562


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 105/510 (20%), Positives = 200/510 (39%), Gaps = 61/510 (11%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T   L       +R+ E K ++ ++         + +  L+  +   GD+E      +E 
Sbjct: 278 TYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEM 337

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
                  +   +N +++   K GK  +A+E  ++++++G  P+S+TY+++IE       +
Sbjct: 338 VACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNM 397

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-------- 275
             A E+   +   ++  T   Y +++ G           ++L EM  +G  P        
Sbjct: 398 ARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTL 457

Query: 276 -------GRA--MRVALERMQEMGFI-------------------QGANEFLREMLPDKR 307
                  GR    R+ LERM+E G +                   + A  +L EML  + 
Sbjct: 458 MTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRL 517

Query: 308 IKNVRYYE---DG-SDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSL 363
             N   Y    DG S   E E  D      ++ GV     +    +     E +  V   
Sbjct: 518 RPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGN--VTEA 575

Query: 364 LADAKFVWTTRLV-----CKVLRHFKSPETAWH--FFCWVAYQ-PGYTHDVYALEKMLTI 415
            +  +F+ + R++       VL H  S     H  F  +   Q  G   + +    +++ 
Sbjct: 576 FSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISG 635

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA-LKAFHDDRTLCGPI 474
             + G+V+   +L+ ++   G+     T  ++ID  G+ K  +    K   DD    G  
Sbjct: 636 SCKQGNVDKASQLLEEMCIKGINPDIVTYNILID--GLCKAGEIERAKNLFDDIEGRGLT 693

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
                 + Y++++    K K    A  +LEEM+  G+ PD   ++ ++ +F  + +EK  
Sbjct: 694 PN---CVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYN-VILNFCCK-EEKFE 748

Query: 535 QK--LFSMVRQNGVEPDAYMFKVLIQAYCK 562
           +   LF  + + G       F  LI+ YCK
Sbjct: 749 KALDLFQEMLEKGF-ASTVSFNTLIEGYCK 777



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 53/107 (49%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           ST S+N ++  Y K+GK  EA     ++I++  IPN  TYT +I+H    G +  A  ++
Sbjct: 764 STVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLW 823

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR 277
             +    +  T+K Y  L+ G+  +    E  +L  EM   G  P +
Sbjct: 824 LEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDK 870



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/437 (18%), Positives = 172/437 (39%), Gaps = 49/437 (11%)

Query: 190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV 249
           EA+E  R ++D+G +P+  TY ++I       +   A  +   +  + +K     Y  L+
Sbjct: 259 EAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALI 318

Query: 250 EGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRI 308
           +GF+     ++A  + +EM   G      +    L  + + G ++ A E ++EM+     
Sbjct: 319 DGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMM----- 373

Query: 309 KNVRYYEDGSDDDEDEN----DDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLL 364
                 E G + D        + +  G  +A   +L   +  + LA T+  +S  +  L 
Sbjct: 374 ------EKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLC 427

Query: 365 ADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAY-----------------QPGYTHDVY 407
                  T  ++ +++ +   P    +     A+                 + G   DV+
Sbjct: 428 RCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVF 487

Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDD 467
               ++    +   +E     + ++    +R    T    ID Y  + + + A + F++ 
Sbjct: 488 CYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEM 547

Query: 468 RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
            + CG +    +   Y++L+    K     +A +V   ++   ++ DVQT+S L++  + 
Sbjct: 548 LS-CGVLPNVGI---YTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSR 603

Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAAT 575
            G       +FS +++ G+ P+A+ +  LI   CK             +    + PD  T
Sbjct: 604 NGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVT 663

Query: 576 KELLKKSLWKEGRRKEA 592
             +L   L K G  + A
Sbjct: 664 YNILIDGLCKAGEIERA 680



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/247 (21%), Positives = 100/247 (40%), Gaps = 7/247 (2%)

Query: 62  LNDRLLDPFIVTHA-----LRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQ 116
           +  R L P ++T++     L    N     +I+  +  N     N      L T  AK  
Sbjct: 407 MKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMN-GLKPNAVVYTTLMTAHAKEG 465

Query: 117 RNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYN 176
           R  E + ++  +     L     + +L+  +  +  +E   +   E  +R    +  +Y 
Sbjct: 466 RVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYG 525

Query: 177 IVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM 236
             +  Y+K G+   A   F +++  G +PN   YT +IE     G +  A  VF  +   
Sbjct: 526 AFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSR 585

Query: 237 RIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGA 295
           R+ +  + Y +L+ G     +  EA  + +E+++ G  P      +L     + G +  A
Sbjct: 586 RVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKA 645

Query: 296 NEFLREM 302
           ++ L EM
Sbjct: 646 SQLLEEM 652



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/207 (20%), Positives = 83/207 (40%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T   L   L+++ + HE   +  ++     L  +  + +L+      G+++       E 
Sbjct: 593 TYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEM 652

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
             +       +YNI++    K G+   A   F  +   G  PN  TY  M++        
Sbjct: 653 CIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNP 712

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
            +A ++   + L  +   +  Y +++      E+F++A  L  EM + G     +    +
Sbjct: 713 TAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLI 772

Query: 284 ERMQEMGFIQGANEFLREMLPDKRIKN 310
           E   + G +Q AN  L EM+  + I N
Sbjct: 773 EGYCKSGKLQEANHLLEEMIEKQFIPN 799



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 102/225 (45%), Gaps = 33/225 (14%)

Query: 402 YTHDV----YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA 457
           YT+D+    + +EK     +R   + L++ +   L+ + +     T   +ID  G  ++ 
Sbjct: 277 YTYDILINGFCMEKR----SREAKLMLLEMIDVGLKPEPI-----TYNALID--GFMRQG 325

Query: 458 DAALKAFH--DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
           D   +AF   D+   CG  +    ++++++LL  + K  +   A+ +++EM+  G+ PD 
Sbjct: 326 DIE-QAFRIKDEMVACGIEAN---LIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDS 381

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY--LSNSN----- 568
           QT+S L+       +     +L   +++  + P    + V+I   C+   L  +N     
Sbjct: 382 QTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILRE 441

Query: 569 -----LMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
                L P+A     L  +  KEGR +E+  + ER  +   +P +
Sbjct: 442 MVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDV 486



 Score = 43.5 bits (101), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 63/307 (20%), Positives = 122/307 (39%), Gaps = 26/307 (8%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALR-----SAPNADSALSIMEA--LKS 94
           LID +  A     + +L   +  R L P  VT+A        + N  +A  ++E   L+ 
Sbjct: 667 LIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRG 726

Query: 95  NP--NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD 152
            P   F +N      +     K ++  +   L  ++    F + +V+F  L++ Y  SG 
Sbjct: 727 VPPDAFIYN-----VILNFCCKEEKFEKALDLFQEMLEKGFAS-TVSFNTLIEGYCKSGK 780

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
           L+       E  ++  + +  +Y  ++    K G   EA   + ++ +   +P ++TYT 
Sbjct: 781 LQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTS 840

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           ++    N+G +     +F  +    I+     Y ++++ +       EA  L +E+   G
Sbjct: 841 LLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKG 900

Query: 273 KFPGRAMRVAL-------ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDED-- 323
                  R+ L          Q  G +  A E LR M+    + N     D  D +++  
Sbjct: 901 MPMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDGNQNGA 960

Query: 324 --ENDDN 328
             E+ DN
Sbjct: 961 NSEDSDN 967



 Score = 43.1 bits (100), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 5/109 (4%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+SL+    K     +A  +  EM    ++P  +T++ L++ +   G+   V  LF  + 
Sbjct: 803 YTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMV 862

Query: 543 QNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKE--LLKKSLWKEGRR 589
             G+EPD   + V+I AYC+     N+M     K+  L+K    K G R
Sbjct: 863 AKGIEPDKMTYYVMIDAYCR---EGNVMEACKLKDEILVKGMPMKSGFR 908


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 83/435 (19%), Positives = 171/435 (39%), Gaps = 46/435 (10%)

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           ++YN ++  Y  TG+  E V    ++   G  P+  TY++++++L   GK   A ++F  
Sbjct: 340 QTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYC 399

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGF 291
           +    IK     Y IL+ G+       +   LL+ M  +G  P   +  + L    +   
Sbjct: 400 MIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAM 459

Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALAN 351
           I  A      M            + G   D            + YG+ +        + +
Sbjct: 460 IDEAMHIFSRM-----------SQHGLSPDV-----------VTYGILIDALCKLGRVDD 497

Query: 352 TLDEWSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYAL 409
            + +++  +   +     V+ + +  +C V R  K+ E  +       +  G   +V   
Sbjct: 498 AVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEM-----WDQGVRPNVVFF 552

Query: 410 EKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRT 469
             ++  L   G V +  RLI  +   G+R    +   +I  + ++ + D A +       
Sbjct: 553 NTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLD---- 608

Query: 470 LCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
           +   +     ++ Y +LLR   K  R  +A  +  EM+  G+ P   T+S ++       
Sbjct: 609 VMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTR 668

Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKE 577
                ++L+  + ++G + D Y + +++   CK             L + +L P+  T  
Sbjct: 669 RFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFT 728

Query: 578 LLKKSLWKEGRRKEA 592
           ++   L+K GR+K+A
Sbjct: 729 IMIDVLFKGGRKKDA 743



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 55/112 (49%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YNI+++   KT    EA + F+ +  +   PN  T+T+MI+ L   G+   A+++F+++
Sbjct: 691 TYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASI 750

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER 285
           P   +      Y I+++  +     DE  +L   M   G  P   M  A+ R
Sbjct: 751 PSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNAIIR 802



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 87/431 (20%), Positives = 160/431 (37%), Gaps = 85/431 (19%)

Query: 148 STSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK---TGKNFEAVETFRQV---IDE 201
           S S  ++  L  ++E    A+  S  ++N +++V A+   +  +  AV  F ++      
Sbjct: 25  SGSLGIDDALKLFDELLPHARPASVRAFNHLLNVVARARCSSTSELAVSLFNRMARACSN 84

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
              P+  TY+++      LG+++     F               LIL  G+    R +E 
Sbjct: 85  KVRPDLCTYSILTGCFCRLGRIEHGFAAFG--------------LILKTGW----RVNEV 126

Query: 262 --KSLLNEMRDDGKFPGRAMRVALERMQEMGF---IQGANEFLREMLPDKRIKNVRYYED 316
               LLN + D  K    AM + L RM E G    +   N  L+ +  +KR++       
Sbjct: 127 VINQLLNGLCD-AKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLH 185

Query: 317 GSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLV 376
              +D   N   N        V     +D    A  +D                      
Sbjct: 186 TMAEDGGGNCTPNV-------VTYNTIIDGLCKAQAVDRAE------------------- 219

Query: 377 CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
             VL+H                  G   DV     ++  L +   V+  + ++  +   G
Sbjct: 220 -GVLQHM--------------IDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKG 264

Query: 437 MRLPFSTIRLIIDFYGISK-----KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLT 491
           ++    T   IID  G+ K     +A+  L+   D       ++       Y++++  L 
Sbjct: 265 VKPDVVTYNTIID--GLCKAQAVDRAEGVLQHMIDKGVKPDVVT-------YNTIIDGLC 315

Query: 492 KCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAY 551
           K +    A  VL+ MI   + PD+QT++ L++ +   G+ K V +    +   G++PD  
Sbjct: 316 KAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVV 375

Query: 552 MFKVLIQAYCK 562
            + +L+   CK
Sbjct: 376 TYSLLLDYLCK 386



 Score = 42.7 bits (99), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 20/125 (16%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS----GLMYHFALQGDEKIVQKLF 538
           YS+++  L K +    A  VL+ MI  G+ PDV T++    GL    A+   E ++Q + 
Sbjct: 237 YSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMI 296

Query: 539 SMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKE 586
                 GV+PD   +  +I   CK            ++ + ++ PD  T   L       
Sbjct: 297 ----DKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLST 352

Query: 587 GRRKE 591
           G  KE
Sbjct: 353 GEWKE 357



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 76/175 (43%), Gaps = 16/175 (9%)

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR 495
           G +    T  +I++    +   D A K F   ++LC    +  + + ++ ++  L K  R
Sbjct: 684 GQQWDIYTYNIILNGLCKTNCVDEAFKIF---QSLCSKDLRPNI-ITFTIMIDVLFKGGR 739

Query: 496 DFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV 555
             DA+++   +   G+VP+V T+  +M +   +G       LF  + ++G  PD+ M   
Sbjct: 740 KKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNA 799

Query: 556 LIQ------------AYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
           +I+            AY   +   N   +A+T  LL     +E  +  A ++ E+
Sbjct: 800 IIRSLLGRGEIMRAGAYLSKIDEMNFSLEASTTSLLISLFSREEYKNHAKSLPEK 854


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 86/411 (20%), Positives = 154/411 (37%), Gaps = 72/411 (17%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN V+  + K G   +A + F++++  G  P+  TY  ++  L     +D A      +
Sbjct: 234 AYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQM 293

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA-MRVALERMQEMGFI 292
              R+   +  Y  L+ G+    ++ EA  +  EMR     P    + + +  + + G I
Sbjct: 294 VNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKI 353

Query: 293 QGANEFLREML-----PDKRIKNVR---YYEDGSDDDEDENDDNNSGVRIA-----YGVQ 339
           + A +    M      PD    N+    Y   G   D  +  D   G  IA     + V 
Sbjct: 354 KEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVL 413

Query: 340 LKPWLDPKALANTLDEWS--------PEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWH 391
           +K + +   L   +  ++        P+VV          T R V   L      + A  
Sbjct: 414 IKAYANCGMLDKAMIIFNEMRDHGVKPDVV----------TYRTVIAALCRIGKMDDAME 463

Query: 392 FFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY 451
            F  +  Q G   D YA   ++     HG +     LI+++ ++GM L            
Sbjct: 464 KFNQMIDQ-GVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLD----------- 511

Query: 452 GISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
                                       ++ +SS++  L K  R  DA N+ +  +  G+
Sbjct: 512 ----------------------------IVFFSSIINNLCKLGRVMDAQNIFDLTVNVGL 543

Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            PD   +S LM  + L G  +   ++F  +   G+EP+  ++  L+  YCK
Sbjct: 544 HPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCK 594



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 109/544 (20%), Positives = 208/544 (38%), Gaps = 70/544 (12%)

Query: 96  PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLEL 155
           P+     S +HAL    A  +    L+ ++    + + L  +  + NL+  YS++G  + 
Sbjct: 265 PDLVTYNSVVHALCKARAMDKAEAFLRQMV----NKRVLPNNWTYNNLIYGYSSTGQWKE 320

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
            +  + E R+ + L    + +++M    K GK  EA + F  +  +G  P+  +Y +M+ 
Sbjct: 321 AVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLN 380

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                G L    ++F  +    I      + +L++ +      D+A  + NEMRD G  P
Sbjct: 381 GYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKP 440

Query: 276 GRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRI 334
                R  +  +  +G +  A E   +M+ D+ +   +Y                     
Sbjct: 441 DVVTYRTVIAALCRIGKMDDAMEKFNQMI-DQGVAPDKY--------------------- 478

Query: 335 AYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLV---CKVLRHFKSPETAWH 391
           AY   ++ +    +L     E   E+++       V+ + ++   CK+ R   + +  + 
Sbjct: 479 AYNCLIQGFCTHGSLLKA-KELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDA-QNIFD 536

Query: 392 FFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY 451
               V   P    D      ++      G +E   R+   + S G+         +++ Y
Sbjct: 537 LTVNVGLHP----DAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGY 592

Query: 452 GISKKADAALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS 509
               + D  L  F +   R +  P +     +LYS ++  L +  R   A     EM  S
Sbjct: 593 CKIGRIDEGLSLFREMLQRGI-KPST-----ILYSIIIDGLFQAGRTVPAKMKFHEMTES 646

Query: 510 GIVPDVQTFSGLMYHFALQG-------DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           GI  D+ T     Y+  L+G       DE I   LF  +R   V+ +      +I    +
Sbjct: 647 GIAMDICT-----YNIVLRGLFKNRCFDEAIF--LFKELRAMNVKINIITLNTMIDGMFQ 699

Query: 563 Y------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLAL 610
                        +S S L+P+  T  ++  +L KEG  +EA  +    +     P+  L
Sbjct: 700 TRRVEEAKDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRL 759

Query: 611 RGHI 614
             H+
Sbjct: 760 LNHV 763



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 82/207 (39%), Gaps = 19/207 (9%)

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALK 462
           T   YA+  ++    R    EL      +L   G+R+       +++ +  +K+ D AL 
Sbjct: 123 TSHTYAI--LMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALD 180

Query: 463 AFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV--PDVQTFSG 520
                    G +     +  YS LL++L    +   A ++L  M   G V  P+V  ++ 
Sbjct: 181 ILLHRTPELGCVPD---VFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNT 237

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSN 568
           ++  F  +GD      LF  + Q G+ PD   +  ++ A CK             + N  
Sbjct: 238 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKR 297

Query: 569 LMPDAATKELLKKSLWKEGRRKEAAAV 595
           ++P+  T   L       G+ KEA  V
Sbjct: 298 VLPNNWTYNNLIYGYSSTGQWKEAVRV 324



 Score = 40.8 bits (94), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 23/156 (14%)

Query: 452 GISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
           G S +AD  L+   +   +C P      ++ Y++++    K      A ++ +EM+  GI
Sbjct: 209 GKSGQADDLLRMMAEGGAVCSPN-----VVAYNTVIDGFFKEGDVNKACDLFKEMVQRGI 263

Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ---NGVEPDAYMFKVLIQAYC------- 561
            PD+ T++ +++        + + K  + +RQ     V P+ + +  LI  Y        
Sbjct: 264 PPDLVTYNSVVHALC---KARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKE 320

Query: 562 -----KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                K +   +++PD  T  +L  SL K G+ KEA
Sbjct: 321 AVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEA 356


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 88/202 (43%), Gaps = 7/202 (3%)

Query: 74  HALRSAPNADSALSI---MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           H L  A     A+S+   M+A    P+     + +H L      + R  E +TL+ D  +
Sbjct: 150 HGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLC----GAGRTREAETLLSDAMA 205

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
             F    V +  L+  Y   GDLEL +  +          +  +Y  ++S + K+ K   
Sbjct: 206 EGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDR 265

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A+  F +++D G +PN  TYT +I+   + G+LD A  +  ++    +        +L++
Sbjct: 266 AMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLID 325

Query: 251 GFVGVERFDEAKSLLNEMRDDG 272
                ER  EA+ LL  +   G
Sbjct: 326 ALCKHERVGEAQLLLGSLIQKG 347



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 84/420 (20%), Positives = 154/420 (36%), Gaps = 43/420 (10%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           Y  ++      G+  EA       + EG  PN   Y  +I+   N+G L+ A++VF  + 
Sbjct: 180 YATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMD 239

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQ-EMGFIQ 293
           +       + Y  L+ GF    + D A  L + M D G  P      AL + Q   G + 
Sbjct: 240 VNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLD 299

Query: 294 GANEFLREMLPDKRIKN---VRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALA 350
            A   L+ M     + N        D     E          R+     L   L  K + 
Sbjct: 300 CAYRLLQSMENSGLVPNEWTCSVLIDALCKHE----------RVGEAQLLLGSLIQKGIK 349

Query: 351 NTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
                ++  +  L    +F    RL+  ++                    G+  D +   
Sbjct: 350 VNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQ------------------GFVPDAHTYS 391

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470
            ++  L R   +     ++  +   G++    T  +IID       AD + K    D+ +
Sbjct: 392 SLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKIL--DKMI 449

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
              I     +  Y+  +R+     R  DA +++  M+  G+ P++ T++ L+  +A  G 
Sbjct: 450 AAGIKPD--VFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGL 507

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRK 590
                  F  +  NG +P+   + VL++   K  S++N+  ++        S+WK    K
Sbjct: 508 TSQAFSTFKHMVANGCKPNEESYTVLLRLLIKKESSNNIPANSV-------SIWKIAEMK 560



 Score = 46.6 bits (109), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 48/120 (40%)

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
           +L+    +  R    +  +Y  +++ Y   G    +      ++  G  P+S  YT  + 
Sbjct: 56  MLADMESFASRMPARNLRTYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVV 115

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                G L  A  +F  +PL    RT+  Y  L+ G  G     EA S+   M+ DG  P
Sbjct: 116 GYCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAP 175



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 6/164 (3%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D +    M+  L   G     + L++   ++G          +ID Y      + A
Sbjct: 172 GCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELA 231

Query: 461 LKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           +  F   D   C P  +      Y+ L+    K ++   A+ +   M+ +G+VP+V T++
Sbjct: 232 VDVFERMDVNGCSPNVR-----TYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYT 286

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY 563
            L+      G      +L   +  +G+ P+ +   VLI A CK+
Sbjct: 287 ALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKH 330



 Score = 42.4 bits (98), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 12/124 (9%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           ++Y+SL+  L K  R   A  +++ ++  G VPD  T+S L+     Q +      +   
Sbjct: 353 IVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDD 412

Query: 541 VRQNGVEPDAYMFKVLIQAYCKYLS------------NSNLMPDAATKELLKKSLWKEGR 588
           + + GV+P    + ++I    + +              + + PD  T  +  +S   EGR
Sbjct: 413 MMEKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGR 472

Query: 589 RKEA 592
            ++A
Sbjct: 473 MEDA 476



 Score = 40.8 bits (94), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 16/118 (13%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN-------------- 219
           +YN ++  YA  G   +A  TF+ ++  G  PN  +YTV++  L+               
Sbjct: 494 TYNALICGYANLGLTSQAFSTFKHMVANGCKPNEESYTVLLRLLIKKESSNNIPANSVSI 553

Query: 220 --LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             + ++     +   +  +++      Y   +     V+R DEAK LL EM+     P
Sbjct: 554 WKIAEMKYLHGLLEEMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTP 611


>gi|297789717|ref|XP_002862796.1| hypothetical protein ARALYDRAFT_359368 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297308523|gb|EFH39054.1| hypothetical protein ARALYDRAFT_359368 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 378

 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 1/157 (0%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           F  L++ ++  G ++  LS  +E +  +       YN+ +  + K GK   A + F ++ 
Sbjct: 220 FTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIE 279

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
             G  P+  TYT MI  L    +LD A+E+F  L   R    +  Y  ++ G+    +FD
Sbjct: 280 ANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFD 339

Query: 260 EAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGA 295
           EA SLL   R  G  P   A    L  +++MG +  A
Sbjct: 340 EAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEA 376



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 61/305 (20%), Positives = 114/305 (37%), Gaps = 45/305 (14%)

Query: 349 LANTLD--EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDV 406
           + N L+   W     + L+   F      V  VLR  K    A  +F W   +    H  
Sbjct: 53  ICNVLETGAWGSSAENALSALFFKPQPEFVIGVLRRLKDVNRAIEYFRWYERRTELPHCP 112

Query: 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFST-IRLIIDFYGISKKADA------ 459
            +   +L ++AR  + + +D+++ ++   G     +T I +++     +K  +       
Sbjct: 113 ESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLSCVKANKLREGFDVVQN 172

Query: 460 -----ALKAFHDDRTLCGPISKFK---LML----------------LYSSLLRTLTKCKR 495
                   AF    TL G  S      +ML                L+++L+R   K  R
Sbjct: 173 MRKFKFRPAFSAYTTLIGAFSAVNHSDMMLALFQQMQELGYEPTVHLFTTLIRGFAKEGR 232

Query: 496 DFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV 555
              A+++L+EM  S +  D+  ++  +  F   G   +  K F  +  NG++PD   +  
Sbjct: 233 VDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTS 292

Query: 556 LIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIN 603
           +I   CK            +L  +  +P       +       G+  EA ++ ER     
Sbjct: 293 MIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKG 352

Query: 604 DVPSL 608
            +PS+
Sbjct: 353 SIPSV 357



 Score = 42.7 bits (99), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 47/236 (19%), Positives = 96/236 (40%), Gaps = 26/236 (11%)

Query: 52  SNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATV 111
           S++ N+LS+L       P  V   LR   + + A+      +      H   + ++L  V
Sbjct: 64  SSAENALSALFFKP--QPEFVIGVLRRLKDVNRAIEYFRWYERRTELPHCPESYNSLLLV 121

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLST--WNEYRQRAKL 169
           +A+ +    L  ++G++S + F   SVN             +E+VLS    N+ R+   +
Sbjct: 122 MARCRNFDALDQILGEMSVAGF-GPSVNTC-----------IEMVLSCVKANKLREGFDV 169

Query: 170 LST----------ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219
           +             +Y  ++  ++    +   +  F+Q+ + G  P    +T +I     
Sbjct: 170 VQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLALFQQMQELGYEPTVHLFTTLIRGFAK 229

Query: 220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            G++DSAL +   +    +      Y + ++ F  V + D A    +E+  +G  P
Sbjct: 230 EGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKP 285


>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
 gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 105/505 (20%), Positives = 200/505 (39%), Gaps = 56/505 (11%)

Query: 87  SIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQW 146
            + E +K N     ++ T + L T   +   + E   +  D+ S  F+   V +  L+  
Sbjct: 90  GLFEGMK-NAGVLPDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLDV 148

Query: 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206
           Y  S   +  +    E        S  +YN ++S YA+ G   EA+E   Q+++ G   +
Sbjct: 149 YGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLD 208

Query: 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
             TYT ++   V  GK +SA+ VF+ +     K     +  L++      +F E   +  
Sbjct: 209 VFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFE 268

Query: 267 EMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM-----LPDKRIKNV---RYYEDG 317
           E+++    P        L    + G     +   +EM     +P++   N     Y   G
Sbjct: 269 EIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCG 328

Query: 318 SDDDEDENDDNNSGVRIAYGVQLKPWLDP---------KALA-NTLDEWSPEVVSLLADA 367
           S D   +           Y   L+  + P          ALA   L E S ++ + + D 
Sbjct: 329 SFDQAMD----------IYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDG 378

Query: 368 KFVWTTRLVCKVLRHFKSPETAWHFF------CWVAYQPGYTHDVYALEKMLTILARHGH 421
           +        C +L  + + +            C    +P   H V  L K L ++     
Sbjct: 379 RCKPNELTYCSLLHAYANGKEIGRMLALAEEICSGVIEP---HAV--LLKTLVLVNSKCD 433

Query: 422 VELVDRLIA--KLRSDGMRLPFSTIRLIIDFYG---ISKKADAALKAFHDDRTLCGPISK 476
           + LV+  +A  +L+  G     ST+  ++  YG   +  K +  L   ++        S 
Sbjct: 434 L-LVEAEVAFLELKRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNE--------SG 484

Query: 477 FKLML-LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ 535
           F   L  Y+SL+   ++ +    +  VL+E++  GI PD  +++ +++ +   G  K   
Sbjct: 485 FTPSLATYNSLMYMHSRSENFERSEEVLKEILAKGIKPDTISYNTVIFAYCRNGRMKEAS 544

Query: 536 KLFSMVRQNGVEPDAYMFKVLIQAY 560
           ++FS +R++G+ PD   +   + +Y
Sbjct: 545 RIFSEMRESGLVPDVITYNTFVASY 569



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 74/174 (42%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
            FS + STL+A+ ++  + Q   +   ++  ++ S F      + +LM  +S S + E  
Sbjct: 449 GFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSENFERS 508

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
                E   +     T SYN V+  Y + G+  EA   F ++ + G +P+  TY   +  
Sbjct: 509 EEVLKEILAKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVAS 568

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
                  + A++V   +     K     Y  +V+G+      D+A   ++ + +
Sbjct: 569 YAADSMFEDAIDVVRYMIKHGCKPNQNTYNSVVDGYCKHNHRDDAIMFISSLHE 622



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 50/234 (21%), Positives = 103/234 (44%), Gaps = 25/234 (10%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G +  +     +++  AR G ++    L  ++   G+ L   T   ++  +  + K ++A
Sbjct: 169 GCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESA 228

Query: 461 LKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           ++ F + R   C P      +  +++L++      +  + + V EE+  S  VPD+ T++
Sbjct: 229 MRVFAEMRAAGCKPN-----ICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWN 283

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY--C----------KYLSNS 567
            L+  F   G +  V  +F  +++ G  P+   +  LI AY  C          K +  +
Sbjct: 284 TLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEA 343

Query: 568 NLMPDAAT-----KELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWA 616
            + PD +T       L +  LW++  +  A   + RC K N++   +L  H +A
Sbjct: 344 GITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRC-KPNELTYCSLL-HAYA 395



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 42/208 (20%), Positives = 90/208 (43%), Gaps = 10/208 (4%)

Query: 67  LDPFIVTHALRS---APNADSALSI---MEALKSNPNFSHNQSTLHALATVLAKSQRNHE 120
           LD F  T  L     A   +SA+ +   M A    PN      T +AL  +     +  E
Sbjct: 207 LDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNIC----TFNALIKMHGNRGKFAE 262

Query: 121 LKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS 180
           +  +  +I +S  +   V +  L+  +  +G    V   + E ++   +   ++YN ++S
Sbjct: 263 MMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLIS 322

Query: 181 VYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR 240
            Y++ G   +A++ ++++++ G  P+  TY  ++  L   G  + + ++F+ +   R K 
Sbjct: 323 AYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKP 382

Query: 241 TSKQYLILVEGFVGVERFDEAKSLLNEM 268
               Y  L+  +   +      +L  E+
Sbjct: 383 NELTYCSLLHAYANGKEIGRMLALAEEI 410



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 9/168 (5%)

Query: 398 YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA 457
           ++ G+  DVYA   ++T    +G       +  K+  +G +    T  +I++ YG     
Sbjct: 25  HKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMP 84

Query: 458 DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDF---DAINVLEEMIFSGIVPD 514
              +K   +     G +        Y++L+   T C+R     +A  V ++M   G VPD
Sbjct: 85  WNKIKGLFEGMKNAGVLPD---EYTYNTLI---TCCRRGSLHEEAAAVFKDMKSMGFVPD 138

Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
             T++ L+  +      K   ++   +  NG  P    +  LI AY +
Sbjct: 139 KVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYAR 186


>gi|449463418|ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
 gi|449499065|ref|XP_004160711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 439

 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 109/242 (45%), Gaps = 38/242 (15%)

Query: 67  LDPFIVTHALRSAPNADS-ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           + P I    LR   NA   A    E      N+ H+    H++   LAK ++   +  L+
Sbjct: 20  ISPEIAEPVLRRFENAGMLAYRFFEWASKQRNYVHSVRAYHSMIESLAKIRQYQMVWDLV 79

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWN---EYRQRAK------LLS----- 171
             + + + LNV   F  +M+ Y+ +  +E  + T+N   +Y  +        LLS     
Sbjct: 80  NAMRNKEILNVEA-FCIIMRKYARAQKVEEAVYTFNVMEKYNMKPNVAAFNGLLSALCKS 138

Query: 172 --------------------TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT 211
                               +++Y+I++  + +     +A E +R++ID G IP+  TY+
Sbjct: 139 KNVRKAQEIFDNMKDQFVPDSKTYSILIEGWGRAPNLPKAREIYREMIDSGCIPDEVTYS 198

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE-RFDEAKSLLNEMRD 270
           +M++ L   G++D A+E+   +     K +S  Y +LV  + GVE R ++A S   EM  
Sbjct: 199 IMVDVLCKAGRVDEAVEIVKEMDYNNCKPSSFIYSVLVHTY-GVENRIEDAVSTFLEMER 257

Query: 271 DG 272
           +G
Sbjct: 258 NG 259



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 96/234 (41%), Gaps = 3/234 (1%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+      APN   A  I   +  +     ++ T   +  VL K+ R  E   ++ ++  
Sbjct: 164 ILIEGWGRAPNLPKAREIYREMIDSGCIP-DEVTYSIMVDVLCKAGRVDEAVEIVKEMDY 222

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           +     S  +  L+  Y     +E  +ST+ E  +   +    +YN ++S + K  K   
Sbjct: 223 NNCKPSSFIYSVLVHTYGVENRIEDAVSTFLEMERNGVMADVAAYNALISAFCKANKMKN 282

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
                + +  +G  PNSRT  ++I  L+  G+ D A ++F  + +   +     Y ++++
Sbjct: 283 VYRVLKDMDLKGVNPNSRTCNIIINSLIGRGETDEAFKIFRRM-IKVCEPDVDSYTMIIK 341

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREML 303
            F G +  D A  +   M+     P      V +  + ++G    A   L EM+
Sbjct: 342 MFCGRKELDMALKIWKYMKKKQFVPSMHTFSVLINGLCQIGNATQACVLLEEMI 395



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 86/188 (45%), Gaps = 13/188 (6%)

Query: 379 VLRHFKSPET-AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM 437
           VLR F++    A+ FF W + Q  Y H V A   M+  LA+    ++V  L+  +R+  +
Sbjct: 28  VLRRFENAGMLAYRFFEWASKQRNYVHSVRAYHSMIESLAKIRQYQMVWDLVNAMRNKEI 87

Query: 438 RLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL---MLLYSSLLRTLTKCK 494
            L      +I+  Y  ++K + A+  F+        + K+ +   +  ++ LL  L K K
Sbjct: 88  -LNVEAFCIIMRKYARAQKVEEAVYTFN-------VMEKYNMKPNVAAFNGLLSALCKSK 139

Query: 495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK 554
               A  + + M     VPD +T+S L+  +    +    ++++  +  +G  PD   + 
Sbjct: 140 NVRKAQEIFDNMK-DQFVPDSKTYSILIEGWGRAPNLPKAREIYREMIDSGCIPDEVTYS 198

Query: 555 VLIQAYCK 562
           +++   CK
Sbjct: 199 IMVDVLCK 206



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 3/150 (2%)

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           ++V    N  R + ++L+ E++ I+M  YA+  K  EAV TF  +      PN   +  +
Sbjct: 73  QMVWDLVNAMRNK-EILNVEAFCIIMRKYARAQKVEEAVYTFNVMEKYNMKPNVAAFNGL 131

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           +  L     +  A E+F  +    +   SK Y IL+EG+       +A+ +  EM D G 
Sbjct: 132 LSALCKSKNVRKAQEIFDNMKDQFVP-DSKTYSILIEGWGRAPNLPKAREIYREMIDSGC 190

Query: 274 FPGRAM-RVALERMQEMGFIQGANEFLREM 302
            P      + ++ + + G +  A E ++EM
Sbjct: 191 IPDEVTYSIMVDVLCKAGRVDEAVEIVKEM 220



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 12/132 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS ++  L K  R  +A+ +++EM ++   P    +S L++ + ++   +     F  + 
Sbjct: 197 YSIMVDVLCKAGRVDEAVEIVKEMDYNNCKPSSFIYSVLVHTYGVENRIEDAVSTFLEME 256

Query: 543 QNGVEPDAYMFKVLIQAYCKYLSNSNLM------------PDAATKELLKKSLWKEGRRK 590
           +NGV  D   +  LI A+CK     N+             P++ T  ++  SL   G   
Sbjct: 257 RNGVMADVAAYNALISAFCKANKMKNVYRVLKDMDLKGVNPNSRTCNIIINSLIGRGETD 316

Query: 591 EAAAVEERCEKI 602
           EA  +  R  K+
Sbjct: 317 EAFKIFRRMIKV 328



 Score = 40.0 bits (92), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 43/219 (19%), Positives = 86/219 (39%), Gaps = 6/219 (2%)

Query: 86  LSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQ 145
            ++ME     PN +      + L + L KS +N      I D    +F+  S  +  L++
Sbjct: 113 FNVMEKYNMKPNVA----AFNGLLSALCKS-KNVRKAQEIFDNMKDQFVPDSKTYSILIE 167

Query: 146 WYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP 205
            +  + +L      + E      +    +Y+I++ V  K G+  EAVE  +++      P
Sbjct: 168 GWGRAPNLPKAREIYREMIDSGCIPDEVTYSIMVDVLCKAGRVDEAVEIVKEMDYNNCKP 227

Query: 206 NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL 265
           +S  Y+V++       +++ A+  F  +    +      Y  L+  F    +      +L
Sbjct: 228 SSFIYSVLVHTYGVENRIEDAVSTFLEMERNGVMADVAAYNALISAFCKANKMKNVYRVL 287

Query: 266 NEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREML 303
            +M   G  P  R   + +  +   G    A +  R M+
Sbjct: 288 KDMDLKGVNPNSRTCNIIINSLIGRGETDEAFKIFRRMI 326


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 115/571 (20%), Positives = 226/571 (39%), Gaps = 53/571 (9%)

Query: 58  LSSLLNDRLLDP--FIVTHALRSAPNADSALSIMEALK--SNPNFSHNQSTLHALATVLA 113
           L+ L+ DR+  P   I    +++  N +    + + L   S   F  +  + + L   LA
Sbjct: 115 LNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLA 174

Query: 114 KSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL---ELVLSTWNEYRQRAKLL 170
           K +     + L   + +S      + F  L+   S  G +   EL+LS   +Y     + 
Sbjct: 175 KFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVF 234

Query: 171 STESYNIVMSVYAKTGKNFE-AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           +   Y  ++  + +  +N + A   F +++ EG  PNS TY+ +I  L N G++D AL++
Sbjct: 235 T---YTSLILGHCRN-RNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDM 290

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQE 288
              +    I+ T   Y + +     +E  +EA  L+  M+  G  P      AL   +  
Sbjct: 291 LEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSR 350

Query: 289 MGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPK- 347
           +G ++ A     +ML +  + N   Y    ++          G R +  +++  W++   
Sbjct: 351 LGKLEVAIGLYHKMLKEGLVPNTVTYNALINEL-------CVGGRFSTALKIFHWMEGHG 403

Query: 348 ALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAY--------- 398
           +LANT   ++  +  L           L  K+L+    P    +      Y         
Sbjct: 404 SLANT-QTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNA 462

Query: 399 --------QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF 450
                   + G   D +   ++++  ++ G +E       ++   G+     +   +ID 
Sbjct: 463 ARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDG 522

Query: 451 YGISKKADAALKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS 509
           +    K D AL        + C P  +      Y++++  L+K  R  +A  + ++M+  
Sbjct: 523 HSKDGKVDIALSLLKRMEEMGCNPNVES-----YNAVINGLSKENRFSEAEKICDKMVEQ 577

Query: 510 GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------- 562
           G++P+V T++ L+      G  +   K+F  + +    P+ Y +  LI   C+       
Sbjct: 578 GLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEA 637

Query: 563 -YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
             +S     P   T   L   L ++GR  EA
Sbjct: 638 ERMSEIGCEPTLDTYSTLVSGLCRKGRFYEA 668



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/427 (17%), Positives = 170/427 (39%), Gaps = 40/427 (9%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  L+   S  G LE+ +  +++  +   + +T +YN +++     G+   A++ F  + 
Sbjct: 341 YTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWME 400

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
             G++ N++TY  +I+ L   G ++ A+ +F  +  M    T   Y  L+ G++     +
Sbjct: 401 GHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVN 460

Query: 260 EAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE--- 315
            A  LL+ M+++G  P        +    + G ++ A+ + +EM+      N   Y    
Sbjct: 461 NAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALI 520

Query: 316 DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL 375
           DG   D           ++   + L   ++       ++ ++  +  L  + +F    ++
Sbjct: 521 DGHSKDG----------KVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKI 570

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
             K++                  + G   +V     ++  L R+G  +   ++   +   
Sbjct: 571 CDKMV------------------EQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKR 612

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR 495
                  T   +I  YG+ ++  A      D+      I     +  YS+L+  L +  R
Sbjct: 613 KCLPNLYTYSSLI--YGLCQEGKA------DEAERMSEIGCEPTLDTYSTLVSGLCRKGR 664

Query: 496 DFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV 555
            ++A  ++++M   G  PD + +  L+       +     K+F  +   G +    +++ 
Sbjct: 665 FYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRA 724

Query: 556 LIQAYCK 562
           LI A CK
Sbjct: 725 LICALCK 731



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 125/310 (40%), Gaps = 31/310 (10%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+  Y T G++       +  ++        +YN ++S ++K GK   A   F++
Sbjct: 444 VTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQE 503

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +++ G  PN  +YT +I+     GK+D AL +   +  M      + Y  ++ G     R
Sbjct: 504 MVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENR 563

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYY-- 314
           F EA+ + ++M + G  P       L + +   G  Q A +   +M   K + N+  Y  
Sbjct: 564 FSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSS 623

Query: 315 ------EDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAK 368
                 ++G  D+ +   +          +  +P         TLD +S  V  L    +
Sbjct: 624 LIYGLCQEGKADEAERMSE----------IGCEP---------TLDTYSTLVSGLCRKGR 664

Query: 369 FVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILAR--HGHVELVD 426
           F    +LV  +      P+   ++   +A+      D +AL+   +I A+    H+ +  
Sbjct: 665 FYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVD-HALKIFHSIEAKGFQLHLSIYR 723

Query: 427 RLIAKLRSDG 436
            LI  L   G
Sbjct: 724 ALICALCKAG 733



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 106/244 (43%), Gaps = 42/244 (17%)

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           V +++   K  E+   FF W++ +P Y H++     ML  L R       DR+ A     
Sbjct: 78  VAEIVAVHKDTESVIQFFYWISKRPFYKHNMNCFISMLNRLVR-------DRVFA----- 125

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS--SLLRTLTKC 493
               P   IR+++     +++    +  F ++ +  G    F    LYS  +LL  L K 
Sbjct: 126 ----PADHIRILMIKACRNEEEIRRVADFLNEISGMG----FGFS-LYSCNTLLIQLAKF 176

Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
           +    A N+ ++M+ SGI P + TF+ L+   + +G  +  + + S + Q  + PD + +
Sbjct: 177 EMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTY 236

Query: 554 KVLIQAYCKYLSNSNL---------------MPDAATKELLKKSLWKEGRRKEAA-AVEE 597
             LI  +C+   N NL                P++ T   L   L  EGR  EA   +EE
Sbjct: 237 TSLILGHCR---NRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEE 293

Query: 598 RCEK 601
             EK
Sbjct: 294 MIEK 297



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/220 (20%), Positives = 99/220 (45%), Gaps = 16/220 (7%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   +V     +++ L+R G +E+   L  K+  +G+     T   +I+   +  +   A
Sbjct: 333 GCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTA 392

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           LK FH      G ++  +    Y+ +++ L        A+ + E+M+  G +P V T++ 
Sbjct: 393 LKIFHWMEGH-GSLANTQT---YNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNT 448

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSN 568
           L+  +  +G+     +L  ++++NG EPD + +  L+  + K+            +    
Sbjct: 449 LINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECG 508

Query: 569 LMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
           L P+  +   L     K+G+   A ++ +R E++   P++
Sbjct: 509 LNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNV 548



 Score = 46.2 bits (108), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 91/458 (19%), Positives = 171/458 (37%), Gaps = 38/458 (8%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           SV +  L+      G ++  L    E  ++    +  +Y + ++         EA+E   
Sbjct: 268 SVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVA 327

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           ++   G  PN +TYT +I  L  LGKL+ A+ ++  +    +   +  Y  L+       
Sbjct: 328 RMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGG 387

Query: 257 RFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
           RF  A  + + M   G     +     ++ +   G I+ A     +ML    +  V  Y 
Sbjct: 388 RFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYN 447

Query: 316 DGSDDDEDENDDNNSG----VRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVW 371
              +    + + NN+     +    G +   W     L +   +W       L  A F +
Sbjct: 448 TLINGYLTKGNVNNAARLLDLMKENGCEPDEW-TYNELVSGFSKWGK-----LESASFYF 501

Query: 372 TTRLVCK-----------VLRHFKSPETAWHFFCWVAYQP-GYTHDVYALEKMLTILARH 419
              + C            +  H K  +           +  G   +V +   ++  L++ 
Sbjct: 502 QEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKE 561

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFK 478
                 +++  K+   G+     T   +ID    + +   A K FHD ++  C P     
Sbjct: 562 NRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPN---- 617

Query: 479 LMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF 538
            +  YSSL+  L +  +  +A    E M   G  P + T+S L+     +G     ++L 
Sbjct: 618 -LYTYSSLIYGLCQEGKADEA----ERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLV 672

Query: 539 SMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATK 576
             +++ G  PD  ++  L+ A+CK     NL  D A K
Sbjct: 673 KDMKERGFCPDREIYYSLLIAHCK-----NLEVDHALK 705



 Score = 40.0 bits (92), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 86/211 (40%), Gaps = 24/211 (11%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G    +     ++ IL++ G V   + +++++    +     T   +I  +  ++  D A
Sbjct: 193 GIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLA 252

Query: 461 LKAFHDDRTL---CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
              F  DR +   C P S     + YS+L+  L    R  +A+++LEEMI  GI P V T
Sbjct: 253 FGVF--DRMVKEGCDPNS-----VTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYT 305

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA-------------YCKYL 564
           ++  +        E+   +L + +++ G  P+   +  LI               Y K L
Sbjct: 306 YTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKML 365

Query: 565 SNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
               L+P+  T   L   L   GR   A  +
Sbjct: 366 KEG-LVPNTVTYNALINELCVGGRFSTALKI 395


>gi|356513139|ref|XP_003525271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Glycine max]
          Length = 621

 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 91/425 (21%), Positives = 160/425 (37%), Gaps = 93/425 (21%)

Query: 158 STWNEYRQRAKLLSTESYNIVMSVYAKT---------GKNFEAVETFRQVIDEGAIPNSR 208
           ST  E   ++  L     N   +V+A+T         GK  EA   F  + +EG  P   
Sbjct: 37  STPQERCDQSHCLICRGNNSCQTVHARTKLMNALIGKGKPHEAQAVFHNLTEEGHKPTLI 96

Query: 209 TYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           TYT ++  L    +  S   + S +    +K  S     ++  F    + DEA  +  +M
Sbjct: 97  TYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMINAFSDSGKVDEAMKIFQKM 156

Query: 269 RDDGKFPGRAMRVALERMQEMGFIQGANEFLR--EMLPDKRIKNVRYYEDGSDDDEDEND 326
           ++ G  P  +    L  ++  G +    E ++  EM+             G D++   ND
Sbjct: 157 KEYGCKPTTSTYNTL--IKGFGIVGRPYESMKLLEMM-------------GQDENVKPND 201

Query: 327 DNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSP 386
                    Y + ++ W   K L                                     
Sbjct: 202 R-------TYNILIQAWCTKKKL------------------------------------- 217

Query: 387 ETAW---HFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFST 443
           E AW   H       QP    DV     M    A++G  E  +RLI K++ + ++    T
Sbjct: 218 EEAWNVLHKMVASGIQP----DVVTYNTMARAYAQNGETEKAERLILKMQYNKVKPNERT 273

Query: 444 IRLIIDFYGISKKADAALKAFHDDRTLC---GPISKFKLMLLYSSLLRTL---TKCKRDF 497
             +II  Y        AL+  +  + L     P+       +++SL++     T      
Sbjct: 274 CGIIISGYCKEGNMTEALRFLYRMKELGVHPNPV-------VFNSLIKGYLDATDTNGVD 326

Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           +A+ ++EE    GI PDV TFS +M  ++  G     +++F+ + + G+EPD + + +L 
Sbjct: 327 EALTLMEEF---GIKPDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIEPDIHAYSILA 383

Query: 558 QAYCK 562
           + Y +
Sbjct: 384 KGYVR 388



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 73/427 (17%), Positives = 164/427 (38%), Gaps = 51/427 (11%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T   L   L + +R   +  L+  ++ +     S+    ++  +S SG ++  +  + + 
Sbjct: 97  TYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMINAFSDSGKVDEAMKIFQKM 156

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV-IDEGAIPNSRTYTVMIEHLVNLGK 222
           ++     +T +YN ++  +   G+ +E+++    +  DE   PN RTY ++I+      K
Sbjct: 157 KEYGCKPTTSTYNTLIKGFGIVGRPYESMKLLEMMGQDENVKPNDRTYNILIQAWCTKKK 216

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRV 281
           L+ A  V   +    I+     Y  +   +      ++A+ L+ +M+ +   P  R   +
Sbjct: 217 LEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETEKAERLILKMQYNKVKPNERTCGI 276

Query: 282 ALERMQEMGFIQGANEFLREML-----PDKRIKN--VRYYEDGSDDDEDENDDNNSGVRI 334
            +    + G +  A  FL  M      P+  + N  ++ Y D +D      +  +  + +
Sbjct: 277 IISGYCKEGNMTEALRFLYRMKELGVHPNPVVFNSLIKGYLDATD-----TNGVDEALTL 331

Query: 335 AYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFC 394
                +KP  D    +  ++ WS     L+ + + ++   +                   
Sbjct: 332 MEEFGIKP--DVVTFSTIMNAWSS--AGLMDNCEEIFNDMV------------------- 368

Query: 395 WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS 454
               + G   D++A   +     R G     + L+  +   G++        II  +  +
Sbjct: 369 ----KAGIEPDIHAYSILAKGYVRAGQPRKAESLLTSMSKYGVQTNVVIFTTIISGWCAA 424

Query: 455 KKADAALKAFHDDRTLCGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
            K D A        +LC  + +      +  Y +L+    + K+ + A  +L  M   G+
Sbjct: 425 GKMDRAF-------SLCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEEILSTMEERGV 477

Query: 512 VPDVQTF 518
           VP++ T 
Sbjct: 478 VPEMSTM 484



 Score = 42.0 bits (97), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 34/163 (20%), Positives = 71/163 (43%), Gaps = 1/163 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F  +M  +S++G ++     +N+  +        +Y+I+   Y + G+  +A      
Sbjct: 342 VTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAESLLTS 401

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G   N   +T +I      GK+D A  +   +  M      K Y  L+ G+   ++
Sbjct: 402 MSKYGVQTNVVIFTTIISGWCAAGKMDRAFSLCEKMHEMGTSPNLKTYETLIWGYGEAKQ 461

Query: 258 FDEAKSLLNEMRDDGKFPGRA-MRVALERMQEMGFIQGANEFL 299
             +A+ +L+ M + G  P  + M++  +  + +G  + AN  L
Sbjct: 462 PWKAEEILSTMEERGVVPEMSTMQLVADAWRAIGLFKEANRIL 504


>gi|326524964|dbj|BAK04418.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 565

 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 117/259 (45%), Gaps = 27/259 (10%)

Query: 351 NTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPET-AWHFFCWVAYQPGYTHDVYAL 409
           +TL E  P V + L       + +LV +VL++  +    A  FF W   Q G+ +   + 
Sbjct: 125 STLPE--PRVPAALDALGASVSPQLVAEVLKNLSNAGILALAFFRWAERQQGFVYTADSF 182

Query: 410 EKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRT 469
             ++  L +     LV  L+  +R  G+ L   T RLI+  Y  ++K   A++ F     
Sbjct: 183 HNLIEALGKIKQFRLVWSLVEAMRCRGL-LSKDTFRLIVRRYARARKVKEAVETFEK--- 238

Query: 470 LCGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSG-IVPDVQTFSGLMYHF 525
               ++ F L   +  Y+ L+  L+K K+   A  + +EM  +G  VPD++T++ LM  +
Sbjct: 239 ----MAGFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVLMEGW 294

Query: 526 ALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDA 573
             + D  +++ ++  +   G++PD   + +LI ++CK             +  +  MP  
Sbjct: 295 GHEKDLLMLKSVYQEMLDAGLQPDVVAYGMLISSFCKSGKCDEAIKVFREMETNGCMPSP 354

Query: 574 ATKELLKKSLWKEGRRKEA 592
               +L   L  E R  EA
Sbjct: 355 HVYCMLINGLGSEERLDEA 373



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 83/174 (47%), Gaps = 11/174 (6%)

Query: 108 LATVLAKSQRNHELKTLIGDIS-SSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR 166
           L  VL+KS++  +   +  ++  + +F+     +  LM+ +    DL ++ S + E    
Sbjct: 254 LIDVLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVLMEGWGHEKDLLMLKSVYQEMLDA 313

Query: 167 AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
                  +Y +++S + K+GK  EA++ FR++   G +P+   Y ++I  L +  +LD A
Sbjct: 314 GLQPDVVAYGMLISSFCKSGKCDEAIKVFREMETNGCMPSPHVYCMLINGLGSEERLDEA 373

Query: 227 LEVF-----SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           L+ F     S  P M +   +     +V  +    +F  A  +++EMR  G  P
Sbjct: 374 LKYFELSKASGFP-MEVPTCNA----VVGAYCRSSKFQHAFKMVDEMRKSGIGP 422



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 6/143 (4%)

Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           +   + N V+  Y ++ K   A +   ++   G  PNSRTY +++ HL+   K++ A  V
Sbjct: 387 MEVPTCNAVVGAYCRSSKFQHAFKMVDEMRKSGIGPNSRTYDIILHHLIKSQKIEEAYNV 446

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEM 289
           F  +     +     Y ++V  F   ER D A  + N+M++ G  P   M  AL  +  +
Sbjct: 447 FQGMSKDGCEPQLNTYTMMVGMFCSNERVDVALKVWNQMKEKGVLPCMHMFSAL--INGL 504

Query: 290 GF---IQGANEFLREMLPDKRIK 309
            F   ++ A  + +EML D+ I+
Sbjct: 505 CFENRLEEACAYFQEML-DRGIR 526



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 1/153 (0%)

Query: 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206
           Y  S   +      +E R+     ++ +Y+I++    K+ K  EA   F+ +  +G  P 
Sbjct: 399 YCRSSKFQHAFKMVDEMRKSGIGPNSRTYDIILHHLIKSQKIEEAYNVFQGMSKDGCEPQ 458

Query: 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
             TYT+M+    +  ++D AL+V++ +    +      +  L+ G     R +EA +   
Sbjct: 459 LNTYTMMVGMFCSNERVDVALKVWNQMKEKGVLPCMHMFSALINGLCFENRLEEACAYFQ 518

Query: 267 EMRDDG-KFPGRAMRVALERMQEMGFIQGANEF 298
           EM D G + PG+      E + E G I  A E 
Sbjct: 519 EMLDRGIRPPGQLFSNLKEALIEGGRISLAQEM 551



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 87/398 (21%), Positives = 159/398 (39%), Gaps = 46/398 (11%)

Query: 133 FLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV 192
           F+  + +F NL++         LV S     R R  LLS +++ +++  YA+  K  EAV
Sbjct: 175 FVYTADSFHNLIEALGKIKQFRLVWSLVEAMRCRG-LLSKDTFRLIVRRYARARKVKEAV 233

Query: 193 ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL-MRIKRTSKQYLILVEG 251
           ETF ++   G   +   Y  +I+ L    ++  A  +F  +    R     K Y +L+EG
Sbjct: 234 ETFEKMAGFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVLMEG 293

Query: 252 FVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREM-----LPD 305
           +   +     KS+  EM D G  P   A  + +    + G    A +  REM     +P 
Sbjct: 294 WGHEKDLLMLKSVYQEMLDAGLQPDVVAYGMLISSFCKSGKCDEAIKVFREMETNGCMPS 353

Query: 306 KRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVV--SL 363
             +  +     GS++  DE               LK +   KA    ++  +   V  + 
Sbjct: 354 PHVYCMLINGLGSEERLDE--------------ALKYFELSKASGFPMEVPTCNAVVGAY 399

Query: 364 LADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVE 423
              +KF    ++V ++ +    P +              T+D+     +L  L +   +E
Sbjct: 400 CRSSKFQHAFKMVDEMRKSGIGPNS-------------RTYDI-----ILHHLIKSQKIE 441

Query: 424 LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLY 483
               +   +  DG     +T  +++  +  +++ D ALK ++  +           M ++
Sbjct: 442 EAYNVFQGMSKDGCEPQLNTYTMMVGMFCSNERVDVALKVWNQMKE----KGVLPCMHMF 497

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL 521
           S+L+  L    R  +A    +EM+  GI P  Q FS L
Sbjct: 498 SALINGLCFENRLEEACAYFQEMLDRGIRPPGQLFSNL 535



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/161 (17%), Positives = 72/161 (44%), Gaps = 4/161 (2%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   DV A   +++   + G  +   ++  ++ ++G         ++I+  G  ++ D A
Sbjct: 314 GLQPDVVAYGMLISSFCKSGKCDEAIKVFREMETNGCMPSPHVYCMLINGLGSEERLDEA 373

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           LK F   +    P+     +   ++++    +  +   A  +++EM  SGI P+ +T+  
Sbjct: 374 LKYFELSKASGFPME----VPTCNAVVGAYCRSSKFQHAFKMVDEMRKSGIGPNSRTYDI 429

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           +++H       +    +F  + ++G EP    + +++  +C
Sbjct: 430 ILHHLIKSQKIEEAYNVFQGMSKDGCEPQLNTYTMMVGMFC 470


>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 804

 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 117/565 (20%), Positives = 221/565 (39%), Gaps = 67/565 (11%)

Query: 53  NSSNSLSSLLNDRL--LDPFIVTHALRSAPNADSAL------SIMEALKSNPNFSHNQST 104
           +S N +   L  ++  L P IVT+ +++ PN+          S    L+S    SHN   
Sbjct: 41  DSVNPIEPALESKVPFLSPSIVTYIIKNPPNSLLGFRFFIWASKFRRLRSW--VSHNM-- 96

Query: 105 LHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYR 164
              +  +L K         ++ +I    F   +  F  L+Q Y+    +E  + ++   +
Sbjct: 97  ---IIDMLIKDNGFELYWQVLKEIKRCGFSISADAFTVLIQAYAKMDMIEKAVESFEMMK 153

Query: 165 QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
                    +YN V+ V  +      A+  + +++    +PN  T++++I+ +   GK  
Sbjct: 154 DFDCKPDVFTYNTVLHVMVRKEVVLLALGIYNRMLKLNCLPNIATFSILIDGMCKSGKTQ 213

Query: 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA-L 283
           +AL++F  +   RI      Y I++ G    ++ D A  L   M+D G  P      A L
Sbjct: 214 NALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVTYNALL 273

Query: 284 ERMQEMGFIQGANEFLREMLPDKRIKNVRYYE---DGSDDDEDENDDNNSGVRIAYGVQL 340
               ++G +  A   L+    D+ + + + Y    DG        D      ++ Y    
Sbjct: 274 HGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFRARRFED-----AQVWYRKMT 328

Query: 341 KPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQP 400
           +  + P  +  T+      +  L    KF    RL+ ++      P+T     C+ A   
Sbjct: 329 EHNIKPDVILYTI-----MMKGLSKAGKFKDALRLLNEMTERGLVPDTH----CYNALIK 379

Query: 401 GYT-----------------HDVYALEKMLTIL----ARHGHVELVDRLIAKLRSDGMRL 439
           GY                  +D ++     TIL     R G V    ++  ++   G   
Sbjct: 380 GYCDLGLLDEAKSLHLEISKNDCFSSACTYTILICGMCRSGLVGDAQQIFNEMEKHGCYP 439

Query: 440 PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGP-----ISKFKLMLLYSSLLRTLTKCK 494
              T   +ID +  +   + A   F+       P     +S+    +L ++ L+T+ +  
Sbjct: 440 SVVTFNALIDGFCKAGNIEKAQLLFYKMEIGRNPSLFLRLSQGANRVLDTASLQTMVEQL 499

Query: 495 RD----FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA 550
            D      A N+L ++  SG  P++ T++ L++ F   G+     KLF  ++  G+ PD+
Sbjct: 500 CDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKAGNINGAFKLFKELQLKGLSPDS 559

Query: 551 YMFKVLIQAYCKYLSNSNLMPDAAT 575
             +  LI      L ++N   DA T
Sbjct: 560 VTYGTLING----LLSANREEDAFT 580



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 101/478 (21%), Positives = 185/478 (38%), Gaps = 58/478 (12%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALA----TVLAKSQRNHELKTLIGDISSSKFLNVS 137
           A  +  +M+     P+     + LH +      +LA    N  LK           LN  
Sbjct: 145 AVESFEMMKDFDCKPDVFTYNTVLHVMVRKEVVLLALGIYNRMLK-----------LNCL 193

Query: 138 VN---FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
            N   F  L+     SG  +  L  ++E  QR  L +  +Y I++S   +  K   A   
Sbjct: 194 PNIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYRL 253

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
           F  + D G IP+S TY  ++     LG++D AL +       R     + Y  L++G   
Sbjct: 254 FIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFR 313

Query: 255 VERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM-----LPDKRI 308
             RF++A+    +M +    P   +  + ++ + + G  + A   L EM     +PD   
Sbjct: 314 ARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHC 373

Query: 309 KN--VRYYEDGSDDDE--------DENDDNNSG----VRIAYGVQLKPWLDPKALANTLD 354
            N  ++ Y D    DE         +ND  +S     + I    +     D + + N ++
Sbjct: 374 YNALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILICGMCRSGLVGDAQQIFNEME 433

Query: 355 EWS--PEVVSL------LADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDV 406
           +    P VV+          A  +   +L+   +   ++P      F  ++       D 
Sbjct: 434 KHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKMEIGRNPS----LFLRLSQGANRVLDT 489

Query: 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD 466
            +L+ M+  L   G +     ++ +L   G      T  ++I  +  +   + A K F +
Sbjct: 490 ASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKAGNINGAFKLFKE 549

Query: 467 DRTLCG--PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
            + L G  P S     + Y +L+  L    R+ DA  VL++++ +G  P  + +   M
Sbjct: 550 LQ-LKGLSPDS-----VTYGTLINGLLSANREEDAFTVLDQILKNGCTPITEVYKSFM 601



 Score = 42.7 bits (99), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 12/139 (8%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS L+  L + +R  DA     +M    I PDV  ++ +M   +  G  K   +L + + 
Sbjct: 304 YSCLIDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMT 363

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
           + G+ PD + +  LI+ YC              +S ++    A T  +L   + + G   
Sbjct: 364 ERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILICGMCRSGLVG 423

Query: 591 EAAAVEERCEKINDVPSLA 609
           +A  +    EK    PS+ 
Sbjct: 424 DAQQIFNEMEKHGCYPSVV 442



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 45/266 (16%), Positives = 111/266 (41%), Gaps = 28/266 (10%)

Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVA----YQPGYTHDVYA 408
           +D  +P   +L +   F+ +  +V  ++++  +    + FF W +     +   +H++  
Sbjct: 40  IDSVNPIEPALESKVPFL-SPSIVTYIIKNPPNSLLGFRFFIWASKFRRLRSWVSHNM-- 96

Query: 409 LEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR 468
              ++ +L +    EL  +++ +++  G  +      ++I  Y      + A+++F   +
Sbjct: 97  ---IIDMLIKDNGFELYWQVLKEIKRCGFSISADAFTVLIQAYAKMDMIEKAVESFEMMK 153

Query: 469 TL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
              C P      +  Y+++L  + + +    A+ +   M+    +P++ TFS L+     
Sbjct: 154 DFDCKPD-----VFTYNTVLHVMVRKEVVLLALGIYNRMLKLNCLPNIATFSILIDGMCK 208

Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAAT 575
            G  +   ++F  + Q  + P+   + ++I   C+             + +   +PD+ T
Sbjct: 209 SGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVT 268

Query: 576 KELLKKSLWKEGRRKEAAAVEERCEK 601
              L     K GR  EA  + +  EK
Sbjct: 269 YNALLHGFCKLGRVDEALGLLKYFEK 294


>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
          Length = 761

 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 112/520 (21%), Positives = 201/520 (38%), Gaps = 69/520 (13%)

Query: 64  DRLLDPFIVTH-----ALRSAPNADSALSIMEALKSN---PNFSHNQSTLHALATVLAKS 115
           DR + P +VT+     AL      D A+ ++ ++  N   PN     S +H   +     
Sbjct: 224 DRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPK 283

Query: 116 QRNHELKTLIGDISSSKFLNVSV-NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTES 174
           +    LK +  D      L   +  +  L+Q Y+T G L  + +  +   +         
Sbjct: 284 EAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYV 343

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YNI++  YAK GK  EA+  F ++  +G  P++ TY  +I  L   G+++ A+  F  + 
Sbjct: 344 YNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMI 403

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQG 294
              +   +  Y  L+ G     +++ A+ L+ EM D G        + L           
Sbjct: 404 DEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRG--------ICL----------- 444

Query: 295 ANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYG---VQLKPWLDPKALAN 351
            N      + D   K  R  E     D          VRI      +     +D   LA 
Sbjct: 445 -NTIFFNSIIDSHCKEGRVIESEKLFD--------LMVRIGVKPDIITYSTLIDGYCLAG 495

Query: 352 TLDEWS---PEVVSLLADAKFVWTTRLV---CKVLRH------FKSPETAWHFFCWVAYQ 399
            +DE       +VS+      V    L+   CK+ R       FK  E++          
Sbjct: 496 KMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESS---------- 545

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
            G + D+     +L  L +         L  ++   G ++  ST  +I+     +K  D 
Sbjct: 546 -GVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDD 604

Query: 460 ALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
           AL+ F +   LC  +   KL    ++ ++  L K  R+ +A ++      +G+VP+  T+
Sbjct: 605 ALRMFQN---LC--LMDLKLEARTFNIMIDALLKVGRNGEAKDLFVAFSSNGLVPNYWTY 659

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
             +  +   QG  + + +LF  +  NG   D+ M   +++
Sbjct: 660 RLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVR 699



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 96/464 (20%), Positives = 185/464 (39%), Gaps = 66/464 (14%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SY  V++ + K G + +A  T+ +++D    P+  TY+ +I  L     +D A+EV +++
Sbjct: 198 SYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSM 257

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVA-----LERMQ 287
               +    + Y  ++ G+    +  EA   L ++R DG  P G    +A     L+   
Sbjct: 258 VKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYA 317

Query: 288 EMGFIQGANEFLREML-----PDKRIKNV---RYYEDGSDDD----------EDENDDNN 329
             G + G +  L  M+     PD  + N+    Y + G  D+          +  N D  
Sbjct: 318 TKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPD-- 375

Query: 330 SGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPE 387
               + YG  +        + + +  +   +   L+    V+ + +  +C   +  ++ E
Sbjct: 376 ---AVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEE 432

Query: 388 TAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLI 447
                        G   +      ++    + G V   ++L   +   G++    T   +
Sbjct: 433 LILEML-----DRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTL 487

Query: 448 IDFYGISKKADAALKAFHDDRTLCGPIS-KFKL-MLLYSSLLRTLTKCKRDFDAINVLEE 505
           ID Y ++ K D A+K       L G +S   K   + Y +L+    K  R  DA+ + +E
Sbjct: 488 IDGYCLAGKMDEAMK------LLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKE 541

Query: 506 MIFSGIVPDVQTFSGLMYHFALQG-----DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
           M  SG+ PD+ T     Y+  LQG          ++L+  + ++G + +   + +++   
Sbjct: 542 MESSGVSPDIIT-----YNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGL 596

Query: 561 CK---------YLSNSNLMP---DAATKELLKKSLWKEGRRKEA 592
           CK            N  LM    +A T  ++  +L K GR  EA
Sbjct: 597 CKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNGEA 640


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 105/510 (20%), Positives = 200/510 (39%), Gaps = 61/510 (11%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T   L       +R+ E K ++ ++         + +  L+  +   GD+E      +E 
Sbjct: 287 TYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEM 346

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
                  +   +N +++   K GK  +A+E  ++++++G  P+S+TY+++IE       +
Sbjct: 347 VACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNM 406

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-------- 275
             A E+   +   ++  T   Y +++ G           ++L EM  +G  P        
Sbjct: 407 ARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTL 466

Query: 276 -------GRA--MRVALERMQEMGFI-------------------QGANEFLREMLPDKR 307
                  GR    R+ LERM+E G +                   + A  +L EML  + 
Sbjct: 467 MTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRL 526

Query: 308 IKNVRYYE---DG-SDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSL 363
             N   Y    DG S   E E  D      ++ GV     +    +     E +  V   
Sbjct: 527 RPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGN--VTEA 584

Query: 364 LADAKFVWTTRLV-----CKVLRHFKSPETAWH--FFCWVAYQP-GYTHDVYALEKMLTI 415
            +  +F+ + R++       VL H  S     H  F  +   Q  G   + +    +++ 
Sbjct: 585 FSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISG 644

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA-LKAFHDDRTLCGPI 474
             + G+V+   +L+ ++   G+     T  ++ID  G+ K  +    K   DD    G  
Sbjct: 645 SCKQGNVDKASQLLEEMCIKGINPDIVTYNILID--GLCKAGEIERAKNLFDDIEGRGLT 702

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
                 + Y++++    K K    A  +LEEM+  G+ PD   ++ ++ +F  + +EK  
Sbjct: 703 PN---CVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYN-VILNFCCK-EEKFE 757

Query: 535 QK--LFSMVRQNGVEPDAYMFKVLIQAYCK 562
           +   LF  + + G       F  LI+ YCK
Sbjct: 758 KALDLFQEMLEKGF-ASTVSFNTLIEGYCK 786



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 96/488 (19%), Positives = 185/488 (37%), Gaps = 84/488 (17%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y  ++S + K G   +A     ++ ++G  PN  TY V+I  L     LD A+E+  ++
Sbjct: 217 TYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSM 276

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG----------------- 276
               +      Y IL+ GF   +R  EAK +L EM D G  P                  
Sbjct: 277 VDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDI 336

Query: 277 -RAMRVA------------------LERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDG 317
            +A R+                   L  + + G ++ A E ++EM+           E G
Sbjct: 337 EQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMM-----------EKG 385

Query: 318 SDDDEDEN----DDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTT 373
            + D        + +  G  +A   +L   +  + LA T+  +S  +  L        T 
Sbjct: 386 VEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTN 445

Query: 374 RLVCKVLRHFKSPETAWHFFCWVAY-----------------QPGYTHDVYALEKMLTIL 416
            ++ +++ +   P    +     A+                 + G   DV+    ++   
Sbjct: 446 AILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGF 505

Query: 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK 476
            +   +E     + ++    +R    T    ID Y  + + + A + F++  + CG +  
Sbjct: 506 CKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLS-CGVLPN 564

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
             +   Y++L+    K     +A +V   ++   ++ DVQT+S L++  +  G       
Sbjct: 565 VGI---YTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFG 621

Query: 537 LFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLW 584
           +FS +++ G+ P+A+ +  LI   CK             +    + PD  T  +L   L 
Sbjct: 622 IFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLC 681

Query: 585 KEGRRKEA 592
           K G  + A
Sbjct: 682 KAGEIERA 689



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 97/230 (42%), Gaps = 5/230 (2%)

Query: 104  TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
            + + L     KS +  E   L+ ++   +F+   V + +L+     +G +      W E 
Sbjct: 776  SFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEM 835

Query: 164  RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
            ++R  + + ++Y  ++  Y   G   E    F +++ +G  P+  TY VMI+     G +
Sbjct: 836  QERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNV 895

Query: 224  DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
              A ++   + +  +  +   Y  L++     E F E   LLNE+ + G   G      +
Sbjct: 896  MEACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVI 955

Query: 284  ER-MQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDED----ENDDN 328
             R  Q  G +  A E LR M+    + N     D  D +++    E+ DN
Sbjct: 956  ARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDGNQNGANSEDSDN 1005



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 53/107 (49%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           ST S+N ++  Y K+GK  EA     ++I++  IPN  TYT +I+H    G +  A  ++
Sbjct: 773 STVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLW 832

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR 277
             +    +  T+K Y  L+ G+  +    E  +L  EM   G  P +
Sbjct: 833 LEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDK 879



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 87/485 (17%), Positives = 186/485 (38%), Gaps = 85/485 (17%)

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           + + K L     + N++  +   G+++       E  ++    +  +YN+++    +   
Sbjct: 206 MCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARL 265

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
             EA+E  R ++D+G +P+  TY ++I       +   A  +   +  + +K     Y  
Sbjct: 266 LDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNA 325

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDK 306
           L++GF+     ++A  + +EM   G      +    L  + + G ++ A E ++EM+   
Sbjct: 326 LIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMM--- 382

Query: 307 RIKNVRYYEDGSDDDEDEN----DDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVS 362
                   E G + D        + +  G  +A   +L   +  + LA T+  +S  +  
Sbjct: 383 --------EKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIING 434

Query: 363 LLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHV 422
           L        T  ++ +++ +   P                   VY    ++T  A+ G V
Sbjct: 435 LCRCGNLQGTNAILREMVMNGLKPNAV----------------VYT--TLMTAHAKEGRV 476

Query: 423 ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLL 482
           E    ++ ++R  G+ LP        D +                               
Sbjct: 477 EESRMILERMREQGI-LP--------DVF------------------------------C 497

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+SL+    K KR  +A   L EM+   + P+  T+   +  ++  G+ +I  + F+ + 
Sbjct: 498 YNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEML 557

Query: 543 QNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRK 590
             GV P+  ++  LI+ +CK            ++ +  ++ D  T  +L   L + G+  
Sbjct: 558 SCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMH 617

Query: 591 EAAAV 595
           EA  +
Sbjct: 618 EAFGI 622



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/247 (21%), Positives = 99/247 (40%), Gaps = 7/247 (2%)

Query: 62  LNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQ 116
           +  R L P ++T+      L    N     +I+  +  N     N      L T  AK  
Sbjct: 416 MKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMN-GLKPNAVVYTTLMTAHAKEG 474

Query: 117 RNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYN 176
           R  E + ++  +     L     + +L+  +  +  +E   +   E  +R    +  +Y 
Sbjct: 475 RVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYG 534

Query: 177 IVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM 236
             +  Y+K G+   A   F +++  G +PN   YT +IE     G +  A  VF  +   
Sbjct: 535 AFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSR 594

Query: 237 RIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGA 295
           R+ +  + Y +L+ G     +  EA  + +E+++ G  P      +L     + G +  A
Sbjct: 595 RVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKA 654

Query: 296 NEFLREM 302
           ++ L EM
Sbjct: 655 SQLLEEM 661



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/207 (20%), Positives = 83/207 (40%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T   L   L+++ + HE   +  ++     L  +  + +L+      G+++       E 
Sbjct: 602 TYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEM 661

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
             +       +YNI++    K G+   A   F  +   G  PN  TY  M++        
Sbjct: 662 CIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNP 721

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
            +A ++   + L  +   +  Y +++      E+F++A  L  EM + G     +    +
Sbjct: 722 TAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLI 781

Query: 284 ERMQEMGFIQGANEFLREMLPDKRIKN 310
           E   + G +Q AN  L EM+  + I N
Sbjct: 782 EGYCKSGKLQEANHLLEEMIEKQFIPN 808



 Score = 46.6 bits (109), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 102/225 (45%), Gaps = 33/225 (14%)

Query: 402 YTHDV----YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA 457
           YT+D+    + +EK     +R   + L++ +   L+ + +     T   +ID  G  ++ 
Sbjct: 286 YTYDILINGFCMEKR----SREAKLMLLEMIDVGLKPEPI-----TYNALID--GFMRQG 334

Query: 458 DAALKAFH--DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
           D   +AF   D+   CG  +    ++++++LL  + K  +   A+ +++EM+  G+ PD 
Sbjct: 335 DIE-QAFRIKDEMVACGIEAN---LIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDS 390

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY--LSNSN----- 568
           QT+S L+       +     +L   +++  + P    + V+I   C+   L  +N     
Sbjct: 391 QTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILRE 450

Query: 569 -----LMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
                L P+A     L  +  KEGR +E+  + ER  +   +P +
Sbjct: 451 MVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDV 495



 Score = 42.4 bits (98), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 4/102 (3%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+SL+    K     +A  +  EM    ++P  +T++ L++ +   G+   V  LF  + 
Sbjct: 812 YTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMV 871

Query: 543 QNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATK-ELLKKSL 583
             G+EPD   + V+I AYC+     N+M     K E+L K +
Sbjct: 872 AKGIEPDKMTYYVMIDAYCR---EGNVMEACKLKDEILVKGM 910



 Score = 39.3 bits (90), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 48/240 (20%), Positives = 99/240 (41%), Gaps = 15/240 (6%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALR-----SAPNADSALSIMEA--LKS 94
           LID +  A     + +L   +  R L P  VT+A        + N  +A  ++E   L+ 
Sbjct: 676 LIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRG 735

Query: 95  NP--NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD 152
            P   F +N      +     K ++  +   L  ++    F + +V+F  L++ Y  SG 
Sbjct: 736 VPPDAFIYN-----VILNFCCKEEKFEKALDLFQEMLEKGFAS-TVSFNTLIEGYCKSGK 789

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
           L+       E  ++  + +  +Y  ++    K G   EA   + ++ +   +P ++TYT 
Sbjct: 790 LQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTS 849

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           ++    N+G +     +F  +    I+     Y ++++ +       EA  L +E+   G
Sbjct: 850 LLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKG 909


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 99/475 (20%), Positives = 186/475 (39%), Gaps = 62/475 (13%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  L++ Y    + +       E R+R   L+T +YN++++   ++G   EA    + + 
Sbjct: 120 YSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDME 179

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           D G +P+  TY  +I  L    + + A  +   +    +K     Y  L++GF+     D
Sbjct: 180 DYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNAD 239

Query: 260 EAKSLLNEMRDDGKFPGRAMRVALER-MQEMGFIQGANEFLREMLPDKRIKNVRYYE--- 315
           EA  ++ EM   G  P +     L R + +MG +  A+  L++M+ D    +   Y    
Sbjct: 240 EAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLII 299

Query: 316 DGSDDDEDENDD-------NNSGVR---IAYGVQLKPWL---DPKALANTLDEWSPEVVS 362
           +G     ++ D         N+G+      Y + +       +P+  ++ L+E + +   
Sbjct: 300 EGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKG-- 357

Query: 363 LLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWV---AYQPGYTHDVYALEKMLTILARH 419
            L    FV+   L+    R     E      C +     +     D+Y    ++  L++ 
Sbjct: 358 -LKPNAFVYAP-LISGYCR-----EGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKV 410

Query: 420 GHVELVDRLIAKLRSDGMRLP--FSTIRLIIDFYG----------ISKKADAALK----- 462
           G VE   +  A+++  G+ LP  F+   LI  +            + +  D  LK     
Sbjct: 411 GRVEESTKYFAQMQERGL-LPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVI 469

Query: 463 ------AFHDDRTLCGPISKFKLML---------LYSSLLRTLTKCKRDFDAINVLEEMI 507
                 ++     +    S FK ML         +Y  L+  L+       A  VL E+ 
Sbjct: 470 YIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIE 529

Query: 508 FSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            +G VPDV  +S L+       D +    +   + + GV+P+   +  LI   CK
Sbjct: 530 KNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCK 584



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 93/460 (20%), Positives = 179/460 (38%), Gaps = 54/460 (11%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y+ ++  Y K  +   A +   ++ + G   N+ TY V+I  L   G ++ A      +
Sbjct: 119 TYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDM 178

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
               +      Y  L+ G     R +EAK+LL+EM      P   +   L        I 
Sbjct: 179 EDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANL--------ID 230

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKAL---A 350
           G   F+RE   D+  K ++              DN     +  G+     +D  +L    
Sbjct: 231 G---FMREGNADEAFKMIKEMVAAGVQPNKITYDN-----LVRGLCKMGQMDRASLLLKQ 282

Query: 351 NTLDEWSPEVVS--LLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYA 408
              D   P+ ++  L+ +  F           RH    + A+     +    G + +VY 
Sbjct: 283 MVRDSHRPDTITYNLIIEGHF-----------RHHNKKD-AFRLLSEME-NAGISPNVYT 329

Query: 409 LEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR 468
              M+  L + G  E    L+ ++ + G++        +I  Y        A + F D  
Sbjct: 330 YSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIF-DKM 388

Query: 469 TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
           T    ++    +  Y+SL+  L+K  R  ++     +M   G++P+  T+SGL++ +   
Sbjct: 389 T---KVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKN 445

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY------------CKYLSNSNLMPDAATK 576
           GD +  ++L   +   G++P+  ++  L+++Y             K + +  +M D    
Sbjct: 446 GDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIY 505

Query: 577 ELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWA 616
            +L  +L   G  + A  V    EK   VP +    H+++
Sbjct: 506 GILIHNLSSSGNMEAAFRVLSEIEKNGSVPDV----HVYS 541



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/230 (20%), Positives = 97/230 (42%), Gaps = 5/230 (2%)

Query: 86  LSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQ 145
           LS ME    +PN       +H L     +S    +   L+ ++++      +  +  L+ 
Sbjct: 315 LSEMENAGISPNVYTYSIMIHGLC----QSGEPEKASDLLEEMTTKGLKPNAFVYAPLIS 370

Query: 146 WYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP 205
            Y   G++ L    +++  +   L     YN ++   +K G+  E+ + F Q+ + G +P
Sbjct: 371 GYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLP 430

Query: 206 NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL 265
           N  TY+ +I   +  G L+SA ++   +    +K     Y+ L+E +   +  ++  S  
Sbjct: 431 NEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTF 490

Query: 266 NEMRDDG-KFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
             M D G     R   + +  +   G ++ A   L E+  +  + +V  Y
Sbjct: 491 KSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVY 540



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 21/144 (14%)

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
           +YSSL+  L K      A  +L+EM   G+ P++  ++ L+      GD    + +F+ +
Sbjct: 539 VYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSI 598

Query: 542 RQNGVEPDAYMFKVLIQAYCK--------YLSN----SNLMPDAATKELLKKSLWKEGRR 589
              G+ P+   +  LI   CK        YL N    + + PDA    +L       G  
Sbjct: 599 LAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDL 658

Query: 590 KEAAAVEERCEKINDVPSLALRGH 613
           ++A  + E          + LRGH
Sbjct: 659 EQAMFLIEE---------MFLRGH 673



 Score = 46.6 bits (109), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 87/440 (19%), Positives = 165/440 (37%), Gaps = 50/440 (11%)

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           ++++  Y K+G+  +A E    + D G  P+ R    +++ L+    +    +V   +  
Sbjct: 51  DVLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVG 110

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQG 294
             I      Y  L+E +  V  FD AK +L EMR+ G         V +  +   G ++ 
Sbjct: 111 AGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEE 170

Query: 295 ANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLD 354
           A  F ++M                +D     D    G  I    + +   + KAL + + 
Sbjct: 171 AFGFKKDM----------------EDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMS 214

Query: 355 --EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
             E  P VV             L+   +R   + E        VA   G   +    + +
Sbjct: 215 CAELKPNVVVY---------ANLIDGFMREGNADEAFKMIKEMVA--AGVQPNKITYDNL 263

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID--FYGISKKADAALKAFHDDRTL 470
           +  L + G ++    L+ ++  D  R    T  LII+  F   +KK    L +  ++  +
Sbjct: 264 VRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGI 323

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
              +  + +M      +  L +      A ++LEEM   G+ P+   ++ L+  +  +G+
Sbjct: 324 SPNVYTYSIM------IHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGN 377

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLI------------QAYCKYLSNSNLMPDAATKEL 578
             +  ++F  + +  V PD Y +  LI              Y   +    L+P+  T   
Sbjct: 378 VSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSG 437

Query: 579 LKKSLWKEGRRKEAAAVEER 598
           L     K G  + A  + +R
Sbjct: 438 LIHGYLKNGDLESAEQLVQR 457



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 55/133 (41%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+   S+SG++E      +E  +   +     Y+ ++S   KT    +A     ++  +G
Sbjct: 508 LIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKG 567

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             PN   Y  +I+ L   G +  A  VF+++    +      Y  L++G   V     A 
Sbjct: 568 VDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAF 627

Query: 263 SLLNEMRDDGKFP 275
            L NEM   G  P
Sbjct: 628 YLYNEMLATGITP 640



 Score = 43.5 bits (101), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 37/180 (20%), Positives = 73/180 (40%), Gaps = 6/180 (3%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +++L++ Y  S D+E V ST+     +  +L    Y I++   + +G    A     +
Sbjct: 468 VIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSE 527

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G++P+   Y+ +I  L      + A  +   +    +      Y  L++G      
Sbjct: 528 IEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGD 587

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREML-----PDKRIKNV 311
              A+++ N +   G  P      +L +   ++G I  A     EML     PD  + +V
Sbjct: 588 ISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSV 647



 Score = 43.5 bits (101), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 27/129 (20%), Positives = 56/129 (43%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           + +L+     + D E      +E  ++    +   YN ++    K+G    A   F  ++
Sbjct: 540 YSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSIL 599

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
            +G +PN  TYT +I+    +G + +A  +++ +    I   +  Y +L  G       +
Sbjct: 600 AKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLE 659

Query: 260 EAKSLLNEM 268
           +A  L+ EM
Sbjct: 660 QAMFLIEEM 668


>gi|297841889|ref|XP_002888826.1| hypothetical protein ARALYDRAFT_894959 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334667|gb|EFH65085.1| hypothetical protein ARALYDRAFT_894959 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 868

 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 122/282 (43%), Gaps = 28/282 (9%)

Query: 41  QLIDSIRLAVRSNSSNSLS-------SLLNDRLLDPFIVTHALRSAPNADSALSIMEALK 93
           QLID I   +R+ S++  +       S L  RL + F++     +  +  S L   +   
Sbjct: 67  QLIDRIFDILRAPSNDGDARAFYLHLSNLRLRLTEKFVLDVLTHTRYDILSCLKFFDWAA 126

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN----------L 143
             P F H ++T HA+  +L    R  +L TL+ D     FL+ SV F            L
Sbjct: 127 RQPGFHHTRATFHAIFKIL----RGAKLVTLMID-----FLDRSVAFEGYRHSLRLCDAL 177

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
           +  Y+ +G  ++ L  +   R R   L +  Y+++++   +  K F+ V+     I    
Sbjct: 178 VVGYAVAGRTDIALQHFGNMRFRGLDLDSFGYHVLLNALVEE-KCFDTVDVIFDQISVRG 236

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
              + T++++++ L   GKLD A     AL             ILV+      +F EA  
Sbjct: 237 FVCAVTHSILVKKLCKQGKLDEAEAYLRALLPNDPAGCGSGLGILVDALCSKRKFQEATK 296

Query: 264 LLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREMLP 304
           LL+E++  G     RA  + +  +   GF+    +FL+++ P
Sbjct: 297 LLDEIKVLGTVNMDRAYNIWIRALIGAGFLNNTVDFLQKISP 338



 Score = 42.7 bits (99), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 2/109 (1%)

Query: 166 RAKLLSTESYNIVM-SVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
           R  +  T   NI+M   Y K  K  +A+  F  + ++G     R Y VMI  L    +LD
Sbjct: 620 RDGITPTLDSNILMLQSYLKNEKIADALHFFHDLREKGK-TKKRLYQVMIVGLCKANRLD 678

Query: 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
            A+     +    ++ + + Y + ++     E++DEA  L+NE R  G+
Sbjct: 679 DAMHFLEEMKGEGLRPSIECYEVNIQKLCNEEKYDEAVGLVNEFRKSGR 727


>gi|308082018|ref|NP_001183846.1| uncharacterized protein LOC100502439 [Zea mays]
 gi|238014984|gb|ACR38527.1| unknown [Zea mays]
 gi|414872746|tpg|DAA51303.1| TPA: hypothetical protein ZEAMMB73_971718 [Zea mays]
          Length = 623

 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 108/254 (42%), Gaps = 27/254 (10%)

Query: 357 SPEVVSLLADAKFV-WTTRLVCKVLRHFKSP-ETAWHFFCWVAYQPGYTHDVYALEKMLT 414
           SPE + +  D   V  + RLV KVL  F +    A+ FF W   Q GY H   + + M+ 
Sbjct: 146 SPEAIVITMDCCPVRVSARLVSKVLSRFSNDWVAAFGFFMWAGTQEGYCHCADSYDMMVD 205

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGP 473
           IL +    +L+  LI ++   G  +  +T+  ++     + +   A+ AFH  DR   G 
Sbjct: 206 ILGKFKQFDLMCGLIGQMHEIGGLVSLATMTKVMRRLCGANRWSDAIDAFHKMDRF--GV 263

Query: 474 ISKFKLMLLYSSLLRTLTK---CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
               K M   + LL TL K    KR   A   L+      I PD  +F+ L++ +     
Sbjct: 264 AKDTKAM---NVLLDTLCKERSVKRARGAFQALK----GTIPPDESSFNTLVHGWCKARM 316

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKEL 578
            K  ++    + ++G  P    +  LI+AYC              +      P+  T  +
Sbjct: 317 LKEARETMKEMERHGFSPSVTTYTCLIEAYCMEKDFQTVDGILDEMHTKGCTPNIITYTI 376

Query: 579 LKKSLWKEGRRKEA 592
           +  +L K GR +EA
Sbjct: 377 VMHALGKAGRTQEA 390



 Score = 46.2 bits (108), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 67/161 (41%), Gaps = 8/161 (4%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           LLD      +++ A  A       +ALK       ++S+ + L     K++   E +  +
Sbjct: 273 LLDTLCKERSVKRARGA------FQALKGT--IPPDESSFNTLVHGWCKARMLKEARETM 324

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
            ++    F      +  L++ Y    D + V    +E   +    +  +Y IVM    K 
Sbjct: 325 KEMERHGFSPSVTTYTCLIEAYCMEKDFQTVDGILDEMHTKGCTPNIITYTIVMHALGKA 384

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
           G+  EA++TF +V  +G   ++  Y  +I  L   G+L  A
Sbjct: 385 GRTQEALDTFDKVKQDGCALDASFYNCLIYILCRAGRLQDA 425



 Score = 43.9 bits (102), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 42/206 (20%), Positives = 83/206 (40%), Gaps = 18/206 (8%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G++  V     ++         + VD ++ ++ + G      T  +++   G + +   A
Sbjct: 331 GFSPSVTTYTCLIEAYCMEKDFQTVDGILDEMHTKGCTPNIITYTIVMHALGKAGRTQEA 390

Query: 461 LKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           L  F    +  C   + F     Y+ L+  L +  R  DA  V+EEM  +GI P++ TF+
Sbjct: 391 LDTFDKVKQDGCALDASF-----YNCLIYILCRAGRLQDANFVVEEMHRTGISPNLTTFN 445

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNS 567
            L+         +   KL   + +    PD   +  L++  C+            ++   
Sbjct: 446 TLISAACDHSLAENALKLLVQMEEQSCNPDIKTYTPLLKLCCRRKWVKTLLFLICHMFRK 505

Query: 568 NLMPDAATKELLKKSLWKEGRRKEAA 593
           ++ PD +T  LL   L + GR  ++ 
Sbjct: 506 DITPDFSTYTLLVCWLCRNGRLTQSC 531


>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g22470, mitochondrial-like [Glycine max]
          Length = 468

 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 99/226 (43%), Gaps = 15/226 (6%)

Query: 60  SLLNDRLL---DPFIVTHAL------RSAPNADSALSIMEALKSNPN-FSHNQSTLHALA 109
           SLL++ +L   +P + T ++      +   NA      M  +  NPN +S+N      + 
Sbjct: 206 SLLHEMILKNINPDVYTFSILIDALCKEGKNAKQIFHAMVQMGVNPNVYSYN-----IMI 260

Query: 110 TVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKL 169
             L K +R  E   L+ ++     +  +V + +L+     SG +   L+  NE   R + 
Sbjct: 261 NGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQP 320

Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
               +Y  ++    K     +A   F ++ + G  P   TYT +I+ L   G+L +A E+
Sbjct: 321 ADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQEL 380

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           F  L +         Y +++ G      FDEA ++ ++M D+G  P
Sbjct: 381 FQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIP 426



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 14/128 (10%)

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
           F  ++ Y++L+       +   A ++L EMI   I PDV TFS L+     +G  K  ++
Sbjct: 182 FPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEG--KNAKQ 239

Query: 537 LFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLW 584
           +F  + Q GV P+ Y + ++I   CK             + + N++PD  T   L   L 
Sbjct: 240 IFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLC 299

Query: 585 KEGRRKEA 592
           K GR   A
Sbjct: 300 KSGRITSA 307



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 12/137 (8%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+SL+  L K  R   A+N++ EM   G   DV T++ L+       +      LF  ++
Sbjct: 291 YNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMK 350

Query: 543 QNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRK 590
           + G++P  Y +  LI   CK            +L       D  T  ++   L KEG   
Sbjct: 351 ERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFD 410

Query: 591 EAAAVEERCEKINDVPS 607
           EA A++ + E    +P+
Sbjct: 411 EALAIKSKMEDNGCIPN 427



 Score = 47.0 bits (110), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 89/437 (20%), Positives = 165/437 (37%), Gaps = 54/437 (12%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           + +I+++ +   G+   +     +++  G  PN+ T+T +++ L   G++   L     +
Sbjct: 47  TLSILINCFCHLGQMAFSFSLLGKILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKV 106

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFI 292
                +     Y  L+ G         A  LL  + D    P   M  A+ + + +   +
Sbjct: 107 VAQAFQTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLV 166

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLK---PWLDPKAL 349
             A +   EM   +   NV  Y             N          QL      L    L
Sbjct: 167 NEAYDLYSEMDAREIFPNVITY-------------NTLICAFCLAGQLMGAFSLLHEMIL 213

Query: 350 ANTLDEWSPEV--VSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY 407
            N     +P+V   S+L DA        +CK     K+ +  +H       Q G   +VY
Sbjct: 214 KNI----NPDVYTFSILIDA--------LCK---EGKNAKQIFH----AMVQMGVNPNVY 254

Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDD 467
           +   M+  L +   V+    L+ ++    M     T   +ID    S +  +AL   ++ 
Sbjct: 255 SYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEM 314

Query: 468 RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
                P      ++ Y+SLL  L K +    A  +  +M   GI P + T++ L+     
Sbjct: 315 HHRGQPAD----VVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCK 370

Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAAT 575
            G  K  Q+LF  +   G   D + + V+I   CK             + ++  +P+A T
Sbjct: 371 GGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVT 430

Query: 576 KELLKKSLWKEGRRKEA 592
            E++ +SL+++    +A
Sbjct: 431 FEIIIRSLFEKDENDKA 447



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 67/146 (45%)

Query: 123 TLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVY 182
           +L+G I    +   ++ +  LM+     G+++ +L   ++   +A   +  SY  +++  
Sbjct: 66  SLLGKILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGL 125

Query: 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
            KTG+   A++  R + D    PN   Y+ +I+ L     ++ A +++S +    I    
Sbjct: 126 CKTGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNV 185

Query: 243 KQYLILVEGFVGVERFDEAKSLLNEM 268
             Y  L+  F    +   A SLL+EM
Sbjct: 186 ITYNTLICAFCLAGQLMGAFSLLHEM 211


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 116/271 (42%), Gaps = 31/271 (11%)

Query: 65  RLLDPFIVT-------HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR 117
           R ++P +VT       H L+S    D A+ + + +  N  ++ N  + + L     K QR
Sbjct: 306 RGVEPNVVTYNALMDGHCLQS--EMDEAVKVFDTMVHN-GYAPNVISYNTLINGYCKIQR 362

Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI 177
             +   L  ++   + +  +V +  LM      G L+  ++ ++E     ++    +Y I
Sbjct: 363 MDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRI 422

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           ++    K     EA+   + +      P+ + YT++I+ +   G+L++A ++FS L    
Sbjct: 423 LLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKG 482

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG---------------RAMRVA 282
           ++   + Y I++ G       DEA  L  EM  +G  P                 A+R A
Sbjct: 483 LRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALR-A 541

Query: 283 LERMQEM---GFIQ--GANEFLREMLPDKRI 308
           ++ +QEM   GF         L EML D ++
Sbjct: 542 IQLLQEMLARGFSADVSTTTLLVEMLCDDKL 572



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 12/142 (8%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++++S+++  L K  +  +A +V++ MI  G+ P+V T++ LM    LQ +     K+F 
Sbjct: 277 VVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFD 336

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEG 587
            +  NG  P+   +  LI  YCK             +    L+P+  T   L   L   G
Sbjct: 337 TMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVG 396

Query: 588 RRKEAAAVEERCEKINDVPSLA 609
           R ++A A+         +P LA
Sbjct: 397 RLQDAIALFHEMVAHGQIPDLA 418



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 98/516 (18%), Positives = 191/516 (37%), Gaps = 93/516 (18%)

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           +S ++F + S+NF            L+  LS++N         ST  +N +++  AKT K
Sbjct: 33  LSHNRFHSKSLNF----------NTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKT-K 81

Query: 188 NFEAVETFRQVIDE-GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
            +  V +    +D  G  P+  T  ++I    +L +   A  V + +  + ++  +  + 
Sbjct: 82  QYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFT 141

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPD 305
            L+ G     +  +A  L ++M  +G  P       L   + ++G    A   LR M   
Sbjct: 142 TLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSM--- 198

Query: 306 KRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLA 365
                    E G          N     + Y   +      + +    + +S  V   ++
Sbjct: 199 ---------EQG----------NCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGIS 239

Query: 366 DAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHV- 422
              F +T+ +  +C  L  +K   T  +        P    DV     ++  L + G + 
Sbjct: 240 PDIFTYTSLIHSLCN-LCEWKHVTTLLNQMINSKIMP----DVVIFSTVVDALCKEGKIT 294

Query: 423 ---ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF----HDD-------- 467
              ++VD +I +    G+     T   ++D + +  + D A+K F    H+         
Sbjct: 295 EAHDVVDMMIIR----GVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISY 350

Query: 468 RTLCGPISKFKLM-------------------LLYSSLLRTLTKCKRDFDAINVLEEMIF 508
            TL     K + M                   + Y++L+  L    R  DAI +  EM+ 
Sbjct: 351 NTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVA 410

Query: 509 SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY----- 563
            G +PD+ T+  L+ +   +        L   +  + ++PD  ++ ++I   C+      
Sbjct: 411 HGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEA 470

Query: 564 -------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                  LS+  L P+  T  ++   L + G   EA
Sbjct: 471 ARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEA 506



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 98/241 (40%), Gaps = 10/241 (4%)

Query: 77  RSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNV 136
           R    A +  S M     +P+     S +H+L  +    +  H + TL+  + +SK +  
Sbjct: 221 RQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNL---CEWKH-VTTLLNQMINSKIMPD 276

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
            V F  ++      G +       +    R    +  +YN +M  +    +  EAV+ F 
Sbjct: 277 VVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFD 336

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
            ++  G  PN  +Y  +I     + ++D A  +F  +    +   +  Y  L+ G   V 
Sbjct: 337 TMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVG 396

Query: 257 RFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLR-----EMLPDKRIKN 310
           R  +A +L +EM   G+ P  A  R+ L+ + +   +  A   L+      M PD +I  
Sbjct: 397 RLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYT 456

Query: 311 V 311
           +
Sbjct: 457 I 457


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 115/531 (21%), Positives = 209/531 (39%), Gaps = 66/531 (12%)

Query: 81  NADSALSIMEALKSNP--NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV 138
           +AD A  + + L S+P   F H+  T +AL  V A+++R+ E   L+ +  ++ FL    
Sbjct: 37  DADLAWELFQCL-SSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVE 95

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLL-STESYNIVMSVYAKTGKNFEAVETFRQ 197
            +  L+  Y  + + E   +   E  +   +  S +++N+V+    K+GK   A++ F  
Sbjct: 96  TWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFET 155

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
               G   +  TYT +++ L    K+  A+ +   +       T   Y  L+ G   + R
Sbjct: 156 TTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGR 215

Query: 258 FDEAKSLLNEMRDDGKFP------------GRAMRV--ALERMQEM---GFIQGA---NE 297
            +EA  LL ++ D+G  P            G+  R   A +  +EM   G +        
Sbjct: 216 LEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTA 275

Query: 298 FLREMLPDKRIKNVR-----YYEDGSDDD----EDENDDNNSGVRIAYGVQLKPWLDPKA 348
            +R +L   +I             G   D        D      RI   V++   ++ + 
Sbjct: 276 LIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARG 335

Query: 349 LANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPET-----------------AWH 391
           LA     +S  +  L    K      ++ ++ + F +P+T                 A  
Sbjct: 336 LAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAAR 395

Query: 392 FFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY 451
            F     + G   DVY    +++   + G+ +    +   + S        T   +I   
Sbjct: 396 AFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLIS-- 453

Query: 452 GISKK---ADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF 508
           G+ K+     A+L   H     C P S      +YSSL+  L K  +      + +EM  
Sbjct: 454 GLCKRRQLTKASLYFQHMKERGCPPDS-----FVYSSLVDGLCKSGKLEGGCMLFDEMER 508

Query: 509 SGIVPDVQTFSGLMYHF--ALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           SG V + QT + L++H   A + DE +   LF+ +R+ G+ P  Y +  +I
Sbjct: 509 SG-VANSQTRTRLIFHLCKANRVDEAV--SLFNAIRKEGM-PHPYAYNSII 555



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 83/206 (40%), Gaps = 16/206 (7%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G T  +     +L  L + G +E    L+ K+  +G      T   +ID  G  K++  A
Sbjct: 195 GCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEA 254

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
            K F +   L G +      + Y++L+R L +  +   A +V + M   G VPDV T S 
Sbjct: 255 YKLFKE-MALRGLVLD---TVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLST 310

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSN 568
           ++      G      ++F  +   G+ P+  ++  LI   CK             +  + 
Sbjct: 311 MIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAF 370

Query: 569 LMPDAATKELLKKSLWKEGRRKEAAA 594
             PD  T  +L   L K G  + A A
Sbjct: 371 CTPDTITYNILIDGLCKSGDVEAARA 396



 Score = 46.2 bits (108), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 14/167 (8%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK----- 455
           G T D++    ++  LA++  ++    L+ K+ ++G     +T   +++  G+ K     
Sbjct: 160 GCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLN--GLCKMGRLE 217

Query: 456 KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
           +A   L+   D+   C P      ++ Y+SL+  L K KR F+A  + +EM   G+V D 
Sbjct: 218 EAIDLLRKIVDNG--CTPD-----VVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDT 270

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
             ++ L+      G       ++  +   G  PD      +I   CK
Sbjct: 271 VCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCK 317



 Score = 45.8 bits (107), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 92/236 (38%), Gaps = 20/236 (8%)

Query: 372 TTRLVCKVLRHFKSPETAWHFF-CWVAYQPGYTHDVYALEKMLTILARHG-HVELVDRLI 429
           +T  V K+ +  K  + AW  F C  + + G+ H V+    +L + AR   H E  + L 
Sbjct: 24  STDAVVKIFQCLKDADLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLK 83

Query: 430 AKLRSDGMRLP-FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLR 488
            +L +    LP   T  ++I  Y ++++ + A     +     G     K    ++ +L 
Sbjct: 84  NELAT--TFLPDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKT---HNLVLH 138

Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548
            L K  +   A++  E    +G   D+ T++ ++   A     +    L   +  NG  P
Sbjct: 139 GLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTP 198

Query: 549 DAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
               +  L+   CK             + ++   PD  T   L   L KE R  EA
Sbjct: 199 TIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEA 254



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 48/236 (20%), Positives = 93/236 (39%), Gaps = 6/236 (2%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVT-----HALRSAPNADSALSIMEALKSNP 96
           LI  +  A +   ++S+   +  +   P +VT       L  A    +A+ I +++++  
Sbjct: 276 LIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEAR- 334

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
             + N+    AL   L K+++      ++  +  +     ++ +  L+     SGD+E  
Sbjct: 335 GLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAA 394

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
            + ++E  +        +YNI++S + K G    A   F  +      PN  TY  +I  
Sbjct: 395 RAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISG 454

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           L    +L  A   F  +        S  Y  LV+G     + +    L +EM   G
Sbjct: 455 LCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSG 510


>gi|225423724|ref|XP_002276864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Vitis vinifera]
          Length = 587

 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 100/221 (45%), Gaps = 24/221 (10%)

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA--A 460
           T D YAL  +L      G +E  + + A++R  G   P S +       G+ K  D   A
Sbjct: 202 TEDTYAL--LLKAYCTSGLLEKAEAVFAEMRKYG--FPPSAVVYNAYIDGLMKGGDTQKA 257

Query: 461 LKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           ++ F    R  C P +       Y+ L+    K  + + A+ V  EM      P++ TF+
Sbjct: 258 VEIFERMKRDRCQPSTA-----TYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFT 312

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNS 567
            L+  FA +G  +  +++F  +++ G+EPD Y +  L++AY +             + + 
Sbjct: 313 ALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHM 372

Query: 568 NLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
              PD A+  ++  +  + G  ++A AV E  +++   P++
Sbjct: 373 GCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTM 413



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 87/410 (21%), Positives = 161/410 (39%), Gaps = 51/410 (12%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L++ Y TSG LE   + + E R+     S   YN  +    K G   +AVE F ++  + 
Sbjct: 209 LLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDR 268

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P++ TYT++I       K   AL+VF  +   + K     +  LV  F      ++A+
Sbjct: 269 CQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAE 328

Query: 263 SLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREML-----PDKRIKNV---RY 313
            +  ++++ G  P   A    +E     GF  GA E    M      PD+   N+    Y
Sbjct: 329 EIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAY 388

Query: 314 YEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTT 373
              G  +D           +  + V  +  + P   ++ L      ++S  + A  V   
Sbjct: 389 GRAGLHED----------AQAVFEVMKRLGITPTMKSHML------LLSAYSRAGKVAKC 432

Query: 374 RLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
             +   +                 ++ G   D + L  ML +  R G  E ++ ++  + 
Sbjct: 433 EEIVNQM-----------------HKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAME 475

Query: 434 SDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKF-KLMLLYSSLLRTLTK 492
                   ST  ++I+ YG      A   A  ++     P       ++ ++S +   ++
Sbjct: 476 KGPYPADISTYNILINIYG-----RAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSR 530

Query: 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
            K+    + V EEMI +G  PD  T   L+   +  GD+  +Q++ +++R
Sbjct: 531 RKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACS-NGDQ--IQEVTTVIR 577



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/201 (18%), Positives = 84/201 (41%), Gaps = 1/201 (0%)

Query: 75  ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFL 134
            L    +   A+ I E +K +     + +T   L  +  K+ +++    +  ++ S K  
Sbjct: 247 GLMKGGDTQKAVEIFERMKRD-RCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCK 305

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
                F  L+  ++  G  E     + + ++        +YN +M  Y++ G  + A E 
Sbjct: 306 PNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEI 365

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
           F  +   G  P+  +Y +M++     G  + A  VF  +  + I  T K +++L+  +  
Sbjct: 366 FSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSR 425

Query: 255 VERFDEAKSLLNEMRDDGKFP 275
             +  + + ++N+M   G  P
Sbjct: 426 AGKVAKCEEIVNQMHKSGIKP 446


>gi|224143015|ref|XP_002324819.1| predicted protein [Populus trichocarpa]
 gi|222866253|gb|EEF03384.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 5/163 (3%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D      ++   +  G++E       K++ +GM+   ST   +I  YGI+ K + +
Sbjct: 78  GMNPDSIFFNAVINAFSESGNMESAMETFWKMQENGMKPTTSTYNTLIKGYGIAGKPEES 137

Query: 461 LKAFHDDRTLCGPISKFKLML-LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           +K       L       K  L  Y+ L+R     KR  +A NV+ +MI SGI PDV T++
Sbjct: 138 VKLLE----LMSQEGNVKPNLRTYNVLVRAWCNKKRITEAWNVVYKMIASGIQPDVVTYN 193

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            +   +A +G     + +   ++ NGV+P+     +++  YCK
Sbjct: 194 TIATAYAQKGALDQAEGVILEMQNNGVQPNERTCGIIMSGYCK 236



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 78/363 (21%), Positives = 158/363 (43%), Gaps = 43/363 (11%)

Query: 208 RTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNE 267
           R+ T ++  LV  GK   A  +F +L     K +   Y  L+      +RFD   S++++
Sbjct: 14  RSRTKLMNFLVEKGKPQEAESIFYSLIEGGHKPSLISYTTLLAALTMQKRFDSIYSIISQ 73

Query: 268 MRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDEND 326
           + ++G  P        +    E G ++ A E   +M  +        Y            
Sbjct: 74  VEENGMNPDSIFFNAVINAFSESGNMESAMETFWKMQENGMKPTTSTY------------ 121

Query: 327 DNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAK-FVWTTRLVCKVLRHFKS 385
             N+ ++  YG+  KP    K L         E++S   + K  + T  ++ +   + K 
Sbjct: 122 --NTLIK-GYGIAGKPEESVKLL---------ELMSQEGNVKPNLRTYNVLVRAWCNKKR 169

Query: 386 PETAWHFFCWVAYQ---PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFS 442
              AW+    V Y+    G   DV     + T  A+ G ++  + +I +++++G++    
Sbjct: 170 ITEAWN----VVYKMIASGIQPDVVTYNTIATAYAQKGALDQAEGVILEMQNNGVQPNER 225

Query: 443 TIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKC-KRDF--DA 499
           T  +I+  Y    +   AL+  +  + L         +++++SL++       RD   + 
Sbjct: 226 TCGIIMSGYCKEGRIREALRFAYRMKEL----GIHPNLVIFNSLIKGFVAIMDRDGVDEV 281

Query: 500 INVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
           +N++EE    G+ PDV TFS +M  ++  G  +  +++F  + + G+EPDA+ + +L + 
Sbjct: 282 LNLMEEF---GVKPDVITFSTIMNAWSTAGFMEKCREIFDDMVKAGIEPDAHAYSILAKG 338

Query: 560 YCK 562
           Y +
Sbjct: 339 YVR 341



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 78/169 (46%), Gaps = 1/169 (0%)

Query: 108 LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA 167
           L   L   +R   + ++I  +  +     S+ F  ++  +S SG++E  + T+ + ++  
Sbjct: 54  LLAALTMQKRFDSIYSIISQVEENGMNPDSIFFNAVINAFSESGNMESAMETFWKMQENG 113

Query: 168 KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI-PNSRTYTVMIEHLVNLGKLDSA 226
              +T +YN ++  Y   GK  E+V+    +  EG + PN RTY V++    N  ++  A
Sbjct: 114 MKPTTSTYNTLIKGYGIAGKPEESVKLLELMSQEGNVKPNLRTYNVLVRAWCNKKRITEA 173

Query: 227 LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             V   +    I+     Y  +   +      D+A+ ++ EM+++G  P
Sbjct: 174 WNVVYKMIASGIQPDVVTYNTIATAYAQKGALDQAEGVILEMQNNGVQP 222



 Score = 45.8 bits (107), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 72/163 (44%), Gaps = 1/163 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + F  +M  +ST+G +E     +++  +        +Y+I+   Y +  +  +A E    
Sbjct: 295 ITFSTIMNAWSTAGFMEKCREIFDDMVKAGIEPDAHAYSILAKGYVRAQEPEKAEELLTT 354

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +I  G  PN   +T +I    + GK+D A+ VF  +    I    K +  L+ GF    +
Sbjct: 355 MIKSGFQPNVVIFTTVISGWCSAGKMDYAVRVFDKMCQRGISPNLKTFETLIWGFAEARQ 414

Query: 258 FDEAKSLLNEMRDDGKFPGRA-MRVALERMQEMGFIQGANEFL 299
             +A+ +L  M +    P ++ M +  E  +  G  + AN  L
Sbjct: 415 PWKAEEILQIMTEFEVQPEKSTMLLVAEAWRATGMTKEANRLL 457



 Score = 39.3 bits (90), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 1/131 (0%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN + + YA+ G   +A     ++ + G  PN RT  +++      G++  AL     +
Sbjct: 191 TYNTIATAYAQKGALDQAEGVILEMQNNGVQPNERTCGIIMSGYCKEGRIREALRFAYRM 250

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
             + I      +  L++GFV +   D    +LN M + G  P        +      GF+
Sbjct: 251 KELGIHPNLVIFNSLIKGFVAIMDRDGVDEVLNLMEEFGVKPDVITFSTIMNAWSTAGFM 310

Query: 293 QGANEFLREML 303
           +   E   +M+
Sbjct: 311 EKCREIFDDMV 321


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 103/466 (22%), Positives = 186/466 (39%), Gaps = 41/466 (8%)

Query: 126 GDISSSKFLNVS----------VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
           GD+ +S+ L V           V + +L+  Y   G LE V S +NE +    +    +Y
Sbjct: 303 GDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITY 362

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           N +++ Y K  K   A E F ++ + G  PN  TY+ +I+     G +  A+++F  +  
Sbjct: 363 NGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRR 422

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQG 294
             +      Y  L++         EA  LLN+M   G K         L+ + + G +  
Sbjct: 423 TGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIE 482

Query: 295 ANEFLREMLPDKRIKNVRYY-------------EDGSDDDEDENDDNNSGVRIAYGVQLK 341
           A E  R ML D    N + Y             ED     +   + N     I YG  + 
Sbjct: 483 AEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIW 542

Query: 342 PWLDPKALANT---LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAY 398
                + L  T   L+E     +S    A  V +T ++    +  KS + A +FF     
Sbjct: 543 GHCSQRKLEETKLILEEMKSRGIS----ANPVISTTIIDAYFKAGKSSD-ALNFF-QEMQ 596

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
             G    +     ++  L + G VEL      ++ S G++   +    +ID    +   +
Sbjct: 597 DVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIE 656

Query: 459 AALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
           +A K F +   R +   I+ F      ++L+    K     +A+ ++  M    I  D+ 
Sbjct: 657 SAKKLFDEMQCRGMTPDITAF------TALIDGNLKHGNLQEALVLISRMTELAIEFDLH 710

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            ++ L+  F+  G+    +K F+ + + G+ P+  +   L++ Y K
Sbjct: 711 VYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYK 756



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 18/208 (8%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G    V+    M+  L + G +E   RL  ++R  G+     T   +ID YG     +  
Sbjct: 284 GIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEV 343

Query: 461 LKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
              F++ + + C P      ++ Y+ L+    K ++   A     EM  +G+ P+V T+S
Sbjct: 344 ASLFNEMKDVGCVPD-----IITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYS 398

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNS 567
            L+  F  +G  +   KLF  +R+ G+ P+ + +  LI A CK             +  +
Sbjct: 399 TLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQA 458

Query: 568 NLMPDAATKELLKKSLWKEGRRKEAAAV 595
            +  +  T   L   L K GR  EA  V
Sbjct: 459 GVKLNIVTYTALLDGLCKAGRMIEAEEV 486



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 71/178 (39%)

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
           N     N  T   L     K         L  D+  +  L     + +L+     +G+L 
Sbjct: 387 NNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLT 446

Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
                 N+  Q    L+  +Y  ++    K G+  EA E FR ++ +G  PN + YT ++
Sbjct: 447 EAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALV 506

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
              +   +++ A+++   +    IK     Y  ++ G     + +E K +L EM+  G
Sbjct: 507 HGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRG 564



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 58/125 (46%)

Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
           G LE     ++  R    L    S N ++   +K+G      + F  +I  G  P+  TY
Sbjct: 233 GLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTY 292

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
            VMI++L   G L+++  +F  +  M +      Y  L++G+  V   +E  SL NEM+D
Sbjct: 293 NVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKD 352

Query: 271 DGKFP 275
            G  P
Sbjct: 353 VGCVP 357



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 4/194 (2%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           A+   S M   ++ P        LH L+    KS     ++    D+  +        + 
Sbjct: 238 ANECFSRMRNFRTLPKARSCNFLLHRLS----KSGNGQLVRKFFNDMIGAGIAPSVFTYN 293

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            ++ +    GDLE     + + R+        +YN ++  Y K G   E    F ++ D 
Sbjct: 294 VMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDV 353

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G +P+  TY  +I       K+  A E FS +    +K     Y  L++ F        A
Sbjct: 354 GCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGA 413

Query: 262 KSLLNEMRDDGKFP 275
             L  +MR  G  P
Sbjct: 414 IKLFVDMRRTGLLP 427



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 90/222 (40%), Gaps = 7/222 (3%)

Query: 61  LLNDRL-----LDPFIVTHALRSAPNADSALSIMEALKS--NPNFSHNQSTLHALATVLA 113
           LLND L     L+    T  L     A   +   E  +S      S NQ    AL     
Sbjct: 451 LLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYI 510

Query: 114 KSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE 173
           K++R  +   ++  ++        + + +++  + +   LE       E + R    +  
Sbjct: 511 KAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPV 570

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
               ++  Y K GK+ +A+  F+++ D G      TY V+I+ L   G ++ A++ F  +
Sbjct: 571 ISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRM 630

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             + ++     Y  L++G       + AK L +EM+  G  P
Sbjct: 631 LSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTP 672



 Score = 46.6 bits (109), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 103/250 (41%), Gaps = 42/250 (16%)

Query: 343 WLDPKALANTL--DEWSPEVVSLLADAKF--VWTTRLVCKVLRHFKSPETAWHFFCWVAY 398
           +LD  +L   +  D W+   + +L D+    +W ++++   L   + P+ A  FF W   
Sbjct: 99  YLDIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVSKIL---LGLREDPKLALKFFKWAGS 155

Query: 399 QPGYTH--DVYALEKMLTILAR---HGHVELVDRLIAKLRSDGMRLP------------- 440
           Q G+ H  + Y +   L   AR     H + V  +I   R D M  P             
Sbjct: 156 QVGFRHTTESYCIIVHLVFRARMYTDAH-DTVKEVIMNSRMD-MGFPVCNIFDMLWSTRN 213

Query: 441 --------FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK 492
                   F  +  +    G+ ++A+       + RTL  P ++       + LL  L+K
Sbjct: 214 ICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTL--PKAR-----SCNFLLHRLSK 266

Query: 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYM 552
                       +MI +GI P V T++ ++ +   +GD +  ++LF  +R+ G+ PD   
Sbjct: 267 SGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVT 326

Query: 553 FKVLIQAYCK 562
           +  LI  Y K
Sbjct: 327 YNSLIDGYGK 336



 Score = 45.4 bits (106), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 87/412 (21%), Positives = 161/412 (39%), Gaps = 49/412 (11%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           +TESY I++ +  +     +A +T ++VI      NSR              +D    V 
Sbjct: 162 TTESYCIIVHLVFRARMYTDAHDTVKEVI-----MNSR--------------MDMGFPVC 202

Query: 231 SALPLMRIKRT-----SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALE 284
           +   ++   R      S  + +L   FV +   +EA    + MR+    P  R+    L 
Sbjct: 203 NIFDMLWSTRNICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLH 262

Query: 285 RMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPW- 343
           R+ + G  Q   +F  +M+      +V  Y    D    E D  NS  R  + VQ++   
Sbjct: 263 RLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENS--RRLF-VQMREMG 319

Query: 344 LDPKALA--NTLDEWSP-----EVVSLLADAKFVW------TTRLVCKVLRHFKSPETAW 390
           L P  +   + +D +       EV SL  + K V       T   +      F+    A+
Sbjct: 320 LSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAF 379

Query: 391 HFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF 450
            +F  +    G   +V     ++    + G ++   +L   +R  G+     T   +ID 
Sbjct: 380 EYFSEMK-NNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDA 438

Query: 451 YGISKKADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFS 509
              +     A K  +D        +  KL ++ Y++LL  L K  R  +A  V   M+  
Sbjct: 439 NCKAGNLTEAWKLLNDMLQ-----AGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKD 493

Query: 510 GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           GI P+ Q ++ L++ +      +   K+   + +  ++PD  ++  +I  +C
Sbjct: 494 GISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHC 545


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 104/243 (42%), Gaps = 14/243 (5%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHA--------LRSAPNADSALSIMEALK 93
           LI+++        + +L +++    + P +VT++        +    NA      M  + 
Sbjct: 226 LINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMG 285

Query: 94  SNPN-FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD 152
            NPN +S+N      +   L K +R  E   L+ ++     +  +V + +L+     SG 
Sbjct: 286 VNPNVYSYN-----IMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGR 340

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
           +   L+  NE   R +     +Y  ++    K     +A   F ++ + G  P   TYT 
Sbjct: 341 ITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTA 400

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +I+ L   G+L +A E+F  L +         Y +++ G      FDEA ++ ++M D+G
Sbjct: 401 LIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNG 460

Query: 273 KFP 275
             P
Sbjct: 461 CIP 463



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 103/256 (40%), Gaps = 55/256 (21%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
            PG    VY    ++  L + G+V+    L+A +  +G++    T   ++D Y +  +  
Sbjct: 217 NPG----VYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQ 272

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
            A + FH    +    + +     Y+ ++  L KCKR  +A+N+L EM+   +VPD  T+
Sbjct: 273 NAKQIFHAMVQMGVNPNVYS----YNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTY 328

Query: 519 SGL-------------------MYHF--------------ALQGDEKI--VQKLFSMVRQ 543
           + L                   M+H               AL  ++ +     LF  +++
Sbjct: 329 NSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKE 388

Query: 544 NGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKE 591
            G++P  Y +  LI   CK            +L       D  T  ++   L KEG   E
Sbjct: 389 RGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDE 448

Query: 592 AAAVEERCEKINDVPS 607
           A A++ + E    +P+
Sbjct: 449 ALAIKSKMEDNGCIPN 464



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 1/192 (0%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L K +  +E   L  ++ +      ++ +  L+  +   G L    S  +E   +     
Sbjct: 160 LCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPG 219

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
              YNI+++   K G   EA      +  EG  P   TY+ +++    +G++ +A ++F 
Sbjct: 220 VYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFH 279

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMG 290
           A+  M +      Y I++ G    +R DEA +LL EM      P      +L + + + G
Sbjct: 280 AMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSG 339

Query: 291 FIQGANEFLREM 302
            I  A   + EM
Sbjct: 340 RITSALNLMNEM 351



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 100/497 (20%), Positives = 193/497 (38%), Gaps = 58/497 (11%)

Query: 120 ELKTLIGDISSSKFLNVS---VNFMNL---MQWYSTSGDLELVLSTWNEYRQRAKLLSTE 173
           ++K  +  IS SK + V     NF+ L   +  +   G +    S   +  +      T 
Sbjct: 22  KMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTI 81

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           + N +M      G+  +++    +V+ +G   +  +Y  ++  L  +G+   A+++   +
Sbjct: 82  TLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMI 141

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFI 292
                +     Y  +++G    +  +EA  L +EM   G FP       L      +G +
Sbjct: 142 EDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQL 201

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWL---DPKAL 349
            GA   L EM+    +KN+                 N GV I Y + +       + K  
Sbjct: 202 MGAFSLLDEMI----LKNI-----------------NPGVYI-YNILINALCKEGNVKEA 239

Query: 350 ANTLDEWSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY 407
            N L   + E +         ++T +   C V    ++ +  +H       Q G   +VY
Sbjct: 240 KNLLAVMTKEGIK---PGVVTYSTLMDGYCLV-GEVQNAKQIFH----AMVQMGVNPNVY 291

Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDD 467
           +   M+  L +   V+    L+ ++    M     T   +ID    S +  +AL   ++ 
Sbjct: 292 SYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEM 351

Query: 468 RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
                P      ++ Y+SLL  L K +    A  +  +M   GI P + T++ L+     
Sbjct: 352 HHRGQPAD----VVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCK 407

Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAAT 575
            G  K  Q+LF  +   G   D + + V+I   CK             + ++  +P+A T
Sbjct: 408 GGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVT 467

Query: 576 KELLKKSLWKEGRRKEA 592
            E++ +SL+++    +A
Sbjct: 468 FEIIIRSLFEKDENDKA 484


>gi|357515141|ref|XP_003627859.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355521881|gb|AET02335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 731

 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 104/246 (42%), Gaps = 38/246 (15%)

Query: 372 TTRLVCKVLRHFKS----PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDR 427
           T+  + +V+ H K     P   +HFF W    P YTH +++   M+ +L +H H +   +
Sbjct: 40  TSTTIHQVILHLKQHRYEPFFIFHFFKWAQSIPHYTHSLHSSWSMIHMLTKHRHFKTAQQ 99

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLL 487
           ++ K+            R I+     S     +L   HDD  +   +         S ++
Sbjct: 100 VLDKMAQ----------REILS----SPSVLTSLVRIHDDPEVNSHV--------LSWIV 137

Query: 488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE 547
               K K   DA+ V E+M    + P +   + LM      G   +V K++  + Q+GV 
Sbjct: 138 IHYAKSKMTHDAVQVFEQMSLCNLKPHLHACTVLMNSLLKDGITSMVWKVYKRMVQDGVV 197

Query: 548 PDAYMFKVLIQAYCK--------YLSNS----NLMPDAATKELLKKSLWKEGRRKEAAAV 595
           P+ Y++  LI A  K        ++ N      ++PD  T   L     K+G   EA +V
Sbjct: 198 PNIYVYNCLIHACSKSRDVERAEFILNEMEVKGVVPDIFTYNTLIALYCKKGLHYEALSV 257

Query: 596 EERCEK 601
           +++ E+
Sbjct: 258 QDKMER 263



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 11/165 (6%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+   S S D+E      NE   +  +    +YN ++++Y K G ++EA+    ++  EG
Sbjct: 206 LIHACSKSRDVERAEFILNEMEVKGVVPDIFTYNTLIALYCKKGLHYEALSVQDKMEREG 265

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFS----ALPLMRIKRTSKQYLILVEGFVGVERF 258
              +  +Y  +I      GK+  A+ +F     A+P          Y  L++G+     F
Sbjct: 266 INLDIVSYNSLIYGFCKEGKMREAMRMFGEIKDAIP------NHVTYTTLIDGYCKANEF 319

Query: 259 DEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
           +EA  L   M   G +PG       L ++   G I+ AN+ L EM
Sbjct: 320 EEALRLREMMVAKGLYPGVVTYNSILRKLCSDGRIRDANKLLHEM 364



 Score = 43.5 bits (101), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 86/223 (38%), Gaps = 1/223 (0%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T +++   L    R  +   L+ ++S  K    SV    L+  Y   GDL   L    + 
Sbjct: 340 TYNSILRKLCSDGRIRDANKLLHEMSERKVQADSVTCNTLINAYCKIGDLNSALKFKTKM 399

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
            +     ++ +Y  ++  + KT +   A E    ++D G  PN RTY+ +++        
Sbjct: 400 LEAGLTPNSFTYKALIHGFCKTSELESAKELLFGMLDAGFSPNYRTYSWIVDSYCKKDNT 459

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
           D+ L +               Y  L+     +ER + A+ LL  M   G      +  +L
Sbjct: 460 DAVLALPDEFLSKGFCLNISLYRALIRRLCKIERIECAEKLLYHMEGKGISGDSVIYTSL 519

Query: 284 E-RMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDEN 325
                + G    A++ L EM   + +  V+ Y   S  D  +N
Sbjct: 520 AFSYWKSGNTNAASDMLEEMARRRLMITVKIYRCFSALDASQN 562



 Score = 42.4 bits (98), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 92/214 (42%), Gaps = 17/214 (7%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP-FSTIRLIIDFYGISKKADA 459
           G   D+ +   ++    + G +    R+  +++     +P   T   +ID Y  + + + 
Sbjct: 265 GINLDIVSYNSLIYGFCKEGKMREAMRMFGEIKD---AIPNHVTYTTLIDGYCKANEFEE 321

Query: 460 ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           AL+     R +      +  ++ Y+S+LR L    R  DA  +L EM    +  D  T +
Sbjct: 322 ALRL----REMMVAKGLYPGVVTYNSILRKLCSDGRIRDANKLLHEMSERKVQADSVTCN 377

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELL 579
            L+  +   GD     K  + + + G+ P+++ +K LI  +CK    S L    + KELL
Sbjct: 378 TLINAYCKIGDLNSALKFKTKMLEAGLTPNSFTYKALIHGFCK---TSEL---ESAKELL 431

Query: 580 KKSL---WKEGRRKEAAAVEERCEKINDVPSLAL 610
              L   +    R  +  V+  C+K N    LAL
Sbjct: 432 FGMLDAGFSPNYRTYSWIVDSYCKKDNTDAVLAL 465



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 71/165 (43%), Gaps = 12/165 (7%)

Query: 401 GYTHDVYALEKMLTILARHG-HVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK--KA 457
           G   D++    ++ +  + G H E +  +  K+  +G+ L   +   +I  YG  K  K 
Sbjct: 230 GVVPDIFTYNTLIALYCKKGLHYEALS-VQDKMEREGINLDIVSYNSLI--YGFCKEGKM 286

Query: 458 DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
             A++ F + +            + Y++L+    K     +A+ + E M+  G+ P V T
Sbjct: 287 REAMRMFGEIK------DAIPNHVTYTTLIDGYCKANEFEEALRLREMMVAKGLYPGVVT 340

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           ++ ++      G  +   KL   + +  V+ D+     LI AYCK
Sbjct: 341 YNSILRKLCSDGRIRDANKLLHEMSERKVQADSVTCNTLINAYCK 385


>gi|254939549|ref|NP_001157212.1| pentatricopeptide repeat10 [Zea mays]
 gi|218684531|gb|ACL01094.1| chloroplast pentatricopeptide repeat protein 10 [Zea mays]
 gi|223948163|gb|ACN28165.1| unknown [Zea mays]
 gi|413943497|gb|AFW76146.1| pentatricopeptide repeat10 [Zea mays]
          Length = 786

 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 83/431 (19%), Positives = 152/431 (35%), Gaps = 78/431 (18%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF-EAVETFRQV 198
           +  ++   S +G  E  L  + E R++    +  +YN+V+ VY + G+++   V    ++
Sbjct: 177 YTTVLHALSRAGRYERALELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEM 236

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
              G  P+  T + +I      G +D A+  F  L           Y  L++ F     +
Sbjct: 237 RAAGVEPDGFTASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNY 296

Query: 259 DEAKSLLNEMRDDGKFPGRAMRVALERM-QEMGFIQGANEFLREM-----LPDKRIKNVR 312
            EA  +L EM  +G  P       L       GF + A   L  M     LP+    N  
Sbjct: 297 TEALRVLGEMEQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMASKGLLPNAFTYNTV 356

Query: 313 YYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWT 372
               G+    DE             + L   +        ++ ++  +  L   ++F   
Sbjct: 357 MTAYGNVGKVDE------------ALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVM 404

Query: 373 TRLVCKVLRHFKSPE-TAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAK 431
             ++ ++ R   +P    W+                    ML +  + G  + V R++  
Sbjct: 405 LEMLGEMSRSGCTPNRVTWN-------------------TMLAVCGKRGMEDYVTRVLEG 445

Query: 432 LRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLT 491
           +RS G+ L   T   +I  YG                                       
Sbjct: 446 MRSCGVELSRDTYNTLIAAYG--------------------------------------- 466

Query: 492 KCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAY 551
           +C    +A  +  EM  +G  P + T++ L+   + QGD    Q + S +R  G +P+  
Sbjct: 467 RCGSRTNAFKMYNEMTSAGFTPCITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQ 526

Query: 552 MFKVLIQAYCK 562
            + +L+Q Y K
Sbjct: 527 SYSLLLQCYAK 537



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 95/225 (42%), Gaps = 23/225 (10%)

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
           PG   DV A   +L  L+R G  E    L A+LR  G+     T  +++D YG   ++  
Sbjct: 168 PGSRLDVRAYTTVLHALSRAGRYERALELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWP 227

Query: 460 ALKAFHDDRTLCG-PISKFKLMLLYSSLLRTLTKCKRDF---DAINVLEEMIFSGIVPDV 515
            + A  D+    G     F    +       +  C RD    +A+   E++   G  P V
Sbjct: 228 RIVALLDEMRAAGVEPDGFTASTV-------IAACCRDGLVDEAVAFFEDLKARGHAPCV 280

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------Y 563
            T++ L+  F   G+     ++   + QNG +PDA  +  L   Y +             
Sbjct: 281 VTYNALLQVFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYARAGFFEEAARCLDT 340

Query: 564 LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
           +++  L+P+A T   +  +    G+  EA A+ ++ +K   VP++
Sbjct: 341 MASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNV 385



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 106/579 (18%), Positives = 212/579 (36%), Gaps = 63/579 (10%)

Query: 46  IRLAVRSNSSNSLSSLLNDRLLDP---------FIVTHALRSAPNADSALSIMEALKSNP 96
           +R   R    +++ +LL++  L P           V HAL  A   + AL +   L+   
Sbjct: 145 VRALGREGQHDAVCALLDETPLPPGSRLDVRAYTTVLHALSRAGRYERALELFAELRRQ- 203

Query: 97  NFSHNQSTLHALATVLAKSQRN-HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLEL 155
             +    T + +  V  +  R+   +  L+ ++ ++           ++      G ++ 
Sbjct: 204 GVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDGFTASTVIAACCRDGLVDE 263

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
            ++ + + + R       +YN ++ V+ K G   EA+    ++   G  P++ TY  +  
Sbjct: 264 AVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELAG 323

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                G  + A      +    +   +  Y  ++  +  V + DEA +L ++M+  G  P
Sbjct: 324 TYARAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVP 383

Query: 276 G-RAMRVALERMQEMGFIQGANEFLREM-----LPDKRIKNVRYYEDGSDDDEDENDDNN 329
                 + L  + +        E L EM      P++   N      G    ED      
Sbjct: 384 NVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVL 443

Query: 330 SGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETA 389
            G+R + GV+L                S +  + L  A     +R      + +    +A
Sbjct: 444 EGMR-SCGVEL----------------SRDTYNTLIAAYGRCGSRT--NAFKMYNEMTSA 484

Query: 390 WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID 449
               C   Y             +L +L+R G       +++K+R+ G +    +  L++ 
Sbjct: 485 GFTPCITTYN-----------ALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQ 533

Query: 450 FYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS 509
            Y       A + A  ++    G +  F   ++  +L+    KC+R        +E+   
Sbjct: 534 CYAKGGNV-AGIAAIENEVYGSGAV--FPSWVILRTLVIANFKCRRLDGMETAFQEVKAR 590

Query: 510 GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------ 563
           G  PD+  F+ ++  +A  G      ++F  ++++G+ PD   +  L+  Y K       
Sbjct: 591 GYNPDLVIFNSMLSIYAKNGMYSKATEVFDSIKRSGLSPDLITYNSLMDMYAKCSESWEA 650

Query: 564 ------LSNSNLM-PDAATKELLKKSLWKEGRRKEAAAV 595
                 L  S  M PD  +   +     K+G  KEA  V
Sbjct: 651 EKILNQLKCSQTMKPDVVSYNTVINGFCKQGLVKEAQRV 689



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 95/511 (18%), Positives = 194/511 (37%), Gaps = 42/511 (8%)

Query: 62  LNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQ 116
           L  R   P +VT+         A N   AL ++  ++ N     +  T + LA   A++ 
Sbjct: 271 LKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQN-GCQPDAVTYNELAGTYARAG 329

Query: 117 RNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYN 176
              E    +  ++S   L  +  +  +M  Y   G ++  L+ +++ ++   + +  +YN
Sbjct: 330 FFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYN 389

Query: 177 IVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM 236
           +V+ +  K  +    +E   ++   G  PN  T+  M+      G  D    V   +   
Sbjct: 390 LVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSC 449

Query: 237 RIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGAN 296
            ++ +   Y  L+  +        A  + NEM   G  P      AL  +      QG  
Sbjct: 450 GVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFTPCITTYNALLNVLSR---QGDW 506

Query: 297 EFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEW 356
              + ++   R K  +  E                   +Y + L+ +     +A  +   
Sbjct: 507 STAQSIVSKMRTKGFKPNEQ------------------SYSLLLQCYAKGGNVAG-IAAI 547

Query: 357 SPEVVSLLADAKFVWTTRLVCKVLRHFK-----SPETAWHFFCWVAYQPGYTHDVYALEK 411
             EV    + A F     L   V+ +FK       ETA+       Y P    D+     
Sbjct: 548 ENEVYG--SGAVFPSWVILRTLVIANFKCRRLDGMETAFQEVKARGYNP----DLVIFNS 601

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           ML+I A++G       +   ++  G+     T   ++D Y    ++  A K  +  +  C
Sbjct: 602 MLSIYAKNGMYSKATEVFDSIKRSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLK--C 659

Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
               K  + + Y++++    K     +A  VL EM+  G+ P   T+  L+  ++     
Sbjct: 660 SQTMKPDV-VSYNTVINGFCKQGLVKEAQRVLSEMVADGMAPCAVTYHTLVGGYSSLEMF 718

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
              +++   + Q+G++P    ++ ++++YC+
Sbjct: 719 SEAREVIGYMVQHGLKPMELTYRRVVESYCR 749



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 1/115 (0%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SYN V++ + K G   EA     +++ +G  P + TY  ++    +L     A EV   +
Sbjct: 669 SYNTVINGFCKQGLVKEAQRVLSEMVADGMAPCAVTYHTLVGGYSSLEMFSEAREVIGYM 728

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD-DGKFPGRAMRVALERMQ 287
               +K     Y  +VE +   +RF+EA+  L+E+ + D  F  +A+   +E  Q
Sbjct: 729 VQHGLKPMELTYRRVVESYCRAKRFEEARGFLSEVSETDLDFDKKALEAYIEDAQ 783


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 98/212 (46%), Gaps = 7/212 (3%)

Query: 64  DRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT 123
           + L++ +++ + ++ A +  +A+S+M         + +  T   L     KS+   E   
Sbjct: 556 NTLMNGYLLVYEVKKAQHVFNAMSLM-------GVTPDVHTYTILINGFCKSKMVDEALN 608

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L  ++     +  +V + +L+     SG +  V    +E R R +     +YN ++    
Sbjct: 609 LFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLC 668

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           K G   +A+  F ++ D+G  PN+ T+T++++ L   G+L  A EVF  L          
Sbjct: 669 KNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVY 728

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            Y +++ G       +EA ++L++M ++G  P
Sbjct: 729 IYNVMIYGHCKQGLLEEALTMLSKMEENGCIP 760



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 90/424 (21%), Positives = 166/424 (39%), Gaps = 30/424 (7%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           +V    L++     G ++  L   ++   +   L+  SY  +++   K G    A++  R
Sbjct: 377 TVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLR 436

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           ++      PN   Y+ +I+ L     +  A  +FS + +  I      Y  L+ GF  V 
Sbjct: 437 KIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVG 496

Query: 257 RFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
           +  EA  LLNEM      P  R   + ++ + + G ++ A   L  ML      +V  Y 
Sbjct: 497 KLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTY- 555

Query: 316 DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL 375
                     +   +G  + Y V+    +     A +L   +P+V +          +++
Sbjct: 556 ----------NTLMNGYLLVYEVKKAQHVFN---AMSLMGVTPDVHTYTILINGFCKSKM 602

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           V + L  FK             +Q     D      ++  L + G +  V  LI ++R  
Sbjct: 603 VDEALNLFKE-----------MHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDR 651

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR 495
           G      T   +ID    +   D A+  F+  +      + F     ++ LL  L K  R
Sbjct: 652 GQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFT----FTILLDGLCKGGR 707

Query: 496 DFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV 555
             DA  V ++++  G   DV  ++ ++Y    QG  +    + S + +NG  P+A  F +
Sbjct: 708 LKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDI 767

Query: 556 LIQA 559
           +I A
Sbjct: 768 IINA 771



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 84/425 (19%), Positives = 168/425 (39%), Gaps = 58/425 (13%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y+ ++  +   GK  EA+     ++ +   PN  TY ++++ L   GK+  A  V + +
Sbjct: 170 TYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVM 229

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFI 292
               +K     Y  L++G+  V    +A+ + N M   G  P   +  + +    ++  +
Sbjct: 230 LKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRV 289

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
             A    +EM+  +    +++  +   D   +    ++ V +++ ++LK  + P      
Sbjct: 290 DKALNLFKEMILSRFPPIIQF--NKILDSFAKMKHYSTAVSLSHRLELK-GIQPD----- 341

Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
                            ++T  ++     H       +     +  + GY      L  +
Sbjct: 342 -----------------LFTLNILINCFCHMGQITFGFSVLAKI-LKRGYPPSTVTLNTL 383

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD--AALKAFHDDRTL 470
           +  L   G V+       KL + G +L   +   +I+  G+ K  D   A+K     R +
Sbjct: 384 IKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLIN--GVCKIGDTRGAIKLL---RKI 438

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
            G ++K  + + YS+++  L K +   +A  +  EM   GI  DV T+S L+Y F + G 
Sbjct: 439 DGRLTKPNVEM-YSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGK 497

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRK 590
            K    L + +    + PD   + +L+ A                       L KEG+ K
Sbjct: 498 LKEAIGLLNEMVLKTINPDVRTYTILVDA-----------------------LGKEGKVK 534

Query: 591 EAAAV 595
           EA +V
Sbjct: 535 EAKSV 539



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 12/118 (10%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+  L K  +  +A +VL  M+ + + PDV T++ LM  + L  + K  Q +F+ + 
Sbjct: 520 YTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMS 579

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGR 588
             GV PD + + +LI  +CK             +   N++PD  T   L   L K GR
Sbjct: 580 LMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGR 637



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 72/182 (39%), Gaps = 4/182 (2%)

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
           + PN     + + AL     K Q   E   L  +++        V +  L+  +   G L
Sbjct: 443 TKPNVEMYSTIIDALC----KYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKL 498

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           +  +   NE   +       +Y I++    K GK  EA      ++     P+  TY  +
Sbjct: 499 KEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTL 558

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           +   + + ++  A  VF+A+ LM +      Y IL+ GF   +  DEA +L  EM     
Sbjct: 559 MNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNM 618

Query: 274 FP 275
            P
Sbjct: 619 VP 620



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 4/175 (2%)

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
           + PN     + + AL     K Q   E   L  +++        V +  L+  +   G L
Sbjct: 129 AKPNVEMYNTIIDALC----KYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKL 184

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           +  L   N    +    +  +YNI++    K GK  EA      ++      N  TY+ +
Sbjct: 185 KEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTL 244

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           ++    + ++  A  VF+A+ LM +      Y I++ GF  ++R D+A +L  EM
Sbjct: 245 MDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEM 299



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 8/164 (4%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD-- 458
           GY  D   L  ++  L   G V+       KL + G +L   +   +I+  G+ +  D  
Sbjct: 58  GYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLIN--GVCRIGDTR 115

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
           AA+K     R + G ++K  + + Y++++  L K +   +A  +  EM   GI  +V T+
Sbjct: 116 AAIKFL---RKIDGRLAKPNVEM-YNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTY 171

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           S L+Y F + G  K    L +++    + P+   + +L+ A CK
Sbjct: 172 STLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCK 215



 Score = 45.4 bits (106), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 89/467 (19%), Positives = 171/467 (36%), Gaps = 50/467 (10%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  +   G +    S   +  +R    ST + N ++      G+  +A+    +++ +G
Sbjct: 348 LINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 407

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
              N  +Y  +I  +  +G    A+++   +     K   + Y  +++     +   EA 
Sbjct: 408 FQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAY 467

Query: 263 SLLNEMRDDGKFPGRAMRVALERMQEMGF-----IQGANEFLREMLPDKRIKNVRYYEDG 317
            L +EM       G +  V        GF     ++ A   L EM+      +VR Y   
Sbjct: 468 GLFSEMT----VKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTIL 523

Query: 318 SDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVC 377
            D    E     +   +A  V LK  + P                      F + T +  
Sbjct: 524 VDALGKEGKVKEAKSVLA--VMLKACVKPDV--------------------FTYNTLMNG 561

Query: 378 KVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM 437
            +L +    + A H F  ++   G T DV+    ++    +   V+    L  ++    M
Sbjct: 562 YLLVY--EVKKAQHVFNAMSLM-GVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNM 618

Query: 438 RLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDF 497
                T   ++D    S +         + R    P      ++ Y+SL+  L K     
Sbjct: 619 VPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPAD----VITYNSLIDGLCKNGHLD 674

Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
            AI +  +M   GI P+  TF+ L+      G  K  Q++F  +   G   D Y++ V+I
Sbjct: 675 KAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMI 734

Query: 558 QAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
             +CK             +  +  +P+A T +++  +L+K+    +A
Sbjct: 735 YGHCKQGLLEEALTMLSKMEENGCIPNAVTFDIIINALFKKDENDKA 781



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 3/218 (1%)

Query: 52  SNSSNSLS-SLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALAT 110
           + S NS S + L D    PF +  ++++  +A S   + + LK    +  +  TL+ L  
Sbjct: 14  TTSQNSQSPTPLKDCDSPPFFLPPSIQNVDDAVSLSVLTKILKRG--YPPDTVTLNTLIK 71

Query: 111 VLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLL 170
            L    +  E       + +  F    V++  L+      GD    +    +   R    
Sbjct: 72  GLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDTRAAIKFLRKIDGRLAKP 131

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           + E YN ++    K     EA   F ++  +G   N  TY+ +I     +GKL  AL + 
Sbjct: 132 NVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLL 191

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           + + L  I      Y ILV+      +  EAKS+L  M
Sbjct: 192 NVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVM 229



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 12/125 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+    K K   +A+N+ +EM    +VPD  T+S L+      G    V  L   +R
Sbjct: 590 YTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMR 649

Query: 543 QNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRK 590
             G   D   +  LI   CK             + +  + P+  T  +L   L K GR K
Sbjct: 650 DRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLK 709

Query: 591 EAAAV 595
           +A  V
Sbjct: 710 DAQEV 714


>gi|218193742|gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
          Length = 1874

 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 120/296 (40%), Gaps = 44/296 (14%)

Query: 357  SPEVVSLLADAKFVWTTR-LVCKVLRHFKSPETA-WHFFCWVAYQPGYTHDVYALEKMLT 414
            SPE + +  D   V  T  LV K+L  F +   A + FF WV  Q GY H   + + M+ 
Sbjct: 1435 SPEAIMIAMDCCSVRVTGCLVDKILTRFSNDWVAAFGFFMWVGTQGGYCHCADSYDLMVD 1494

Query: 415  ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DR----- 468
            IL +    +L+  LI ++   G  +   T+  ++     + +   A+ AFH  DR     
Sbjct: 1495 ILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVK 1554

Query: 469  ----------TLCGPISKFKLMLLYSSLLRTLTKCKRDF--------------DAINVLE 504
                      TLC   S  +   ++  L  T+   +  F              +A++ +E
Sbjct: 1555 DTKAMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKARMLKEALDTME 1614

Query: 505  EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY- 563
            EM   G  P V T++ L+  + ++ D + V  L   +R+    P+   + +L+ A  K  
Sbjct: 1615 EMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAG 1674

Query: 564  -----------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
                       L    + PDA+    L   L + GR ++A +V E        P++
Sbjct: 1675 RTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNV 1730



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 77/175 (44%)

Query: 101  NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
            ++++ + L     K++   E    + ++    F    V + +L++ Y    D + V +  
Sbjct: 1589 DENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALL 1648

Query: 161  NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            +E R+R    +  +Y I+M    K G+  EA++TF ++ ++G  P++  Y  +I  L   
Sbjct: 1649 DEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRA 1708

Query: 221  GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            G+L+ A  V   +    I      +  L+       + + A  LL +M +    P
Sbjct: 1709 GRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNP 1763



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 12/119 (10%)

Query: 482  LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
             Y+SL+  L +  R  DA +V+EEM  +GI P+V TF+ L+         +   KL   +
Sbjct: 1697 FYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKM 1756

Query: 542  RQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGR 588
             +    PD   +  L++  CK            ++   ++ PD +T  LL   L + G+
Sbjct: 1757 EEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGK 1815



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 42/91 (46%)

Query: 480  MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
            ++ Y+ L+  L K  R  +A++  +++   G+ PD   ++ L+Y     G  +    +  
Sbjct: 1660 VVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVE 1719

Query: 540  MVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM 570
             +R  G+ P+   F  LI A C +    N +
Sbjct: 1720 EMRTTGIAPNVTTFNTLISAACDHSQAENAL 1750


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 103/520 (19%), Positives = 192/520 (36%), Gaps = 104/520 (20%)

Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
           G +    S + +  +R   L T + N V+      G   +A+E   ++++ G   N  +Y
Sbjct: 86  GHVSFSFSIFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSY 145

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMR--------IKRTSKQYLILVEGFVGVERFDEAK 262
            ++I  L   G+++ A+ +   +   +        +K     Y I+++        DE  
Sbjct: 146 GILINGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGF 205

Query: 263 SLLNEMRDDGKFPGRAMRVALER-MQEMG-FIQG---ANEFLRE----------MLPDKR 307
              NEM  +G  P      +L R +  +G F++G    +E +R           +L D  
Sbjct: 206 EFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGL 265

Query: 308 IKNVRYYEDGSDDDEDENDDNNSGV----RIAYGVQLKPWLD-PKALANTLDEWSPEVVS 362
            KN    E     DE  N      +     +  G  LK  +D  + L + + EW  +   
Sbjct: 266 CKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFK--- 322

Query: 363 LLADAKFVWTTRLV----CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILAR 418
                + VWT  +     CKV R  +     +   C    + G   ++     ++  L +
Sbjct: 323 -----RDVWTYNVFIHGYCKVGR-VRDAVRVFDEMC----REGVVPNIVTYNSLIDCLCK 372

Query: 419 HGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD--DRTLCGPISK 476
            G V     ++  +   G+     T  +++D    SK+ D A+  F+   +  L   +  
Sbjct: 373 AGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWS 432

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG------- 529
                 Y+ L+      +R  +A+N+L +M    +VP + T+S L+      G       
Sbjct: 433 ------YTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWR 486

Query: 530 ------------------------------DEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
                                         DE +   LF+ + + G+EPD   + ++I  
Sbjct: 487 LLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVF--LFNQMIKRGLEPDVMCYTIMIDG 544

Query: 560 YCKY------------LSNSNLMPDAATKELLKKSLWKEG 587
           YCK             +   NL+PD  T  +L  +++K G
Sbjct: 545 YCKSERIDEAINLFREMHMKNLVPDIVTYTILFNAVFKSG 584



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 74/204 (36%), Gaps = 41/204 (20%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           LM  Y   G++++    ++   +        +YN+ +  Y K G+  +AV  F ++  EG
Sbjct: 296 LMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREG 355

Query: 203 AIPNSRTYTVMIEHLVNLG-----------------------------------KLDSAL 227
            +PN  TY  +I+ L   G                                   +LD A+
Sbjct: 356 VVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAI 415

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERM 286
            +F+ L    +      Y IL+ G     R  EA +LL +M      P       L + +
Sbjct: 416 LLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGL 475

Query: 287 QEMGFIQGANEFLREM-----LPD 305
              G I  A   L EM     LPD
Sbjct: 476 CRSGRISNAWRLLNEMHVKGPLPD 499



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 104/267 (38%), Gaps = 15/267 (5%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVT-----HALRSAPNADSALSIMEALKSN- 95
           LID +  A   + +  +   ++   L P IVT       L  +   D A+ +   L  + 
Sbjct: 366 LIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESG 425

Query: 96  --PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
             P+       +H   T    S+R  E   L+ D+     +   V +  L+     SG +
Sbjct: 426 LTPDVWSYTILIHGCCT----SRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRI 481

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
                  NE   +  L  T +Y+I++    K     EAV  F Q+I  G  P+   YT+M
Sbjct: 482 SNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIM 541

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           I+      ++D A+ +F  + +  +      Y IL                +N +RD   
Sbjct: 542 IDGYCKSERIDEAINLFREMHMKNLVPDIVTYTILFNAVFKSGSNSYEWKFVNVIRDINP 601

Query: 274 FPGRAMR--VALERMQEMGFIQGANEF 298
            P R ++   AL + + + +   A+EF
Sbjct: 602 -PPRVLKYLAALCKSEHLDYKCLASEF 627



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 12/139 (8%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+  +    K  R  DA+ V +EM   G+VP++ T++ L+      G+     ++   + 
Sbjct: 328 YNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMH 387

Query: 543 QNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRK 590
           ++G+ PD     +L+   CK             L  S L PD  +  +L        R  
Sbjct: 388 RSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMG 447

Query: 591 EAAAVEERCEKINDVPSLA 609
           EA  +       N VP + 
Sbjct: 448 EAMNLLRDMHLKNLVPHIV 466


>gi|21686921|gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1833

 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 120/296 (40%), Gaps = 44/296 (14%)

Query: 357  SPEVVSLLADAKFVWTTR-LVCKVLRHFKSPETA-WHFFCWVAYQPGYTHDVYALEKMLT 414
            SPE + +  D   V  T  LV K+L  F +   A + FF WV  Q GY H   + + M+ 
Sbjct: 1394 SPEAIMIAMDCCSVRVTGCLVDKILTRFSNDWVAAFGFFMWVGTQGGYCHCADSYDLMVD 1453

Query: 415  ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DR----- 468
            IL +    +L+  LI ++   G  +   T+  ++     + +   A+ AFH  DR     
Sbjct: 1454 ILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVK 1513

Query: 469  ----------TLCGPISKFKLMLLYSSLLRTLTKCKRDF--------------DAINVLE 504
                      TLC   S  +   ++  L  T+   +  F              +A++ +E
Sbjct: 1514 DTKAMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKARMLKEALDTME 1573

Query: 505  EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY- 563
            EM   G  P V T++ L+  + ++ D + V  L   +R+    P+   + +L+ A  K  
Sbjct: 1574 EMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAG 1633

Query: 564  -----------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
                       L    + PDA+    L   L + GR ++A +V E        P++
Sbjct: 1634 RTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNV 1689



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 77/175 (44%)

Query: 101  NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
            ++++ + L     K++   E    + ++    F    V + +L++ Y    D + V +  
Sbjct: 1548 DENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALL 1607

Query: 161  NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            +E R+R    +  +Y I+M    K G+  EA++TF ++ ++G  P++  Y  +I  L   
Sbjct: 1608 DEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRA 1667

Query: 221  GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            G+L+ A  V   +    I      +  L+       + + A  LL +M +    P
Sbjct: 1668 GRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNP 1722



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 12/119 (10%)

Query: 482  LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
             Y+SL+  L +  R  DA +V+EEM  +GI P+V TF+ L+         +   KL   +
Sbjct: 1656 FYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKM 1715

Query: 542  RQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGR 588
             +    PD   +  L++  CK            ++   ++ PD +T  LL   L + G+
Sbjct: 1716 EEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGK 1774



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 42/91 (46%)

Query: 480  MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
            ++ Y+ L+  L K  R  +A++  +++   G+ PD   ++ L+Y     G  +    +  
Sbjct: 1619 VVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVE 1678

Query: 540  MVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM 570
             +R  G+ P+   F  LI A C +    N +
Sbjct: 1679 EMRTTGIAPNVTTFNTLISAACDHSQAENAL 1709


>gi|255538538|ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551035|gb|EEF52521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 947

 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 107/462 (23%), Positives = 184/462 (39%), Gaps = 67/462 (14%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V++  L+      G+    L+ WN+   R    ST ++N +++ + K  K  EA ETF +
Sbjct: 465 VSYCTLLDLLFKMGEFFRALALWNDILARGYGRSTYAFNTMINGFCKMEKMIEAEETFNR 524

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + + G  P+  TY  +I+    LG ++ A +V   +    I  + + Y  L+ G    ++
Sbjct: 525 MKELGFEPDGVTYRTLIDGYCKLGNVEEAFKVKEKMEKEAILPSIELYNSLIGGLFKSKK 584

Query: 258 FDEAKSLLNEMRDDGKFP---------------GRAMR--VALERMQEMGF--------- 291
             E   LL+EM   G  P               GR  +   A   M E GF         
Sbjct: 585 TREVMDLLSEMCLKGLSPNVVTYGTLIAGWCDEGRLDKAFTAYFDMIEKGFAPNVIICSK 644

Query: 292 ----------IQGANEFLREMLPDKRIKNVRYYED-GSDDDEDENDDNNSGVRIAYGVQL 340
                     I  AN  L++M+      N+  + D G  D   + DD N           
Sbjct: 645 IVSSLYRLGRIDEANMLLQKMV------NLDVFLDHGYFDRLHKADDGN----------- 687

Query: 341 KPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQP 400
              LD + +A+TLDE S +  SL     +      +CK  +     + A   F  +  + 
Sbjct: 688 ---LDSQKIADTLDE-SSKSFSLPNSVVYNIAIAGLCKSGK----VDDAKKIFSSLLLR- 738

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G++ D +    ++   +  G+V     L  ++   G+     T   +I+    S   D A
Sbjct: 739 GFSPDNFTYCTLIHGYSAAGNVNDAFSLRDEMLKRGLAPNIITYNALINGLCKSGNLDRA 798

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
            K F D   L G       ++ Y+ L+    K     +A+++  +M+  GI P + T+S 
Sbjct: 799 QKLF-DKLHLKGLAPN---VISYNILIDGYCKNGNTREALDLRNKMLKEGISPSLITYSA 854

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           L+Y F  QGD      L   +R+   + +   F  L++ + K
Sbjct: 855 LIYGFCKQGDMGKATNLLDEMRELFADQNIAKFVKLVEGHVK 896



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 88/489 (17%), Positives = 187/489 (38%), Gaps = 50/489 (10%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           S ++  LM  +   G +   +S +NE  +     +  ++N ++    + G   +A+  + 
Sbjct: 394 SYSYSTLMDGFCREGLVTKAISVYNEMLRVGIQSNVVTHNSLLKGLCRVGAFEDALHVWH 453

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
            ++  G  P+  +Y  +++ L  +G+   AL +++ +      R++  +  ++ GF  +E
Sbjct: 454 LMLKRGVTPDEVSYCTLLDLLFKMGEFFRALALWNDILARGYGRSTYAFNTMINGFCKME 513

Query: 257 RFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
           +  EA+   N M++ G  P G   R  ++   ++G ++ A +   +M  +  + ++  Y 
Sbjct: 514 KMIEAEETFNRMKELGFEPDGVTYRTLIDGYCKLGNVEEAFKVKEKMEKEAILPSIELYN 573

Query: 316 DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL 375
                                   +      K     +D  S   +  L+     + T +
Sbjct: 574 S----------------------LIGGLFKSKKTREVMDLLSEMCLKGLSPNVVTYGTLI 611

Query: 376 V--CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
              C   R  K+    +        + G+  +V    K+++ L R G ++  + L+ K+ 
Sbjct: 612 AGWCDEGRLDKAFTAYFDMI-----EKGFAPNVIICSKIVSSLYRLGRIDEANMLLQKMV 666

Query: 434 SDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL--MLLYSSLLRTLT 491
           +  + L          F  + K  D  L +     TL      F L   ++Y+  +  L 
Sbjct: 667 NLDVFLDHGY------FDRLHKADDGNLDSQKIADTLDESSKSFSLPNSVVYNIAIAGLC 720

Query: 492 KCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAY 551
           K  +  DA  +   ++  G  PD  T+  L++ ++  G+      L   + + G+ P+  
Sbjct: 721 KSGKVDDAKKIFSSLLLRGFSPDNFTYCTLIHGYSAAGNVNDAFSLRDEMLKRGLAPNII 780

Query: 552 MFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERC 599
            +  LI   CK             L    L P+  +  +L     K G  +EA  +  + 
Sbjct: 781 TYNALINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDGYCKNGNTREALDLRNKM 840

Query: 600 EKINDVPSL 608
            K    PSL
Sbjct: 841 LKEGISPSL 849



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 84/179 (46%), Gaps = 1/179 (0%)

Query: 93  KSNPNFSHNQSTLHALATV-LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG 151
           +S+ +FS   S ++ +A   L KS +  + K +   +    F   +  +  L+  YS +G
Sbjct: 699 ESSKSFSLPNSVVYNIAIAGLCKSGKVDDAKKIFSSLLLRGFSPDNFTYCTLIHGYSAAG 758

Query: 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT 211
           ++    S  +E  +R    +  +YN +++   K+G    A + F ++  +G  PN  +Y 
Sbjct: 759 NVNDAFSLRDEMLKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYN 818

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
           ++I+     G    AL++ + +    I  +   Y  L+ GF       +A +LL+EMR+
Sbjct: 819 ILIDGYCKNGNTREALDLRNKMLKEGISPSLITYSALIYGFCKQGDMGKATNLLDEMRE 877



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/131 (22%), Positives = 58/131 (44%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + +  L+     SG+L+     +++   +    +  SYNI++  Y K G   EA++   +
Sbjct: 780 ITYNALINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDGYCKNGNTREALDLRNK 839

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++ EG  P+  TY+ +I      G +  A  +   +  +   +   +++ LVEG V    
Sbjct: 840 MLKEGISPSLITYSALIYGFCKQGDMGKATNLLDEMRELFADQNIAKFVKLVEGHVKCGE 899

Query: 258 FDEAKSLLNEM 268
             +   L N M
Sbjct: 900 VKKIAKLHNMM 910



 Score = 42.7 bits (99), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 12/140 (8%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           ++SLL+ L +     DA++V   M+  G+ PD  ++  L+      G+      L++ + 
Sbjct: 432 HNSLLKGLCRVGAFEDALHVWHLMLKRGVTPDEVSYCTLLDLLFKMGEFFRALALWNDIL 491

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
             G     Y F  +I  +CK             +      PD  T   L     K G  +
Sbjct: 492 ARGYGRSTYAFNTMINGFCKMEKMIEAEETFNRMKELGFEPDGVTYRTLIDGYCKLGNVE 551

Query: 591 EAAAVEERCEKINDVPSLAL 610
           EA  V+E+ EK   +PS+ L
Sbjct: 552 EAFKVKEKMEKEAILPSIEL 571



 Score = 40.4 bits (93), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 54/289 (18%), Positives = 122/289 (42%), Gaps = 27/289 (9%)

Query: 37  LRRAQLIDSI-RLAV--RSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALK 93
           L R +LID I RL V  R ++   L+   +D +LD  +    L+   N  ++L   +   
Sbjct: 30  LTRPELIDRISRLLVLGRYHALKDLNFQFSDYILDSVL----LKLKFNPIASLHFFKLAS 85

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVS---------------- 137
              NF  N ++   L  +L++++   E ++ + ++ +    N S                
Sbjct: 86  KQSNFRPNVNSHCKLVHILSRARMYDETRSYLNELVTPSKNNYSSLVVWNELVRVFEDFK 145

Query: 138 ---VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
                F  +++ Y   G ++  L  ++   +   + S  S N ++S   + G++  A+  
Sbjct: 146 FSPTVFDMILKIYCEKGMIKNALHVFDNMGKLGCVPSLRSCNRLLSSLVRKGESSNAILV 205

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
           +  +   G +P+  T ++M+      G ++ A++    +  +  +     Y  L++G V 
Sbjct: 206 YDHINRLGIVPDVFTCSIMVNAYCKDGWVNVAVDFVKEMDYLGFELNVVTYNSLIDGCVS 265

Query: 255 VERFDEAKSLLNEMRDDGKFPGRA-MRVALERMQEMGFIQGANEFLREM 302
           +   + A+ +L  M + G    +  + + ++       ++ A + LREM
Sbjct: 266 IGDMERAEMVLKLMGERGILRNKVTLTLLIKGYCRQCKLEEAEKVLREM 314


>gi|356554513|ref|XP_003545590.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Glycine max]
          Length = 632

 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 74/151 (49%), Gaps = 3/151 (1%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           ++   A  G++E   +++ K++  G++    T   +I  YGI+ K D ++K      T  
Sbjct: 148 LINAFAESGNMEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDESMKLLDLMSTEG 207

Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
                 K    Y+ L+R L K +   +A NV+ +M  SG+ PDV TF+ +   +A  G  
Sbjct: 208 NVKPNLKT---YNMLIRALCKMENISEAWNVVYKMTASGMQPDVVTFNTIATAYAQNGKT 264

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
              + +   +++N ++P+     ++I  YC+
Sbjct: 265 AQAEAMILEMQRNSLKPNERTCTIIISGYCR 295



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 78/390 (20%), Positives = 159/390 (40%), Gaps = 72/390 (18%)

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           VM++  K+GK  EA+  F+ +I+ G  P+  TYT ++  L           + S +   +
Sbjct: 78  VMNILIKSGKPQEAIVIFQNLIEGGHQPSLATYTTLLNALTTQKYFKPIHSIVSLVEEKQ 137

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANE 297
           +K  S  +  L+  F      ++AK ++                  ++M+E G    A  
Sbjct: 138 MKPDSIFFNALINAFAESGNMEDAKKVV------------------QKMKESGLKPSACT 179

Query: 298 FLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWS 357
           +                              N+ ++  YG+  KP    K L        
Sbjct: 180 Y------------------------------NTLIK-GYGIAGKPDESMKLL-------- 200

Query: 358 PEVVSLLADAK-FVWTTRLVCKVLRHFKSPETAWHFFCWVAYQ---PGYTHDVYALEKML 413
            +++S   + K  + T  ++ + L   ++   AW+    V Y+    G   DV     + 
Sbjct: 201 -DLMSTEGNVKPNLKTYNMLIRALCKMENISEAWN----VVYKMTASGMQPDVVTFNTIA 255

Query: 414 TILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGP 473
           T  A++G     + +I +++ + ++    T  +II  Y    K   AL+  +  + L   
Sbjct: 256 TAYAQNGKTAQAEAMILEMQRNSLKPNERTCTIIISGYCREGKVQEALRFVYRMKDLGMQ 315

Query: 474 ISKFKLMLLYSSLLRTLTKCKRDFDAIN-VLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
            +   L  L +  +  +     D D ++ VL+ M    I PDV T+S +M  ++  G  +
Sbjct: 316 PNLIVLNSLVNGFVDMM-----DRDGVDEVLKLMEEFQIRPDVITYSTIMNAWSQAGFLE 370

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
             +++++ + ++GV+PDA+ + +L + Y +
Sbjct: 371 KCKEIYNNMLKSGVKPDAHAYSILAKGYVR 400



 Score = 43.1 bits (100), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 34/164 (20%), Positives = 73/164 (44%), Gaps = 1/164 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + +  +M  +S +G LE     +N   +        +Y+I+   Y +  +  +A E    
Sbjct: 354 ITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDAHAYSILAKGYVRAQEMEKAEEMLTV 413

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G  PN   +T +I    ++G++D+A+ VF  +    +    K +  L+ G+   ++
Sbjct: 414 MTKSGVHPNVVIFTTVISGWCSVGRMDNAMRVFDKMGEFGVSPNLKTFETLIWGYAEAKQ 473

Query: 258 FDEAKSLLNEMRDDGKFPGRA-MRVALERMQEMGFIQGANEFLR 300
             +A+ +L  M +    P ++ + +  E  +  GF + A   LR
Sbjct: 474 PWKAEGMLQIMEEFHVQPKKSTILLVAEAWRFAGFKERAKTLLR 517


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 103/484 (21%), Positives = 188/484 (38%), Gaps = 68/484 (14%)

Query: 83  DSALSIMEALKS---NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
           D+ L ++E L S   N     + ST + L   L K+ +      ++ ++++       + 
Sbjct: 136 DNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEIT 195

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           F  LMQ +   GDL   L    +      LL+  S  ++++ + K G+  EA+    +V 
Sbjct: 196 FTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVS 255

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           +EG  P+  T+                                     LV GF  +   +
Sbjct: 256 EEGFSPDQVTFNS-----------------------------------LVNGFCRIGNVN 280

Query: 260 EAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGS 318
           +A  +++ M + G  P      +L   M ++G  + A E L++M+  +   N   Y    
Sbjct: 281 DALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLI 340

Query: 319 DDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCK 378
                EN+       I     L   L  K L              L D   V T   + +
Sbjct: 341 SALCKENE-------IEAATDLARILVSKGL--------------LPD---VCTFNTLIQ 376

Query: 379 VLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR 438
            L   K+ + A   F  +  + G   D +    ++  L     ++    L+ ++ S G  
Sbjct: 377 GLCLSKNQDIAMEMFEEMKNK-GCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCA 435

Query: 439 LPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD 498
                   +ID    S++ + A + F D   L G +S+  +   Y++L+  L K KR  +
Sbjct: 436 RNAVVYNTLIDGLCKSRRIEDAEEIF-DQMELLG-VSRSSVT--YNTLIDGLCKNKRVEE 491

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A  ++++MI  G+ PD  T++ L+ +F   GD +    +   +  NG EPD + +  LI 
Sbjct: 492 ASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIG 551

Query: 559 AYCK 562
             C+
Sbjct: 552 GLCR 555



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+SL+  + K      AI +L++MI     P+  T++ L+     + + +    L  ++ 
Sbjct: 301 YNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILV 360

Query: 543 QNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRK 590
             G+ PD   F  LIQ  C            + + N    PD  T  +L  SL  E R K
Sbjct: 361 SKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLK 420

Query: 591 EA 592
           EA
Sbjct: 421 EA 422



 Score = 43.5 bits (101), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 92/224 (41%), Gaps = 6/224 (2%)

Query: 54  SSNSLSSLLNDRLLDPFIVT-----HALRSAPNADSALSIMEALKSNPNFSHNQSTLHAL 108
           ++  L+ +L  + L P + T       L  + N D A+ + E +K N     ++ T   L
Sbjct: 351 AATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMK-NKGCKPDEFTYSIL 409

Query: 109 ATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAK 168
              L   +R  E   L+ ++ SS     +V +  L+     S  +E     +++      
Sbjct: 410 IDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGV 469

Query: 169 LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALE 228
             S+ +YN ++    K  +  EA +   Q+I EG  P+  TY  ++ +   +G ++ A +
Sbjct: 470 SRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGD 529

Query: 229 VFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +   +     +     Y  L+ G     R D A  LL  ++  G
Sbjct: 530 IVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKG 573



 Score = 43.1 bits (100), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 77/193 (39%), Gaps = 31/193 (16%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID----------- 449
           G+  D       L  L     ++LV+ L +K+ ++G+ L  ST  ++I            
Sbjct: 118 GFKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPA 177

Query: 450 FYGISKKADAALK-----------AFHDDRTLCGPISKFKLMLLYSSLLRTLTK------ 492
              + + A+  LK            F ++  L G +   K ML Y  LL  ++       
Sbjct: 178 ILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNG 237

Query: 493 -CK--RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
            CK  R  +A+  + E+   G  PD  TF+ L+  F   G+      +   + + G +PD
Sbjct: 238 FCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPD 297

Query: 550 AYMFKVLIQAYCK 562
            Y +  LI   CK
Sbjct: 298 VYTYNSLISGMCK 310



 Score = 40.0 bits (92), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 14/115 (12%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD-EKIVQKLFSMV 541
           ++SL+    +     DA+++++ MI  G  PDV T++ L+      G+ EK ++ L  M+
Sbjct: 266 FNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMI 325

Query: 542 RQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLW 584
            +    P+   +  LI A CK             L +  L+PD  T   L + L 
Sbjct: 326 LRE-CSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLC 379


>gi|218200036|gb|EEC82463.1| hypothetical protein OsI_26904 [Oryza sativa Indica Group]
          Length = 346

 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 89/210 (42%), Gaps = 27/210 (12%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR-------LIIDFYGISKKA 457
           D  +   +LT L R GH    DR  A LR+  +  P    R       +++      ++A
Sbjct: 76  DAVSYNTVLTALCRRGHH---DRAGALLRAMSLE-PHPACRPNAVSYTVLMRALCADRRA 131

Query: 458 DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
           D A+      R+          ++ Y +L+R L        A+ ++ EM  SGI P+V  
Sbjct: 132 DQAVGLLRSMRS----AGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVV 187

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LS 565
           +S L+  +   G  + V K+F  + + G+EPD  M+  LI + CK             + 
Sbjct: 188 YSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMV 247

Query: 566 NSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
              L P+  T  +L   + KEG  KEA  V
Sbjct: 248 RRGLEPNVVTYNVLINCMCKEGSVKEAIGV 277



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 81/198 (40%), Gaps = 1/198 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           ++  AL +   AD A+ ++ +++S      +  T   L   L  +    +   L+G++  
Sbjct: 120 VLMRALCADRRADQAVGLLRSMRS-AGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCE 178

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           S      V + +L+Q Y  SG  E V   + E  ++        Y  ++    K GK  +
Sbjct: 179 SGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKK 238

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A      ++  G  PN  TY V+I  +   G +  A+ V   +    +      Y  L++
Sbjct: 239 AHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIK 298

Query: 251 GFVGVERFDEAKSLLNEM 268
           G   V   DEA  LL EM
Sbjct: 299 GLSDVLEMDEAMWLLEEM 316


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 103/260 (39%), Gaps = 13/260 (5%)

Query: 65  RLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNH 119
           R +DP I T+             D A  + E + S   F  +  T + L     KS+R  
Sbjct: 283 RSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFP-DLDTYNTLIKGFCKSKRVE 341

Query: 120 ELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM 179
           +   L  ++S    +  +V +  L+Q     GD +     + +           +Y+I++
Sbjct: 342 DGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILL 401

Query: 180 SVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIK 239
                 GK  +A+E F  +       +   YT MIE +   GK+D   ++F +L L  +K
Sbjct: 402 DGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVK 461

Query: 240 RTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQ-EMGFIQGANEF 298
                Y  ++ G        EA +LL +M++DG  P       L R     G    + E 
Sbjct: 462 PNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAEL 521

Query: 299 LREMLPDKRIKNVRYYEDGS 318
           +REM      ++ R+  D S
Sbjct: 522 IREM------RSCRFVGDAS 535



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 79/190 (41%), Gaps = 16/190 (8%)

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
           L + G ++L   L+ K+ +  +         IID     +  D AL  F +  T      
Sbjct: 159 LCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETK----G 214

Query: 476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ 535
               ++ YSSL+  L    R  DA  +L +MI   I P++ TF+ L+  F  +G     +
Sbjct: 215 IRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAE 274

Query: 536 KLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSL 583
           KL   + +  ++PD + +  LI  +C            +++ + +  PD  T   L K  
Sbjct: 275 KLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGF 334

Query: 584 WKEGRRKEAA 593
            K  R ++  
Sbjct: 335 CKSKRVEDGT 344



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 9/136 (6%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++L++   K KR  D   +  EM   G+V D  T++ L+      GD    QK+F  + 
Sbjct: 327 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 386

Query: 543 QNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCE-- 600
            +GV PD   + +L+   C   +N  L       + ++KS  K         +E  C+  
Sbjct: 387 SDGVPPDIMTYSILLDGLC---NNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAG 443

Query: 601 KIND----VPSLALRG 612
           K++D      SL+L+G
Sbjct: 444 KVDDGWDLFCSLSLKG 459



 Score = 42.4 bits (98), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 38/79 (48%)

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           SSLL      KR  DA+ ++++M+  G  PD  TF+ L++   L         L   + Q
Sbjct: 83  SSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQ 142

Query: 544 NGVEPDAYMFKVLIQAYCK 562
            G +P+   + V++   CK
Sbjct: 143 RGCQPNLVTYGVVVNGLCK 161



 Score = 40.0 bits (92), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 55/118 (46%)

Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
           GD++L  +  N+            +N ++    K     +A+  F+++  +G  PN  TY
Sbjct: 163 GDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTY 222

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           + +I  L + G+   A ++ S +   +I      +  L++ FV   +F EA+ L ++M
Sbjct: 223 SSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDM 280


>gi|384247929|gb|EIE21414.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 448

 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 89/200 (44%), Gaps = 18/200 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   +V     +L+   R G  E   R+  ++ +DG +   +T   +I  YG + K + A
Sbjct: 173 GTKPEVRTYNTILSACNRSGQPEHALRVYERMLADGAQPTATTYTALISAYGKTGKIEEA 232

Query: 461 LKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           L+ F D  R  C      + ++ YSSL+    K  R   A+ +L+EM      P+  TF+
Sbjct: 233 LRIFQDMVRRGCE-----RNVITYSSLISACEKAGRWQLALELLDEMHRDNCKPNTVTFN 287

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY------CKYLSNSNLM--- 570
            L+   A  G  K  Q +F  +   G +PDA  + +LI A+      C+ L   + M   
Sbjct: 288 ALLSACAQGGQWKAAQDVFEQMPSCGCKPDAVSYAILISAFDRGNQWCRALQALDEMQGQ 347

Query: 571 ---PDAATKELLKKSLWKEG 587
              PD     ++ ++L + G
Sbjct: 348 GHRPDVGVYNVVIEALTRSG 367



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/183 (20%), Positives = 82/183 (44%), Gaps = 4/183 (2%)

Query: 89  MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN---FMNLMQ 145
           + +L  N   +H    ++   T++++   + +L+  +  ++  +   V  N   +  LM 
Sbjct: 58  LRSLPDNHELAH-LCDVYTYTTIISQCGSHQQLRKALELVAEMRGHGVVCNVHTYSALMN 116

Query: 146 WYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP 205
               + +LEL L  + +  +     +  +YNI++ ++ K G   EAV+    + D+G  P
Sbjct: 117 VCIKANELELALDVYGQLLREGCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKP 176

Query: 206 NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL 265
             RTY  ++      G+ + AL V+  +     + T+  Y  L+  +    + +EA  + 
Sbjct: 177 EVRTYNTILSACNRSGQPEHALRVYERMLADGAQPTATTYTALISAYGKTGKIEEALRIF 236

Query: 266 NEM 268
            +M
Sbjct: 237 QDM 239



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 7/165 (4%)

Query: 152 DLELVLSTWNEYRQRAKLLSTE-------SYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204
           D+   +  W E  Q    L  +       +YN ++S   ++G+   A+  + +++ +GA 
Sbjct: 151 DIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQPEHALRVYERMLADGAQ 210

Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL 264
           P + TYT +I      GK++ AL +F  +     +R    Y  L+       R+  A  L
Sbjct: 211 PTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVITYSSLISACEKAGRWQLALEL 270

Query: 265 LNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIK 309
           L+EM  D   P      AL      G    A + + E +P    K
Sbjct: 271 LDEMHRDNCKPNTVTFNALLSACAQGGQWKAAQDVFEQMPSCGCK 315



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 70/157 (44%), Gaps = 1/157 (0%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           +  +  L+  Y  +G +E  L  + +  +R    +  +Y+ ++S   K G+   A+E   
Sbjct: 213 ATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVITYSSLISACEKAGRWQLALELLD 272

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           ++  +   PN+ T+  ++      G+  +A +VF  +P    K  +  Y IL+  F    
Sbjct: 273 EMHRDNCKPNTVTFNALLSACAQGGQWKAAQDVFEQMPSCGCKPDAVSYAILISAFDRGN 332

Query: 257 RFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFI 292
           ++  A   L+EM+  G  P   +  V +E +   G +
Sbjct: 333 QWCRALQALDEMQGQGHRPDVGVYNVVIEALTRSGVL 369



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 82/198 (41%), Gaps = 11/198 (5%)

Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI 177
           NHEL  L    + +  ++   +   L +       LELV     E R    + +  +Y+ 
Sbjct: 64  NHELAHLCDVYTYTTIISQCGSHQQLRK------ALELV----AEMRGHGVVCNVHTYSA 113

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           +M+V  K  +   A++ + Q++ EG  PN  TY ++I+    +G    A++V  AL    
Sbjct: 114 LMNVCIKANELELALDVYGQLLREGCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQG 173

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGAN 296
            K   + Y  ++       + + A  +   M  DG  P      AL     + G I+ A 
Sbjct: 174 TKPEVRTYNTILSACNRSGQPEHALRVYERMLADGAQPTATTYTALISAYGKTGKIEEAL 233

Query: 297 EFLREMLPDKRIKNVRYY 314
              ++M+     +NV  Y
Sbjct: 234 RIFQDMVRRGCERNVITY 251


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 108/561 (19%), Positives = 214/561 (38%), Gaps = 70/561 (12%)

Query: 69  PFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDI 128
           P  VT  +R   +   AL +  +++    F H  ST  ++   L    +   ++ ++ D+
Sbjct: 7   PKHVTTVIRCQKDPMKALEMFNSMRKEDGFKHTLSTYRSIIEKLGLYGKFEAMEEVLVDM 66

Query: 129 SSSKFLNVSVN-----FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE----SYNIVM 179
                 NV  +     ++  M+ Y   G ++  ++ +    +R      E    SYN +M
Sbjct: 67  RQ----NVGNHMLEGVYVGAMKNYGRKGKVQEAVNVF----ERMDFYDCEPTVFSYNAIM 118

Query: 180 SVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIK 239
           S+   +G   +A + + ++ D G  P+  ++T+ ++      +  +AL + + +     +
Sbjct: 119 SILVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCE 178

Query: 240 RTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQGANEF 298
                Y  +V GF      DE   L  +M   G           L  + + G ++   + 
Sbjct: 179 MNVVAYCTVVGGFYEENFKDEGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKL 238

Query: 299 LREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDP--KALANTLDEW 356
           L +++    + N+  Y                      G+  K  LD   + +   +D+ 
Sbjct: 239 LDKVIKRGVLPNLFTYN-----------------FFIQGLCQKGELDAAVRMVGRLIDQG 281

Query: 357 -SPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
             P+VV+      + +    +CK  + F+  E           +P    D +    ++  
Sbjct: 282 PKPDVVT------YNYLIYGLCKNSK-FQEAEVYLGKLVNEGLEP----DSFTYNTLIAG 330

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
             + G V+L +R++     +G      T R +ID      + + AL  F++   L   I 
Sbjct: 331 YCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNE--ALGKGIK 388

Query: 476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ 535
               ++LY++L++ L+      +A  +  EM   G++P+VQTF+ L+      G      
Sbjct: 389 PN--VILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDAD 446

Query: 536 KLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM------------PDAATKELLKKSL 583
            L  ++   G  PD + F +LI  Y   L   N +            PD  T   L   L
Sbjct: 447 GLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGL 506

Query: 584 WKEGRRKEA-----AAVEERC 599
            K  + ++        VE+ C
Sbjct: 507 CKTSKYEDVMETYKTMVEKGC 527



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 108/277 (38%), Gaps = 12/277 (4%)

Query: 2   FSKRFLPAVILSKAFTQLQTRSFVRAPFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSL 61
           F+   L A        QL  R  V A F   +        LID +        +N   +L
Sbjct: 322 FTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGL---CHEGETNRALAL 378

Query: 62  LNDRL---LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQ-----STLHALATVLA 113
            N+ L   + P ++ +       ++  L I+EA +     S         T + L   L 
Sbjct: 379 FNEALGKGIKPNVILYNTLIKGLSNQGL-ILEAAQLASEMSEKGLIPEVQTFNILVNGLC 437

Query: 114 KSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE 173
           K     +   L+  + S  +      F  L+  YST   +E  L   +            
Sbjct: 438 KMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVY 497

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN +++   KT K  + +ET++ ++++G  PN  T+ +++E L    KLD AL +   +
Sbjct: 498 TYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEM 557

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
               +   +  +  L++GF      D A +L  +M +
Sbjct: 558 KNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEE 594



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 84/194 (43%), Gaps = 17/194 (8%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH--ALRSAPNADSALSIMEALKS--NPN 97
           LI      ++  ++  +  ++ D  +DP + T+   L           +ME  K+     
Sbjct: 467 LIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKG 526

Query: 98  FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNV---SVNFMNLMQWYSTSGDLE 154
            + N  T + L   L    R H+L   +G +   K  +V   +V F  L+  +  +GDL+
Sbjct: 527 CAPNLFTFNILLESLC---RYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLD 583

Query: 155 LVLSTWNEYRQRAKL----LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
                +  +R+  ++     ST +YNI++  + +      A + F++++D    P+  TY
Sbjct: 584 ---GAYTLFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTY 640

Query: 211 TVMIEHLVNLGKLD 224
            +M++     G +D
Sbjct: 641 RLMVDGFCKTGNVD 654



 Score = 38.5 bits (88), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 1/130 (0%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++NI++  Y+   K   A+E    ++D G  P+  TY  ++  L    K +  +E +  +
Sbjct: 463 TFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTM 522

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFI 292
                      + IL+E      + D+A  LL EM++    P        ++   + G +
Sbjct: 523 VEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDL 582

Query: 293 QGANEFLREM 302
            GA    R+M
Sbjct: 583 DGAYTLFRKM 592


>gi|297723955|ref|NP_001174341.1| Os05g0313900 [Oryza sativa Japonica Group]
 gi|255676233|dbj|BAH93069.1| Os05g0313900 [Oryza sativa Japonica Group]
          Length = 1070

 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 104/230 (45%), Gaps = 8/230 (3%)

Query: 77  RSAPNADSALSIMEALKSN--PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFL 134
           R  P A  AL ++  +++N  P +  N + +      L  S R  E    +  +    FL
Sbjct: 523 RKDPKA--ALDLLREMQTNGHPPWIKNCTEM---VQQLCFSGRVTEAVQFLDGMLQIGFL 577

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
              V +   M     +G+++  L  + +   +  L    ++NI+++ + K+ K  EA + 
Sbjct: 578 PDIVTYSAAMNGMCNTGEVDDALHLFRDISCKYYLPDVVAHNILINGFRKSSKLDEAQKI 637

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
             +++++G  P+  TY +MI+     G+++ A+     +     + T   Y  L++GF  
Sbjct: 638 MEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMVYEEKQPTVITYTSLIDGFCS 697

Query: 255 VERFDEAKSLLNEMRDDGKFPGRAMRVA-LERMQEMGFIQGANEFLREML 303
             R DEA  L  EMR+ G  P      A +  +++ G I+ A  +  EM+
Sbjct: 698 AGRPDEAIKLWCEMREKGCAPNNIAYTAFINGLRKCGRIETALTYFEEMV 747



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 80/190 (42%), Gaps = 13/190 (6%)

Query: 379 VLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR 438
           VL    S   A  FF W A QPG+ H  Y+L  M ++L RH    L DRL A   S    
Sbjct: 77  VLLRLPSWRHALDFFRWAADQPGFRHSCYSLNAMASLLPRHQRAHL-DRLAADAISARCL 135

Query: 439 LPFSTIRLIIDFYGISKKADAALKAFHDDRTL--CGPISKFKLMLLYSSLLRTLTKCKRD 496
           +    +  ++   G +   D A++AF   R    C P S       Y+ LL  L K  R 
Sbjct: 136 MTPGALGFLLRCLGAAGLPDTAVRAFDAARASFGCTPNS-----YTYNCLLDALAKAGRA 190

Query: 497 FDAINVLEEMIF---SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
            DA   L EM+     G V D  T + L+  +   G       +F  + + G   D ++ 
Sbjct: 191 DDAQARLREMVARCGDGSV-DKYTLTSLLRCYCNAGRPDDANDVFQRMSELGWV-DEHVL 248

Query: 554 KVLIQAYCKY 563
             L+ A+ K+
Sbjct: 249 TTLMVAFSKW 258



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 107/521 (20%), Positives = 189/521 (36%), Gaps = 85/521 (16%)

Query: 80  PNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
           P+   AL         P F H+  +L+A+A++L + QR H L  L  D  S++ L     
Sbjct: 82  PSWRHALDFFRWAADQPGFRHSCYSLNAMASLLPRHQRAH-LDRLAADAISARCLMTPGA 140

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLL-STESYNIVMSVYAKTGKNFEAVETFRQV 198
              L++    +G  +  +  ++  R       ++ +YN ++   AK G+  +A    R++
Sbjct: 141 LGFLLRCLGAAGLPDTAVRAFDAARASFGCTPNSYTYNCLLDALAKAGRADDAQARLREM 200

Query: 199 IDEGAIPNSRTYTV----------------------------MIEHLVNL--------GK 222
           +      +   YT+                            + EH++          GK
Sbjct: 201 VARCGDGSVDKYTLTSLLRCYCNAGRPDDANDVFQRMSELGWVDEHVLTTLMVAFSKWGK 260

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RV 281
           +D A+E+  ++  + ++ + K   +LV GF    R D+A  +  +M   G     AM  V
Sbjct: 261 VDGAVELLGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAKMVSYGFVVDLAMYSV 320

Query: 282 ALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLK 341
            +E + +   I  A +  +EM       +VR  +   +    E D         + V + 
Sbjct: 321 LIEGLCQQKDIARAVKLFKEMKSSGVAPDVRLLKKVIEAFCREGD---------FAV-IG 370

Query: 342 PWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFF-CWVAYQP 400
           P+++  A               L     V    +V + L H    E A+      V    
Sbjct: 371 PFINENA-------------EYLKSGSVVPLYNVVLEELVHCGEVEAAYQLLRSMVCGGQ 417

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
              +DV     ML I           R  AK  SD       +  +++      KK D A
Sbjct: 418 AVNNDVAGGAHMLHI-----------REDAKPNSD-------SFNIVVCGLCKVKKLDMA 459

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           L A   D    G   K   +L+++ L+  L    R  +   +  +M   G+ P   T++ 
Sbjct: 460 L-ALTKDMISLGCKGK---ILMFNDLIHELCNMDRLEEGYGIFNQMKDLGLTPSEFTYNS 515

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           L Y    + D K    L   ++ NG  P       ++Q  C
Sbjct: 516 LFYGICRRKDPKAALDLLREMQTNGHPPWIKNCTEMVQQLC 556



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 1/131 (0%)

Query: 185 TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQ 244
           +G+  EAV+    ++  G +P+  TY+  +  + N G++D AL +F  +           
Sbjct: 558 SGRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKYYLPDVVA 617

Query: 245 YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREML 303
           + IL+ GF    + DEA+ ++ EM + G FP      + ++   + G I+ A  +L +M+
Sbjct: 618 HNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMV 677

Query: 304 PDKRIKNVRYY 314
            +++   V  Y
Sbjct: 678 YEEKQPTVITY 688



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 118/302 (39%), Gaps = 39/302 (12%)

Query: 31  NKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNA---DSALS 87
           N +A  L R Q     RLA  + S+  L        + P  +   LR    A   D+A+ 
Sbjct: 108 NAMASLLPRHQRAHLDRLAADAISARCL--------MTPGALGFLLRCLGAAGLPDTAVR 159

Query: 88  IMEALKSNPNFSHNQSTLHALATVLAKSQRN-------HELKTLIGDISSSKFLNVSVNF 140
             +A +++   + N  T + L   LAK+ R         E+    GD S  K+       
Sbjct: 160 AFDAARASFGCTPNSYTYNCLLDALAKAGRADDAQARLREMVARCGDGSVDKY-----TL 214

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI---VMSVYAKTGKNFEAVETFRQ 197
            +L++ Y  +G  +      N+  QR   L     ++   +M  ++K GK   AVE    
Sbjct: 215 TSLLRCYCNAGRPD----DANDVFQRMSELGWVDEHVLTTLMVAFSKWGKVDGAVELLGS 270

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G   + +T +V++      G++D A+++F+ +           Y +L+EG    + 
Sbjct: 271 MEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAKMVSYGFVVDLAMYSVLIEGLCQQKD 330

Query: 258 FDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
              A  L  EM+  G  P  R ++  +E     G       F+ E        N  Y + 
Sbjct: 331 IARAVKLFKEMKSSGVAPDVRLLKKVIEAFCREGDFAVIGPFINE--------NAEYLKS 382

Query: 317 GS 318
           GS
Sbjct: 383 GS 384



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 63/149 (42%)

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L  DIS   +L   V    L+  +  S  L+       E  ++    S  +YN+++ V  
Sbjct: 602 LFRDISCKYYLPDVVAHNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCC 661

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           KTG+  +A+    +++ E   P   TYT +I+   + G+ D A++++  +        + 
Sbjct: 662 KTGRIEKAISYLDKMVYEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNI 721

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDG 272
            Y   + G     R + A +   EM   G
Sbjct: 722 AYTAFINGLRKCGRIETALTYFEEMVTKG 750



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 42/79 (53%)

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           S L+   TK  R   A+++  +M+  G V D+  +S L+     Q D     KLF  ++ 
Sbjct: 284 SVLVHGFTKQGRVDKAMDMFAKMVSYGFVVDLAMYSVLIEGLCQQKDIARAVKLFKEMKS 343

Query: 544 NGVEPDAYMFKVLIQAYCK 562
           +GV PD  + K +I+A+C+
Sbjct: 344 SGVAPDVRLLKKVIEAFCR 362


>gi|358346363|ref|XP_003637238.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503173|gb|AES84376.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 100/479 (20%), Positives = 198/479 (41%), Gaps = 75/479 (15%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
            V +  L+  Y   G +EL      +  +     +  +++ +++ YAK G   +AV+  R
Sbjct: 115 CVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLR 174

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           +++    +PN+  Y ++I+     G+ D A +    +   R++ ++  + IL+     V 
Sbjct: 175 EMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVG 234

Query: 257 RFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLR-EMLPDKRIKNVRYYE 315
           R DEA+SL+ +M   G  P      +L      G+ +  N+     ++ + + KN+R+  
Sbjct: 235 RMDEARSLIIDMYSKGIDPDIVNYASLID----GYFKEGNQLAALSIVQEMKEKNIRFD- 289

Query: 316 DGSDDDEDENDDNNSGVRIAYGVQLKPWL-----DPKALANTLDEWSPEVVSLLADAKFV 370
                             +AY   +K  L     DP+ + + + E     + L  D K  
Sbjct: 290 -----------------VVAYNALIKGLLRLGKYDPRYVCSRMIE-----LGLAPDCK-- 325

Query: 371 WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIA 430
             T     +L   KS         +       T+++     ++  L + G VE  +  + 
Sbjct: 326 --TEDALDILNEMKS---------YGIMPNAVTYNI-----LIGGLCKTGAVEKAESALD 369

Query: 431 K-LRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLML-LYSSLLR 488
           + L  + +  P  T + ++  Y  S+KAD  L+  H+     G     +L L +Y++L+ 
Sbjct: 370 EMLVMEFVPTPI-THKFLVKAYSRSEKADKILQ-IHEKLVASG----LELSLTVYNTLIT 423

Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548
              +      A  VL+EM+  GI  D+ T++ L+  +      +   K +S +  +G+ P
Sbjct: 424 VFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMFVDGIAP 483

Query: 549 DAYMFKVLIQAYC-------------KYLSNSN---LMPDAATKELLKKSLWKEGRRKE 591
           +   +  L+                 K +S  N   L+P+AAT ++L     + G RK+
Sbjct: 484 NITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDILVSGYGRVGNRKK 542



 Score = 45.8 bits (107), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 47/237 (19%), Positives = 100/237 (42%), Gaps = 13/237 (5%)

Query: 51  RSNSSNSLSSLLNDRLLDPFI---VTH-----ALRSAPNADSALSIMEALKSNPNFSHNQ 102
           ++ +     S L++ L+  F+   +TH     A   +  AD  L I E L ++     + 
Sbjct: 357 KTGAVEKAESALDEMLVMEFVPTPITHKFLVKAYSRSEKADKILQIHEKLVAS-GLELSL 415

Query: 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
           +  + L TV  +     + K ++ ++         V +  L++ Y T   +E  L T+++
Sbjct: 416 TVYNTLITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQ 475

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE----GAIPNSRTYTVMIEHLV 218
                   +  +YN ++   +  G   E +E   +++ E    G +PN+ TY +++    
Sbjct: 476 MFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDILVSGYG 535

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            +G     + +   +       T K Y +L+  +    +  EA+ LLN++   G+ P
Sbjct: 536 RVGNRKKTIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARELLNDLLTKGRIP 592



 Score = 45.8 bits (107), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 61/125 (48%)

Query: 96  PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLEL 155
           PN +   + L  L+      +   E + L+ +++    +  +  +  L+  Y   G+ + 
Sbjct: 483 PNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDILVSGYGRVGNRKK 542

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
            +    E   +  + + ++YN+++S YAK+GK  EA E    ++ +G IPNS TY ++  
Sbjct: 543 TIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARELLNDLLTKGRIPNSFTYDILTC 602

Query: 216 HLVNL 220
             +NL
Sbjct: 603 GWLNL 607



 Score = 43.9 bits (102), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 12/114 (10%)

Query: 506 MIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--- 562
           MI +GI+PDV T S ++Y F   G       LF  + + G++P+   +  +I +  K   
Sbjct: 1   MIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGR 60

Query: 563 YLSNSNLMP---------DAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
            +   NL           D  T   +   L+K G+ KEA  V E   K+N  P+
Sbjct: 61  VMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPN 114



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 79/422 (18%), Positives = 167/422 (39%), Gaps = 41/422 (9%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SY  +++   K+G+  EA     Q++  G   +  T T +++ L  +GK   A EVF  +
Sbjct: 47  SYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETI 106

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
             + +      Y  L++G+  + + + A+ +L +M  +   P        +    + G +
Sbjct: 107 LKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGML 166

Query: 293 QGANEFLREMLPDKRIKNV--------RYYEDGSDDDEDENDDNNSGVRI-AYGVQLKPW 343
             A + LREM+    + N          Y++ G  D  D+        R+    V     
Sbjct: 167 SKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDIL 226

Query: 344 LDPKALANTLDE------------WSPEVVSL--LADAKFVWTTRLVC-KVLRHFKSPET 388
           L+       +DE              P++V+   L D  F    +L    +++  K    
Sbjct: 227 LNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNI 286

Query: 389 AWHFFCWVAYQPGY----THDV-YALEKMLTI-LARHGHVELVDRLIAKLRSDGMRLPFS 442
            +    + A   G      +D  Y   +M+ + LA     E    ++ +++S G+     
Sbjct: 287 RFDVVAYNALIKGLLRLGKYDPRYVCSRMIELGLAPDCKTEDALDILNEMKSYGIMPNAV 346

Query: 443 TIRLIIDFY---GISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDA 499
           T  ++I      G  +KA++AL        +  PI+       +  L++  ++ ++    
Sbjct: 347 TYNILIGGLCKTGAVEKAESALDEMLVMEFVPTPIT-------HKFLVKAYSRSEKADKI 399

Query: 500 INVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
           + + E+++ SG+   +  ++ L+  F   G  +  + +   + + G+  D   +  LI+ 
Sbjct: 400 LQIHEKLVASGLELSLTVYNTLITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIRG 459

Query: 560 YC 561
           YC
Sbjct: 460 YC 461


>gi|242047668|ref|XP_002461580.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
 gi|241924957|gb|EER98101.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
          Length = 532

 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 14/134 (10%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS L+  L K     +A  +L  MI S   P+V T+ GL++ +A +GD   +  L  ++ 
Sbjct: 229 YSMLIDCLCKFGGHTEAREILNSMIQSRGNPNVATYGGLLHGYATKGDLVEMNNLIDLMV 288

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
           QNGV PD ++F + I AY K             +    LMPD  +   +   L K GR  
Sbjct: 289 QNGVRPDHHIFNIQIYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLCKIGRLD 348

Query: 591 EAAAVEERCEKIND 604
             AA+ + C+ I+D
Sbjct: 349 --AAMSQFCQMIDD 360



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 91/204 (44%), Gaps = 1/204 (0%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + H   S+     A+ I++ + S      N  T   L   L K   + E + ++  +  S
Sbjct: 197 LVHGYLSSGQLKEAVRILKQM-SRHGQPPNGVTYSMLIDCLCKFGGHTEAREILNSMIQS 255

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
           +       +  L+  Y+T GDL  + +  +   Q         +NI +  Y K G+  EA
Sbjct: 256 RGNPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHHIFNIQIYAYVKCGRLDEA 315

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
           + TF ++  +G +P+  +Y  MI+ L  +G+LD+A+  F  +    +      +  L+ G
Sbjct: 316 MLTFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDGLSPDIVVFTNLIHG 375

Query: 252 FVGVERFDEAKSLLNEMRDDGKFP 275
           F    ++++A+ L  EM D G  P
Sbjct: 376 FSMYGKWEKAEELFYEMMDRGIRP 399



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 68/318 (21%), Positives = 115/318 (36%), Gaps = 51/318 (16%)

Query: 36  YLRRAQLIDSIR-LAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKS 94
           YL   QL +++R L   S      + +    L+D             A   L+ M   + 
Sbjct: 201 YLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLC---KFGGHTEAREILNSMIQSRG 257

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLI--GDISSSKFLNVSVNFMNLMQWYSTSGD 152
           NPN +     LH  AT     + N+ +  ++  G        N+ +        Y   G 
Sbjct: 258 NPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHHIFNIQI------YAYVKCGR 311

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN------ 206
           L+  + T+N+ RQ+  +    SY  ++    K G+   A+  F Q+ID+G  P+      
Sbjct: 312 LDEAMLTFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDGLSPDIVVFTN 371

Query: 207 -----------------------------SRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
                                           +T MI+ L   GK+  A  +F  +P+  
Sbjct: 372 LIHGFSMYGKWEKAEELFYEMMDRGIRPTVVVFTTMIDKLFKEGKVTEAKTLFDLMPIAS 431

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGF---IQ 293
           +K     Y  ++ G+    + DE   LL++M   G  P        L+ M  MG    + 
Sbjct: 432 VKPNVVSYNAIIHGYFLAGKLDEVLKLLDDMLSVGLKPNAVTFNTLLDDMLSMGLKPDVA 491

Query: 294 GANEFLREMLPDKRIKNV 311
             N  +     D RI++V
Sbjct: 492 TCNTLIDSCCEDGRIEDV 509



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 91/439 (20%), Positives = 170/439 (38%), Gaps = 80/439 (18%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SY  V+  + K  +  +A   F +++D G  P+  T   +I+ L  +  +D A EV   +
Sbjct: 123 SYTTVIHGFFKEDEVGKAYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMDKAEEVLRQM 182

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFI 292
               I      Y  LV G++   +  EA  +L +M   G+ P G    + ++ + + G  
Sbjct: 183 FDKHIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLCKFGGH 242

Query: 293 QGANEFLREMLPDKRIKNVRYYED---GSDDDEDENDDNN-------SGVRI---AYGVQ 339
             A E L  M+  +   NV  Y     G     D  + NN       +GVR     + +Q
Sbjct: 243 TEAREILNSMIQSRGNPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHHIFNIQ 302

Query: 340 LKPWLDPKALANTLDEWS--------PEVVSLLADAKFVWTTRL--VCKVLRHFKSPETA 389
           +  ++    L   +  ++        P+++S        + T +  +CK+ R     + A
Sbjct: 303 IYAYVKCGRLDEAMLTFNKMRQQGLMPDIIS--------YGTMIDGLCKIGRL----DAA 350

Query: 390 WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID 449
              FC +    G + D+     ++   + +G  E  + L  ++   G+R        +ID
Sbjct: 351 MSQFCQM-IDDGLSPDIVVFTNLIHGFSMYGKWEKAEELFYEMMDRGIRPTVVVFTTMID 409

Query: 450 FYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS 509
                       K F + +                     +T+ K  FD       M  +
Sbjct: 410 ------------KLFKEGK---------------------VTEAKTLFDL------MPIA 430

Query: 510 GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNL 569
            + P+V +++ +++ + L G    V KL   +   G++P+A  F  L+      + +  L
Sbjct: 431 SVKPNVVSYNAIIHGYFLAGKLDEVLKLLDDMLSVGLKPNAVTFNTLLDD----MLSMGL 486

Query: 570 MPDAATKELLKKSLWKEGR 588
            PD AT   L  S  ++GR
Sbjct: 487 KPDVATCNTLIDSCCEDGR 505



 Score = 43.5 bits (101), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 74/175 (42%), Gaps = 6/175 (3%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T +++   L K Q   + + ++  +     +     + +L+  Y +SG L+  +    + 
Sbjct: 158 TCNSIIDGLCKVQAMDKAEEVLRQMFDKHIMPDCTTYNSLVHGYLSSGQLKEAVRILKQM 217

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
            +  +  +  +Y++++    K G + EA E    +I     PN  TY  ++      G L
Sbjct: 218 SRHGQPPNGVTYSMLIDCLCKFGGHTEAREILNSMIQSRGNPNVATYGGLLHGYATKGDL 277

Query: 224 DSALEVFSALPLM---RIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              +E+ + + LM    ++     + I +  +V   R DEA    N+MR  G  P
Sbjct: 278 ---VEMNNLIDLMVQNGVRPDHHIFNIQIYAYVKCGRLDEAMLTFNKMRQQGLMP 329


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 79/167 (47%), Gaps = 1/167 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + + +L+     SG +   L   +E   R +     +YN ++    K     +A+    +
Sbjct: 509 ITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTK 568

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +  +G  P+  TYT++++ L   GKL+ A +VF  L +         Y ++++GF     
Sbjct: 569 LKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGL 628

Query: 258 FDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREML 303
           FDEA +LL++M ++G  P  +   + +  + E      A + LREM+
Sbjct: 629 FDEALALLSKMEENGCIPDAKTYEIIILSLFEKDENDMAEKLLREMI 675



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 71/376 (18%), Positives = 149/376 (39%), Gaps = 69/376 (18%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN ++S +   GK  +A++ F ++  +  IP+  T++++++     G +  A  V + +
Sbjct: 370 TYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMM 429

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFI 292
               IK     Y  L++G+  V   ++A+S+ N M   G     ++  + +    ++  +
Sbjct: 430 MKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMV 489

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
             A +  +EM   +   +V  Y    D          SG RI+Y ++L            
Sbjct: 490 DEAMKLFKEMHHKQIFPDVITYSSLID------GLCKSG-RISYALEL------------ 530

Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
           +DE                          H++              QP    D+     +
Sbjct: 531 VDEM-------------------------HYRGQ------------QP----DIITYNSI 549

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
           L  L +  HV+    L+ KL+  G+R   +T  +++     S K + A K F D      
Sbjct: 550 LDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFED------ 603

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDF--DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
            + K   + +Y+  +     C +    +A+ +L +M  +G +PD +T+  ++     + +
Sbjct: 604 LLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILSLFEKDE 663

Query: 531 EKIVQKLFSMVRQNGV 546
             + +KL   +   G+
Sbjct: 664 NDMAEKLLREMIMRGL 679



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 45/83 (54%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +++Y++++  + K K   DA ++  E +   I PDV T++ L+  F + G  K    LF+
Sbjct: 333 VVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFN 392

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK 562
            +    + PD Y F +L+  +CK
Sbjct: 393 KMTSKNIIPDVYTFSILVDGFCK 415



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/167 (20%), Positives = 78/167 (46%), Gaps = 1/167 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V + +LM  Y    ++    S +N    R    + +SYNI+++ + K     EA++ F++
Sbjct: 439 VTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKE 498

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +  +   P+  TY+ +I+ L   G++  ALE+   +     +     Y  +++       
Sbjct: 499 MHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHH 558

Query: 258 FDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREML 303
            D+A +LL +++  G  P      + ++ + + G ++ A +   ++L
Sbjct: 559 VDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLL 605



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/161 (20%), Positives = 73/161 (45%), Gaps = 1/161 (0%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  +   G L+  +  +N+   +  +    +++I++  + K G   EA      ++ + 
Sbjct: 374 LISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQS 433

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  TY+ +++    + +++ A  +F+ +    +    + Y I++ GF  ++  DEA 
Sbjct: 434 IKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAM 493

Query: 263 SLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREM 302
            L  EM     FP      +L + + + G I  A E + EM
Sbjct: 494 KLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEM 534



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 83/207 (40%), Gaps = 20/207 (9%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           DVY    ++    + G+++    ++A +    ++    T   ++D Y +  + + A   F
Sbjct: 402 DVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIF 461

Query: 465 H--DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
           +    R +   +  + +M+          K K   +A+ + +EM    I PDV T+S L+
Sbjct: 462 NTMSHRGVTANVQSYNIMI------NGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLI 515

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLM 570
                 G      +L   +   G +PD   +  ++ A CK             L    + 
Sbjct: 516 DGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIR 575

Query: 571 PDAATKELLKKSLWKEGRRKEAAAVEE 597
           PD  T  +L K L + G+ ++A  V E
Sbjct: 576 PDMNTYTILVKGLCQSGKLEDARKVFE 602



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 42/79 (53%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++L+       +  DAI++  +M    I+PDV TFS L+  F   G+ K  + + +M+ 
Sbjct: 371 YNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMM 430

Query: 543 QNGVEPDAYMFKVLIQAYC 561
           +  ++PD   +  L+  YC
Sbjct: 431 KQSIKPDVVTYSSLMDGYC 449



 Score = 46.6 bits (109), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 12/119 (10%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y+S+L  L K      AI +L ++   GI PD+ T++ L+      G  +  +K+F 
Sbjct: 543 IITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFE 602

Query: 540 MVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKE 586
            +   G   D Y + V+IQ +C              +  +  +PDA T E++  SL+++
Sbjct: 603 DLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILSLFEK 661


>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 10/150 (6%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI----PNSRTYTVMIEHLVNLGKLDSA 226
           + +S+N V++V  + G    A+E +  VID  +     PN  ++ ++I+ L  +G +D A
Sbjct: 135 TVKSFNTVLNVVIQEGCFDLALEFYNHVIDSNSFSNIQPNGLSFNLVIKALCRVGNVDQA 194

Query: 227 LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALER 285
           +EVF  +           Y  L+ G     R DEA SLL+EM+ +G FP   A  V +  
Sbjct: 195 VEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPVAFNVLISA 254

Query: 286 MQEMGFIQGA-----NEFLREMLPDKRIKN 310
           + + G +  A     N FL+  +P++   N
Sbjct: 255 LCKKGDLSRASKLVDNMFLKGCVPNEVTYN 284



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/202 (19%), Positives = 85/202 (42%), Gaps = 1/202 (0%)

Query: 74  HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKF 133
           H L +    D A+S+++ ++    F  N    + L + L K         L+ ++     
Sbjct: 218 HGLCNEGRIDEAVSLLDEMQVEGTFP-NPVAFNVLISALCKKGDLSRASKLVDNMFLKGC 276

Query: 134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE 193
           +   V + +L+      G L+  +S  N       + +  ++  ++  + K G+  + V 
Sbjct: 277 VPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVR 336

Query: 194 TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
               + ++G   N  +Y+ +I  L   GK +  ++++  +     K  +  Y  L++G  
Sbjct: 337 VLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLC 396

Query: 254 GVERFDEAKSLLNEMRDDGKFP 275
              + DEAK  L EM++ G  P
Sbjct: 397 REGKPDEAKEYLIEMKNKGHTP 418



 Score = 46.2 bits (108), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 29/133 (21%), Positives = 58/133 (43%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  LM      G ++  +S  +E +      +  ++N+++S   K G    A +    + 
Sbjct: 213 YSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMF 272

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
            +G +PN  TY  ++  L   GKLD A+ + + +   +       +  LV+GFV   R  
Sbjct: 273 LKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRAL 332

Query: 260 EAKSLLNEMRDDG 272
           +   +L  + + G
Sbjct: 333 DGVRVLVSLEEKG 345



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 3/151 (1%)

Query: 128 ISSSKFLNVSVN---FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK 184
           I S+ F N+  N   F  +++     G+++  +  +     R  +    +Y+ +M     
Sbjct: 163 IDSNSFSNIQPNGLSFNLVIKALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCN 222

Query: 185 TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQ 244
            G+  EAV    ++  EG  PN   + V+I  L   G L  A ++   + L         
Sbjct: 223 EGRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVT 282

Query: 245 YLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           Y  LV G     + D+A SLLN M  +   P
Sbjct: 283 YNSLVHGLCLKGKLDKAMSLLNRMVANKCVP 313



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 48/233 (20%), Positives = 88/233 (37%), Gaps = 2/233 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           +V  AL    N D A+ +   + S+ N   +  T   L   L    R  E  +L+ ++  
Sbjct: 180 LVIKALCRVGNVDQAVEVFRGM-SDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQV 238

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                  V F  L+      GDL       +    +  + +  +YN ++      GK  +
Sbjct: 239 EGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDK 298

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A+    +++    +PN  T+  +++  V  G+    + V  +L     +     Y  L+ 
Sbjct: 299 AMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLIS 358

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREM 302
           G     + +    L  EM + G  P   +  AL + +   G    A E+L EM
Sbjct: 359 GLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEM 411



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/107 (22%), Positives = 50/107 (46%)

Query: 162 EYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG 221
           E + +    ++ +Y+ +M  Y + G   +A+  ++++ D     +   Y+++I  L   G
Sbjct: 410 EMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNG 469

Query: 222 KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           KL  AL V+  +    IK     Y  ++ GF   +  ++   L N+M
Sbjct: 470 KLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQM 516



 Score = 40.0 bits (92), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 6/174 (3%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG---DLELVL 157
           N+ T ++L   L    +  +  +L+  + ++K +   + F  L+  +   G   D   VL
Sbjct: 279 NEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVL 338

Query: 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217
            +  E   R    S   Y+ ++S   K GK    ++ +++++++G  PN+  Y+ +I+ L
Sbjct: 339 VSLEEKGYRGNEFS---YSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGL 395

Query: 218 VNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
              GK D A E    +        S  Y  L+ G+       +A  +  EM D+
Sbjct: 396 CREGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDN 449


>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
 gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 642

 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/394 (18%), Positives = 160/394 (40%), Gaps = 37/394 (9%)

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
           T +Y+ ++S Y K G+N  A+  F ++ D    P  + YT ++     +GK++ AL++F 
Sbjct: 233 TITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFE 292

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA-MRVALERMQEMG 290
            +       T   Y  L++G     R DEA     +M  DG  P    +   +  + ++G
Sbjct: 293 EMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVG 352

Query: 291 FIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALA 350
            ++       EM   +    V                      ++Y   +K   + KA  
Sbjct: 353 RVEELTNVFSEMGMWRCTPTV----------------------VSYNTVIKALFESKAHV 390

Query: 351 NTLDEWSPEV-VSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY 407
           + +  W  ++    ++ ++F ++  +   CK  R  K+             + G+     
Sbjct: 391 SEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKA-----LLLLEEMDEKGFPPCPA 445

Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDD 467
           A   ++  L +    E  + L  +L+ +   +      ++I  +G   K   A+  F++ 
Sbjct: 446 AYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEM 505

Query: 468 RTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
           +    GP      +  Y++L+  + K     +A ++L +M  +G   D+ + + ++  FA
Sbjct: 506 KNQGSGPD-----VYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFA 560

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
             G  +   ++F  ++ +G++PD   +  L+  +
Sbjct: 561 RTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCF 594



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 92/200 (46%), Gaps = 2/200 (1%)

Query: 105 LHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYR 164
           L+ L  +L K  R  EL  +  ++   +     V++  +++    S      +S+W +  
Sbjct: 341 LNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKM 400

Query: 165 QRAKLLSTE-SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
           +   +  +E +Y+I++  Y KT +  +A+    ++ ++G  P    Y  +I  L    + 
Sbjct: 401 KADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRY 460

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVA 282
           ++A E+F  L       +S+ Y ++++ F    +  EA  L NEM++ G  P   A    
Sbjct: 461 EAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNAL 520

Query: 283 LERMQEMGFIQGANEFLREM 302
           +  M + G I  AN  LR+M
Sbjct: 521 MSGMVKAGMINEANSLLRKM 540



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 81/191 (42%), Gaps = 3/191 (1%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           + AL ++E +     F    +   +L   L K++R      L  ++  + F NVS     
Sbjct: 426 EKALLLLEEM-DEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKEN-FGNVSSRVYA 483

Query: 143 LM-QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
           +M + +   G L   +  +NE + +       +YN +MS   K G   EA    R++ + 
Sbjct: 484 VMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEEN 543

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G   +  ++ +++      G    A+E+F  +    IK     Y  L+  F     F+EA
Sbjct: 544 GCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEA 603

Query: 262 KSLLNEMRDDG 272
             ++ EM+D G
Sbjct: 604 ARMMREMKDKG 614



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 59/130 (45%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  Y  +  +E  L    E  ++       +Y  +++   K  +   A E F+++ +  
Sbjct: 415 LIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENF 474

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
              +SR Y VMI+H    GKL  A+++F+ +           Y  L+ G V     +EA 
Sbjct: 475 GNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEAN 534

Query: 263 SLLNEMRDDG 272
           SLL +M ++G
Sbjct: 535 SLLRKMEENG 544



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 93/253 (36%), Gaps = 20/253 (7%)

Query: 355 EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT 414
           +W P+    L   K     RLV  +L           FF W   +  + HD      ++ 
Sbjct: 75  KWGPDAEKALEVLKLKVDHRLVRSILEIDVEINVKIQFFKWAGKRRNFQHDCSTYMTLIR 134

Query: 415 ILARHG-HVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CG 472
            L     + E+   +   +R+  + +  + +  ++   G +K    AL  F+  +   C 
Sbjct: 135 CLEEARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQAKGRKCK 194

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSG-IVPDVQTFSGLMYHFALQGDE 531
           P S       Y+S++  L +  +      V  EM   G   PD  T+S L+  +   G  
Sbjct: 195 PTSS-----TYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRN 249

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELL 579
               +LF  ++ N ++P   ++  L+  Y K             +  +   P   T   L
Sbjct: 250 DSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTEL 309

Query: 580 KKSLWKEGRRKEA 592
            K L K GR  EA
Sbjct: 310 IKGLGKAGRVDEA 322



 Score = 43.1 bits (100), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 66/159 (41%), Gaps = 16/159 (10%)

Query: 447 IIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
           +I+  G +K+ +AA + F + +   G +S      +Y+ +++   KC +  +A+++  EM
Sbjct: 450 LINALGKAKRYEAANELFKELKENFGNVSS----RVYAVMIKHFGKCGKLSEAVDLFNEM 505

Query: 507 IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK---- 562
              G  PDV  ++ LM      G       L   + +NG   D     +++  + +    
Sbjct: 506 KNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVP 565

Query: 563 --------YLSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
                    + +S + PD  T   L       G  +EAA
Sbjct: 566 RRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAA 604


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 84/439 (19%), Positives = 175/439 (39%), Gaps = 51/439 (11%)

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
           +++ L  + E+ +     +T SYNI+     + G+  EA +   Q+   G IP+  +Y+ 
Sbjct: 234 IKIALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYST 293

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +I     +G+L   L++   + +  +K     Y  ++       +  EA+ +L EM  +G
Sbjct: 294 VINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEG 353

Query: 273 KFP-GRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY--------EDGSDDDED 323
             P G      ++   ++G +  A     EM   K   +   Y        + G   + D
Sbjct: 354 IAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEAD 413

Query: 324 -----------ENDDNNSGVRIAYGVQLKPWLDPKALANTLDEW--SPEVVSL--LADAK 368
                      E D+      I    +     +  +L N + +   +P +V+   LAD  
Sbjct: 414 KLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADG- 472

Query: 369 FVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRL 428
                  +CK      +     H  C    + G   ++Y    ++  L + G+++   +L
Sbjct: 473 -------LCKC-GEVDTANELLHEMC----RKGLELNIYTYNSLVNGLCKAGNIDQAVKL 520

Query: 429 IAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD--DRTLCGPISKFKLML---LY 483
           +  +   G      T   ++D Y  S++   A +      DR L   +  F +++     
Sbjct: 521 MKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCM 580

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           S +L          D   +L+ M+  GI+P+  T++ L+  + ++ + +   +++  +  
Sbjct: 581 SGMLE---------DGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCA 631

Query: 544 NGVEPDAYMFKVLIQAYCK 562
            GV PD   + +LI+ +CK
Sbjct: 632 KGVVPDGNTYNILIKGHCK 650



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 9/149 (6%)

Query: 120 ELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM 179
           EL+  I D+         +++  ++  Y   G+L+ VL    E + +    +  +YN V+
Sbjct: 280 ELRGCIPDV---------ISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVI 330

Query: 180 SVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIK 239
            +  KTGK  EA    R++I EG  P+   YT +I+    LG + SA  +F  +   +I 
Sbjct: 331 LLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKIS 390

Query: 240 RTSKQYLILVEGFVGVERFDEAKSLLNEM 268
                Y  ++ G     R  EA  L +EM
Sbjct: 391 PDFITYTAVICGLCQTGRVMEADKLFHEM 419



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 89/463 (19%), Positives = 176/463 (38%), Gaps = 58/463 (12%)

Query: 169 LLSTESYNIVMSVYAKTGKNFE-AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227
           L+S +S N+ +S  ++     + A++ F +  + G   N+ +Y ++   L  LG++  A 
Sbjct: 214 LISVDSCNLFISHLSEDLDGIKIALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAH 273

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERM 286
           ++   + L         Y  ++ G+  V        L+ EM+  G  P        +  +
Sbjct: 274 QLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLL 333

Query: 287 QEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDP 346
            + G +  A   LREM+ +    +   Y    D      +       ++   +L   +  
Sbjct: 334 CKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGN-------VSSAYRLFDEMQK 386

Query: 347 KALANTLDEWSPEVVSLLADAKFVWTTRL----VCKVLRHFKSPETAW-HFFCWVA---- 397
           + ++     ++  +  L    + +   +L    VCK L   +   TA    +C       
Sbjct: 387 RKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKE 446

Query: 398 --------YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID 449
                    Q G T ++     +   L + G V+  + L+ ++   G+ L   T   +++
Sbjct: 447 AFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVN 506

Query: 450 FYGISKKADAALK--------AFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAIN 501
               +   D A+K         FH D             + Y++L+    K +    A  
Sbjct: 507 GLCKAGNIDQAVKLMKDMEVAGFHPD------------AVTYTTLMDAYCKSREMVRAHE 554

Query: 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           +L +M+   + P V TF+ LM  F + G  +  +KL   + + G+ P+A  +  LI+ YC
Sbjct: 555 LLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYC 614

Query: 562 ------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                       + +    ++PD  T  +L K   K    KEA
Sbjct: 615 IRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEA 657



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 82/184 (44%), Gaps = 6/184 (3%)

Query: 89  MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS 148
           ++ LK NP +++N   L     +L K+ +  E + ++ ++ S       V +  L+  + 
Sbjct: 316 IKGLKPNP-YTYNGVIL-----LLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFC 369

Query: 149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSR 208
             G++      ++E ++R       +Y  V+    +TG+  EA + F +++ +   P+  
Sbjct: 370 KLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEV 429

Query: 209 TYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           TYT +I+     GK+  A  + + +  M +      Y  L +G       D A  LL+EM
Sbjct: 430 TYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEM 489

Query: 269 RDDG 272
              G
Sbjct: 490 CRKG 493



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 83/208 (39%), Gaps = 1/208 (0%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + + L  A N D A+ +M+ ++    F  +  T   L     KS+       L+  +   
Sbjct: 504 LVNGLCKAGNIDQAVKLMKDMEV-AGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDR 562

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
           +     V F  LM  +  SG LE          ++  + +  +YN ++  Y         
Sbjct: 563 ELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRAT 622

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
            E +R +  +G +P+  TY ++I+       +  A  +   +       T   Y  L++G
Sbjct: 623 TEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKG 682

Query: 252 FVGVERFDEAKSLLNEMRDDGKFPGRAM 279
           F   ++F EA+ L  +MR +G    R +
Sbjct: 683 FYKRKKFLEARELFEQMRREGLVADREI 710



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 12/139 (8%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ ++  L K  +  +A  VL EMI  GI PD   ++ L+  F   G+     +LF  ++
Sbjct: 326 YNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQ 385

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
           +  + PD   +  +I   C+             +    L PD  T   L     KEG+ K
Sbjct: 386 KRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMK 445

Query: 591 EAAAVEERCEKINDVPSLA 609
           EA ++  +  ++   P++ 
Sbjct: 446 EAFSLHNQMLQMGLTPNIV 464



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 46/236 (19%), Positives = 95/236 (40%), Gaps = 6/236 (2%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNP 96
           LID      +   + SL + +    L P IVT+      L      D+A  ++  +    
Sbjct: 434 LIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEM-CRK 492

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
               N  T ++L   L K+    +   L+ D+  + F   +V +  LM  Y  S ++   
Sbjct: 493 GLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRA 552

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
                +   R    +  ++N++M+ +  +G   +  +  + ++++G +PN+ TY  +I+ 
Sbjct: 553 HELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQ 612

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
                 + +  E++  +    +      Y IL++G        EA  L  +M   G
Sbjct: 613 YCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKG 668


>gi|449449102|ref|XP_004142304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial-like [Cucumis sativus]
 gi|449510601|ref|XP_004163711.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial-like [Cucumis sativus]
          Length = 849

 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 2/182 (1%)

Query: 102 QSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWN 161
            STL  L   L K+ R  E    + D+    FL   V++   M        L+  L  + 
Sbjct: 562 HSTL--LVKQLCKNGRAIEASNFLADMVCEGFLPDIVSYSAAMDGLVKINKLDRALELFQ 619

Query: 162 EYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG 221
           +   R       S+NI++  Y K GK  EA     ++   G +P++ +Y ++I      G
Sbjct: 620 DICTRGCRPDVVSHNILIKGYCKAGKVNEAYNFLHKMRVAGLVPSAVSYNLLINEWCKNG 679

Query: 222 KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRV 281
            +D A+   S +     K T   Y  L+ G     R D+AK L NEM++ G  P R   +
Sbjct: 680 DIDKAILCLSQMNEENKKPTIISYTTLINGCCNSGRPDDAKILWNEMQEKGCSPNRITYM 739

Query: 282 AL 283
           A+
Sbjct: 740 AI 741



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 79/166 (47%), Gaps = 6/166 (3%)

Query: 113 AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE---LVLSTWNEYRQRAKL 169
            K+ + +E    +  +  +  +  +V++  L+  +  +GD++   L LS  NE  ++  +
Sbjct: 641 CKAGKVNEAYNFLHKMRVAGLVPSAVSYNLLINEWCKNGDIDKAILCLSQMNEENKKPTI 700

Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           +S   Y  +++    +G+  +A   + ++ ++G  PN  TY  ++  L   GK D AL  
Sbjct: 701 IS---YTTLINGCCNSGRPDDAKILWNEMQEKGCSPNRITYMAIVHGLCKCGKPDEALVY 757

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           + ++    +K  S   + L++ F+    F  A ++L E  + G  P
Sbjct: 758 YHSMEEKEMKPDSYVSVALIDAFISKHNFSMAFNILKETIEKGNIP 803


>gi|147779268|emb|CAN70089.1| hypothetical protein VITISV_038171 [Vitis vinifera]
          Length = 838

 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 106/232 (45%), Gaps = 26/232 (11%)

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA--A 460
           T D YAL  +L      G +E  + + A++R  G   P S +       G+ K  D   A
Sbjct: 132 TEDTYAL--LLKAYCTSGLLEKAEAVFAEMRKYG--FPPSAVVYNAYIDGLMKGGDTQKA 187

Query: 461 LKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           ++ F    R  C P +       Y+ L+    K  + + A+ V  EM      P++ TF+
Sbjct: 188 VEIFERMKRDRCQPSTA-----TYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFT 242

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNS 567
            L+  FA +G  +  +++F  +++ G+EPD Y +  L++AY +             + + 
Sbjct: 243 ALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHM 302

Query: 568 NLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAVSS 619
              PD A+  ++  +  + G  ++A AV E  +++   P+  ++ H+  +S+
Sbjct: 303 GCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPT--MKSHMLLLSA 352



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 83/395 (21%), Positives = 151/395 (38%), Gaps = 48/395 (12%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L++ Y TSG LE   + + E R+     S   YN  +    K G   +AVE F ++  + 
Sbjct: 139 LLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDR 198

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P++ TYT++I       K   AL+VF  +   + K     +  LV  F      ++A+
Sbjct: 199 CQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAE 258

Query: 263 SLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREML-----PDKRIKNV---RY 313
            +  ++++ G  P   A    +E     GF  GA E    M      PD+   N+    Y
Sbjct: 259 EIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAY 318

Query: 314 YEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTT 373
              G  +D           +  + V  +  + P   ++ L      ++S  + A  V   
Sbjct: 319 GRAGLHED----------AQAVFEVMKRLGITPTMKSHML------LLSAYSRAGKVAKC 362

Query: 374 RLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
             +   +                 ++ G   D + L  ML +  R G  E ++ ++  + 
Sbjct: 363 EEIVNQM-----------------HKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAME 405

Query: 434 SDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKF-KLMLLYSSLLRTLTK 492
                   ST  ++I+ YG      A   A  ++     P       ++ ++S +   ++
Sbjct: 406 KGPYPADISTYNILINIYG-----RAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSR 460

Query: 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
            K+    + V EEMI +G  PD  T   ++   A+
Sbjct: 461 RKQYNRCLEVFEEMIDAGCYPDGGTAKNVLLKVAI 495



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/201 (18%), Positives = 84/201 (41%), Gaps = 1/201 (0%)

Query: 75  ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFL 134
            L    +   A+ I E +K +     + +T   L  +  K+ +++    +  ++ S K  
Sbjct: 177 GLMKGGDTQKAVEIFERMKRD-RCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCK 235

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
                F  L+  ++  G  E     + + ++        +YN +M  Y++ G  + A E 
Sbjct: 236 PNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEI 295

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
           F  +   G  P+  +Y +M++     G  + A  VF  +  + I  T K +++L+  +  
Sbjct: 296 FSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSR 355

Query: 255 VERFDEAKSLLNEMRDDGKFP 275
             +  + + ++N+M   G  P
Sbjct: 356 AGKVAKCEEIVNQMHKSGIKP 376


>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1163

 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 38/188 (20%)

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           V +VLR  K+P  A  FF W A + G+TH+  +   ML IL R  ++ +    +      
Sbjct: 89  VFEVLRLIKTPSKALQFFNW-APELGFTHNDQSYFLMLEILGRARNLNVARNFL------ 141

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR 495
                          + I ++++  +K   +DR              ++SL+R+  K   
Sbjct: 142 ---------------FSIKRRSNGTVKL--EDR-------------FFNSLIRSYGKAGL 171

Query: 496 DFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF-SMVRQNGVEPDAYMFK 554
             +++ V   M   G+ P V TF+ L+     +G   + Q +F  M+   GV PD Y F 
Sbjct: 172 FQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRTNMAQSVFDEMLSTYGVTPDTYTFN 231

Query: 555 VLIQAYCK 562
           +LI+ +CK
Sbjct: 232 ILIRGFCK 239



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 70/159 (44%), Gaps = 9/159 (5%)

Query: 126 GDISSSKFLNVSV-NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK 184
           G +  S  LN  V  +  L++ Y    +++  L  + E   +    +  +YN ++    +
Sbjct: 287 GMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSKGLKPNEITYNTLIKGLCE 346

Query: 185 TGKNFEAVETFRQVIDEGA-IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
             K  +  + F   +  G  IP++ T   ++    N G L+ ALEVF  + ++ ++  S 
Sbjct: 347 VQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAHCNAGNLNDALEVFEKMMVLNVRPDSA 406

Query: 244 QYLILVEGFVGVERFDEAKSLLNE-------MRDDGKFP 275
            Y +L+        F+ A+ L +E       +RDDG  P
Sbjct: 407 TYSVLIRNLCQRGNFERAEQLFDELSEKEILLRDDGCTP 445


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 87/402 (21%), Positives = 165/402 (41%), Gaps = 20/402 (4%)

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
           GK  +A    R+++ +G IP+S TY+ +I +L N  K++ A ++F  +    I      Y
Sbjct: 101 GKFEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTY 160

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLP 304
             L++ F  V   ++A++  +EM+ DG  P      AL     +   +  ANE    ML 
Sbjct: 161 TTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLS 220

Query: 305 DKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLL 364
           +  + N+  Y     D   +  +     +I   ++     + K     +D +   V S L
Sbjct: 221 NGCVPNIVTYT-ALIDGHCKAGETEKACQIYARMK-----NDKVDIPDVDIYFRIVDSEL 274

Query: 365 ADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVEL 424
            +   V    LV  + +  K  E A      ++ + G   +    + ++    + G ++ 
Sbjct: 275 KEPNVVTYGALVDGLCKAHKVKE-ARDLLETMSLE-GCEPNQIIYDALIDGFCKVGKLDE 332

Query: 425 VDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDD-RTLCGPISKFKLMLLY 483
              +  K+   G      T   +ID     K+ D ALK         C P      +++Y
Sbjct: 333 AQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPN-----VVIY 387

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           + ++  L K  +  +A  ++  M   G  P+V T++ ++  F   G      +L  ++  
Sbjct: 388 TEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTS 447

Query: 544 NGVEPDAYMFKVLIQAYCKYLSNSNLMPDA-ATKELLKKSLW 584
            G  P+   ++VLI   C     + L+ DA    E +K++ W
Sbjct: 448 KGCAPNFITYRVLINHCCA----AGLLDDAHKLLEEMKQTYW 485



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 14/129 (10%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           Y+ ++  + K GK  EA E F +++  G  PN  TY+ +I+ L    +LD AL+V + + 
Sbjct: 317 YDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKML 376

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP------------GRAMRV- 281
                     Y  +V+G   V + DEA  L+  M + G +P            G+A RV 
Sbjct: 377 ENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVD 436

Query: 282 -ALERMQEM 289
             LE +Q M
Sbjct: 437 RCLELLQLM 445



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 54/260 (20%), Positives = 104/260 (40%), Gaps = 19/260 (7%)

Query: 73  THALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSK 132
           T  L      + A +++  + S   F  + ST   +   L  + +  +   L  ++  + 
Sbjct: 94  TRCLCCIGKFEKAYNVIREMMSK-GFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNG 152

Query: 133 FLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV 192
                  +  L+  +   G +E   + ++E +Q     +  +Y  ++  Y KT K   A 
Sbjct: 153 ITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRAN 212

Query: 193 ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP-----------LMRIKRT 241
           E F  ++  G +PN  TYT +I+     G+ + A ++++ +              RI  +
Sbjct: 213 EIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDS 272

Query: 242 SKQ------YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQG 294
             +      Y  LV+G     +  EA+ LL  M  +G  P + +  AL +   ++G +  
Sbjct: 273 ELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDE 332

Query: 295 ANEFLREMLPDKRIKNVRYY 314
           A E   +ML      NV  Y
Sbjct: 333 AQEVFTKMLGHGCSPNVYTY 352



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 12/128 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS ++  L    +   A  + +EM  +GI PDV T++ L+  F   G  +  +  F  ++
Sbjct: 125 YSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQ 184

Query: 543 QNGVEPDAYMFKVLIQAYCKY--LSNSN----------LMPDAATKELLKKSLWKEGRRK 590
           Q+G  P+   +  LI AY K   LS +N           +P+  T   L     K G  +
Sbjct: 185 QDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETE 244

Query: 591 EAAAVEER 598
           +A  +  R
Sbjct: 245 KACQIYAR 252



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 2/102 (1%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y  ++  + K G+    +E  + +  +G  PN  TY V+I H    G LD A ++   +
Sbjct: 421 TYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEM 480

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                 +    Y  ++EGF     F  +  LL E+ +DG  P
Sbjct: 481 KQTYWPKHIGMYRKVIEGF--SHEFVASLGLLAELSEDGSVP 520



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
            K GK  EA      + ++G  PN  TYT MI+     G++D  LE+   L LM  K  +
Sbjct: 395 CKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLEL---LQLMTSKGCA 451

Query: 243 KQYL---ILVEGFVGVERFDEAKSLLNEMR 269
             ++   +L+         D+A  LL EM+
Sbjct: 452 PNFITYRVLINHCCAAGLLDDAHKLLEEMK 481


>gi|297737955|emb|CBI27156.3| unnamed protein product [Vitis vinifera]
          Length = 625

 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 100/221 (45%), Gaps = 24/221 (10%)

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA--A 460
           T D YAL  +L      G +E  + + A++R  G   P S +       G+ K  D   A
Sbjct: 240 TEDTYAL--LLKAYCTSGLLEKAEAVFAEMRKYG--FPPSAVVYNAYIDGLMKGGDTQKA 295

Query: 461 LKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           ++ F    R  C P +       Y+ L+    K  + + A+ V  EM      P++ TF+
Sbjct: 296 VEIFERMKRDRCQPSTA-----TYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFT 350

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNS 567
            L+  FA +G  +  +++F  +++ G+EPD Y +  L++AY +             + + 
Sbjct: 351 ALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHM 410

Query: 568 NLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
              PD A+  ++  +  + G  ++A AV E  +++   P++
Sbjct: 411 GCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTM 451



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 87/410 (21%), Positives = 161/410 (39%), Gaps = 51/410 (12%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L++ Y TSG LE   + + E R+     S   YN  +    K G   +AVE F ++  + 
Sbjct: 247 LLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDR 306

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P++ TYT++I       K   AL+VF  +   + K     +  LV  F      ++A+
Sbjct: 307 CQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAE 366

Query: 263 SLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREML-----PDKRIKNV---RY 313
            +  ++++ G  P   A    +E     GF  GA E    M      PD+   N+    Y
Sbjct: 367 EIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAY 426

Query: 314 YEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTT 373
              G  +D           +  + V  +  + P   ++ L      ++S  + A  V   
Sbjct: 427 GRAGLHED----------AQAVFEVMKRLGITPTMKSHML------LLSAYSRAGKVAKC 470

Query: 374 RLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
             +   +                 ++ G   D + L  ML +  R G  E ++ ++  + 
Sbjct: 471 EEIVNQM-----------------HKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAME 513

Query: 434 SDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKF-KLMLLYSSLLRTLTK 492
                   ST  ++I+ YG      A   A  ++     P       ++ ++S +   ++
Sbjct: 514 KGPYPADISTYNILINIYG-----RAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSR 568

Query: 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
            K+    + V EEMI +G  PD  T   L+   +  GD+  +Q++ +++R
Sbjct: 569 RKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACS-NGDQ--IQEVTTVIR 615



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/201 (18%), Positives = 84/201 (41%), Gaps = 1/201 (0%)

Query: 75  ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFL 134
            L    +   A+ I E +K +     + +T   L  +  K+ +++    +  ++ S K  
Sbjct: 285 GLMKGGDTQKAVEIFERMKRD-RCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCK 343

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
                F  L+  ++  G  E     + + ++        +YN +M  Y++ G  + A E 
Sbjct: 344 PNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEI 403

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
           F  +   G  P+  +Y +M++     G  + A  VF  +  + I  T K +++L+  +  
Sbjct: 404 FSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSR 463

Query: 255 VERFDEAKSLLNEMRDDGKFP 275
             +  + + ++N+M   G  P
Sbjct: 464 AGKVAKCEEIVNQMHKSGIKP 484


>gi|168062855|ref|XP_001783392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665090|gb|EDQ51786.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 540

 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 83/427 (19%), Positives = 170/427 (39%), Gaps = 39/427 (9%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YNI++  Y K G   +A++ F Q+ DEG +P+S TY  ++     +G +D   E    + 
Sbjct: 97  YNILILEYGKRGNFSQAMKYFSQLKDEGLLPDSGTYCAVLSACRKVGNIDKGNETLKEMR 156

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQ 293
              IK     Y IL++ F    R ++A +   E++  G  P   A    +    ++G + 
Sbjct: 157 EAGIKPDQVAYSILIDMFGKAGRHEDAAATFRELQMSGYLPDSVAYNTLIHAFAKVGMVD 216

Query: 294 GANEFLRE-----MLPDKRI--KNVRYYEDGSDDDEDEN------DDNNSGVRIAYGVQL 340
            A    +E      L D  I    ++ Y      D+  +      +       + YG  L
Sbjct: 217 QATLVFKEAQRSFCLDDPVIFYTMIQVYAKARMADQALHVLKLMKEIGLQPNELGYGSVL 276

Query: 341 KPWL---DPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVA 397
             ++    P       +E   E      ++ ++    +  K   H  + E          
Sbjct: 277 NAFMRANQPMGAIKLFEEMQ-ESNCRFGESTYITMLNVYSKAGFHSAAEELLAKM----- 330

Query: 398 YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA 457
            Q G+  +V A   ++ +  + G ++   RL + ++  G +        ++D YG + + 
Sbjct: 331 RQLGFRRNVVAYSTLIDMYGKVGKLQEATRLFSTMKQQGCKGNLIVYNTMLDMYGKAGR- 389

Query: 458 DAALKAFHDDRTLCGPISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
                  +D   L   +   KL+   + Y++L+    +  R  + I V E+    G+  D
Sbjct: 390 ------INDAERLMAELKDSKLVPDTVTYTTLINAYNRLGRFEECIRVFEQHRADGLKLD 443

Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAA 574
               + ++  +        + +L  ++ ++G++PD  + K +++ Y     +  +  +AA
Sbjct: 444 RILVAIMINVYGKARQYSKLAELLEVMPKSGIQPDTRILKTVVEIY----EDGGMCENAA 499

Query: 575 TKELLKK 581
             ELL+K
Sbjct: 500 --ELLRK 504



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/232 (20%), Positives = 99/232 (42%), Gaps = 2/232 (0%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           V +A   A     A+ + E ++ + N    +ST   +  V +K+  +   + L+  +   
Sbjct: 275 VLNAFMRANQPMGAIKLFEEMQES-NCRFGESTYITMLNVYSKAGFHSAAEELLAKMRQL 333

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
            F    V +  L+  Y   G L+     ++  +Q+    +   YN ++ +Y K G+  +A
Sbjct: 334 GFRRNVVAYSTLIDMYGKVGKLQEATRLFSTMKQQGCKGNLIVYNTMLDMYGKAGRINDA 393

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
                ++ D   +P++ TYT +I     LG+ +  + VF       +K       I++  
Sbjct: 394 ERLMAELKDSKLVPDTVTYTTLINAYNRLGRFEECIRVFEQHRADGLKLDRILVAIMINV 453

Query: 252 FVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREM 302
           +    ++ +   LL  M   G  P  R ++  +E  ++ G  + A E LR++
Sbjct: 454 YGKARQYSKLAELLEVMPKSGIQPDTRILKTVVEIYEDGGMCENAAELLRKI 505



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 104/231 (45%), Gaps = 21/231 (9%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           ML + ++ G     + L+AK+R  G R        +ID YG   K   A + F    T+ 
Sbjct: 310 MLNVYSKAGFHSAAEELLAKMRQLGFRRNVVAYSTLIDMYGKVGKLQEATRLF---STMK 366

Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
               K  L ++Y+++L    K  R  DA  ++ E+  S +VPD  T++ L+  +   G  
Sbjct: 367 QQGCKGNL-IVYNTMLDMYGKAGRINDAERLMAELKDSKLVPDTVTYTTLINAYNRLGRF 425

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNL------MPDAATK---ELLKK- 581
           +   ++F   R +G++ D  +  ++I  Y K    S L      MP +  +    +LK  
Sbjct: 426 EECIRVFEQHRADGLKLDRILVAIMINVYGKARQYSKLAELLEVMPKSGIQPDTRILKTV 485

Query: 582 -SLWKEGRRKEAAAVEERCEKINDVPSLA----LRGHIWAVSSADLTRVHS 627
             ++++G   E AA  E   KIN++  L      + H W     D +++++
Sbjct: 486 VEIYEDGGMCENAA--ELLRKINELGPLEGNTLHKQHRWIRPPPDSSQMNA 534



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 73/367 (19%), Positives = 139/367 (37%), Gaps = 30/367 (8%)

Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
           G+++    T  E R+        +Y+I++ ++ K G++ +A  TFR++   G +P+S  Y
Sbjct: 143 GNIDKGNETLKEMREAGIKPDQVAYSILIDMFGKAGRHEDAAATFRELQMSGYLPDSVAY 202

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
             +I     +G +D A  VF              +  +++ +      D+A  +L  M++
Sbjct: 203 NTLIHAFAKVGMVDQATLVFKEAQRSFCLDDPVIFYTMIQVYAKARMADQALHVLKLMKE 262

Query: 271 DGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNS 330
            G  P            E+G+    N F+R   P   IK            E+  + N  
Sbjct: 263 IGLQP-----------NELGYGSVLNAFMRANQPMGAIKLF----------EEMQESNCR 301

Query: 331 GVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW 390
                Y   L  +       +  +E   ++  L      V  + L+    +  K  E   
Sbjct: 302 FGESTYITMLNVY-SKAGFHSAAEELLAKMRQLGFRRNVVAYSTLIDMYGKVGKLQEATR 360

Query: 391 HFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF 450
            F      Q G   ++     ML +  + G +   +RL+A+L+   +     T   +I+ 
Sbjct: 361 LF--STMKQQGCKGNLIVYNTMLDMYGKAGRINDAERLMAELKDSKLVPDTVTYTTLINA 418

Query: 451 YGISKKADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFS 509
           Y    + +  ++ F   R         KL  +L + ++    K ++      +LE M  S
Sbjct: 419 YNRLGRFEECIRVFEQHRA-----DGLKLDRILVAIMINVYGKARQYSKLAELLEVMPKS 473

Query: 510 GIVPDVQ 516
           GI PD +
Sbjct: 474 GIQPDTR 480



 Score = 43.1 bits (100), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 1/107 (0%)

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           ++I +   P+ + Y ++I+  +N G+  +A   FS + L+        Y IL+  +    
Sbjct: 49  EMIGKNCPPDIKFYALVIKEAINTGRFQTAQHWFSKMKLLGCPPDIVIYNILILEYGKRG 108

Query: 257 RFDEAKSLLNEMRDDGKFPGRAMRVA-LERMQEMGFIQGANEFLREM 302
            F +A    ++++D+G  P      A L   +++G I   NE L+EM
Sbjct: 109 NFSQAMKYFSQLKDEGLLPDSGTYCAVLSACRKVGNIDKGNETLKEM 155



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/121 (21%), Positives = 51/121 (42%)

Query: 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206
           Y   G+    +  +++ +    L  + +Y  V+S   K G   +  ET +++ + G  P+
Sbjct: 104 YGKRGNFSQAMKYFSQLKDEGLLPDSGTYCAVLSACRKVGNIDKGNETLKEMREAGIKPD 163

Query: 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
              Y+++I+     G+ + A   F  L +      S  Y  L+  F  V   D+A  +  
Sbjct: 164 QVAYSILIDMFGKAGRHEDAAATFRELQMSGYLPDSVAYNTLIHAFAKVGMVDQATLVFK 223

Query: 267 E 267
           E
Sbjct: 224 E 224



 Score = 39.7 bits (91), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 19/137 (13%)

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
           C P  KF     Y+ +++      R   A +   +M   G  PD+  ++ L+  +  +G+
Sbjct: 55  CPPDIKF-----YALVIKEAINTGRFQTAQHWFSKMKLLGCPPDIVIYNILILEYGKRGN 109

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSN-------------SNLMPDAATKE 577
                K FS ++  G+ PD+  +  ++ A C+ + N             + + PD     
Sbjct: 110 FSQAMKYFSQLKDEGLLPDSGTYCAVLSA-CRKVGNIDKGNETLKEMREAGIKPDQVAYS 168

Query: 578 LLKKSLWKEGRRKEAAA 594
           +L     K GR ++AAA
Sbjct: 169 ILIDMFGKAGRHEDAAA 185


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 92/445 (20%), Positives = 183/445 (41%), Gaps = 37/445 (8%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  L++ Y    + +       E R+R   L+T +YN++++   ++G   EA    + + 
Sbjct: 247 YSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDME 306

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           D G +P+  TY  +I  L    + + A  +   +    +K     Y  L++GF+     D
Sbjct: 307 DYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNAD 366

Query: 260 EAKSLLNEMRDDGKFPGRAMRVALER-MQEMGFIQGANEFLREMLPDKRIKNVRYYE--- 315
           EA  ++ EM   G  P +     L R + +MG +  A+  L++M+ D    +   Y    
Sbjct: 367 EAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLII 426

Query: 316 DGSDDDEDENDD-------NNSGVR---IAYGVQLKPWL---DPKALANTLDEWSPEVVS 362
           +G      + D         N+G+      Y + +       +P+  ++ L+E + +   
Sbjct: 427 EGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKG-- 484

Query: 363 LLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWV---AYQPGYTHDVYALEKMLTILARH 419
            L    FV+   L+    R     E      C +     +     D+Y    ++  L++ 
Sbjct: 485 -LKPNAFVYAP-LISGYCR-----EGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKV 537

Query: 420 GHVELVDRLIAKLRSDGMRLP--FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKF 477
           G VE   +  A+++  G+ LP  F+   LI   +G  K  D         R L   +   
Sbjct: 538 GRVEESTKYFAQMQERGL-LPNEFTYSGLI---HGYLKNGDLESAEQLVQRMLDTGLKPN 593

Query: 478 KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL 537
              ++Y  LL +  K        +  + M+  G++ D + +  L+++ +  G+ +   ++
Sbjct: 594 D--VIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRV 651

Query: 538 FSMVRQNGVEPDAYMFKVLIQAYCK 562
            S + +NG  PD +++  LI   CK
Sbjct: 652 LSGIEKNGSVPDVHVYSSLISGLCK 676



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 94/460 (20%), Positives = 180/460 (39%), Gaps = 54/460 (11%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y+ ++  Y K  +   A +   ++ + G   N+ TY V+I  L   G ++ A      +
Sbjct: 246 TYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDM 305

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
               +      Y  L+ G     R +EAK+LL+EM      P   +   L        I 
Sbjct: 306 EDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANL--------ID 357

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKAL---A 350
           G   F+RE   D+  K ++              DN     +  G+     +D  +L    
Sbjct: 358 G---FMREGNADEAFKMIKEMVAAGVQPNKITYDN-----LVRGLCKMGQMDRASLLLKQ 409

Query: 351 NTLDEWSPEVVS--LLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYA 408
              D   P+ ++  L+ +  F           RH  S + A+     +    G + +VY 
Sbjct: 410 MVRDSHRPDTITYNLIIEGHF-----------RH-HSKKDAFRLLSEME-NAGISPNVYT 456

Query: 409 LEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR 468
              M+  L + G  E    L+ ++ + G++        +I  Y        A + F D  
Sbjct: 457 YSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIF-DKM 515

Query: 469 TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
           T    ++    +  Y+SL+  L+K  R  ++     +M   G++P+  T+SGL++ +   
Sbjct: 516 T---KVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKN 572

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY------------CKYLSNSNLMPDAATK 576
           GD +  ++L   +   G++P+  ++  L+++Y             K + +  +M D    
Sbjct: 573 GDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIY 632

Query: 577 ELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWA 616
            +L  +L   G  + A  V    EK   VP +    H+++
Sbjct: 633 GILIHNLSSSGNMEAAFRVLSGIEKNGSVPDV----HVYS 668



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/230 (20%), Positives = 96/230 (41%), Gaps = 5/230 (2%)

Query: 86  LSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQ 145
           LS ME    +PN       +H L     +S    +   L+ ++++      +  +  L+ 
Sbjct: 442 LSEMENAGISPNVYTYSIMIHGLC----QSGEPEKASDLLEEMTTKGLKPNAFVYAPLIS 497

Query: 146 WYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP 205
            Y   G++ L    +++  +   L     YN ++   +K G+  E+ + F Q+ + G +P
Sbjct: 498 GYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLP 557

Query: 206 NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL 265
           N  TY+ +I   +  G L+SA ++   +    +K     Y+ L+E +   +  ++  S  
Sbjct: 558 NEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTF 617

Query: 266 NEMRDDG-KFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
             M D G     R   + +  +   G ++ A   L  +  +  + +V  Y
Sbjct: 618 KSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVY 667



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 89/440 (20%), Positives = 167/440 (37%), Gaps = 50/440 (11%)

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           ++++  Y K+G+  +A E    + D G  P+ R    +++ L+    +    +V   +  
Sbjct: 178 DVLVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVG 237

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQG 294
             I      Y  L+E +  V  FD AK +L EMR+ G         V +  +   G ++ 
Sbjct: 238 AGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEE 297

Query: 295 ANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLD 354
           A  F ++M                +D     D    G  I    + +   + KAL + + 
Sbjct: 298 AFGFKKDM----------------EDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMS 341

Query: 355 --EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
             E  P VV        V+   L+   +R   + E        VA   G   +    + +
Sbjct: 342 CAELKPNVV--------VYAN-LIDGFMREGNADEAFKMIKEMVA--AGVQPNKITYDNL 390

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID--FYGISKKADAALKAFHDDRTL 470
           +  L + G ++    L+ ++  D  R    T  LII+  F   SKK    L +  ++  +
Sbjct: 391 VRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGI 450

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
              +  + +M      +  L +      A ++LEEM   G+ P+   ++ L+  +  +G+
Sbjct: 451 SPNVYTYSIM------IHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGN 504

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLI------------QAYCKYLSNSNLMPDAATKEL 578
             +  ++F  + +  V PD Y +  LI              Y   +    L+P+  T   
Sbjct: 505 VSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSG 564

Query: 579 LKKSLWKEGRRKEAAAVEER 598
           L     K G  + A  + +R
Sbjct: 565 LIHGYLKNGDLESAEQLVQR 584



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 21/144 (14%)

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
           +YSSL+  L K      A  +L+EM   G+ P++  ++ L+      GD    + +F+ +
Sbjct: 666 VYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSI 725

Query: 542 RQNGVEPDAYMFKVLIQAYCK--------YLSN----SNLMPDAATKELLKKSLWKEGRR 589
              G+ P+   +  LI   CK        YL N    + + PDA    +L       G  
Sbjct: 726 LAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDL 785

Query: 590 KEAAAVEERCEKINDVPSLALRGH 613
           ++A  + E          + LRGH
Sbjct: 786 EQAMFLIEE---------MFLRGH 800



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/129 (20%), Positives = 56/129 (43%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           + +L+     + D E      +E  ++    +   YN ++    K+G    A   F  ++
Sbjct: 667 YSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSIL 726

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
            +G +PN  TYT +I+    +G + +A  +++ +    I   +  Y +L  G       +
Sbjct: 727 AKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLE 786

Query: 260 EAKSLLNEM 268
           +A  L+ EM
Sbjct: 787 QAMFLIEEM 795



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 37/180 (20%), Positives = 72/180 (40%), Gaps = 6/180 (3%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +++L++ Y  S D+E V ST+     +  +L    Y I++   + +G    A      
Sbjct: 595 VIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSG 654

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G++P+   Y+ +I  L      + A  +   +    +      Y  L++G      
Sbjct: 655 IEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGD 714

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREML-----PDKRIKNV 311
              A+++ N +   G  P      +L +   ++G I  A     EML     PD  + +V
Sbjct: 715 ISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSV 774



 Score = 40.4 bits (93), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 84/238 (35%), Gaps = 56/238 (23%)

Query: 143  LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
            L    S++GDLE  +    E   R    S  S+N ++  + K GK  E ++    ++  G
Sbjct: 775  LTTGCSSAGDLEQAMFLIEEMFLRGHA-SISSFNNLVDGFCKRGKMQETLKLLHVIMGRG 833

Query: 203  AIPNSRTYTVMIEHLVNLGKL---------------DSALEVFSALPLMRIKR------- 240
             +PN+ T   +I  L   GKL               +SA   FS+L +  I +       
Sbjct: 834  LVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPLDV 893

Query: 241  -------------------------------TSKQYLILVEGFVGVERFDEAKSLLNEMR 269
                                               YL +V+      +  EA +LL EM 
Sbjct: 894  VDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMD 953

Query: 270  DDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRI-KNVRYYEDGSDDDEDEN 325
              G  P      + L  +   G+IQ  N  L  ML  K + K+ ++     D+ E  N
Sbjct: 954  KRGICPSENQCLILLTNLHTSGYIQEHNTVLDNMLCHKWLQKDSKFCNSAGDNLESVN 1011


>gi|227463004|gb|ACP39954.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463006|gb|ACP39955.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 547

 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 98/202 (48%), Gaps = 8/202 (3%)

Query: 363 LLADAKFVWTTRLVCKVLRHFKSPET-AWHFFCWVAYQPGYTHDVYALEKMLTILARHGH 421
           LL DA    +  LV +VL+   +    A  FF W   Q G+ ++  +   ++  L +   
Sbjct: 113 LLEDASIKVSPSLVVEVLKRLSNAGVIALSFFTWAEKQKGFKYNTESYNALIEALGKIKQ 172

Query: 422 VELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLML 481
            +L+  L+ +++S  + L   T  LI   +  ++K + A++AF            FKL  
Sbjct: 173 FKLIRSLVNEMKSRKL-LNKDTFALISRRHARARKVEEAIEAFERMEEF-----GFKLET 226

Query: 482 L-YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
             ++ LL TL K +    A  V ++M     VPD+++++ L+  +  + +   + +++  
Sbjct: 227 SDFNRLLDTLCKSRHVEKANKVFDKMKKRRFVPDIKSYTILLEGWGKEHNLLRLDEVYLE 286

Query: 541 VRQNGVEPDAYMFKVLIQAYCK 562
           ++ +G EPD   + +LI AYCK
Sbjct: 287 MKYDGFEPDVVTYGILISAYCK 308



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 55/271 (20%), Positives = 103/271 (38%), Gaps = 39/271 (14%)

Query: 44  DSIRLA--VRSNSSNSLSSLLNDRLL--DPFIVTHALRSAPNADS-ALSIMEALKSNPNF 98
           D+ R+   + ++S +    LL D  +   P +V   L+   NA   ALS     +    F
Sbjct: 94  DAARICTLLSTHSGSHADKLLEDASIKVSPSLVVEVLKRLSNAGVIALSFFTWAEKQKGF 153

Query: 99  SHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV-------------------- 138
            +N  + +AL   L K ++   +++L+ ++ S K LN                       
Sbjct: 154 KYNTESYNALIEALGKIKQFKLIRSLVNEMKSRKLLNKDTFALISRRHARARKVEEAIEA 213

Query: 139 --------------NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK 184
                         +F  L+     S  +E     +++ ++R  +   +SY I++  + K
Sbjct: 214 FERMEEFGFKLETSDFNRLLDTLCKSRHVEKANKVFDKMKKRRFVPDIKSYTILLEGWGK 273

Query: 185 TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQ 244
                   E + ++  +G  P+  TY ++I       K D+A+E+F  +     K T   
Sbjct: 274 EHNLLRLDEVYLEMKYDGFEPDVVTYGILISAYCKAKKYDAAIELFHEMEAKNCKPTPHV 333

Query: 245 YLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           Y  L+ G    +R  EA       +  G  P
Sbjct: 334 YCTLINGLGSEKRLSEALEFFERFKSCGFTP 364



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 16/161 (9%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN ++  Y  + +  +A +   ++    A PNSRTY +++ HL+   + + A   F  +
Sbjct: 368 TYNSLVGAYCWSMRIDDAFQVIDEMRKHSAGPNSRTYDIILHHLIKARRTNEAYFRFQKM 427

Query: 234 P-LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR----VALERMQE 288
                 + T   Y I+V  F   +R D AK + ++M+  G  PG  M      +L    +
Sbjct: 428 SNEPGCEPTVSTYEIIVRMFCNEDRVDLAKQVWDQMKAKGVLPGMHMYSDLITSLCHKNK 487

Query: 289 MGFIQGANEFLREML------PDKRIKNVR--YYEDGSDDD 321
           +G    A ++ +EML      P K   N++    ++G +D+
Sbjct: 488 LG---EACKYFQEMLDAGIRPPAKMFSNLKQALLDEGKNDE 525



 Score = 46.6 bits (109), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 42/202 (20%), Positives = 92/202 (45%), Gaps = 23/202 (11%)

Query: 425 VDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLY 483
           +D +  +++ DG      T  ++I  Y  +KK DAA++ FH+ +   C P        +Y
Sbjct: 280 LDEVYLEMKYDGFEPDVVTYGILISAYCKAKKYDAAIELFHEMEAKNCKPTPH-----VY 334

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM--YHFALQGDEKIVQKLFSMV 541
            +L+  L   KR  +A+   E     G  P+  T++ L+  Y ++++ D+    ++   +
Sbjct: 335 CTLINGLGSEKRLSEALEFFERFKSCGFTPEAPTYNSLVGAYCWSMRIDDAF--QVIDEM 392

Query: 542 RQNGVEPDAYMFKVLI----------QAYCKYLSNSN---LMPDAATKELLKKSLWKEGR 588
           R++   P++  + +++          +AY ++   SN     P  +T E++ +    E R
Sbjct: 393 RKHSAGPNSRTYDIILHHLIKARRTNEAYFRFQKMSNEPGCEPTVSTYEIIVRMFCNEDR 452

Query: 589 RKEAAAVEERCEKINDVPSLAL 610
              A  V ++ +    +P + +
Sbjct: 453 VDLAKQVWDQMKAKGVLPGMHM 474



 Score = 45.8 bits (107), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 75/199 (37%), Gaps = 4/199 (2%)

Query: 77  RSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNV 136
           R    A  A   ME       F    S  + L   L KS+   +   +   +   +F+  
Sbjct: 205 RKVEEAIEAFERMEEF----GFKLETSDFNRLLDTLCKSRHVEKANKVFDKMKKRRFVPD 260

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
             ++  L++ +    +L  +   + E +         +Y I++S Y K  K   A+E F 
Sbjct: 261 IKSYTILLEGWGKEHNLLRLDEVYLEMKYDGFEPDVVTYGILISAYCKAKKYDAAIELFH 320

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           ++  +   P    Y  +I  L +  +L  ALE F           +  Y  LV  +    
Sbjct: 321 EMEAKNCKPTPHVYCTLINGLGSEKRLSEALEFFERFKSCGFTPEAPTYNSLVGAYCWSM 380

Query: 257 RFDEAKSLLNEMRDDGKFP 275
           R D+A  +++EMR     P
Sbjct: 381 RIDDAFQVIDEMRKHSAGP 399


>gi|302784330|ref|XP_002973937.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
 gi|300158269|gb|EFJ24892.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
          Length = 823

 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 97/498 (19%), Positives = 192/498 (38%), Gaps = 43/498 (8%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           A   L  MEA   +PN      T + L    A++    E   L   + S         + 
Sbjct: 338 ASELLVEMEAAGISPNIV----TYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYC 393

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            L+  ++ +   E  L T+ E R+     +  +YNI++ +Y +  K  + ++ F+ + ++
Sbjct: 394 TLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEK 453

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
              P+  T+  +++   N G L     VF  +           + IL+E +      D +
Sbjct: 454 NCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYS 513

Query: 262 KSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDD 320
             +   +   G  P      AL   +   G  Q   +  +EM               ++ 
Sbjct: 514 VDIYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEM---------------AEA 558

Query: 321 DEDENDDNNSGVRIAYG-----VQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL 375
               +D  ++G+  +Y       QL+ ++D       L++ + + +S +    FV     
Sbjct: 559 GLQLSDACHAGLIHSYANSGQFFQLRKYID------ELEKSAKQPLSGILCKTFVLA--- 609

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
            CK        +          Y  G++ D+     M+++ A+ G +E   +L+ ++R  
Sbjct: 610 YCKC-----GMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKA 664

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR 495
            ++    T   ++  YG       A +   + R       K   ++ Y++LL + TK  R
Sbjct: 665 QLKPDGVTYNCLMSMYGREGMYYKAEEVMSEMRR----AGKAPNLITYNTLLYSYTKHGR 720

Query: 496 DFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV 555
             DA  V  +M+ + + PD  TF+ L+  ++  G  K    +   + ++G +P    FK 
Sbjct: 721 MDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYKEALSVIEYMTEHGCQPTQITFKA 780

Query: 556 LIQAYCKYLSNSNLMPDA 573
           L+  Y +  S S   P  
Sbjct: 781 LLDGYNRNASPSRKKPGG 798



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 95/228 (41%), Gaps = 34/228 (14%)

Query: 372 TTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAK 431
            T  +  VL + +    A   F  +     Y+ DVYA   +++IL+R    +    L   
Sbjct: 179 ATASILSVLGNHEQLPAALELFESLKQDESYSLDVYAYTSLISILSRARRFDEGITLFET 238

Query: 432 LRSDGMRLPFSTIRLIIDFYGISKKADA------------ALKAFHDDRTLCGPISKFKL 479
           ++ +G R    T  +++D YG  K+ D+             L+   DD T          
Sbjct: 239 MQREGQRGNAVTYNVMLDLYG--KRGDSWDRIQSLFQEMKDLEISPDDYT---------- 286

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
              Y++++    +     +A+ + +EM  +G  P+  T++ L+  +   G  K   +L  
Sbjct: 287 ---YNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLV 343

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEG 587
            +   G+ P+   +  LI AY +    + L  +AA    LKKSL  +G
Sbjct: 344 EMEAAGISPNIVTYNELIAAYAR----AGLCDEAAA---LKKSLLSKG 384



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 92/216 (42%), Gaps = 25/216 (11%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G + ++    +++   AR G  +    L   L S G+     T   +I  +  +++ + A
Sbjct: 349 GISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKA 408

Query: 461 LKAFHDDR-TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           L+ F + R T C P      ++ Y+ L+    + ++  D + V + M      PD+ T++
Sbjct: 409 LETFTEMRKTNCTPN-----IVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWN 463

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY--CKYLSNS---------- 567
            L+  F   G    V  +F  +++ G  P    F +LI+ Y  C Y+  S          
Sbjct: 464 SLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRT 523

Query: 568 NLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIN 603
            L P   T   L  SL +EGR ++       CEK++
Sbjct: 524 GLQPTVPTFAALMASLAREGRWQQ-------CEKVS 552



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 80/402 (19%), Positives = 155/402 (38%), Gaps = 33/402 (8%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN +++ YA+ G   EA    + ++ +G  P+  TY  +I       + + ALE F+ +
Sbjct: 356 TYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKALETFTEM 415

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFI 292
                      Y IL++ +  +E+ D+   +   M++    P        L+     G +
Sbjct: 416 RKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGML 475

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
              +   REM   KR      Y  G D      +       + Y V +   L    L  T
Sbjct: 476 TEVSNVFREM---KRAG----YMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPT 528

Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
           +  ++  + SL  + ++    ++  ++         A H         G  H  YA    
Sbjct: 529 VPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACH--------AGLIHS-YANSGQ 579

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
              L ++     +D L    +     +   T  L     G+  +A  AL   +D+    G
Sbjct: 580 FFQLRKY-----IDELEKSAKQPLSGILCKTFVLAYCKCGMDNEAQLALNQLYDN----G 630

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
                K   ++++++    K      A+ +LEE+  + + PD  T++ LM  +  +G   
Sbjct: 631 HSPDIK---VFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYY 687

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAA 574
             +++ S +R+ G  P+   +  L+ +Y K+      M DAA
Sbjct: 688 KAEEVMSEMRRAGKAPNLITYNTLLYSYTKH----GRMDDAA 725



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 89/209 (42%), Gaps = 19/209 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G    V     ++  LAR G  +  +++  ++   G++L  +    +I  Y  S +    
Sbjct: 524 GLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQF-FQ 582

Query: 461 LKAFHDD--RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
           L+ + D+  ++   P+S     +L  + +    KC  D +A   L ++  +G  PD++ F
Sbjct: 583 LRKYIDELEKSAKQPLSG----ILCKTFVLAYCKCGMDNEAQLALNQLYDNGHSPDIKVF 638

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK---YLSNSNLM----- 570
           + ++   A +G  +   KL   +R+  ++PD   +  L+  Y +   Y     +M     
Sbjct: 639 NAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYYKAEEVMSEMRR 698

Query: 571 ----PDAATKELLKKSLWKEGRRKEAAAV 595
               P+  T   L  S  K GR  +AA V
Sbjct: 699 AGKAPNLITYNTLLYSYTKHGRMDDAARV 727



 Score = 39.3 bits (90), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 40/195 (20%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL 143
           +AL + E+LK + ++S +     +L ++L++++R  E  TL                   
Sbjct: 195 AALELFESLKQDESYSLDVYAYTSLISILSRARRFDEGITL------------------- 235

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET-FRQVIDEG 202
                          T     QR   ++   YN+++ +Y K G +++ +++ F+++ D  
Sbjct: 236 -------------FETMQREGQRGNAVT---YNVMLDLYGKRGDSWDRIQSLFQEMKDLE 279

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI--KRTSKQYLILVEGFVGVERFDE 260
             P+  TY  MI   +       AL +F  +        R +   L+ V G  G+ +  E
Sbjct: 280 ISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHK--E 337

Query: 261 AKSLLNEMRDDGKFP 275
           A  LL EM   G  P
Sbjct: 338 ASELLVEMEAAGISP 352


>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 80/414 (19%), Positives = 166/414 (40%), Gaps = 45/414 (10%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS-A 232
           SY  +++  AK G   +A++ F ++ + G  P+   Y ++I+     G + +A E++   
Sbjct: 186 SYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERL 245

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM---RVALERMQEM 289
           L    +      Y +++ G     +FDE+  + + M+ + +  G+ +      +  +   
Sbjct: 246 LKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNER--GQDLYTYSTLIHGLCGS 303

Query: 290 GFIQGANEFLREML-----PDKRIKNVR---YYEDGSDDDEDE--NDDNNSGVR--IAYG 337
           G + GA    +EM      PD  + N     Y   G  ++  E        G R  ++Y 
Sbjct: 304 GNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYN 363

Query: 338 VQLKPWLDPKALANTLDEWS--PEVVSLLADAKFVWTTRLVCK------VLRHFKSPETA 389
           + ++   +   +   +  W   PE         +      +CK       L   +  E  
Sbjct: 364 ILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENG 423

Query: 390 WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID 449
                          D +A   M+  L R G ++ V  ++ ++   G +        +I+
Sbjct: 424 RGDL-----------DTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVIN 472

Query: 450 FYGISKKADAALKAFHDDRTLCGPISK--FKLMLLYSSLLRTLTKCKRDFDAINVLEEMI 507
            +  + K + AL+ F +       +SK  F  ++ Y++L+  L+K +R  +A  +++EM+
Sbjct: 473 GFVRASKLEDALRFFGN------MVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEML 526

Query: 508 FSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
             G  P++ T+S LM          +   L+    + G +PD  M  ++I   C
Sbjct: 527 HKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLC 580



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 105/247 (42%), Gaps = 15/247 (6%)

Query: 364 LADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVE 423
           +A A    + + V K+L+  K+P +A   F  V   PGY+H  Y    +L  L     V 
Sbjct: 1   MASAPKSLSPKRVIKLLKSEKNPHSALSIFDSVTRFPGYSHTPYVFHHILKRLFDPKLVA 60

Query: 424 LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLY 483
            V R++  +R+   + P      +I  Y  +   D AL  F     + G     +    Y
Sbjct: 61  HVSRIVELIRTQKCKCPEDVALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIR---SY 117

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           +SLL  L +  +  +A +        G+ P++QT++ L+     +      ++L + + +
Sbjct: 118 NSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWE 177

Query: 544 NGVEPDAYMFKVLIQAYCK--YLSNS----------NLMPDAATKELLKKSLWKEGRRKE 591
            G  PD + +  LI +  K  Y+S++           + PD A   +L    +K+G    
Sbjct: 178 QGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILN 237

Query: 592 AAAVEER 598
           A+ + ER
Sbjct: 238 ASEIWER 244



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 398 YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA 457
           ++ G++ DV++   ++  LA++G++    +L  ++   G+    +   ++ID  G  KK 
Sbjct: 176 WEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILID--GFFKKG 233

Query: 458 DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
           D    +   +R L GP S +  +  Y+ ++  L KC +  ++  +   M  +    D+ T
Sbjct: 234 DILNASEIWERLLKGP-SVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYT 292

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
           +S L++     G+     +++  + +NGV PD  ++  ++  Y
Sbjct: 293 YSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGY 335



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 114/565 (20%), Positives = 197/565 (34%), Gaps = 87/565 (15%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           L P  V   L+S  N  SALSI +++   P +SH     H            H LK L  
Sbjct: 8   LSPKRVIKLLKSEKNPHSALSIFDSVTRFPGYSHTPYVFH------------HILKRLF- 54

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
                K +      + L++        ++ L+                   V+  YAK  
Sbjct: 55  ---DPKLVAHVSRIVELIRTQKCKCPEDVALT-------------------VIKAYAKNS 92

Query: 187 KNFEAVETFRQVIDE-GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
              +A++ F+++ +  G  P  R+Y  ++  L+   K D A   F     M +    + Y
Sbjct: 93  MPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTY 152

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLP 304
            IL++     ++FD+AK LLN M + G  P   +    +  + + G++  A +   EM  
Sbjct: 153 NILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPE 212

Query: 305 DKRIKNVRYYE---DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVV 361
                +V  Y    DG     D  + +    R+  G  + P          +  ++  + 
Sbjct: 213 RGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYP---------NIPSYNVMIN 263

Query: 362 SLLADAKF-----VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTH------------ 404
            L    KF     +W      +  +   +  T  H  C      G T             
Sbjct: 264 GLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSP 323

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           DV     ML    R G +E    L   +  +G R   S   LI   +  + K D A+  +
Sbjct: 324 DVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFE-NAKVDEAISIW 382

Query: 465 H--DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
               ++  C         + Y  L+  L K      A+++LEE        D   +S ++
Sbjct: 383 ELLPEKDCCAD------SMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMI 436

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC---------KYLSN---SNLM 570
                +G    V  +   + ++G +P+ ++   +I  +          ++  N       
Sbjct: 437 NGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCF 496

Query: 571 PDAATKELLKKSLWKEGRRKEAAAV 595
           P   T   L   L K  R  EA A+
Sbjct: 497 PTVVTYNTLINGLSKAERFSEAYAL 521



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 55/139 (39%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           S+ +  L+     +G L   LS   E       L T +Y+ +++   + G+  E      
Sbjct: 394 SMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLD 453

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           Q+   G  PN      +I   V   KL+ AL  F  +       T   Y  L+ G    E
Sbjct: 454 QMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAE 513

Query: 257 RFDEAKSLLNEMRDDGKFP 275
           RF EA +L+ EM   G  P
Sbjct: 514 RFSEAYALVKEMLHKGWKP 532



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 50/102 (49%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN +++  +K  +  EA    ++++ +G  PN  TY++++  L    KLD AL ++   
Sbjct: 501 TYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQA 560

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                K   K + I++ G     + ++A  L +EM+     P
Sbjct: 561 LEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVP 602



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 21/95 (22%), Positives = 51/95 (53%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y+++M+   +  K   A+  + Q +++G  P+ + + ++I  L + GK++ AL+++S +
Sbjct: 536 TYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEM 595

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
              +       +  L+EGF  V  F+ A  + + +
Sbjct: 596 KQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHI 630


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y +L+R L        A+ +L EM  SGI P+V  +S L++ +   G  + V K+F  + 
Sbjct: 132 YGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMS 191

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
             G+EPD  M+  LI + C++            ++   L P+  T  +L  S+ KEG  +
Sbjct: 192 GRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVR 251

Query: 591 EA 592
           EA
Sbjct: 252 EA 253



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 12/125 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++L+R L   +R   A+ +L  M   G+ PDV T+  L+       D     +L + + 
Sbjct: 97  YTTLMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMC 156

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
           ++G+EP+  ++  L+  YCK             +S   + PD      L  SL + G+ K
Sbjct: 157 ESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVK 216

Query: 591 EAAAV 595
           +AA V
Sbjct: 217 KAARV 221



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 98/249 (39%), Gaps = 26/249 (10%)

Query: 43  IDSIRLAVRSNSSNSLSSLLNDRLLDPF-----IVTHALR--SAPNADSALSIMEALKSN 95
           + S+R AV  N+   L++L     LD       +++H  R  S PNA S  ++M AL ++
Sbjct: 50  LPSVRDAVSYNTV--LAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCAD 107

Query: 96  PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN------------- 142
              +     L ++     +        TLI  +  +  ++ +V  +N             
Sbjct: 108 RRAAQAVGLLRSMQDCGVRPDVV-TYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVV 166

Query: 143 ---LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
              L+  Y  +G  E V   + E   R        Y  ++    + GK  +A      + 
Sbjct: 167 YSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMT 226

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           + G  PN  TY V+I  +   G +  AL++   +    ++     Y  L+ G   V   D
Sbjct: 227 ERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMD 286

Query: 260 EAKSLLNEM 268
           EA +LL EM
Sbjct: 287 EAMALLEEM 295



 Score = 47.0 bits (110), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 4/143 (2%)

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            E R R  L++   +N V+    K G   +A++    + + G   N   + ++I  L+ +
Sbjct: 298 GETRVRPDLMT---FNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRV 354

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR 280
            K+  A+E+   +    ++  S  Y IL+ GF  + + + A+S L+EMR  G  P     
Sbjct: 355 HKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHY 414

Query: 281 VA-LERMQEMGFIQGANEFLREM 302
           +  L+ M + G +  A +   EM
Sbjct: 415 IPLLKAMCDQGMMGQARDLFNEM 437



 Score = 44.3 bits (103), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 100/258 (38%), Gaps = 12/258 (4%)

Query: 27  APFTNKLALYLRR------AQLIDSIRLAVRSNSSNSLSSLLNDRLLDPF-IVTHALRSA 79
           AP+   LA+ LRR      A+L   +RL     S   LS+L + R    +  V  AL   
Sbjct: 13  APY---LAVLLRRGRGEAAARLNRHLRLLPLPESPALLSALPSVRDAVSYNTVLAALCRQ 69

Query: 80  PNADSALSIMEALKSNPNFSH--NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVS 137
              D+AL ++  +   P  +   N  +   L   L   +R  +   L+  +         
Sbjct: 70  GCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAVGLLRSMQDCGVRPDV 129

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L++    + D++  +   NE  +     +   Y+ ++  Y KTG+     + F +
Sbjct: 130 VTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEE 189

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G  P+   YT +I+ L   GK+  A  V   +    ++     Y +L+        
Sbjct: 190 MSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGS 249

Query: 258 FDEAKSLLNEMRDDGKFP 275
             EA  L   M + G  P
Sbjct: 250 VREALDLRKNMSEKGVQP 267



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 39/78 (50%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS+++    K      A   L++MI  G++PD  T+S  +  FA  GD    +++   + 
Sbjct: 448 YSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMT 507

Query: 543 QNGVEPDAYMFKVLIQAY 560
            +G  PD  +F  LIQ Y
Sbjct: 508 ASGFVPDVAVFDSLIQGY 525



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 53/280 (18%), Positives = 115/280 (41%), Gaps = 8/280 (2%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSH- 100
           LIDS+    +   +  +  ++ +R L+P +VT+ +          S+ EAL    N S  
Sbjct: 205 LIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEG-SVREALDLRKNMSEK 263

Query: 101 ----NQSTLHALATVLAKSQRNHELKTLIGDI--SSSKFLNVSVNFMNLMQWYSTSGDLE 154
               +  T + L T L+      E   L+ ++    ++     + F +++      G + 
Sbjct: 264 GVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMR 323

Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
             L       +     +  ++N+++    +  K  +A+E   ++   G  P+S TY+++I
Sbjct: 324 QALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILI 383

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
                + +++ A    S +    ++     Y+ L++         +A+ L NEM  + K 
Sbjct: 384 NGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMDRNCKL 443

Query: 275 PGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
              A    +    + G  + A EFL++M+ +  I +   Y
Sbjct: 444 DAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVTY 483



 Score = 39.7 bits (91), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 1/96 (1%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V+++ L++     G +      +NE  +  KL    +Y+ ++    K+G+   A E  + 
Sbjct: 412 VHYIPLLKAMCDQGMMGQARDLFNEMDRNCKL-DAAAYSTMIHGAFKSGEKKIAEEFLKD 470

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +IDEG IP++ TY++ I      G L +A  V   +
Sbjct: 471 MIDEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQM 506



 Score = 39.3 bits (90), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 15/123 (12%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           LL   LLR + K K+   A+ +++EM  SG+ PD  T+S L+  F      +  +   S 
Sbjct: 346 LLIGGLLR-VHKVKK---AMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSE 401

Query: 541 VRQNGVEPDAYMFKVLIQAYC--------KYLSNS---NLMPDAATKELLKKSLWKEGRR 589
           +R  G+EP+   +  L++A C        + L N    N   DAA    +    +K G +
Sbjct: 402 MRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMDRNCKLDAAAYSTMIHGAFKSGEK 461

Query: 590 KEA 592
           K A
Sbjct: 462 KIA 464


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 111/246 (45%), Gaps = 11/246 (4%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           L+D + + + ++ A +  +A+S+M         + +  T   L     K++   E   L 
Sbjct: 310 LMDGYFLVYEVKKAQHVFNAMSLM-------GVTPDVHTYTILINGFCKNKMVDEALNLF 362

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
            ++     +   V + +L+     SG +  V    +E   R +  +  +Y+ ++    K 
Sbjct: 363 KEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKN 422

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
           G    A+  F ++ D+G  PN+ T+T++++ L   G+L  A EVF  L           Y
Sbjct: 423 GHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTY 482

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGKFPG----RAMRVALERMQEMGFIQGANEFLRE 301
            ++++G       +EA ++L++M D+G  P       + +AL +  E G   G ++ + E
Sbjct: 483 NVMIDGHCKQGLLEEALTMLSKMEDNGCIPDAVTFEIIIIALFKKDENGGNVGFDKKVWE 542

Query: 302 MLPDKR 307
           ++  K+
Sbjct: 543 IVEHKK 548



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 8/164 (4%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD-- 458
           GY  D   L  ++  L   G V+       KL + G +L   +   +I+  G+ K  D  
Sbjct: 124 GYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLIN--GVCKIGDTR 181

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
           AA+K     + + G ++K  + ++YS+++  L K +   +A  +  EM   GI  DV T+
Sbjct: 182 AAIKLL---QKIDGRLTKPNV-VMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTY 237

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           S L+Y F ++G  K    L + +    + P+ Y + +L+ A CK
Sbjct: 238 STLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCK 281



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 62/139 (44%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+  +   G L+  +   NE   +    +  +YNI++    K GK  EA      
Sbjct: 235 VTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAV 294

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++     P+  TY+ +++    + ++  A  VF+A+ LM +      Y IL+ GF   + 
Sbjct: 295 MLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKM 354

Query: 258 FDEAKSLLNEMRDDGKFPG 276
            DEA +L  EM      PG
Sbjct: 355 VDEALNLFKEMHQKNMVPG 373



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 12/118 (10%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+  L K  +  +A +VL  M+ + + PDV T+S LM  + L  + K  Q +F+ + 
Sbjct: 272 YNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMS 331

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGR 588
             GV PD + + +LI  +CK             +   N++P   T   L   L K GR
Sbjct: 332 LMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGR 389



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 102/498 (20%), Positives = 182/498 (36%), Gaps = 65/498 (13%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  +   G +    S   +  +R     T + N ++      G+  +A+    +++ +G
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 159

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
              N  +Y  +I  +  +G   +A+++   +     K     Y  +++     +   EA 
Sbjct: 160 FQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAY 219

Query: 263 SLLNEMRDDGKFPGRAMRVALERMQEMGF-IQG----ANEFLREMLPDKRIKNVRYYEDG 317
            L +EM       G +  V        GF I+G    A   L EM+      NV  Y   
Sbjct: 220 GLFSEM----TVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNIL 275

Query: 318 SDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVC 377
            D    E     +   +A  V LK  + P  +            S L D  F     LV 
Sbjct: 276 VDALCKEGKVKEAKSVLA--VMLKACVKPDVIT----------YSTLMDGYF-----LVY 318

Query: 378 KVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM 437
           +V       + A H F  ++   G T DV+    ++    ++  V+    L  ++    M
Sbjct: 319 EV-------KKAQHVFNAMSLM-GVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNM 370

Query: 438 RLPFSTIRLIIDFYGISKKADAA-----LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK 492
                T   +ID  G+ K          +   HD       I+       YSSL+  L K
Sbjct: 371 VPGIVTYSSLID--GLCKSGRIPYVWDLIDEMHDRGQPANVIT-------YSSLIDGLCK 421

Query: 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYM 552
                 AI +  +M   GI P+  TF+ L+      G  K  Q++F  +   G   + Y 
Sbjct: 422 NGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYT 481

Query: 553 FKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERC- 599
           + V+I  +CK             + ++  +PDA T E++  +L+K+         +++  
Sbjct: 482 YNVMIDGHCKQGLLEEALTMLSKMEDNGCIPDAVTFEIIIIALFKKDENGGNVGFDKKVW 541

Query: 600 ----EKINDVPSLALRGH 613
                K  + PS+  + H
Sbjct: 542 EIVEHKKGETPSITFKCH 559



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 93/467 (19%), Positives = 176/467 (37%), Gaps = 39/467 (8%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           +V    L++     G ++  L   ++   +   L+  SY  +++   K G    A++  +
Sbjct: 129 TVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQ 188

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           ++      PN   Y+ +I+ L     +  A  +FS + +  I      Y  L+ GF    
Sbjct: 189 KIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEG 248

Query: 257 RFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
           +  EA  LLNEM      P      + ++ + + G ++ A   L  ML      +V  Y 
Sbjct: 249 KLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYS 308

Query: 316 DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL 375
              D           G  + Y V+    +     A +L   +P+V +           ++
Sbjct: 309 TLMD-----------GYFLVYEVKKAQHV---FNAMSLMGVTPDVHTYTILINGFCKNKM 354

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           V + L  FK             +Q      +     ++  L + G +  V  LI ++   
Sbjct: 355 VDEALNLFKE-----------MHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDR 403

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR 495
           G      T   +ID    +   D A+  F+  +      + F     ++ LL  L K  R
Sbjct: 404 GQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFT----FTILLDGLCKGGR 459

Query: 496 DFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV 555
             DA  V ++++  G   +V T++ ++     QG  +    + S +  NG  PDA  F++
Sbjct: 460 LKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIPDAVTFEI 519

Query: 556 LIQAYCKYLSNSNLMPDAATKELLKKSLWK--EGRRKEAAAVEERCE 600
           +I A  K   N   +          K +W+  E ++ E  ++  +C 
Sbjct: 520 IIIALFKKDENGGNVG-------FDKKVWEIVEHKKGETPSITFKCH 559



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 8/164 (4%)

Query: 401  GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD-- 458
            GY  D      ++  L   G V        KL + G +L   +   +I+  G+ K  D  
Sbjct: 991  GYHPDTITFTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLIN--GVCKIGDTR 1048

Query: 459  AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
            AA+K     R + G ++K  + ++Y++++  L K +    A  +  EM   GI  DV T+
Sbjct: 1049 AAIKLL---RKIDGRLTKPDV-VMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTY 1104

Query: 519  SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            + L+Y F + G  K    L + +    + P+   + +L+ A CK
Sbjct: 1105 NTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCK 1148



 Score = 47.0 bits (110), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 44/221 (19%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
           NPN      T + L   L K  +  E K+++  +  +      + +  LM  Y    +++
Sbjct: 266 NPNVY----TYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVK 321

Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
                +N            +Y I+++ + K     EA+  F+++  +  +P   TY+ +I
Sbjct: 322 KAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLI 381

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
           + L   G++    ++   +           Y  L++G       D A +L N+M+D G  
Sbjct: 382 DGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIR 441

Query: 275 PGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
           P      + L+ + + G ++ A E  +++L      NV  Y
Sbjct: 442 PNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTY 482



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 2/97 (2%)

Query: 174  SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK--LDSALEVFS 231
            +YN ++  +   GK  EA+    +++ +   PN RTY ++++ L   GK  LD +L + S
Sbjct: 1103 TYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLS 1162

Query: 232  ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
             +     K  +  + I++      +  D+ + LL+EM
Sbjct: 1163 KMEDNGCKANAVTFEIIISALFEKDENDKVEKLLHEM 1199



 Score = 39.3 bits (90), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 2/137 (1%)

Query: 138  VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
            V++  L+      GD    +    +   R        YN ++    K     +A   F +
Sbjct: 1032 VSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFE 1091

Query: 198  VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV--GV 255
            +  +G   +  TY  +I     +GKL  A+ + + + L  I    + Y ILV+     G 
Sbjct: 1092 MNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGK 1151

Query: 256  ERFDEAKSLLNEMRDDG 272
            +  DE+ S+L++M D+G
Sbjct: 1152 DLLDESLSMLSKMEDNG 1168


>gi|302780731|ref|XP_002972140.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
 gi|300160439|gb|EFJ27057.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
          Length = 482

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 161/408 (39%), Gaps = 72/408 (17%)

Query: 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217
           S + E +    L++T SYNI+++ + KT +  EA++ F ++   G  P++ TY  +I  L
Sbjct: 87  SWFQELKDFRGLVNTVSYNILINAFCKTKRIDEAIQLFGEMKAPGCAPSTSTYNTLIGGL 146

Query: 218 VNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR 277
             + +L  A + +  L       +   Y ILV+GF   +R  EA  LLNE+   G     
Sbjct: 147 CRVERLGEAQQFYERLLSSGAGASFITYNILVDGFCKADRVPEAVELLNELVARGGVVTS 206

Query: 278 A-MRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAY 336
           A     ++ + + G I  A  F   M  D                         GVR   
Sbjct: 207 APYNCIIDTLFKKGKIHEAELFFNRMEKD-------------------------GVR--- 238

Query: 337 GVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWV 396
                    P+ +  T          +L D         +CK  R  ++ E    FF ++
Sbjct: 239 ---------PQEVTFT----------VLIDG--------LCKANRVARAKEI---FFSYL 268

Query: 397 AYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK 456
             + G +  V     ++    ++G V+   R+   + + G      +  ++I+    +K+
Sbjct: 269 --ESGGSPSVVICSCLMDGFCKYGGVDEAWRIFELMTNRGCTPNDVSCNILINGLCKAKR 326

Query: 457 ADAALKAFHDDRTLCGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP 513
              A + F +       + K +    ++ YS+ +  L +  R   A  VL  ++  G  P
Sbjct: 327 LSQAREVFEE-------VVKRQAKPDVVTYSTFMDGLCRAHRVDQARQVLCMLVDKGGTP 379

Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSM-VRQNGVEPDAYMFKVLIQAY 560
           DV  ++ L+      G     +K+F + +R  G  P+ +   VL+  +
Sbjct: 380 DVVMYTALISGLCSLGRLDEARKVFEVDMRAAGCAPNNFTCNVLVNGF 427



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 86/205 (41%), Gaps = 1/205 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+ +A       D A+ +   +K+ P  + + ST + L   L + +R  E +     + S
Sbjct: 106 ILINAFCKTKRIDEAIQLFGEMKA-PGCAPSTSTYNTLIGGLCRVERLGEAQQFYERLLS 164

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           S      + +  L+  +  +  +   +   NE   R  ++++  YN ++    K GK  E
Sbjct: 165 SGAGASFITYNILVDGFCKADRVPEAVELLNELVARGGVVTSAPYNCIIDTLFKKGKIHE 224

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A   F ++  +G  P   T+TV+I+ L    ++  A E+F +        +      L++
Sbjct: 225 AELFFNRMEKDGVRPQEVTFTVLIDGLCKANRVARAKEIFFSYLESGGSPSVVICSCLMD 284

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP 275
           GF      DEA  +   M + G  P
Sbjct: 285 GFCKYGGVDEAWRIFELMTNRGCTP 309



 Score = 46.2 bits (108), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 5/105 (4%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y+  M    +  +  +A +    ++D+G  P+   YT +I  L +LG+LD A +VF   
Sbjct: 348 TYSTFMDGLCRAHRVDQARQVLCMLVDKGGTPDVVMYTALISGLCSLGRLDEARKVFEV- 406

Query: 234 PLMRIKRTSKQYL---ILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             MR    +       +LV GF    R DEA+ L     + G  P
Sbjct: 407 -DMRAAGCAPNNFTCNVLVNGFGLAGRLDEARELFQRFVERGVQP 450


>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 113/539 (20%), Positives = 206/539 (38%), Gaps = 81/539 (15%)

Query: 73  THALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSK 132
           T  L SA   + A S++  +     F  + ST   +   L  + +      L  ++    
Sbjct: 455 TRCLCSAGKYEKAFSVIREMIGQ-GFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGG 513

Query: 133 FLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV 192
            +     +  ++  +  +G +E     +NE R+     +  +Y  ++  Y K  K   A 
Sbjct: 514 LVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYAN 573

Query: 193 ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR----IKRTSKQ---- 244
           E F  ++ EG +PN  TY+ +I+     G+++ A ++F  +   +    +    KQ    
Sbjct: 574 ELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDD 633

Query: 245 ---------YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQG 294
                    Y  L++GF  + R +EA+ LL+ M  +G  P + +  AL + + ++G +  
Sbjct: 634 NSERPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDE 693

Query: 295 ANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLD 354
           A E   EM        +  Y    D                Y    +  L  K L+  L+
Sbjct: 694 AQEVKAEMSEHGFPATLYTYSSLID---------------RYFKVKRQDLASKVLSKMLE 738

Query: 355 -EWSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEK 411
              +P VV        ++T  +  +CKV +     + A+     +  + G   +V     
Sbjct: 739 NSCAPNVV--------IYTEMIDGLCKVGK----TDEAYKLM-QMMEEKGCQPNVVTYTA 785

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY-------------------- 451
           M+    R G +E    L+ ++ S G+   + T R++ID                      
Sbjct: 786 MIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTH 845

Query: 452 ------GISKKADAALKAFHDDRTLCGPISK---FKLMLLYSSLLRTLTKCKRDFDAINV 502
                 G  K  +   K F +   L   I +      + LY  L+  L K +R   A+ +
Sbjct: 846 WPTHAAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSLYRLLVDNLIKAQRLEMALRL 905

Query: 503 LEEM-IFSGIVPDV-QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
           LEE+  FS  + D   T++ L+    L        +LFS + + GV P+   F  LI+ 
Sbjct: 906 LEEVATFSATLVDYSSTYNSLIESLCLANKVDKAFRLFSEMSKKGVIPEMQTFCSLIKG 964



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 81/427 (18%), Positives = 158/427 (37%), Gaps = 50/427 (11%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           +N  +  +   ++G  E   S   E   +  +  T +Y+ V+       K   A   F +
Sbjct: 449 INVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEE 508

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G + +  TYT+M++     G ++ A + F+ +  +        Y  L+  ++  ++
Sbjct: 509 MKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKK 568

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
              A  L   M  +G  P      AL +   + G ++ A +    M   K + +V  Y  
Sbjct: 569 VSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFK 628

Query: 317 GSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLV 376
             DDD  E  +      + YG  L  +                                 
Sbjct: 629 QYDDDNSERPN-----VVIYGALLDGF--------------------------------- 650

Query: 377 CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
           CK+ R     E A      ++ + G   +    + ++  L + G ++    + A++   G
Sbjct: 651 CKLHR----VEEARKLLDAMSME-GCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHG 705

Query: 437 MRLPFSTIRLIIDFYGISKKADAALKAFHDD-RTLCGPISKFKLMLLYSSLLRTLTKCKR 495
                 T   +ID Y   K+ D A K         C P      +++Y+ ++  L K  +
Sbjct: 706 FPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPN-----VVIYTEMIDGLCKVGK 760

Query: 496 DFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV 555
             +A  +++ M   G  P+V T++ ++  F   G  +   +L   +   GV P+   ++V
Sbjct: 761 TDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRV 820

Query: 556 LIQAYCK 562
           LI   CK
Sbjct: 821 LIDHCCK 827



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 86/448 (19%), Positives = 169/448 (37%), Gaps = 52/448 (11%)

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
           LEL    ++E      +L+  + +         GK  +A    R++I +G IP++ TY+ 
Sbjct: 429 LELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSK 488

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           ++ +L N  K++ A  +F  +    +      Y I+V+ F      ++A+   NEMR+ G
Sbjct: 489 VLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVG 548

Query: 273 KFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYED--------------- 316
             P      AL     +   +  ANE    ML +  + N+  Y                 
Sbjct: 549 CTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKAC 608

Query: 317 -------GSDDDED------ENDDNNSGVR--IAYGVQLKPWL------DPKALANTLDE 355
                  GS D  D      + DD+NS     + YG  L  +       + + L + +  
Sbjct: 609 QIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEEARKLLDAMSM 668

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
              E   ++ DA        +CKV +  ++ E           + G+   +Y    ++  
Sbjct: 669 EGCEPNQIVYDA----LIDGLCKVGKLDEAQEVKAEM-----SEHGFPATLYTYSSLIDR 719

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH-DDRTLCGPI 474
             +    +L  ++++K+  +           +ID      K D A K     +   C P 
Sbjct: 720 YFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPN 779

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
                ++ Y++++    +  +    + +LE M   G+ P+  T+  L+ H    G   + 
Sbjct: 780 -----VVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVA 834

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
             L   ++Q      A  ++ +I+ + K
Sbjct: 835 HNLLEEMKQTHWPTHAAGYRKVIEGFNK 862



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 85/204 (41%), Gaps = 7/204 (3%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           LLD F   H +  A     A+S ME  + N      Q    AL   L K  +  E + + 
Sbjct: 646 LLDGFCKLHRVEEARKLLDAMS-MEGCEPN------QIVYDALIDGLCKVGKLDEAQEVK 698

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
            ++S   F      + +L+  Y      +L     ++  + +   +   Y  ++    K 
Sbjct: 699 AEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKV 758

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
           GK  EA +  + + ++G  PN  TYT MI+    +GK+++ LE+   +    +      Y
Sbjct: 759 GKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTY 818

Query: 246 LILVEGFVGVERFDEAKSLLNEMR 269
            +L++        D A +LL EM+
Sbjct: 819 RVLIDHCCKNGALDVAHNLLEEMK 842



 Score = 46.2 bits (108), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 12/138 (8%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS +L  L    +   A  + EEM   G+V DV T++ ++  F   G  +  +K F+ +R
Sbjct: 486 YSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMR 545

Query: 543 QNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRK 590
           + G  P+   +  LI AY K             + +   +P+  T   L     K G+ +
Sbjct: 546 EVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQME 605

Query: 591 EAAAVEERCEKINDVPSL 608
           +A  + ER     DVP +
Sbjct: 606 KACQIFERMCGSKDVPDV 623



 Score = 43.1 bits (100), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 87/226 (38%), Gaps = 35/226 (15%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G+  D     K+L  L     +EL   L  +++  G+     T  +++D +  +   + A
Sbjct: 478 GFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQA 537

Query: 461 LKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
            K F++ R + C P      ++ Y++L+    K K+   A  + E M+  G +P++ T+S
Sbjct: 538 RKWFNEMREVGCTPN-----VVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYS 592

Query: 520 GLMYHFALQGD-EKIVQKLFSMVRQ----------------NGVEPDAYMFKVLIQAYCK 562
            L+      G  EK  Q    M                   N   P+  ++  L+  +CK
Sbjct: 593 ALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCK 652

Query: 563 Y------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVE 596
                        +S     P+    + L   L K G+  EA  V+
Sbjct: 653 LHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 698


>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 585

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           +S+L+ TL K     +A   LE M+  GIVPD+ TF+ L+  F L GD    ++LF  + 
Sbjct: 275 FSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMP 334

Query: 543 QNGVEPDAYMFKVLIQAYCKYLSNSNLM------------PDAATKELLKKSLWKEGRRK 590
             G EPD   + VLI  YCK  +    M            PD  T  +L K L+  G+  
Sbjct: 335 SKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVG 394

Query: 591 EA 592
           +A
Sbjct: 395 DA 396



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 117/297 (39%), Gaps = 34/297 (11%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +++ ++    K G   EA +    ++  G +P+  T+T +IE    +G LDSA E+F ++
Sbjct: 274 TFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSM 333

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFI 292
           P    +     Y +L+ G+      +EA  L NEM   GK+P  +   V L+ +   G +
Sbjct: 334 PSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKV 393

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
             A +    + P    KN+ Y      D   +N                   +   L N 
Sbjct: 394 GDAKKLFGVVKPHAVPKNL-YICSVFLDGLCKNG---------------CLFEAMELFNE 437

Query: 353 LDEWSP----EVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYA 408
           L  ++     E  + L D         +CK     +  ETAW  F  ++ Q G   DV  
Sbjct: 438 LKSYNMKLDIESFNCLIDG--------LCKA----RKLETAWELFEKLS-QEGLQPDVVT 484

Query: 409 LEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465
              M+    ++G V+  + L   +  +G      T   ++  +  + K +  +K  H
Sbjct: 485 YCIMINGFCKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYKNNKLEEVVKLLH 541



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 53/119 (44%)

Query: 150 SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRT 209
           +G L   +  +NE +     L  ES+N ++    K  K   A E F ++  EG  P+  T
Sbjct: 425 NGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVT 484

Query: 210 YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           Y +MI      G++D+A  +F  +           Y  L+ GF    + +E   LL++M
Sbjct: 485 YCIMINGFCKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYKNNKLEEVVKLLHKM 543



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 66/163 (40%), Gaps = 2/163 (1%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           GY  DV     ++  L     +    RL  +++  G      T   +I     +   + A
Sbjct: 156 GYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRTGNINLA 215

Query: 461 LKAFHDDRTLCGP--ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
           LK   +      P  I+    +  Y+ ++  L K  +  +A  +  EM+  G+ PDV TF
Sbjct: 216 LKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTF 275

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           S L+     +G     +K    +   G+ PD + F  LI+ +C
Sbjct: 276 SALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFC 318



 Score = 42.4 bits (98), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 76/164 (46%), Gaps = 12/164 (7%)

Query: 123 TLIGDISSSKFLNVS----------VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
            L+GD+ S+K L +S          +++  L+  Y  + ++E  +  +NE  +  K    
Sbjct: 318 CLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDM 377

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFS 231
           +++ +++      GK  +A + F  V+   A+P N    +V ++ L   G L  A+E+F+
Sbjct: 378 KTFCVLLKGLFLAGKVGDAKKLF-GVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFN 436

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            L    +K   + +  L++G     + + A  L  ++  +G  P
Sbjct: 437 ELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQP 480



 Score = 42.4 bits (98), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 6/163 (3%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   DV     ++  L + G V    + +  +   G+     T   +I+ + +    D+A
Sbjct: 267 GVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSA 326

Query: 461 LKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
            + F     L  P   ++  ++ Y+ L+    K     +A+ +  EM+  G  PD++TF 
Sbjct: 327 KELF-----LSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFC 381

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            L+    L G     +KLF +V+ + V  + Y+  V +   CK
Sbjct: 382 VLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCK 424


>gi|218196531|gb|EEC78958.1| hypothetical protein OsI_19424 [Oryza sativa Indica Group]
          Length = 975

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 104/230 (45%), Gaps = 8/230 (3%)

Query: 77  RSAPNADSALSIMEALKSN--PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFL 134
           R  P A  AL ++  +++N  P +  N + +      L  S R  E    +  +    FL
Sbjct: 523 RKYPKA--ALDLLREMQTNGHPPWIKNCTEM---VQQLCFSGRVTEAVQFLDGMLQIGFL 577

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
              V +   M     +G+++  L  + +   +  L    ++NI+++ + K+ K  EA + 
Sbjct: 578 PDIVTYSAAMNGMCNTGEVDDALHLFRDISCKYYLPDVVAHNILINGFRKSSKLDEAQKI 637

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
             +++++G  P+  TY +MI+     G+++ A+     +     + T   Y  L++GF  
Sbjct: 638 MEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMVYEEKQPTVITYTSLIDGFCS 697

Query: 255 VERFDEAKSLLNEMRDDGKFPGRAMRVA-LERMQEMGFIQGANEFLREML 303
             R DEA  L  EMR+ G  P      A +  +++ G I+ A  +  EM+
Sbjct: 698 AGRPDEAIKLWCEMREKGCAPNNIAYTAFINGLRKCGRIETALTYFEEMV 747



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 80/190 (42%), Gaps = 13/190 (6%)

Query: 379 VLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR 438
           VL    S   A  FF W A QPG+ H  Y+L  M ++L RH    L DRL A   S    
Sbjct: 77  VLLRLPSWRHALDFFRWAADQPGFRHSCYSLNAMASLLPRHQRAHL-DRLAADAISARCL 135

Query: 439 LPFSTIRLIIDFYGISKKADAALKAFHDDRTL--CGPISKFKLMLLYSSLLRTLTKCKRD 496
           +    +  ++   G +   D A++AF   R    C P S       Y+ LL  L K  R 
Sbjct: 136 MTPGALGFLLRCLGAAGLPDTAVRAFDAARASFGCTPNS-----YTYNCLLDALAKAGRA 190

Query: 497 FDAINVLEEMIF---SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
            DA   L EM+     G V D  T + L+  +   G       +F  + + G   D ++ 
Sbjct: 191 DDAQARLREMVARCGDGSV-DKYTLTSLLRCYCNAGRPDDANDVFQRMSELGW-VDEHVL 248

Query: 554 KVLIQAYCKY 563
             L+ A+ K+
Sbjct: 249 TTLMVAFSKW 258



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 117/563 (20%), Positives = 200/563 (35%), Gaps = 107/563 (19%)

Query: 60  SLLNDRLLDPFIVTHALR------------SAPNADS----------ALSIMEALKSNPN 97
           S L   LLD F    A R            +AP A+S          AL         P 
Sbjct: 40  SYLAHHLLDEFSRPRATRDAARLRRLAAELTAPAAESVLLRLPSWRHALDFFRWAADQPG 99

Query: 98  FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVL 157
           F H+  +L+A+A++L + QR H L  L  D  S++ L        L++    +G  +  +
Sbjct: 100 FRHSCYSLNAMASLLPRHQRAH-LDRLAADAISARCLMTPGALGFLLRCLGAAGLPDTAV 158

Query: 158 STWNEYRQRAKLL-STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV---- 212
             ++  R       ++ +YN ++   AK G+  +A    R+++      +   YT+    
Sbjct: 159 RAFDAARASFGCTPNSYTYNCLLDALAKAGRADDAQARLREMVARCGDGSVDKYTLTSLL 218

Query: 213 ------------------------MIEHLVNL--------GKLDSALEVFSALPLMRIKR 240
                                   + EH++          GK+D A+E+  ++  + ++ 
Sbjct: 219 RCYCNAGRPDDANDVFQRMSELGWVDEHVLTTLMVAFSKWGKVDGAVELLGSMEALGMRL 278

Query: 241 TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFL 299
           + K   +LV GF    R D+A  +  +M   G     AM  V +E + +   I  A +  
Sbjct: 279 SEKTLSVLVHGFTKQGRVDKAMDMFAKMVSYGFVVDLAMYSVLIEGLCQQKDIARAVKLF 338

Query: 300 REMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPE 359
           +EM       +VR  +   +    E D         + V + P+++  A           
Sbjct: 339 KEMKSSGVAPDVRLLKKVIEAFCREGD---------FAV-IGPFINENA----------- 377

Query: 360 VVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFF-CWVAYQPGYTHDVYALEKMLTILAR 418
               L     V    +V + L H    E A+      V       +DV     ML I   
Sbjct: 378 --EYLKSGSVVPLYNVVLEELVHCGEVEAAYQLLRSMVCGGQAVNNDVAGGAHMLHI--- 432

Query: 419 HGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFK 478
                   R  AK  SD       +  +++      KK D AL A   D    G   K  
Sbjct: 433 --------REDAKPNSD-------SFNIVVCGLCKVKKLDMAL-ALTKDMISLGCKGK-- 474

Query: 479 LMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF 538
            +L+++ L+  L    R  +   +  +M   G+ P   T++ L Y    +   K    L 
Sbjct: 475 -ILMFNDLIHELCNMDRLEEGYGIFNQMKDLGLTPSEFTYNSLFYGICRRKYPKAALDLL 533

Query: 539 SMVRQNGVEPDAYMFKVLIQAYC 561
             ++ NG  P       ++Q  C
Sbjct: 534 REMQTNGHPPWIKNCTEMVQQLC 556



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 1/131 (0%)

Query: 185 TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQ 244
           +G+  EAV+    ++  G +P+  TY+  +  + N G++D AL +F  +           
Sbjct: 558 SGRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKYYLPDVVA 617

Query: 245 YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREML 303
           + IL+ GF    + DEA+ ++ EM + G FP      + ++   + G I+ A  +L +M+
Sbjct: 618 HNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMV 677

Query: 304 PDKRIKNVRYY 314
            +++   V  Y
Sbjct: 678 YEEKQPTVITY 688



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 118/302 (39%), Gaps = 39/302 (12%)

Query: 31  NKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNA---DSALS 87
           N +A  L R Q     RLA  + S+  L        + P  +   LR    A   D+A+ 
Sbjct: 108 NAMASLLPRHQRAHLDRLAADAISARCL--------MTPGALGFLLRCLGAAGLPDTAVR 159

Query: 88  IMEALKSNPNFSHNQSTLHALATVLAKSQRN-------HELKTLIGDISSSKFLNVSVNF 140
             +A +++   + N  T + L   LAK+ R         E+    GD S  K+       
Sbjct: 160 AFDAARASFGCTPNSYTYNCLLDALAKAGRADDAQARLREMVARCGDGSVDKY-----TL 214

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI---VMSVYAKTGKNFEAVETFRQ 197
            +L++ Y  +G  +      N+  QR   L     ++   +M  ++K GK   AVE    
Sbjct: 215 TSLLRCYCNAGRPD----DANDVFQRMSELGWVDEHVLTTLMVAFSKWGKVDGAVELLGS 270

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G   + +T +V++      G++D A+++F+ +           Y +L+EG    + 
Sbjct: 271 MEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAKMVSYGFVVDLAMYSVLIEGLCQQKD 330

Query: 258 FDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
              A  L  EM+  G  P  R ++  +E     G       F+ E        N  Y + 
Sbjct: 331 IARAVKLFKEMKSSGVAPDVRLLKKVIEAFCREGDFAVIGPFINE--------NAEYLKS 382

Query: 317 GS 318
           GS
Sbjct: 383 GS 384



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 63/149 (42%)

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L  DIS   +L   V    L+  +  S  L+       E  ++    S  +YN+++ V  
Sbjct: 602 LFRDISCKYYLPDVVAHNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCC 661

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           KTG+  +A+    +++ E   P   TYT +I+   + G+ D A++++  +        + 
Sbjct: 662 KTGRIEKAISYLDKMVYEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNI 721

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDG 272
            Y   + G     R + A +   EM   G
Sbjct: 722 AYTAFINGLRKCGRIETALTYFEEMVTKG 750



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 42/79 (53%)

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           S L+   TK  R   A+++  +M+  G V D+  +S L+     Q D     KLF  ++ 
Sbjct: 284 SVLVHGFTKQGRVDKAMDMFAKMVSYGFVVDLAMYSVLIEGLCQQKDIARAVKLFKEMKS 343

Query: 544 NGVEPDAYMFKVLIQAYCK 562
           +GV PD  + K +I+A+C+
Sbjct: 344 SGVAPDVRLLKKVIEAFCR 362


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/281 (20%), Positives = 120/281 (42%), Gaps = 15/281 (5%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHA--------LRSAPNADSALSIMEALK 93
           L+D++    +   + ++ +++    ++P +VT+         +     A   LSI+  ++
Sbjct: 269 LVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMR 328

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
             PN      + + +     K +   E   L  ++         V + +L+     +G +
Sbjct: 329 VAPN----SRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRI 384

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
                  +E           +YN ++ V+ K     +A+   +++ + G  PN  TY ++
Sbjct: 385 PYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCTYNIL 444

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           I+ L   G+L +A +VF  L +      +  Y I++ G      FDEA+ LL++M D+G 
Sbjct: 445 IDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAEVLLSKMEDNGI 504

Query: 274 FPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
            P     V  E + +  F +  NE  +++L +  IK V  Y
Sbjct: 505 IPD---AVTYETIIQALFHKDENEKAQKLLREMVIKGVVVY 542



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +++YS+++  L K K   DA  +  EMI   I P V TFS L+Y F + G  K   +LF+
Sbjct: 193 VVMYSTIIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFN 252

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK 562
            +    + PDAY F +L+ A CK
Sbjct: 253 EMVMKNINPDAYTFNILVDALCK 275



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 1/166 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F +L+  +   G  +     +NE   +       ++NI++    K GK  EA      
Sbjct: 229 VTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAV 288

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++ EG  P   TY  +++    + ++  A  V S +  MR+   S+ Y I++ GF  ++ 
Sbjct: 289 MMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKM 348

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREM 302
            DEA  L +EM   G  P +    +L + + + G I  A E + EM
Sbjct: 349 VDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEM 394



 Score = 46.6 bits (109), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 102/500 (20%), Positives = 186/500 (37%), Gaps = 98/500 (19%)

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR-QVIDEGAIPNSRTYTVMIEHL 217
           ++N  RQ  +  S   +N +++   KT  ++  V +   Q+  +G  P+  T +++I   
Sbjct: 53  SFNRMRQIRQTPSIVEFNKILTYLIKTKNHYPTVLSLSTQMESKGVKPDLFTLSILINCY 112

Query: 218 VNLGKLDSALEVFSALPLMRIKRTSK-QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
            +LG++  A  VF+ +  M +    K    +L    V    F      LN +        
Sbjct: 113 CHLGQMTFAFSVFAKILKMGLCLNGKVNEALLFHDHVLALGFH-----LNHV-------- 159

Query: 277 RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE---DGSDDDEDENDDNNSGVR 333
               + +  + +MG  + A + LR++       NV  Y    DG   D+   D       
Sbjct: 160 -TYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTD------- 211

Query: 334 IAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFF 393
            AYG  L   +  K +  T+  +S  +       KF    RL  +++    +P       
Sbjct: 212 -AYG--LYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINP------- 261

Query: 394 CWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGI 453
                      D Y    ++  L + G ++    +IA +  +G+     T   ++D Y +
Sbjct: 262 -----------DAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCL 310

Query: 454 S-----------------------------------KKADAALKAFHDDRTLCGPISKFK 478
                                               K  D AL  FH+    C  I+  K
Sbjct: 311 VNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHE--MCCRGIAPHK 368

Query: 479 LMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF 538
           +   Y+SL+  L K  R   A  +++EM  + I  D+ T++ L+  F           L 
Sbjct: 369 VT--YNSLIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALV 426

Query: 539 SMVRQNGVEPDAYMFKVLIQAYCK--YLSNS-NLMPD---------AATKELLKKSLWKE 586
             ++++G++P+   + +LI   CK   L N+ ++  D         A T  ++   L KE
Sbjct: 427 KKIKEHGIQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKE 486

Query: 587 GRRKEAAAVEERCEKINDVP 606
           G   EA  +  + E    +P
Sbjct: 487 GLFDEAEVLLSKMEDNGIIP 506


>gi|15228767|ref|NP_191806.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181319|sp|Q9LZP3.1|PP293_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g62470, mitochondrial; Flags: Precursor
 gi|7340718|emb|CAB82961.1| putative protein [Arabidopsis thaliana]
 gi|34365579|gb|AAQ65101.1| At3g62470 [Arabidopsis thaliana]
 gi|332646835|gb|AEE80356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 599

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/312 (20%), Positives = 126/312 (40%), Gaps = 51/312 (16%)

Query: 316 DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEW---SPEVVSLLADAKFVWT 372
           DG D++ +   DN+    ++         + + +   +DE       + ++L + K   +
Sbjct: 101 DGCDEEVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLS 160

Query: 373 TRLVCKVL---RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
             L+ +VL   RH + P  A+ FFCW A + G+ HD      M++ILA+    E +  ++
Sbjct: 161 HDLIVEVLERFRHARKP--AFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVL 218

Query: 430 AKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF------------HDDRTLCGPISKF 477
            ++ + G+ L   T  + +  +  +K+   A+  F                 L   + + 
Sbjct: 219 EEMGTKGL-LTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRA 277

Query: 478 KL------------------MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           KL                  M+ Y+ LL    + +   +A  +  +MI  G+ PD+   +
Sbjct: 278 KLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHN 337

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLS------------NS 567
            ++        +    KLF +++  G  P+   + ++I+ +CK  S            +S
Sbjct: 338 VMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDS 397

Query: 568 NLMPDAATKELL 579
            L PDAA    L
Sbjct: 398 GLQPDAAVYTCL 409



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 89/205 (43%), Gaps = 2/205 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I   A  +A     A+ I E +K    F     T++ L   L +++   E + L  D   
Sbjct: 234 IAMKAFAAAKERKKAVGIFELMKKY-KFKIGVETINCLLDSLGRAKLGKEAQVLF-DKLK 291

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
            +F    + +  L+  +    +L      WN+   +       ++N+++    ++ K  +
Sbjct: 292 ERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSD 351

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A++ F  +  +G  PN R+YT+MI        +++A+E F  +    ++  +  Y  L+ 
Sbjct: 352 AIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLIT 411

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP 275
           GF   ++ D    LL EM++ G  P
Sbjct: 412 GFGTQKKLDTVYELLKEMQEKGHPP 436



 Score = 46.6 bits (109), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 9/123 (7%)

Query: 454 SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP 513
           S+K   A+K FH  ++  GP    +    Y+ ++R   K      AI   ++M+ SG+ P
Sbjct: 346 SRKKSDAIKLFHVMKSK-GPCPNVRS---YTIMIRDFCKQSSMETAIEYFDDMVDSGLQP 401

Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDA 573
           D   ++ L+  F  Q     V +L   +++ G  PD   +  LI    K ++N   MP+ 
Sbjct: 402 DAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALI----KLMANQK-MPEH 456

Query: 574 ATK 576
           AT+
Sbjct: 457 ATR 459



 Score = 40.4 bits (93), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 55/102 (53%), Gaps = 2/102 (1%)

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
           +Y+ L+      K+      +L+EM   G  PD +T++ L+   A Q   +   ++++ +
Sbjct: 405 VYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKM 464

Query: 542 RQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSL 583
            QN +EP  + F +++++Y  +++ +  M  A  +E++KK +
Sbjct: 465 IQNEIEPSIHTFNMIMKSY--FMARNYEMGRAVWEEMIKKGI 504


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 98/226 (43%), Gaps = 43/226 (19%)

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
           +  Y   G+ +  LS ++E  ++    + E+Y  ++ V+ K  +  EA E F++ I EG 
Sbjct: 399 INGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGM 458

Query: 204 IPNSRTYTVMIE-HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
           +P+   +  +I+ H VN G +D A ++   +   ++      +  L++G+    + +EAK
Sbjct: 459 LPDIIMFNALIDGHCVN-GNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAK 517

Query: 263 SLLNEMRDDGKFPGRA--------------MRVALERMQEM---GF----------IQG- 294
            LL+EM++ G  P                 M+ ALE   EM   GF          IQG 
Sbjct: 518 KLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGY 577

Query: 295 --------ANEFLREM-----LPDKRIKNVRYYEDGSDDDEDENDD 327
                   A E LREM      PD            ++DD  ENDD
Sbjct: 578 SKIGEADHAEELLREMQSKGITPDDSTYLYVIEAMKTNDDLVENDD 623



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 114/273 (41%), Gaps = 19/273 (6%)

Query: 12  LSKAFT---QLQTRSFVRAPFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLD 68
           L KAF    ++  R  V + FT  L        LI ++ L  R   +  +   + ++ ++
Sbjct: 338 LDKAFAYRDEMMNRGIVASVFTYNL--------LIHALFLEKRIEEAEDMIKEMREKGVE 389

Query: 69  PFIVTHALR-----SAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT 123
           P +VT+ ++        NA  ALS+ + +    N      T  +L  V  K  R  E + 
Sbjct: 390 PDVVTYNIQINGYCRCGNAKKALSLFDEMVEK-NIRPTVETYTSLIDVFGKRNRMSEAEE 448

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE-SYNIVMSVY 182
                     L   + F  L+  +  +G+++       E    AK++  E ++N +M  Y
Sbjct: 449 KFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEM-DNAKVVPDEVTFNTLMQGY 507

Query: 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
            +  K  EA +   ++ + G  P+  +Y  +I      G +  ALEVF  +  +    T 
Sbjct: 508 CRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTL 567

Query: 243 KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             Y  L++G+  +   D A+ LL EM+  G  P
Sbjct: 568 LTYNALIQGYSKIGEADHAEELLREMQSKGITP 600



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 96/221 (43%), Gaps = 2/221 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           ++A  I + +K + N   +  T ++  + L K +R  E   ++  +  S  +  +V +  
Sbjct: 269 EAASKIFKTMK-DKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNA 327

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+      GDL+   +  +E   R  + S  +YN+++       +  EA +  +++ ++G
Sbjct: 328 LIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKG 387

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  TY + I      G    AL +F  +    I+ T + Y  L++ F    R  EA+
Sbjct: 388 VEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAE 447

Query: 263 SLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREM 302
               +   +G  P   M  AL +     G I  A + L+EM
Sbjct: 448 EKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEM 488



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 86/210 (40%), Gaps = 5/210 (2%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T + +  +L +  +  + K  IG +         V +  ++  Y   G  E     +   
Sbjct: 219 TFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTM 278

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
           + +       +YN  +S   K  +  EA     ++++ G +PN+ TY  +I+   N G L
Sbjct: 279 KDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDL 338

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
           D A      +    I  +   Y +L+      +R +EA+ ++ EMR+ G  P     V  
Sbjct: 339 DKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPD----VVT 394

Query: 284 ERMQEMGFIQGANEFLREMLPDKRI-KNVR 312
             +Q  G+ +  N      L D+ + KN+R
Sbjct: 395 YNIQINGYCRCGNAKKALSLFDEMVEKNIR 424



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 77/191 (40%), Gaps = 49/191 (25%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH--DDRT 469
           M+ IL R G  +     I  +   G++    T   +I+ Y +  K +AA K F    D+ 
Sbjct: 223 MINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTMKDKN 282

Query: 470 L---CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
           L   C           Y+S +  L K +R  +A  VL +++ SG+VP+  T++ L+    
Sbjct: 283 LKPDC---------YTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCC 333

Query: 527 LQGD--------------------------------EKIVQKLFSMV---RQNGVEPDAY 551
            +GD                                EK +++   M+   R+ GVEPD  
Sbjct: 334 NKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVV 393

Query: 552 MFKVLIQAYCK 562
            + + I  YC+
Sbjct: 394 TYNIQINGYCR 404



 Score = 46.6 bits (109), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 12/125 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y+  +    +C     A+++ +EM+   I P V+T++ L+  F  +      ++ F 
Sbjct: 392 VVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFK 451

Query: 540 MVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEG 587
              + G+ PD  MF  LI  +C            K + N+ ++PD  T   L +   +E 
Sbjct: 452 KSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRER 511

Query: 588 RRKEA 592
           + +EA
Sbjct: 512 KVEEA 516



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 90/450 (20%), Positives = 169/450 (37%), Gaps = 52/450 (11%)

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
           R R  + +T  +++++S Y +  K  EA+E    + +   IP + T   ++  L+ L K+
Sbjct: 139 RNRLNVKTTLVFDLLLSAYCQFRKPDEALECLNLMKENEIIPKTETCNSLLSLLLKLNKI 198

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVA 282
             A  V+  +  M IK +   + I++       ++ +AK  +  M   G  P        
Sbjct: 199 KMAWFVYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTV 258

Query: 283 LERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDG--SDDDEDENDDNNSGVRIAYGVQL 340
           +      G  + A++  + M  DK +K   Y  +   S   ++   +  SGV       L
Sbjct: 259 INGYCLRGKFEAASKIFKTM-KDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKL---L 314

Query: 341 KPWLDPKALA-NTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQ 399
           +  L P A+  N L +       L  D  F +   ++ +                     
Sbjct: 315 ESGLVPNAVTYNALIDGCCNKGDL--DKAFAYRDEMMNR--------------------- 351

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
            G    V+    ++  L     +E  + +I ++R  G+     T  + I+ Y     A  
Sbjct: 352 -GIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKK 410

Query: 460 ALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
           AL  F +  ++ +   +        Y+SL+    K  R  +A    ++ I  G++PD+  
Sbjct: 411 ALSLFDEMVEKNIRPTVET------YTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIM 464

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLS 565
           F+ L+    + G+     +L   +    V PD   F  L+Q YC+             + 
Sbjct: 465 FNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMK 524

Query: 566 NSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
              + PD  +   L     K G  K+A  V
Sbjct: 525 ERGIKPDHISYNTLISGYSKRGDMKDALEV 554



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 22/143 (15%)

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A + +  M   G+ P+V T++ ++  + L+G  +   K+F  ++   ++PD Y +   I 
Sbjct: 236 AKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFIS 295

Query: 559 AYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
             CK             L  S L+P+A T   L      +G   +A A   R E +N   
Sbjct: 296 RLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAY--RDEMMN--- 350

Query: 607 SLALRGHIWAVSSADLTRVHSIY 629
               RG + +V + +L  +H+++
Sbjct: 351 ----RGIVASVFTYNLL-IHALF 368



 Score = 38.9 bits (89), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 3/127 (2%)

Query: 160 WNEYRQRAKL---LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           W  Y +  K+    S  ++NI++++  + GK  +A +    +   G  PN  TY  +I  
Sbjct: 202 WFVYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVING 261

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
               GK ++A ++F  +    +K     Y   +       R +EA  +L ++ + G  P 
Sbjct: 262 YCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPN 321

Query: 277 RAMRVAL 283
                AL
Sbjct: 322 AVTYNAL 328


>gi|357494871|ref|XP_003617724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519059|gb|AET00683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 861

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 96/218 (44%), Gaps = 5/218 (2%)

Query: 86  LSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQ 145
           L IM A+K NP+    Q  ++ L     K ++N E   +  D+    +    V +  +++
Sbjct: 259 LHIMIAMKCNPSIYTYQEIINGLL----KRRKNDEAFRVFNDLKDRGYFPDRVMYTTVIK 314

Query: 146 WYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP 205
            +   G L      W E  Q+  + +  +YN+++  Y K     EA + +  +   G   
Sbjct: 315 GFCDMGLLAEARKLWFEMIQKGLVPNEYTYNVMIYGYCKVRDFAEARKLYDDMCGRGYAE 374

Query: 206 NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL 265
           N  +Y+ MI  L   GK D AL +F  +    I R    Y  L++G        +A +LL
Sbjct: 375 NVVSYSTMISGLYLHGKTDEALSLFHEMSRKGIARDLISYNSLIKGLCQEGELAKATNLL 434

Query: 266 NEMRDDGKFPGRAMRVALER-MQEMGFIQGANEFLREM 302
           N++   G  P  +    L + + ++G  +GA   L++M
Sbjct: 435 NKLLIQGLEPSVSSFTPLIKCLCKVGDTEGAMRLLKDM 472



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/251 (20%), Positives = 101/251 (40%), Gaps = 18/251 (7%)

Query: 75  ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFL 134
           AL  A    +A S++E     P+F     +L     +L ++    E+  +   +    FL
Sbjct: 106 ALVDAGAVKAAKSLLEY----PDFVPKNDSLEGYVRLLGENGMVEEVFDVFVSLKKVGFL 161

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKL-----LSTESYNIVMSVYAKTGKNF 189
             + +F   +      G  +LV   W  Y    +      +  E+   ++  +    K F
Sbjct: 162 PSASSFNVCLLACLKVGRTDLV---WKLYELMIESGVGVNIDVETVGCLIKAFCAENKVF 218

Query: 190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV 249
              E  RQV+++G   ++  +  +I       + D   E+   +  M+   +   Y  ++
Sbjct: 219 NGYELLRQVLEKGLCVDNTVFNALINGFCKQKQYDRVSEILHIMIAMKCNPSIYTYQEII 278

Query: 250 EGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREML----- 303
            G +   + DEA  + N+++D G FP R M    ++   +MG +  A +   EM+     
Sbjct: 279 NGLLKRRKNDEAFRVFNDLKDRGYFPDRVMYTTVIKGFCDMGLLAEARKLWFEMIQKGLV 338

Query: 304 PDKRIKNVRYY 314
           P++   NV  Y
Sbjct: 339 PNEYTYNVMIY 349



 Score = 40.0 bits (92), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 40/80 (50%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y  ++  L K +++ +A  V  ++   G  PD   ++ ++  F   G     +KL+  + 
Sbjct: 274 YQEIINGLLKRRKNDEAFRVFNDLKDRGYFPDRVMYTTVIKGFCDMGLLAEARKLWFEMI 333

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
           Q G+ P+ Y + V+I  YCK
Sbjct: 334 QKGLVPNEYTYNVMIYGYCK 353


>gi|326522248|dbj|BAK07586.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 548

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 15/151 (9%)

Query: 495 RDFDA-INVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
           RD DA + VL+EM   GIVPDV T++ ++  +  + D K  QKLF  +   G  PD  M+
Sbjct: 219 RDLDAALKVLDEMPGWGIVPDVVTYTTVLSAYCAKEDLKGAQKLFDDIIAGGRVPDVTMY 278

Query: 554 KVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEK 601
            VLI  YC+             +  + + P+  T  ++ ++  KEG+  EA  +      
Sbjct: 279 TVLIDGYCRTGKIQDAARIMDEMEAAGVQPNEVTYSVVIEACCKEGKSAEACNLMREMLG 338

Query: 602 INDVPSLALRGHIWAVSSAD--LTRVHSIYR 630
               P   L   +  V   D      H ++R
Sbjct: 339 AGHTPDTPLAAKVVDVMCQDGKAEEAHQMWR 369



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 6/169 (3%)

Query: 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT 211
           DL+  L   +E      +    +Y  V+S Y        A + F  +I  G +P+   YT
Sbjct: 220 DLDAALKVLDEMPGWGIVPDVVTYTTVLSAYCAKEDLKGAQKLFDDIIAGGRVPDVTMYT 279

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
           V+I+     GK+  A  +   +    ++     Y +++E      +  EA +L+ EM   
Sbjct: 280 VLIDGYCRTGKIQDAARIMDEMEAAGVQPNEVTYSVVIEACCKEGKSAEACNLMREMLGA 339

Query: 272 GKFPGRAMRV-ALERMQEMGFIQGANEFLREML-----PDKRIKNVRYY 314
           G  P   +    ++ M + G  + A++  R M+     PD  I N   Y
Sbjct: 340 GHTPDTPLAAKVVDVMCQDGKAEEAHQMWRWMVKKNVPPDNTITNTLIY 388



 Score = 42.4 bits (98), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 57/114 (50%), Gaps = 2/114 (1%)

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           N ++    K+G   EA + F + +++G  P+  TY  +I  L   G+L  A +V+  +  
Sbjct: 384 NTLIYWLCKSGMVREARKLFDE-LEKGYKPSLLTYNSLISGLCENGELQEAGKVWDDMVE 442

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQE 288
            R +  +  Y  L++GF  + + DE  ++  EM   G  P + + +V ++ + E
Sbjct: 443 RRYEPNAMTYEALIKGFCKIGKPDEGAAVFTEMVTKGCAPSKVLYQVLVDSLSE 496


>gi|449465242|ref|XP_004150337.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Cucumis sativus]
          Length = 690

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 106/546 (19%), Positives = 206/546 (37%), Gaps = 56/546 (10%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKS-NPNFSHNQ---STLHALATVLAKSQRNHELK 122
           L P   +  L+S  + D AL       S  P F H+    S +  + +  + S+R  +++
Sbjct: 133 LTPAEASEILKSLNSPDLALQFFHRCSSLCPKFRHDAFTYSRILLMLSHSSSSKRIDQVR 192

Query: 123 TLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVY 182
            ++  +   +          L++ +S++ DLEL      ++  R   L+  +Y  ++  +
Sbjct: 193 EILSQMDRDQIRGTISTVNILIKIFSSNEDLELCTGLIKKWDLR---LNAYTYRCLLQAH 249

Query: 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
            ++  +  A   + ++  +G   +   Y ++++ L    +LD + +VF  + L       
Sbjct: 250 IRSRDSDRAFNVYMEMWSKGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDE 309

Query: 243 KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLRE 301
             Y I++     + R +E+ +L  EM   G  P   A    ++ + + G +  A      
Sbjct: 310 YTYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCN 369

Query: 302 MLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVV 361
           M+ +    N R  E                    Y + L   +    L   LDE      
Sbjct: 370 MIKN----NCRPNE------------------FTYSIILNVLVAEGQLGR-LDEVLEVSN 406

Query: 362 SLLADAKFVWTTRLVCKVLRHFKSPETAWHFFC--WVAYQPGYTHDVYALEKMLTILARH 419
             +  + + +  R + K L H      A   FC  W ++  G   D Y    ML  L R 
Sbjct: 407 KFINKSIYAYLVRTLSK-LGH---SSEAHRLFCNMW-SFHDGGDRDAYI--SMLESLCRG 459

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL 479
           G       L++K+   G+         ++   G  K+  + L   ++     GP   F  
Sbjct: 460 GKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQV-SHLHDLYEKMKQDGP---FPD 515

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +  Y+ L+ +L +  +  +A+ V EE+  S   PD+ +++ L+      GD       F 
Sbjct: 516 IFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFL 575

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEG 587
            ++  G+ PD   +  LI+ + K             +      P+  T  +L   L + G
Sbjct: 576 EMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCLERAG 635

Query: 588 RRKEAA 593
           R  E  
Sbjct: 636 RTAETV 641



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/393 (20%), Positives = 157/393 (39%), Gaps = 51/393 (12%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y I++ +  K G+  E++  F +++ +G  PN   Y  MI+ L   G +D A+ +F  +
Sbjct: 311 TYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNM 370

Query: 234 PLMRIKRTSKQYLILV-----EGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER-MQ 287
                +     Y I++     EG +G  R DE   + N      KF  +++   L R + 
Sbjct: 371 IKNNCRPNEFTYSIILNVLVAEGQLG--RLDEVLEVSN------KFINKSIYAYLVRTLS 422

Query: 288 EMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDEN--DDNNSGVRIAYGVQLKPWLD 345
           ++G    A+     M           + DG D D   +  +    G +    ++L   + 
Sbjct: 423 KLGHSSEAHRLFCNMWS---------FHDGGDRDAYISMLESLCRGGKTVEAIELLSKVH 473

Query: 346 PKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHD 405
            K ++     ++  V+S L   K V                 +  H       Q G   D
Sbjct: 474 EKGISTDTMMYN-TVLSTLGKLKQV-----------------SHLHDLYEKMKQDGPFPD 515

Query: 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465
           ++    +++ L R G V+    +  +L S   +    +   +I+  G +   D A   F 
Sbjct: 516 IFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFL 575

Query: 466 D--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
           +  D+ L   +      + YS+L+    K  +   A ++ + MI  G  P++ T++ L+ 
Sbjct: 576 EMQDKGLNPDV------VTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLD 629

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
                G       L++ +R+ G+ PD+  + +L
Sbjct: 630 CLERAGRTAETVDLYAKLREQGLTPDSITYAIL 662



 Score = 46.6 bits (109), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 103/225 (45%), Gaps = 25/225 (11%)

Query: 345 DPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFF--CWVAYQPGY 402
           +P +   T+D+   ++ S         T     ++L+   SP+ A  FF  C  +  P +
Sbjct: 107 NPHSSLITIDDRFSDLSSYFQSLSVSLTPAEASEILKSLNSPDLALQFFHRC-SSLCPKF 165

Query: 403 THDVYALEKMLTILARHGHVELVDR---LIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
            HD +   ++L +L+     + +D+   +++++  D +R   ST+ ++I  +        
Sbjct: 166 RHDAFTYSRILLMLSHSSSSKRIDQVREILSQMDRDQIRGTISTVNILIKIF-------- 217

Query: 460 ALKAFHDDRTLC-GPISKFKLML---LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
              + ++D  LC G I K+ L L    Y  LL+   + +    A NV  EM   G   D+
Sbjct: 218 ---SSNEDLELCTGLIKKWDLRLNAYTYRCLLQAHIRSRDSDRAFNVYMEMWSKGYQLDI 274

Query: 516 QTFSGLMYHFALQGDEKIVQ--KLFSMVRQNGVEPDAYMFKVLIQ 558
             ++ L+   AL  DE++ +  K+F  ++     PD Y + ++I+
Sbjct: 275 FAYNMLLD--ALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIR 317



 Score = 39.3 bits (90), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 29/145 (20%), Positives = 66/145 (45%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T + L + L +  +  E   +  ++ SS      +++ +L+     +GD++     + E 
Sbjct: 518 TYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEM 577

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
           + +       +Y+ ++  + KT K   A   F ++I +G  PN  TY ++++ L   G+ 
Sbjct: 578 QDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCLERAGRT 637

Query: 224 DSALEVFSALPLMRIKRTSKQYLIL 248
              +++++ L    +   S  Y IL
Sbjct: 638 AETVDLYAKLREQGLTPDSITYAIL 662


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 1/183 (0%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDI-SSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
           T  AL T    +++  E   L  +I +SS +    V +  L+  +  SG+LE  +     
Sbjct: 150 TFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGV 209

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
              R  + +  +Y+ ++    K G   +A++ FR++  +G +PN  TYT +I  L    K
Sbjct: 210 MEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHK 269

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA 282
           +D+A  +   +        +  Y  L++G+  + R +EAK L  EM      P R     
Sbjct: 270 VDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTC 329

Query: 283 LER 285
           L R
Sbjct: 330 LVR 332



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 97/214 (45%), Gaps = 7/214 (3%)

Query: 69  PFIVT-----HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT 123
           P +VT     H L +A   D+A  +M+ + +      +  + +AL     +  R  E K 
Sbjct: 252 PNVVTYTTLIHGLCAAHKVDAARLLMDEMTAT-CCPPDTVSYNALLDGYCRLGRIEEAKQ 310

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKL-LSTESYNIVMSVY 182
           L  ++++   L   + +  L++ +  +  LE         +  A +     +Y+IV++ Y
Sbjct: 311 LFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGY 370

Query: 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
           ++  +  EA E  +++I     PN+ TY+ +I+ L   G++D A+EV   +   R++ + 
Sbjct: 371 SRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSV 430

Query: 243 KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
             +  ++     +   DEA  LL  M   G  PG
Sbjct: 431 GTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPG 464



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 102/246 (41%), Gaps = 10/246 (4%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           L+D F  +  L  A      L +ME  K  PN     S LH     L K+    +   L 
Sbjct: 190 LIDGFCKSGNLEKAMKM---LGVMEGRKCVPNVVTYSSLLHG----LCKAGDLDQALDLF 242

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
             ++S   +   V +  L+     +  ++      +E         T SYN ++  Y + 
Sbjct: 243 RRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRL 302

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR-IKRTSKQ 244
           G+  EA + F+++  +  +P+  TYT ++    N  +L+ A  +   +     I      
Sbjct: 303 GRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVT 362

Query: 245 YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREML 303
           Y I+V G+   +RF EA   + EM      P      +L + + + G +  A E L+ M+
Sbjct: 363 YSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMV 422

Query: 304 PDKRIK 309
            +KR++
Sbjct: 423 -NKRVE 427



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 1/96 (1%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVID-EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           +Y+ V++ + K G+   A E  R+++  +G  P+  TYT +++ L   GK+D A E+   
Sbjct: 79  TYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVRE 138

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           + L  ++     +  L+ G+    + DEA  L  E+
Sbjct: 139 MKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEI 174



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 13/136 (9%)

Query: 453 ISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF-SGI 511
           ++ KA   LK   D +++  P      ++ YS+++    K      A  +L EM+   GI
Sbjct: 56  LTSKAYEVLKEMRDGKSV-APD-----LVTYSTVINGFCKQGEMDRACEILREMVTRDGI 109

Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMP 571
            PDV T++ ++      G      ++   ++  GVEPD + F  LI  +C    N+  + 
Sbjct: 110 APDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWC----NARKVD 165

Query: 572 DAAT--KELLKKSLWK 585
           +A    KE+L  S WK
Sbjct: 166 EALKLYKEILTSSSWK 181



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 82/205 (40%), Gaps = 17/205 (8%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   DV     ++  L R G ++    ++ +++  G+     T   +I  +  ++K D A
Sbjct: 108 GIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEA 167

Query: 461 LKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           LK + +  T     S +K  ++ Y++L+    K      A+ +L  M     VP+V T+S
Sbjct: 168 LKLYKEILT----SSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYS 223

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNS 567
            L++     GD      LF  +   G  P+   +  LI   C              ++ +
Sbjct: 224 SLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTAT 283

Query: 568 NLMPDAATKELLKKSLWKEGRRKEA 592
              PD  +   L     + GR +EA
Sbjct: 284 CCPPDTVSYNALLDGYCRLGRIEEA 308



 Score = 40.8 bits (94), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 41/217 (18%), Positives = 88/217 (40%), Gaps = 8/217 (3%)

Query: 60  SLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNH 119
           S L DR+    +V     +A   + A  ++E +K+      +  T   +    ++++R  
Sbjct: 319 SCLPDRITYTCLV-RGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFV 377

Query: 120 ELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM 179
           E    I ++ +      +V + +L+     +G ++  +        +    S  ++N V+
Sbjct: 378 EAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVI 437

Query: 180 SVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIK 239
               + G   EA +    +   G  P   TYT ++E     G+++ A E+F  +     K
Sbjct: 438 GALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKK 497

Query: 240 RTSKQYLI-------LVEGFVGVERFDEAKSLLNEMR 269
            +S   L+       L+ G       D+A +++ E+R
Sbjct: 498 SSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEELR 534



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 38/78 (48%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YSSL+  L K  R   A+ VL+ M+   + P V TF+ ++      GD     KL   + 
Sbjct: 398 YSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMA 457

Query: 543 QNGVEPDAYMFKVLIQAY 560
            +G+EP    +  L++ +
Sbjct: 458 AHGLEPGMVTYTTLLEGF 475


>gi|242078445|ref|XP_002443991.1| hypothetical protein SORBIDRAFT_07g005470 [Sorghum bicolor]
 gi|241940341|gb|EES13486.1| hypothetical protein SORBIDRAFT_07g005470 [Sorghum bicolor]
          Length = 602

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 5/207 (2%)

Query: 71  IVTHALRSAPNADSALSIMEAL--KSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDI 128
           I+  +L        A +I E L  +   +F  +Q   H +  +  K+    + + L   +
Sbjct: 215 IILKSLVEGDKYKEAEAIFEDLLNEKRTSFKPDQKMFHMMIYMYKKAGDYAQARKLFAQM 274

Query: 129 SSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN 188
           S  K    +V F +LM + +   D + V S +++ ++        SY++++  Y K  + 
Sbjct: 275 SERKIPLSTVTFNSLMSFET---DYKEVSSIYDQMQRAGMKPDVVSYSLLIKAYGKARRE 331

Query: 189 FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
            EA+  F +++D G  P  ++Y ++++     G +D A  VF A+   R++     Y  +
Sbjct: 332 EEALAVFEEMLDAGVRPTRKSYNILLDAFAISGLVDEANTVFKAMRRHRVEPDLCSYTTM 391

Query: 249 VEGFVGVERFDEAKSLLNEMRDDGKFP 275
           V  +V     + A+     ++DDG  P
Sbjct: 392 VLAYVNASDMNGAEKFFRRIKDDGLKP 418



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 46/79 (58%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS L++   K +R+ +A+ V EEM+ +G+ P  ++++ L+  FA+ G       +F  +R
Sbjct: 318 YSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILLDAFAISGLVDEANTVFKAMR 377

Query: 543 QNGVEPDAYMFKVLIQAYC 561
           ++ VEPD   +  ++ AY 
Sbjct: 378 RHRVEPDLCSYTTMVLAYV 396



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 40/201 (19%), Positives = 83/201 (41%), Gaps = 22/201 (10%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK---KADAALKAFHDDR 468
           ++T   + G     +R++  +   G +    +   +++ YG  K   KA+A  +      
Sbjct: 146 LVTAYGKLGDFSRAERVLKYMNKKGYQPSVISQTGLMEAYGRGKQYRKAEAVFRRMQTSG 205

Query: 469 TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMI---FSGIVPDVQTFSGLMYHF 525
               P++       Y  +L++L +  +  +A  + E+++    +   PD + F  ++Y +
Sbjct: 206 PEPSPVT-------YQIILKSLVEGDKYKEAEAIFEDLLNEKRTSFKPDQKMFHMMIYMY 258

Query: 526 ALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY---------LSNSNLMPDAATK 576
              GD    +KLF+ + +  +      F  L+     Y         +  + + PD  + 
Sbjct: 259 KKAGDYAQARKLFAQMSERKIPLSTVTFNSLMSFETDYKEVSSIYDQMQRAGMKPDVVSY 318

Query: 577 ELLKKSLWKEGRRKEAAAVEE 597
            LL K+  K  R +EA AV E
Sbjct: 319 SLLIKAYGKARREEEALAVFE 339


>gi|222631078|gb|EEE63210.1| hypothetical protein OsJ_18020 [Oryza sativa Japonica Group]
          Length = 975

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 104/230 (45%), Gaps = 8/230 (3%)

Query: 77  RSAPNADSALSIMEALKSN--PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFL 134
           R  P A  AL ++  +++N  P +  N + +      L  S R  E    +  +    FL
Sbjct: 523 RKDPKA--ALDLLREMQTNGHPPWIKNCTEM---VQQLCFSGRVTEAVQFLDGMLQIGFL 577

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
              V +   M     +G+++  L  + +   +  L    ++NI+++ + K+ K  EA + 
Sbjct: 578 PDIVTYSAAMNGMCNTGEVDDALHLFRDISCKYYLPDVVAHNILINGFRKSSKLDEAQKI 637

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
             +++++G  P+  TY +MI+     G+++ A+     +     + T   Y  L++GF  
Sbjct: 638 MEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMVYEEKQPTVITYTSLIDGFCS 697

Query: 255 VERFDEAKSLLNEMRDDGKFPGRAMRVA-LERMQEMGFIQGANEFLREML 303
             R DEA  L  EMR+ G  P      A +  +++ G I+ A  +  EM+
Sbjct: 698 AGRPDEAIKLWCEMREKGCAPNNIAYTAFINGLRKCGRIETALTYFEEMV 747



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 118/563 (20%), Positives = 201/563 (35%), Gaps = 107/563 (19%)

Query: 60  SLLNDRLLDPFIVTHALR------------SAPNADS----------ALSIMEALKSNPN 97
           S L   LLD F    A R            +AP A+S          AL         P 
Sbjct: 40  SYLAHHLLDEFSRPRATRDAARLRRLAAELTAPAAESVLLRLPSWRHALDFFRWAADQPG 99

Query: 98  FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVL 157
           F H+  +L+A+A++L + QR H L  L  D  S++ L        L++    +G  +  +
Sbjct: 100 FRHSCYSLNAMASLLPRHQRAH-LDRLAADAISARCLMTPGALGFLLRCLGAAGLPDTAV 158

Query: 158 STWNEYRQRAKLL-STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV---- 212
             ++  R       ++ +YN ++   AK G+  +A    R+++      +   YT+    
Sbjct: 159 RAFDAARASFGCTPNSYTYNCLLDALAKAGRADDAQARLREMVARCGDGSVDKYTLTSLL 218

Query: 213 ------------------------MIEHLVNL--------GKLDSALEVFSALPLMRIKR 240
                                   + EH++          GK+D A+E+  ++  + ++ 
Sbjct: 219 RCYCNAGRPDDANDVFQRMSELGWVDEHVLTTLMVAFSKWGKVDGAVELLGSMEALGMRL 278

Query: 241 TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFL 299
           + K   +LV GF    R D+A  +  +M   G     AM  V +E + +   I  A +  
Sbjct: 279 SEKTLSVLVHGFTKQGRVDKAMDMFAKMVSYGFVVDLAMYSVLIEGLCQQKDIARAVKLF 338

Query: 300 REMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPE 359
           +EM       +VR  +   +    E D         + V + P+++  A           
Sbjct: 339 KEMKSSGVAPDVRLLKKVIEAFCREGD---------FAV-IGPFINENA----------- 377

Query: 360 VVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFF-CWVAYQPGYTHDVYALEKMLTILAR 418
               L     V    +V + L H    E A+      V       +DV     ML I   
Sbjct: 378 --EYLKSGSVVPLYNVVLEELVHCGEVEAAYQLLRSMVCGGQAVNNDVAGGAHMLHI--- 432

Query: 419 HGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFK 478
                   R  AK  SD       +  +++      KK D AL A   D    G   K  
Sbjct: 433 --------REDAKPNSD-------SFNIVVCGLCKVKKLDMAL-ALTKDMISLGCKGK-- 474

Query: 479 LMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF 538
            +L+++ L+  L    R  +   +  +M   G+ P   T++ L Y    + D K    L 
Sbjct: 475 -ILMFNDLIHELCNMDRLEEGYGIFNQMKDLGLTPSEFTYNSLFYGICRRKDPKAALDLL 533

Query: 539 SMVRQNGVEPDAYMFKVLIQAYC 561
             ++ NG  P       ++Q  C
Sbjct: 534 REMQTNGHPPWIKNCTEMVQQLC 556



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 80/190 (42%), Gaps = 13/190 (6%)

Query: 379 VLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR 438
           VL    S   A  FF W A QPG+ H  Y+L  M ++L RH    L DRL A   S    
Sbjct: 77  VLLRLPSWRHALDFFRWAADQPGFRHSCYSLNAMASLLPRHQRAHL-DRLAADAISARCL 135

Query: 439 LPFSTIRLIIDFYGISKKADAALKAFHDDRTL--CGPISKFKLMLLYSSLLRTLTKCKRD 496
           +    +  ++   G +   D A++AF   R    C P S       Y+ LL  L K  R 
Sbjct: 136 MTPGALGFLLRCLGAAGLPDTAVRAFDAARASFGCTPNS-----YTYNCLLDALAKAGRA 190

Query: 497 FDAINVLEEMIF---SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
            DA   L EM+     G V D  T + L+  +   G       +F  + + G   D ++ 
Sbjct: 191 DDAQARLREMVARCGDGSV-DKYTLTSLLRCYCNAGRPDDANDVFQRMSELGW-VDEHVL 248

Query: 554 KVLIQAYCKY 563
             L+ A+ K+
Sbjct: 249 TTLMVAFSKW 258



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 1/131 (0%)

Query: 185 TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQ 244
           +G+  EAV+    ++  G +P+  TY+  +  + N G++D AL +F  +           
Sbjct: 558 SGRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKYYLPDVVA 617

Query: 245 YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREML 303
           + IL+ GF    + DEA+ ++ EM + G FP      + ++   + G I+ A  +L +M+
Sbjct: 618 HNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMV 677

Query: 304 PDKRIKNVRYY 314
            +++   V  Y
Sbjct: 678 YEEKQPTVITY 688



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 118/302 (39%), Gaps = 39/302 (12%)

Query: 31  NKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNA---DSALS 87
           N +A  L R Q     RLA  + S+  L        + P  +   LR    A   D+A+ 
Sbjct: 108 NAMASLLPRHQRAHLDRLAADAISARCL--------MTPGALGFLLRCLGAAGLPDTAVR 159

Query: 88  IMEALKSNPNFSHNQSTLHALATVLAKSQRN-------HELKTLIGDISSSKFLNVSVNF 140
             +A +++   + N  T + L   LAK+ R         E+    GD S  K+       
Sbjct: 160 AFDAARASFGCTPNSYTYNCLLDALAKAGRADDAQARLREMVARCGDGSVDKY-----TL 214

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI---VMSVYAKTGKNFEAVETFRQ 197
            +L++ Y  +G  +      N+  QR   L     ++   +M  ++K GK   AVE    
Sbjct: 215 TSLLRCYCNAGRPD----DANDVFQRMSELGWVDEHVLTTLMVAFSKWGKVDGAVELLGS 270

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G   + +T +V++      G++D A+++F+ +           Y +L+EG    + 
Sbjct: 271 MEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAKMVSYGFVVDLAMYSVLIEGLCQQKD 330

Query: 258 FDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
              A  L  EM+  G  P  R ++  +E     G       F+ E        N  Y + 
Sbjct: 331 IARAVKLFKEMKSSGVAPDVRLLKKVIEAFCREGDFAVIGPFINE--------NAEYLKS 382

Query: 317 GS 318
           GS
Sbjct: 383 GS 384



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 63/149 (42%)

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L  DIS   +L   V    L+  +  S  L+       E  ++    S  +YN+++ V  
Sbjct: 602 LFRDISCKYYLPDVVAHNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCC 661

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           KTG+  +A+    +++ E   P   TYT +I+   + G+ D A++++  +        + 
Sbjct: 662 KTGRIEKAISYLDKMVYEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNI 721

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDG 272
            Y   + G     R + A +   EM   G
Sbjct: 722 AYTAFINGLRKCGRIETALTYFEEMVTKG 750



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 42/79 (53%)

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           S L+   TK  R   A+++  +M+  G V D+  +S L+     Q D     KLF  ++ 
Sbjct: 284 SVLVHGFTKQGRVDKAMDMFAKMVSYGFVVDLAMYSVLIEGLCQQKDIARAVKLFKEMKS 343

Query: 544 NGVEPDAYMFKVLIQAYCK 562
           +GV PD  + K +I+A+C+
Sbjct: 344 SGVAPDVRLLKKVIEAFCR 362


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 80/414 (19%), Positives = 166/414 (40%), Gaps = 45/414 (10%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS-A 232
           SY  +++  AK G   +A++ F ++ + G  P+   Y ++I+     G + +A E++   
Sbjct: 186 SYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERL 245

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM---RVALERMQEM 289
           L    +      Y +++ G     +FDE+  + + M+ + +  G+ +      +  +   
Sbjct: 246 LKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNER--GQDLYTYSTLIHGLCGS 303

Query: 290 GFIQGANEFLREML-----PDKRIKNVR---YYEDGSDDDEDE--NDDNNSGVR--IAYG 337
           G + GA    +EM      PD  + N     Y   G  ++  E        G R  ++Y 
Sbjct: 304 GNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYN 363

Query: 338 VQLKPWLDPKALANTLDEWS--PEVVSLLADAKFVWTTRLVCK------VLRHFKSPETA 389
           + ++   +   +   +  W   PE         +      +CK       L   +  E  
Sbjct: 364 ILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENG 423

Query: 390 WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID 449
                          D +A   M+  L R G ++ V  ++ ++   G +        +I+
Sbjct: 424 RGDL-----------DTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVIN 472

Query: 450 FYGISKKADAALKAFHDDRTLCGPISK--FKLMLLYSSLLRTLTKCKRDFDAINVLEEMI 507
            +  + K + AL+ F +       +SK  F  ++ Y++L+  L+K +R  +A  +++EM+
Sbjct: 473 GFVRASKLEDALRFFGN------MVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEML 526

Query: 508 FSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
             G  P++ T+S LM          +   L+    + G +PD  M  ++I   C
Sbjct: 527 HKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLC 580



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 105/247 (42%), Gaps = 15/247 (6%)

Query: 364 LADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVE 423
           +A A    + + V K+L+  K+P +A   F  V   PGY+H  Y    +L  L     V 
Sbjct: 1   MASAPKSLSPKRVIKLLKSEKNPHSALSIFDSVTRFPGYSHTPYVFHHILKRLFDPKLVA 60

Query: 424 LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLY 483
            V R++  +R+   + P      +I  Y  +   D AL  F     + G     +    Y
Sbjct: 61  HVSRIVELIRTQKCKCPEDVALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIR---SY 117

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           +SLL  L +  +  +A +        G+ P++QT++ L+     +      ++L + + +
Sbjct: 118 NSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWE 177

Query: 544 NGVEPDAYMFKVLIQAYCK--YLSNS----------NLMPDAATKELLKKSLWKEGRRKE 591
            G  PD + +  LI +  K  Y+S++           + PD A   +L    +K+G    
Sbjct: 178 QGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILN 237

Query: 592 AAAVEER 598
           A+ + ER
Sbjct: 238 ASEIWER 244



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 398 YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA 457
           ++ G++ DV++   ++  LA++G++    +L  ++   G+    +   ++ID  G  KK 
Sbjct: 176 WEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILID--GFFKKG 233

Query: 458 DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
           D    +   +R L GP S +  +  Y+ ++  L KC +  ++  +   M  +    D+ T
Sbjct: 234 DILNASEIWERLLKGP-SVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYT 292

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
           +S L++     G+     +++  + +NGV PD  ++  ++  Y
Sbjct: 293 YSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGY 335



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 114/565 (20%), Positives = 197/565 (34%), Gaps = 87/565 (15%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           L P  V   L+S  N  SALSI +++   P +SH     H            H LK L  
Sbjct: 8   LSPKRVIKLLKSEKNPHSALSIFDSVTRFPGYSHTPYVFH------------HILKRLF- 54

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
                K +      + L++        ++ L+                   V+  YAK  
Sbjct: 55  ---DPKLVAHVSRIVELIRTQKCKCPEDVALT-------------------VIKAYAKNS 92

Query: 187 KNFEAVETFRQVIDE-GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
              +A++ F+++ +  G  P  R+Y  ++  L+   K D A   F     M +    + Y
Sbjct: 93  MPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTY 152

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLP 304
            IL++     ++FD+AK LLN M + G  P   +    +  + + G++  A +   EM  
Sbjct: 153 NILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPE 212

Query: 305 DKRIKNVRYYE---DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVV 361
                +V  Y    DG     D  + +    R+  G  + P          +  ++  + 
Sbjct: 213 RGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYP---------NIPSYNVMIN 263

Query: 362 SLLADAKF-----VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTH------------ 404
            L    KF     +W      +  +   +  T  H  C      G T             
Sbjct: 264 GLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSP 323

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           DV     ML    R G +E    L   +  +G R   S   LI   +  + K D A+  +
Sbjct: 324 DVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFE-NAKVDEAISIW 382

Query: 465 H--DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
               ++  C         + Y  L+  L K      A+++LEE        D   +S ++
Sbjct: 383 ELLPEKDCCAD------SMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMI 436

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC---------KYLSN---SNLM 570
                +G    V  +   + ++G +P+ ++   +I  +          ++  N       
Sbjct: 437 NGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCF 496

Query: 571 PDAATKELLKKSLWKEGRRKEAAAV 595
           P   T   L   L K  R  EA A+
Sbjct: 497 PTVVTYNTLINGLSKAERFSEAYAL 521



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 55/139 (39%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           S+ +  L+     +G L   LS   E       L T +Y+ +++   + G+  E      
Sbjct: 394 SMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLD 453

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           Q+   G  PN      +I   V   KL+ AL  F  +       T   Y  L+ G    E
Sbjct: 454 QMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAE 513

Query: 257 RFDEAKSLLNEMRDDGKFP 275
           RF EA +L+ EM   G  P
Sbjct: 514 RFSEAYALVKEMLHKGWKP 532



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/172 (18%), Positives = 74/172 (43%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T + L   L+K++R  E   L+ ++    +    + +  LM        L++ L+ W + 
Sbjct: 501 TYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQA 560

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
            ++      + +NI++     +GK  +A++ + ++     +PN  T+  ++E    +   
Sbjct: 561 LEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDF 620

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           + A +++  +     +     Y I ++G     R  +A   LN+  D G  P
Sbjct: 621 ERASKIWDHILQYGPQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLP 672


>gi|108711050|gb|ABF98845.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215693326|dbj|BAG88708.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625789|gb|EEE59921.1| hypothetical protein OsJ_12549 [Oryza sativa Japonica Group]
          Length = 554

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 120/296 (40%), Gaps = 44/296 (14%)

Query: 357 SPEVVSLLADAKFVWTTR-LVCKVLRHFKSP-ETAWHFFCWVAYQPGYTHDVYALEKMLT 414
           SPE + +  D   V  T  LV K+L  F +    A+ FF WV  Q GY H   + + M+ 
Sbjct: 115 SPEAIMIAMDCCSVRVTGCLVDKILTRFSNDWVAAFGFFMWVGTQGGYCHCADSYDLMVD 174

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DR----- 468
           IL +    +L+  LI ++   G  +   T+  ++     + +   A+ AFH  DR     
Sbjct: 175 ILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVK 234

Query: 469 ----------TLCGPISKFKLMLLYSSLLRTLTKCKRDF--------------DAINVLE 504
                     TLC   S  +   ++  L  T+   +  F              +A++ +E
Sbjct: 235 DTKAMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKARMLKEALDTME 294

Query: 505 EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY- 563
           EM   G  P V T++ L+  + ++ D + V  L   +R+    P+   + +L+ A  K  
Sbjct: 295 EMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAG 354

Query: 564 -----------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
                      L    + PDA+    L   L + GR ++A +V E        P++
Sbjct: 355 RTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNV 410



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 77/175 (44%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           ++++ + L     K++   E    + ++    F    V + +L++ Y    D + V +  
Sbjct: 269 DENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALL 328

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           +E R+R    +  +Y I+M    K G+  EA++TF ++ ++G  P++  Y  +I  L   
Sbjct: 329 DEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRA 388

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           G+L+ A  V   +    I      +  L+       + + A  LL +M +    P
Sbjct: 389 GRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNP 443



 Score = 46.6 bits (109), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 12/124 (9%)

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
            Y+SL+  L +  R  DA +V+EEM  +GI P+V TF+ L+         +   KL   +
Sbjct: 377 FYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKM 436

Query: 542 RQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRR 589
            +    PD   +  L++  CK            ++   ++ PD +T  LL   L + G+ 
Sbjct: 437 EEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKV 496

Query: 590 KEAA 593
            ++ 
Sbjct: 497 AQSC 500



 Score = 43.1 bits (100), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 42/91 (46%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y+ L+  L K  R  +A++  +++   G+ PD   ++ L+Y     G  +    +  
Sbjct: 340 VVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVE 399

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM 570
            +R  G+ P+   F  LI A C +    N +
Sbjct: 400 EMRTTGIAPNVTTFNTLISAACDHSQAENAL 430


>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 113/566 (19%), Positives = 221/566 (39%), Gaps = 90/566 (15%)

Query: 25  VRAPFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHAL------RS 78
           VRA +T  L  Y R  +   +I +  R N S           L P +VT+ +      + 
Sbjct: 222 VRA-YTTILHAYSRTGKYHRAIEIFERMNESG----------LSPSLVTYNVMLDVYGKM 270

Query: 79  APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV 138
             + D  L +++ ++S      ++ T   + +   +     E +     + S  +   +V
Sbjct: 271 GRSWDKILELLDEMRSR-GLDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEGYKPGTV 329

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
            +  L+  +  +G     LS  +E  +        +YN V++ Y + G + E       +
Sbjct: 330 TYNALLHVFGKAGIFSEALSVLSEMEENNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAM 389

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
             +G +PN+ TYT +I     +G +D ALE+F  +  +        Y  ++ G +G +  
Sbjct: 390 ASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELGCVPNVATYNAVL-GMLGKKSL 448

Query: 259 -DEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREML-----PDKRIKNV 311
            +E   +L  M+ +G  P        L    + G  +  N+  REM      PD+   N 
Sbjct: 449 SEEMMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNT 508

Query: 312 ---RYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTL---DEWSPEVVSLLA 365
               Y   GS++D  +  +    ++  +   +  +    AL N L    +W     S++ 
Sbjct: 509 LISAYGRCGSNNDAAKMHEEM--IKAGFSPCINTY---NALLNALARRGDWK-AAESVIL 562

Query: 366 DAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELV 425
           D +            + F+  ET++                     M+   A+ G+V+ +
Sbjct: 563 DMRN-----------KGFRPSETSYSL-------------------MVHSYAKGGNVKGI 592

Query: 426 DRLIAKLRSDGMRLP-FSTIRLII-------DFYGISKKADAALK-AFHDDRTLCGPISK 476
           + +I K   DG   P +  +R ++          G+ +   A  K  +  D  LC     
Sbjct: 593 E-MIEKSIYDGDIFPSWMLLRTLVLANFKCRSLTGMERAFQALQKHGYKPDLVLC----- 646

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
                  +S+L    K      A  +L  +  +G+ PD+ T + LM  +A  GD    ++
Sbjct: 647 -------NSMLSIFAKNNMYDRAHEMLRLIHDAGLQPDLVTHNSLMDMYARGGDCWKAEE 699

Query: 537 LFSMVRQNGVEPDAYMFKVLIQAYCK 562
           +  M++ +G +PD   +  +I+ +C+
Sbjct: 700 VLRMLQTSGGKPDLVSYNTVIKGFCR 725



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 6/165 (3%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           D     +++    R G  E    +I  + S G+     T   II+ YG     D AL+ F
Sbjct: 362 DAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMF 421

Query: 465 HDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
                L C P      +  Y+++L  L K     + + +L  M  +G  P+  T++ ++ 
Sbjct: 422 DQMMELGCVPN-----VATYNAVLGMLGKKSLSEEMMKILGHMKLNGCSPNHITWNTMLA 476

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSN 568
               +G  K V ++F  ++  G EPD   F  LI AY +  SN++
Sbjct: 477 MCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYGRCGSNND 521



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 13/189 (6%)

Query: 106 HALATVLAKSQ---RNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL---ELVLST 159
           +++ ++ AK+    R HE+  LI D      L   V   +LM  Y+  GD    E VL  
Sbjct: 647 NSMLSIFAKNNMYDRAHEMLRLIHDAGLQPDL---VTHNSLMDMYARGGDCWKAEEVLRM 703

Query: 160 WNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219
                 +  L+S   YN V+  + + G   E +    ++   G  P   TY   I     
Sbjct: 704 LQTSGGKPDLVS---YNTVIKGFCRKGLMQEGIRILSEMTSIGVGPCIFTYNTFISGYAA 760

Query: 220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD-DGKFPGRA 278
            G      +V S + +   +     Y I+ +G+    R+DEA   +++++D D  F  ++
Sbjct: 761 QGMFTEINDVISYMIVHNCRPNELTYKIVADGYCKARRYDEAIDFVSKIKDVDDTFGDQS 820

Query: 279 MRVALERMQ 287
           +R  + R++
Sbjct: 821 VRRLVSRVR 829



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 34/165 (20%), Positives = 73/165 (44%), Gaps = 10/165 (6%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY---GISKKA 457
           GY  D+     ML+I A++   +    ++  +   G++    T   ++D Y   G   KA
Sbjct: 638 GYKPDLVLCNSMLSIFAKNNMYDRAHEMLRLIHDAGLQPDLVTHNSLMDMYARGGDCWKA 697

Query: 458 DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
           +  L+     +T  G       ++ Y+++++   +     + I +L EM   G+ P + T
Sbjct: 698 EEVLRML---QTSGGKPD----LVSYNTVIKGFCRKGLMQEGIRILSEMTSIGVGPCIFT 750

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           ++  +  +A QG    +  + S +  +   P+   +K++   YCK
Sbjct: 751 YNTFISGYAAQGMFTEINDVISYMIVHNCRPNELTYKIVADGYCK 795



 Score = 42.0 bits (97), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 36/143 (25%)

Query: 169 LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK------ 222
           +L   +Y  ++  Y++TGK   A+E F ++ + G  P+  TY VM++    +G+      
Sbjct: 219 VLDVRAYTTILHAYSRTGKYHRAIEIFERMNESGLSPSLVTYNVMLDVYGKMGRSWDKIL 278

Query: 223 ------------------------------LDSALEVFSALPLMRIKRTSKQYLILVEGF 252
                                         +D A E FS L     K  +  Y  L+  F
Sbjct: 279 ELLDEMRSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEGYKPGTVTYNALLHVF 338

Query: 253 VGVERFDEAKSLLNEMRDDGKFP 275
                F EA S+L+EM ++   P
Sbjct: 339 GKAGIFSEALSVLSEMEENNCPP 361


>gi|199601721|dbj|BAG70980.1| pentatricopeptide (PPR) repeat-containing protein [Musa balbisiana]
          Length = 788

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 102/218 (46%), Gaps = 33/218 (15%)

Query: 367 AKFVWTTRL---------------VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEK 411
           A+  WTTRL               V  VLR  + P+ A HFF WV  + G+ HD     +
Sbjct: 124 ARRPWTTRLQNSIRSLARSFDQSLVLAVLRGARHPDHALHFFRWVE-KTGFRHDPDTYRE 182

Query: 412 MLTILAR-----HGHVELVDRLIAKL--RSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           ++ +LAR     H    L+D +  +L   S+ M   F++   +I+ YG ++    A+K F
Sbjct: 183 IILLLARASMLNHARCILLDDMPDRLVPPSEDM---FAS---LIEGYGCARIPQEAVKIF 236

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
              R L   +   + +  Y ++ + + +  R   A  +   MI  G++P + T++ L++ 
Sbjct: 237 ---RRL-PELGVTRTVRSYDAVFKAILRSGRVAMARRLFNAMIAEGVLPVLSTYNTLLWG 292

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           F L    +  Q+ F+ +++ G+ PD   +  ++  + +
Sbjct: 293 FCLSIKMETAQRFFADMKERGIAPDLVTYNTILNGWAR 330



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 77/163 (47%), Gaps = 1/163 (0%)

Query: 107 ALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR 166
           A+   + +S R    + L   + +   L V   +  L+  +  S  +E     + + ++R
Sbjct: 253 AVFKAILRSGRVAMARRLFNAMIAEGVLPVLSTYNTLLWGFCLSIKMETAQRFFADMKER 312

Query: 167 AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
                  +YN +++ +A+  K  +A + F ++   G  PNS +Y +MI+  V  G++D  
Sbjct: 313 GIAPDLVTYNTILNGWARAKKMDDAEKVFAEMTAAGFAPNSISYNIMIKGYVCSGRVDDG 372

Query: 227 LEVFSALPLMRIKRTSKQYLILVEGFV-GVERFDEAKSLLNEM 268
           L +FS +    ++ + K +  L+ G    V R  EA+  LNEM
Sbjct: 373 LRMFSEMGEKGLRFSEKTFAALMPGLCDDVGRAAEARKALNEM 415



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 91/221 (41%), Gaps = 4/221 (1%)

Query: 56  NSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAK- 114
           NS+ SL   R  D  +V   LR A + D AL     ++    F H+  T   +  +LA+ 
Sbjct: 134 NSIRSLA--RSFDQSLVLAVLRGARHPDHALHFFRWVEKT-GFRHDPDTYREIILLLARA 190

Query: 115 SQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTES 174
           S  NH    L+ D+           F +L++ Y  +   +  +  +    +     +  S
Sbjct: 191 SMLNHARCILLDDMPDRLVPPSEDMFASLIEGYGCARIPQEAVKIFRRLPELGVTRTVRS 250

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           Y+ V     ++G+   A   F  +I EG +P   TY  ++       K+++A   F+ + 
Sbjct: 251 YDAVFKAILRSGRVAMARRLFNAMIAEGVLPVLSTYNTLLWGFCLSIKMETAQRFFADMK 310

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              I      Y  ++ G+   ++ D+A+ +  EM   G  P
Sbjct: 311 ERGIAPDLVTYNTILNGWARAKKMDDAEKVFAEMTAAGFAP 351


>gi|255584056|ref|XP_002532772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527482|gb|EEF29611.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 647

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 108/502 (21%), Positives = 188/502 (37%), Gaps = 38/502 (7%)

Query: 67  LDPFIVTHALRSA---PNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT 123
           L P  V+  LRS       D A+           ++HN     +L  VLA +     +K+
Sbjct: 106 LSPSFVSFILRSTELQTKPDVAIRFFTWAGKQKKYTHNLECYVSLIDVLATNGVLDSVKS 165

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           +         +    +  +L++ +   G +E VL  W   ++     S  SYN +++   
Sbjct: 166 VFSKFKEMGLIMTVYSSNSLIKSFGNLGMVEEVLWVWRRMKENGIEPSLFSYNFLVNGLV 225

Query: 184 KTGKNFEAVETFRQVIDEGAI-PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
            + K  E+ E   +V++ G I P+  TY  MI+    +GK   A E   A+ L  +    
Sbjct: 226 NS-KFIESAERVFEVMENGKIGPDVVTYNTMIKGYCEVGKTRKAFEKLKAMELRNVAPDK 284

Query: 243 KQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMG-FIQGANEFLR 300
             Y+ L++       FD    L +EM + G + P     + +  + + G  ++G   F  
Sbjct: 285 ITYMTLIQACYAEGDFDSCLGLYHEMDEKGLEIPPHVYSLVIGGLCKDGKRVEGYTVF-E 343

Query: 301 EMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEV 360
            M+      NV  Y   +  D +    N     + +    K  L+P       DE +  V
Sbjct: 344 NMISKGCKANVAIYT--ALIDSNAKCGNMGEAMLLFKRMKKEGLEP-------DEVTYGV 394

Query: 361 VSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHG 420
           +              +CK  R  ++ E  +  FC      G   +      ++  L + G
Sbjct: 395 I-----------VNSLCKSGRLDEALE--YMEFC---SGKGVAVNAMFYSSLIDGLGKSG 438

Query: 421 HVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM 480
            V+  +R+  ++   G          +ID      K D AL A      + G     + +
Sbjct: 439 RVDEAERIFYEMVKKGCPPDSYCYNALIDALAKCGKIDEAL-ALSKRMEVDGCD---QTV 494

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
             Y+ L+  L +  R+ +A+ + + MI  GI P    F  L     L G      K+   
Sbjct: 495 YTYTILITGLFREHRNEEALTLWDLMIDKGITPTAAAFRALSTGLCLSGKVARACKILDE 554

Query: 541 VRQNGVEPDAYMFKVLIQAYCK 562
           +   GV P+   F  +I   CK
Sbjct: 555 MAPMGVIPET-AFDDMINILCK 575



 Score = 43.1 bits (100), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 12/123 (9%)

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
           +YS ++  L K  +  +   V E MI  G   +V  ++ L+   A  G+      LF  +
Sbjct: 321 VYSLVIGGLCKDGKRVEGYTVFENMISKGCKANVAIYTALIDSNAKCGNMGEAMLLFKRM 380

Query: 542 RQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRR 589
           ++ G+EPD   + V++ + CK            + S   +  +A     L   L K GR 
Sbjct: 381 KKEGLEPDEVTYGVIVNSLCKSGRLDEALEYMEFCSGKGVAVNAMFYSSLIDGLGKSGRV 440

Query: 590 KEA 592
            EA
Sbjct: 441 DEA 443



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           ++ ++L  +   D AL  ME   S    + N     +L   L KS R  E + +  ++  
Sbjct: 394 VIVNSLCKSGRLDEALEYME-FCSGKGVAVNAMFYSSLIDGLGKSGRVDEAERIFYEMVK 452

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                 S  +  L+   +  G ++  L+            +  +Y I+++   +  +N E
Sbjct: 453 KGCPPDSYCYNALIDALAKCGKIDEALALSKRMEVDGCDQTVYTYTILITGLFREHRNEE 512

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL-PLMRIKRTSKQYLILV 249
           A+  +  +ID+G  P +  +  +   L   GK+  A ++   + P+  I  T+   +I +
Sbjct: 513 ALTLWDLMIDKGITPTAAAFRALSTGLCLSGKVARACKILDEMAPMGVIPETAFDDMINI 572

Query: 250 EGFVGVERFDEAKSLLNEMRDDGK-FPGRAMRVALERMQEMG 290
               G  R  EA  L + + D G+  PGR   V +  +++ G
Sbjct: 573 LCKAG--RIKEACKLADGIVDRGREIPGRVRTVLINALRKAG 612


>gi|297821162|ref|XP_002878464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324302|gb|EFH54723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 628

 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 124/305 (40%), Gaps = 55/305 (18%)

Query: 327 DNNSGVRIAYGVQ-LKPWLDPKAL---ANTLDEW---SPEVVSLLADAKFVWTTRLVCKV 379
           DN+  V I  GV  +    +P+ +      +DE       + ++L + K   +  L+ KV
Sbjct: 117 DNDDDVGIEIGVSCVDSSTNPEEVERVCKVIDELFALDRNMEAVLDEMKVELSHDLIVKV 176

Query: 380 L---RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
           L   RH + P  A+ FFCW A + G+ HD      M++ILA+    E +  ++ ++ + G
Sbjct: 177 LERFRHARKP--AFRFFCWAAEKQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKG 234

Query: 437 MRLPFSTIRLIIDFYGISKKADAALKAF------------HDDRTLCGPISKFKL----- 479
           + L   T  + +  +  +K+   A+  F                 L   + + KL     
Sbjct: 235 L-LTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQ 293

Query: 480 -------------MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
                        M+ Y+ LL    + +   +A  +  +MI  G+ PD+   + ++    
Sbjct: 294 VLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLL 353

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLS------------NSNLMPDAA 574
               +    KLF +++  G  P+   + ++I+ +CK  S            +S L PDAA
Sbjct: 354 RSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAA 413

Query: 575 TKELL 579
               L
Sbjct: 414 VYTCL 418



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 101/237 (42%), Gaps = 3/237 (1%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I   A  +A     A+ I E +K    F     T++ L   L +++   E + L  D   
Sbjct: 243 IAMKAFAAAKERKKAVGIFELMKKY-KFKIGVETINCLLDSLGRAKLGKEAQVLF-DKLK 300

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
            +F    + +  L+  +    +L      WN+   +       ++N+++    ++ K  +
Sbjct: 301 ERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSD 360

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A++ F  +  +G  PN R+YT+MI        +++A+E F  +    ++  +  Y  L+ 
Sbjct: 361 AIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLIT 420

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREMLPDK 306
           GF   ++ D    LL EM++ G  P G+     ++ M      + A     +M+ ++
Sbjct: 421 GFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNE 477



 Score = 46.2 bits (108), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 9/123 (7%)

Query: 454 SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP 513
           S+K   A+K FH  ++  GP    +    Y+ ++R   K      AI   ++M+ SG+ P
Sbjct: 355 SRKKSDAIKLFHVMKSK-GPCPNVRS---YTIMIRDFCKQSSMETAIEYFDDMVDSGLQP 410

Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDA 573
           D   ++ L+  F  Q     V +L   +++ G  PD   +  LI    K ++N   MP+ 
Sbjct: 411 DAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALI----KLMANQK-MPEH 465

Query: 574 ATK 576
           AT+
Sbjct: 466 ATR 468



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 54/102 (52%), Gaps = 2/102 (1%)

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
           +Y+ L+      K+      +L+EM   G  PD +T++ L+   A Q   +   ++++ +
Sbjct: 414 VYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKM 473

Query: 542 RQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSL 583
            QN +EP  + F +++++Y  +++ +  M  A   E++KK +
Sbjct: 474 IQNEIEPSIHTFNMIMKSY--FMARNYEMGSAVWDEMIKKGI 513


>gi|449455399|ref|XP_004145440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Cucumis sativus]
          Length = 576

 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 106/232 (45%), Gaps = 26/232 (11%)

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD--AA 460
           T D YAL  +L    + G +E  + + A++R  G+          ID  G+ K  +   A
Sbjct: 189 TEDTYAL--LLKAYCKSGLLEKAEAVFAEMRKYGLSPSAIVYNAYID--GLVKGGNNVKA 244

Query: 461 LKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           ++ FH   R  C P +       Y+ L+    K  +   A N+ +EM      P++ TF+
Sbjct: 245 VEIFHRMKRDGCQPTTD-----TYTMLINVYGKESKSHMAQNIFDEMRTQRCKPNICTFT 299

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNS 567
            L+   A +G  +  +++F  +++ G EPD Y +  L+++Y +             + + 
Sbjct: 300 ALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHM 359

Query: 568 NLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAVSS 619
              PD A+  ++  +  + G  ++A AV E  ++I   P+  ++ H+  +S+
Sbjct: 360 GCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPT--MKSHMLLLSA 409



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 6/175 (3%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L++ Y  SG LE   + + E R+     S   YN  +    K G N +AVE F ++  +G
Sbjct: 196 LLKAYCKSGLLEKAEAVFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIFHRMKRDG 255

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P + TYT++I       K   A  +F  +   R K     +  LV         ++A+
Sbjct: 256 CQPTTDTYTMLINVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAE 315

Query: 263 SLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREML-----PDKRIKNV 311
            +  +M++ G  P   A    +E     GF  GA E    M      PD+   N+
Sbjct: 316 EIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNI 370



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/201 (18%), Positives = 78/201 (38%), Gaps = 1/201 (0%)

Query: 75  ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFL 134
            L    N   A+ I   +K +        T   L  V  K  ++H  + +  ++ + +  
Sbjct: 234 GLVKGGNNVKAVEIFHRMKRD-GCQPTTDTYTMLINVYGKESKSHMAQNIFDEMRTQRCK 292

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
                F  L+   +  G  E     + + ++        +YN +M  Y++ G  + A E 
Sbjct: 293 PNICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEI 352

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
           F  +   G  P+  +Y +M++     G  + A  VF  +  + I  T K +++L+  +  
Sbjct: 353 FSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSS 412

Query: 255 VERFDEAKSLLNEMRDDGKFP 275
                + + ++ +M   G  P
Sbjct: 413 AGNVAKCEDIIGQMHKSGLKP 433



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 72/355 (20%), Positives = 131/355 (36%), Gaps = 56/355 (15%)

Query: 241 TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLR 300
           T   Y +L++ +      ++A+++  EMR  G  P   +  A       G ++G N    
Sbjct: 189 TEDTYALLLKAYCKSGLLEKAEAVFAEMRKYGLSPSAIVYNAYID----GLVKGGNN--- 241

Query: 301 EMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDE----- 355
                  +K V  +     D      D  + +   YG + K  +      N  DE     
Sbjct: 242 -------VKAVEIFHRMKRDGCQPTTDTYTMLINVYGKESKSHM----AQNIFDEMRTQR 290

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
             P + +  A    +    L  K    F+  + A           GY  DVYA   ++  
Sbjct: 291 CKPNICTFTALVNALAREGLCEKAEEIFEQMQEA-----------GYEPDVYAYNALMES 339

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPI 474
            +R G       + + ++  G     ++  +++D YG +   + A   F +  R    P 
Sbjct: 340 YSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPT 399

Query: 475 SKFKLMLL--YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
            K  ++LL  YSS    + KC+      +++ +M  SG+ PD    + ++  +   G   
Sbjct: 400 MKSHMLLLSAYSSA-GNVAKCE------DIIGQMHKSGLKPDTFVMNSMLNLYGRLGQFG 452

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAAT 575
            ++ LFS +++     D   + +LI  Y +             L   NL PD  T
Sbjct: 453 KMEDLFSTMQKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNLEPDVVT 507



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 70/161 (43%), Gaps = 1/161 (0%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           LM  Y      + V ST+ E  +   + + ++Y +++  Y K+G   +A   F ++   G
Sbjct: 161 LMDAYGQRSLYKDVESTYLELLESHCIPTEDTYALLLKAYCKSGLLEKAEAVFAEMRKYG 220

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P++  Y   I+ LV  G    A+E+F  +     + T+  Y +L+  +    +   A+
Sbjct: 221 LSPSAIVYNAYIDGLVKGGNNVKAVEIFHRMKRDGCQPTTDTYTMLINVYGKESKSHMAQ 280

Query: 263 SLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREM 302
           ++ +EMR     P      AL   +   G  + A E   +M
Sbjct: 281 NIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQM 321


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 96/475 (20%), Positives = 184/475 (38%), Gaps = 44/475 (9%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
             S N  TL+ L     + QR     +++            V F  L+      G     
Sbjct: 5   GLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQA 64

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           +  +++   R       +Y  +++   K G+   A   F+++ + G   N  TY+ +I  
Sbjct: 65  VELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHS 124

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
           L    +++ AL++FS +    I  T   Y  L++G     R+ EA +LLNEM      P 
Sbjct: 125 LCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPN 184

Query: 277 -RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIA 335
                V ++   + G +  A   L+ M       +V  Y                   + 
Sbjct: 185 VVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNS-----------------LM 227

Query: 336 YGVQLKPW---LDPKALANTL--DEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW 390
           YG  +  W   ++ + L + +      P+V S      +       CK     K  + A 
Sbjct: 228 YGYSM--WTEVVEARKLFDVMITKGCKPDVFS------YSILINGYCKA----KRIDEAK 275

Query: 391 HFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF 450
             F  + +Q G T +  +   ++  L + G +     L   + ++G      T  +++D 
Sbjct: 276 QLFNEMIHQ-GSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLD- 333

Query: 451 YGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSG 510
            G  K+     KAF   R +     K  L ++Y+ L+  + K     DA  +  E+   G
Sbjct: 334 -GFCKQGYLG-KAFRLFRAMQSTYLKPNL-VMYNILVNAMCKSGNLKDARELFSELFVIG 390

Query: 511 IVPDVQTFSGLMYHFALQG--DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY 563
           + P+VQ ++ ++     +G  DE +  + F  +  +G  PD + + V+I+ + ++
Sbjct: 391 LQPNVQIYTTIINGLCKEGLLDEAL--EAFRNMEDDGCPPDEFSYNVIIRGFLQH 443



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 12/138 (8%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           ++ L+ T  K  +   A  VL+ M   G+ PDV T++ LMY +++  +    +KLF ++ 
Sbjct: 188 FNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMI 247

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
             G +PD + + +LI  YCK             + +    P+  +   L   L + GR +
Sbjct: 248 TKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLR 307

Query: 591 EAAAVEERCEKINDVPSL 608
           EA  + +      ++P+L
Sbjct: 308 EAQDLFKNMHTNGNLPNL 325



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 48/98 (48%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YNI+++   K+G   +A E F ++   G  PN + YT +I  L   G LD ALE F  + 
Sbjct: 363 YNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNME 422

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
                     Y +++ GF+  +    A  L+ EMRD G
Sbjct: 423 DDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRG 460



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS L+    K KR  +A  +  EMI  G  P+  +++ L++     G  +  Q LF  + 
Sbjct: 258 YSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMH 317

Query: 543 QNGVEPDAYMFKVLIQAYCK--YLS----------NSNLMPDAATKELLKKSLWKEGRRK 590
            NG  P+ Y + +L+  +CK  YL           ++ L P+     +L  ++ K G  K
Sbjct: 318 TNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLK 377

Query: 591 EA 592
           +A
Sbjct: 378 DA 379



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 73/185 (39%), Gaps = 4/185 (2%)

Query: 113 AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
            K++R  E K L  ++        +V++  L+      G L      +        L + 
Sbjct: 266 CKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNL 325

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            +Y I++  + K G   +A   FR +      PN   Y +++  +   G L  A E+FS 
Sbjct: 326 YTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSE 385

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFI 292
           L ++ ++   + Y  ++ G       DEA      M DDG  P       + R    GF+
Sbjct: 386 LFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIR----GFL 441

Query: 293 QGANE 297
           Q  +E
Sbjct: 442 QHKDE 446



 Score = 42.4 bits (98), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 84/208 (40%), Gaps = 18/208 (8%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G + +   L  ++    +   V+L   ++AK    G++    T   +I+  G   K   A
Sbjct: 5   GLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQA 64

Query: 461 LKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           ++ F D     C P         Y++++  L K      A  + ++M  +G   +V T+S
Sbjct: 65  VELFDDMVARGCQPDD-----YTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYS 119

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNS 567
            L++             +FS ++   + P  + +  LIQ  C +            +++ 
Sbjct: 120 TLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSL 179

Query: 568 NLMPDAATKELLKKSLWKEGRRKEAAAV 595
           N+MP+  T  +L  +  KEG+   A  V
Sbjct: 180 NIMPNVVTFNVLVDTFCKEGKVLAAEGV 207


>gi|255661008|gb|ACU25673.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 369

 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 98/217 (45%), Gaps = 22/217 (10%)

Query: 397 AYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI--RLIIDFYGIS 454
           A + G   D +A   M+  L +   +E    ++  +   G + P + +   LI    G S
Sbjct: 120 AERKGGVLDAFAYSAMINGLCKETKLEKAISVLNGMIKSGCK-PNTHVYNALINGLIGAS 178

Query: 455 KKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP 513
           K  DA ++ F +   T C P      ++ Y+ L+  L K +R  +A ++++EM+  G+ P
Sbjct: 179 KSEDA-IRVFREMGITHCSPT-----IVTYNILINGLCKSERFGEAYDLVKEMLEKGLTP 232

Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK----------Y 563
            V T+S LM    L    ++  +L++ V +NG +PD  M   LI   C           Y
Sbjct: 233 SVITYSLLMKGLCLGHKIEMALQLWNQVTKNGFKPDVQMHNTLIHGLCSVGKTQLALSLY 292

Query: 564 LSNS--NLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
           L  +  N  P+  T+  L +  +K+G  + A  +  R
Sbjct: 293 LDMNYWNCAPNLVTQNTLMEGFYKDGDMRNALVIWAR 329



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 72/164 (43%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L  + R  E+ ++   +    ++  S+ +  L+  +  +G +   L       ++  +L 
Sbjct: 69  LFDNGRVDEVNSIWELMKKGGYVEDSITYGILVHGFCKNGYINKSLRVLETAERKGGVLD 128

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
             +Y+ +++   K  K  +A+     +I  G  PN+  Y  +I  L+   K + A+ VF 
Sbjct: 129 AFAYSAMINGLCKETKLEKAISVLNGMIKSGCKPNTHVYNALINGLIGASKSEDAIRVFR 188

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            + +     T   Y IL+ G    ERF EA  L+ EM + G  P
Sbjct: 189 EMGITHCSPTIVTYNILINGLCKSERFGEAYDLVKEMLEKGLTP 232



 Score = 43.1 bits (100), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 27/129 (20%), Positives = 59/129 (45%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           F  +M+    +G ++ V S W   ++   +  + +Y I++  + K G   +++       
Sbjct: 62  FNIMMRGLFDNGRVDEVNSIWELMKKGGYVEDSITYGILVHGFCKNGYINKSLRVLETAE 121

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
            +G + ++  Y+ MI  L    KL+ A+ V + +     K  +  Y  L+ G +G  + +
Sbjct: 122 RKGGVLDAFAYSAMINGLCKETKLEKAISVLNGMIKSGCKPNTHVYNALINGLIGASKSE 181

Query: 260 EAKSLLNEM 268
           +A  +  EM
Sbjct: 182 DAIRVFREM 190


>gi|413942671|gb|AFW75320.1| hypothetical protein ZEAMMB73_530230 [Zea mays]
          Length = 542

 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 12/119 (10%)

Query: 486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
           LL+ L        A+ VL+EMI  GIVPDV T++ ++  +  +GD +  Q+LF  +  +G
Sbjct: 206 LLKGLVGIGDLNSALKVLDEMIGWGIVPDVVTYTTVLTAYCAKGDLEGAQQLFDDIIASG 265

Query: 546 VEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
             PDA M+ VLI  YC +            +  + + P+  T  ++ ++  KE +  EA
Sbjct: 266 RRPDATMYTVLIDGYCHHRKLQDAARIMDEMGAAGVQPNEVTYSVVIEACCKERKSTEA 324



 Score = 43.5 bits (101), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 1/131 (0%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           S NI++      G    A++   ++I  G +P+  TYT ++      G L+ A ++F  +
Sbjct: 202 SCNILLKGLVGIGDLNSALKVLDEMIGWGIVPDVVTYTTVLTAYCAKGDLEGAQQLFDDI 261

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFI 292
                +  +  Y +L++G+    +  +A  +++EM   G  P      V +E   +    
Sbjct: 262 IASGRRPDATMYTVLIDGYCHHRKLQDAARIMDEMGAAGVQPNEVTYSVVIEACCKERKS 321

Query: 293 QGANEFLREML 303
             A +  REML
Sbjct: 322 TEARDLTREML 332



 Score = 40.4 bits (93), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 3/95 (3%)

Query: 192 VETFRQVIDE---GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
           V+  R++ DE   G +P+  TY  +I  L   G+L  A  V+  +   R +  +  Y  L
Sbjct: 391 VQEARKLFDELERGFLPSLLTYNSLIIGLCENGELQEAGRVWDDMVERRYEPNAMTYEAL 450

Query: 249 VEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
           ++GF  + + +E  +L  EM   G  P + +  AL
Sbjct: 451 IKGFCKIGKSNEGYALFKEMMSRGCTPSKFLYQAL 485



 Score = 40.0 bits (92), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 4/162 (2%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   DV     +LT     G +E   +L   + + G R   +   ++ID Y   +K   A
Sbjct: 230 GIVPDVVTYTTVLTAYCAKGDLEGAQQLFDDIIASGRRPDATMYTVLIDGYCHHRKLQDA 289

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
            +   +     G        + YS ++    K ++  +A ++  EM+ +G VPD    + 
Sbjct: 290 ARIMDE----MGAAGVQPNEVTYSVVIEACCKERKSTEARDLTREMLGAGYVPDTPLCAK 345

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           ++      G      +++  + +  V PD  +   LI   CK
Sbjct: 346 VVDVLCQDGKAGEANEMWRQMVKKSVPPDNTVVSTLIYWLCK 387


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 91/437 (20%), Positives = 177/437 (40%), Gaps = 49/437 (11%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YN +++ Y + G    A+ T  Q+   G  PN   +  +I+    +  +D A E    + 
Sbjct: 280 YNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMV 339

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQ 293
              I  + + Y IL++G+  +  F     +L EM ++G+ P      +L   + + G I 
Sbjct: 340 GKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKIL 399

Query: 294 GANEFLREMLPDKRIKNVRYYE---DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALA 350
            A   LR+M+    + N   Y    DGS                  G +L+  L      
Sbjct: 400 EAEMVLRDMVGRGVLPNANIYNMLIDGS---------------CTVG-KLREAL------ 437

Query: 351 NTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
              DE S   +     A  V    L+  + +  K  E    FF  +    G+  DV    
Sbjct: 438 RFFDEMSKNGIG----ATIVTYNSLIKGLCKMGKLKEAEEMFF--LITSTGHCPDVITYN 491

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470
            +++  +  G+ +    L   ++  G++   +T   +I   G SK+    LK    +  L
Sbjct: 492 SLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLIS--GCSKEG-IKLKETLFNEML 548

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
              +S  ++  +Y++++    +      A ++ +EM+  G+ PD +T++ L+     +G 
Sbjct: 549 QMNLSPDRV--VYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGK 606

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKEL 578
               + L   ++  G+ P+A  + +LIQ +C            + +  +  +P+      
Sbjct: 607 LSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLENGFLPNVCICNE 666

Query: 579 LKKSLWKEGRRKEAAAV 595
           L   L K+GR +EA ++
Sbjct: 667 LSTGLRKDGRLQEAQSI 683



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 83/495 (16%), Positives = 189/495 (38%), Gaps = 89/495 (17%)

Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
           GDL+L +  +   ++R  + +   YN+++    K  +  +A + F ++     +PN  T+
Sbjct: 80  GDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTF 139

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
             +I+     G++D A+ +   +   +++ +   +  L+ G     R +EA+ +LNE++ 
Sbjct: 140 NTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKC 199

Query: 271 DGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNS 330
           +G  P                    + F   ++ D  +K        SDD          
Sbjct: 200 NGFVP--------------------DGFTYSIIFDGLLK--------SDD---------- 221

Query: 331 GVRIAYGVQLKPWLDPKALANTLDEWSPEVV--SLLADAKFVWTTRLVCKVLRHFKSP-- 386
                 G  L  + +       +D ++  ++   L  + K      ++  ++ H   P  
Sbjct: 222 ----GAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGE 277

Query: 387 ---ETAWHFFCWVAYQPGYTHDVYALEKMLT------------ILARHGHVELVDRL--- 428
               T  + +C +         +  +E+M +            ++ +   ++++D+    
Sbjct: 278 VIYNTIVNGYCQIG---DMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEW 334

Query: 429 IAKLRSDGMRLPFSTIRLIIDFYG---ISKKADAALKAFHDDRTLCGPISKFKLMLLYSS 485
           + K+   G+     T  ++ID YG   +  +    L+   ++      IS       Y S
Sbjct: 335 VKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVIS-------YGS 387

Query: 486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
           L+  L K  +  +A  VL +M+  G++P+   ++ L+      G  +   + F  + +NG
Sbjct: 388 LINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNG 447

Query: 546 VEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
           +      +  LI+  CK             ++++   PD  T   L       G  ++  
Sbjct: 448 IGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCL 507

Query: 594 AVEERCEKINDVPSL 608
            + E  +K+   P++
Sbjct: 508 ELYETMKKLGLKPTI 522



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 103/501 (20%), Positives = 213/501 (42%), Gaps = 74/501 (14%)

Query: 85  ALSIMEALKSN---PN-FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNF 140
           A+ + E +K     PN F +N      L   L K +R  + + L G++S    +   V F
Sbjct: 85  AMELFETMKRRKVVPNVFVYN-----VLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTF 139

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
             L+  Y  +G++++ +      ++     S  ++N ++S   K  +  EA     ++  
Sbjct: 140 NTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKC 199

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLD----SALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
            G +P+  TY+++ + L+   K D    +AL+++       +K  +    IL+ G     
Sbjct: 200 NGFVPDGFTYSIIFDGLL---KSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEG 256

Query: 257 RFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
           + ++A+ +L  + + G  PG  +   +      G+ Q     + +M  D+ I  +   E 
Sbjct: 257 KVEKAEEVLKSLVEHGLVPGEVIYNTIVN----GYCQ-----IGDM--DRAILTIEQME- 304

Query: 317 GSDDDEDENDDNNSGVR---IAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTT 373
                       + G+R   IA+   +  + + + + +  +EW  ++V     A  V T 
Sbjct: 305 ------------SRGLRPNCIAFNSVIDKFCEMQ-MIDKAEEWVKKMVG-KGIAPSVETY 350

Query: 374 RL-------VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVD 426
            +       +C   R F+  E           + G   +V +   ++  L + G +   +
Sbjct: 351 NILIDGYGRLCVFSRCFQILEEME--------ENGEKPNVISYGSLINCLCKDGKILEAE 402

Query: 427 RLIAKLRSDGMRLPFSTI-RLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSS 485
            ++  +   G+ LP + I  ++ID      K   AL+ F D+ +  G  +    ++ Y+S
Sbjct: 403 MVLRDMVGRGV-LPNANIYNMLIDGSCTVGKLREALR-FFDEMSKNGIGAT---IVTYNS 457

Query: 486 LLRTLTKCKRDFDAINVLEEMIF----SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
           L++ L K  +  +A    EEM F    +G  PDV T++ L+  ++  G+ +   +L+  +
Sbjct: 458 LIKGLCKMGKLKEA----EEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETM 513

Query: 542 RQNGVEPDAYMFKVLIQAYCK 562
           ++ G++P    F  LI    K
Sbjct: 514 KKLGLKPTINTFHPLISGCSK 534



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 94/232 (40%), Gaps = 8/232 (3%)

Query: 85  ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
              I+E ++ N     N  +  +L   L K  +  E + ++ D+     L  +  +  L+
Sbjct: 366 CFQILEEMEENGE-KPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLI 424

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204
               T G L   L  ++E  +     +  +YN ++    K GK  EA E F  +   G  
Sbjct: 425 DGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHC 484

Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL 264
           P+  TY  +I    N G     LE++  +  + +K T   +  L+ G    E     ++L
Sbjct: 485 PDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISG-CSKEGIKLKETL 543

Query: 265 LNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREML-----PDKRIKN 310
            NEM      P R +  A+    QE G +Q A    +EM+     PD +  N
Sbjct: 544 FNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYN 595



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 12/135 (8%)

Query: 486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
           ++ +L + K+  + +++ +EM+  G  PD   +   M      GD K+  +LF  +++  
Sbjct: 37  IVESLVESKKFDNVLDLFKEMVGLGFRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRK 96

Query: 546 VEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
           V P+ +++ VLI   CK             +S  NL+P+  T   L     K G    A 
Sbjct: 97  VVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAI 156

Query: 594 AVEERCEKINDVPSL 608
            + ER +K    PS+
Sbjct: 157 GLRERMKKEKVEPSI 171



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 83/181 (45%), Gaps = 3/181 (1%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           F  L+   S  G ++L  + +NE  Q         YN ++  Y +TG   +A    ++++
Sbjct: 525 FHPLISGCSKEG-IKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMV 583

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           D G  P+++TY  +I   +  GKL    ++   +    +   +  Y +L++G   ++ F+
Sbjct: 584 DMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFN 643

Query: 260 EAKSLLNEMRDDGKFPGRAMRVALER-MQEMGFIQGANEFLREMLPDKRIKNVRYYEDGS 318
            A     EM ++G  P   +   L   +++ G +Q A     EM+ +  + N+   ED S
Sbjct: 644 GAYVWYREMLENGFLPNVCICNELSTGLRKDGRLQEAQSICSEMIANG-MDNLDTNEDLS 702

Query: 319 D 319
           D
Sbjct: 703 D 703


>gi|356523400|ref|XP_003530328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Glycine max]
          Length = 664

 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 123/592 (20%), Positives = 220/592 (37%), Gaps = 90/592 (15%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDP----------FIVTHALRSAPNADSALSIMEA 91
           L D   L ++    +SL  +L  R L+P            V HALR  PN   AL   + 
Sbjct: 3   LKDGYSLLLKHRKPSSLPLVLATRPLNPPPSSASLLHESHVAHALRREPNVLYALQHFQY 62

Query: 92  LKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV---NFMNLMQWYS 148
           L +   F H   T H +   + K  RN EL  L   +   K   +     +F+ ++  Y 
Sbjct: 63  LTNTLAFKHTPLTYHVM---IEKLGRNSELDALHYILHQMKIERIPCSQDSFICVLNSYK 119

Query: 149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVM-SVYAKTGKNFEAV-ETFRQVIDEGAIPN 206
            SG  +  L  +   ++     + + YN ++ ++  ++G  F  +   +  +  EG  PN
Sbjct: 120 NSGLGDRALKMFYRIKEFGCKPTVKIYNHLLDALLGESGNKFHMIGAVYENMRGEGMEPN 179

Query: 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
             TY V+++ L   GKLD A ++   +           Y  +V       R +EA+ +  
Sbjct: 180 VFTYNVLLKALCKNGKLDGACKLLVEMSKRGCVPDGVSYTTVVAAMCEDGRVEEAREVAR 239

Query: 267 EMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDG----SDDD 321
               +G      A+   L R   +G + G    + EM+ +    NV  Y       SD  
Sbjct: 240 RFGAEGVVSVCNALICGLCREGRVGEVFG---LMDEMVGNGVDPNVVSYSSVISWLSDVG 296

Query: 322 EDENDDNNSGVRIAYGVQ---------LKPWLDPKALANTLDEWSPEVVSLLADAKFVWT 372
           E E      G  I  G +         +K +     +   +  W   V+  +     V+ 
Sbjct: 297 EVELALAVLGKMIRRGCRPNVHTFSSLMKGYFLGGRVGEGVGLWRVMVLEGVRPNVVVYN 356

Query: 373 TRL--VCKVLRHFKSPETAWHF----FCWVAYQPGYTHDVYALEKMLTILARHGHVELVD 426
           T L  +C      ++ +         FC    +P    +V     ++    + G ++   
Sbjct: 357 TLLNGLCCSGNLAEAVDVCGRMEKDCFC----RP----NVTTYSTLVHGFVKAGDLQGAS 408

Query: 427 RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRT-LCGPISKFKLMLLYSS 485
            +  K+ + G+R        ++D    +   D A +   +  T  C P      ++ +++
Sbjct: 409 EVWNKMVNCGVRPNVVVYTSMVDVLCKNSMFDQAYRLIDNMATDGCPPT-----VVTFNT 463

Query: 486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL------------------------ 521
            ++ L    R   A+ V+++M   G +PD +T++ L                        
Sbjct: 464 FIKGLCCGGRVLWAMRVVDQMQRYGCLPDTRTYNELLDGLFSVNELKEACELIRELEERK 523

Query: 522 -----------MYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
                      MY F+  G E+ V ++   +  NGV+PDA    V+I AY K
Sbjct: 524 VELNLVTYNTVMYGFSSHGKEEWVLQVLGRMLVNGVKPDAITVNVVIYAYSK 575


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 87/195 (44%), Gaps = 1/195 (0%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L K  + +E + L G+I         V+F  L+  Y  SG+L+          +      
Sbjct: 235 LCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPD 294

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
             +Y+++++   K G+  +A + F ++ D G +PN  T+T +I      G+ D  +E++ 
Sbjct: 295 VFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQ 354

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMG 290
            +    +K     Y  L+ G   V    EAK L+ EM   G  P +    + ++   + G
Sbjct: 355 QMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEG 414

Query: 291 FIQGANEFLREMLPD 305
            ++ A E  +EM+ +
Sbjct: 415 DLESALEIRKEMVKE 429



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 80/178 (44%), Gaps = 1/178 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F  L+  +  +G  +L +  + +  ++       +YN +++   K G   EA +   +
Sbjct: 331 VTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIE 390

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G  P+  TYT++I+     G L+SALE+   +    I+  +  +  L+ GF    +
Sbjct: 391 MTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQ 450

Query: 258 FDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
             EA+  L EM + G  P  A   + +    + G ++   + L+EM  D  +  V  Y
Sbjct: 451 VIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTY 508



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 89/223 (39%), Gaps = 21/223 (9%)

Query: 389 AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII 448
           AW F+  +    GY  DV     ++  L +   +     L  ++   G+R    +   +I
Sbjct: 209 AWAFYEEI-LDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLI 267

Query: 449 DFYGISKKADAA--LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
           + Y  S   D    LK F  +  +      F  +  YS L+  L K  +  DA  +  EM
Sbjct: 268 NGYCKSGNLDQGFRLKRFMMENRV------FPDVFTYSVLINGLCKEGQLDDANKLFLEM 321

Query: 507 IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY--- 563
              G+VP+  TF+ L+    + G   +  +++  + + GV+PD   +  LI   CK    
Sbjct: 322 CDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDL 381

Query: 564 ---------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
                    ++   L PD  T  +L     KEG  + A  + +
Sbjct: 382 REAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRK 424



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 102/271 (37%), Gaps = 31/271 (11%)

Query: 382 HFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS-DGMRLP 440
           H  SP +   FF W++ Q  +   +++   M   L  H  +     L+  + S  G    
Sbjct: 79  HSLSPPSLLSFFKWLSTQHHFRLSIHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGKNSA 138

Query: 441 FSTIRLIIDFYGISKKA---DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDF 497
            S    +++  G  +        + A+ D       I  F+L+  + +L      C   F
Sbjct: 139 SSVFTSVLEARGTHQSNLVFSVLMNAYTDSGYFSDAIQCFRLVRKH-NLQIPFHSCGYLF 197

Query: 498 DAINVL----------EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE 547
           D +  L          EE++  G  PDV  F+ LM+    +      Q LF  + + G+ 
Sbjct: 198 DRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLR 257

Query: 548 PDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
           P    F  LI  YCK            ++  + + PD  T  +L   L KEG+  +A  +
Sbjct: 258 PTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKL 317

Query: 596 -EERCEK---INDVPSLALRGHIWAVSSADL 622
             E C++    NDV    L         ADL
Sbjct: 318 FLEMCDRGLVPNDVTFTTLINGHCVTGRADL 348



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 94/208 (45%), Gaps = 26/208 (12%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD-- 458
           G   DV     ++  L + G +    +L+ ++   G++    T  ++ID  G  K+ D  
Sbjct: 360 GVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLID--GCCKEGDLE 417

Query: 459 AALKAFHDDRTLCGPISKFKLML---LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
           +AL+   +       + K  + L    +++L+    +  +  +A   L EM+ +GI PD 
Sbjct: 418 SALEIRKE-------MVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDD 470

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--YLSNSNLM--- 570
            T++ +++ F  +GD K   KL   ++ +G  P    + VL+   CK   + N+N++   
Sbjct: 471 ATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDA 530

Query: 571 -------PDAATKELLKKSLWKEGRRKE 591
                  PD  T  +L +   K G R++
Sbjct: 531 MLNLGVVPDDITYNILLEGHCKHGNRED 558


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 89/192 (46%), Gaps = 1/192 (0%)

Query: 113 AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
            KS+R +E KTL+ ++        +V +  LMQ +  +G  ++    + E      L  +
Sbjct: 362 CKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDS 421

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            +Y+I++    K G   EA    + + +    P+   Y ++I+ + N GKL++A E+FS 
Sbjct: 422 ITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSN 481

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGF 291
           L +  I+ +   Y +++ G +     +EA  +  +M  +G  P      VA++     G 
Sbjct: 482 LFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGD 541

Query: 292 IQGANEFLREML 303
              A   + EM+
Sbjct: 542 PSNAVRLIEEMV 553



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 76/161 (47%), Gaps = 4/161 (2%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G+   +     ++  L + GH     +L+ K+   G +        +ID     ++A+ A
Sbjct: 171 GFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEA 230

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           +  F +      P +    ++ YSS+L       +  +A ++ ++MI   ++P+  TF+ 
Sbjct: 231 MYFFSEMVDQGIPPN----VVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTI 286

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           L+     +G     +++F M+ +NGVEPDAY +  L+  YC
Sbjct: 287 LVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYC 327



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 86/200 (43%), Gaps = 6/200 (3%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L K +R +E      ++         V + +++  +   G L    S + +   R  + +
Sbjct: 221 LCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPN 280

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
           T ++ I++    K G   EA   F  + + G  P++ TY+ +++      ++D A ++F 
Sbjct: 281 TVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFD 340

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMG 290
            +       + + Y IL+ G     R +EAK+LL+EM D    P       L +   + G
Sbjct: 341 IMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAG 400

Query: 291 FIQGANEFLREM-----LPD 305
             Q A +  +EM     LPD
Sbjct: 401 RPQVAQKLFKEMCSYGLLPD 420



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 4/148 (2%)

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
           L + G +    R+   +  +G+     T   ++D Y +  + D A K F D     G   
Sbjct: 291 LCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLF-DIMVGKGFAP 349

Query: 476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ 535
             ++   Y+ L+    K +R  +A  +L EM    + PD  T+S LM  F   G  ++ Q
Sbjct: 350 SVRV---YNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQ 406

Query: 536 KLFSMVRQNGVEPDAYMFKVLIQAYCKY 563
           KLF  +   G+ PD+  + +L+   CK+
Sbjct: 407 KLFKEMCSYGLLPDSITYSILLDGLCKH 434



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 12/123 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS+L++   +  R   A  + +EM   G++PD  T+S L+      G      +L   ++
Sbjct: 389 YSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQ 448

Query: 543 QNGVEPDAYMFKVLIQAYCKY---------LSN---SNLMPDAATKELLKKSLWKEGRRK 590
           ++ +EP   ++ +LIQ  C +          SN     + P   T  ++   L KEG   
Sbjct: 449 ESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSN 508

Query: 591 EAA 593
           EA 
Sbjct: 509 EAC 511



 Score = 45.4 bits (106), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 53/268 (19%), Positives = 108/268 (40%), Gaps = 7/268 (2%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVT-----HALRSAPNADSALSIMEALKSNP 96
           +IDS+    R+N +    S + D+ + P +VT     H   +    + A S+ + +    
Sbjct: 217 VIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGR- 275

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
           N   N  T   L   L K     E + +   ++ +     +  +  LM  Y     ++  
Sbjct: 276 NVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEA 335

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
              ++    +    S   YNI+++ + K+ +  EA     ++ D    P++ TY+ +++ 
Sbjct: 336 QKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQG 395

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
               G+   A ++F  +    +   S  Y IL++G       DEA  LL  M++    P 
Sbjct: 396 FCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPH 455

Query: 277 RAM-RVALERMQEMGFIQGANEFLREML 303
             +  + ++ M   G ++ A E    + 
Sbjct: 456 ICIYNILIQGMCNFGKLEAARELFSNLF 483


>gi|147845950|emb|CAN82028.1| hypothetical protein VITISV_000613 [Vitis vinifera]
          Length = 790

 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 85/390 (21%), Positives = 162/390 (41%), Gaps = 43/390 (11%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y I++ +  K GK  E++  F+++ ++G  PN   Y  MI+ L N   +D  + +FS +
Sbjct: 329 TYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSKM 388

Query: 234 PLMRIKRTSKQY-----LILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER-MQ 287
                +     +     +++ EG +G  R DE   + N      KF  +++   L R + 
Sbjct: 389 VENNCRPNGFTFSVILNVLVAEGQLG--RLDEVVEVSN------KFMNKSIYAYLVRTLS 440

Query: 288 EMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPK 347
           ++G    A+          R+ +++Y  D S  DE        G R AY   L+   D  
Sbjct: 441 KLGHASEAH----------RLLHLQY--DWSFHDE--------GDRDAYMSMLESLCDAG 480

Query: 348 ALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY 407
                LD  S      ++    ++ T  V   L   K   +  H       Q G + D++
Sbjct: 481 KTTEALDLLSKIHEKRISTDTVMYNT--VLSALGKLKKT-SDLHDLYEKMKQDGPSPDIF 537

Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDD 467
           +   +++   R G VE   ++  +L +   +    +   +I+  G +   D A   F + 
Sbjct: 538 SYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEM 597

Query: 468 RTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
           R     P      ++ YS+L+    K  +   A  + +EM+  G  P++ T++ L+    
Sbjct: 598 REEGLSPD-----VVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLE 652

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
             G       L++ ++Q G+ PD+  + VL
Sbjct: 653 RSGRTAEAVDLYAKLKQQGLTPDSITYAVL 682



 Score = 46.6 bits (109), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 12/167 (7%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+ +  +  R  +A+ + EE+  S   PD+ +F+ L+      GD       F  +R
Sbjct: 539 YNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMR 598

Query: 543 QNGVEPDAYMFKVLIQAY---------CKYLSN---SNLMPDAATKELLKKSLWKEGRRK 590
           + G+ PD   +  LI+ +         C+           P+  T  +L   L + GR  
Sbjct: 599 EEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTA 658

Query: 591 EAAAVEERCEKINDVPSLALRGHIWAVSSADLTRVHSIYRNSITSIV 637
           EA  +  + ++    P       +  + S    +V    +N IT  V
Sbjct: 659 EAVDLYAKLKQQGLTPDSITYAVLERLQSGSHQKVRVRRKNPITGWV 705



 Score = 45.4 bits (106), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 32/151 (21%), Positives = 69/151 (45%), Gaps = 5/151 (3%)

Query: 98  FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVL 157
           FS+N      L +   ++ R  E   +  ++ +S      ++F +L+     +GD++   
Sbjct: 537 FSYN-----ILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAH 591

Query: 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217
             + E R+        +Y+ ++  + KT K   A   F +++ EG  PN  TY ++++ L
Sbjct: 592 MRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCL 651

Query: 218 VNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
              G+   A+++++ L    +   S  Y +L
Sbjct: 652 ERSGRTAEAVDLYAKLKQQGLTPDSITYAVL 682


>gi|449507908|ref|XP_004163164.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Cucumis sativus]
          Length = 685

 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 106/545 (19%), Positives = 205/545 (37%), Gaps = 56/545 (10%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKS-NPNFSHNQ---STLHALATVLAKSQRNHELK 122
           L P   +  L+S  + D AL       S  P F H+    S +  + +  + S+R  +++
Sbjct: 128 LTPAEASEILKSLNSPDLALQFFHRCSSLCPKFRHDAFTYSRILLMLSHSSSSKRIDQVR 187

Query: 123 TLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVY 182
            ++  +   +          L++ +S++ DLEL      ++  R   L+  +Y  ++  +
Sbjct: 188 EILSQMDRDQIRGTISTVNILIKIFSSNEDLELCTGLIKKWDLR---LNAYTYRCLLQAH 244

Query: 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
            ++  +  A   + ++   G   +   Y ++++ L    +LD + +VF  + L       
Sbjct: 245 IRSRDSDRAFNVYMEMWSNGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDE 304

Query: 243 KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLRE 301
             Y I++     + R +E+ +L  EM   G  P   A    ++ + + G +  A      
Sbjct: 305 YTYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCN 364

Query: 302 MLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVV 361
           M+ +    N R  E                    Y + L   +    L   LDE      
Sbjct: 365 MIKN----NCRPNE------------------FTYSIILNVLVAEGQLGR-LDEVLEVSN 401

Query: 362 SLLADAKFVWTTRLVCKVLRHFKSPETAWHFFC--WVAYQPGYTHDVYALEKMLTILARH 419
             +  + + +  R + K L H      A   FC  W ++  G   D Y    ML  L R 
Sbjct: 402 KFINKSIYAYLVRTLSK-LGH---SSEAHRLFCNMW-SFHDGGDRDAYI--SMLESLCRG 454

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL 479
           G       L++K+   G+         ++   G  K+  + L   ++     GP   F  
Sbjct: 455 GKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGKLKQV-SHLHDLYEKMKQDGP---FPD 510

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +  Y+ L+ +L +  +  +A+ V EE+  S   PD+ +++ L+      GD       F 
Sbjct: 511 IFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFL 570

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEG 587
            ++  G+ PD   +  LI+ + K             +      P+  T  +L   L + G
Sbjct: 571 EMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCLERAG 630

Query: 588 RRKEA 592
           R  E 
Sbjct: 631 RTAET 635



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/393 (20%), Positives = 157/393 (39%), Gaps = 51/393 (12%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y I++ +  K G+  E++  F +++ +G  PN   Y  MI+ L   G +D A+ +F  +
Sbjct: 306 TYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNM 365

Query: 234 PLMRIKRTSKQYLILV-----EGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER-MQ 287
                +     Y I++     EG +G  R DE   + N      KF  +++   L R + 
Sbjct: 366 IKNNCRPNEFTYSIILNVLVAEGQLG--RLDEVLEVSN------KFINKSIYAYLVRTLS 417

Query: 288 EMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDEN--DDNNSGVRIAYGVQLKPWLD 345
           ++G    A+     M           + DG D D   +  +    G +    ++L   + 
Sbjct: 418 KLGHSSEAHRLFCNMWS---------FHDGGDRDAYISMLESLCRGGKTVEAIELLSKVH 468

Query: 346 PKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHD 405
            K ++     ++  V+S L   K V                 +  H       Q G   D
Sbjct: 469 EKGISTDTMMYN-TVLSTLGKLKQV-----------------SHLHDLYEKMKQDGPFPD 510

Query: 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465
           ++    +++ L R G V+    +  +L S   +    +   +I+  G +   D A   F 
Sbjct: 511 IFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFL 570

Query: 466 D--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
           +  D+ L   +      + YS+L+    K  +   A ++ + MI  G  P++ T++ L+ 
Sbjct: 571 EMQDKGLNPDV------VTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLD 624

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
                G       L++ +R+ G+ PD+  + +L
Sbjct: 625 CLERAGRTAETVDLYAKLREQGLTPDSITYAIL 657



 Score = 47.0 bits (110), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 104/225 (46%), Gaps = 25/225 (11%)

Query: 345 DPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFF--CWVAYQPGY 402
           +P +   T+D+   ++ S         T     ++L+   SP+ A  FF  C  +  P +
Sbjct: 102 NPHSSLITIDDRFSDLSSYFQSLSVSLTPAEASEILKSLNSPDLALQFFHRC-SSLCPKF 160

Query: 403 THDVYALEKMLTILARHGHVELVDR---LIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
            HD +   ++L +L+     + +D+   +++++  D +R   ST+ ++I  +        
Sbjct: 161 RHDAFTYSRILLMLSHSSSSKRIDQVREILSQMDRDQIRGTISTVNILIKIF-------- 212

Query: 460 ALKAFHDDRTLC-GPISKFKLML---LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
              + ++D  LC G I K+ L L    Y  LL+   + +    A NV  EM  +G   D+
Sbjct: 213 ---SSNEDLELCTGLIKKWDLRLNAYTYRCLLQAHIRSRDSDRAFNVYMEMWSNGYQLDI 269

Query: 516 QTFSGLMYHFALQGDEKIVQ--KLFSMVRQNGVEPDAYMFKVLIQ 558
             ++ L+   AL  DE++ +  K+F  ++     PD Y + ++I+
Sbjct: 270 FAYNMLLD--ALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIR 312



 Score = 39.7 bits (91), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 29/145 (20%), Positives = 66/145 (45%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T + L + L +  +  E   +  ++ SS      +++ +L+     +GD++     + E 
Sbjct: 513 TYNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEM 572

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
           + +       +Y+ ++  + KT K   A   F ++I +G  PN  TY ++++ L   G+ 
Sbjct: 573 QDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCLERAGRT 632

Query: 224 DSALEVFSALPLMRIKRTSKQYLIL 248
              +++++ L    +   S  Y IL
Sbjct: 633 AETVDLYAKLREQGLTPDSITYAIL 657


>gi|449455956|ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
 gi|449492939|ref|XP_004159147.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
          Length = 535

 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 103/486 (21%), Positives = 191/486 (39%), Gaps = 59/486 (12%)

Query: 76  LRSAPNADSALSIME-ALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFL 134
           +R   N D AL I   A K +P F+HN  T HA+   L++++    +++L+ ++  S  +
Sbjct: 59  IRRQQNLDLALQIFHYAGKYHPAFTHNYDTYHAIIYRLSRARAFEPVESLLLELQDSG-I 117

Query: 135 NVSVN-FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE 193
           N S + F+ +++ Y  +   ++ L T+   +      S  S N +++   +  + F +V 
Sbjct: 118 NCSEDLFITVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLLNALVQNNR-FSSVH 176

Query: 194 TFRQVIDE--GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
              +      G +PN  T  ++I+ L     ++ A +VF  +P M I      Y  ++ G
Sbjct: 177 LLFKYSKSKFGVVPNVFTCNILIKALCKKNDVEGARKVFDEMPSMGIVPNVVTYTTILGG 236

Query: 252 FVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNV 311
           +V       AK +  E+ D G  P                          +L D  +K  
Sbjct: 237 YVSRGDMIGAKRVFGELFDHGWLPDATTYT--------------------ILMDGYVKQG 276

Query: 312 RYYEDGSDDDEDENDDNNSGVR---IAYGVQLKPWLDPKALANTLDEWSPEVVSLLAD-- 366
           R+ +     DE E +    GV    I YGV +        L    +  S E ++LL D  
Sbjct: 277 RFTDAVKVMDEMEEN----GVEPNDITYGVII--------LGYCKERKSGEALNLLNDML 324

Query: 367 -AKFVWTTRLVCKVL------RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH 419
             K++  + L CKV+         K     W        +   T D      ++  L + 
Sbjct: 325 EKKYIPNSALCCKVIDVLCGEGRVKEACKMWEKL----LKKNCTPDNAITSTLIHWLCKE 380

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL 479
           G++    +L  +     +    +   LI     + +  +AA     DD    G +     
Sbjct: 381 GNIWEARKLFNEFERGTISSLLTYNTLIAGMCEMGELCEAA--RLWDDMLEKGCVPN--- 435

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
              Y+ L++   K  +  + I V+EEM+  G + +  T+  L+      G  + +  + S
Sbjct: 436 EFTYNMLIKGFLKVGKAKEVIKVVEEMLDKGCLLNESTYLILVEGLLKLGKREELLNILS 495

Query: 540 MVRQNG 545
           M+  +G
Sbjct: 496 MIISSG 501



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 140/359 (38%), Gaps = 92/359 (25%)

Query: 371 WTTRL----VCKVLRHFKSPETAWHFFCWVA-YQPGYTHDVYALEKMLTILARHGHVELV 425
           W  RL    +  ++R  ++ + A   F +   Y P +TH+      ++  L+R    E V
Sbjct: 46  WPQRLFPNRLVAMIRRQQNLDLALQIFHYAGKYHPAFTHNYDTYHAIIYRLSRARAFEPV 105

Query: 426 DRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC-------------- 471
           + L+ +L+  G+         +I  YG++ +   ALK F   +T                
Sbjct: 106 ESLLLELQDSGINCSEDLFITVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLLNA 165

Query: 472 ----GPISKFKLMLLYSS--------------LLRTLTKCKRDFD-AINVLEEMIFSGIV 512
                  S   L+  YS               L++ L K K D + A  V +EM   GIV
Sbjct: 166 LVQNNRFSSVHLLFKYSKSKFGVVPNVFTCNILIKALCK-KNDVEGARKVFDEMPSMGIV 224

Query: 513 PDVQTFSGLMYHFALQGD----EKIVQKLF----------------SMVRQ--------- 543
           P+V T++ ++  +  +GD    +++  +LF                  V+Q         
Sbjct: 225 PNVVTYTTILGGYVSRGDMIGAKRVFGELFDHGWLPDATTYTILMDGYVKQGRFTDAVKV 284

Query: 544 ------NGVEPDAYMFKVLIQAYCKYLSNS---NLMPDAATKELLKKS---------LWK 585
                 NGVEP+   + V+I  YCK   +    NL+ D   K+ +  S         L  
Sbjct: 285 MDEMEENGVEPNDITYGVIILGYCKERKSGEALNLLNDMLEKKYIPNSALCCKVIDVLCG 344

Query: 586 EGRRKEAAAVEERCEKINDVPSLALRGHI--WAVSSADLTRVHSIY----RNSITSIVT 638
           EGR KEA  + E+  K N  P  A+   +  W     ++     ++    R +I+S++T
Sbjct: 345 EGRVKEACKMWEKLLKKNCTPDNAITSTLIHWLCKEGNIWEARKLFNEFERGTISSLLT 403


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 103/260 (39%), Gaps = 13/260 (5%)

Query: 65  RLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNH 119
           R +DP I T+             D A  + E + S   F  +  T + L     KS+R  
Sbjct: 284 RSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFP-DLDTYNTLIKGFCKSKRVE 342

Query: 120 ELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM 179
           +   L  ++S    +  +V +  L+Q     GD +     + +           +Y+I++
Sbjct: 343 DGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILL 402

Query: 180 SVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIK 239
                 GK  +A+E F  +       +   YT MIE +   GK+D   ++F +L L  +K
Sbjct: 403 DGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVK 462

Query: 240 RTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQ-EMGFIQGANEF 298
                Y  ++ G        EA +LL +M++DG  P       L R     G    + E 
Sbjct: 463 PNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAEL 522

Query: 299 LREMLPDKRIKNVRYYEDGS 318
           +REM      ++ R+  D S
Sbjct: 523 IREM------RSCRFVGDAS 536



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 79/190 (41%), Gaps = 16/190 (8%)

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
           L + G ++L   L+ K+ +  +         IID     +  D AL  F +  T      
Sbjct: 160 LCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETK----G 215

Query: 476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ 535
               ++ YSSL+  L    R  DA  +L +MI   I P++ TF+ L+  F  +G     +
Sbjct: 216 IRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAE 275

Query: 536 KLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSL 583
           KL   + +  ++PD + +  LI  +C            +++ + +  PD  T   L K  
Sbjct: 276 KLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGF 335

Query: 584 WKEGRRKEAA 593
            K  R ++  
Sbjct: 336 CKSKRVEDGT 345



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 9/136 (6%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++L++   K KR  D   +  EM   G+V D  T++ L+      GD    QK+F  + 
Sbjct: 328 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 387

Query: 543 QNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCE-- 600
            +GV PD   + +L+   C   +N  L       + ++KS  K         +E  C+  
Sbjct: 388 SDGVPPDIMTYSILLDGLC---NNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAG 444

Query: 601 KIND----VPSLALRG 612
           K++D      SL+L+G
Sbjct: 445 KVDDGWDLFCSLSLKG 460



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 91/551 (16%), Positives = 200/551 (36%), Gaps = 89/551 (16%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
             SHN  T + L     +  +      L+G +    +    V   +L+  Y     +   
Sbjct: 40  GISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDA 99

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           ++  ++  +      T ++  ++       K  EAV    +++  G  PN  TY V++  
Sbjct: 100 VALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG 159

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
           L   G +D A  + + +   +I+     +  +++        D+A +L  EM   G  P 
Sbjct: 160 LCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPN 219

Query: 277 RAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIA 335
                +L   +   G    A++ L +M+  K                             
Sbjct: 220 VVTYSSLISCLCSYGRWSDASQLLSDMIEKK----------------------------- 250

Query: 336 YGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCW 395
                   ++P      L  ++  + + + + KFV   +L   +++    P         
Sbjct: 251 --------INP-----NLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDP--------- 288

Query: 396 VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455
                    D++    ++     H  ++   ++   + S        T   +I  +  SK
Sbjct: 289 ---------DIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSK 339

Query: 456 KADAALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP 513
           + +   + F +   R L G        + Y++L++ L       +A  V ++M+  G+ P
Sbjct: 340 RVEDGTELFREMSHRGLVGDT------VTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPP 393

Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY---------- 563
           D+ T+S L+      G  +   ++F  ++++ ++ D Y++  +I+  CK           
Sbjct: 394 DIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLF 453

Query: 564 --LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA-----LRGHIW- 615
             LS   + P+  T   +   L  +   +EA A+ ++ ++   +P        +R H+  
Sbjct: 454 CSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRD 513

Query: 616 --AVSSADLTR 624
               +SA+L R
Sbjct: 514 GDKAASAELIR 524



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 10/160 (6%)

Query: 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465
           ++   K+L+ +A+    +LV  L  K++  G+     T  ++I+ +    +   AL    
Sbjct: 10  IFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLAL---- 65

Query: 466 DDRTLCGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
               L G + K      ++  SSLL      KR  DA+ ++++M+  G  PD  TF+ L+
Sbjct: 66  ---ALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLI 122

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           +   L         L   + Q G +P+   + V++   CK
Sbjct: 123 HGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCK 162


>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
 gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
          Length = 696

 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 85/420 (20%), Positives = 167/420 (39%), Gaps = 42/420 (10%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SY  V+  + K G   +A   F +++D G  PN  T   +I+ L  +  +D A  V   +
Sbjct: 254 SYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQM 313

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFI 292
               I      Y  L+ G++   ++ EA  +L EM  DG+ P      + ++ + + G  
Sbjct: 314 IDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLH 373

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
             A E    M+   +  N                         YG  L  +     L + 
Sbjct: 374 AEAREIFNSMIQSGQKPNAS----------------------TYGSLLHGYATEGNLVDM 411

Query: 353 LDEWSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
            +     V + +   + V+   +   CK  R  ++  T          Q G+  D+ A  
Sbjct: 412 NNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKM-----QQQGFMPDIVAYT 466

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD--DR 468
            ++  L + G ++       ++  DG+     T   +I  + +  K + A + F++  DR
Sbjct: 467 TVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDR 526

Query: 469 TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
            +   ++ F      +S++  L K  +  +A  + + M  +G  P+V +++ +++ + + 
Sbjct: 527 GIPPNVNTF------NSMIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIA 580

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGR 588
           G+   V KL   +   G++P A  F  L+      + +  L PD  T + L  S  ++GR
Sbjct: 581 GEVGEVMKLLDDMLLIGLKPTAVTFNTLLDG----MVSMGLKPDVVTCKTLIDSCCEDGR 636



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 2/176 (1%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGD-ISSSKFLNVSVNFMNLMQWYSTSGDLELVLST 159
           N  T   L   L KS  + E + +    I S +  N S  + +L+  Y+T G+L  + + 
Sbjct: 356 NVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNAS-TYGSLLHGYATEGNLVDMNNV 414

Query: 160 WNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219
            +   Q         +NI +  Y K G+  EA  TF ++  +G +P+   YT +I+ L  
Sbjct: 415 KDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCK 474

Query: 220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +G+LD A+  F  +    +      +  L+ GF    ++++A+ L  EM D G  P
Sbjct: 475 IGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPP 530



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 14/137 (10%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ YS L+  L K     +A  +   MI SG  P+  T+  L++ +A +G+   +  +  
Sbjct: 357 VVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKD 416

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEG 587
           ++ QNG+ P  ++F + I AYCK             +     MPD      +   L K G
Sbjct: 417 LMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIG 476

Query: 588 RRKEAAAVEERCEKIND 604
           R  +  A+   C+ I+D
Sbjct: 477 RLDD--AMSRFCQMIDD 491



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/215 (20%), Positives = 80/215 (37%), Gaps = 39/215 (18%)

Query: 96  PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLEL 155
           PN     S +  L  V A  +    L+ +I +      +     + +L+  Y +SG    
Sbjct: 285 PNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDE----HIMPNCTTYNSLIHGYLSSGQWTE 340

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
            +    E  +  +  +  +Y++++    K+G + EA E F  +I  G  PN+ TY  ++ 
Sbjct: 341 AVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLH 400

Query: 216 ---------------------------HLVNL--------GKLDSALEVFSALPLMRIKR 240
                                      H+ N+        G+LD A   F+ +       
Sbjct: 401 GYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMP 460

Query: 241 TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               Y  +++G   + R D+A S   +M DDG  P
Sbjct: 461 DIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSP 495



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 4/142 (2%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++N ++  +A  GK  +A E F +++D G  PN  T+  MI+ L   GK+  A ++F  +
Sbjct: 499 TFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLM 558

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGF- 291
           P    K     Y  ++ G+       E   LL++M   G  P        L+ M  MG  
Sbjct: 559 PRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMVSMGLK 618

Query: 292 --IQGANEFLREMLPDKRIKNV 311
             +      +     D RI+++
Sbjct: 619 PDVVTCKTLIDSCCEDGRIEDI 640



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 8/165 (4%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G T DV++   +L  L      E    LI  +  DG   P + +      +G  K+ D  
Sbjct: 210 GCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPNVVSYTTVIHGFFKEGDVG 269

Query: 461 LKAFHDDRTLCGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
            KA+    TL   +    +   ++  +S++  L K +    A  VL++MI   I+P+  T
Sbjct: 270 -KAY----TLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTT 324

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           ++ L++ +   G      ++   + ++G  P+   + +LI   CK
Sbjct: 325 YNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCK 369


>gi|358346655|ref|XP_003637381.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503316|gb|AES84519.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1023

 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 101/501 (20%), Positives = 203/501 (40%), Gaps = 71/501 (14%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
            V +  L+  Y   G +EL      +  +     +  +++ +++ YAK G   +AV+  R
Sbjct: 461 CVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLR 520

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           +++    +PN+  Y ++I+     G+ D A +    +   R++ ++  + IL+     V 
Sbjct: 521 EMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVG 580

Query: 257 RFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLR-EMLPDKRIKNVRYYE 315
           R DEA+SL+ +M   G  P      +L      G+ +  N+     ++ + + KN+R+  
Sbjct: 581 RMDEARSLIIDMYSKGIDPDIVNYASLID----GYFKEGNQLAALSIVQEMKEKNIRFD- 635

Query: 316 DGSDDDEDENDDNNSGVRIAYGVQLKPWL-----DPKALANTLDE--WSPEVV---SLLA 365
                             +AY   +K  L     DP+ + + + E   +P+ +   +++ 
Sbjct: 636 -----------------VVAYNALIKGLLRLGKYDPRYVCSRMIELGLAPDCITYNTIIN 678

Query: 366 DAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELV 425
                  T     +L   KS               G   +      ++  L + G VE  
Sbjct: 679 TYCIKGKTEDALDILNEMKS--------------YGIMPNAVTYNILIGGLCKTGAVEKA 724

Query: 426 DRLIAK-LRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLML-LY 483
           +  + + L  + +  P  T + ++  Y  S+KAD  L+  H+     G     +L L +Y
Sbjct: 725 ESALDEMLVMEFVPTPI-THKFLVKAYSRSEKADKILQ-IHEKLVASG----LELSLTVY 778

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           ++L+    +      A  VL+EM+  GI  D+ T++ L+  +      +   K +S +  
Sbjct: 779 NTLITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMFV 838

Query: 544 NGVEPDAYMFKVLIQAYC-------------KYLSNSN---LMPDAATKELLKKSLWKEG 587
           +G+ P+   +  L+                 K +S  N   L+P+AAT ++L     + G
Sbjct: 839 DGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDILVSGYGRVG 898

Query: 588 RRKEAAAVEERCEKINDVPSL 608
            RK+   +         VP+L
Sbjct: 899 NRKKTIILHIEMITKGFVPTL 919



 Score = 45.8 bits (107), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 12/140 (8%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y++L+    K     ++ ++ ++MI +GI+PDV T S ++Y F   G       LF 
Sbjct: 321 LVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFR 380

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK---YLSNSNLMP---------DAATKELLKKSLWKEG 587
            + + G++P+   +  +I +  K    +   NL           D  T   +   L+K G
Sbjct: 381 EMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVG 440

Query: 588 RRKEAAAVEERCEKINDVPS 607
           + KEA  V E   K+N  P+
Sbjct: 441 KTKEAEEVFETILKLNLAPN 460



 Score = 45.8 bits (107), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 47/237 (19%), Positives = 100/237 (42%), Gaps = 13/237 (5%)

Query: 51  RSNSSNSLSSLLNDRLLDPFI---VTH-----ALRSAPNADSALSIMEALKSNPNFSHNQ 102
           ++ +     S L++ L+  F+   +TH     A   +  AD  L I E L ++     + 
Sbjct: 717 KTGAVEKAESALDEMLVMEFVPTPITHKFLVKAYSRSEKADKILQIHEKLVAS-GLELSL 775

Query: 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
           +  + L TV  +     + K ++ ++         V +  L++ Y T   +E  L T+++
Sbjct: 776 TVYNTLITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQ 835

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE----GAIPNSRTYTVMIEHLV 218
                   +  +YN ++   +  G   E +E   +++ E    G +PN+ TY +++    
Sbjct: 836 MFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDILVSGYG 895

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            +G     + +   +       T K Y +L+  +    +  EA+ LLN++   G+ P
Sbjct: 896 RVGNRKKTIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARELLNDLLTKGRIP 952



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 61/125 (48%)

Query: 96  PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLEL 155
           PN +   + L  L+      +   E + L+ +++    +  +  +  L+  Y   G+ + 
Sbjct: 843 PNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDILVSGYGRVGNRKK 902

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
            +    E   +  + + ++YN+++S YAK+GK  EA E    ++ +G IPNS TY ++  
Sbjct: 903 TIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARELLNDLLTKGRIPNSFTYDILTC 962

Query: 216 HLVNL 220
             +NL
Sbjct: 963 GWLNL 967



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 103/477 (21%), Positives = 185/477 (38%), Gaps = 69/477 (14%)

Query: 151 GDLELVLSTWNEYRQRAKLLSTE--SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSR 208
           GDL+L L     Y +   ++  +  +YN V+  + + G   +      +++  G   +S 
Sbjct: 143 GDLDLALG----YLRNNDVVDIDNVTYNTVIWGFCQKGLVDQGFGLLSEMVKRGLCFDSI 198

Query: 209 TYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL-NE 267
           T  ++++    +G +  A  V   L    + +       L++G+       +A  L+ N 
Sbjct: 199 TCNILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIGLNTLIDGYCEAGLMSQATELIENS 258

Query: 268 MRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLP----DKRIKNVRYYEDGSDDDED 323
            R D K         L+   + G +  A     E+L     + R+KN        +D   
Sbjct: 259 WRSDVKIDIVTYNTLLKAFCKTGDLTRAESLFNEILGFWKDEDRLKN--------NDVVT 310

Query: 324 ENDDNN--------SGVRIAY----GVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVW 371
           +N+  N        + +  AY    GV+    L  K + N +    P+VV+         
Sbjct: 311 QNEIKNLQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGI---MPDVVT--------- 358

Query: 372 TTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAK 431
            + ++    RH K  E A  F     Y+ G   +  +   ++  L + G V     L ++
Sbjct: 359 CSSILYGFCRHGKLTEAAVLF--REMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQ 416

Query: 432 LRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL---MLLYSSLLR 488
           +   G+     T   ++D      K   A + F         I K  L    + YS+LL 
Sbjct: 417 MVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFE-------TILKLNLAPNCVTYSALLD 469

Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD-EKIVQKLFSMVRQNGVE 547
              K  +   A  VL++M    + P+V TFS ++  +A +G   K V  L  MV++N V 
Sbjct: 470 GYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRN-VM 528

Query: 548 PDAYMFKVLIQAY------------CKYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           P+  ++ +LI  Y            CK + +  L       ++L  +L + GR  EA
Sbjct: 529 PNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEA 585



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 75/403 (18%), Positives = 157/403 (38%), Gaps = 32/403 (7%)

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           VM    K GK  EA E F  ++     PN  TY+ +++    LGK++ A  V   +    
Sbjct: 432 VMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEH 491

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGAN 296
           +      +  ++ G+       +A  +L EM      P   +  + ++   + G    A+
Sbjct: 492 VPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVAD 551

Query: 297 EFLREMLPDKRIKNVRYYED---GSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTL 353
           +F +EM   +R++      D    +       D+  S +   Y   + P  D    A+ +
Sbjct: 552 DFCKEM-KSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDP--DIVNYASLI 608

Query: 354 DEWSPE-----VVSLLADAK-------FVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPG 401
           D +  E      +S++ + K        V    L+  +LR  K       + C    + G
Sbjct: 609 DGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDP---RYVCSRMIELG 665

Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY---GISKKAD 458
              D      ++      G  E    ++ +++S G+     T  ++I      G  +KA+
Sbjct: 666 LAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGAVEKAE 725

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
           +AL        +  PI+       +  L++  ++ ++    + + E+++ SG+   +  +
Sbjct: 726 SALDEMLVMEFVPTPIT-------HKFLVKAYSRSEKADKILQIHEKLVASGLELSLTVY 778

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           + L+  F   G  +  + +   + + G+  D   +  LI+ YC
Sbjct: 779 NTLITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIRGYC 821



 Score = 40.0 bits (92), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 84/417 (20%), Positives = 161/417 (38%), Gaps = 50/417 (11%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SY  +++   K+G+  EA     Q++  G   +  T T +++ L  +GK   A EVF  +
Sbjct: 393 SYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETI 452

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
             + +      Y  L++G+  + + + A+ +L +M  +   P        +    + G +
Sbjct: 453 LKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGML 512

Query: 293 QGANEFLREMLPDKRIKNV--------RYYEDGSDDDEDENDDNNSGVRI-AYGVQLKPW 343
             A + LREM+    + N          Y++ G  D  D+        R+    V     
Sbjct: 513 SKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDIL 572

Query: 344 LDPKALANTLDE------------WSPEVVSL--LADAKFVWTTRLVC-KVLRHFKSPET 388
           L+       +DE              P++V+   L D  F    +L    +++  K    
Sbjct: 573 LNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNI 632

Query: 389 AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII 448
            +     VAY         AL K L  L ++    +  R+I      G+     T   II
Sbjct: 633 RFDV---VAYN--------ALIKGLLRLGKYDPRYVCSRMIEL----GLAPDCITYNTII 677

Query: 449 DFYGISKKADAALKAFHDDRTLCGPISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEE 505
           + Y I  K + AL   ++ ++       + +M   + Y+ L+  L K      A + L+E
Sbjct: 678 NTYCIKGKTEDALDILNEMKS-------YGIMPNAVTYNILIGGLCKTGAVEKAESALDE 730

Query: 506 MIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           M+    VP   T   L+  ++       + ++   +  +G+E    ++  LI  +C+
Sbjct: 731 MLVMEFVPTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELSLTVYNTLITVFCR 787



 Score = 38.9 bits (89), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 101/240 (42%), Gaps = 15/240 (6%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHA-----LRSAPNADSALSIMEALKSNP 96
           L+++++   R + + SL   +  + +DP IV +A          N  +ALSI++ +K   
Sbjct: 572 LLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEK- 630

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
           N   +    +AL   L +  + ++ + +   +         + +  ++  Y   G  E  
Sbjct: 631 NIRFDVVAYNALIKGLLRLGK-YDPRYVCSRMIELGLAPDCITYNTIINTYCIKGKTEDA 689

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA----IPNSRTYTV 212
           L   NE +    + +  +YNI++    KTG    AVE     +DE      +P   T+  
Sbjct: 690 LDILNEMKSYGIMPNAVTYNILIGGLCKTG----AVEKAESALDEMLVMEFVPTPITHKF 745

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +++      K D  L++   L    ++ +   Y  L+  F  +    +AK +L+EM   G
Sbjct: 746 LVKAYSRSEKADKILQIHEKLVASGLELSLTVYNTLITVFCRLGMTRKAKVVLDEMVKRG 805


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 86/198 (43%), Gaps = 4/198 (2%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           A     +ME     PN     + +H       KS+R  +   +  ++S    +  ++ + 
Sbjct: 312 ARQMFYLMERNGCYPNEVIYTTLIHGFC----KSKRVEDGMKIFYEMSQKGVVANTITYT 367

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            L+Q Y   G  ++    +N+   R       +YN+++      GK  +A+  F  +   
Sbjct: 368 VLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKR 427

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
               N  TYT++I+ +  LGK++ A ++F +L    +K     Y  ++ GF       EA
Sbjct: 428 EMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEA 487

Query: 262 KSLLNEMRDDGKFPGRAM 279
            SL  +M++DG  P  ++
Sbjct: 488 DSLFKKMKEDGFLPNESV 505



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 78/179 (43%), Gaps = 1/179 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+  +  S  +E  +  + E  Q+  + +T +Y +++  Y   G+   A E F Q
Sbjct: 329 VIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQ 388

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +    A P+ RTY V+++ L   GK++ AL +F  +    +      Y I+++G   + +
Sbjct: 389 MSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGK 448

Query: 258 FDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
            ++A  L   +   G  P        +      G I  A+   ++M  D  + N   Y+
Sbjct: 449 VEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVYK 507



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 89/449 (19%), Positives = 159/449 (35%), Gaps = 58/449 (12%)

Query: 37  LRRAQLIDSIRLAVRSNSSNSLSSLLN-DRLLDPFIVTHALRSAPNADSALSIMEALKSN 95
           L   Q  D++ L  R   S  L S+++  RLL    V   +       S    M+ L   
Sbjct: 59  LHNLQFNDALDLFTRMVHSRPLPSIIDFTRLLS---VIAKMNRYDVVISLFEQMQILGIP 115

Query: 96  PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLEL 155
           P        +H +      S +       +G +    F    V F +L+  Y     +E 
Sbjct: 116 PLLCTCNIVMHCVCL----SSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIED 171

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
            ++ +++        +  +Y  ++    K      AVE F Q+   G+ PN  TY  ++ 
Sbjct: 172 AIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVT 231

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            L  +G+   A  +   +   RI+     +  L++ FV V +  EAK L N M     +P
Sbjct: 232 GLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYP 291

Query: 276 ----------GRAMRVALERMQEMGFI---QGA--NEFLREMLPDKRIKNVRYYEDGSDD 320
                     G  M   L+  ++M ++    G   NE +   L     K+ R  EDG   
Sbjct: 292 DVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKR-VEDGMKI 350

Query: 321 DEDENDDNNSGVRIAYGVQLKPWL---DPKALANTLDEWS-----PEVVS-------LLA 365
             + +        I Y V ++ +     P       ++ S     P++ +       L  
Sbjct: 351 FYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCC 410

Query: 366 DAKF------------------VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY 407
           + K                   + T  ++ + +      E A+  FC + +  G   +V 
Sbjct: 411 NGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSL-FSKGMKPNVI 469

Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDG 436
               M++   R G +   D L  K++ DG
Sbjct: 470 TYTTMISGFCRRGLIHEADSLFKKMKEDG 498



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 26/124 (20%), Positives = 57/124 (45%), Gaps = 12/124 (9%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           ++Y++L+    K KR  D + +  EM   G+V +  T++ L+  + L G   + Q++F+ 
Sbjct: 329 VIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQ 388

Query: 541 VRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGR 588
           +      PD   + VL+   C            +Y+    +  +  T  ++ + + K G+
Sbjct: 389 MSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGK 448

Query: 589 RKEA 592
            ++A
Sbjct: 449 VEDA 452



 Score = 43.5 bits (101), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 71/165 (43%), Gaps = 10/165 (6%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR-LIIDFYGISKKADA 459
           G+  +V     ++  L ++ H+     L  ++ ++G R    T   L+     I +  DA
Sbjct: 183 GFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDA 242

Query: 460 A--LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
           A  L+     R     I+       +++L+    K  +  +A  +   MI   + PDV T
Sbjct: 243 AWLLRDMMKRRIEPNVIT-------FTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFT 295

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           +  L+    + G     +++F ++ +NG  P+  ++  LI  +CK
Sbjct: 296 YGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCK 340



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++L+  L +  R  DA  +L +M+   I P+V TF+ L+  F   G     ++L++++ 
Sbjct: 226 YNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMI 285

Query: 543 QNGVEPDAYMFKVLIQAYCKY 563
           Q  V PD + +  LI   C Y
Sbjct: 286 QMSVYPDVFTYGSLINGLCMY 306


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 116/533 (21%), Positives = 205/533 (38%), Gaps = 64/533 (12%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           +Q T   L   L+K+ +      L+ ++  S      V +  L+      G +   L   
Sbjct: 159 DQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLC 218

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           ++  +R  LL   +YN ++      G+  E  +   +++ E   P+  T+ ++I+ L   
Sbjct: 219 SQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKE 278

Query: 221 GKLDSALEVFSALPLMRIKRTSK----QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
           G++   LE    L +M  KR  K     Y  L+EG+   E   EA+ L N M   G  P 
Sbjct: 279 GRI---LEAQGVLAMMS-KRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPD 334

Query: 277 -RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIA 335
                V ++   +   +  A    +E+     +  +  Y    D         NSG RI+
Sbjct: 335 VLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLID------GLCNSG-RIS 387

Query: 336 YGVQLKPWLDPKALANTLDEWSPEVVS--LLADAKFVWTTRLVCKVLRHFKSPETAWHFF 393
           +  +L   +   A         P+VV+  +L DA        +CK  R  ++        
Sbjct: 388 HVKKLLDEMHGSA-------QPPDVVTYNILIDA--------LCKEGRILEALGVL---- 428

Query: 394 CWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGI 453
             +  + G   ++     M+       +V +   +  ++   G+        ++I+ Y  
Sbjct: 429 -VMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCK 487

Query: 454 SKKADAALKAFHDDR--TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
           ++  D A+  F + R   L   I+       Y+SL+  L    R      +L+EM  SG 
Sbjct: 488 TEMVDEAIVLFKEMRHKNLIPDIAS------YNSLIDGLCNLGRIPHVQELLDEMCDSGQ 541

Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ--NGVEPDAYMFKVLIQAYC-------- 561
            PDV T++ L+  F      +   K  S+ RQ   G+ PD Y    ++   C        
Sbjct: 542 SPDVITYNILLDAFC---KTQPFDKAISLFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMA 598

Query: 562 ----KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLAL 610
               K+L      P+  T  +L  +L K+G   EA  +  + E  ND P  A+
Sbjct: 599 EDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMED-NDRPPDAI 650



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 94/233 (40%), Gaps = 24/233 (10%)

Query: 393 FCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYG 452
           FC      GY  D +    ++  L+++G ++    L+ ++    ++        +ID  G
Sbjct: 147 FCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALID--G 204

Query: 453 ISKKADAALKAFHDDRTLCGPISKFKLML---LYSSLLRTLTKCKRDFDAINVLEEMIFS 509
           + K    +     D   LC  I +  ++L    Y+SL+       R  +   +L +M+  
Sbjct: 205 LCKDGFVS-----DALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRE 259

Query: 510 GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC-------- 561
            + PD  TF+ L+     +G     Q + +M+ + G +PD   +  L++ YC        
Sbjct: 260 NVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEA 319

Query: 562 ----KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV-EERCEKINDVPSLA 609
                 +    L PD     +L     K     EA  + +E C K N VP++A
Sbjct: 320 RELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNK-NLVPTIA 371



 Score = 43.1 bits (100), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 73/179 (40%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
           N   +  T + L   L K  R  E + ++  +S        V +  LM+ Y +  ++   
Sbjct: 260 NVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEA 319

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
              +N   +R       +YN+++  Y KT    EA+  F+++ ++  +P   +Y  +I+ 
Sbjct: 320 RELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDG 379

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           L N G++    ++   +           Y IL++      R  EA  +L  M   G  P
Sbjct: 380 LCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKP 438



 Score = 40.0 bits (92), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 42/206 (20%), Positives = 81/206 (39%), Gaps = 32/206 (15%)

Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDD 467
             +K+L  + R GH      L  +L+S G+    +T  ++I+ Y            FH  
Sbjct: 57  VFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCY------------FHQS 104

Query: 468 RT-----LCGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
            T     L   I K      ++ +++++         F A++  + ++  G + D  T+ 
Sbjct: 105 HTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYG 164

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--YLSNS---------- 567
            L+   +  G  K    L   + ++ V+P+  M+  LI   CK  ++S++          
Sbjct: 165 TLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGER 224

Query: 568 NLMPDAATKELLKKSLWKEGRRKEAA 593
            ++ DA T   L       GR +E  
Sbjct: 225 GILLDAVTYNSLIDGCCSVGRWQEVT 250


>gi|115455297|ref|NP_001051249.1| Os03g0746400 [Oryza sativa Japonica Group]
 gi|113549720|dbj|BAF13163.1| Os03g0746400, partial [Oryza sativa Japonica Group]
          Length = 613

 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 120/296 (40%), Gaps = 44/296 (14%)

Query: 357 SPEVVSLLADAKFVWTTR-LVCKVLRHFKSP-ETAWHFFCWVAYQPGYTHDVYALEKMLT 414
           SPE + +  D   V  T  LV K+L  F +    A+ FF WV  Q GY H   + + M+ 
Sbjct: 174 SPEAIMIAMDCCSVRVTGCLVDKILTRFSNDWVAAFGFFMWVGTQGGYCHCADSYDLMVD 233

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DR----- 468
           IL +    +L+  LI ++   G  +   T+  ++     + +   A+ AFH  DR     
Sbjct: 234 ILGKFKQFDLMWGLINQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVK 293

Query: 469 ----------TLCGPISKFKLMLLYSSLLRTLTKCKRDF--------------DAINVLE 504
                     TLC   S  +   ++  L  T+   +  F              +A++ +E
Sbjct: 294 DTKAMNVLLDTLCKERSVKRARGVFQELRGTIPPDENSFNTLVHGWCKARMLKEALDTME 353

Query: 505 EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY- 563
           EM   G  P V T++ L+  + ++ D + V  L   +R+    P+   + +L+ A  K  
Sbjct: 354 EMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAG 413

Query: 564 -----------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
                      L    + PDA+    L   L + GR ++A +V E        P++
Sbjct: 414 RTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNV 469



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 77/175 (44%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           ++++ + L     K++   E    + ++    F    V + +L++ Y    D + V +  
Sbjct: 328 DENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALL 387

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           +E R+R    +  +Y I+M    K G+  EA++TF ++ ++G  P++  Y  +I  L   
Sbjct: 388 DEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRA 447

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           G+L+ A  V   +    I      +  L+       + + A  LL +M +    P
Sbjct: 448 GRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNP 502



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 12/124 (9%)

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
            Y+SL+  L +  R  DA +V+EEM  +GI P+V TF+ L+         +   KL   +
Sbjct: 436 FYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKM 495

Query: 542 RQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRR 589
            +    PD   +  L++  CK            ++   ++ PD +T  LL   L + G+ 
Sbjct: 496 EEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKV 555

Query: 590 KEAA 593
            ++ 
Sbjct: 556 AQSC 559



 Score = 43.1 bits (100), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 42/91 (46%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y+ L+  L K  R  +A++  +++   G+ PD   ++ L+Y     G  +    +  
Sbjct: 399 VVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVE 458

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM 570
            +R  G+ P+   F  LI A C +    N +
Sbjct: 459 EMRTTGIAPNVTTFNTLISAACDHSQAENAL 489


>gi|297816792|ref|XP_002876279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322117|gb|EFH52538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 91/477 (19%), Positives = 183/477 (38%), Gaps = 44/477 (9%)

Query: 89  MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS 148
           ME+L   P+  H    +H +     K Q++ E   L  +   +   NV +    ++ W  
Sbjct: 399 MESLGLTPSVFH----VHTIIQGWLKGQKHEEALKLFDESFETGLANVFI-CNTILSWLC 453

Query: 149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET-FRQVIDEGAIPNS 207
             G ++       +   R    +  SYN VM  + +  KN +   T F  ++++G  PN+
Sbjct: 454 KQGKIDKATELLRKMESRGIGPNVVSYNNVMLAHCRK-KNMDLARTVFSNMLEKGLKPNN 512

Query: 208 RTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNE 267
            TY+++I+         + LEV + +    I+     Y  ++ G   V +  +A+ LL  
Sbjct: 513 YTYSILIDGCFKNHDEQNVLEVVNQMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLAN 572

Query: 268 MRDDGKFPGRAMRV-----ALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDE 322
           M ++ +F    M          +  EM +   A E   EM  +    NV  Y    D   
Sbjct: 573 MIEEKRFCVSCMSYNSIIDGFIKEGEMDYAVAAYE---EMCANGISPNVITYTSLMDGLC 629

Query: 323 DENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRH 382
             N       R+   ++++  +  K +   +  +   +      +     + L  ++L  
Sbjct: 630 KNN-------RMDQALEMRDEMKNKGVKLDIPAYGALIHGFCKKSNMESASALFSELLEE 682

Query: 383 FKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFS 442
             +P            QP Y   +     +       G++     L  K+  DG+R    
Sbjct: 683 GLNPS-----------QPVYNSLISGFRNL-------GNMVAALDLYKKMLKDGLRCDLG 724

Query: 443 TIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINV 502
           T   +ID  G+ K+ +  L +  D  T    +      ++Y+ ++  L+K  +    + +
Sbjct: 725 TYTTLID--GLLKEGNLILAS--DLYTEMQAVGLVPDEIMYTVIVNGLSKKGQFVKVVKM 780

Query: 503 LEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
            EEM  + + P+V  ++ ++     +G+     +L   +   G+ PD   F +L+  
Sbjct: 781 FEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILVSG 837



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 100/428 (23%), Positives = 180/428 (42%), Gaps = 54/428 (12%)

Query: 174 SYNIVMSVYAKTG--KNFE---AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALE 228
           S N+V +    TG  KN +   A++ F ++ +EG  PNS T++V+IE     G+++ ALE
Sbjct: 335 SMNVVAATSLITGHCKNNDLGSALDLFYKMENEGPSPNSVTFSVLIERFSKNGEMEKALE 394

Query: 229 VFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQE 288
            +  +  + +  +      +++G++  ++ +EA  L +E  + G          L  + +
Sbjct: 395 FYKKMESLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGLANVFICNTILSWLCK 454

Query: 289 MGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKA 348
            G I  A E LR+M       NV  Y +               V +A+  +    L    
Sbjct: 455 QGKIDKATELLRKMESRGIGPNVVSYNN---------------VMLAHCRKKNMDLARTV 499

Query: 349 LANTLDEW-SPE--VVSLLADAKFV-WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTH 404
            +N L++   P     S+L D  F     + V +V+    S     +    V YQ     
Sbjct: 500 FSNMLEKGLKPNNYTYSILIDGCFKNHDEQNVLEVVNQMTSSNIEVN---GVVYQ----- 551

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL--IIDFYGISKKADAALK 462
                  ++  L + G       L+A +  +  R   S +    IID +    + D A+ 
Sbjct: 552 ------TIINGLCKVGQTSKARELLANMIEE-KRFCVSCMSYNSIIDGFIKEGEMDYAVA 604

Query: 463 AFHDDRTLCG-PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL 521
           A+ +   +C   IS    ++ Y+SL+  L K  R   A+ + +EM   G+  D+  +  L
Sbjct: 605 AYEE---MCANGISPN--VITYTSLMDGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGAL 659

Query: 522 MYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKK 581
           ++ F  + + +    LFS + + G+ P   ++  LI  +       NL    A  +L KK
Sbjct: 660 IHGFCKKSNMESASALFSELLEEGLNPSQPVYNSLISGF------RNLGNMVAALDLYKK 713

Query: 582 SLWKEGRR 589
            L K+G R
Sbjct: 714 ML-KDGLR 720


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 66/138 (47%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F  L+      G ++ V+  +++   R    +  +YN++++  +K+GK  EA+   +Q
Sbjct: 133 VTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQ 192

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G +PN   Y+ +I+     G++D A  VF  +           Y  L+ G+  +ER
Sbjct: 193 MEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIER 252

Query: 258 FDEAKSLLNEMRDDGKFP 275
            +EA  LL+E    G  P
Sbjct: 253 IEEAVQLLDETLRKGLVP 270



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 110/251 (43%), Gaps = 15/251 (5%)

Query: 71  IVTHALRSAPNADSALSI---MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD 127
           ++ ++L  +  A+ AL     ME +   PN   N STL  +     + Q + E +++  D
Sbjct: 172 VIINSLSKSGKANEALGFLKQMEKVGCVPNVV-NYSTL--IDGYCLRGQMD-EARSVF-D 226

Query: 128 ISSSKFLNVSV-NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
           +  SK    +V  + +LM  Y     +E  +   +E  ++  +    ++  ++S   + G
Sbjct: 227 LMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAG 286

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
           +   A + FR +   G  PN  TY V+++ L   G L+ A  +F  +    +K     Y 
Sbjct: 287 RPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYT 346

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREM--- 302
           IL++      +  + K L + + D+G  P      AL   + + G I  A++  R+M   
Sbjct: 347 ILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEED 406

Query: 303 --LPDKRIKNV 311
              PDK   NV
Sbjct: 407 GCTPDKCAYNV 417



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 88/213 (41%), Gaps = 22/213 (10%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   +VY    ++  L++ G        + ++   G          +ID Y +  + D A
Sbjct: 162 GLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEA 221

Query: 461 LKAFHDDRTL---CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
              F  D  +   C P      +  Y+SL+    K +R  +A+ +L+E +  G+VPD+ T
Sbjct: 222 RSVF--DLMVSKGCTPN-----VYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVT 274

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LS 565
           F+ ++      G     Q+LF  +  +G  P+   + VL+   CK+            + 
Sbjct: 275 FTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQ 334

Query: 566 NSNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
            S + P+     +L  SL K G+ K+   +  R
Sbjct: 335 RSTVKPNLVIYTILIDSLCKCGKIKDGKELFSR 367



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 88/464 (18%), Positives = 166/464 (35%), Gaps = 83/464 (17%)

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
           K L   V F  L       G  E V+    E           S +I+++ +    +    
Sbjct: 57  KPLPCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILINCFCHLHRVDFG 116

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
           +    +++  G  P+  T+T ++  L   GK+D  + ++  + +  ++     Y +++  
Sbjct: 117 LSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINS 176

Query: 252 FVGVERFDEAKSLLNEMRDDGKFPGRA-MRVALERMQEMGFIQGANEFLREMLPDKRIKN 310
                + +EA   L +M   G  P        ++     G +  A      M+      N
Sbjct: 177 LSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPN 236

Query: 311 VRYYE---DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADA 367
           V  Y    +G    E          RI   VQL      K L        P++V+     
Sbjct: 237 VYTYTSLMNGYCKIE----------RIEEAVQLLDETLRKGLV-------PDIVT----- 274

Query: 368 KFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDR 427
            F      +C+  R    P  A   F ++    G+T ++     +L  L +HG++E    
Sbjct: 275 -FTTIISGLCRAGR----PLAAQQLFRYICAH-GHTPNIMTYGVLLDGLCKHGNLEEAFA 328

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLL 487
           L  +++        ST++                                  +++Y+ L+
Sbjct: 329 LFQEMQR-------STVK--------------------------------PNLVIYTILI 349

Query: 488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE 547
            +L KC +  D   +   +I  G+ P+V T++ L+     +G      KLF  + ++G  
Sbjct: 350 DSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCT 409

Query: 548 PDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELL 579
           PD   + V+IQ + ++            + N     DAAT+ LL
Sbjct: 410 PDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRGFSADAATRALL 453



 Score = 39.3 bits (90), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 24/114 (21%)

Query: 496 DFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV 555
           DF  ++VL +++  G+ P + TF+ L+    ++G    V  L+  +   G++P+ Y + V
Sbjct: 114 DF-GLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNV 172

Query: 556 LIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA 609
           +I                        SL K G+  EA    ++ EK+  VP++ 
Sbjct: 173 IIN-----------------------SLSKSGKANEALGFLKQMEKVGCVPNVV 203


>gi|414876286|tpg|DAA53417.1| TPA: hypothetical protein ZEAMMB73_373649 [Zea mays]
          Length = 561

 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 84/393 (21%), Positives = 159/393 (40%), Gaps = 31/393 (7%)

Query: 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
            K G+  EA + FR + D G  PN  TY ++I  L   G ++ AL +F  +    I+ T 
Sbjct: 62  GKDGRYREAEKLFRGMADRGLDPNEVTYAILIHSLCKRGMMEDALCMFDRMREKGIRMTV 121

Query: 243 KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLRE 301
             Y  L+ G+     F +A+ LLNEM   G  P  A    L   +   G +  A E  RE
Sbjct: 122 YPYNSLINGYCKHNNFHQARGLLNEMVAKGLTPSPASYSPLIAGLCRKGDLASAMELHRE 181

Query: 302 MLPDKRIKNV--------RYYEDGSDDDEDE-----NDDNNSGVRIAYGVQLKPWLDPKA 348
           M  +    NV         + +DG+ D+         + +     + + V ++ +     
Sbjct: 182 MTRNAVSGNVYTFTALISGFCKDGNMDEATRLFHKMMESSLVPNEVTFNVMIEGYCRVGN 241

Query: 349 LANTLDEWSPEVVSLLADAKFVWTT--RLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDV 406
           +      +   +   L    + + +   +VC  L   K+ E     F           + 
Sbjct: 242 IRKAFQLYDQMLDRGLTPDNYTYRSLISVVCLTLGAMKAKE-----FVADLENNCAVLNS 296

Query: 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFS-TIRLIIDFYGISKKADAALKAFH 465
           ++L  ++    + G  E    ++ K    G  LP S T    +D+     + + A K  H
Sbjct: 297 FSLTALMHGFCKEGSAE----ILCKEMLAGHFLPNSYTYNCFLDYLANEGELEKA-KVLH 351

Query: 466 DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF 525
               L G ++     + +++L++      +   AI+++++   SG  PD  ++S ++   
Sbjct: 352 -AAMLEGCLAN---TVTFNTLIKGFCMAGQIQGAIDLMQKNTESGFFPDCISYSTIINEL 407

Query: 526 ALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
              GD     +L++ +   G++PD   + +LI+
Sbjct: 408 CKVGDTNKAFELWNEMLYKGLKPDIVAYTILIR 440



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 80/428 (18%), Positives = 150/428 (35%), Gaps = 50/428 (11%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L K  R  E + L   ++        V +  L+      G +E  L  ++  R++   ++
Sbjct: 61  LGKDGRYREAEKLFRGMADRGLDPNEVTYAILIHSLCKRGMMEDALCMFDRMREKGIRMT 120

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
              YN +++ Y K     +A     +++ +G  P+  +Y+ +I  L   G L SA+E+  
Sbjct: 121 VYPYNSLINGYCKHNNFHQARGLLNEMVAKGLTPSPASYSPLIAGLCRKGDLASAMELHR 180

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMG 290
            +    +      +  L+ GF      DEA  L ++M +    P      V +E    +G
Sbjct: 181 EMTRNAVSGNVYTFTALISGFCKDGNMDEATRLFHKMMESSLVPNEVTFNVMIEGYCRVG 240

Query: 291 FIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALA 350
            I+ A +   +ML                 D     DN +   +   V L          
Sbjct: 241 NIRKAFQLYDQML-----------------DRGLTPDNYTYRSLISVVCL---------- 273

Query: 351 NTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFK--------SPETAWHFFCWVAYQPGY 402
                     +  +   +FV      C VL  F           E +    C       +
Sbjct: 274 ---------TLGAMKAKEFVADLENNCAVLNSFSLTALMHGFCKEGSAEILCKEMLAGHF 324

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALK 462
             + Y     L  LA  G +E    L A +  +G      T   +I  + ++ +   A+ 
Sbjct: 325 LPNSYTYNCFLDYLANEGELEKAKVLHAAML-EGCLANTVTFNTLIKGFCMAGQIQGAID 383

Query: 463 AFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
               +         F   + YS+++  L K      A  +  EM++ G+ PD+  ++ L+
Sbjct: 384 LMQKNTE----SGFFPDCISYSTIINELCKVGDTNKAFELWNEMLYKGLKPDIVAYTILI 439

Query: 523 YHFALQGD 530
               + G+
Sbjct: 440 RWCNIHGE 447



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 40/196 (20%), Positives = 80/196 (40%), Gaps = 6/196 (3%)

Query: 43  IDSIRLAVRSNSSNSLSSLLNDRLLDPFIVT-----HALRSAPNADSALSIMEALKSNPN 97
           ID +    R   +  L   + DR LDP  VT     H+L      + AL + + ++    
Sbjct: 58  IDRLGKDGRYREAEKLFRGMADRGLDPNEVTYAILIHSLCKRGMMEDALCMFDRMREK-G 116

Query: 98  FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVL 157
                   ++L     K    H+ + L+ ++ +        ++  L+      GDL   +
Sbjct: 117 IRMTVYPYNSLINGYCKHNNFHQARGLLNEMVAKGLTPSPASYSPLIAGLCRKGDLASAM 176

Query: 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217
               E  + A   +  ++  ++S + K G   EA   F ++++   +PN  T+ VMIE  
Sbjct: 177 ELHREMTRNAVSGNVYTFTALISGFCKDGNMDEATRLFHKMMESSLVPNEVTFNVMIEGY 236

Query: 218 VNLGKLDSALEVFSAL 233
             +G +  A +++  +
Sbjct: 237 CRVGNIRKAFQLYDQM 252



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+SL+    K      A  +L EM+  G+ P   ++S L+     +GD     +L   + 
Sbjct: 124 YNSLINGYCKHNNFHQARGLLNEMVAKGLTPSPASYSPLIAGLCRKGDLASAMELHREMT 183

Query: 543 QNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRK 590
           +N V  + Y F  LI  +CK             +  S+L+P+  T  ++ +   + G  +
Sbjct: 184 RNAVSGNVYTFTALISGFCKDGNMDEATRLFHKMMESSLVPNEVTFNVMIEGYCRVGNIR 243

Query: 591 EA 592
           +A
Sbjct: 244 KA 245


>gi|15226343|ref|NP_178283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216739|sp|Q9ZUA2.1|PP141_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g01740
 gi|4220475|gb|AAD12698.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250397|gb|AEC05491.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 86/400 (21%), Positives = 167/400 (41%), Gaps = 59/400 (14%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y+  +  + K+G+   A+++F  +  +   PN  T+T +I+     G L+ A+ ++  +
Sbjct: 165 TYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEM 224

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFI 292
             +R+      Y  L++GF        A+ + + M +D   P   +   + +   + G  
Sbjct: 225 RRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDS 284

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRI---AYGVQLKPWLDPKAL 349
             A +FL +ML                         N G+R+   AYGV +        L
Sbjct: 285 DNAMKFLAKML-------------------------NQGMRLDITAYGVIISGLCGNGKL 319

Query: 350 ANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPE-----TAWHFFCWVAYQPGYTH 404
               +       S L     ++TT +      +FKS         +H      ++P    
Sbjct: 320 KEATEIVEDMEKSDLVPDMVIFTTMMN----AYFKSGRMKAAVNMYHKLIERGFEP---- 371

Query: 405 DVYALEKMLTILARHGHV-ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKA 463
           DV AL  M+  +A++G + E +     +  +D M        ++ID   + K+ D     
Sbjct: 372 DVVALSTMIDGIAKNGQLHEAIVYFCIEKANDVM------YTVLID--ALCKEGD----- 418

Query: 464 FHDDRTLCGPISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           F +   L   IS+  L+    +Y+S +  L K     DA  +   M+  G++ D+  ++ 
Sbjct: 419 FIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTRMVQEGLLLDLLAYTT 478

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
           L+Y  A +G     +++F  +  +G+ PD+ +F +LI+AY
Sbjct: 479 LIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDLLIRAY 518



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 67/138 (48%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F  L+  Y  +GDLE+ +S + E R+    L+  +Y  ++  + K G+   A E + +
Sbjct: 199 VTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSR 258

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++++   PNS  YT +I+     G  D+A++  + +    ++     Y +++ G  G  +
Sbjct: 259 MVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGK 318

Query: 258 FDEAKSLLNEMRDDGKFP 275
             EA  ++ +M      P
Sbjct: 319 LKEATEIVEDMEKSDLVP 336


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 106/241 (43%), Gaps = 4/241 (1%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + H L      D A+S++E + S+     N  T   L   L K +R  +   L+  +   
Sbjct: 298 LIHGLCLKGKLDKAVSLLERMVSSKCIP-NDVTYGTLINGLVKQRRATDAVRLLSSMEER 356

Query: 132 KF-LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
            + LN  + +  L+      G  E  +S W +  ++    +   Y++++    + GK  E
Sbjct: 357 GYHLNQHI-YSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNE 415

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A E   ++I  G +PN+ TY+ +++     G  + A++V+  +      R    Y +L++
Sbjct: 416 AKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLID 475

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIK 309
           G  GV R  EA  + ++M   G  P   A    ++ +  +G +  A +   EML  +  K
Sbjct: 476 GLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPK 535

Query: 310 N 310
           +
Sbjct: 536 S 536



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 111/512 (21%), Positives = 213/512 (41%), Gaps = 66/512 (12%)

Query: 92  LKSNP---NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS 148
            KS P   +F    STL ++    A S     ++ L+  I     + +  +F+ + + Y 
Sbjct: 64  FKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVIIERSFIVVFRAYG 123

Query: 149 TS----GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA- 203
            +      ++L     +E+R +    S +S+N V++V    G     +E +  V++    
Sbjct: 124 KAHLPDKAVDLFHRMVDEFRCKR---SVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMN 180

Query: 204 ---IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
               PN  ++ ++I+ L  L  +D A+EVF  +P  +       Y  L++G    ER DE
Sbjct: 181 MNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDE 240

Query: 261 AKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGA-----NEFLREMLPDKRIKNVRYY 314
           A  LL+EM+ +G  P   +  V ++ + + G +        N FL+  +P++   N   +
Sbjct: 241 AVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIH 300

Query: 315 EDGSDDDEDEN--------------DDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEV 360
                   D+               +D   G  I   V+ +   D   L ++++E    +
Sbjct: 301 GLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHL 360

Query: 361 VSLLADAKFVWTTRLVCKVLRHFKSPE--TAWHFFCWVAYQPGYTHDVYALEKMLTILAR 418
                  + +++  L+  + +  K+ E  + W        +P     VY++  ++  L R
Sbjct: 361 ------NQHIYSV-LISGLFKEGKAEEAMSLWRKMAEKGCKPNIV--VYSV--LVDGLCR 409

Query: 419 HGHV----ELVDRLIAKLRSDGMRLPFSTIRLIIDFY--GISKKADAALKAFHDDRTLCG 472
            G      E+++R+IA   S  +   ++   L+  F+  G+ ++A    K    D+T C 
Sbjct: 410 EGKPNEAKEILNRMIA---SGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEM--DKTGCS 464

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
             +KF     YS L+  L    R  +A+ V  +M+  GI PD   +S ++      G   
Sbjct: 465 R-NKF----CYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMD 519

Query: 533 IVQKLF-SMVRQN--GVEPDAYMFKVLIQAYC 561
              KL+  M+ Q     +PD   + +L+   C
Sbjct: 520 AALKLYHEMLCQEEPKSQPDVVTYNILLDGLC 551


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 87/212 (41%), Gaps = 31/212 (14%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           D  +   +LT L R GH    DR  A LR+  +  P    R     Y +       ++A 
Sbjct: 76  DAVSYNTVLTALCRRGHH---DRAGALLRAMSLE-PHPACRPNAVSYTV------LMRAL 125

Query: 465 HDDRTLCGPISKFKLM---------LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
             DR     +   + M         + Y +L+R L        A+ ++ EM  SGI P+V
Sbjct: 126 CADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNV 185

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------Y 563
             +S L+  +   G  + V K+F  + + G+EPD  M+  LI + CK             
Sbjct: 186 VVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDM 245

Query: 564 LSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
           +    L P+  T  +L   + KEG  KEA  V
Sbjct: 246 MVRRGLEPNVVTYNVLINCMCKEGSVKEAIGV 277



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 1/130 (0%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++N V+      G+  +A +    + + G + N  TY ++I  L+ + K+  A+E+   +
Sbjct: 329 TFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEM 388

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA-LERMQEMGFI 292
             + ++  S  Y IL++GF  + + D A+ LL+ MRD G  P     +  L  M E G +
Sbjct: 389 TSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMM 448

Query: 293 QGANEFLREM 302
           + A     EM
Sbjct: 449 ERARNLFNEM 458



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 81/198 (40%), Gaps = 1/198 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           ++  AL +   AD A+ ++ +++S      +  T   L   L  +    +   L+G++  
Sbjct: 120 VLMRALCADRLADQAVGLLRSMRS-AGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCE 178

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           S      V + +L+Q Y  SG  E V   + E  ++        Y  ++    K GK  +
Sbjct: 179 SGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKK 238

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A      ++  G  PN  TY V+I  +   G +  A+ V   +    +      Y  L++
Sbjct: 239 AHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIK 298

Query: 251 GFVGVERFDEAKSLLNEM 268
           G   V   DEA  LL EM
Sbjct: 299 GLSDVLEMDEAMWLLEEM 316



 Score = 43.5 bits (101), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 50/242 (20%), Positives = 105/242 (43%), Gaps = 12/242 (4%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHAL--------RSAPNADSALSIMEALK 93
           LIDS+    ++  ++ +  ++  R L+P +VT+ +         S   A   L  M    
Sbjct: 226 LIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKG 285

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
             P+     + +  L+ VL   +    L+ ++   +  K  NV V F +++Q     G +
Sbjct: 286 VAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKP-NV-VTFNSVIQGLCDIGRM 343

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
                      +   +++  +YN+++    +  K  +A+E   ++   G  P+S TY+++
Sbjct: 344 RQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSIL 403

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           I+    + ++D A ++ S +    I+     Y+ L+         + A++L NEM  D  
Sbjct: 404 IKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEM--DNN 461

Query: 274 FP 275
           FP
Sbjct: 462 FP 463



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 38/78 (48%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS+++    K      A  +L+ ++  G+ PD  T+S ++  FA  GD +    +   + 
Sbjct: 469 YSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMT 528

Query: 543 QNGVEPDAYMFKVLIQAY 560
            +G  PD  +F  LIQ Y
Sbjct: 529 ASGFLPDVAVFDSLIQGY 546



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 68/165 (41%), Gaps = 18/165 (10%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +++Y+ L+ +L K  +   A  V++ M+  G+ P+V T++ L+     +G  K    +  
Sbjct: 220 VVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLK 279

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM--------------PDAATKELLKKSLWK 585
            + + GV PD   +  LI+     L     M              P+  T   + + L  
Sbjct: 280 KMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCD 339

Query: 586 EGRRKEAAAVEERCEKINDVPSLALRGHIWAVSSADLTRVHSIYR 630
            GR ++A  V    E+   + +L      + +    L RVH + +
Sbjct: 340 IGRMRQAFQVRAMMEETGCMVNLV----TYNLLIGGLLRVHKVRK 380



 Score = 39.3 bits (90), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 43/83 (51%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y+ L+  L +  +   A+ +++EM   G+ PD  T+S L+  F         + L S
Sbjct: 362 LVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLS 421

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK 562
            +R  G+EP+ + +  L+ A C+
Sbjct: 422 TMRDRGIEPELFHYIPLLVAMCE 444


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 86/193 (44%), Gaps = 1/193 (0%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L K  + +E + L G+I         V+F  L+  Y  SG+L+          +      
Sbjct: 235 LCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPD 294

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
             +Y+++++   K G+  +A + F ++ D G +PN  T+T +I      G+ D  +E++ 
Sbjct: 295 VFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQ 354

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMG 290
            +    +K     Y  L+ G   V    EAK L+ EM   G  P +    + ++   + G
Sbjct: 355 QMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEG 414

Query: 291 FIQGANEFLREML 303
            ++ A E  +EM+
Sbjct: 415 DLESALEIRKEMV 427



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 80/178 (44%), Gaps = 1/178 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F  L+  +  +G  +L +  + +  ++       +YN +++   K G   EA +   +
Sbjct: 331 VTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIE 390

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G  P+  TYT++I+     G L+SALE+   +    I+  +  +  L+ GF    +
Sbjct: 391 MTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQ 450

Query: 258 FDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
             EA+  L EM + G  P  A   + +    + G ++   + L+EM  D  +  V  Y
Sbjct: 451 VIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTY 508



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 89/223 (39%), Gaps = 21/223 (9%)

Query: 389 AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII 448
           AW F+  +    GY  DV     ++  L +   +     L  ++   G+R    +   +I
Sbjct: 209 AWAFYEEI-LDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLI 267

Query: 449 DFYGISKKADAA--LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
           + Y  S   D    LK F  +  +      F  +  YS L+  L K  +  DA  +  EM
Sbjct: 268 NGYCKSGNLDQGFRLKRFMMENRV------FPDVFTYSVLINGLCKEGQLDDANKLFLEM 321

Query: 507 IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY--- 563
              G+VP+  TF+ L+    + G   +  +++  + + GV+PD   +  LI   CK    
Sbjct: 322 CDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDL 381

Query: 564 ---------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
                    ++   L PD  T  +L     KEG  + A  + +
Sbjct: 382 REAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRK 424



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 102/271 (37%), Gaps = 31/271 (11%)

Query: 382 HFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS-DGMRLP 440
           H  SP +   FF W++ Q  +   +++   M   L  H  +     L+  + S  G    
Sbjct: 79  HSLSPPSLLSFFKWLSTQHHFRLSIHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGKNSA 138

Query: 441 FSTIRLIIDFYGISKKA---DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDF 497
            S    +++  G  +        + A+ D       I  F+L+  + +L      C   F
Sbjct: 139 SSVFTSVLEARGTHQSNLVFSVLMNAYTDSGYFSDAIQCFRLVRKH-NLQIPFHSCGYLF 197

Query: 498 DAINVL----------EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE 547
           D +  L          EE++  G  PDV  F+ LM+    +      Q LF  + + G+ 
Sbjct: 198 DRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLR 257

Query: 548 PDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
           P    F  LI  YCK            ++  + + PD  T  +L   L KEG+  +A  +
Sbjct: 258 PTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKL 317

Query: 596 -EERCEK---INDVPSLALRGHIWAVSSADL 622
             E C++    NDV    L         ADL
Sbjct: 318 FLEMCDRGLVPNDVTFTTLINGHCVTGRADL 348



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 96/207 (46%), Gaps = 29/207 (14%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD-- 458
           G   DV     ++  L + G +    +L+ ++   G++    T  ++ID  G  K+ D  
Sbjct: 360 GVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLID--GCCKEGDLE 417

Query: 459 AALKAFHDDRTLCGPISKFKLML---LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
           +AL+   +       + K  + L    +++L+    +  +  +A   L EM+ +GI PD 
Sbjct: 418 SALEIRKE-------MVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDD 470

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--YLSNSNLM--- 570
            T++ +++ F  +GD K   KL   ++ +G  P    + VL+   CK   + N+N++   
Sbjct: 471 ATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDA 530

Query: 571 -------PDAATKE-LLKKSL--WKEG 587
                  PD  T   LL+++L  WK+G
Sbjct: 531 MLNLGVVPDDITYNILLERTLQAWKQG 557


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 95/453 (20%), Positives = 174/453 (38%), Gaps = 54/453 (11%)

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
            + E+ +     +  SYNIV+    + G+  EA      +  +G  P+  +Y+ ++    
Sbjct: 233 VFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYC 292

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA 278
             G+LD   ++   +    +K  S  Y  ++     + +  EA+   +EM   G  P   
Sbjct: 293 RFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTV 352

Query: 279 MRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYG 337
           +   L +   + G I+ A++F              +YE  S    D   D  +   I  G
Sbjct: 353 VYTTLIDGFCKRGDIRAASKF--------------FYEMHS---RDITPDVLTYTAIISG 395

Query: 338 -VQLKPWLDPKALANTL--DEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFC 394
             Q+   ++   L + +      P+ V+      F       CK      +     H   
Sbjct: 396 FCQIGDMVEAGKLFHEMFCKGLEPDSVT------FTELINGYCKAGHMKDAFRVHNHMI- 448

Query: 395 WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS 454
               Q G + +V     ++  L + G ++  + L+ ++   G++    T   I++    S
Sbjct: 449 ----QAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKS 504

Query: 455 KKADAALKAFHDDRTLCGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
              + A+K       L G      L    + Y++L+    K      A  +L+EM+  G+
Sbjct: 505 GNIEEAVK-------LVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGL 557

Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC---------- 561
            P + TF+ LM  F L G  +  +KL + +   G+ P+A  F  L++ YC          
Sbjct: 558 QPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATA 617

Query: 562 --KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
             K + +  + PD  T E L K   K    KEA
Sbjct: 618 IYKDMCSRGVGPDGKTYENLVKGHCKARNMKEA 650



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 89/436 (20%), Positives = 169/436 (38%), Gaps = 33/436 (7%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           +++  ++  Y   G+L+ V       +++    ++  Y  ++ +  +  K  EA E F +
Sbjct: 282 ISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSE 341

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +I +G +P++  YT +I+     G + +A + F  +    I      Y  ++ GF  +  
Sbjct: 342 MIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGD 401

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
             EA  L +EM   G  P       L     + G ++ A      M+      NV  Y  
Sbjct: 402 MVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTT 461

Query: 317 GSDD--DEDENDDNNSGVRIAYGVQLKP-WLDPKALANTLDEWS--PEVVSLLAD----- 366
             D    E + D  N  +   + + L+P      ++ N L +     E V L+ +     
Sbjct: 462 LIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG 521

Query: 367 --AKFVWTTRLV---CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGH 421
             A  V  T L+   CK     K+ E             G    +     ++     HG 
Sbjct: 522 LNADTVTYTTLMDAYCKSGEMDKAQEILKEML-----GKGLQPTIVTFNVLMNGFCLHGM 576

Query: 422 VELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC----GPISKF 477
           +E  ++L+  + + G+    +T   ++  Y I     AA   + D   +C    GP  K 
Sbjct: 577 LEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKD---MCSRGVGPDGK- 632

Query: 478 KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL 537
                Y +L++   K +   +A  + +EM   G    V T+S L+  F  +      +++
Sbjct: 633 ----TYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREV 688

Query: 538 FSMVRQNGVEPDAYMF 553
           F  +R+ G+  D  +F
Sbjct: 689 FDQMRREGLAADKEIF 704



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/248 (20%), Positives = 102/248 (41%), Gaps = 14/248 (5%)

Query: 29  FTNKLALYLRRAQLIDSIRL---AVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSA 85
           FT  +  Y +   + D+ R+    +++  S ++ +     L+D       L SA   +  
Sbjct: 424 FTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTT--LIDGLCKEGDLDSA---NEL 478

Query: 86  LSIMEALKSNPN-FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
           L  M  +   PN F++N     ++   L KS    E   L+G+  ++     +V +  LM
Sbjct: 479 LHEMWKIGLQPNIFTYN-----SIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLM 533

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204
             Y  SG+++       E   +    +  ++N++M+ +   G   +  +    ++ +G  
Sbjct: 534 DAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIA 593

Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL 264
           PN+ T+  +++       L +A  ++  +    +    K Y  LV+G        EA  L
Sbjct: 594 PNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFL 653

Query: 265 LNEMRDDG 272
             EM+  G
Sbjct: 654 FQEMKGKG 661



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 90/250 (36%), Gaps = 56/250 (22%)

Query: 358 PEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILA 417
           PEV      A +      VC++ R     + A H    +  + GYT DV +   ++    
Sbjct: 238 PEVGVCWNVASYNIVIHFVCQLGR----IKEAHHLLLLMELK-GYTPDVISYSTVVNGYC 292

Query: 418 RHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKF 477
           R G ++ V +LI  ++  G++ P S I                                 
Sbjct: 293 RFGELDKVWKLIEVMKRKGLK-PNSYI--------------------------------- 318

Query: 478 KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL 537
                Y S++  L +  +  +A     EMI  GI+PD   ++ L+  F  +GD +   K 
Sbjct: 319 -----YGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKF 373

Query: 538 FSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWK 585
           F  +    + PD   +  +I  +C+             +    L PD+ T   L     K
Sbjct: 374 FYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCK 433

Query: 586 EGRRKEAAAV 595
            G  K+A  V
Sbjct: 434 AGHMKDAFRV 443



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 39/193 (20%), Positives = 74/193 (38%), Gaps = 1/193 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D    ++E +K       N     ++  +L +  +  E +    ++     L  +V +  
Sbjct: 298 DKVWKLIEVMKRK-GLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTT 356

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  +   GD+      + E   R       +Y  ++S + + G   EA + F ++  +G
Sbjct: 357 LIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKG 416

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+S T+T +I      G +  A  V + +           Y  L++G       D A 
Sbjct: 417 LEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSAN 476

Query: 263 SLLNEMRDDGKFP 275
            LL+EM   G  P
Sbjct: 477 ELLHEMWKIGLQP 489



 Score = 43.1 bits (100), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 30/139 (21%), Positives = 55/139 (39%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           SV F  L+  Y  +G ++      N   Q     +  +Y  ++    K G    A E   
Sbjct: 421 SVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLH 480

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           ++   G  PN  TY  ++  L   G ++ A+++        +   +  Y  L++ +    
Sbjct: 481 EMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSG 540

Query: 257 RFDEAKSLLNEMRDDGKFP 275
             D+A+ +L EM   G  P
Sbjct: 541 EMDKAQEILKEMLGKGLQP 559


>gi|147825385|emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
          Length = 821

 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 106/521 (20%), Positives = 205/521 (39%), Gaps = 73/521 (14%)

Query: 67  LDPFIVTHAL------RSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHE 120
           L P +VT+ +      +   + +  L +++ ++SN     ++ T   + +   +     E
Sbjct: 240 LSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSN-GLEFDEFTCSTVISACGREGLLDE 298

Query: 121 LKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS 180
            +     + S  ++  +  + +L+Q +  +G     LS   E  +        +YN +++
Sbjct: 299 ARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVA 358

Query: 181 VYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR 240
            Y + G + E  +    +I +G +PN+ TYT +I      GK D AL  F  +       
Sbjct: 359 AYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVP 418

Query: 241 TSKQYLILVEGFVGVE-RFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEF 298
               Y  ++ G +G + R +E   +L +MR +G  P        L      G  +  N  
Sbjct: 419 NVCTYNAIL-GMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRV 477

Query: 299 LREML-----PDKRIKNV---RYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDP---- 346
            REM      P++   N     Y   GS  D          V   Y   +K    P    
Sbjct: 478 FREMKSCGFEPNRDTFNALIGAYGRCGSQID----------VVKMYEEMIKAGFTPCVTT 527

Query: 347 -KALANTL---DEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGY 402
             AL N L    +W     S++ D K            + FK  ET++            
Sbjct: 528 YNALLNALARRGDWEA-AESVILDMK-----------SKGFKPNETSYSL---------- 565

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL- 461
                    ML   A+ G+   ++++  ++  +G   P   +   +      ++A   + 
Sbjct: 566 ---------MLNCYAKGGNGRGIEKIEEEI-YNGHIFPSWILLRTLVLANFKRRALMGME 615

Query: 462 KAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL 521
           +AF +    C    K  L +L++S+L    K K    A  +L  +  SG+ PD+ T++ L
Sbjct: 616 RAFQE---FCKHGYKPDL-VLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSL 671

Query: 522 MYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           M  +A  G+    +++   ++++G +PD   +  +I+ +C+
Sbjct: 672 MDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCR 712



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 86/192 (44%), Gaps = 19/192 (9%)

Query: 379 VLRHFK-----SPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
           VL +FK       E A+  FC   Y+P    D+     ML+I A++   +    ++  +R
Sbjct: 602 VLANFKRRALMGMERAFQEFCKHGYKP----DLVLFNSMLSIFAKNKMYDRAHEMLRLIR 657

Query: 434 SDGMRLPFSTIRLIIDFY---GISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTL 490
             G++    T   ++D Y   G   K +  LK           +S       Y+++++  
Sbjct: 658 ESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVS-------YNTVIKGF 710

Query: 491 TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA 550
            +     +AI  L EM  SGI P + T++  +  ++ +G    V+++ S + Q+   P+ 
Sbjct: 711 CRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDCRPNE 770

Query: 551 YMFKVLIQAYCK 562
             +K+++  YCK
Sbjct: 771 LTYKIVVDGYCK 782



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/95 (23%), Positives = 45/95 (47%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN +M +YA+ G+ ++  E  + +   G  P+  +Y  +I+     G +  A+   S +
Sbjct: 667 TYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEM 726

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
            +  I+     Y   V G+ G   F E + +++ M
Sbjct: 727 TISGIRPCIVTYNTFVAGYSGKGMFSEVEEVISYM 761



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 84/191 (43%), Gaps = 13/191 (6%)

Query: 105 LHALATVLAKSQ---RNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL---ELVLS 158
            +++ ++ AK++   R HE+  LI +      L   V + +LM  Y+  G+    E +L 
Sbjct: 633 FNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDL---VTYNSLMDMYARGGECWKGEEILK 689

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
              +   +  L+S   YN V+  + + G   EA+ T  ++   G  P   TY   +    
Sbjct: 690 GIQKSGGKPDLVS---YNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYS 746

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD-DGKFPGR 277
             G      EV S +     +     Y I+V+G+   +++ EA   ++ + + D  F  +
Sbjct: 747 GKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKGKKYKEAMDFVSNITEMDKSFDDQ 806

Query: 278 AMRVALERMQE 288
           ++R    R++E
Sbjct: 807 SLRRLTFRIRE 817



 Score = 42.7 bits (99), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 18/177 (10%)

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLL 487
           L+ ++RS+G+     T   +I   G     D A K F   ++       F     Y+SLL
Sbjct: 267 LLDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFT----YNSLL 322

Query: 488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG-DEKIVQKLFSMVRQNGV 546
           +   K     +A+++L+EM  +   PD+ T++ L+  +   G  E+    + +M+R+ G+
Sbjct: 323 QVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRK-GI 381

Query: 547 EPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKE 591
            P+A  +  +I AY K             +  S  +P+  T   +   L K+ R +E
Sbjct: 382 MPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEE 438



 Score = 42.0 bits (97), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 84/464 (18%), Positives = 176/464 (37%), Gaps = 80/464 (17%)

Query: 108 LATVLAKSQRNHELKTLIGDISSSKF-LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR 166
           +  +L +  ++     L+ +IS  ++ L+V   +  ++  YS  G  E  ++ + + R+ 
Sbjct: 180 MVRILGRESQHSVALRLLDEISVEEYSLDVRA-WTTILHAYSRIGKYERAITMFEKMRKT 238

Query: 167 AKLLSTESYNIVMSVYAKTGKNFEAV-ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
               +  +YN+++ VY K G+++  +     ++   G   +  T + +I      G LD 
Sbjct: 239 GLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFTCSTVISACGREGLLDE 298

Query: 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-E 284
           A + F+ L        +  Y  L++ F     + EA S+L EM  +   P       L  
Sbjct: 299 ARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVA 358

Query: 285 RMQEMGFIQGANEFLREMLPDKRIKNVRYYED-----GSDDDEDENDDNNSGVRIAYGVQ 339
                GF +   +F+  M+    + N   Y       G    ED+         +++  Q
Sbjct: 359 AYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDK--------ALSFFRQ 410

Query: 340 LKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPET-AWHFFCWVAY 398
           +K   +   + N    ++  +  L   ++      ++C +  +  +P +  W+       
Sbjct: 411 MK---ESGCVPNVCT-YNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWN------- 459

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
                        ML +    G  + V+R+  +++S G      T   +I  YG      
Sbjct: 460 ------------TMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYG------ 501

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
                       CG  S+  ++ +Y                    EEMI +G  P V T+
Sbjct: 502 -----------RCG--SQIDVVKMY--------------------EEMIKAGFTPCVTTY 528

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           + L+   A +GD +  + +   ++  G +P+   + +++  Y K
Sbjct: 529 NALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAK 572


>gi|255661006|gb|ACU25672.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 376

 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 99/218 (45%), Gaps = 22/218 (10%)

Query: 396 VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI--RLIIDFYGI 453
           +A Q G   D +A   M+  L +   +E    ++  +   G + P + +   LI    G 
Sbjct: 119 IAEQKGGVLDAFAYSAMINALCKESKLEKAVSVLNGMIRSGCK-PNTHVYNALIKGLIGA 177

Query: 454 SKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV 512
           SK+ DA ++ F +   T C P      +  YS L+  L K +R  +A ++++EM+  G+ 
Sbjct: 178 SKRDDA-VRIFREMGTTDCPPN-----IATYSILIDGLCKGERFGEAYDLVKEMLEKGLN 231

Query: 513 PDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK---------- 562
           P V T+S LM    L    ++  +L++ V + G +PD  M  +LI   C           
Sbjct: 232 PSVITYSLLMKGLCLGHKVEMALQLWNQVTKKGFKPDVQMHNILIHGLCSVGKTQLALSL 291

Query: 563 YLSNS--NLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
           YL  +  N  P+  T+  L +  +K+G  + A  +  R
Sbjct: 292 YLDMNRWNCAPNLVTQNTLMEGFYKDGNVRNALVIWAR 329



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 67/148 (45%)

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           ++ S F+  SV +  L+  +  +G +   L       Q+  +L   +Y+ +++   K  K
Sbjct: 85  MTKSGFVEDSVTYGILVHGFCKNGYINKSLHILEIAEQKGGVLDAFAYSAMINALCKESK 144

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
             +AV     +I  G  PN+  Y  +I+ L+   K D A+ +F  +           Y I
Sbjct: 145 LEKAVSVLNGMIRSGCKPNTHVYNALIKGLIGASKRDDAVRIFREMGTTDCPPNIATYSI 204

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           L++G    ERF EA  L+ EM + G  P
Sbjct: 205 LIDGLCKGERFGEAYDLVKEMLEKGLNP 232



 Score = 39.7 bits (91), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 80/194 (41%), Gaps = 3/194 (1%)

Query: 75  ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFL 134
            L  A   D A+ I   + +  +   N +T   L   L K +R  E   L+ ++   K L
Sbjct: 173 GLIGASKRDDAVRIFREMGTT-DCPPNIATYSILIDGLCKGERFGEAYDLVKEMLE-KGL 230

Query: 135 NVSV-NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE 193
           N SV  +  LM+       +E+ L  WN+  ++      + +NI++      GK   A+ 
Sbjct: 231 NPSVITYSLLMKGLCLGHKVEMALQLWNQVTKKGFKPDVQMHNILIHGLCSVGKTQLALS 290

Query: 194 TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
            +  +      PN  T   ++E     G + +AL +++ +    ++     Y I ++G  
Sbjct: 291 LYLDMNRWNCAPNLVTQNTLMEGFYKDGNVRNALVIWARILKNELQPDIISYNITLKGLC 350

Query: 254 GVERFDEAKSLLNE 267
              R  +A   L++
Sbjct: 351 SCNRISDAIWFLHD 364


>gi|15233383|ref|NP_193806.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75211707|sp|Q9SVH3.1|PP328_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g20740
 gi|5262214|emb|CAB45840.1| putative protein [Arabidopsis thaliana]
 gi|7268870|emb|CAB79074.1| putative protein [Arabidopsis thaliana]
 gi|332658957|gb|AEE84357.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 727

 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 107/248 (43%), Gaps = 24/248 (9%)

Query: 348 ALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY 407
           A     + W P VVS L   + V T  +V +VL+       A  FF W   Q GY HD  
Sbjct: 101 AFRKNRNHWGPSVVSELNKLRRV-TPSIVAEVLKLGNDAAVAAKFFHWAGKQKGYKHDFA 159

Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDD 467
           A       L R+GH    D+L   + S G         ++I  +  +++    L+ ++  
Sbjct: 160 AYNAFAYCLNRNGHFRAADQLPELMDSQGRPPSEKQFEILIRMHADNRR---GLRVYY-- 214

Query: 468 RTLCGPISKFKL---MLLYSSLLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLMY 523
             +   + KF     + LY+ ++  L K    FD A+ V E+    G+V +  TF  L+ 
Sbjct: 215 --VYEKMKKFGFKPRVFLYNRIMDALVK-NGYFDLALAVYEDFKEDGLVEESTTFMILVK 271

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSL 583
                G  + + ++   +R+N  +PD + +  +I+     +S  NL  DA+ +      +
Sbjct: 272 GLCKAGRIEEMLEILQRMRENLCKPDVFAYTAMIKT---LVSEGNL--DASLR------V 320

Query: 584 WKEGRRKE 591
           W E RR E
Sbjct: 321 WDEMRRDE 328



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 78/173 (45%), Gaps = 1/173 (0%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           +M     +G  +L L+ + ++++   +  + ++ I++    K G+  E +E  +++ +  
Sbjct: 234 IMDALVKNGYFDLALAVYEDFKEDGLVEESTTFMILVKGLCKAGRIEEMLEILQRMRENL 293

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+   YT MI+ LV+ G LD++L V+  +    IK     Y  LV G     R +   
Sbjct: 294 CKPDVFAYTAMIKTLVSEGNLDASLRVWDEMRRDEIKPDVMAYGTLVVGLCKDGRVERGY 353

Query: 263 SLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
            L  EM+       R + RV +E     G ++ A     +++    I ++  Y
Sbjct: 354 ELFMEMKGKQILIDREIYRVLIEGFVADGKVRSACNLWEDLVDSGYIADIGIY 406



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 74/169 (43%), Gaps = 3/169 (1%)

Query: 137 SVNFMN-LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF 195
           SV+  N LM+     GD++  LS + E R+      + SY+I +  + + G    A    
Sbjct: 506 SVSVYNILMEALYKMGDIQKSLSLFYEMRKLGFEPDSSSYSIAICCFVEKGDVKAACSFH 565

Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA-LEVFSALPLMRIKRTSKQYLILVEGFVG 254
            ++I+   +P+   Y  + + L  +G++D+  L V   L  +       +Y + V     
Sbjct: 566 EKIIEMSCVPSIAAYLSLTKGLCQIGEIDAVMLLVRECLGNVESGPMEFKYALTVCHVCK 625

Query: 255 VERFDEAKSLLNEMRDDGKFPGRAMRVA-LERMQEMGFIQGANEFLREM 302
               ++   +++EM  +G F    +  A +  M + G I+ A E   E+
Sbjct: 626 GSNAEKVMKVVDEMNQEGVFINEVIYCAIISGMSKHGTIKVAREVFTEL 674


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 119/290 (41%), Gaps = 24/290 (8%)

Query: 7   LPAVILSKAFTQLQTRSFVR---AP-----FTNKLALYLRRAQLIDSIRLAVRSNSSNSL 58
           L A IL++A     +RS +    AP         L   L RA L    R +   +  ++L
Sbjct: 75  LAAHILARARLFPHSRSLLSRLLAPGHHPHLAASLVDLLHRAALALGPRRSALPSVVDTL 134

Query: 59  SSLLNDR-LLDPFIVTHA----LRSAPNADSALSIMEALKSNPNF-----------SHNQ 102
            SLL DR LLD  ++  A    LR  PN  +   I+  L    +            + N 
Sbjct: 135 LSLLADRGLLDDAVLALARVRELRVPPNTRTCNHILLCLARERSSELAWRLFEQLPAPNV 194

Query: 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
            T + +   L K     E + L+  + +       V + +L+  Y   G+LE V     E
Sbjct: 195 FTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGE 254

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
            R         +YN +++ + K G+   A   F ++  EG + N  T++  ++     G 
Sbjct: 255 MRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGM 314

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +  A+++F+ + +  +K     Y  LV+G     R D+A  L NEM   G
Sbjct: 315 VREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQG 364



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 97/495 (19%), Positives = 195/495 (39%), Gaps = 53/495 (10%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           A + L+ M+A+  +P+      T ++L     K     E++ L+G++         V + 
Sbjct: 213 ARALLARMKAIGCSPDVV----TYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYN 268

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            L+  +   G +E   S + E ++   + +  +++  +  + K G   EA++ F Q+  +
Sbjct: 269 ALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMK 328

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G  PN  TYT +++     G+LD AL + + +    +      Y +LV+G     +  EA
Sbjct: 329 GMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEA 388

Query: 262 KSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDD 321
           + +   M   G    RA  +    +    F+   +E    +L + + K +          
Sbjct: 389 EDVFRLMERAGI---RANELLYTTLIHGHFVYKNSERALSLLSEMKDKGM---------- 435

Query: 322 EDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL-VCKVL 380
             E D +  G  I     L+   + K+L N +DE        L     ++T  +  C   
Sbjct: 436 --ELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECG------LKPNNVIYTNIMDAC--- 484

Query: 381 RHFKS-PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
             FK+  E+            G+  ++     ++  L + G ++       K+   G+  
Sbjct: 485 --FKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEP 542

Query: 440 PFSTIRLIIDFYGISKKADAAL--------KAFHDDRTLCGPISKFKLMLLYSSLLRTLT 491
                  ++D    + + D A+        K    D  +C            +SL+    
Sbjct: 543 NVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVC------------TSLMDGHL 590

Query: 492 KCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAY 551
           K     DA  +  +MI SG+  D+  ++  ++ F      +  +++ S + +NG+ PDA 
Sbjct: 591 KQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAV 650

Query: 552 MFKVLIQAYCKYLSN 566
           ++  LI   C+ L N
Sbjct: 651 VYNCLINK-CQKLGN 664



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 109/263 (41%), Gaps = 33/263 (12%)

Query: 384 KSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFST 443
           +S E AW  F     +     +V+    M+  L + G +     L+A++++ G      T
Sbjct: 177 RSSELAWRLF-----EQLPAPNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVT 231

Query: 444 IRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVL 503
              +ID YG   + +   K   + R  CG       ++ Y++L+    K  R   A +  
Sbjct: 232 YNSLIDGYGKCGELEEVEKLVGEMRG-CGCRPD---VVTYNALVNCFCKFGRMERAYSYF 287

Query: 504 EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK- 562
            EM   G++ +V TFS  +  F   G  +   KLF+ +R  G++P+   +  L+   CK 
Sbjct: 288 AEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKA 347

Query: 563 -------YLSNSNL---MP-DAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALR 611
                   L+N  +   +P +  T  +L   L KEG+  EA           DV  L  R
Sbjct: 348 GRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEA----------EDVFRLMER 397

Query: 612 GHIWAVSSADLTRVHS--IYRNS 632
             I A      T +H   +Y+NS
Sbjct: 398 AGIRANELLYTTLIHGHFVYKNS 420



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 135/596 (22%), Positives = 235/596 (39%), Gaps = 97/596 (16%)

Query: 5   RFLPAVILSKAFTQLQTRSFVRAPFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLND 64
           RF+P  I + A + L T +    P +++L L                    +SL ++  D
Sbjct: 20  RFIPFCIAATAISTLPTGTTAATPISDRLRLL-------------------HSLQAVPAD 60

Query: 65  RLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTL 124
            LL     +H L S+ +   A  I+   +    F H++S L  L   LA     H   +L
Sbjct: 61  HLL-----SHPLPSSAHLCLAAHILARARL---FPHSRSLLSRL---LAPGHHPHLAASL 109

Query: 125 IGDISS---------SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
           +  +           S   +V    ++L+       D  L L+   E R      +T + 
Sbjct: 110 VDLLHRAALALGPRRSALPSVVDTLLSLLADRGLLDDAVLALARVRELRVPP---NTRTC 166

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           N ++   A+   +  A   F Q+      PN  T+ +MI+ L   G L  A  + + +  
Sbjct: 167 NHILLCLARERSSELAWRLFEQL----PAPNVFTFNIMIDFLCKEGDLAEARALLARMKA 222

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQG 294
           +        Y  L++G+      +E + L+ EMR  G  P      AL     + G ++ 
Sbjct: 223 IGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMER 282

Query: 295 ANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGV-------QLKP----- 342
           A  +  EM  +  + NV  +    D         N  VR A  +        +KP     
Sbjct: 283 AYSYFAEMKREGVMANVVTFSTFVD-----AFCKNGMVREAMKLFAQMRMKGMKPNEVTY 337

Query: 343 --WLDPKALANTLDE---WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVA 397
              +D    A  LD+    + E+V        V  T LV  + +  K  E    F   + 
Sbjct: 338 TCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVF--RLM 395

Query: 398 YQPGYTHDVYALEKMLTILARHGHV-----ELVDRLIAKLRSDGMRLPFSTIRLIIDFYG 452
            + G    + A E + T L  HGH      E    L+++++  GM L  S    +I  +G
Sbjct: 396 ERAG----IRANELLYTTLI-HGHFVYKNSERALSLLSEMKDKGMELDVSLYGALI--WG 448

Query: 453 IS--KKADAALKAFHDDRTLCG--PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF 508
           +   +K D A K+  +    CG  P +     ++Y++++    K +++ +AI +L++M+ 
Sbjct: 449 LCNLQKLDEA-KSLLNKMDECGLKPNN-----VIYTNIMDACFKARKESEAIALLQKMMD 502

Query: 509 SGIVPDVQTFSGLMYHFALQG--DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           SG  P++ T+  L+      G  DE I    F+ +   G+EP+   +  L+   CK
Sbjct: 503 SGFRPNIVTYCALVDGLCKAGSIDEAISH--FNKMVDLGLEPNVQAYTALVDGLCK 556



 Score = 45.8 bits (107), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 53/258 (20%), Positives = 103/258 (39%), Gaps = 37/258 (14%)

Query: 81  NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNF 140
           N++ ALS++  +K +     + S   AL   L   Q+  E K+L+  +        +V +
Sbjct: 419 NSERALSLLSEMK-DKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIY 477

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
            N+M     +      ++   +        +  +Y  ++    K G   EA+  F +++D
Sbjct: 478 TNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVD 537

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSAL---------------EVFSALPLMRIKRTSKQ- 244
            G  PN + YT +++ L   G+LD A+                V ++L    +K+ + Q 
Sbjct: 538 LGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQD 597

Query: 245 -------------------YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALE 284
                              Y   V GF  +    EA+ +L+EM ++G  P   +    + 
Sbjct: 598 AFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLIN 657

Query: 285 RMQEMGFIQGANEFLREM 302
           + Q++G ++ A     EM
Sbjct: 658 KCQKLGNMEEAAILQNEM 675


>gi|15220591|ref|NP_172051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334182311|ref|NP_001184914.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213450|sp|Q9SYK1.1|PPR11_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g05600
 gi|4836924|gb|AAD30626.1|AC007153_18 Hypothetical protein [Arabidopsis thaliana]
 gi|53828567|gb|AAU94393.1| At1g05600 [Arabidopsis thaliana]
 gi|56790224|gb|AAW30029.1| At1g05600 [Arabidopsis thaliana]
 gi|332189741|gb|AEE27862.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189742|gb|AEE27863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 113/511 (22%), Positives = 208/511 (40%), Gaps = 46/511 (9%)

Query: 65  RLLDPFIVTHALRSAPNADSALSIMEALKSN-PNFSHNQSTLHALATVLAKSQRNHELKT 123
           R+L P +++  L+   N  +AL + E  K   P++ HN S    +  +L KS R  E+K 
Sbjct: 8   RVLTPSLLSQILKKQKNPVTALKLFEEAKERFPSYGHNGSVYATMIDILGKSNRVLEMKY 67

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           +I  +           F ++++ +S +G LE  +S +    +   +  + S++ ++    
Sbjct: 68  VIERMKEDSCECKDSVFASVIRTFSRAGRLEDAISLFKSLHEFNCVNWSLSFDTLLQEMV 127

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSR--TYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
           K  +   A   FR+    G   NSR     ++++ L  + + D A +VF  +        
Sbjct: 128 KESELEAACHIFRKYC-YGWEVNSRITALNLLMKVLCQVNRSDLASQVFQEMNYQGCYPD 186

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEM--RDDGKFPGRAM---RVALERMQEMGFIQGAN 296
              Y IL++GF    + +EA  LL  M  R   K  G  +   R+ L+ + + G +  A 
Sbjct: 187 RDSYRILMKGFCLEGKLEEATHLLYSMFWRISQKGSGEDIVVYRILLDALCDAGEVDDAI 246

Query: 297 EFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEW 356
           E L ++L        R Y        + + +    V+      L     P      LD +
Sbjct: 247 EILGKILRKGLKAPKRCYHHIEAGHWESSSEGIERVKRLLTETLIRGAIP-----CLDSY 301

Query: 357 SPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTIL 416
           S     L  + K V       +VL   +S            ++P  T  +Y  +  +  L
Sbjct: 302 SAMATDLFEEGKLVEGE----EVLLAMRSK----------GFEP--TPFIYGAK--VKAL 343

Query: 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK 476
            R G ++    +I K    G  LP   +  ++   G+      +++A    + +   +S 
Sbjct: 344 CRAGKLKEAVSVINKEMMQGHCLPTVGVYNVL-IKGLCDDGK-SMEAVGYLKKMSKQVSC 401

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG----DEK 532
                 Y +L+  L +  +  +A  V+EEM+     P V+T     YH  ++G    D +
Sbjct: 402 VANEETYQTLVDGLCRDGQFLEASQVMEEMLIKSHFPGVET-----YHMMIKGLCDMDRR 456

Query: 533 --IVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
              V  L  MV Q+ V P++ ++K L ++ C
Sbjct: 457 YEAVMWLEEMVSQDMV-PESSVWKALAESVC 486


>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 624

 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 1/143 (0%)

Query: 162 EYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG 221
           E  Q+   L   ++NI++  + + G     +E   Q+++ G +P+  TYT +I      G
Sbjct: 326 EMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEG 385

Query: 222 KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMR 280
            +D A+ +   +P    K  +  Y I+++G    ER+ +A+ L++ M   G  P      
Sbjct: 386 LIDEAVMLLKNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFN 445

Query: 281 VALERMQEMGFIQGANEFLREML 303
             +  + + G ++ A E L++ML
Sbjct: 446 TIINFLCKKGLVEQAIELLKQML 468



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 12/125 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ YS+++  L K  +  +A+ +L  MI  GI P+V T+S + +  A +G    V ++F 
Sbjct: 476 LISYSTVIDGLGKAGKTEEALELLNVMINKGITPNVITYSSMAFALAREGRIDKVIQMFD 535

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEG 587
            ++   +  DA ++  +I + CK            Y+ ++  MP+ +T   L K L  EG
Sbjct: 536 NIQDATIRSDAVLYNAVISSLCKRRETDLAIDFLAYMVSNGCMPNESTYTALIKGLASEG 595

Query: 588 RRKEA 592
              EA
Sbjct: 596 LLCEA 600



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 88/491 (17%), Positives = 186/491 (37%), Gaps = 88/491 (17%)

Query: 125 IGDISSSKFLNVSV-------NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI 177
           +G + +++ L  +V        +  +++     G +   L+  +E   R+ +     Y++
Sbjct: 97  VGQVEAARRLAAAVPVPPNAYTYFPVVRGLCGRGRIADALAVLDEMTSRSCVPIPPMYHV 156

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           ++    ++G    A+     +  +G+  ++    ++I  + + G +D  LE+   LPL  
Sbjct: 157 IIESACRSGGYSSALRVLEALHAKGSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFG 216

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANE 297
            +     Y  +++G    +R+ + + L++EM          +  AL +M + G       
Sbjct: 217 CEADIVSYNAVLKGLCAAKRWGDVEELMDEMVK--------VHEALSQMAQHGCT----- 263

Query: 298 FLREMLPDKRIKNVRYYE---DGSDDDEDENDDNNSGVRI-AYGVQLKPWLDPKALANTL 353
                 PD     +R Y    DG   +      N    R+ +YG++              
Sbjct: 264 ------PD-----IRMYATIIDGICKEGHHEVANEILSRMPSYGLK-------------- 298

Query: 354 DEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKML 413
               P VV       +    + +C   R  K+ E          YQ     D      ++
Sbjct: 299 ----PNVVC------YNTVLKGICSADRWEKAEELLTEM-----YQKNCPLDDVTFNILV 343

Query: 414 TILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CG 472
               ++G V+ V  L+ ++   G      T   +I+ +      D A+    +  +  C 
Sbjct: 344 DFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCK 403

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
           P +     + Y+ +L+ L   +R  DA  ++  MI  G +P+  TF+ ++     +G   
Sbjct: 404 PNT-----ISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKG--- 455

Query: 533 IVQKLFSMVRQ---NGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKE 577
           +V++   +++Q   NG  PD   +  +I    K             + N  + P+  T  
Sbjct: 456 LVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNVITYS 515

Query: 578 LLKKSLWKEGR 588
            +  +L +EGR
Sbjct: 516 SMAFALAREGR 526



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/221 (20%), Positives = 90/221 (40%), Gaps = 3/221 (1%)

Query: 92  LKSNPNFSHNQSTLHALATV--LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYST 149
           LK+ P+     +T+     +  L  ++R  + + L+  +     L   V F  ++ +   
Sbjct: 394 LKNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCK 453

Query: 150 SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRT 209
            G +E  +    +           SY+ V+    K GK  EA+E    +I++G  PN  T
Sbjct: 454 KGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNVIT 513

Query: 210 YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
           Y+ M   L   G++D  +++F  +    I+  +  Y  ++         D A   L  M 
Sbjct: 514 YSSMAFALAREGRIDKVIQMFDNIQDATIRSDAVLYNAVISSLCKRRETDLAIDFLAYMV 573

Query: 270 DDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIK 309
            +G  P  +   AL + +   G +  A + L E+   + ++
Sbjct: 574 SNGCMPNESTYTALIKGLASEGLLCEAQDLLSELCSRRAVR 614


>gi|115475535|ref|NP_001061364.1| Os08g0248400 [Oryza sativa Japonica Group]
 gi|113623333|dbj|BAF23278.1| Os08g0248400, partial [Oryza sativa Japonica Group]
          Length = 440

 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+SL+  L K  R  +A  +L+ MI  G+ P+V T+S L++ +A +G    ++ L  ++ 
Sbjct: 314 YTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHGYATKGALVEMRDLLDLMV 373

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
           +NG++PD ++F +LI A  K+            +    L PD  T   L   L K GR  
Sbjct: 374 RNGIQPDRHVFSILICACTKHQNVDVAMFVFSKMRQQRLTPDVVTYGTLIDGLCKSGRVD 433

Query: 591 EA 592
           +A
Sbjct: 434 DA 435



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 52/244 (21%), Positives = 105/244 (43%), Gaps = 27/244 (11%)

Query: 67  LDPFIVTHALRS---APNADSALSI----MEALKSNPN-FSHN---QSTLHALATVLAKS 115
           ++P I T  L+S        +A++I    M  L   P+ FS+N   +   H      ++S
Sbjct: 131 VEPIIFTPLLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGLCHE-----SRS 185

Query: 116 QRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
           Q   EL  ++ D       +V V++  ++      GD +   ST++E  +R  L    +Y
Sbjct: 186 QEALELLHMMADDGGDCPPDV-VSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTY 244

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           N +++   K     +A++   +++  G +P+  TY  ++    + G+   A+ +   +  
Sbjct: 245 NTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCS 304

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP----------GRAMRVALER 285
             ++  +  Y  L++      R  EA+ +L+ M   G  P          G A + AL  
Sbjct: 305 DGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHGYATKGALVE 364

Query: 286 MQEM 289
           M+++
Sbjct: 365 MRDL 368



 Score = 45.8 bits (107), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 27/140 (19%), Positives = 63/140 (45%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  ++     +  ++  +   N   +   +    +YN ++  Y  +G++ EA+    +
Sbjct: 242 VTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEK 301

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +  +G  P++ TYT ++++L   G+   A ++  ++    +K     Y  L+ G+     
Sbjct: 302 MCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHGYATKGA 361

Query: 258 FDEAKSLLNEMRDDGKFPGR 277
             E + LL+ M  +G  P R
Sbjct: 362 LVEMRDLLDLMVRNGIQPDR 381



 Score = 43.1 bits (100), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 14/130 (10%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSG--IVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           Y+ LL+ L    R  +A+ +L  M   G    PDV ++S ++     +GD       +  
Sbjct: 172 YNILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAYSTYHE 231

Query: 541 VRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGR 588
           + + G+ PD   +  ++ A CK             +  + +MPD  T   +       G+
Sbjct: 232 MLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQ 291

Query: 589 RKEAAAVEER 598
            KEA  + E+
Sbjct: 292 SKEAIGILEK 301


>gi|358348674|ref|XP_003638369.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355504304|gb|AES85507.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 501

 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/270 (20%), Positives = 111/270 (41%), Gaps = 14/270 (5%)

Query: 19  LQTRSFVRAPFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRS 78
           ++++SF   PF +     L    +++  +L         L    +  +L   IV +A   
Sbjct: 220 IKSKSFNYRPFKHSYNAILHSFLVLNQYKLIEWVYEQMLLDGGFSSDILTYNIVIYAKYR 279

Query: 79  APNADSALSIMEALKSN---PNFSHNQSTLHALATV-----------LAKSQRNHELKTL 124
               D  L+++  +  N   P+F      LHA++             L K +   +   L
Sbjct: 280 LGKVDQVLTLLGEMDRNGFSPDFHTYNILLHAISKGDIGKGDLDKEDLGKEKEQFKALKL 339

Query: 125 IGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK 184
           +  +  +      ++F  L+  +S +G L+     +NE ++   +    +Y ++++ Y  
Sbjct: 340 LNYMRETGIEPTVLHFTTLIDGFSRAGKLDACQYFFNEMKKNGCMPDVVAYTVMITGYVV 399

Query: 185 TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQ 244
             +  +A E F +++ +  +PN  TY  MI  L   GK D A  +F  +        S  
Sbjct: 400 ARELEKAQEMFEEMLSKELVPNVFTYNSMIRGLCMAGKFDEACSMFKEMERKGCSPNSVV 459

Query: 245 YLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
           Y+ LV       R  +A+ ++ +M + GK+
Sbjct: 460 YITLVSCLRNAGRVADAREVIKQMTETGKY 489



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 92/229 (40%), Gaps = 40/229 (17%)

Query: 395 WVAYQ----PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF 450
           WV  Q     G++ D+     ++    R G V+ V  L+ ++  +G    F T  +++  
Sbjct: 252 WVYEQMLLDGGFSSDILTYNIVIYAKYRLGKVDQVLTLLGEMDRNGFSPDFHTYNILL-- 309

Query: 451 YGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSG 510
           + ISK                G I K  L          L K K  F A+ +L  M  +G
Sbjct: 310 HAISK----------------GDIGKGDLDK------EDLGKEKEQFKALKLLNYMRETG 347

Query: 511 IVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC--------- 561
           I P V  F+ L+  F+  G     Q  F+ +++NG  PD   + V+I  Y          
Sbjct: 348 IEPTVLHFTTLIDGFSRAGKLDACQYFFNEMKKNGCMPDVVAYTVMITGYVVARELEKAQ 407

Query: 562 ---KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
              + + +  L+P+  T   + + L   G+  EA ++ +  E+    P+
Sbjct: 408 EMFEEMLSKELVPNVFTYNSMIRGLCMAGKFDEACSMFKEMERKGCSPN 456



 Score = 42.4 bits (98), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 88/211 (41%), Gaps = 15/211 (7%)

Query: 384 KSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFST 443
           +  + A+ FF W   Q  Y H   A   ++ I A     + + RL+ ++   G +    T
Sbjct: 139 RCAKLAYKFFVWCGQQEDYRHTANAYHLIMNIYAECKEFKALWRLVDEMIGKGYKATART 198

Query: 444 IRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAIN-V 502
             ++I   G +  A   ++ F   ++       FK    Y+++L +     + +  I  V
Sbjct: 199 FNILIRTCGEAGLAKTLVERFIKSKSF--NYRPFKHS--YNAILHSFLVLNQ-YKLIEWV 253

Query: 503 LEEMIF-SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
            E+M+   G   D+ T++ ++Y     G    V  L   + +NG  PD + + +L+ A  
Sbjct: 254 YEQMLLDGGFSSDILTYNIVIYAKYRLGKVDQVLTLLGEMDRNGFSPDFHTYNILLHAIS 313

Query: 562 KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           K         D    +L K+ L KE  + +A
Sbjct: 314 K--------GDIGKGDLDKEDLGKEKEQFKA 336


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 96/217 (44%), Gaps = 26/217 (11%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFS------TIRLIIDFYGIS 454
           G T DV     ++  L   G++ +  +L  ++ +D  R   +      T  +I+D     
Sbjct: 169 GCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKV 228

Query: 455 KKADAALKAFHDDRTLCGPISKFKL-------MLLYSSLLRTLTKCKRDFDAINVLEEMI 507
            + D A + F + +T  G I    L       M+ ++ L+ TL K  +  +A  +L  MI
Sbjct: 229 GREDEAKQLFEEMKTQ-GMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMI 287

Query: 508 FSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNS 567
            SGIVPD+ T++ L+  F + GD    ++LF  +   G EPD   + VLI  Y K L   
Sbjct: 288 ESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVE 347

Query: 568 NLM------------PDAATKELLKKSLWKEGRRKEA 592
             M            P+  T + L K ++  G+  +A
Sbjct: 348 EAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDA 384



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 110/254 (43%), Gaps = 10/254 (3%)

Query: 71  IVTHALRSAPNADSALSIMEALKSN---PNFSHNQS------TLHALATVLAKSQRNHEL 121
           I+   L      D A  + E +K+    PN   +Q       T + L   L K  +  E 
Sbjct: 220 IIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEA 279

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
           K L+G +  S  +   V + +L++ +   GDL      +     +       SYN++++ 
Sbjct: 280 KKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLING 339

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
           Y+KT K  EA++ + +++  G  PN  TY  +++ +   GK+D A ++FS +    I   
Sbjct: 340 YSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAEN 399

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQGANEFLR 300
           S  Y I ++G    +   EA  L  E++    K     +   ++ + + G ++ A E   
Sbjct: 400 SYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFE 459

Query: 301 EMLPDKRIKNVRYY 314
           ++  +    NV  Y
Sbjct: 460 KLSNEGHEPNVVTY 473



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 101/262 (38%), Gaps = 30/262 (11%)

Query: 48  LAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHA 107
           +A  SN+  S SS+ N  L   F  + A+ S PN   A  +      N   +H     H 
Sbjct: 1   MASTSNTVPSASSIRNSNLSSLFTHSSAIPS-PNPQIAFFLRHCKTGNVTATHALHFFHL 59

Query: 108 L---ATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD------LELVLS 158
           +       + S  NH    L+  ++  K  +   +  N M+    S D      L   L 
Sbjct: 60  MMRSTPTPSLSSFNH----LLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLC 115

Query: 159 TWNEYRQ----------RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSR 208
             N  R+          R    +  +YN ++       +  EA   F ++   G  P+  
Sbjct: 116 NVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVV 175

Query: 209 TYTVMIEHLVNLGKLDSALEVFSAL--PLMRIKRTSK----QYLILVEGFVGVERFDEAK 262
           TY  +I+ L   G ++ AL++   +   + R +   K     Y I+V+G   V R DEAK
Sbjct: 176 TYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAK 235

Query: 263 SLLNEMRDDGKFPGRAMRVALE 284
            L  EM+  G  P   +   L+
Sbjct: 236 QLFEEMKTQGMIPNEMLDQGLQ 257



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/163 (20%), Positives = 73/163 (44%), Gaps = 6/163 (3%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D+     ++  L + G V    +L+  +   G+     T   +I+ + +    ++A
Sbjct: 255 GLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSA 314

Query: 461 LKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
            + F       C P      ++ Y+ L+   +K  +  +A+ +  EM+  G  P+V T+ 
Sbjct: 315 RELFVSMPSKGCEPD-----VISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYD 369

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            L+    L G     +KLFS+++ +G+  ++Y + + +   CK
Sbjct: 370 SLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCK 412



 Score = 43.5 bits (101), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 44/99 (44%)

Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           L  E+ N ++    K GK   A E F ++ +EG  PN  TYT+MI      G++D A  +
Sbjct: 433 LEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVL 492

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
              +           Y  L+ GF    + +E   LL+ M
Sbjct: 493 IQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRM 531



 Score = 39.3 bits (90), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 45/102 (44%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y I +    K    FEA++ F ++              +I+ L   GKL++A E+F  L
Sbjct: 402 TYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKL 461

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                +     Y I++ GF    + D+A  L+ +M  +G  P
Sbjct: 462 SNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTP 503


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 102/496 (20%), Positives = 195/496 (39%), Gaps = 42/496 (8%)

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L+ D++    +  ++ +  L+   S  G +  VL    E      +    ++N  +    
Sbjct: 257 LLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLC 316

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           K  +  EA +   +++  G  PNS TY V++  L  +GK+D A  + + +P         
Sbjct: 317 KMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVP----NPNVV 372

Query: 244 QYLILVEGFVGVERFDEAKSLLNE-MRDDGKFPGR-AMRVALERMQEMGFIQGANEFLRE 301
            +  L+ G+V   R DEAK++++E M   G  P        +  + + G++  A E + E
Sbjct: 373 LFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNE 432

Query: 302 MLPDKRIKNV--------RYYEDGSDDDEDENDDNNSGVRIA-----YGVQLKPWLDPKA 348
           M       NV        R+ ++G  ++     D  SG  +A     Y   +      + 
Sbjct: 433 MQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEK 492

Query: 349 LANTLDEWSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDV 406
           + + L+ +            F + + +  +CKV +     E A   +  +  + G   + 
Sbjct: 493 VQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKF----EEALGLYQDMLLE-GVIANT 547

Query: 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD 466
                ++    R G ++   +L+  +   G  L   T   +I     +   +  L  F D
Sbjct: 548 ITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFED 607

Query: 467 DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
             +     +     +L + L RT         A+  L +MI  G+ PD+ T++ L+    
Sbjct: 608 MMSKGLNPNNISCNILINGLCRT----GNIQHALEFLRDMIHRGLTPDIVTYNSLINGLC 663

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK---------YLS---NSNLMPDAA 574
             G  +    LF  ++  G+ PDA  +  LI  +CK          LS   +S  +P+  
Sbjct: 664 KTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEV 723

Query: 575 TKELLKKSLWKEGRRK 590
           T  +L  +  KEG ++
Sbjct: 724 TWYILVSNFIKEGDQE 739



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 95/239 (39%), Gaps = 23/239 (9%)

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTH--DVYALEKMLTILARHGHVELVDRLIAKLR 433
           +CK+L       T+   F W   Q GY H  DVY +  ++  L   G  +  D L+ +++
Sbjct: 99  LCKLLELPLDVPTSMELFQWAGTQKGYCHMFDVYYM--LIDKLGAAGEFKTTDALLMQMK 156

Query: 434 SDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL--CGPISKFKLMLLYSSLLRTLT 491
            +G+    S   LI+  YG +     A +   D R +  C P  +      Y+ +L  L 
Sbjct: 157 QEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFRS-----YNVVLDVLL 211

Query: 492 KCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAY 551
                    NV  EM+  GI P V TF  +M    L  +      L   + ++G  P+A 
Sbjct: 212 AGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAI 271

Query: 552 MFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
           +++ LI A  K             +     +PD  T       L K  R  EAA + +R
Sbjct: 272 VYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDR 330



 Score = 42.4 bits (98), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 84/206 (40%), Gaps = 20/206 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK--KAD 458
           G   +      +++ L +   V+    +   + S G +    T   +I  +G+ K  K +
Sbjct: 472 GLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLI--FGLCKVNKFE 529

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
            AL   + D  L G I+     + Y++L+    +     +A+ ++ +M+F G   D  T+
Sbjct: 530 EAL-GLYQDMLLEGVIAN---TITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITY 585

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSN 566
           +GL+      G+ +    LF  +   G+ P+     +LI   C+             + +
Sbjct: 586 NGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIH 645

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEA 592
             L PD  T   L   L K GR +EA
Sbjct: 646 RGLTPDIVTYNSLINGLCKTGRAQEA 671



 Score = 42.4 bits (98), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 35/182 (19%), Positives = 69/182 (37%)

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
           S    + N    + L + L K ++  +   + GD+SS         F +L+         
Sbjct: 469 SGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKF 528

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           E  L  + +      + +T +YN ++  + + G   EA++    ++  G   +  TY  +
Sbjct: 529 EEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGL 588

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           I+ L   G ++  L +F  +    +   +    IL+ G         A   L +M   G 
Sbjct: 589 IKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGL 648

Query: 274 FP 275
            P
Sbjct: 649 TP 650



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 73/185 (39%), Gaps = 15/185 (8%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
            F+ N  T   L   L +  +  E + L+  + +       V F  L+  Y + G L+  
Sbjct: 335 GFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNV----VLFNTLINGYVSRGRLDEA 390

Query: 157 LSTWNEYRQRAKLLSTE------SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
            +  +E      +LS        +YN ++    K G    A E   ++  +G  PN  TY
Sbjct: 391 KAVMHE-----SMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITY 445

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
           T++I+     G+L+ A  V   +    +   +  Y  L+      E+  +A ++  +M  
Sbjct: 446 TILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSS 505

Query: 271 DGKFP 275
            G  P
Sbjct: 506 KGCKP 510


>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
 gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 103/505 (20%), Positives = 201/505 (39%), Gaps = 44/505 (8%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           + A ++ E +KS   F  ++ T + L  V  KS+R  E   ++ ++  +      V + +
Sbjct: 121 EEAAAVFEDMKS-MGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNS 179

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  Y+  G LE  +   N+  +R   L   +Y  ++S + +TGK+  A+  F ++   G
Sbjct: 180 LISAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAG 239

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI--KRTSKQYLILVEGFVGVERFDE 260
             PN  T+  +I+   N GK    ++VF  + +        +   L+ V G  G++   E
Sbjct: 240 CKPNICTFNALIKMHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMD--SE 297

Query: 261 AKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREML-----PDKRIKNV--- 311
              +  EM+  G  P R      +      G    A    + ML     PD    N    
Sbjct: 298 VSGVFKEMKRVGFVPERDTYNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLA 357

Query: 312 -----RYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLAD 366
                  +E       +  D       + +   L  + + K +   L   + E+ S + +
Sbjct: 358 ALARGGLWEQSEKILAEMQDGMCKPNELTHCSLLHAYANGKEIGRML-ALAEEICSGVIE 416

Query: 367 AKFVWTTRLV-----CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGH 421
              V    LV     C +L      E A+        + G++ D+  L  M+ I  R   
Sbjct: 417 PHAVLLKTLVLVNSKCDLLLE---AERAF----LELKRKGFSPDLSTLNAMIAIYGRRQM 469

Query: 422 VELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS---KKADAALKAFHDDRTLCGPISKFK 478
           V   + ++  ++  G     +T   ++  +  S   ++++  LK           IS   
Sbjct: 470 VTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFERSEEVLKEILAKGIKPDIIS--- 526

Query: 479 LMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD-EKIVQKL 537
               Y++++    +  R  +A ++  EM  SG++PDV T++  +  +A     E+ +  +
Sbjct: 527 ----YNTVIFAYCRNGRMKEASHIFSEMRESGLIPDVITYNTFVASYAADSMFEEAIDVV 582

Query: 538 FSMVRQNGVEPDAYMFKVLIQAYCK 562
             M++  G +P+   +  +I  YCK
Sbjct: 583 CYMIKH-GCKPNQNTYNSVIDGYCK 606



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 77/183 (42%), Gaps = 1/183 (0%)

Query: 87  SIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQW 146
            + E +K N     ++ T + L T   +     E   +  D+ S  F+   V +  L+  
Sbjct: 90  GLFEGMK-NAGILPDEYTYNTLITCCRRGSLYEEAAAVFEDMKSMGFVPDKVTYNTLLDV 148

Query: 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206
           Y  S  ++  +    E        S  +YN ++S YA+ G   EA+E   Q+++ G   +
Sbjct: 149 YGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGIKLD 208

Query: 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
             TYT M+   V  GK +SA+ VF  +     K     +  L++      +F E   +  
Sbjct: 209 VFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMKVFE 268

Query: 267 EMR 269
           E++
Sbjct: 269 EIK 271



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 73/174 (41%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
            FS + STL+A+  +  + Q   +   ++  +  S F      + +LM  +S S + E  
Sbjct: 449 GFSPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFERS 508

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
                E   +       SYN V+  Y + G+  EA   F ++ + G IP+  TY   +  
Sbjct: 509 EEVLKEILAKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEMRESGLIPDVITYNTFVAS 568

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
                  + A++V   +     K     Y  +++G+  + R D+A   ++ + +
Sbjct: 569 YAADSMFEEAIDVVCYMIKHGCKPNQNTYNSVIDGYCKLNRRDDAIKFISSLHE 622



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 50/234 (21%), Positives = 104/234 (44%), Gaps = 25/234 (10%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G +  +     +++  AR G +E    L  ++   G++L   T   ++  +  + K ++A
Sbjct: 169 GCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESA 228

Query: 461 LKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           ++ F + RT  C P      +  +++L++      +  + + V EE+     VPD+ T++
Sbjct: 229 MRVFEEMRTAGCKPN-----ICTFNALIKMHGNRGKFAEMMKVFEEIKICCCVPDIVTWN 283

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY--C----------KYLSNS 567
            L+  F   G +  V  +F  +++ G  P+   +  LI AY  C          K + ++
Sbjct: 284 TLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRCGSFDQAMAMYKRMLDT 343

Query: 568 NLMPDAAT-----KELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWA 616
            + PD +T       L +  LW++  +  A   +  C K N++   +L  H +A
Sbjct: 344 GITPDLSTYNAVLAALARGGLWEQSEKILAEMQDGMC-KPNELTHCSLL-HAYA 395



 Score = 42.7 bits (99), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 73/171 (42%), Gaps = 15/171 (8%)

Query: 398 YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA 457
           ++ G+  DVYA   ++T    +G       +  K+  +G +    T  +I++ YG     
Sbjct: 25  HKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMP 84

Query: 458 DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDF---DAINVLEEMIFSGIVPD 514
              +    +     G +        Y++L+   T C+R     +A  V E+M   G VPD
Sbjct: 85  WNKITGLFEGMKNAGILPD---EYTYNTLI---TCCRRGSLYEEAAAVFEDMKSMGFVPD 138

Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQ---NGVEPDAYMFKVLIQAYCK 562
             T++ L+    + G  + +++   ++R+   NG  P    +  LI AY +
Sbjct: 139 KVTYNTLL---DVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYAR 186


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 1/143 (0%)

Query: 133 FLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV 192
           F NV + + +L+     SG +   L   +    R +     +Y+ ++    K     +A+
Sbjct: 382 FPNV-ITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAI 440

Query: 193 ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
               ++ D+G  PN  TYT++I+ L   G+L+ A  +F  L +     T   Y ++++GF
Sbjct: 441 ALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGF 500

Query: 253 VGVERFDEAKSLLNEMRDDGKFP 275
                FDEA SLL++M+D+   P
Sbjct: 501 CSHGLFDEALSLLSKMKDNSCIP 523



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 8/164 (4%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD-- 458
           GY  D   L   +      G +        KL + G  L   +   +I+  G+ K  +  
Sbjct: 135 GYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLIN--GLCKVGETR 192

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
           AAL+     R + G + +  + ++YS+++ ++ K K   DA ++  EM+   I  ++ T+
Sbjct: 193 AALELL---RRVDGKLVQLDV-VMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTY 248

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           S L+  F + G  K    LF+ +    + PD Y F +L+ A+CK
Sbjct: 249 SALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCK 292



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/270 (21%), Positives = 113/270 (41%), Gaps = 7/270 (2%)

Query: 40  AQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-ALRSA----PNADSALSIMEALKS 94
           + +IDS+      N +  L S +  R +   IVT+ AL S          A+ +   + S
Sbjct: 214 STIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTS 273

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
             N + +  T + L     K  R  E K  +  +         V + +LM  Y    ++ 
Sbjct: 274 E-NINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVN 332

Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
           +  S  N    R    +  SYNIV++ + K     +A++ F+++  +   PN  TY  +I
Sbjct: 333 MAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLI 392

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
           + L   G++  ALE+   +     +     Y  +++        D+A +LL +++D G  
Sbjct: 393 DGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIR 452

Query: 275 PGR-AMRVALERMQEMGFIQGANEFLREML 303
           P      + ++ + + G ++ A     ++L
Sbjct: 453 PNMYTYTILIDGLCKGGRLEDARNIFEDLL 482



 Score = 45.4 bits (106), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ YS+L+       +  DAI +  +M    I PDV TF+ L+  F  +G  K  +   +
Sbjct: 245 IVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLA 304

Query: 540 MVRQNGVEPDAYMFKVLIQAYC 561
           M+ + G++PD   +  L+  YC
Sbjct: 305 MMMKQGIKPDIVTYNSLMDGYC 326



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 42/205 (20%), Positives = 84/205 (40%), Gaps = 16/205 (7%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           DVY    ++    + G V+     +A +   G++    T   ++D Y +  + + A K+ 
Sbjct: 279 DVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMA-KSI 337

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
            +  +  G  +  +    Y+ ++    K K    A+ + +EM    I P+V T++ L+  
Sbjct: 338 LNTMSHRGVTATVRS---YNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDG 394

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPD 572
               G      +L  ++   G +PD   +  ++ A CK             L +  + P+
Sbjct: 395 LCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPN 454

Query: 573 AATKELLKKSLWKEGRRKEAAAVEE 597
             T  +L   L K GR ++A  + E
Sbjct: 455 MYTYTILIDGLCKGGRLEDARNIFE 479


>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa]
 gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 108/504 (21%), Positives = 191/504 (37%), Gaps = 42/504 (8%)

Query: 67  LDPFIVTHALRS---APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT 123
           L P  V+  L+S       D AL           ++HN     +   VLA +     +K+
Sbjct: 59  LSPNFVSFVLKSMELQKRPDLALKFFTWAGKQKKYTHNLQCYVSSIDVLAINGDLDNVKS 118

Query: 124 LIGDISSSKFL-NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVY 182
           +        FL NVS    +L++ + + G +E +L  W   ++     S  +YN +++  
Sbjct: 119 VFCKFRGMGFLMNVSAA-NSLIKSFGSLGMVEELLWVWRGMKENGVEPSLFTYNFLLNGL 177

Query: 183 AKTGKNFEAVETFRQVIDEGAI-PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
             +    E+ E   +V++ G I P+  TY  MI+    +GK   A E F  + L  +   
Sbjct: 178 VNS-VFIESAERVLEVMENGKIGPDVVTYNTMIKGYCQVGKTQKAFEKFRDMELRNVAPD 236

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQGANEFLR 300
              Y+ L++       FD   SL +EM ++G + P  A  + +  + + G          
Sbjct: 237 KITYMTLIQACYAEGDFDLCLSLYHEMDENGLEIPPHAYSLVIGGLCKEGKCVEGYAVFE 296

Query: 301 EMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEV 360
           +M+      NV  Y   +  D +    N     + +    K  L+            P+V
Sbjct: 297 KMIQKGCKVNVAIYT--ALIDSNAKCGNMGEAMLLFERMKKEGLE------------PDV 342

Query: 361 VSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHG 420
           V+      +      +CK  R  ++ E  +  FC V    G   +      ++  L + G
Sbjct: 343 VT------YGVVVNCMCKSGRLDEAME--YLEFCRVN---GVAVNAMLYSSLIDGLGKAG 391

Query: 421 HVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH--DDRTLCGPISKFK 478
            V   ++L  ++   G          +ID      K D AL  F   +D      +  + 
Sbjct: 392 RVHEAEKLFEEMVKKGCPPDSYCYNALIDALAKCGKTDEALAFFKRMEDEGCDQTVYTYT 451

Query: 479 LMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF 538
           +M+  + L R      ++ +A+ + + MI  GI P    F  L     L G      KL 
Sbjct: 452 IMI--NGLFRE----HKNEEALKMWDMMIDKGITPTAAAFRALSIGLCLSGKVARACKLL 505

Query: 539 SMVRQNGVEPDAYMFKVLIQAYCK 562
             +   GV P+   F+ ++   CK
Sbjct: 506 DELAPMGVIPET-AFEDMLNVLCK 528



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 106/275 (38%), Gaps = 38/275 (13%)

Query: 356 WSPEVVSLLADAKFVWTTRL------------------VCKVLRHFKSPETAWHFFCWVA 397
           W  +++SLL D      +RL                  V K +   K P+ A  FF W  
Sbjct: 29  WVHQIMSLLLDGPVDMESRLDLFCNKFLIKLSPNFVSFVLKSMELQKRPDLALKFFTWAG 88

Query: 398 YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA 457
            Q  YTH++      + +LA +G ++ V  +  K R  G  +  S    +I  +G     
Sbjct: 89  KQKKYTHNLQCYVSSIDVLAINGDLDNVKSVFCKFRGMGFLMNVSAANSLIKSFGSLGMV 148

Query: 458 DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
           +  L  +   +      S F     Y+ LL  L        A  VLE M    I PDV T
Sbjct: 149 EELLWVWRGMKENGVEPSLFT----YNFLLNGLVNSVFIESAERVLEVMENGKIGPDVVT 204

Query: 518 FSGLMYHFALQGD-EKIVQKLFSMVRQNGVEPDAYMFKVLIQA-------------YCKY 563
           ++ ++  +   G  +K  +K   M  +N V PD   +  LIQA             Y + 
Sbjct: 205 YNTMIKGYCQVGKTQKAFEKFRDMELRN-VAPDKITYMTLIQACYAEGDFDLCLSLYHEM 263

Query: 564 LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
             N   +P  A   L+   L KEG+  E  AV E+
Sbjct: 264 DENGLEIPPHAY-SLVIGGLCKEGKCVEGYAVFEK 297



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 90/218 (41%), Gaps = 7/218 (3%)

Query: 81  NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNF 140
           N   A+ + E +K       +  T   +   + KS R   L   +  +   +   V+VN 
Sbjct: 322 NMGEAMLLFERMKKE-GLEPDVVTYGVVVNCMCKSGR---LDEAMEYLEFCRVNGVAVNA 377

Query: 141 M---NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           M   +L+     +G +      + E  ++     +  YN ++   AK GK  EA+  F++
Sbjct: 378 MLYSSLIDGLGKAGRVHEAEKLFEEMVKKGCPPDSYCYNALIDALAKCGKTDEALAFFKR 437

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + DEG      TYT+MI  L    K + AL+++  +    I  T+  +  L  G     +
Sbjct: 438 MEDEGCDQTVYTYTIMINGLFREHKNEEALKMWDMMIDKGITPTAAAFRALSIGLCLSGK 497

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGA 295
              A  LL+E+   G  P  A    L  + + G I+ A
Sbjct: 498 VARACKLLDELAPMGVIPETAFEDMLNVLCKAGRIKEA 535



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 99/231 (42%), Gaps = 10/231 (4%)

Query: 67  LDPFIVTHA-----LRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHEL 121
           L+P +VT+      +  +   D A+  +E  + N   + N     +L   L K+ R HE 
Sbjct: 338 LEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVN-GVAVNAMLYSSLIDGLGKAGRVHEA 396

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
           + L  ++        S  +  L+   +  G  +  L+ +          +  +Y I+++ 
Sbjct: 397 EKLFEEMVKKGCPPDSYCYNALIDALAKCGKTDEALAFFKRMEDEGCDQTVYTYTIMING 456

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL-PLMRIKR 240
             +  KN EA++ +  +ID+G  P +  +  +   L   GK+  A ++   L P+  I  
Sbjct: 457 LFREHKNEEALKMWDMMIDKGITPTAAAFRALSIGLCLSGKVARACKLLDELAPMGVIPE 516

Query: 241 TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK-FPGRAMRVALERMQEMG 290
           T+ + ++ V    G  R  EA  L +   D G+  PGR   V +  +++ G
Sbjct: 517 TAFEDMLNVLCKAG--RIKEACKLADGFVDRGREIPGRVRTVLINALRKAG 565


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 116/533 (21%), Positives = 205/533 (38%), Gaps = 64/533 (12%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           +Q T   L   L+K+ +      L+ ++  S      V +  L+      G +   L   
Sbjct: 159 DQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLC 218

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           ++  +R  LL   +YN ++      G+  E  +   +++ E   P+  T+ ++I+ L   
Sbjct: 219 SQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKE 278

Query: 221 GKLDSALEVFSALPLMRIKRTSK----QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
           G++   LE    L +M  KR  K     Y  L+EG+   E   EA+ L N M   G  P 
Sbjct: 279 GRI---LEAQGVLAMMS-KRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPD 334

Query: 277 -RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIA 335
                V ++   +   +  A    +E+     +  +  Y    D         NSG RI+
Sbjct: 335 VLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLID------GLCNSG-RIS 387

Query: 336 YGVQLKPWLDPKALANTLDEWSPEVVS--LLADAKFVWTTRLVCKVLRHFKSPETAWHFF 393
           +  +L   +   A         P+VV+  +L DA        +CK  R  ++        
Sbjct: 388 HVKKLLDEMHGSA-------QPPDVVTYNILIDA--------LCKEGRILEALGVL---- 428

Query: 394 CWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGI 453
             +  + G   ++     M+       +V +   +  ++   G+        ++I+ Y  
Sbjct: 429 -VMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCK 487

Query: 454 SKKADAALKAFHDDR--TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
           ++  D A+  F + R   L   I+       Y+SL+  L    R      +L+EM  SG 
Sbjct: 488 TEMVDEAIVLFKEMRHKNLIPDIAS------YNSLIDGLCNLGRIPHVQELLDEMCDSGQ 541

Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ--NGVEPDAYMFKVLIQAYC-------- 561
            PDV T++ L+  F      +   K  S+ RQ   G+ PD Y    ++   C        
Sbjct: 542 SPDVITYNILLDAFC---KTQPFDKAISLFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMA 598

Query: 562 ----KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLAL 610
               K+L      P+  T  +L  +L K+G   EA  +  + E  ND P  A+
Sbjct: 599 EDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMED-NDRPPDAI 650



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 94/233 (40%), Gaps = 24/233 (10%)

Query: 393 FCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYG 452
           FC      GY  D +    ++  L+++G ++    L+ ++    ++        +ID  G
Sbjct: 147 FCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALID--G 204

Query: 453 ISKKADAALKAFHDDRTLCGPISKFKLML---LYSSLLRTLTKCKRDFDAINVLEEMIFS 509
           + K    +     D   LC  I +  ++L    Y+SL+       R  +   +L +M+  
Sbjct: 205 LCKDGFVS-----DALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRE 259

Query: 510 GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC-------- 561
            + PD  TF+ L+     +G     Q + +M+ + G +PD   +  L++ YC        
Sbjct: 260 NVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEA 319

Query: 562 ----KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV-EERCEKINDVPSLA 609
                 +    L PD     +L     K     EA  + +E C K N VP++A
Sbjct: 320 RELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNK-NLVPTIA 371



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 73/179 (40%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
           N   +  T + L   L K  R  E + ++  +S        V +  LM+ Y +  ++   
Sbjct: 260 NVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEA 319

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
              +N   +R       +YN+++  Y KT    EA+  F+++ ++  +P   +Y  +I+ 
Sbjct: 320 RELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDG 379

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           L N G++    ++   +           Y IL++      R  EA  +L  M   G  P
Sbjct: 380 LCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKP 438



 Score = 39.7 bits (91), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 42/206 (20%), Positives = 81/206 (39%), Gaps = 32/206 (15%)

Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDD 467
             +K+L  + R GH      L  +L+S G+    +T  ++I+ Y            FH  
Sbjct: 57  VFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCY------------FHQS 104

Query: 468 RT-----LCGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
            T     L   I K      ++ +++++         F A++  + ++  G + D  T+ 
Sbjct: 105 HTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYG 164

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--YLSNS---------- 567
            L+   +  G  K    L   + ++ V+P+  M+  LI   CK  ++S++          
Sbjct: 165 TLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGER 224

Query: 568 NLMPDAATKELLKKSLWKEGRRKEAA 593
            ++ DA T   L       GR +E  
Sbjct: 225 GILLDAVTYNSLIDGCCSVGRWQEVT 250


>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
 gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
          Length = 577

 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 89/482 (18%), Positives = 186/482 (38%), Gaps = 64/482 (13%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  ++  +  +G ++      +E ++R   +    ++ ++    + G+  EA+E F+ + 
Sbjct: 2   YTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMG 61

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQ---------YLILVE 250
           +E + PN  TY  ++  L    ++D  LE+F  +     KR             Y  +++
Sbjct: 62  EECS-PNVITYNTVVNGLCKANRIDEGLELFDDME----KRYEASHGCEPDVISYSTVID 116

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIK 309
                +R D+A      MR  G  P      +L + + ++  +  A   L ++  +  + 
Sbjct: 117 ALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVP 176

Query: 310 NVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDE-WSPEVVSLLADAK 368
              YY               + V   +  Q KP    + L +  ++ +   ++   A   
Sbjct: 177 RAMYY---------------NAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLH 221

Query: 369 FVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRL 428
            +W               E A  FF     + G   +V      +  L + G V+   R+
Sbjct: 222 ALWKN----------DEQEKACQFF-ERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRI 270

Query: 429 IAKLRSDGMRLPFSTIRLIIDFY---GISKKADAALKAFHDDRTLCGPISKFKLMLLYSS 485
           + ++    +     T   IID +   G   KAD           +  P++       + +
Sbjct: 271 LLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVT-------FMT 323

Query: 486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
           LL   ++ K+  +A  V E+M+ +G +P +QT++ LM         +   +++  +++  
Sbjct: 324 LLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKK 383

Query: 546 VEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
            +PDA  +  LIQ  C+             +   N++P+ A    L + L K+G   EA 
Sbjct: 384 RQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEAC 443

Query: 594 AV 595
           +V
Sbjct: 444 SV 445



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/221 (19%), Positives = 93/221 (42%), Gaps = 7/221 (3%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEAL---KSNPNFSHNQSTLHALATVLAKSQRNHELK 122
           ++D   + HAL      + A    E L      PN       +H L     K+ +  E  
Sbjct: 213 IIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLC----KAGKVDEAY 268

Query: 123 TLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVY 182
            ++ ++  SK     + + +++  +  +G ++     +        +    ++  ++  +
Sbjct: 269 RILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGF 328

Query: 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
           ++  K+ EA      +++ G IP  +TY V+++ +     ++SALE++  +   + +  +
Sbjct: 329 SEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDA 388

Query: 243 KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
             Y  L++      R DEAK  L+ M  D   P  A+  AL
Sbjct: 389 NTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHAL 429



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 41/200 (20%), Positives = 78/200 (39%), Gaps = 7/200 (3%)

Query: 72  VTHALRSAPNADSALSI---MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDI 128
           V  AL  A   D A      M A+   PN      T  +L   L K  R  E  +L+  +
Sbjct: 114 VIDALCKAQRVDKAYEYFKRMRAVGCAPNVV----TYSSLIDGLCKVDRVDEAYSLLMQL 169

Query: 129 SSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN 188
                +  ++ +  ++  +   G     L      +++   ++   +N ++    K  + 
Sbjct: 170 KGEDMVPRAMYYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQ 229

Query: 189 FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
            +A + F +++  G  PN  TY V +  L   GK+D A  +   +   ++      Y  +
Sbjct: 230 EKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSI 289

Query: 249 VEGFVGVERFDEAKSLLNEM 268
           ++GF    R D+A  +   M
Sbjct: 290 IDGFCKAGRMDKADDVFTRM 309



 Score = 42.4 bits (98), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 91/222 (40%), Gaps = 18/222 (8%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           ++   +  A + +SAL I   +K       + +T   L   L +++R  E K        
Sbjct: 358 VLMDCVCGADSVESALEIYHKMKRKKR-QPDANTYAPLIQCLCRARRVDEAK-------- 408

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
            +FL+V +   N++   +    L  VL    E  +   +L     N+V     K G+  E
Sbjct: 409 -EFLDV-MEADNVVPNGAICHALVEVLCKQGEVDEACSVLD----NVVE--ICKAGEPDE 460

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           AVE   Q++ +G  P+  TY  ++  L  L ++DSA+  F  +           Y +L+ 
Sbjct: 461 AVEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGCAPGLVTYTLLIG 520

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGF 291
                +  D+A  +   M   G  P  + MR     +++ G+
Sbjct: 521 EACSADMADDAFRIFEAMVAAGFTPQAQTMRTLSSCLRDAGY 562


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/416 (19%), Positives = 161/416 (38%), Gaps = 45/416 (10%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAI--PNSRTYTVMIEHLVNLGKLDSALEVFS 231
           SY IV+       K+ +A E  R + + GA+  PN+  Y  +I+     G ++ A ++F+
Sbjct: 181 SYCIVLKSLCSDRKSGQADELLRMMAEGGAVCLPNAVAYNTVIDGFFKEGDVNKACDLFN 240

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG--------------- 276
            +    I      Y  +V         D+A+++L +M D G  P                
Sbjct: 241 EMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTG 300

Query: 277 ---RAMRVALERMQEMGFIQGA---NEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNS 330
               A+RV+ ++M   G +      N  +  +    +IK+ R   D       + D    
Sbjct: 301 QWKEAVRVS-KKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTD---- 355

Query: 331 GVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW 390
               +Y + L  +     L +  + ++  +   +A    ++   +  K        + A 
Sbjct: 356 --IFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLI--KAYAKCGMLDRAT 411

Query: 391 HFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF 450
             F  +  Q G   DV     ++  L R G ++       ++   G+    ST   +I  
Sbjct: 412 IIFNEMREQ-GVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQG 470

Query: 451 YG----ISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
           +     + K  D  L+    ++ +   I  F        ++  L K  R  DA N+ +  
Sbjct: 471 FCTHGDLLKAKDLVLQMM--NKGMRPDIGCFNF------IINNLCKLGRVMDAQNIFDFT 522

Query: 507 IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           I  G+ P+V  ++ LM  + L G  +   ++F ++   G++P+  ++  L+  YCK
Sbjct: 523 ISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCK 578



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 8/137 (5%)

Query: 143 LMQWYSTSGDL----ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
           L+Q + T GDL    +LVL   N+  +         +N +++   K G+  +A   F   
Sbjct: 467 LIQGFCTHGDLLKAKDLVLQMMNKGMRP----DIGCFNFIINNLCKLGRVMDAQNIFDFT 522

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
           I  G  PN   Y  +++    +GK+++AL VF  +    I+     Y  LV G+  V R 
Sbjct: 523 ISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRI 582

Query: 259 DEAKSLLNEMRDDGKFP 275
           DE  SL  E+   G  P
Sbjct: 583 DEGLSLFREILHKGIKP 599



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 64/133 (48%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           ++  Y+T G L  +   +N          +  +N+++  YAK G    A   F ++ ++G
Sbjct: 362 MLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQG 421

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  TY+ +I  L  +GK+D A+E F+ +    +  +   Y  L++GF       +AK
Sbjct: 422 VEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAK 481

Query: 263 SLLNEMRDDGKFP 275
            L+ +M + G  P
Sbjct: 482 DLVLQMMNKGMRP 494



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 71/166 (42%), Gaps = 1/166 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+  Y   G ++  LS + E   +    ST  YNI++    + G+   A   F +
Sbjct: 567 VVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAKVKFHE 626

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + + G   +  TY++++  L      D A+ +F  L  M +K       I++ G   + R
Sbjct: 627 MTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVKIDITTLNIMIAGMFQIRR 686

Query: 258 FDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
            +EAK L   +   G  P      + +  + + G ++ A++    M
Sbjct: 687 VEEAKDLFASISRSGLVPSVVTYSIMMTNLIKEGLVEEADDMFSSM 732



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 63/148 (42%)

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           ++S   L   V   +LM      G ++     ++    + +     SY I+++ YA  G 
Sbjct: 312 MTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGC 371

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
             +  E F  ++ +G  P+S  + V+I+     G LD A  +F+ +    ++     Y  
Sbjct: 372 LVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYST 431

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           ++     + + D+A    N+M D G  P
Sbjct: 432 VIAALCRIGKMDDAVEKFNQMIDQGVAP 459



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 84/214 (39%), Gaps = 36/214 (16%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   DV  L  ++  L +HG ++    +   +   G +    + +++++ Y        A
Sbjct: 316 GILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGY--------A 367

Query: 461 LKAFHDDRTLCGPISKFKLML---------LYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
            K    D T       F LML         +++ L++   KC     A  +  EM   G+
Sbjct: 368 TKGCLVDLT-----ELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGV 422

Query: 512 VPDVQTFSGLMYHFALQGD-EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------- 563
            PDV T+S ++      G  +  V+K   M+ Q GV P    +  LIQ +C +       
Sbjct: 423 EPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQ-GVAPSISTYHFLIQGFCTHGDLLKAK 481

Query: 564 -----LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                + N  + PD      +  +L K GR  +A
Sbjct: 482 DLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDA 515



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 109/594 (18%), Positives = 208/594 (35%), Gaps = 97/594 (16%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           +  A R+A   D  L  M  L   P+       L +L +   KS +  EL  ++ +  + 
Sbjct: 153 LCEAKRTAEALDILLHRMPHLGCVPDVFSYCIVLKSLCSD-RKSGQADELLRMMAEGGAV 211

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
              N +V +  ++  +   GD+      +NE  QR       +YN V++   K     +A
Sbjct: 212 CLPN-AVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKA 270

Query: 192 VETFRQVIDEGAIPNSRTYTVMI-----------------------------------EH 216
               RQ++D+G +P++ TY  +I                                     
Sbjct: 271 EAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMAS 330

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP- 275
           L   GK+  A +VF ++ +   K     Y I++ G+       +   L N M  DG  P 
Sbjct: 331 LCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPD 390

Query: 276 GRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED--------GSDDDEDENDD 327
                V ++   + G +  A     EM       +V  Y          G  DD  E   
Sbjct: 391 SHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVE--- 447

Query: 328 NNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPE 387
                      +    +D + +A ++  +   +         +    LV +++     P 
Sbjct: 448 -----------KFNQMID-QGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRP- 494

Query: 388 TAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLI 447
                            D+     ++  L + G V     +     S G+         +
Sbjct: 495 -----------------DIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTL 537

Query: 448 IDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMI 507
           +D Y +  K + AL+ F  D  +   I     +++Y +L+    K  R  + +++  E++
Sbjct: 538 MDGYCLVGKMENALRVF--DVMVSAGIQPN--VVVYGTLVNGYCKVGRIDEGLSLFREIL 593

Query: 508 FSGIVPDVQTFSGLMYHFALQGDEKIVQKL-FSMVRQNGVEPDAYMFKVLIQAY----C- 561
             GI P   T   ++ H   Q    +  K+ F  + ++G+  D Y + +++       C 
Sbjct: 594 HKGIKPST-TLYNIILHGLFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVLGGLFKNSCS 652

Query: 562 -------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
                  K L   N+  D  T  ++   +++  R +EA  +     +   VPS+
Sbjct: 653 DEAILLFKELHAMNVKIDITTLNIMIAGMFQIRRVEEAKDLFASISRSGLVPSV 706


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 78/163 (47%)

Query: 113 AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
            K +R  E K+L+ ++S  +    +V +  LMQ     G  +  L+ + E      L   
Sbjct: 383 CKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDL 442

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            +Y+ ++    K G   EA++  + + +    P+   Y ++IE +   GKL+ A E+FS 
Sbjct: 443 MTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSK 502

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           L    I+ T + Y I+++G +     DEA  L  +M DDG  P
Sbjct: 503 LFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLP 545



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 88/484 (18%), Positives = 185/484 (38%), Gaps = 72/484 (14%)

Query: 99  SHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLS 158
           +HN  +L+ L   L +        +++G +        ++ F  L+      G+++  + 
Sbjct: 124 THNVYSLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVG 183

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
            +NE  +R       SY+ V++   K+G    A++  R++ ++G  PN   YT +I+ L 
Sbjct: 184 LFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLC 243

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR- 277
               ++ A+++ S +    I      Y  ++ GF  +   +EA  L NEM      P   
Sbjct: 244 KDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTV 303

Query: 278 AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE---DGS--DDDEDEN------- 325
              + ++ + + G +  A      M       N   Y    DG   ++  DE        
Sbjct: 304 TFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIM 363

Query: 326 -DDNNSGVRIAYGVQLKPWLDPKAL--ANTL------DEWSPEVVSLLADAKFVWTTRLV 376
            D   + V  +Y + +  +   + L  A +L       E +P+ V+      +    + +
Sbjct: 364 VDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVT------YSTLMQGL 417

Query: 377 CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
           C+V R    P+ A + F  +    G   D+     +L  L +HGH++   +L+  ++   
Sbjct: 418 CQVGR----PQEALNLFKEMC-SSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESK 472

Query: 437 MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
           +        ++I+   I+ K + A + F                                
Sbjct: 473 IEPDIVLYNILIEGMFIAGKLEVAKELF-------------------------------- 500

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
                   ++   GI P ++T++ ++     +G      +LF  +  +G  P++  + V+
Sbjct: 501 -------SKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVI 553

Query: 557 IQAY 560
           IQ +
Sbjct: 554 IQGF 557



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 14/138 (10%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS+L++ L +  R  +A+N+ +EM  SG++PD+ T+S L+      G      KL   ++
Sbjct: 410 YSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQ 469

Query: 543 QNGVEPDAYMFKVLIQA-------------YCKYLSNSNLMPDAATKELLKKSLWKEGRR 589
           ++ +EPD  ++ +LI+              + K  ++  + P   T  ++ K L KEG  
Sbjct: 470 ESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADG-IQPTIRTYTIMIKGLLKEGLS 528

Query: 590 KEAAAVEERCEKINDVPS 607
            EA  +  + E    +P+
Sbjct: 529 DEAYELFRKMEDDGFLPN 546



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 90/210 (42%), Gaps = 33/210 (15%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G TH+VY+L  ++  L R  HV     ++ K+   G++    T   +I+   I  +   A
Sbjct: 122 GVTHNVYSLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEA 181

Query: 461 LKAFHD----------------DRTLC-GPISKFKLMLL--------------YSSLLRT 489
           +  F++                   LC    +   L LL              Y++++ +
Sbjct: 182 VGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDS 241

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
           L K     DA+++L EM+  GI PDV T+S +++ F   G       LF+ +    V P+
Sbjct: 242 LCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPN 301

Query: 550 AYMFKVLIQAYCK--YLSNSNLMPDAATKE 577
              F +L+   CK   +S +  + +A TK+
Sbjct: 302 TVTFTILVDGLCKEGMVSEARCVFEAMTKK 331



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 1/186 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A S++  + S    + +  T   L   L +  R  E   L  ++ SS  L   + +  
Sbjct: 389 DEAKSLLVEM-SEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYST 447

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+      G L+  L      ++         YNI++      GK   A E F ++  +G
Sbjct: 448 LLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADG 507

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P  RTYT+MI+ L+  G  D A E+F  +        S  Y ++++GF+  +    A 
Sbjct: 508 IQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAI 567

Query: 263 SLLNEM 268
            L++EM
Sbjct: 568 RLIDEM 573



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 15/122 (12%)

Query: 493 CKRDF--DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA 550
           CK     +A  V E M   G  P+  T++ LM  + L       QK+  ++   G  P  
Sbjct: 313 CKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVV 372

Query: 551 YMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAV-EE 597
           + + +LI  YCK             +S   L PD  T   L + L + GR +EA  + +E
Sbjct: 373 HSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKE 432

Query: 598 RC 599
            C
Sbjct: 433 MC 434



 Score = 40.4 bits (93), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 20/191 (10%)

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD--DRTLCGP 473
           L + G V     +   +   G      T   ++D Y ++ + D A K      D+  C P
Sbjct: 312 LCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKG-CAP 370

Query: 474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
           +        Y+ L+    K +R  +A ++L EM    + PD  T+S LM      G  + 
Sbjct: 371 VVHS-----YNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQE 425

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKK 581
              LF  +  +G+ PD   +  L+   CK+            +  S + PD     +L +
Sbjct: 426 ALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIE 485

Query: 582 SLWKEGRRKEA 592
            ++  G+ + A
Sbjct: 486 GMFIAGKLEVA 496



 Score = 38.9 bits (89), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 53/108 (49%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L++    +G LE+    +++        +  +Y I++    K G + EA E FR++ D+G
Sbjct: 483 LIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDG 542

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
            +PNS +Y V+I+  +      +A+ +   +   R    S  + +L++
Sbjct: 543 FLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLLD 590


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 112/252 (44%), Gaps = 10/252 (3%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           L+D + + + +  A +  + +S M A    PN +H+  T+        K +   E  +L 
Sbjct: 319 LMDGYCLVNQVNKAKHVLNTISQMGAA---PN-AHSYCTM---INGFCKIKMVDEALSLF 371

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
            D+         V + +L+     SG +       +E     +  +  +YN ++    K 
Sbjct: 372 NDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKN 431

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
               +A+   +++ D+G  P+  T+ ++I  L  +G+L +A +VF  L        +  Y
Sbjct: 432 HHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTY 491

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPD 305
            I+V G      FDEA++LL++M D+G  P     V  E + +  F +  NE   ++L +
Sbjct: 492 NIMVNGLCKEGLFDEAEALLSKMDDNGIIPD---AVTYETLIQALFHKDENEKAEKLLRE 548

Query: 306 KRIKNVRYYEDG 317
              ++V Y  +G
Sbjct: 549 MIARDVVYALEG 560



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 46/83 (55%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +++Y++++ +L K K   DA  +  +MI   I PDV TFS L+Y F + G  +    LF 
Sbjct: 208 VVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFR 267

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK 562
            +    + PD Y F +L+ A CK
Sbjct: 268 EMVLKNINPDYYTFNILVDALCK 290



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 1/178 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F  L+  +   G LE     + E   +       ++NI++    K G    A      
Sbjct: 244 VTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVV 303

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++ EG +PN  TY+ +++    + +++ A  V + +  M     +  Y  ++ GF  ++ 
Sbjct: 304 MMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKM 363

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
            DEA SL N+M+  G  P +    +L + + + G I  A E + EM  + +  N+  Y
Sbjct: 364 VDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTY 421



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 85/472 (18%), Positives = 175/472 (37%), Gaps = 83/472 (17%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           ++ F  L++    +G ++  L   +        L   SY  +++   K G+   A++  R
Sbjct: 138 TITFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLR 197

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           ++  +    N   Y  +I+ L     +  A E++S +   +I      +  L+ GF  V 
Sbjct: 198 KIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVG 257

Query: 257 RFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
           + +EA  L  EM      P      + ++ + + G ++GA   L  M+ +  + NV    
Sbjct: 258 QLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNV---- 313

Query: 316 DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL 375
                                 V     +D   L N +++ +  V++ ++          
Sbjct: 314 ----------------------VTYSSLMDGYCLVNQVNK-AKHVLNTISQMGAAPNAHS 350

Query: 376 VCKVLRHF---KSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKL 432
            C ++  F   K  + A   F  + ++ G   D      ++  L + G +     L+ ++
Sbjct: 351 YCTMINGFCKIKMVDEALSLFNDMQFK-GIAPDKVTYNSLIDGLCKSGRISYAWELVDEM 409

Query: 433 RSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK 492
             +G      T   +ID         A  K  H D+                        
Sbjct: 410 HDNGQPANIFTYNCLID---------ALCKNHHVDQ------------------------ 436

Query: 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYM 552
                 AI +++++   GI PD+ TF+ L+Y     G  K  Q +F  +   G   +A+ 
Sbjct: 437 ------AIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWT 490

Query: 553 FKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           + +++   CK             + ++ ++PDA T E L ++L+ +   ++A
Sbjct: 491 YNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYETLIQALFHKDENEKA 542



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 41/203 (20%), Positives = 80/203 (39%), Gaps = 16/203 (7%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           D Y    ++  L + G+++    ++  +  +G+     T   ++D Y +  + + A    
Sbjct: 277 DYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVL 336

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
           +    +    +       Y +++    K K   +A+++  +M F GI PD  T++ L+  
Sbjct: 337 NTISQMGAAPNAHS----YCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDG 392

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPD 572
               G      +L   +  NG   + + +  LI A C            K + +  + PD
Sbjct: 393 LCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPD 452

Query: 573 AATKELLKKSLWKEGRRKEAAAV 595
             T  +L   L K GR K A  V
Sbjct: 453 MYTFNILIYGLCKVGRLKNAQDV 475



 Score = 38.9 bits (89), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 39/210 (18%), Positives = 83/210 (39%), Gaps = 5/210 (2%)

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
           NP++     T + L   L K       K ++  +     +   V + +LM  Y     + 
Sbjct: 275 NPDYY----TFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVN 330

Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
                 N   Q     +  SY  +++ + K     EA+  F  +  +G  P+  TY  +I
Sbjct: 331 KAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLI 390

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
           + L   G++  A E+   +           Y  L++        D+A +L+ +++D G  
Sbjct: 391 DGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQ 450

Query: 275 PGR-AMRVALERMQEMGFIQGANEFLREML 303
           P      + +  + ++G ++ A +  +++L
Sbjct: 451 PDMYTFNILIYGLCKVGRLKNAQDVFQDLL 480


>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 804

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 106/517 (20%), Positives = 200/517 (38%), Gaps = 57/517 (11%)

Query: 98  FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVL 157
           F+ ++ T +AL  V  KS+R  E   ++ ++ ++ F   SV + +L+  Y+  G LE  L
Sbjct: 295 FTPDKVTYNALLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEAL 354

Query: 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217
               +   +       +Y  ++S + K GK+  A++ F ++   G  PN  T+  +I+  
Sbjct: 355 DLKTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMH 414

Query: 218 VNLGKLDSALEVFSALPLMRIKR--TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            N GK    ++VF  + L        +   L+ V G  G++   +   +  EM+  G   
Sbjct: 415 GNRGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMD--SQVSGIFKEMKRAGFVA 472

Query: 276 GR-AMRVALERMQEMGFIQGANEFLREML-----PDKRIKNV--------RYYEDGSDDD 321
            R      +      G    A    + ML     PD    N           +E      
Sbjct: 473 ERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVL 532

Query: 322 EDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLR 381
            +  D       ++Y   L  + + K +   ++ ++ E+ S   +   V    LV    +
Sbjct: 533 AEMEDGRCKPNELSYSSLLHAYANGKEIER-MNAFAEEIYSGSVETHAVLLKTLVLVNSK 591

Query: 382 HFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPF 441
                ET   F      + G + D+  L  ML+I  R   V     ++  +         
Sbjct: 592 SDLLIETERAFL--ELRRRGISPDITTLNAMLSIYGRKQMVAKAHEILNFMHETRFTPSL 649

Query: 442 STIRLIIDFYGIS---KKADAAL-----KAFHDDRTLCGPISKFKLMLLYSSLLRTLTKC 493
           +T   ++  Y  S   +K++  L     K    DR            + Y++++    + 
Sbjct: 650 TTYNSLMYMYSRSENFQKSEEILREVLEKGMKPDR------------ISYNTVIYAYCRN 697

Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR---QNGVEPDA 550
            R  +A  +  EM  S +VPDV T++  +  +A    + +  +   +VR   + G +PD 
Sbjct: 698 GRMKEASRIFSEMKDSALVPDVVTYNTFIATYAA---DSMFAEAIDVVRYMIKQGCKPDQ 754

Query: 551 YMFKVLIQAYCK---------YLSN-SNLMPDAATKE 577
             +  ++  YCK         ++ N SNL P  + +E
Sbjct: 755 NTYNSIVDWYCKLDQRHEANSFVKNLSNLDPHVSKEE 791



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 73/161 (45%), Gaps = 6/161 (3%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D+Y    +++   R    E    L  +++ +G      T   ++D +G S++   A
Sbjct: 259 GVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNALLDVFGKSRRPQEA 318

Query: 461 LKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           +K   + +     P S     + Y+SL+    K     +A+++  +M+  GI PDV T++
Sbjct: 319 MKVLQEMEANGFSPTS-----VTYNSLISAYAKGGLLEEALDLKTQMVHKGIKPDVFTYT 373

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
            L+  F   G +    ++F  +R  G +P+   F  LI+ +
Sbjct: 374 TLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMH 414



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 65/162 (40%), Gaps = 3/162 (1%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   DVYA   ++   +  G       L  K++ DG      T  ++++ YG      + 
Sbjct: 188 GVHIDVYAYTCLINAYSSSGRYRDAVNLFNKMQQDGCNPTLITYNVVLNVYGKMGMPWSN 247

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           + A  +     G       +  Y++L+    +     +A+++ ++M   G  PD  T++ 
Sbjct: 248 VTALVEAMRSRGVAPD---LYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNA 304

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           L+  F      +   K+   +  NG  P +  +  LI AY K
Sbjct: 305 LLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAK 346



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 35/183 (19%), Positives = 78/183 (42%), Gaps = 10/183 (5%)

Query: 89  MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVS---VNFMNLMQ 145
           M A+   PN      T +AL  +     +  E+  +  DI   K  N S   V +  L+ 
Sbjct: 395 MRAVGCKPNIC----TFNALIKMHGNRGKFAEMMKVFDDI---KLCNCSPDIVTWNTLLA 447

Query: 146 WYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP 205
            +  +G    V   + E ++   +   +++N ++S Y++ G   +A+  ++ +++ G +P
Sbjct: 448 VFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVP 507

Query: 206 NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL 265
           +  TY  ++  L   G  + + +V + +   R K     Y  L+  +   +  +   +  
Sbjct: 508 DLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANGKEIERMNAFA 567

Query: 266 NEM 268
            E+
Sbjct: 568 EEI 570



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 37/183 (20%), Positives = 74/183 (40%), Gaps = 22/183 (12%)

Query: 425 VDRLIAKLRSDGMRLPFSTIRLIIDFYG---ISKKADAALKAFHDDRTLCGPISKFKLML 481
            +R   +LR  G+    +T+  ++  YG   +  KA   L   H+ R           + 
Sbjct: 598 TERAFLELRRRGISPDITTLNAMLSIYGRKQMVAKAHEILNFMHETRFTPS-------LT 650

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
            Y+SL+   ++ +    +  +L E++  G+ PD  +++ ++Y +   G  K   ++FS +
Sbjct: 651 TYNSLMYMYSRSENFQKSEEILREVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEM 710

Query: 542 RQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRR 589
           + + + PD   +   I  Y             +Y+      PD  T   +     K  +R
Sbjct: 711 KDSALVPDVVTYNTFIATYAADSMFAEAIDVVRYMIKQGCKPDQNTYNSIVDWYCKLDQR 770

Query: 590 KEA 592
            EA
Sbjct: 771 HEA 773



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 86/225 (38%), Gaps = 13/225 (5%)

Query: 336 YGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCW 395
           YG    PW +  AL   +          +A   + + T + C   R     E A H F  
Sbjct: 238 YGKMGMPWSNVTALVEAMRSRG------VAPDLYTYNTLISC--CRRGSLYEEAVHLFQQ 289

Query: 396 VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455
           +  + G+T D      +L +  +    +   +++ ++ ++G      T   +I  Y    
Sbjct: 290 MKLE-GFTPDKVTYNALLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGG 348

Query: 456 KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
             + AL    D +T          +  Y++LL    K  +D  AI V  EM   G  P++
Sbjct: 349 LLEEAL----DLKTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNI 404

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
            TF+ L+     +G    + K+F  ++     PD   +  L+  +
Sbjct: 405 CTFNALIKMHGNRGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVF 449



 Score = 40.0 bits (92), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 1/123 (0%)

Query: 440 PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDA 499
           P S I  II   G S K D AL  FH  RT     + F    +   +++ L K  R   A
Sbjct: 119 PASDILGIIKALGFSNKCDLALAVFHWVRTNNSNTNLFSSSAI-PVIIKILGKAGRVSSA 177

Query: 500 INVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
            ++L  +   G+  DV  ++ L+  ++  G  +    LF+ ++Q+G  P    + V++  
Sbjct: 178 ASLLLALQNDGVHIDVYAYTCLINAYSSSGRYRDAVNLFNKMQQDGCNPTLITYNVVLNV 237

Query: 560 YCK 562
           Y K
Sbjct: 238 YGK 240


>gi|225445998|ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
           [Vitis vinifera]
 gi|297735424|emb|CBI17864.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 106/521 (20%), Positives = 205/521 (39%), Gaps = 73/521 (14%)

Query: 67  LDPFIVTHAL------RSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHE 120
           L P +VT+ +      +   + +  L +++ ++SN     ++ T   + +   +     E
Sbjct: 240 LSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSN-GLEFDEFTCSTVISACGREGLLDE 298

Query: 121 LKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS 180
            +     + S  ++  +  + +L+Q +  +G     LS   E  +        +YN +++
Sbjct: 299 ARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVA 358

Query: 181 VYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR 240
            Y + G + E  +    +I +G +PN+ TYT +I      GK D AL  F  +       
Sbjct: 359 AYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVP 418

Query: 241 TSKQYLILVEGFVGVE-RFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEF 298
               Y  ++ G +G + R +E   +L +MR +G  P        L      G  +  N  
Sbjct: 419 NVCTYNAIL-GMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRV 477

Query: 299 LREML-----PDKRIKNV---RYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDP---- 346
            REM      P++   N     Y   GS  D          V   Y   +K    P    
Sbjct: 478 FREMKSCGFEPNRDTFNALIGAYGRCGSQID----------VVKMYEEMIKAGFTPCVTT 527

Query: 347 -KALANTL---DEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGY 402
             AL N L    +W     S++ D K            + FK  ET++            
Sbjct: 528 YNALLNALARRGDWEA-AESVILDMK-----------SKGFKPNETSYSL---------- 565

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL- 461
                    ML   A+ G+   ++++  ++  +G   P   +   +      ++A   + 
Sbjct: 566 ---------MLNCYAKGGNGRGIEKIEEEIY-NGHIFPSWILLRTLVLANFKRRALMGME 615

Query: 462 KAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL 521
           +AF +    C    K  L +L++S+L    K K    A  +L  +  SG+ PD+ T++ L
Sbjct: 616 RAFQE---FCKHGYKPDL-VLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSL 671

Query: 522 MYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           M  +A  G+    +++   ++++G +PD   +  +I+ +C+
Sbjct: 672 MDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCR 712



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 81/179 (45%), Gaps = 14/179 (7%)

Query: 387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
           E A+  FC   Y+P    D+     ML+I A++   +    ++  +R  G++    T   
Sbjct: 615 ERAFQEFCKHGYKP----DLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNS 670

Query: 447 IIDFY---GISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVL 503
           ++D Y   G   K +  LK           +S       Y+++++   +     +AI  L
Sbjct: 671 LMDMYARGGECWKGEEILKGIQKSGGKPDLVS-------YNTVIKGFCRQGLMQEAIRTL 723

Query: 504 EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            EM  SGI P + T++  +  ++ +G    V+++ S + Q+   P+   +K+++  YCK
Sbjct: 724 SEMTISGIRPCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCK 782



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/95 (23%), Positives = 45/95 (47%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN +M +YA+ G+ ++  E  + +   G  P+  +Y  +I+     G +  A+   S +
Sbjct: 667 TYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEM 726

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
            +  I+     Y   V G+ G   F E + +++ M
Sbjct: 727 TISGIRPCIVTYNTFVAGYSGKGMFSEVEEVISYM 761



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 84/191 (43%), Gaps = 13/191 (6%)

Query: 105 LHALATVLAKSQ---RNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL---ELVLS 158
            +++ ++ AK++   R HE+  LI +      L   V + +LM  Y+  G+    E +L 
Sbjct: 633 FNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDL---VTYNSLMDMYARGGECWKGEEILK 689

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
              +   +  L+S   YN V+  + + G   EA+ T  ++   G  P   TY   +    
Sbjct: 690 GIQKSGGKPDLVS---YNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYS 746

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD-DGKFPGR 277
             G      EV S +     +     Y I+V+G+   +++ EA   ++ + + D  F  +
Sbjct: 747 GKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKGKKYKEAMDFVSNITEMDKSFDDQ 806

Query: 278 AMRVALERMQE 288
           ++R    R++E
Sbjct: 807 SLRRLTFRIRE 817



 Score = 42.7 bits (99), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 18/177 (10%)

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLL 487
           L+ ++RS+G+     T   +I   G     D A K F   ++       F     Y+SLL
Sbjct: 267 LLDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFT----YNSLL 322

Query: 488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG-DEKIVQKLFSMVRQNGV 546
           +   K     +A+++L+EM  +   PD+ T++ L+  +   G  E+    + +M+R+ G+
Sbjct: 323 QVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRK-GI 381

Query: 547 EPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKE 591
            P+A  +  +I AY K             +  S  +P+  T   +   L K+ R +E
Sbjct: 382 MPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEE 438



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 84/464 (18%), Positives = 176/464 (37%), Gaps = 80/464 (17%)

Query: 108 LATVLAKSQRNHELKTLIGDISSSKF-LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR 166
           +  +L +  ++     L+ +IS  ++ L+V   +  ++  YS  G  E  ++ + + R+ 
Sbjct: 180 MVRILGRESQHSVALRLLDEISVEEYSLDVRA-WTTILHAYSRIGKYERAITMFEKMRKT 238

Query: 167 AKLLSTESYNIVMSVYAKTGKNFEAV-ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
               +  +YN+++ VY K G+++  +     ++   G   +  T + +I      G LD 
Sbjct: 239 GLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFTCSTVISACGREGLLDE 298

Query: 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-E 284
           A + F+ L        +  Y  L++ F     + EA S+L EM  +   P       L  
Sbjct: 299 ARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVA 358

Query: 285 RMQEMGFIQGANEFLREMLPDKRIKNVRYYED-----GSDDDEDENDDNNSGVRIAYGVQ 339
                GF +   +F+  M+    + N   Y       G    ED+         +++  Q
Sbjct: 359 AYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDK--------ALSFFRQ 410

Query: 340 LKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPET-AWHFFCWVAY 398
           +K   +   + N    ++  +  L   ++      ++C +  +  +P +  W+       
Sbjct: 411 MK---ESGCVPNVCT-YNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWN------- 459

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
                        ML +    G  + V+R+  +++S G      T   +I  YG      
Sbjct: 460 ------------TMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYG------ 501

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
                       CG  S+  ++ +Y                    EEMI +G  P V T+
Sbjct: 502 -----------RCG--SQIDVVKMY--------------------EEMIKAGFTPCVTTY 528

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           + L+   A +GD +  + +   ++  G +P+   + +++  Y K
Sbjct: 529 NALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAK 572


>gi|15241508|ref|NP_196986.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173968|sp|Q9LEQ7.1|PP382_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g14820, mitochondrial; Flags: Precursor
 gi|9755750|emb|CAC01881.1| putative protein [Arabidopsis thaliana]
 gi|332004697|gb|AED92080.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/312 (20%), Positives = 126/312 (40%), Gaps = 51/312 (16%)

Query: 316 DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEW---SPEVVSLLADAKFVWT 372
           DG D++ +   DN+    ++         + + +   +DE       + ++L + K   +
Sbjct: 100 DGCDEEVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLS 159

Query: 373 TRLVCKVL---RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
             L+ +VL   RH + P  A+ FFCW A + G+ HD      M++ILA+    E +  ++
Sbjct: 160 HDLIVEVLERFRHARKP--AFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVL 217

Query: 430 AKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF------------HDDRTLCGPISKF 477
            ++ + G+ L   T  + +  +  +K+   A+  F                 L   + + 
Sbjct: 218 EEMGTKGL-LTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRA 276

Query: 478 KL------------------MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           KL                  M+ Y+ LL    + +   +A  +  +MI  G+ PD+   +
Sbjct: 277 KLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHN 336

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLS------------NS 567
            ++        +    KLF +++  G  P+   + ++I+ +CK  S            +S
Sbjct: 337 VMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDS 396

Query: 568 NLMPDAATKELL 579
            L PDAA    L
Sbjct: 397 GLQPDAAVYTCL 408



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 2/205 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I   A  +A     A+ I E +K    F     T++ L   L +++   E + L  D   
Sbjct: 233 IAMKAFAAAKERKKAVGIFELMKKY-KFKIGVETINCLLDSLGRAKLGKEAQVLF-DKLK 290

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
            +F    + +  L+  +    +L      WN+           ++N+++    ++ K  +
Sbjct: 291 ERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSD 350

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A++ F  +  +G  PN R+YT+MI        +++A+E F  +    ++  +  Y  L+ 
Sbjct: 351 AIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLIT 410

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP 275
           GF   ++ D    LL EM++ G  P
Sbjct: 411 GFGTQKKLDTVYELLKEMQEKGHPP 435



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 10/122 (8%)

Query: 455 KKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
           KK+DA +K FH  ++  GP    +    Y+ ++R   K      AI   ++M+ SG+ PD
Sbjct: 347 KKSDA-IKLFHVMKSK-GPCPNVRS---YTIMIRDFCKQSSMETAIEYFDDMVDSGLQPD 401

Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAA 574
              ++ L+  F  Q     V +L   +++ G  PD   +  LI    K ++N   MP+  
Sbjct: 402 AAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALI----KLMANQK-MPEHG 456

Query: 575 TK 576
           T+
Sbjct: 457 TR 458


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 77/172 (44%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T + +   L K+ R  + + +  +++        V++  L+  Y  +G L   L+ + E 
Sbjct: 227 TFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEM 286

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
            Q+  +    ++  ++    + G    AV    Q+ + G   N  T+T +I+     G L
Sbjct: 287 AQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFL 346

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           D AL     +   RI+ +   Y +L+ G+  + R DEA+ L++EM   G  P
Sbjct: 347 DDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKP 398



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 22/207 (10%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   +V     ++    R G V+  +RL+  +R  G+R    T   +++  G+ K     
Sbjct: 185 GCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVN--GLCKAGR-- 240

Query: 461 LKAFHDDRTLCGPISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
                D R +   +++  L    + Y++L+    K     +A+ V  EM   G+VPDV T
Sbjct: 241 ---MEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVT 297

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLS 565
           F+ L++     G+ +    L   +R+ G+  + + F  LI  +C            K + 
Sbjct: 298 FTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMR 357

Query: 566 NSNLMPDAATKELLKKSLWKEGRRKEA 592
              + P      +L     K GR  EA
Sbjct: 358 ECRIQPSVVCYNVLINGYCKLGRMDEA 384



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 16/222 (7%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           Q G   DV     ++  + R G++E    L+ ++R  G+R+   T   +ID +  +   D
Sbjct: 288 QKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLD 347

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
            AL A  + R      S    ++ Y+ L+    K  R  +A  ++ EM   G+ PDV T+
Sbjct: 348 DALLAMKEMRECRIQPS----VVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTY 403

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC--KYLSNS--------- 567
           S ++  +   GD     +L   + + GV PDA  +  LI+  C  + L ++         
Sbjct: 404 STILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQ 463

Query: 568 -NLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
             L PD  T   L     KEG  ++A ++ +   K   +P +
Sbjct: 464 LGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDV 505



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 91/212 (42%), Gaps = 6/212 (2%)

Query: 69  PFIVT-----HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT 123
           P +VT     HA+  A N + A++++  ++       N+ T  AL     ++    +   
Sbjct: 293 PDVVTFTSLIHAMCRAGNLERAVALVGQMRER-GLRMNEFTFTALIDGFCRNGFLDDALL 351

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
            + ++   +     V +  L+  Y   G ++      +E   +       +Y+ ++S Y 
Sbjct: 352 AMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYC 411

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           K G    A E  R+++ +G +P++ TY+ +I  L    +L  A E+F  +  + ++    
Sbjct: 412 KIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEF 471

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            Y  L++G        +A SL +EM   G  P
Sbjct: 472 TYTTLIDGHCKEGNVQKALSLHDEMIKKGVLP 503



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 13/126 (10%)

Query: 483 YSSLLRTLTKCKRDFDAINVL-EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
           Y+ L+R L    +  +A+ V+ ++M  +G  P+V T++ L+  F   G+    ++L  ++
Sbjct: 157 YNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVM 216

Query: 542 RQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRR 589
           R+ GV P    F  ++   CK             ++   L PD  +   L     K G  
Sbjct: 217 REGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCL 276

Query: 590 KEAAAV 595
            EA AV
Sbjct: 277 HEALAV 282



 Score = 45.8 bits (107), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 32/168 (19%), Positives = 73/168 (43%)

Query: 108 LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA 167
           L +   K+   HE   +  +++    +   V F +L+     +G+LE  ++   + R+R 
Sbjct: 266 LVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERG 325

Query: 168 KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227
             ++  ++  ++  + + G   +A+   +++ +    P+   Y V+I     LG++D A 
Sbjct: 326 LRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEAR 385

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           E+   +    +K     Y  ++ G+  +   D A  L  +M   G  P
Sbjct: 386 ELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVP 433



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 8/145 (5%)

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL 479
           G ++    LI ++ + GM+    T   I+  Y      D+A   F  +R +   + K  +
Sbjct: 379 GRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSA---FELNRKM---LKKGVV 432

Query: 480 --MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL 537
              + YSSL+R L + +R  DA  + E+M+  G+ PD  T++ L+     +G+ +    L
Sbjct: 433 PDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSL 492

Query: 538 FSMVRQNGVEPDAYMFKVLIQAYCK 562
              + + GV PD   + VLI    K
Sbjct: 493 HDEMIKKGVLPDVVTYSVLIDGLSK 517


>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 603

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 87/205 (42%), Gaps = 1/205 (0%)

Query: 79  APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV 138
           A N + A  +M  L S+  FS N  T +A+   L K  R  E   ++ D   +       
Sbjct: 394 AGNFERAYDLMN-LMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKF 452

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
            +  LM  +    ++   L+ +N+  +        SY  +++V+ +  +  E+   F + 
Sbjct: 453 TYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKESEMFFEEA 512

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
           +  G IP ++TYT MI      G L  A++ F  L        S  Y  ++ G     + 
Sbjct: 513 VRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGAIISGLCKQSKR 572

Query: 259 DEAKSLLNEMRDDGKFPGRAMRVAL 283
           DEA+SL + M + G  P    R+ L
Sbjct: 573 DEARSLYDSMIEKGLVPCEVTRITL 597



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 76/397 (19%), Positives = 163/397 (41%), Gaps = 37/397 (9%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           + E    ++  +++ G+  EAVE   ++ ++G +PN+RT   +I+    +G ++ A  +F
Sbjct: 134 ACEVMRCMVESFSEVGRLKEAVEMVIEMHNQGLVPNTRTLNWIIKVTSEMGLVEYAELLF 193

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA-MRVALERMQEM 289
             + +  ++  S  Y ++V  +  +    EA   L+ M + G     A   + + R    
Sbjct: 194 EEMCVRGVQPDSISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFSGK 253

Query: 290 GFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKAL 349
           G+   A  + R ++      N+  +         E       ++ A+  ++   +  K  
Sbjct: 254 GYTTRALWYFRRLVDMGLEPNLINF-----TCMIEGLCKRGSIKQAF--EMLEEMVGKG- 305

Query: 350 ANTLDEWSPEV---VSLLAD-AKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHD 405
                 W P V    SL+    K  WT              E A+  F  +     +  +
Sbjct: 306 ------WKPNVYTHTSLIDGLCKKGWT--------------EKAFRLFLKLVRSENHKPN 345

Query: 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465
           V     M++   R   +   + L+++++  G+    +T   +ID +  +   + A    +
Sbjct: 346 VLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERA----Y 401

Query: 466 DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF 525
           D   L         +  Y++++  L K  R  +A  +LE+   +G+ PD  T++ LM   
Sbjct: 402 DLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEH 461

Query: 526 ALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
             Q + +    LF+ + + G++PD + +  LI  +C+
Sbjct: 462 CKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCR 498



 Score = 42.4 bits (98), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 18/80 (22%), Positives = 40/80 (50%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++L+    +  R  ++    EE +  GI+P  +T++ ++  +  +G+  +  K F  + 
Sbjct: 489 YTTLIAVFCRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLS 548

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
            +G  PD+  +  +I   CK
Sbjct: 549 DHGCAPDSITYGAIISGLCK 568



 Score = 40.4 bits (93), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 27/147 (18%), Positives = 59/147 (40%), Gaps = 36/147 (24%)

Query: 165 QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
           +R  ++   ++ +++S ++  G    A+  FR+++D G  PN   +T MIE L   G + 
Sbjct: 233 ERGFVVDNATFTLIISRFSGKGYTTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIK 292

Query: 225 SALEVFSALP------------------------------LMRIKRTSKQ------YLIL 248
            A E+   +                                +++ R+         Y  +
Sbjct: 293 QAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAM 352

Query: 249 VEGFVGVERFDEAKSLLNEMRDDGKFP 275
           + G+   ++ + A+ LL+ M++ G  P
Sbjct: 353 ISGYCREDKLNRAEMLLSRMKEQGLVP 379


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 89/197 (45%), Gaps = 1/197 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A  +   ++SN  +  N+ T   L     KS+R  +   +  ++S    +  ++ +  
Sbjct: 309 DEARQMFYLMESN-GYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTV 367

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+Q Y   G  ++    +N+   R       +YN+++      G   +A+  F+ +    
Sbjct: 368 LIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKRE 427

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
              N  TYT++I+ +  +GK++ A ++F +L    +K     Y  ++ GF       EA 
Sbjct: 428 MDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEAD 487

Query: 263 SLLNEMRDDGKFPGRAM 279
           +L  +M++DG  P  ++
Sbjct: 488 ALFKKMKEDGFLPNESV 504



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 87/208 (41%), Gaps = 1/208 (0%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T  AL   L    R  E + +   + S+ +    V +  L+  +  S  +E     + E 
Sbjct: 294 TYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEM 353

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
            Q+  + +T +Y +++  Y   G+   A E F Q+    A P+ RTY V+++ L   G +
Sbjct: 354 SQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYV 413

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVA 282
           + AL +F  +    +      Y I+++G   V + ++A  L   +   G  P        
Sbjct: 414 EKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTM 473

Query: 283 LERMQEMGFIQGANEFLREMLPDKRIKN 310
           +      GFI  A+   ++M  D  + N
Sbjct: 474 ISGFCRRGFIHEADALFKKMKEDGFLPN 501



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 80/379 (21%), Positives = 132/379 (34%), Gaps = 34/379 (8%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           A   L  M  L   P+     S LH          R  +   L   I    F    V + 
Sbjct: 136 ASCFLGKMMKLGFEPDLVTFTSLLHGFC----HWNRIEDALALFDQIVGMGFRPNVVTYT 191

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            L+     +  L   +  +N+        +  +YN ++S   + G+  +A    R ++  
Sbjct: 192 TLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKR 251

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G  PN  T+T +I+  V +GK+  A E++  +  M +      Y  L+ G     R DEA
Sbjct: 252 GIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEA 311

Query: 262 KSLLNEMRDDGKFPGRAMRVALERMQEMGF-----IQGANEFLREMLPDKRIKNVRYYE- 315
           + +   M  +G +P       L      GF     ++   +   EM     + N   Y  
Sbjct: 312 RQMFYLMESNGYYPNEVTYTTLIH----GFCKSKRVEDGTKIFYEMSQKGLVANTITYTV 367

Query: 316 -------DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLL---- 364
                   G  D   E  +     R    ++    L      N   E +  +   +    
Sbjct: 368 LIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKRE 427

Query: 365 ADAKFVWTTRLV---CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGH 421
            D   V  T ++   CKV       E A+  FC + +  G   +V     M++   R G 
Sbjct: 428 MDINIVTYTIIIQGMCKV----GKVEDAFDLFCSL-FSKGMKPNVITYTTMISGFCRRGF 482

Query: 422 VELVDRLIAKLRSDGMRLP 440
           +   D L  K++ DG  LP
Sbjct: 483 IHEADALFKKMKEDGF-LP 500



 Score = 47.0 bits (110), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 12/125 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+SL+  L +  R  DA  +L +M+  GI P+V TF+ L+  F   G     ++L+ ++ 
Sbjct: 225 YNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMI 284

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
           Q  V PD + +  LI   C Y            + ++   P+  T   L     K  R +
Sbjct: 285 QMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVE 344

Query: 591 EAAAV 595
           +   +
Sbjct: 345 DGTKI 349



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++L+    K KR  D   +  EM   G+V +  T++ L+  + L G   + Q++F+ + 
Sbjct: 330 YTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMG 389

Query: 543 QNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRK 590
                PD   + VL+   C            KY+    +  +  T  ++ + + K G+ +
Sbjct: 390 SRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVE 449

Query: 591 EA 592
           +A
Sbjct: 450 DA 451



 Score = 40.4 bits (93), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/83 (22%), Positives = 41/83 (49%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ +++L+    K  +  +A  + + MI   + PDV T++ L+      G     +++F 
Sbjct: 257 VITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFY 316

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK 562
           ++  NG  P+   +  LI  +CK
Sbjct: 317 LMESNGYYPNEVTYTTLIHGFCK 339


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 90/423 (21%), Positives = 176/423 (41%), Gaps = 37/423 (8%)

Query: 162 EYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG 221
           E R+R   L+T +YN++++   ++G   EA    + + D G +P+  TY  +I  L    
Sbjct: 247 EMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSR 306

Query: 222 KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRV 281
           + + A  +   +    +K     Y  L++GF+     DEA  ++ EM   G  P +    
Sbjct: 307 RSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYD 366

Query: 282 ALER-MQEMGFIQGANEFLREMLPDKRIKNVRYYE---DGSDDDEDENDD-------NNS 330
            L R + +MG +  A+  L++M+ D    +   Y    +G      + D         N+
Sbjct: 367 NLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENA 426

Query: 331 GVR---IAYGVQLKPWL---DPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFK 384
           G+      Y + +       +P+  ++ L+E + +    L    FV+   L+    R   
Sbjct: 427 GISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKG---LKPNAFVYAP-LISGYCR--- 479

Query: 385 SPETAWHFFCWV---AYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP- 440
             E      C +     +     D+Y    ++  L++ G VE   +  A+++  G+ LP 
Sbjct: 480 --EGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGL-LPN 536

Query: 441 -FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDA 499
            F+   LI   +G  K  D         R L   +      ++Y  LL +  K       
Sbjct: 537 EFTYSGLI---HGYLKNGDLESAEQLVQRMLDTGLKPND--VIYIDLLESYFKSDDIEKV 591

Query: 500 INVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
            +  + M+  G++ D + +  L+++ +  G+ +   ++ S + +NG  PD +++  LI  
Sbjct: 592 SSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISG 651

Query: 560 YCK 562
            CK
Sbjct: 652 LCK 654



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/230 (20%), Positives = 96/230 (41%), Gaps = 5/230 (2%)

Query: 86  LSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQ 145
           LS ME    +PN       +H L     +S    +   L+ ++++      +  +  L+ 
Sbjct: 420 LSEMENAGISPNVYTYSIMIHGLC----QSGEPEKASDLLEEMTTKGLKPNAFVYAPLIS 475

Query: 146 WYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP 205
            Y   G++ L    +++  +   L     YN ++   +K G+  E+ + F Q+ + G +P
Sbjct: 476 GYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLP 535

Query: 206 NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL 265
           N  TY+ +I   +  G L+SA ++   +    +K     Y+ L+E +   +  ++  S  
Sbjct: 536 NEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTF 595

Query: 266 NEMRDDG-KFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
             M D G     R   + +  +   G ++ A   L  +  +  + +V  Y
Sbjct: 596 KSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVY 645



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 16/117 (13%)

Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           DA  +L EM  +GI P+V T+S +++     G+ +    L   +   G++P+A+++  LI
Sbjct: 415 DAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLI 474

Query: 558 QAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA----AAVEER 598
             YC+             ++  N++PD      L   L K GR +E+    A ++ER
Sbjct: 475 SGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQER 531



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 21/144 (14%)

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
           +YSSL+  L K      A  +L+EM   G+ P++  ++ L+      GD    + +F+ +
Sbjct: 644 VYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSI 703

Query: 542 RQNGVEPDAYMFKVLIQAYCK--------YLSN----SNLMPDAATKELLKKSLWKEGRR 589
              G+ P+   +  LI   CK        YL N    + + PDA    +L       G  
Sbjct: 704 LAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDL 763

Query: 590 KEAAAVEERCEKINDVPSLALRGH 613
           ++A  + E          + LRGH
Sbjct: 764 EQAMFLIEE---------MFLRGH 778



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/129 (20%), Positives = 56/129 (43%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           + +L+     + D E      +E  ++    +   YN ++    K+G    A   F  ++
Sbjct: 645 YSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSIL 704

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
            +G +PN  TYT +I+    +G + +A  +++ +    I   +  Y +L  G       +
Sbjct: 705 AKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLE 764

Query: 260 EAKSLLNEM 268
           +A  L+ EM
Sbjct: 765 QAMFLIEEM 773



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 121/310 (39%), Gaps = 65/310 (20%)

Query: 342 PWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPET-----------AW 390
           P L P A A   D ++   +SL A + F     L+ K++R + SP             + 
Sbjct: 113 PQLAPSAPAP--DAFAHLAMSLCAGSLFNLANGLLIKMIRAYPSPPVVLASIHRALSDSG 170

Query: 391 HFFCWVAYQP-GYTHDVY----------------------ALEKMLTILA---RHGHV-- 422
           H F   A +P GY  +V+                       L++ +   A   RHG    
Sbjct: 171 HPFAGGARRPRGYLQEVWEGAGRRGGRPDDERSGHGSQHSVLQRAVEGSAARGRHGSALE 230

Query: 423 --------ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI 474
                   +   +++ ++R  G  L   T  ++I     S   + A   F  D    G +
Sbjct: 231 AYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAF-GFKKDMEDYGLV 289

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
                   Y +L+  L K +R  +A  +L+EM  + + P+V  ++ L+  F  +G+    
Sbjct: 290 PD---GFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEA 346

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCKY--LSNSNLM----------PDAATKELLKKS 582
            K+   +   GV+P+   +  L++  CK   +  ++L+          PD  T  L+ + 
Sbjct: 347 FKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEG 406

Query: 583 LWKEGRRKEA 592
            ++   +K+A
Sbjct: 407 HFRHHSKKDA 416



 Score = 42.7 bits (99), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 37/180 (20%), Positives = 72/180 (40%), Gaps = 6/180 (3%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +++L++ Y  S D+E V ST+     +  +L    Y I++   + +G    A      
Sbjct: 573 VIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSG 632

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G++P+   Y+ +I  L      + A  +   +    +      Y  L++G      
Sbjct: 633 IEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGD 692

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREML-----PDKRIKNV 311
              A+++ N +   G  P      +L +   ++G I  A     EML     PD  + +V
Sbjct: 693 ISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSV 752


>gi|357449261|ref|XP_003594907.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483955|gb|AES65158.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1385

 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 111/573 (19%), Positives = 205/573 (35%), Gaps = 99/573 (17%)

Query: 99  SHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLS 158
           S N +T + L   L +  +      L+  +  +     +V +  L+ WY   G  +    
Sbjct: 176 SPNVATFNILLNALCERGKFKSAGVLLRKMDETGHFPTAVTYNTLLNWYCKKGRYKAASE 235

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
             +    +       +YN+++    +  ++ +     R++      PN  TY  +I  LV
Sbjct: 236 LIDAMASKGIAADVCTYNVLIDDLCRKSRSAKGYLILRRMRKNMVYPNEITYNTLINGLV 295

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR- 277
             GK+  A +VF  + L  +   S  Y  L+ G       +EA  L + M   G  P   
Sbjct: 296 KEGKIGVATKVFEEMSLCNLLPNSVTYNTLIFGHCSNGNIEEALRLCDVMVSHGLRPNEV 355

Query: 278 ---AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE--DGSDDDEDENDDNNSGV 332
              A+   + +  + G +    E +R  +   R+ ++ Y    DG   +         G+
Sbjct: 356 TYGALLNGISKHAQFGLVSSVLERMR--MDGVRVGHISYTTMIDGLCKN---------GL 404

Query: 333 RIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHF 392
            +   VQL   LD     +     SP++V+          T LV   + H     T  + 
Sbjct: 405 -LEEAVQL---LDDMLKVSV----SPDIVTFSVLVNGFLKTGLVPNRVLH----STLIYN 452

Query: 393 FC------------WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP 440
           +C             V  Q G+  D +    ++    R G +E  +  +  +   G+   
Sbjct: 453 YCKMGNLKEALNAYAVMNQSGHVSDHFTSSVLVASFCRCGRLEEAEYFVDHMSRMGLAPS 512

Query: 441 FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKF------------------KLML- 481
             T   IID YG S  A  A   F    +L    S+F                  K+ + 
Sbjct: 513 SVTFDCIIDTYGNSGDALKAFSVFDKMNSLGHLPSQFTYEGLLKGLLIGGHINEAKIFMH 572

Query: 482 ------------LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
                        Y+++L   ++     +A+ +L+EM+ +  VPD  T++ L+     +G
Sbjct: 573 RPSSIPYAIGSTFYNTMLTLTSRSGNLSNAVALLDEMVMNNFVPDSFTYTSLIAGLCRKG 632

Query: 530 DEKIVQKLF---SMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAA 574
             K+V  L      + +  + P+  M+  L+    K             + N  + PDA 
Sbjct: 633 --KMVPALLLSGRAIEKGLLSPNPAMYTSLVDGLLKEGHSKAALYMFEDMLNEGVQPDAI 690

Query: 575 TKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
              +L     ++G+            K+ND+ S
Sbjct: 691 AFNVLLDRYSRKGKM----------SKVNDILS 713



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 82/425 (19%), Positives = 161/425 (37%), Gaps = 68/425 (16%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS-AL 233
           YN ++++ +++G    AV    +++    +P+S TYT +I  L   GK+  AL +   A+
Sbjct: 586 YNTMLTLTSRSGNLSNAVALLDEMVMNNFVPDSFTYTSLIAGLCRKGKMVPALLLSGRAI 645

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFI 292
               +      Y  LV+G +       A  +  +M ++G  P   A  V L+R    G +
Sbjct: 646 EKGLLSPNPAMYTSLVDGLLKEGHSKAALYMFEDMLNEGVQPDAIAFNVLLDRYSRKGKM 705

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
              N+ L  M       N+                        Y + L  +     +A  
Sbjct: 706 SKVNDILSTMRSRSLCFNLA----------------------TYNILLHGYSKRHGMARC 743

Query: 353 LDEWSPEVVSLLADAKFVWTTRLV--CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
              ++  ++   A  +  W + ++  CK      S + A  F   +  + G+  D + L 
Sbjct: 744 SKLYNEMIIHGFAPDRLTWHSLILGYCKS----GSLDVAVKFLRKITVE-GFKVDCFTLN 798

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH----- 465
            +++ L     +++   L+ +L   G+     T   + + +  +   D A    H     
Sbjct: 799 VLVSKLCERNEIKMAFDLVKQLNMLGVTPNVDTYNSLFNGFVRTCSFDEARCILHALLEN 858

Query: 466 -----------------------------DDRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
                                        D+  + G  S+   M   S+++R L + ++ 
Sbjct: 859 GYAPTCKQFTTLIRGMCRMGNVKGAMELQDEMKILGVSSQGVAM---SAIIRGLARSRKT 915

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
            +A  +L  M+   I+P V TF+ LM+ +  +G+     +L S++ Q  V+ D   + VL
Sbjct: 916 DEATRILGIMLEMQIIPTVATFTTLMHTYCKEGNVAKALELRSVMEQCHVKLDVAAYNVL 975

Query: 557 IQAYC 561
           I   C
Sbjct: 976 ISGLC 980



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 30/150 (20%), Positives = 62/150 (41%), Gaps = 10/150 (6%)

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY---GISKKADAALKAFHDDRTLCG 472
           L + GH +    +   + ++G++       +++D Y   G   K +  L      R+LC 
Sbjct: 664 LLKEGHSKAALYMFEDMLNEGVQPDAIAFNVLLDRYSRKGKMSKVNDILSTMRS-RSLCF 722

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
            ++ + ++L   S    + +C + ++      EMI  G  PD  T+  L+  +   G   
Sbjct: 723 NLATYNILLHGYSKRHGMARCSKLYN------EMIIHGFAPDRLTWHSLILGYCKSGSLD 776

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           +  K    +   G + D +   VL+   C+
Sbjct: 777 VAVKFLRKITVEGFKVDCFTLNVLVSKLCE 806



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 42/212 (19%), Positives = 75/212 (35%), Gaps = 28/212 (13%)

Query: 76   LRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLN 135
            L   PN D+  S+        +F   +  LHAL                      + +  
Sbjct: 823  LGVTPNVDTYNSLFNGFVRTCSFDEARCILHALL--------------------ENGYAP 862

Query: 136  VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV----YAKTGKNFEA 191
                F  L++     G+++  +    E +   K+L   S  + MS      A++ K  EA
Sbjct: 863  TCKQFTTLIRGMCRMGNVKGAM----ELQDEMKILGVSSQGVAMSAIIRGLARSRKTDEA 918

Query: 192  VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
                  +++   IP   T+T ++      G +  ALE+ S +    +K     Y +L+ G
Sbjct: 919  TRILGIMLEMQIIPTVATFTTLMHTYCKEGNVAKALELRSVMEQCHVKLDVAAYNVLISG 978

Query: 252  FVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
                     A  L  EM     +P  ++ + L
Sbjct: 979  LCADGDIQAAFKLYEEMEQRDIWPNTSIYIVL 1010


>gi|294461967|gb|ADE76539.1| unknown [Picea sitchensis]
          Length = 486

 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 95/213 (44%)

Query: 63  NDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELK 122
           + R+L P  V   + S  +A  A+ I E     P F H+ ST H L   L ++++   ++
Sbjct: 94  HSRMLTPARVHKLIASQTDALLAMEIFEVASRQPGFKHSYSTYHTLICKLGRARQFKTME 153

Query: 123 TLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVY 182
            LI  +           F+++++ Y   G     +  +++  +       + +N+++ V 
Sbjct: 154 GLIQQMRKDGCPYTPGLFVDIIEIYGEVGMPNEAIKAFHQMLEFGYEPLAKHFNVLLIVL 213

Query: 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
            +      A+  F+++ + G  PN+RTY ++I    +  KL  A  +F+ +         
Sbjct: 214 IEHKCLETALSLFKKLHEFGISPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDV 273

Query: 243 KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           + Y IL++G     +   A  +L+EM + G  P
Sbjct: 274 ETYSILMQGLCRKSQVKTALGVLDEMLNKGYVP 306



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 92/217 (42%), Gaps = 18/217 (8%)

Query: 389 AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII 448
           A   F   + QPG+ H       ++  L R    + ++ LI ++R DG          II
Sbjct: 116 AMEIFEVASRQPGFKHSYSTYHTLICKLGRARQFKTMEGLIQQMRKDGCPYTPGLFVDII 175

Query: 449 DFYGISKKADAALKAFHDDRTLC-GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMI 507
           + YG     + A+KAFH        P++K      ++ LL  L + K    A+++ +++ 
Sbjct: 176 EIYGEVGMPNEAIKAFHQMLEFGYEPLAKH-----FNVLLIVLIEHKCLETALSLFKKLH 230

Query: 508 FSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY---- 563
             GI P+ +T++ L+              LF+ + + G  PD   + +L+Q  C+     
Sbjct: 231 EFGISPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVK 290

Query: 564 --------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                   + N   +PDA T   L  SL ++   +EA
Sbjct: 291 TALGVLDEMLNKGYVPDALTYNTLLNSLCRKMNLREA 327



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 89/217 (41%), Gaps = 22/217 (10%)

Query: 389 AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII 448
           A+H      Y+P   H       +L +L  H  +E    L  KL   G+     T  ++I
Sbjct: 190 AFHQMLEFGYEPLAKH----FNVLLIVLIEHKCLETALSLFKKLHEFGISPNTRTYNILI 245

Query: 449 DFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMI 507
             +  S K   A   F+   +  C P  +      YS L++ L +  +   A+ VL+EM+
Sbjct: 246 RAHCHSDKLSHAYFLFNKMHKQGCIPDVE-----TYSILMQGLCRKSQVKTALGVLDEML 300

Query: 508 FSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY---- 563
             G VPD  T++ L+     + + +   +L S ++  G  PD   +  +I  +C+     
Sbjct: 301 NKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRAL 360

Query: 564 --------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                   +  +  +P+A +   L   L  EG+  EA
Sbjct: 361 DACQILRDMPENGCLPNALSYRTLVNGLCNEGKFDEA 397



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/174 (20%), Positives = 78/174 (44%), Gaps = 1/174 (0%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L++ +  S  L      +N+  ++  +   E+Y+I+M    +  +   A+    +++++G
Sbjct: 244 LIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKG 303

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +P++ TY  ++  L     L  A  + S + +M        Y  ++ GF    R  +A 
Sbjct: 304 YVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDAC 363

Query: 263 SLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
            +L +M ++G  P   + R  +  +   G    A +F+ EM+ +  I ++  Y 
Sbjct: 364 QILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDFVEEMISNGFIPHISIYH 417


>gi|297843350|ref|XP_002889556.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335398|gb|EFH65815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 503

 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 107/511 (20%), Positives = 212/511 (41%), Gaps = 46/511 (9%)

Query: 65  RLLDPFIVTHALRSAPNADSALSIMEALKSN-PNFSHNQSTLHALATVLAKSQRNHELKT 123
           R+L P +++  L+   N  +AL + E  K   P++ HN +    +  +L  S R  E+K 
Sbjct: 7   RVLTPSLLSQILKKQKNPVTALKLFEEAKVRFPSYGHNGTVYATMIDILGNSNRVLEMKY 66

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           +I  +           F + ++ +S +G L+  +S +    +   +  T S++ ++    
Sbjct: 67  VIERMKGDSCECKDSVFASAIRTFSRAGRLDDAISLFKSLHEFNCVNWTLSFDTLLQEMV 126

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSR--TYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
           K  +   A   FR+    G   NSR     ++++ L  + + D A +VF  +        
Sbjct: 127 KESELEAACHIFRKYC-YGWEVNSRITALNLLMKVLCQVNRSDLASQVFQEMNYQGCYPD 185

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEM--RDDGKFPGRAM---RVALERMQEMGFIQGAN 296
              + IL++GF    + DEA  LL  M  R   K  G  +   ++ L+ + + G +  A 
Sbjct: 186 RDSFRILMKGFCLEGKLDEATHLLYSMFWRISQKGSGEDIVVYKILLDALCDAGEVDQAI 245

Query: 297 EFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEW 356
           E L ++L        R Y      +    + N+ G++    +  +  +  +    +LD +
Sbjct: 246 EILGKILRKGLKAPKRCYH---QIEAGHWESNSEGIKRVKRLLTETLI--RGAIPSLDSY 300

Query: 357 SPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTIL 416
           S     L  + K V    ++  + R                ++P  T  +Y  +  +  L
Sbjct: 301 SAMATDLFEEGKLVEGEEVLLAMRRK--------------GFEP--TPFIYGAK--VKAL 342

Query: 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK 476
            + G +E    +I K   +G  LP   +  ++   G+  +   +++A    + +   +S 
Sbjct: 343 CKAGKLEEAVSVINKEMMEGHCLPTVGVYNVL-IKGLCDEGK-SMEAVGYLKKMSKQVSC 400

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG----DEK 532
                 Y +L+  L +  +  +A  V+EEM+     P V+T     YH  ++G    D +
Sbjct: 401 VANEETYQTLMDGLCRDSQFLEASQVMEEMLIKSHFPGVET-----YHVMIKGLCDMDRR 455

Query: 533 --IVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
              V  L  MV Q+ V P++ ++K L ++ C
Sbjct: 456 YEAVMWLEEMVSQDMV-PESSVWKALAESVC 485


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 107/490 (21%), Positives = 186/490 (37%), Gaps = 64/490 (13%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAI-------PNSRTYTVMIEHLVNLGKLDSA 226
           +Y  +M    +TGK   A+   ++++++ +        P+  T +++I+ L   GK+  A
Sbjct: 307 AYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEA 366

Query: 227 LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER- 285
            E+   +           Y  L++G     R  EA  L   M+  G  P       L + 
Sbjct: 367 NELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKG 426

Query: 286 MQEMGFIQGANEFLREMLPDKRIKNVRYYE---------DGSDDDEDEND---------- 326
           + + G I  A +  +EML D     ++            DG   D  E++          
Sbjct: 427 LCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFEEMKA 486

Query: 327 -----DNNSGVRIAYGVQLK-PWLDPKALANTLDEWS--PEVV--SLLADAKFVWTTRLV 376
                D  S   + +G  L   W   K L N + +    P+V   S+L D        ++
Sbjct: 487 QGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLID--------ML 538

Query: 377 CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
           CK     K      +    V  Q G   DV     ++  L     +    +L  K++  G
Sbjct: 539 CK-----KGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLG 593

Query: 437 MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGP--ISKFKLMLLYSSLLRTLTKCK 494
                 T   ++     S     AL+   +  +   P  I+     + YS ++  L KC 
Sbjct: 594 CMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCG 653

Query: 495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK 554
           R+ +A  + +EM   G++PDV +++ L++ F   G  K  + LF+ +   GV+PD   F 
Sbjct: 654 REDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFS 713

Query: 555 VLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKI 602
           VLI   CK             +     +P+  T   L K L    R  EA  +  + +K+
Sbjct: 714 VLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKL 773

Query: 603 NDVPSLALRG 612
             +P +   G
Sbjct: 774 GCLPDVVTYG 783



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 100/464 (21%), Positives = 177/464 (38%), Gaps = 64/464 (13%)

Query: 165 QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
           QR  +L   +Y+ ++       +  EA   F  +   G  P++ TY  +++ L   G ++
Sbjct: 375 QRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNIN 434

Query: 225 SALEVFSALP------LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA 278
            AL++   +        ++ K T   Y I+++G     R DEA+ L  EM+  G  P   
Sbjct: 435 IALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVI 494

Query: 279 MRVALERMQEMGFI-----QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVR 333
               L      GF      + A     EML                D   + D   S V 
Sbjct: 495 SYTTLIH----GFCLSGKWEKAKCLFNEML----------------DVGIQPDVTTSSVL 534

Query: 334 IAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFF 393
           I    +    ++    AN L E   +   +L         + +C  ++H  S  T     
Sbjct: 535 IDMLCKKGKVIE----ANKLLEVVIQRGCILDVVTCTTLVKGLC--MKHRISKATQL--- 585

Query: 394 CWVAYQP-GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD----GMRLPFSTIR--L 446
            ++  Q  G   +V     ++  L + G++++   L   + SD    G+    + I   +
Sbjct: 586 -FLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSI 644

Query: 447 IIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
           IID      + D A + F + + L G I     ++ Y+SL+    +  +  DA  +  EM
Sbjct: 645 IIDGLCKCGREDEARELFKEMKAL-GVIPD---VISYTSLIHGFCRSGKWKDAKYLFNEM 700

Query: 507 IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC----- 561
           +  G+ PDV TFS L+     +G      +L  ++ Q G  P+   +  L++  C     
Sbjct: 701 VDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRI 760

Query: 562 -------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
                    +     +PD  T   L K L + G  K A  + ++
Sbjct: 761 SEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKK 804



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 93/466 (19%), Positives = 181/466 (38%), Gaps = 46/466 (9%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L K +R  E + L  ++ +   +   +++  L+  +  SG  E     +NE         
Sbjct: 468 LCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPD 527

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
             + ++++ +  K GK  EA +    VI  G I +  T T +++ L    ++  A ++F 
Sbjct: 528 VTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFL 587

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR-------VALE 284
            +  +           L++G         A  L   M  D    G   +       + ++
Sbjct: 588 KMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIID 647

Query: 285 RMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYG-VQLKPW 343
            + + G    A E  +EM     I +V  Y                   + +G  +   W
Sbjct: 648 GLCKCGREDEARELFKEMKALGVIPDVISY-----------------TSLIHGFCRSGKW 690

Query: 344 LDPKALANTLDEWS--PEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPG 401
            D K L N + +    P+V +      F     ++CK  +  ++ E        V  Q G
Sbjct: 691 KDAKYLFNEMVDIGVQPDVTT------FSVLIDMLCKEGKVIEANE-----LLEVMIQRG 739

Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP----FSTIRLIIDFYGISKKA 457
              +      ++  L  +  +    +L  K++  G  LP    + T+   +   G  K A
Sbjct: 740 CIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGC-LPDVVTYGTLMKGLCQTGNIKTA 798

Query: 458 DAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
               K    D    G  + FK  ++ YS ++  L K  R+ +A  + +EM   G++P+V 
Sbjct: 799 LELHKKMLSDTGQYG--TNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVI 856

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           +++ L++ F   G  +  + LF+ +   GV+ +A  + V+I  +CK
Sbjct: 857 SYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCK 902



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 8/168 (4%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD----LEL- 155
           N  T   L   L  + R  E   L   +     L   V +  LM+    +G+    LEL 
Sbjct: 743 NTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELH 802

Query: 156 --VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
             +LS   +Y    K     SY+I++    K G+  EA E F+++   G IPN  +YT +
Sbjct: 803 KKMLSDTGQYGTNFKP-DVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSL 861

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           I      GKL+ A  +F+ +    ++  +  Y +++ GF    + D+A
Sbjct: 862 IHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA 909



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/263 (20%), Positives = 104/263 (39%), Gaps = 17/263 (6%)

Query: 69  PFIVTHA-----LRSAPNADSALSIMEALKSNP-----NFSHNQSTLHALATVLAKSQRN 118
           P +VT A     L  + N   AL + + + S+      N   N  +   +   L K  R 
Sbjct: 596 PNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGRE 655

Query: 119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV 178
            E + L  ++ +   +   +++ +L+  +  SG  +     +NE           +++++
Sbjct: 656 DEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVL 715

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI 238
           + +  K GK  EA E    +I  G IPN+ TYT +++ L    ++  A ++F  +  +  
Sbjct: 716 IDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGC 775

Query: 239 KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR-------VALERMQEMGF 291
                 Y  L++G         A  L  +M  D    G   +       + ++ + + G 
Sbjct: 776 LPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGR 835

Query: 292 IQGANEFLREMLPDKRIKNVRYY 314
              A E  +EM     I NV  Y
Sbjct: 836 EDEARELFKEMKALGVIPNVISY 858



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 96/450 (21%), Positives = 176/450 (39%), Gaps = 49/450 (10%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVI-DEG-----AIPNSRTYTVMIEHLVNLGKLDSAL 227
           +Y  +M    +TG    A++  ++++ D G       P   +Y+++I+ L    + D A 
Sbjct: 126 TYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEAR 185

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR-VALERM 286
           E+F  +    +      Y  L+ GF    ++++AK L NEM D G  P      V ++  
Sbjct: 186 ELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMF 245

Query: 287 QEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDP 346
            + G +  ANE L  M+    I ++  Y         ++       RI+   QL  ++  
Sbjct: 246 CKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKH-------RISEATQL--FMSM 296

Query: 347 KALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDV 406
           K L        P+ ++     K +  T  +   L   +        +     +P    DV
Sbjct: 297 KKLG-----CRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRP----DV 347

Query: 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD 466
                ++ IL + G V   + L+  +   G  L   T   +I    +  +   A   F  
Sbjct: 348 TTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMS 407

Query: 467 DRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS----GI--VPDVQTFS 519
            + L C P +     + Y +L++ L +      A+ + +EM+      GI   P + ++S
Sbjct: 408 MQKLGCRPDA-----ITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYS 462

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC--------KYLSNS---- 567
            ++        E   ++LF  ++  G+ PD   +  LI  +C        K L N     
Sbjct: 463 IIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDV 522

Query: 568 NLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
            + PD  T  +L   L K+G+  EA  + E
Sbjct: 523 GIQPDVTTSSVLIDMLCKKGKVIEANKLLE 552



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 77/176 (43%), Gaps = 6/176 (3%)

Query: 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
           +T   L  +L K  +  E   L+  +     +  +V +  L++    +  +      + +
Sbjct: 710 TTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMK 769

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI-DEGAI-----PNSRTYTVMIEH 216
            ++   L    +Y  +M    +TG    A+E  ++++ D G       P+  +Y+++I+ 
Sbjct: 770 MQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDG 829

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           L   G+ D A E+F  +  + +      Y  L+ GF    + ++AK L NEM D G
Sbjct: 830 LCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQG 885



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 18/144 (12%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           +S L+  L K  +  +A  +LE MI  G +P+  T++ L+    +        +LF  ++
Sbjct: 712 FSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQ 771

Query: 543 QNGVEPDAYMFKVLIQAYC-------------KYLSNS-----NLMPDAATKELLKKSLW 584
           + G  PD   +  L++  C             K LS++     N  PD  +  ++   L 
Sbjct: 772 KLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLC 831

Query: 585 KEGRRKEAAAVEERCEKINDVPSL 608
           K GR  EA  + +  + +  +P++
Sbjct: 832 KHGREDEARELFKEMKALGVIPNV 855


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 84/429 (19%), Positives = 171/429 (39%), Gaps = 39/429 (9%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V++ +L+  Y   G L      ++E   +    +T ++  ++S   +  +  +A   F +
Sbjct: 472 VSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDE 531

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++++  +PN  TY VMIE     G    A E+ + +    +   +  Y  L+       R
Sbjct: 532 MLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGR 591

Query: 258 FDEAKSLLNEM-RDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE- 315
             EAK  ++++ R+  K         L    + G ++ A    REM+      ++  Y  
Sbjct: 592 VCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAV 651

Query: 316 --DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTT 373
             DG+  ++D +          +G+          L N  D+        L   K ++T+
Sbjct: 652 LIDGTIKEQDTS--------AVFGL----------LKNMHDQR-------LRPDKVIYTS 686

Query: 374 RLVCKVLRHFKSPETAWHFFCW-VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKL 432
                +  + K+      F  W +    G T ++     ++  L + G ++  + L  ++
Sbjct: 687 M----IDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEM 742

Query: 433 RSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK 492
                     T    +D        + A++  H+D  L G ++     + Y+ L+R   K
Sbjct: 743 LVSNSTPNHVTYCCFLDHLAREGSMEKAVQ-LHND-MLKGLLAN---TVSYNILVRGFCK 797

Query: 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYM 552
             R  +A  +L+EMI + I PD  T+S ++Y    +G+     + +  +   G++PD   
Sbjct: 798 LGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLA 857

Query: 553 FKVLIQAYC 561
           +  LI   C
Sbjct: 858 YNFLIYGCC 866



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 91/207 (43%), Gaps = 7/207 (3%)

Query: 114 KSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE 173
           K Q    +  L+ ++   +     V + +++  YS +G ++     W+         +  
Sbjct: 658 KEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIV 717

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y  +++   K G   +A   +++++   + PN  TY   ++HL   G ++ A+++ + +
Sbjct: 718 TYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDM 777

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
            L  +   +  Y ILV GF  + R +EA  LL+EM D+  FP        + +    G +
Sbjct: 778 -LKGLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNL 836

Query: 293 QGANEFLREML-----PDKRIKNVRYY 314
            GA EF   ML     PD    N   Y
Sbjct: 837 DGAIEFWDTMLNKGLKPDTLAYNFLIY 863



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 83/205 (40%), Gaps = 1/205 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           ++ H L        A+ I   L      + ++ T   L   L K Q       ++ ++  
Sbjct: 266 VLIHGLCKNKRVWEAVEIKNGLIQK-GLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIE 324

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
             F+       +L++     G +       N  ++   + S   YN +++   K GK  E
Sbjct: 325 LGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDE 384

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A   F+++ ++G   N  TY+++I+     GKLD+A+     + +  IK T   Y  L+ 
Sbjct: 385 AELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLIN 444

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP 275
           G   +     A S  +EM D G  P
Sbjct: 445 GHCKLGNLSAAVSFFDEMIDKGLKP 469



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 82/210 (39%), Gaps = 1/210 (0%)

Query: 106 HALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQ 165
           +AL   L K  +  E + L  ++         V +  L+  +   G L+  +    +   
Sbjct: 370 NALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIM 429

Query: 166 RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
               ++   YN +++ + K G    AV  F ++ID+G  P   +YT +I    N GKL  
Sbjct: 430 AGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHE 489

Query: 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALE 284
           A  ++  +    I   +  +  L+       R  +A  L +EM +    P      V +E
Sbjct: 490 AFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIE 549

Query: 285 RMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
              + G    A E L +M+    + +   Y
Sbjct: 550 GHCKEGNTVKAFELLNQMVQKGLVPDTYTY 579



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 84/452 (18%), Positives = 172/452 (38%), Gaps = 66/452 (14%)

Query: 165 QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
           ++   +S+  +++++  Y +  + F++V  FR +     +P  RT   ++  L  + ++D
Sbjct: 151 EKCDFISSLGFDLLIQSYVQEKRMFDSVLIFRLMRQCELMPQVRTLGEVLNGLAKIRRVD 210

Query: 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALE 284
             L +F  +  M I+     Y+ ++  F  ++ F +AK ++                  +
Sbjct: 211 MVLVLFGEILSMGIRPDIYIYVAVIRSFCELKNFAKAKEMI------------------Q 252

Query: 285 RMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWL 344
           RM+        N  +  +L     KN R +E                V I  G+  K   
Sbjct: 253 RMES----SDLNVVVYNVLIHGLCKNKRVWE---------------AVEIKNGLIQKGLT 293

Query: 345 DPKALANTLD---------EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCW 395
             +    TL          E    V+  + +  FV T   +  ++   +        F  
Sbjct: 294 ASEVTYCTLVLGLCKVQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDL 353

Query: 396 V--AYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGI 453
           V    + G    ++    ++  L + G  +  + L  ++   G+     T  ++ID +  
Sbjct: 354 VNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCR 413

Query: 454 SKKADAALKAFHDDRTLCG-PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV 512
             K D A+  F     + G  I+ +     Y+SL+    K      A++  +EMI  G+ 
Sbjct: 414 RGKLDTAIH-FLGKMIMAGIKITVYP----YNSLINGHCKLGNLSAAVSFFDEMIDKGLK 468

Query: 513 PDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY--------- 563
           P V +++ L+  +  +G      +L+  +   G+ P+ Y F  LI A  +          
Sbjct: 469 PTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRL 528

Query: 564 ---LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
              +   N+MP+  T  ++ +   KEG   +A
Sbjct: 529 FDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKA 560



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 72/164 (43%), Gaps = 1/164 (0%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           + +L+  +   G+L   +S ++E   +    +  SY  ++S Y   GK  EA   + ++ 
Sbjct: 439 YNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMT 498

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
            +G  PN+ T+T +I  L    ++  A  +F  +    +      Y +++EG        
Sbjct: 499 GKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTV 558

Query: 260 EAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREM 302
           +A  LLN+M   G  P     R  +  +   G +  A +F+ ++
Sbjct: 559 KAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDL 602



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 1/146 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +   +   +  G +E  +   N+   +  L +T SYNI++  + K G+  EA +   +
Sbjct: 752 VTYCCFLDHLAREGSMEKAVQLHNDM-LKGLLANTVSYNILVRGFCKLGRVEEATKLLDE 810

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +ID    P+  TY+ +I      G LD A+E +  +    +K  +  Y  L+ G      
Sbjct: 811 MIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGE 870

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL 283
             +A  L ++M   G  P +A   +L
Sbjct: 871 LGKAFELRDDMIRRGVKPNQATHKSL 896


>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 566

 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 83/176 (47%), Gaps = 7/176 (3%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V + +++  Y  +G +E  ++ +N+        +  +YN++++ Y K G    AV  ++Q
Sbjct: 306 VTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQ 365

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +I    +P+  T++ +I+     G+LD A+++++ +    I+  +  + I++  F    R
Sbjct: 366 MILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNR 425

Query: 258 FDEAKSLLNE--MRDDGKFPGRAMRVALERMQEMGFIQGANEFLREM-----LPDK 306
             EA   L +  MR D           ++ + + G +  AN  L EM      PDK
Sbjct: 426 SGEALHFLKKMNMRTDIAPQAFIYNPVIDVLCKGGKVDEANMILIEMEEKGCRPDK 481



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 89/206 (43%), Gaps = 18/206 (8%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP-FSTIRLIIDFYGISKKADA 459
           G + D      ++  L R   V     ++ +L+ DG+ +P   T   +I  Y  + + + 
Sbjct: 264 GCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMED 323

Query: 460 ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           A+  ++D       +     ++ Y+ L+    K      A+ V ++MI    +PDV TFS
Sbjct: 324 AMAVYNDMVA----VGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMILRRCLPDVVTFS 379

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK---------YLSNSNLM 570
            L+  +   G      K+++ + Q  ++P+A+ F ++I  +CK         +L   N+ 
Sbjct: 380 SLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGEALHFLKKMNMR 439

Query: 571 PDAATKELLKKS----LWKEGRRKEA 592
            D A +  +       L K G+  EA
Sbjct: 440 TDIAPQAFIYNPVIDVLCKGGKVDEA 465



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 1/139 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F +L+  Y   G L+  +  W E  Q     +  ++ I++  + K  ++ EA+   ++
Sbjct: 376 VTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGEALHFLKK 435

Query: 198 V-IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           + +     P +  Y  +I+ L   GK+D A  +   +     +     Y IL+ G     
Sbjct: 436 MNMRTDIAPQAFIYNPVIDVLCKGGKVDEANMILIEMEEKGCRPDKYTYTILIIGHCMKG 495

Query: 257 RFDEAKSLLNEMRDDGKFP 275
           R  EA +  ++M + G  P
Sbjct: 496 RIAEAVTFFHKMVETGCSP 514



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 42/206 (20%), Positives = 86/206 (41%), Gaps = 13/206 (6%)

Query: 76  LRSAPNADSALSIMEALKSNPNFSHNQSTLHALA-------TVLAKSQRNHELKTLIGDI 128
           LR AP A S L +  AL S     H+Q  +   A       +++ +S R+ +   L   +
Sbjct: 98  LRHAPCASSTLHLFSALHS----PHSQLAMPPSAHSYRYVISLMCQSGRHTDALQLFDQM 153

Query: 129 SSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW-NEYRQRAKLLSTESYNIVMSVYAKTGK 187
           +       +  F++ +     +  L    +   ++  Q    +   +YN +M ++   G+
Sbjct: 154 TDQSGYFPNARFLSFLSGSCAAAGLLDAAAALLSKASQFGCSIEAYAYNKLMDLFIGHGR 213

Query: 188 NFEAVETFRQVIDEGAI-PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
             +AV  F   I  G   P+  ++ V+I+ +  +G +  ALE+   +        +  + 
Sbjct: 214 VQDAVALFEGWIQGGVYSPDVWSFNVVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHN 273

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDG 272
           ILV G    +   + + +L  ++ DG
Sbjct: 274 ILVNGLCRAKEVSKGREVLRRLQRDG 299


>gi|302754000|ref|XP_002960424.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
 gi|300171363|gb|EFJ37963.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
          Length = 321

 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 52/102 (50%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YNI++  + K  K   A+E  +++   G  PN  TY   +  L   GK+D AL +F A+
Sbjct: 82  TYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAM 141

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              +I+     Y  L++G     +  EA SLL+EM + G  P
Sbjct: 142 TEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVP 183



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 34/80 (42%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           +  L+  L K  R  DA  ++E M   G  P+   F+G+M     +G           +R
Sbjct: 13  FGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGRSAEAYGYIETMR 72

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
             GV P    + +LI  +CK
Sbjct: 73  SMGVSPTIVTYNILIDGFCK 92



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/111 (21%), Positives = 48/111 (43%)

Query: 165 QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
           ++  + +  ++ I++    K  +  +A E    + + G  PN+  +  +++ L   G+  
Sbjct: 3   EKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGRSA 62

Query: 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            A      +  M +  T   Y IL++GF   E+   A  +L EM   G  P
Sbjct: 63  EAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEP 113


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 115/521 (22%), Positives = 206/521 (39%), Gaps = 80/521 (15%)

Query: 71  IVTHALRSAPNADSALSIMEAL---KSNPNFSHNQSTLHALATVLAKSQRNHEL-----K 122
           ++ HAL      + A+ ++E +      P+       +H L     K+ R HE      +
Sbjct: 240 MLIHALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLC----KAGRIHEAAKLHDR 295

Query: 123 TLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS------TESYN 176
            L+ D ++            L+Q Y   G     L    +  +   +LS      T  YN
Sbjct: 296 MLLRDFTADA----------LIQGYLMHG-----LCRMGKVDEARAMLSKIPNPNTVLYN 340

Query: 177 IVMSVYAKTGKNFEAVET-FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
            +++ Y  +G+  EA +  ++ ++  G  P++ T+ +MI+ L   G L SALE    +  
Sbjct: 341 TLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVK 400

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQG 294
              +     Y IL++GF     F+EA  ++N M   G           +  + + G IQ 
Sbjct: 401 KGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQD 460

Query: 295 ANEFLREM-----LPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKAL 349
           A +   EM      PD    N   Y    +D  +E          A G+  +  L    +
Sbjct: 461 ALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEE----------ALGL-YRDMLLEGVI 509

Query: 350 ANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYAL 409
           ANT+  ++  + + L         +LV ++   F+                G   D    
Sbjct: 510 ANTV-TYNTLIHAFLRLELIQQADKLVGEM--RFR----------------GCPLDNITY 550

Query: 410 EKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD--D 467
             ++  L + G  E    LI ++  + +    ++  ++I+ +  + K + AL+   D   
Sbjct: 551 NGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQ 610

Query: 468 RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
           R L   I      + Y+SL+  L K  R  +A+N+   +   GI PD  T++ L+  +  
Sbjct: 611 RGLTPDI------VTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCY 664

Query: 528 QG-DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNS 567
           +G      Q LF  V  NG  P+   + +LI  + K  S+S
Sbjct: 665 EGLFNDACQLLFKGV-SNGFIPNEITWSILINYFVKNNSDS 704



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 110/271 (40%), Gaps = 31/271 (11%)

Query: 340 LKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQ 399
           LKP+ D K L  +L+  +P  +               CK+L       T+   F     Q
Sbjct: 44  LKPY-DLKHLQRSLNPITPSQL---------------CKLLELPLDVPTSMDLFEKAGLQ 87

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
            GY H  +    ++  L   G  +++D+L+ +++ +G     S   LI+ +YG +     
Sbjct: 88  RGYIHSFHVYYLLIDKLGNVGEFKMIDKLLKQMKDEGCVFKESLFILIMRYYGKAGLPGQ 147

Query: 460 ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           A +   D   +      FK    Y+ +L  L        A NV  +M+  GI P V TF 
Sbjct: 148 ATRLLLDMWGVYCFEPTFK---SYNVVLEILVAGNCPKVAPNVFYDMLSRGISPTVYTFG 204

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC---------KYLSNSNLM 570
            +M  F +  +      L   + ++G  P++ ++++LI A           K L    LM
Sbjct: 205 VVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFLM 264

Query: 571 ---PDAATKELLKKSLWKEGRRKEAAAVEER 598
              PD  T   +   L K GR  EAA + +R
Sbjct: 265 GCEPDVQTFNDVIHGLCKAGRIHEAAKLHDR 295



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 84/437 (19%), Positives = 166/437 (37%), Gaps = 23/437 (5%)

Query: 140 FMNLMQWYSTSG----DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF 195
           F+ +M++Y  +G       L+L  W  Y         +SYN+V+ +         A   F
Sbjct: 132 FILIMRYYGKAGLPGQATRLLLDMWGVYCFEPTF---KSYNVVLEILVAGNCPKVAPNVF 188

Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
             ++  G  P   T+ V+++    + ++DSA  +   +        S  Y +L+      
Sbjct: 189 YDMLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSEN 248

Query: 256 ERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANE-----FLREMLPDKRIK 309
            R +EA  LL EM   G  P  +     +  + + G I  A +      LR+   D  I+
Sbjct: 249 NRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQ 308

Query: 310 NVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF 369
               +        DE     S +     V     ++   ++   +E    +   +  A F
Sbjct: 309 GYLMHGLCRMGKVDEARAMLSKIPNPNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGF 368

Query: 370 ---VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVD 426
               +T  ++   L       +A  F   +  + G+  +V     ++    + GH E   
Sbjct: 369 EPDAFTFNIMIDGLCKKGYLVSALEFLDEMV-KKGFEPNVITYTILIDGFCKQGHFEEAS 427

Query: 427 RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSS 485
           +++  + + G+ L       +I       K   AL+ + +     C P      +  ++S
Sbjct: 428 KVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPD-----IYTFNS 482

Query: 486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
           L+  L K  +  +A+ +  +M+  G++ +  T++ L++ F      +   KL   +R  G
Sbjct: 483 LIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRG 542

Query: 546 VEPDAYMFKVLIQAYCK 562
              D   +  LI+A CK
Sbjct: 543 CPLDNITYNGLIKALCK 559



 Score = 40.8 bits (94), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 88/209 (42%), Gaps = 25/209 (11%)

Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL 461
           +T D      ++  L R G V+    +++K+ +    L ++T+   I+ Y +S + + A 
Sbjct: 301 FTADALIQGYLMHGLCRMGKVDEARAMLSKIPNPNTVL-YNTL---INGYVVSGRFEEAK 356

Query: 462 KAFHDDRTLCG-PISKFKLMLLYSSLLRTLTKCKRDF--DAINVLEEMIFSGIVPDVQTF 518
              + +  + G     F   ++   L      CK+ +   A+  L+EM+  G  P+V T+
Sbjct: 357 DLLYKNMVIAGFEPDAFTFNIMIDGL------CKKGYLVSALEFLDEMVKKGFEPNVITY 410

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSN 566
           + L+  F  QG  +   K+ + +   G+  +   +  LI A CK             +S+
Sbjct: 411 TILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSS 470

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEAAAV 595
               PD  T   L   L K  + +EA  +
Sbjct: 471 KGCKPDIYTFNSLIYGLCKNDKMEEALGL 499


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 94/535 (17%), Positives = 186/535 (34%), Gaps = 76/535 (14%)

Query: 106 HALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQ 165
           +AL + L  ++++ +   L  ++ +  F   +  +  L++ +   G +   +S +++ + 
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 166 RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
              L +  + N ++    + G+   A++ FR++     +P S ++ +++      G++  
Sbjct: 61  SGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRD 120

Query: 226 ALEVFSALPLMRIKRTSKQYLILVEGFV----GVERFDEAKSLLNEMRDDGKFPG-RAMR 280
           AL     +        +  Y ++++G         R ++A     EM+  G  P   +  
Sbjct: 121 ALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYH 180

Query: 281 VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQL 340
           + L  + + G +  A+     M     I       DG        +  +    I     L
Sbjct: 181 ILLSALSDSGRMAEAHALFSAMTCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEI-----L 235

Query: 341 KPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQP 400
           K   +P                       V+T  ++          E AW  F     + 
Sbjct: 236 KAGYEPN----------------------VFTYSIIINCYCKLDKVEEAWEVF-MKMIES 272

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY-----GISK 455
               +      ++    + G +E   +L A++   G +    T   +ID       G+  
Sbjct: 273 NCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYT 332

Query: 456 KAD------------------AALKAFHDDRTLCGPISKFKLM--------LLYSSLLRT 489
             D                  + ++ F D R L   +  F  M        + YS L+  
Sbjct: 333 AVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGKCAPNVITYSILIDG 392

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
           L K +R  +A   LE+M   G  P V T+ GL+  F   G+ K     F  ++  G  P+
Sbjct: 393 LCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPN 452

Query: 550 AYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
             +F  LI   CK            ++      PD  T   L   L    R ++A
Sbjct: 453 TVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDA 507



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 85/406 (20%), Positives = 152/406 (37%), Gaps = 40/406 (9%)

Query: 77  RSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNV 136
           +SA   + A+   + +K++     +  + H L + L+ S R  E   L   ++ S  +  
Sbjct: 152 KSANRLEQAMEFFKEMKAS-GVEPDLESYHILLSALSDSGRMAEAHALFSAMTCSPDI-- 208

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
            + +  LM  Y   G      S   E  +     +  +Y+I+++ Y K  K  EA E F 
Sbjct: 209 -MTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFM 267

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV--- 253
           ++I+   +PN+ T+  +I      G L+ A+++F+ +  +  K T   Y  L++      
Sbjct: 268 KMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKR 327

Query: 254 -GVERFDEAKSLLNEMRDDGKFP--------------GRAMRVALERMQEMGFIQGANEF 298
            GV     A  L N++   G  P               R +  A++   EM      N  
Sbjct: 328 GGVYT---AVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGKCAPNVI 384

Query: 299 LREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSP 358
              +L D   K VR  ++ +   ED      +   + YG  +  +     L + L  +  
Sbjct: 385 TYSILIDGLCK-VRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEK 443

Query: 359 EVVSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTIL 416
             ++  A    ++ T +  +CK  R         H      +  G   DV     +++ L
Sbjct: 444 MKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHM-----HAEGCKPDVITYNCLISGL 498

Query: 417 ARHGHVELVDRLIAKLRSDGMRLP--FSTIRLIIDFYGISKKADAA 460
                VE   RL      DGM      +T   +I      KK + A
Sbjct: 499 CSANRVEDAQRLF-----DGMACAPNVTTFNFLIRGLCAQKKVEEA 539



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 15/133 (11%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y  LL  L+   R  +A  +   M  S   PD+ T++ LM  +   G     Q L   + 
Sbjct: 179 YHILLSALSDSGRMAEAHALFSAMTCS---PDIMTYNVLMDGYCKIGQTYEAQSLMKEIL 235

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
           + G EP+ + + ++I  YCK             +  SN +P+A T   L     K G  +
Sbjct: 236 KAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLE 295

Query: 591 EAAAVEERCEKIN 603
           +A  +    EKI 
Sbjct: 296 DAIKLFAEMEKIG 308



 Score = 43.5 bits (101), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 95/240 (39%), Gaps = 43/240 (17%)

Query: 75  ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFL 134
            L SA   D AL + + + +   F+ N  T + L     K  + H+  ++  D+ SS  L
Sbjct: 6   GLVSARKHDQALRLFKEVLAGL-FAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLL 64

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK------- 187
             +     L+      G +   L  + E +    L ++ S+NI++  +   G+       
Sbjct: 65  PNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAH 124

Query: 188 ----------------NF----------------EAVETFRQVIDEGAIPNSRTYTVMIE 215
                           N                 +A+E F+++   G  P+  +Y +++ 
Sbjct: 125 LQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLS 184

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            L + G++  A  +FSA   M        Y +L++G+  + +  EA+SL+ E+   G  P
Sbjct: 185 ALSDSGRMAEAHALFSA---MTCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEP 241



 Score = 40.0 bits (92), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 31/166 (18%), Positives = 68/166 (40%), Gaps = 3/166 (1%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T   L   L K +R  E    + D+ +  +    V +  L+  +   G+L+  L  +
Sbjct: 382 NVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFF 441

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            + +      +T  +N ++    K  +  + +     +  EG  P+  TY  +I  L + 
Sbjct: 442 EKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSA 501

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
            +++ A  +F     M        +  L+ G    ++ +EA+++L+
Sbjct: 502 NRVEDAQRLFDG---MACAPNVTTFNFLIRGLCAQKKVEEARNILD 544


>gi|242067062|ref|XP_002454820.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
 gi|241934651|gb|EES07796.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
          Length = 600

 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 99/220 (45%), Gaps = 4/220 (1%)

Query: 85  ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
           AL + + +++    + +     AL T LA+++     + +  +++ +  L VS +  N M
Sbjct: 133 ALRVFDQMRAR-GLAPDAHACTALLTALARARMTATARRVFDEMARAG-LAVSTHVYNAM 190

Query: 145 QWYS-TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
                 +GD     +           L   SYN V+++Y K G  +EA+    ++  EG 
Sbjct: 191 LHVCLKAGDAARAEALVTRMDAAGVPLDRFSYNTVIALYCKKGMRYEAMCVRDRMDKEGI 250

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
             ++ T+  +I  L   G++  A ++F+ +   +    +  Y  L++G+      +EA  
Sbjct: 251 RADTVTWNSLIHGLCKYGRVKEAAQLFTEMAAAQATPDNVTYTTLIDGYCRAGNIEEAVK 310

Query: 264 LLNEMRDDGKFPGRAMRVA-LERMQEMGFIQGANEFLREM 302
           L  EM   G  PG A   A L ++ E G ++  N+ L EM
Sbjct: 311 LRGEMEATGMLPGVATYNAILRKLCEDGKMKEVNQLLNEM 350



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 70/172 (40%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T ++L   L K  R  E   L  ++++++    +V +  L+  Y  +G++E  +    E 
Sbjct: 256 TWNSLIHGLCKYGRVKEAAQLFTEMAAAQATPDNVTYTTLIDGYCRAGNIEEAVKLRGEM 315

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
                L    +YN ++    + GK  E  +   ++ +     +  T   +I      G +
Sbjct: 316 EATGMLPGVATYNAILRKLCEDGKMKEVNQLLNEMDERKVQADHVTCNTLINAYCKRGHM 375

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            SA +V   +    ++     Y  L+ GF   +  DEAK    +M D G  P
Sbjct: 376 TSACKVKKKMMESGLQLNQFTYKALIHGFCKAKELDEAKEAFFQMVDAGFSP 427



 Score = 45.8 bits (107), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 83/205 (40%), Gaps = 20/205 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D +A   +LT LAR        R+  ++   G  L  ST       +   K  DAA
Sbjct: 144 GLAPDAHACTALLTALARARMTATARRVFDEMARAG--LAVSTHVYNAMLHVCLKAGDAA 201

Query: 461 -LKAFHDDRTLCG-PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
             +A        G P+ +F     Y++++    K    ++A+ V + M   GI  D  T+
Sbjct: 202 RAEALVTRMDAAGVPLDRFS----YNTVIALYCKKGMRYEAMCVRDRMDKEGIRADTVTW 257

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSN 566
           + L++     G  K   +LF+ +      PD   +  LI  YC+             +  
Sbjct: 258 NSLIHGLCKYGRVKEAAQLFTEMAAAQATPDNVTYTTLIDGYCRAGNIEEAVKLRGEMEA 317

Query: 567 SNLMPDAATKELLKKSLWKEGRRKE 591
           + ++P  AT   + + L ++G+ KE
Sbjct: 318 TGMLPGVATYNAILRKLCEDGKMKE 342



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 40/80 (50%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++L+    +     +A+ +  EM  +G++P V T++ ++      G  K V +L + + 
Sbjct: 292 YTTLIDGYCRAGNIEEAVKLRGEMEATGMLPGVATYNAILRKLCEDGKMKEVNQLLNEMD 351

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
           +  V+ D      LI AYCK
Sbjct: 352 ERKVQADHVTCNTLINAYCK 371



 Score = 39.3 bits (90), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 12/122 (9%)

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           ++LL  L + +    A  V +EM  +G+      ++ +++     GD    + L + +  
Sbjct: 153 TALLTALARARMTATARRVFDEMARAGLAVSTHVYNAMLHVCLKAGDAARAEALVTRMDA 212

Query: 544 NGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKE 591
            GV  D + +  +I  YCK             +    +  D  T   L   L K GR KE
Sbjct: 213 AGVPLDRFSYNTVIALYCKKGMRYEAMCVRDRMDKEGIRADTVTWNSLIHGLCKYGRVKE 272

Query: 592 AA 593
           AA
Sbjct: 273 AA 274


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 106/267 (39%), Gaps = 42/267 (15%)

Query: 67  LDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHEL 121
           L P +VT+      L S    D AL + + + S      N  T +AL     K +   E 
Sbjct: 330 LQPNVVTYNSLINGLCSNGKLDEALGLQDKM-SGMGLKPNVVTYNALINGFCKKKMLKEA 388

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV---------------LSTWN----- 161
           + ++ DI         + F  L+  Y  +G ++                 +ST+N     
Sbjct: 389 REMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVG 448

Query: 162 --------EYRQRAKLLSTE-------SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206
                   E R+ AK +          +YNI++    K G+  +AV    ++ + G  P+
Sbjct: 449 FCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPS 508

Query: 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
             TY  +I+     G   +AL V + +     +     Y +L++GF    + +EA  LLN
Sbjct: 509 HLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLN 568

Query: 267 EMRDDGKFPGRAMRVAL-ERMQEMGFI 292
           EM + G  P R     L + M E GFI
Sbjct: 569 EMLEKGLIPNRTTYDILRDEMMEKGFI 595



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 10/165 (6%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   +V     ++  L  +G ++    L  K+   G++    T   +I+  G  KK    
Sbjct: 329 GLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALIN--GFCKK---- 382

Query: 461 LKAFHDDRTLCGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
            K   + R +   I K  L   ++ +++L+    K  R  DA  +   M+ +G+ P+V T
Sbjct: 383 -KMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVST 441

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           ++ L+  F  +G+ K  +KL   +  NG++ D   + +L+ A CK
Sbjct: 442 YNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCK 486



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 75/175 (42%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T   +   L K  +  +   ++ D+ +  F    + +  ++  Y  +G +    +  
Sbjct: 228 NVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALL 287

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            E   +    +  ++NI++  + +      A + F ++  +G  PN  TY  +I  L + 
Sbjct: 288 KEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSN 347

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           GKLD AL +   +  M +K     Y  L+ GF   +   EA+ +L+++   G  P
Sbjct: 348 GKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAP 402



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 57/125 (45%)

Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
           G + +V S + E  +R   ++  ++++V++   K GK  +A +    +   G  P+  TY
Sbjct: 208 GRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITY 267

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
             +I+     GK+  A  +   +   RI      + IL++GF   E    AK +  EM+ 
Sbjct: 268 NTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQR 327

Query: 271 DGKFP 275
            G  P
Sbjct: 328 QGLQP 332



 Score = 42.0 bits (97), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 76/191 (39%), Gaps = 4/191 (2%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           AD+ L  M A + +PN    + T + L     + +     K +  ++         V + 
Sbjct: 283 ADALLKEMVAKRIHPN----EITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYN 338

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
           +L+    ++G L+  L   ++        +  +YN +++ + K     EA E    +   
Sbjct: 339 SLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKR 398

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G  PN  T+  +I+     G++D A  + S +    +      Y  L+ GF       EA
Sbjct: 399 GLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEA 458

Query: 262 KSLLNEMRDDG 272
           + L  EM  +G
Sbjct: 459 RKLAKEMEGNG 469



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 12/125 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y++++    K  + F A  +L+EM+   I P+  TF+ L+  F    +    +K+F 
Sbjct: 264 VITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFE 323

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEG 587
            +++ G++P+   +  LI   C              +S   L P+  T   L     K+ 
Sbjct: 324 EMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKK 383

Query: 588 RRKEA 592
             KEA
Sbjct: 384 MLKEA 388



 Score = 40.4 bits (93), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 40/195 (20%), Positives = 84/195 (43%), Gaps = 19/195 (9%)

Query: 74  HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKF 133
           H L +A N +   +++++   N ++S N +  H+L+ + +    N    ++I D+     
Sbjct: 115 HLLANAKNYNKIRALLDSFAKNAHYS-NSTIFHSLSVLGSWGCAN----SIIVDM----- 164

Query: 134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE 193
                    L+  Y  +G+++L L  ++        LS  S N ++    K G+      
Sbjct: 165 ---------LVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVES 215

Query: 194 TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
            ++++I      N  T+ V+I  L  +GK   A +V   +       +   Y  +++G+ 
Sbjct: 216 VYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYC 275

Query: 254 GVERFDEAKSLLNEM 268
              +  +A +LL EM
Sbjct: 276 KAGKMFKADALLKEM 290


>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
 gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 97/233 (41%), Gaps = 21/233 (9%)

Query: 45  SIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQST 104
           +I +A     +   S    DR L P I    ++   N       +E  + N N +H  ST
Sbjct: 16  TIAIARFHGQTQGGSRFYPDRQLTPLIAFEVIKRFNNPKVGFKFLEFSRLNLNVNHCYST 75

Query: 105 LHALATVLAKSQRNHELKTLI-------GDISSSKFLNVSVNFMNLMQWYSTSGDLELVL 157
            + L   L +   +H+L  ++       G +  SK L        L+ W + + D ++V 
Sbjct: 76  YNLLMRSLCQ-MGHHDLVNIVFDYMGSDGHLPDSKLLGF------LVTWMAQASDFDMVK 128

Query: 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217
               E + +   +++  YN ++SV  K  +  EA+  F++ +   + P++ T+ ++I  L
Sbjct: 129 KLLAEVQGKEVRINSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGL 188

Query: 218 VNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV-------GVERFDEAKS 263
             +G +D A EVF  +           Y  L+ G         G E F E +S
Sbjct: 189 CRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQS 241



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 82/202 (40%), Gaps = 19/202 (9%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           D +    ++  L R G V+    +   + S G      T   +I+    + +     + F
Sbjct: 177 DTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELF 236

Query: 465 HD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
            +   R+ C P      ++ Y+S++    K  +  +A N+ EEM+ SGI P+V TF+ L+
Sbjct: 237 KEIQSRSDCSPD-----IVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLI 291

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLM 570
             F   G+    + ++  +       D   F  LI  YC+             +   N+ 
Sbjct: 292 DGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVS 351

Query: 571 PDAATKELLKKSLWKEGRRKEA 592
           P   T  +L  +L KE R  EA
Sbjct: 352 PTVYTYAVLINALCKENRLNEA 373



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 94/234 (40%), Gaps = 19/234 (8%)

Query: 378 KVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM 437
           +V++ F +P+  + F  +        H       ++  L + GH +LV+ +   + SDG 
Sbjct: 45  EVIKRFNNPKVGFKFLEFSRLNLNVNHCYSTYNLLMRSLCQMGHHDLVNIVFDYMGSDG- 103

Query: 438 RLPFSTI-RLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
            LP S +   ++ +   +   D   K   + +     I+ F    +Y++LL  L K  + 
Sbjct: 104 HLPDSKLLGFLVTWMAQASDFDMVKKLLAEVQGKEVRINSF----VYNNLLSVLVKQNQV 159

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
            +AI + +E +     PD  TF+ L+      G      ++F  +   G  PD   +  L
Sbjct: 160 HEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTL 219

Query: 557 IQAYCK-------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
           I   CK               S S+  PD  T   +     K G+ KEA+ + E
Sbjct: 220 INGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFE 273



 Score = 46.2 bits (108), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 29/166 (17%), Positives = 74/166 (44%), Gaps = 1/166 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V + +++  +  SG ++   + + E  +     +  ++N+++  + K G   EA   +R+
Sbjct: 250 VTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRK 309

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +       +  T+T +I+     G+++  L+ ++ +    +  T   Y +L+       R
Sbjct: 310 MAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENR 369

Query: 258 FDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
            +EA+  L ++++    P   M    ++   + G +   N  L+EM
Sbjct: 370 LNEARDFLGQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEM 415



 Score = 43.5 bits (101), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 29/131 (22%), Positives = 53/131 (40%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F +L+  Y  +G +   L  WN  + R    +  +Y ++++   K  +  EA +   Q
Sbjct: 320 VTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQ 379

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + +   IP    Y  +I+     G +D    +   +   R       + IL+ G     R
Sbjct: 380 IKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGR 439

Query: 258 FDEAKSLLNEM 268
             EA ++ N M
Sbjct: 440 MFEAINIFNRM 450


>gi|218188821|gb|EEC71248.1| hypothetical protein OsI_03217 [Oryza sativa Indica Group]
          Length = 571

 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 5/223 (2%)

Query: 60  SLLNDRLLDPFIVTHA----LRSAPNADSALSIMEALKSNPNFSH-NQSTLHALATVLAK 114
           SLL D     F  T A    L  A  +D+A+ I +A++   N    +  + + +   L +
Sbjct: 159 SLLADMRAAGFAPTTATYNVLVKAHCSDAAVPIDDAVRVFRNIPKPDACSYNTVIDGLCR 218

Query: 115 SQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTES 174
             R  E + L  ++ ++      V +  L+ W +     +  L  ++E  +R  + +  +
Sbjct: 219 RGRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRGIMPNVVT 278

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           Y+ ++    K G+   AVE   +++ E  +PN+ TY+ +I+ L   G L  A+E+   + 
Sbjct: 279 YSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEILDRMR 338

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR 277
           L   K  +  +  L+ G     R  EA + L+EM   G  P R
Sbjct: 339 LQGRKPDAGLFGKLIVGLCDAGRALEASNYLDEMNFAGIRPNR 381



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 97/243 (39%), Gaps = 22/243 (9%)

Query: 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR 445
           P  A H F       G  H   +   +L  L  H H+ L   L+A +R+ G     +T  
Sbjct: 118 PLAALHLFRSAPSALGLPHSARSYTAVLAALVAHSHLSLARSLLADMRAAGFAPTTATYN 177

Query: 446 LIIDFYG--ISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVL 503
           +++  +    +   D A++ F   R +  P +       Y++++  L +  R  +A ++ 
Sbjct: 178 VLVKAHCSDAAVPIDDAVRVF---RNIPKPDA-----CSYNTVIDGLCRRGRLPEARDLF 229

Query: 504 EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK- 562
            EMI +G  P V T++ L++  A +       KLF  + + G+ P+   +  LI   CK 
Sbjct: 230 AEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRGIMPNVVTYSSLIDGLCKG 289

Query: 563 -----------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALR 611
                       +     +P+  T   +   L KEG   +A  + +R       P   L 
Sbjct: 290 GRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEILDRMRLQGRKPDAGLF 349

Query: 612 GHI 614
           G +
Sbjct: 350 GKL 352



 Score = 47.0 bits (110), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 10/160 (6%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           D  +   ++  L R G +     L A++ ++G      T   +I +       D ALK F
Sbjct: 205 DACSYNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLF 264

Query: 465 HDDRTLCGPISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL 521
            +       +++  +M   + YSSL+  L K  R   A+ +L+ M+    +P+  T+S +
Sbjct: 265 DE-------MARRGIMPNVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSV 317

Query: 522 MYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           +     +G      ++   +R  G +PDA +F  LI   C
Sbjct: 318 IDGLCKEGCLGQAMEILDRMRLQGRKPDAGLFGKLIVGLC 357


>gi|302757523|ref|XP_002962185.1| hypothetical protein SELMODRAFT_77345 [Selaginella moellendorffii]
 gi|300170844|gb|EFJ37445.1| hypothetical protein SELMODRAFT_77345 [Selaginella moellendorffii]
          Length = 442

 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 104/235 (44%), Gaps = 15/235 (6%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNP 96
           +I  +  A + N +  +   +N +   P I+ +      L  A   D A  +++ + S  
Sbjct: 50  VITGLCKAGKLNRACEVFQEMNRKGWKPDIIVYTSLVDGLSKASMMDEARKLLQEIVSR- 108

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLI---GDISSSKFLNVSVNFMNLMQWYSTSGDL 153
                + T  +  + L K+ R  E   L+   G + +++ L+       +   Y   G +
Sbjct: 109 GMKPTEVTYTSFISGLCKNGRVEEAGKLVREMGKMCAAEVLHC------IFGGYVLEGKI 162

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           E  L+  +E  ++   L    Y  ++       +N EA E F  ++ +G +P++RTY ++
Sbjct: 163 EEALALKDEMVKKGVTLDVRCYTNLIHGLFYVRRNDEAQEMFEAMVQQGYVPDTRTYGMI 222

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           + H    GK+ +A +V   +    ++     Y  L++GF+GV R  EA ++ + M
Sbjct: 223 VSHFCKQGKMQAACKVVEIMDAAGLEANCHIYNSLMDGFLGVNRAREAINVYDTM 277



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 96/392 (24%), Positives = 160/392 (40%), Gaps = 42/392 (10%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y  +++   K  +  +A+  F +++     P+ RT+TV+I  L   GKL+ A EVF  +
Sbjct: 11  AYTAIINALFKAHRPDQAIACFERMVARKCDPDLRTFTVVITGLCKAGKLNRACEVFQEM 70

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
                K     Y  LV+G       DEA+ LL E+   G  P      +        FI 
Sbjct: 71  NRKGWKPDIIVYTSLVDGLSKASMMDEARKLLQEIVSRGMKPTEVTYTS--------FIS 122

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTL 353
           G              KN R  E G    E         +   +G  +      +ALA   
Sbjct: 123 GL------------CKNGRVEEAGKLVREMGKMCAAEVLHCIFGGYVLEGKIEEALA-LK 169

Query: 354 DEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKML 413
           DE   + V+L  D +    T L+   L + +  + A   F  +  Q GY  D      ++
Sbjct: 170 DEMVKKGVTL--DVR--CYTNLI-HGLFYVRRNDEAQEMFEAMVQQ-GYVPDTRTYGMIV 223

Query: 414 TILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID-FYGISKKADAALKAFHDD--RTL 470
           +   + G ++   +++  + + G+         ++D F G+++  +A     +D   R +
Sbjct: 224 SHFCKQGKMQAACKVVEIMDAAGLEANCHIYNSLMDGFLGVNRAREAI--NVYDTMLRKM 281

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM-IFSGIVPDVQTFSGLMYHFALQG 529
             P      ++ Y+ L+  L K  +  DA  VL EM    GIVP + ++  L++     G
Sbjct: 282 VMPS-----IVTYNILMLGLCKLGQTADARLVLREMRERDGIVPTIVSYRTLIHGLGKAG 336

Query: 530 --DEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
             DE I   +F+ +  NGV PD      LIQA
Sbjct: 337 RADEAI--DVFTEMVDNGVVPDCPSCTSLIQA 366



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 97/222 (43%), Gaps = 11/222 (4%)

Query: 70  FIVTHALRSAP--NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD 127
            IV+H  +      A   + IM+A     N     S +     V    +  +   T++  
Sbjct: 221 MIVSHFCKQGKMQAACKVVEIMDAAGLEANCHIYNSLMDGFLGVNRAREAINVYDTMLRK 280

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST-ESYNIVMSVYAKTG 186
           +     +  ++  + L +   T+ D  LVL    E R+R  ++ T  SY  ++    K G
Sbjct: 281 MVMPSIVTYNILMLGLCKLGQTA-DARLVL---REMRERDGIVPTIVSYRTLIHGLGKAG 336

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
           +  EA++ F +++D G +P+  + T +I+ L    ++D A ++   +P M I   +  Y 
Sbjct: 337 RADEAIDVFTEMVDNGVVPDCPSCTSLIQALAMADRMDEATQLLRDMPRMGITPDALAYN 396

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPG----RAMRVALE 284
            LV+   G  +   A  +L EM D+   P     RAM++  +
Sbjct: 397 ALVKVLCGGAKVGPAWDVLVEMMDNSCVPDGSTFRAMKLGFK 438



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 88/206 (42%), Gaps = 20/206 (9%)

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
           L ++G VE   +L+   R  G       +  I   Y +  K + AL A  D+    G   
Sbjct: 124 LCKNGRVEEAGKLV---REMGKMCAAEVLHCIFGGYVLEGKIEEAL-ALKDEMVKKGVTL 179

Query: 476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ 535
             +    Y++L+  L   +R+ +A  + E M+  G VPD +T+  ++ HF  QG  +   
Sbjct: 180 DVRC---YTNLIHGLFYVRRNDEAQEMFEAMVQQGYVPDTRTYGMIVSHFCKQGKMQAAC 236

Query: 536 KLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSL 583
           K+  ++   G+E + +++  L+  +               +    +MP   T  +L   L
Sbjct: 237 KVVEIMDAAGLEANCHIYNSLMDGFLGVNRAREAINVYDTMLRKMVMPSIVTYNILMLGL 296

Query: 584 WKEGRRKEAAAV-EERCEKINDVPSL 608
            K G+  +A  V  E  E+   VP++
Sbjct: 297 CKLGQTADARLVLREMRERDGIVPTI 322



 Score = 46.2 bits (108), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 41/79 (51%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y +L+  L K  R  +AI+V  EM+ +G+VPD  + + L+   A+        +L   + 
Sbjct: 325 YRTLIHGLGKAGRADEAIDVFTEMVDNGVVPDCPSCTSLIQALAMADRMDEATQLLRDMP 384

Query: 543 QNGVEPDAYMFKVLIQAYC 561
           + G+ PDA  +  L++  C
Sbjct: 385 RMGITPDALAYNALVKVLC 403


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 103/541 (19%), Positives = 200/541 (36%), Gaps = 56/541 (10%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPN-FSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           + H  R++   D AL  M AL   PN FS+N   L  L       Q  H L T++ D + 
Sbjct: 141 LCHDKRTSDAMDIALRRMPALGCTPNAFSYN-ILLKGLCDENRSQQALHLLHTMMADDTR 199

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                  V++  ++      G L+     ++E   +    +  +YN ++  Y  +GK  E
Sbjct: 200 GGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKE 259

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A+  FR++  +G  P+  TY  ++ +L   G+   A +VF ++     K  S  Y  L+ 
Sbjct: 260 AIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLH 319

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIK 309
           G+       +   LL+ M  +G  P   +  + +    + G +  A     +M       
Sbjct: 320 GYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHP 379

Query: 310 NVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF 369
           N+                      + YG  +        + + + ++   +   L     
Sbjct: 380 NI----------------------VTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGV 417

Query: 370 VWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDR 427
           V+ T +  +C   +  K+ E A           G   +      +L  L + G V     
Sbjct: 418 VFRTLIHGLCACDKWDKAEELAVEMI-----GRGICPNTIFFNTLLNHLCKEGMVTRAKN 472

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLL 487
           +   +    ++    T   +ID Y +  K D A K   +   L G        + Y++++
Sbjct: 473 IFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLL-EGMVLDGVKPN---EVTYNTII 528

Query: 488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE 547
               K  R  DA ++  +M   G+ P +  +S +++           ++L+  + + G++
Sbjct: 529 NGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKELYLWMIKCGIK 588

Query: 548 PDAYMFKVLIQAYCKYLSNSNLMPDAA----------------TKELLKKSLWKEGRRKE 591
                + +++Q  C+    +N   DA                 T  ++  +L K GR  E
Sbjct: 589 LPIGTYNIILQGLCQ----NNCTDDALRMFHNLCLIDFHLQNRTFNIMIDALLKGGRHDE 644

Query: 592 A 592
           A
Sbjct: 645 A 645



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 93/210 (44%), Gaps = 16/210 (7%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   DV +   ++  L R G ++    L  ++   GM     T   ++  Y  S K   A
Sbjct: 201 GCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEA 260

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           +  F   R +C    +  + + Y++L+  L K  R  +A  V + M+  G  PD   +  
Sbjct: 261 IGIF---RKMCRDGVEPDV-VTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGT 316

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSN 568
           L++ +A +G    + +L  ++ +NG +PD Y+F +LI AY K+            +    
Sbjct: 317 LLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQG 376

Query: 569 LMPDAATKELLKKSLWKEGRRKEAAAVEER 598
           L P+  T   +  +L + G+  +A +  +R
Sbjct: 377 LHPNIVTYGTVMDALCRVGKVDDAMSQFDR 406



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 94/467 (20%), Positives = 174/467 (37%), Gaps = 66/467 (14%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV-FSA 232
           +Y+IV+   ++ G    A     +VI  G    + T++ +++ L +  +   A+++    
Sbjct: 98  TYSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITFSPLLKGLCHDKRTSDAMDIALRR 157

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFI 292
           +P +     +  Y IL++G     R  +A  LL+ M  D    G    V       + + 
Sbjct: 158 MPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDV-------VSYT 210

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLD---PKAL 349
              N  LRE   DK            D+  D+    N    I Y   L  +     PK  
Sbjct: 211 TVINGLLREGQLDKAYCLF-------DEMLDQGMSPNC---ITYNCLLHGYCSSGKPKEA 260

Query: 350 ANTL-----DEWSPEVVS-------LLADAKFVWTTRLVCKVLRHFKSPE-----TAWHF 392
                    D   P+VV+       L  + + +   ++   +++    P+     T  H 
Sbjct: 261 IGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHG 320

Query: 393 FCWVAY------------QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP 440
           +    Y            + G   D Y    ++   A+HG V+      +K+R  G+   
Sbjct: 321 YATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPN 380

Query: 441 FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAI 500
             T   ++D      K D A+  F  DR +   ++     +++ +L+  L  C +   A 
Sbjct: 381 IVTYGTVMDALCRVGKVDDAMSQF--DRLISEGLTPNG--VVFRTLIHGLCACDKWDKAE 436

Query: 501 NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
            +  EMI  GI P+   F+ L+ H   +G     + +F ++ +  V+ D   +  LI  Y
Sbjct: 437 ELAVEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGY 496

Query: 561 C---------KYLSN---SNLMPDAATKELLKKSLWKEGRRKEAAAV 595
           C         K L       + P+  T   +     K GR ++A ++
Sbjct: 497 CLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSL 543



 Score = 43.1 bits (100), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 20/165 (12%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIF----SGIVPDVQTFSGLMYHFALQGDEKIVQKLF 538
           Y+ LL+ L    R   A+++L  M+      G  PDV +++ ++     +G       LF
Sbjct: 170 YNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLF 229

Query: 539 SMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKE 586
             +   G+ P+   +  L+  YC            + +    + PD  T   L   L K 
Sbjct: 230 DEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKN 289

Query: 587 GRRKEAAAVEERCEKINDVPSLALRG---HIWAVSSADLTRVHSI 628
           GR  EA  V +   K    P  ++ G   H +A +   L ++H +
Sbjct: 290 GRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYA-TEGYLVQMHQL 333



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 1/142 (0%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN +++ Y K G+  +A   FRQ+  +G  P    Y+ ++  L    ++ +A E++  +
Sbjct: 523 TYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKELYLWM 582

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLL-NEMRDDGKFPGRAMRVALERMQEMGFI 292
               IK     Y I+++G       D+A  +  N    D     R   + ++ + + G  
Sbjct: 583 IKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDALLKGGRH 642

Query: 293 QGANEFLREMLPDKRIKNVRYY 314
             A +    +L    + NV  Y
Sbjct: 643 DEAKDLFASLLARGLVPNVVTY 664


>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 625

 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 4/168 (2%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+     SGD+E   +  +E   +       +YN ++S+Y K G ++EA+    ++  EG
Sbjct: 206 LIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEREG 265

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  TY  +I      G++  A+ +F  +        +  Y  L++G+  +   D+A 
Sbjct: 266 IKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRDATPNHVT--YTTLIDGYCRLNDLDQAL 323

Query: 263 SLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIK 309
            L  EM   G +P        L ++ E+G I+ AN+ L EM  +K+I+
Sbjct: 324 RLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEM-SEKKIE 370



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 118/264 (44%), Gaps = 38/264 (14%)

Query: 358 PEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQ-PGYTHDVYALEKMLTIL 416
           P++ S+L  +      +++ ++  H + P  +W  F W+    P Y H + +   M+ IL
Sbjct: 32  PKICSILTASTL---HQVLYQLSLHSQGPCLSWALFKWIESSIPNYKHSLQSSWTMIHIL 88

Query: 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK 476
            +  H++    L+ K+     R   ST  ++           +AL   HDD  +   +  
Sbjct: 89  TKFKHLKTAQSLLEKI---AYRDFLSTQSVL-----------SALVRLHDDPDINSHVFS 134

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
           + L+++Y++     TK K++  AI V E M+ +G  P +   + L+   A      +V K
Sbjct: 135 W-LVIVYAN-----TKMKQE--AIQVFEHMMVNGFRPHLHACTVLLNSLAKDRLTDMVWK 186

Query: 537 LFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLW 584
           ++  + + GVE + +++ VLI A CK             + +  + PD  T   L     
Sbjct: 187 VYKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYC 246

Query: 585 KEGRRKEAAAVEERCEKINDVPSL 608
           K+G   EA +V++R E+    P +
Sbjct: 247 KKGMHYEALSVQDRMEREGIKPDI 270



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 4/172 (2%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+  Y    DL+  L    E   +    +  +YN ++    + G+  +A +   +
Sbjct: 304 VTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNE 363

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + ++   P++ T   +I     +G + SAL+V + +    +K     Y  L+ GF  +  
Sbjct: 364 MSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIRE 423

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIK 309
            D AK LL  M D G  P       L      G+    NE     LPD+ ++
Sbjct: 424 MDGAKELLLSMLDAGFSPSYCTYSWLVD----GYCNQQNEEAVLKLPDEFVR 471



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 51/255 (20%), Positives = 101/255 (39%), Gaps = 37/255 (14%)

Query: 369 FVWTTRLVCKVLRHFKSPETAWHFFCWV------------AYQ-------PGYTHDVYAL 409
           F+ T  ++  ++R    P+   H F W+            A Q        G+   ++A 
Sbjct: 109 FLSTQSVLSALVRLHDDPDINSHVFSWLVIVYANTKMKQEAIQVFEHMMVNGFRPHLHAC 168

Query: 410 EKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRT 469
             +L  LA+    ++V ++  K+   G+        ++I     S   + A     +  +
Sbjct: 169 TVLLNSLAKDRLTDMVWKVYKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMES 228

Query: 470 LCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
            C     F  +  Y++L+    K    ++A++V + M   GI PD+ T++ L++ F  +G
Sbjct: 229 KC----VFPDLFTYNTLISLYCKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEG 284

Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKE 577
             +   +LF  +R     P+   +  LI  YC+             +    L P   T  
Sbjct: 285 RMREAMRLFKEIRD--ATPNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYN 342

Query: 578 LLKKSLWKEGRRKEA 592
            + + L + GR ++A
Sbjct: 343 SILRKLCEIGRIRDA 357



 Score = 45.8 bits (107), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 46/86 (53%)

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
           +  ++ Y+S+LR L +  R  DA  +L EM    I PD  T + L+  +   GD K   K
Sbjct: 335 YPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALK 394

Query: 537 LFSMVRQNGVEPDAYMFKVLIQAYCK 562
           + + + + G++ D + +K LI  +CK
Sbjct: 395 VKNRMVEAGLKLDQFTYKALIHGFCK 420



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 93/236 (39%), Gaps = 8/236 (3%)

Query: 83  DSALSI---MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
           D AL +   MEA    P      S L  L  +     R  +   L+ ++S  K    +V 
Sbjct: 320 DQALRLREEMEAQGLYPTVVTYNSILRKLCEI----GRIRDANKLLNEMSEKKIEPDNVT 375

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
              L+  Y   GD++  L   N   +    L   +Y  ++  + K  +   A E    ++
Sbjct: 376 CNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSML 435

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           D G  P+  TY+ +++   N    ++ L++        +      Y  L+  F   E+ D
Sbjct: 436 DAGFSPSYCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSLYRALIRRFCKREQVD 495

Query: 260 EAKSLLNEMRDDGKFPGRAMRVALERMQ-EMGFIQGANEFLREMLPDKRIKNVRYY 314
            AK + + M++ G      +  +L     ++G    A++ L EM   + +  ++ Y
Sbjct: 496 YAKKIFSLMQEKGTLGDSVIYTSLAYAYWKLGKANAASDLLDEMYKRRLMITLKIY 551



 Score = 39.3 bits (90), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 34/182 (18%), Positives = 74/182 (40%), Gaps = 18/182 (9%)

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
           S PN+ H+  +   +  +L K +     ++L+  I+   FL+       L++ +      
Sbjct: 70  SIPNYKHSLQSSWTMIHILTKFKHLKTAQSLLEKIAYRDFLSTQSVLSALVRLHDDPD-- 127

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
                           +++  ++ ++ VYA T    EA++ F  ++  G  P+    TV+
Sbjct: 128 ----------------INSHVFSWLVIVYANTKMKQEAIQVFEHMMVNGFRPHLHACTVL 171

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           +  L      D   +V+  +  + ++     Y +L+         ++A +LL+EM     
Sbjct: 172 LNSLAKDRLTDMVWKVYKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCV 231

Query: 274 FP 275
           FP
Sbjct: 232 FP 233


>gi|242091740|ref|XP_002436360.1| hypothetical protein SORBIDRAFT_10g001070 [Sorghum bicolor]
 gi|241914583|gb|EER87727.1| hypothetical protein SORBIDRAFT_10g001070 [Sorghum bicolor]
          Length = 999

 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 101/235 (42%), Gaps = 17/235 (7%)

Query: 387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
           E A+H F  +  Q G   D   +  ++T L +HG +     +  ++ S G      T  L
Sbjct: 694 EDAYHLFMEMVDQ-GSNRDAVTVSILVTHLTKHGKLHSAISIYDRMISSGTSQSMQTFNL 752

Query: 447 IIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
           +I  +G   K D A++ F   + L  PI +     +Y+++L    K  R  +A  + + M
Sbjct: 753 MISVFGKGGKLDKAVEMFAAAQELGLPIDE----KMYTNMLSLYGKAGRHQEASLMFKRM 808

Query: 507 IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC----- 561
              GI P   +F+ ++  +A  G     +  F  ++  G  PD++ +  LI+AY      
Sbjct: 809 KEDGIRPGKISFNSMINAYATSGLCSEAKSTFHEMQDCGHAPDSFSYLALIRAYTEAKLY 868

Query: 562 -------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA 609
                  + + NS+  P       L  +  KEG+  EA  +  + ++ +  P LA
Sbjct: 869 MEAEEAIRMMLNSSTTPSCPHFSHLIFAFLKEGQIGEAQRIYNQMKEASVAPDLA 923



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 135/347 (38%), Gaps = 24/347 (6%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           +V    L+  Y+  G  + ++  ++  R+R  +     YN ++S   K   + + +  ++
Sbjct: 209 AVACGTLLCMYARWGRHKDMMLFYSAVRRRDLVPPVSVYNYMISSLQKQKLHGKVIHVWK 268

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           Q+ + GA+PN  TYTV+I   V    L+ A++VF  +   R       Y +L+       
Sbjct: 269 QMREAGALPNQFTYTVVISSFVKEDLLEKAMDVFGEMRQCRFVPEEATYSLLISASSRHG 328

Query: 257 RFDEAKSLLNEMRDDGKFPGR---AMRVALERMQEMGFIQGANEFLREM-----LPDKRI 308
           + ++A  L  EM+  G  P     A  +AL    E      A   L EM     +PD+ I
Sbjct: 329 KGEQALRLFEEMKAQGIVPSNYTCASLLALYYKNE--DYSKALSLLSEMENSKVIPDEVI 386

Query: 309 KNV--------RYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEV 360
             +          YE+     E             Y    +  L+       L+     +
Sbjct: 387 YGILIRIYGKLGLYEEAEQTFEKIEKAGLLSDEQTYVAMAQVHLNAGDYDRALEVLESMM 446

Query: 361 VSLLADAKFVWTTRLVCKVLRH-FKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH 419
           +  +  + F ++  L C V +    + E  +        Q G   DV+    +L +  R 
Sbjct: 447 MRNVKPSHFSYSAILRCYVAKEDIVAAEDTFRALS----QHGLP-DVFCCNDLLRLYMRL 501

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD 466
           GH+E    L+ K+R D  RL       ++ FY  S   + A K F D
Sbjct: 502 GHLEKARALVLKMREDDFRLDEDLSMTVMKFYCKSNMINDAEKIFKD 548



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 79/176 (44%), Gaps = 2/176 (1%)

Query: 98  FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVL 157
           F   ++T   L +  ++  +  +   L  ++ +   +  +    +L+  Y  + D    L
Sbjct: 310 FVPEEATYSLLISASSRHGKGEQALRLFEEMKAQGIVPSNYTCASLLALYYKNEDYSKAL 369

Query: 158 STWNEYRQRAKLLSTES-YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           S  +E  + +K++  E  Y I++ +Y K G   EA +TF ++   G + + +TY  M + 
Sbjct: 370 SLLSEM-ENSKVIPDEVIYGILIRIYGKLGLYEEAEQTFEKIEKAGLLSDEQTYVAMAQV 428

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
            +N G  D ALEV  ++ +  +K +   Y  ++  +V  E    A+     +   G
Sbjct: 429 HLNAGDYDRALEVLESMMMRNVKPSHFSYSAILRCYVAKEDIVAAEDTFRALSQHG 484



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 92/232 (39%), Gaps = 44/232 (18%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL 143
           SA S+  ALKS  +     S++  L + LA+     E K +   ++   F         L
Sbjct: 592 SAASV--ALKSLLDMPGGLSSVSLLISKLAREGSTDEAKFIYDQLTELGFKPDHTAIATL 649

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTES---YNIVMSVYAKTGKNFEAVETFRQVID 200
           +  Y     LE       E  + A  L  E    YN ++  + K GK  +A   F +++D
Sbjct: 650 VVQYGQGKQLEQA----QELFESASALFPEGANVYNAMVDAFCKCGKTEDAYHLFMEMVD 705

Query: 201 EGAIPNSRTYTVMIEHLV---------------------------NL--------GKLDS 225
           +G+  ++ T ++++ HL                            NL        GKLD 
Sbjct: 706 QGSNRDAVTVSILVTHLTKHGKLHSAISIYDRMISSGTSQSMQTFNLMISVFGKGGKLDK 765

Query: 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR 277
           A+E+F+A   + +    K Y  ++  +    R  EA  +   M++DG  PG+
Sbjct: 766 AVEMFAAAQELGLPIDEKMYTNMLSLYGKAGRHQEASLMFKRMKEDGIRPGK 817



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 83/207 (40%), Gaps = 1/207 (0%)

Query: 98  FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVL 157
           F    +  +A+     K  +  +   L  ++        +V    L+   +  G L   +
Sbjct: 673 FPEGANVYNAMVDAFCKCGKTEDAYHLFMEMVDQGSNRDAVTVSILVTHLTKHGKLHSAI 732

Query: 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217
           S ++         S +++N+++SV+ K GK  +AVE F    + G   + + YT M+   
Sbjct: 733 SIYDRMISSGTSQSMQTFNLMISVFGKGGKLDKAVEMFAAAQELGLPIDEKMYTNMLSLY 792

Query: 218 VNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR 277
              G+   A  +F  +    I+     +  ++  +       EAKS  +EM+D G  P  
Sbjct: 793 GKAGRHQEASLMFKRMKEDGIRPGKISFNSMINAYATSGLCSEAKSTFHEMQDCGHAPDS 852

Query: 278 AMRVALERM-QEMGFIQGANEFLREML 303
              +AL R   E      A E +R ML
Sbjct: 853 FSYLALIRAYTEAKLYMEAEEAIRMML 879



 Score = 46.2 bits (108), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 106/290 (36%), Gaps = 47/290 (16%)

Query: 358 PEVVSLLADAKFV--WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
           P     LA A FV   T R +C VLR  +    A  FF W+  Q  Y   V A   +L +
Sbjct: 124 PSADMRLAMASFVTRLTFREMCVVLREQRGWRQARDFFAWMKLQLCYEPSVVAYTILLRL 183

Query: 416 LARHGHVELVDRLIAKLRSDGMR---LPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
             + G ++L +    ++   G     +   T+  +   +G  K       A    R L  
Sbjct: 184 YGKVGKIKLAEETFLEMLQVGCEPDAVACGTLLCMYARWGRHKDMMLFYSAVR-RRDLVP 242

Query: 473 PISKFKLML-----------------------------LYSSLLRTLTKCKRDFDAINVL 503
           P+S +  M+                              Y+ ++ +  K      A++V 
Sbjct: 243 PVSVYNYMISSLQKQKLHGKVIHVWKQMREAGALPNQFTYTVVISSFVKEDLLEKAMDVF 302

Query: 504 EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK- 562
            EM     VP+  T+S L+   +  G  +   +LF  ++  G+ P  Y    L+  Y K 
Sbjct: 303 GEMRQCRFVPEEATYSLLISASSRHGKGEQALRLFEEMKAQGIVPSNYTCASLLALYYKN 362

Query: 563 -----------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEK 601
                       + NS ++PD     +L +   K G  +EA    E+ EK
Sbjct: 363 EDYSKALSLLSEMENSKVIPDEVIYGILIRIYGKLGLYEEAEQTFEKIEK 412



 Score = 40.8 bits (94), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 34/172 (19%), Positives = 69/172 (40%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T+  L T L K  + H   ++   + SS        F  ++  +   G L+  +  +   
Sbjct: 714 TVSILVTHLTKHGKLHSAISIYDRMISSGTSQSMQTFNLMISVFGKGGKLDKAVEMFAAA 773

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
           ++    +  + Y  ++S+Y K G++ EA   F+++ ++G  P   ++  MI      G  
Sbjct: 774 QELGLPIDEKMYTNMLSLYGKAGRHQEASLMFKRMKEDGIRPGKISFNSMINAYATSGLC 833

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             A   F  +        S  YL L+  +   + + EA+  +  M +    P
Sbjct: 834 SEAKSTFHEMQDCGHAPDSFSYLALIRAYTEAKLYMEAEEAIRMMLNSSTTP 885


>gi|449444598|ref|XP_004140061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27270-like [Cucumis sativus]
          Length = 1062

 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 103/522 (19%), Positives = 203/522 (38%), Gaps = 71/522 (13%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           +V ++L    +++ A  +   +K N  F   + T + L ++  K + + E+  L  D+  
Sbjct: 299 VVINSLVKEGHSEEAFKVFNEMK-NCGFIPEEVTYNLLISLSIKRENSDEVLRLYKDMRD 357

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
              +  +    +L+  +  +GD    LS ++E   +  ++    Y +++ +Y K G   +
Sbjct: 358 KDIVPSNYTCSSLLTLFYKNGDYSKALSLFSEMESKKVVVDEVIYGLLIRIYGKLGLYED 417

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A +TF ++   G + + ++Y  M +  +N    + AL++   +    I  +   Y++ ++
Sbjct: 418 AHKTFEEMEQLGLLTDEKSYLAMAQVHLNSRNFEKALDIIELMKSRNIWLSRFAYIVSLQ 477

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKN 310
            +V  E    A+S    +   G    R+    L    ++  +  A +F         I +
Sbjct: 478 CYVMKEDIRSAESTFQALSKTGLPDARSCIYILNLYLKLDLVNKAKDF---------IAH 528

Query: 311 VRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWL--DPKALANTL--DEWSPEVVSLLAD 366
           +R  +DG   DE+         ++   V  K  L  D + L   +  DE       L  D
Sbjct: 529 IR--KDGVVFDEEL-------YKLVLRVYCKEGLSEDAEILIELMKKDE-------LFVD 572

Query: 367 AKFVWTTRLVCKVLRHFKSPETAWHFFCWVAY-QPGY------------THDVYALEKML 413
            KF+ T   + K+    K+  T       V Y QP +              DV    K+L
Sbjct: 573 NKFMETFSFMFKLDGGEKNESTI------VGYDQPDHIALDMILRLYLANGDVSKRNKIL 626

Query: 414 TILARHGHVELVDRLIAKLRSDG----------------MRLPFSTIRLIIDFYGISKKA 457
             +   G V +V +L+A L  +G                 RL  + I  +I  YG  +K 
Sbjct: 627 KFIIGKGGVTVVSQLVANLIREGDSLKAGTLTKELLKLDCRLDDAIIASLISLYGKERKI 686

Query: 458 DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
           + A +        C         L++ S++    KC +  +A  + +E+I  G       
Sbjct: 687 NQAAEVLAAVANSCTST------LIFGSMIDAYIKCDKAEEASTLYKELIEKGYDLGAVA 740

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
            S ++    + G  ++ + +       G+E D   F   I+A
Sbjct: 741 VSRIVNTLTVGGKHRVAENVVRASLNCGLELDTVAFNTFIKA 782



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 60/134 (44%)

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
            +  ++  Y     L+  +  +N  R        ++Y  ++S Y K GK  EA   F+++
Sbjct: 810 TYNTMISVYGRGRKLDKAVEMFNAARSSGLSPDEKAYTNLISCYGKAGKTHEASLLFKEM 869

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
           ++EG  P   +Y +M+    N G  +    +  A+    I   S  Y  L+  +    ++
Sbjct: 870 LEEGVKPGMVSYNIMVNVYANAGLHEETENLLKAMEQDAIVPDSFTYFSLIRAYTQSCKY 929

Query: 259 DEAKSLLNEMRDDG 272
            EA+ ++N M++ G
Sbjct: 930 SEAEKIINSMQEKG 943



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 99/232 (42%), Gaps = 23/232 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D  A    +  +   G +    R+   + + G+     T   +I  YG  +K D A
Sbjct: 768 GLELDTVAFNTFIKAMLEGGKLHFASRIYEHMIALGIVPSIQTYNTMISVYGRGRKLDKA 827

Query: 461 LKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           ++ F+  R+    P  K      Y++L+    K  +  +A  + +EM+  G+ P + +++
Sbjct: 828 VEMFNAARSSGLSPDEK-----AYTNLISCYGKAGKTHEASLLFKEMLEEGVKPGMVSYN 882

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY---CKY---------LSNS 567
            ++  +A  G  +  + L   + Q+ + PD++ +  LI+AY   CKY         +   
Sbjct: 883 IMVNVYANAGLHEETENLLKAMEQDAIVPDSFTYFSLIRAYTQSCKYSEAEKIINSMQEK 942

Query: 568 NLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA-----LRGHI 614
            +    A  +LL  +L K G  ++A  V +  +     P +      +RG++
Sbjct: 943 GIPTTCAHYDLLLSALAKAGMIRKAERVYDELQTAGLSPDVTCNRTLMRGYL 994



 Score = 45.8 bits (107), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 49/107 (45%)

Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           L T ++N  +    + GK   A   +  +I  G +P+ +TY  MI       KLD A+E+
Sbjct: 771 LDTVAFNTFIKAMLEGGKLHFASRIYEHMIALGIVPSIQTYNTMISVYGRGRKLDKAVEM 830

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
           F+A     +    K Y  L+  +    +  EA  L  EM ++G  PG
Sbjct: 831 FNAARSSGLSPDEKAYTNLISCYGKAGKTHEASLLFKEMLEEGVKPG 877



 Score = 45.4 bits (106), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 47/105 (44%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           S ++YN ++SVY +  K  +AVE F      G  P+ + YT +I      GK   A  +F
Sbjct: 807 SIQTYNTMISVYGRGRKLDKAVEMFNAARSSGLSPDEKAYTNLISCYGKAGKTHEASLLF 866

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             +    +K     Y I+V  +      +E ++LL  M  D   P
Sbjct: 867 KEMLEEGVKPGMVSYNIMVNVYANAGLHEETENLLKAMEQDAIVP 911



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 59/129 (45%)

Query: 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206
           Y+  G  + +LS ++  + R  +     +N ++S   K G + +  E + Q+++ G   +
Sbjct: 234 YARWGHHKTMLSFYSAVKDRGIVPPIAVFNFMLSSLQKKGLHAKVKELWMQMVEIGVTFS 293

Query: 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
             TYTV+I  LV  G  + A +VF+ +           Y +L+   +  E  DE   L  
Sbjct: 294 DFTYTVVINSLVKEGHSEEAFKVFNEMKNCGFIPEEVTYNLLISLSIKRENSDEVLRLYK 353

Query: 267 EMRDDGKFP 275
           +MRD    P
Sbjct: 354 DMRDKDIVP 362



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 39/192 (20%), Positives = 78/192 (40%), Gaps = 6/192 (3%)

Query: 140  FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
            + NL+  Y  +G        + E  +        SYNI+++VYA  G + E     + + 
Sbjct: 846  YTNLISCYGKAGKTHEASLLFKEMLEEGVKPGMVSYNIMVNVYANAGLHEETENLLKAME 905

Query: 200  DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
             +  +P+S TY  +I       K   A ++ +++    I  T   Y +L+          
Sbjct: 906  QDAIVPDSFTYFSLIRAYTQSCKYSEAEKIINSMQEKGIPTTCAHYDLLLSALAKAGMIR 965

Query: 260  EAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLP---DKRIKN--VRY 313
            +A+ + +E++  G  P     R  +    + G+++   +F         D+ I +  V +
Sbjct: 966  KAERVYDELQTAGLSPDVTCNRTLMRGYLDYGYVREGIKFFESTCKYAGDRFIMSAAVHF 1025

Query: 314  YEDGSDDDEDEN 325
            Y+    +DE  N
Sbjct: 1026 YKAEGKEDEALN 1037


>gi|302763351|ref|XP_002965097.1| hypothetical protein SELMODRAFT_82937 [Selaginella moellendorffii]
 gi|300167330|gb|EFJ33935.1| hypothetical protein SELMODRAFT_82937 [Selaginella moellendorffii]
          Length = 540

 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 104/235 (44%), Gaps = 15/235 (6%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNP 96
           +I  +  A + N +  +   +N +   P I+ +      L  A   D A  +++ + S  
Sbjct: 148 VITGLCKAGKLNRACEVFQEMNRKGWKPDIIVYTSLVDGLSKASMMDEARKLLQEIVSR- 206

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLI---GDISSSKFLNVSVNFMNLMQWYSTSGDL 153
                + T  +  + L K+ R  E   L+   G + +++ L+       +   Y   G +
Sbjct: 207 GMKPTEVTYTSFISGLCKNGRVEEAGKLVREMGKMCAAEVLHC------IFGGYVLEGKI 260

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           E  L+  +E  ++   L    Y  ++       +N EA E F  ++ +G +P++RTY ++
Sbjct: 261 EEALTLKDEMVKKGVTLDVRCYTNLIHGLFYVRRNDEAQEMFEAMVRQGCVPDTRTYGMI 320

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           + H    GK+ +A +V   +    ++     Y  L++GF+GV R  EA ++ + M
Sbjct: 321 VSHFCKQGKMQAACKVVEIMDAAGLEANCHVYNSLMDGFLGVNRAREAINVYSTM 375



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 97/222 (43%), Gaps = 11/222 (4%)

Query: 70  FIVTHALRSAP--NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD 127
            IV+H  +      A   + IM+A     N     S +     V    +  +   T++  
Sbjct: 319 MIVSHFCKQGKMQAACKVVEIMDAAGLEANCHVYNSLMDGFLGVNRAREAINVYSTMLRK 378

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST-ESYNIVMSVYAKTG 186
           +     +  ++  + L +   T+ D  LVL    E R+R  ++ T  SY  ++    K G
Sbjct: 379 MVKPSIVTYNILMLGLCKLGQTA-DARLVL---REMRERDGIVPTIVSYRTLIHGLGKAG 434

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
           +  EA++ F +++D G +P+  + T +I+ L    ++D A ++   +P M I   +  Y 
Sbjct: 435 RADEAIDVFTEMVDNGVVPDCPSCTSLIQALAMADRMDEATQLLRDMPRMGITPDALAYN 494

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPG----RAMRVALE 284
            LV+   G  +   A  +L EM D+   P     RAM++  +
Sbjct: 495 ALVKVLCGGAKVGPAWDVLVEMMDNSCVPDGSTFRAMKLGFK 536



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 93/215 (43%), Gaps = 7/215 (3%)

Query: 89  MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS 148
           MEAL        +Q T   +   L + +   +  +    +S    L+V V++  L+   +
Sbjct: 30  MEAL----GIKKSQVTHGIILKALCERKEVDQALSYFHSVSPRSDLDV-VSYTTLIMGLA 84

Query: 149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSR 208
            SG +++    + E           +Y  +++   K  +  +A+  F +++     P+ R
Sbjct: 85  DSGRIDVACELFEEMSSSGSQCVV-AYTAIINALFKAHRPDQAIACFERMVARKCDPDLR 143

Query: 209 TYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           T+TV+I  L   GKL+ A EVF  +     K     Y  LV+G       DEA+ LL E+
Sbjct: 144 TFTVVITGLCKAGKLNRACEVFQEMNRKGWKPDIIVYTSLVDGLSKASMMDEARKLLQEI 203

Query: 269 RDDGKFPGRAMRVA-LERMQEMGFIQGANEFLREM 302
              G  P      + +  + + G ++ A + +REM
Sbjct: 204 VSRGMKPTEVTYTSFISGLCKNGRVEEAGKLVREM 238



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 66/145 (45%), Gaps = 7/145 (4%)

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
           L ++G VE   +L+   R  G       +  I   Y +  K + AL    D+    G   
Sbjct: 222 LCKNGRVEEAGKLV---REMGKMCAAEVLHCIFGGYVLEGKIEEAL-TLKDEMVKKGVTL 277

Query: 476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ 535
             +    Y++L+  L   +R+ +A  + E M+  G VPD +T+  ++ HF  QG  +   
Sbjct: 278 DVRC---YTNLIHGLFYVRRNDEAQEMFEAMVRQGCVPDTRTYGMIVSHFCKQGKMQAAC 334

Query: 536 KLFSMVRQNGVEPDAYMFKVLIQAY 560
           K+  ++   G+E + +++  L+  +
Sbjct: 335 KVVEIMDAAGLEANCHVYNSLMDGF 359



 Score = 46.2 bits (108), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 41/79 (51%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y +L+  L K  R  +AI+V  EM+ +G+VPD  + + L+   A+        +L   + 
Sbjct: 423 YRTLIHGLGKAGRADEAIDVFTEMVDNGVVPDCPSCTSLIQALAMADRMDEATQLLRDMP 482

Query: 543 QNGVEPDAYMFKVLIQAYC 561
           + G+ PDA  +  L++  C
Sbjct: 483 RMGITPDALAYNALVKVLC 501


>gi|255661038|gb|ACU25688.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 375

 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 95/214 (44%), Gaps = 21/214 (9%)

Query: 396 VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI--RLIIDFYGI 453
           +A   G   D ++   M+  L +   ++    +++ +  +G + P + +   LI  F G 
Sbjct: 119 IAEGKGGVLDAFSYSAMINGLCKEAKLDEAVSVLSGMVKNGCK-PNTHVYNALINGFVGA 177

Query: 454 SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP 513
           SK  DA  + F +  T C P      ++ Y++L+  L K +R  +A ++++EM+  G  P
Sbjct: 178 SKFEDAT-RVFREMGTHCSPN-----IVTYNTLINGLCKGERFGEAYDLVKEMLEKGWKP 231

Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY---------- 563
            V T+S LM    L     +   L++ V   G +PD  M  +LI   C            
Sbjct: 232 GVSTYSLLMKGLCLGHKLDMAINLWNQVIAKGFKPDVQMHNILIHGLCSVGKTQLALSLY 291

Query: 564 --LSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
             ++  N  P+  T   L +  +K+G  + A A+
Sbjct: 292 FNMNXWNCAPNLVTYNTLMEGFYKDGDLRNALAI 325



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 61/129 (47%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           F  +M+    +G+++ V+S W    +      + +Y I++    K G   +++       
Sbjct: 62  FNIMMRGLFDNGEVDQVISIWELMIENGFGEDSITYGILVDGLCKNGYANKSLHVLEIAE 121

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
            +G + ++ +Y+ MI  L    KLD A+ V S +     K  +  Y  L+ GFVG  +F+
Sbjct: 122 GKGGVLDAFSYSAMINGLCKEAKLDEAVSVLSGMVKNGCKPNTHVYNALINGFVGASKFE 181

Query: 260 EAKSLLNEM 268
           +A  +  EM
Sbjct: 182 DATRVFREM 190


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 84/169 (49%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T ++  + L K  R+ + + +   +++   +   V++  L+  Y+T G    + + ++  
Sbjct: 371 TFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSM 430

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
             +  + +   +NI++S +AK G   EA+  F ++  +G  P+  TY+ +I     +G+L
Sbjct: 431 ADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRL 490

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
             A+E FS +  + ++  +  Y  L+ GF       +AK L++EM   G
Sbjct: 491 ADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKG 539



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 94/480 (19%), Positives = 194/480 (40%), Gaps = 37/480 (7%)

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
           +FM+ +  +  S D E +            L+S   Y+I++  YA  G+  +    F  +
Sbjct: 374 SFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVS---YSILLHGYATEGRFADMNNLFHSM 430

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
            D+G + N   + ++I      G +D A+ VF+ +    ++     Y  L+  F  + R 
Sbjct: 431 ADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRL 490

Query: 259 DEAKSLLNEMRDDGKFPGRAMRVALERMQEM-GFIQGANEFLREMLPDKRIK--NVRYYE 315
            +A    ++M   G  P   +  +L     M G +  A E + EM+  K I   N+ ++ 
Sbjct: 491 ADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMM-SKGIPRPNIVFFS 549

Query: 316 D--GSDDDE----DENDDNNSGVRIA---YGVQLKPWLDPKALANTLDEWSP---EVVSL 363
               S  +E    D +D  N  + I      V     +D   L   +++       +VS+
Sbjct: 550 SIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSV 609

Query: 364 LADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVE 423
             +   V    LV    +  K  +    F   +  +   T   Y++  +L  L   G   
Sbjct: 610 GIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSI--VLDGLFHAGRTS 667

Query: 424 LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLY 483
              ++  ++   G  +   T ++++     +   D A+  FH    L     KF + +L 
Sbjct: 668 AAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHK---LGAMDCKFDITIL- 723

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           ++++  L K +R  +A ++   +  SG+VP+V T+  ++++   +G  +    +FS + +
Sbjct: 724 NTVINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEK 783

Query: 544 NGVEPDAYMFKVLIQA------------YCKYLSNSNLMPDAATKELLKKSLWKEGRRKE 591
           +G  P + +   +I+             Y   +  + +  +A+T  LL      +G+ +E
Sbjct: 784 SGCAPSSRLLNDIIRMLLQKGDIVKAGYYMSKVDGTIISLEASTTSLLMSLFSSKGKHRE 843



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 12/121 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y+S++  L K +    A  VL +M+  G+ PD  T++ +++ ++  G  K   K+F 
Sbjct: 299 VVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFR 358

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEG 587
            +   G+ P    F   + + CK            Y++    MPD  +  +L      EG
Sbjct: 359 KMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEG 418

Query: 588 R 588
           R
Sbjct: 419 R 419



 Score = 46.6 bits (109), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 14/126 (11%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD-EKIVQKLF 538
           ++ +SS++ +L    R  DA +V   +I  G  P + TF+ L+  + L G  EK    L 
Sbjct: 545 IVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLD 604

Query: 539 SMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKE 586
           +MV   G+EPD   +  L+  YCK             + +  + P   T  ++   L+  
Sbjct: 605 AMV-SVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHA 663

Query: 587 GRRKEA 592
           GR   A
Sbjct: 664 GRTSAA 669



 Score = 46.6 bits (109), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 14/140 (10%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSG--IVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           Y++++++L    R  +A+++++ M   G    PDV +F+ +++ F  QG+      L + 
Sbjct: 230 YNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLINE 289

Query: 541 VRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGR 588
           + Q GVEPD   +  ++ A CK             + +  + PD  T   +       G 
Sbjct: 290 MVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGH 349

Query: 589 RKEAAAVEERCEKINDVPSL 608
            KE+A +  +      +P +
Sbjct: 350 WKESAKMFRKMTSKGLIPGI 369



 Score = 46.2 bits (108), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 72/179 (40%), Gaps = 6/179 (3%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+  Y  SG ++  L  + E   +    +T +Y+IV+      G+   A + F +
Sbjct: 616 VTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHE 675

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +ID G   +  TY ++++ L      D A+ +F  L  M  K        ++     V R
Sbjct: 676 MIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRR 735

Query: 258 FDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREM-----LPDKRIKN 310
            +EA  L   +   G  P      V +  + + G ++ A+     M      P  R+ N
Sbjct: 736 REEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLN 794



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 18/155 (11%)

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A N++ EM+  G+ PDV T++ ++            + +   +   GVEPD   +  +I 
Sbjct: 283 ACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIH 342

Query: 559 AY-C-----------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
            Y C           + +++  L+P   T      SL K GR K+A  + +       +P
Sbjct: 343 GYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMP 402

Query: 607 -----SLALRGHIWAVSSADLTRV-HSIYRNSITS 635
                S+ L G+      AD+  + HS+    I +
Sbjct: 403 DLVSYSILLHGYATEGRFADMNNLFHSMADKGIVA 437



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 27/139 (19%), Positives = 59/139 (42%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
            + +  ++  YS SG  +     + +   +  +    ++N  MS   K G++ +A E F+
Sbjct: 334 GLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQ 393

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
            +  +G +P+  +Y++++      G+      +F ++    I      + IL+       
Sbjct: 394 YMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRG 453

Query: 257 RFDEAKSLLNEMRDDGKFP 275
             DEA  +  EM+  G  P
Sbjct: 454 MMDEAMLVFTEMQGQGVRP 472



 Score = 43.5 bits (101), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 13/124 (10%)

Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           +A+ V  EM   G+ PDV T+S L+  F   G      + FS +   G+EP+  ++  LI
Sbjct: 457 EAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLI 516

Query: 558 QAYCKY-------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND 604
             +C +             +S     P+      +  SL  EGR  +A  V      I D
Sbjct: 517 HGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGD 576

Query: 605 VPSL 608
            P++
Sbjct: 577 RPTI 580


>gi|115450907|ref|NP_001049054.1| Os03g0162900 [Oryza sativa Japonica Group]
 gi|108706330|gb|ABF94125.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547525|dbj|BAF10968.1| Os03g0162900 [Oryza sativa Japonica Group]
 gi|222624238|gb|EEE58370.1| hypothetical protein OsJ_09514 [Oryza sativa Japonica Group]
          Length = 823

 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 103/482 (21%), Positives = 179/482 (37%), Gaps = 104/482 (21%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE---LVL 157
           + ST   L  V  K  R       +GD+     L   +    ++Q +  +G+ E   L  
Sbjct: 175 DNSTYGTLIDVHCKGGRERMALLWLGDMIKRGLLPDEITMSIVLQVHKKAGEYEKAELFF 234

Query: 158 STWN-EYRQRAK---LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
             W+ E   + K     S  +YN ++  Y K G+  +  +TF Q++ EG  PN  T+  M
Sbjct: 235 KRWSLESDVKMKGHPCYSLYTYNTLIDTYGKAGQLEKVSDTFNQMLREGVSPNVVTFNTM 294

Query: 214 IE------HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNE 267
           I        +  +  L   +E F  LP       ++ Y IL+             SL  E
Sbjct: 295 IHVWGKHRRMEQVASLMRTMEEFQCLP------DTRTYNILI-------------SLYRE 335

Query: 268 MRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDD 327
           + D                     I  A  + R+M  +  + +V                
Sbjct: 336 IND---------------------IDVAEYYFRKMKAENLLPDVV--------------- 359

Query: 328 NNSGVRIAYGVQLKPWL-DPKALAN-------TLDEWSPEVVS-LLADAKFVWTTRLVCK 378
             S   + YG  +K  + + +AL          +DE++   V+ +  DA  +        
Sbjct: 360 --SCRTLLYGYSIKGMVTEAQALLKEMYERNMVIDEYTQSAVTRMYVDAGML-------- 409

Query: 379 VLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR 438
                   E AW   CW   +  Y  +       +      GH+ L ++         M 
Sbjct: 410 --------EQAW---CWFE-KFNYQLNSECFSANIDAFGERGHILLAEKAFMCCIKRKM- 456

Query: 439 LPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD 498
           L      ++I  YG+ +K D A +   D     G +  +   L YSSL+  ++  K    
Sbjct: 457 LSTCVCNVMIKAYGLVEKLDEACE-IADGMERYGILPDY---LTYSSLIHLMSTAKLPEK 512

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A+  L +M  + ++ D   +S ++  FA  G+  +V  LF  +  +G++ D Y++ +LI 
Sbjct: 513 ALYYLRKMQAAKLLIDCVPYSVVISCFAKNGNLHMVDCLFREMITSGIQADTYVYSILID 572

Query: 559 AY 560
           AY
Sbjct: 573 AY 574


>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
 gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
          Length = 715

 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 103/444 (23%), Positives = 179/444 (40%), Gaps = 79/444 (17%)

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE-------AVETFRQ 197
           Q  S S  LE  L+ ++E   RA+  S  ++N V++V A    +         AV  F  
Sbjct: 22  QHRSGSLGLEDALNLFDELLPRARSASVHAFNRVLTVVAHGDSSSSQRHGAALAVSLFNT 81

Query: 198 VIDEGA---IPNSRTYTVMIEHLVNLGKLDSALEVFS-----ALPLM-----RIKRTSKQ 244
           +   G      ++ T+ ++I    N+G LD ALE  S     A+ +M             
Sbjct: 82  MAQVGVNKLATDACTFGILIRCFCNVGLLDFALEEESRGSRAAVHMMADDGYNCPPNVLS 141

Query: 245 YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM--RVALERMQEMGFIQGANEFLREM 302
           Y +++ G       D+A +L +EM   G FP   +     ++ + +   +  A   L++M
Sbjct: 142 YNMVINGLFKEGEVDKAYTLFHEMLGQG-FPPNIVTYNSVIDGLCKAQAMDKAEAVLQQM 200

Query: 303 LPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVV- 361
               +++                            V+L   +    L        P+VV 
Sbjct: 201 FDKGQLEE--------------------------AVRLLKKMSGGGL-------QPDVVT 227

Query: 362 -SLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHG 420
            SLL D          CK+ R     E    F   V  + G   D Y    +L   A  G
Sbjct: 228 YSLLID--------YYCKIGR---CTEARNIFDSMV--RRGQNPDAYTYRTLLHGYATKG 274

Query: 421 HVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL- 479
            +  +  L+A +  DG+ L      ++I  Y  ++  D A+ AF + R        F   
Sbjct: 275 ALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQ-----KGFSPN 329

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL-F 538
           ++ Y++++  L K  R  DA++   +M+  G+ PD+ TF+ L++     G+ K V+KL F
Sbjct: 330 VVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSF 389

Query: 539 SMVRQNGVEPDAYMFKVLIQAYCK 562
            M+ + G+ P+A     ++ + CK
Sbjct: 390 EMINR-GIHPNAIFLNTIMDSLCK 412



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 86/203 (42%), Gaps = 1/203 (0%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
            FS N  T   +  +L K+ R  +  +    + S       + F +L+    T G+ + V
Sbjct: 325 GFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKV 384

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
                E   R    +    N +M    K G+  EA + F Q+I  G  P+  +YT++I+ 
Sbjct: 385 EKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDG 444

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM-RDDGKFP 275
               GK+D ++++   +  + ++  +  Y  L+ G+    R D+A +L  EM   D K  
Sbjct: 445 YCLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPN 504

Query: 276 GRAMRVALERMQEMGFIQGANEF 298
                + L  +   G +  A EF
Sbjct: 505 AITYNIILHGLFHAGRVVAAREF 527



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 87/402 (21%), Positives = 164/402 (40%), Gaps = 36/402 (8%)

Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL 264
           PN  +Y ++I  L   G++D A  +F  +           Y  +++G    +  D+A+++
Sbjct: 137 PNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAV 196

Query: 265 LNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDE 324
           L +M D G+    A+R+ L++M   G       +   +L D   K  R  E  +  D   
Sbjct: 197 LQQMFDKGQLE-EAVRL-LKKMSGGGLQPDVVTY--SLLIDYYCKIGRCTEARNIFDSMV 252

Query: 325 NDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFK 384
               N      Y   L  +    AL +  D     +++L+          +   ++R + 
Sbjct: 253 RRGQNPDA-YTYRTLLHGYATKGALVDMHD-----LLALMIQDGIPLEDHVFNILIRAYA 306

Query: 385 SPET---AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPF 441
             ET   A   F  +  Q G++ +V     ++ IL + G VE      +++ S+G+    
Sbjct: 307 KNETLDKAMTAFIEMR-QKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDI 365

Query: 442 STI-RLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAI 500
            T   LI     I +       +F        P + F      ++++ +L K  R  +A 
Sbjct: 366 ITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIF-----LNTIMDSLCKEGRVLEAH 420

Query: 501 NVLEEMIFSGIVPDVQTFSGLMYHFALQG--DEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           +  +++I  G+ PDV +++ L+  + L G  DE I  KL   +   G+ PD   +  L+ 
Sbjct: 421 DFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESI--KLLGRMVSIGLRPDNVTYSALLN 478

Query: 559 AYCK------------YLSNSNLMPDAATKELLKKSLWKEGR 588
            YCK             + + ++ P+A T  ++   L+  GR
Sbjct: 479 GYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGR 520



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 84/190 (44%), Gaps = 1/190 (0%)

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L+G + S      +V +  L+  Y  +G ++  L+ + E   +    +  +YNI++    
Sbjct: 457 LLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLF 516

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
             G+   A E + +++D G      TY +++  L     +D AL +F  L     +   +
Sbjct: 517 HAGRVVAAREFYMKIVDSGIQLGINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVR 576

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
            + I++ G + V R  +AKSL + +   G  P   +  + ++   E G ++ ++E    M
Sbjct: 577 TFNIMIVGLLKVGRIGDAKSLFSAILPSGLVPDAIIYGLMIQSHIEEGLLEESDELFLSM 636

Query: 303 LPDKRIKNVR 312
             +    N R
Sbjct: 637 EKNGCTANSR 646



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 28/216 (12%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK-----KADA 459
           +V +   ++  L + G V+    L  ++   G      T   +ID  G+ K     KA+A
Sbjct: 138 NVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVID--GLCKAQAMDKAEA 195

Query: 460 ALKAFHDDRTLCGPISKFKLM---------LLYSSLLRTLTKCKRDFDAINVLEEMIFSG 510
            L+   D   L   +   K M         + YS L+    K  R  +A N+ + M+  G
Sbjct: 196 VLQQMFDKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRG 255

Query: 511 IVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK-------- 562
             PD  T+  L++ +A +G    +  L +++ Q+G+  + ++F +LI+AY K        
Sbjct: 256 QNPDAYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAM 315

Query: 563 ----YLSNSNLMPDAATKELLKKSLWKEGRRKEAAA 594
                +      P+  T   +   L K GR ++A +
Sbjct: 316 TAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVS 351



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 112/288 (38%), Gaps = 57/288 (19%)

Query: 39  RAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHAL--------RSAPNADSALSIME 90
           + QL +++RL  + +             L P +VT++L             A +    M 
Sbjct: 203 KGQLEEAVRLLKKMSGGG----------LQPDVVTYSLLIDYYCKIGRCTEARNIFDSMV 252

Query: 91  ALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS 150
               NP+    ++ LH  AT  A     H+L  L+  I     L   V F  L++ Y+ +
Sbjct: 253 RRGQNPDAYTYRTLLHGYATKGALVDM-HDLLALM--IQDGIPLEDHV-FNILIRAYAKN 308

Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
             L+  ++ + E RQ+    +  +Y  V+ +  K G+  +AV  F Q++ EG  P+  T+
Sbjct: 309 ETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITF 368

Query: 211 TVMIEHLVNLGK--------------------------LDS---------ALEVFSALPL 235
           T +I  L  +G+                          +DS         A + F  +  
Sbjct: 369 TSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIH 428

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
           + +K     Y IL++G+    + DE+  LL  M   G  P      AL
Sbjct: 429 VGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSAL 476



 Score = 45.8 bits (107), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 84/441 (19%), Positives = 171/441 (38%), Gaps = 72/441 (16%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  L+  Y+T G L  +        Q    L    +NI++  YAK     +A+  F ++ 
Sbjct: 263 YRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMR 322

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
            +G  PN  TYT +I+ L   G+++ A+  FS +    +      +  L+ G   +  + 
Sbjct: 323 QKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWK 382

Query: 260 EAKSLLNEMRDDGKFPGRA-MRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGS 318
           + + L  EM + G  P    +   ++ + + G +  A++F  +++               
Sbjct: 383 KVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQII--------------- 427

Query: 319 DDDEDENDDNNSGVR---IAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL 375
                     + GV+   ++Y + +  +         LD    E + LL         R+
Sbjct: 428 ----------HVGVKPDVVSYTILIDGY--------CLDGKMDESIKLLG--------RM 461

Query: 376 VCKVLRHFKSPETAWHFFCWVAY-QPGYTHDVYALEK----------------MLTILAR 418
           V   LR    P+   +      Y + G   D  AL +                +L  L  
Sbjct: 462 VSIGLR----PDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFH 517

Query: 419 HGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFK 478
            G V        K+   G++L  +T  +++     +   D AL+ F   R+      +F+
Sbjct: 518 AGRVVAAREFYMKIVDSGIQLGINTYNIVLGGLCENSFVDEALRMFQGLRS-----KEFQ 572

Query: 479 LML-LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL 537
           L +  ++ ++  L K  R  DA ++   ++ SG+VPD   +  ++     +G  +   +L
Sbjct: 573 LEVRTFNIMIVGLLKVGRIGDAKSLFSAILPSGLVPDAIIYGLMIQSHIEEGLLEESDEL 632

Query: 538 FSMVRQNGVEPDAYMFKVLIQ 558
           F  + +NG   ++     +++
Sbjct: 633 FLSMEKNGCTANSRTLNAIVR 653


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 14/129 (10%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD-EKIVQKLFSMV 541
           Y++L+R L   +R   A+ +L +M  SG+ PDV T+  L+       D +K V+ L  M 
Sbjct: 116 YTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMC 175

Query: 542 RQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRR 589
            ++G+EP+  ++  L+Q YCK             +S   + PD      L  SL +EG+ 
Sbjct: 176 -ESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKV 234

Query: 590 KEAAAVEER 598
           K+A  V ++
Sbjct: 235 KKATQVMDK 243



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y +L+R L        A+ +L EM  SGI P+V  +S L+  +   G  + V K+F  + 
Sbjct: 151 YGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMS 210

Query: 543 QNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRK 590
             G+EPD  M+  LI + C+             +    L P+  T  +L  S+ KEG  K
Sbjct: 211 GRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVK 270

Query: 591 EA 592
           EA
Sbjct: 271 EA 272



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 112/554 (20%), Positives = 218/554 (39%), Gaps = 64/554 (11%)

Query: 27  APFTNKLALYLRR------AQLIDSIRLAVRSNSSNSLSSL--LNDRLLDPFIVTHALRS 78
           APF   LA+ LRR      A+L   +RL     S   LSSL  + D +    ++    R 
Sbjct: 35  APF---LAVLLRRGRAEASARLNRLLRLVPLPESPALLSSLPSVRDAVSYNTVLAALCRQ 91

Query: 79  APNADSALSIMEAL--KSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNV 136
               D+AL ++  +  ++ P      + + AL       +R  +   L+ D+ +S     
Sbjct: 92  GGCLDAALFLLRVMAHETRPTAVSYTTLMRALCA----ERRTGQAVGLLRDMQASGVRPD 147

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
            V +  L++    + D++  +    E  +     +   Y+ ++  Y K G+     + F 
Sbjct: 148 VVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFE 207

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           ++   G  P+   YT +I+ L   GK+  A +V   +    ++     Y +L+       
Sbjct: 208 EMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEG 267

Query: 257 RFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
              EA SL N M + G        VAL+ +     I G +  L EM  D+ +  +     
Sbjct: 268 SVKEAMSLRNNMLEKG--------VALDAVTYNTLITGLSGVL-EM--DEAMGLLEEMIH 316

Query: 317 GSDDDEDENDDNNSGV-------RIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF 369
           G    E      NS +       R+    Q++  +     A  L  ++  +  LL   K 
Sbjct: 317 GETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKV 376

Query: 370 VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
                L+ ++      P++             +T+ +     ++    +   V+  + L+
Sbjct: 377 KKAMELMDEMASSGLEPDS-------------FTYSI-----LINGFCKMWQVDRAESLL 418

Query: 430 AKLRSDGMR---LPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSL 486
           +K+R DG+    + +  +   +   G+ ++A       H +  L         ++ YS++
Sbjct: 419 SKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEMHKNCKL--------DVVAYSTM 470

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           +    + +    A   L+ M+  G++PD  T+S L+  FA  GD    +++   +  +G 
Sbjct: 471 IHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLKQMTASGF 530

Query: 547 EPDAYMFKVLIQAY 560
            PD  +F  LI+ Y
Sbjct: 531 VPDVAVFDSLIKGY 544



 Score = 40.4 bits (93), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           LL   LLR + K K+   A+ +++EM  SG+ PD  T+S L+  F         + L S 
Sbjct: 365 LLIGGLLR-VHKVKK---AMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSK 420

Query: 541 VRQNGVEPDAYMFKVLIQAYCK 562
           +R++G+EP+   +  L+ A C+
Sbjct: 421 MRRDGIEPELVHYIPLLAALCE 442


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 97/229 (42%), Gaps = 5/229 (2%)

Query: 87  SIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQW 146
           S+ME+ + +P+      T  AL   L K  R  E   L  ++     +   V F  L+  
Sbjct: 285 SVMESERISPDVF----TYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDG 340

Query: 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206
               G ++L L  +   + R       +YN +++   + G   EA +   ++I  G  P+
Sbjct: 341 QCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPD 400

Query: 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
             T+T +++     G +DSALE+   +    I+     +  L+ G     R  +A+ +L 
Sbjct: 401 KITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLK 460

Query: 267 EMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
           +M   G  P      + ++   + G ++   + L+EM  D R+  V  Y
Sbjct: 461 DMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTY 509



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 97/240 (40%), Gaps = 31/240 (12%)

Query: 378 KVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD-- 435
           +V++  + P   W F+  V    GY  +VY    ++     HG  ++ D + A++  D  
Sbjct: 199 RVMKLNQQPGHCWEFYLEVL-DYGYPPNVYLFNILM-----HGFCKIGDVMNARMVFDEI 252

Query: 436 ---GMRLPFSTIRLIIDFYGISKKADAA--LKAFHDDRTLCGPISKFKLMLLYSSLLRTL 490
              G+R    +   +I  Y  SK  +    LK+  +   +   +        YS+L+  L
Sbjct: 253 SRRGLRPSVVSFNTLISGYCRSKNVEEGFVLKSVMESERISPDV------FTYSALINGL 306

Query: 491 TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA 550
            K  R  +A  + +EM   G+VP+  TF+ L+      G   +  + F +++  G+ PD 
Sbjct: 307 CKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDL 366

Query: 551 YMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
             +  LI   C+             +  +   PD  T   L     K+G    A  +++R
Sbjct: 367 ITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDR 426



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 82/403 (20%), Positives = 136/403 (33%), Gaps = 85/403 (21%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           +NI+M  + K G    A   F ++   G  P+  ++  +I        ++    + S + 
Sbjct: 229 FNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVLKSVME 288

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQG 294
             RI      Y  L+ G     R +EA  L +E                  M EMG +  
Sbjct: 289 SERISPDVFTYSALINGLCKESRVEEANGLFDE------------------MCEMGLVPN 330

Query: 295 ANEFLREMLPDKRIKN------VRYYEDGSDDDEDENDDNNSGVR---IAYGVQLKPWLD 345
              F    L D + K+      +R +E   D           G+R   I Y   +     
Sbjct: 331 GVTF--TTLIDGQCKHGKIDLALRNFEIMKD----------RGIRPDLITYNALINGLCR 378

Query: 346 PKALANTLDEWSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYT 403
              L       +  + +     K  +TT +   CK      + E           + G  
Sbjct: 379 DGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMV-----EEGIE 433

Query: 404 HDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKA 463
            D  A   +++ L R G V   +R++  + S G +    T  ++ID +   KK D  + A
Sbjct: 434 LDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCF--CKKGDVKMGA 491

Query: 464 FHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
                                                 +L+EM   G VP V T++ LM 
Sbjct: 492 -------------------------------------KLLKEMQRDGRVPGVVTYNALMN 514

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSN 566
            F  QG  K  + L   +    V P+   F +L+  +CK+ S+
Sbjct: 515 GFCKQGQMKNAKMLLHAMLNMEVVPNDITFNILLDGHCKHGSS 557



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 13/109 (11%)

Query: 505 EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK-- 562
           E++  G  P+V  F+ LM+ F   GD    + +F  + + G+ P    F  LI  YC+  
Sbjct: 216 EVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSK 275

Query: 563 ----------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV-EERCE 600
                      + +  + PD  T   L   L KE R +EA  + +E CE
Sbjct: 276 NVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCE 324



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 66/174 (37%), Gaps = 37/174 (21%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF---------- 189
           F  LM  +   GD+      ++E  +R    S  S+N ++S Y ++ KN           
Sbjct: 229 FNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRS-KNVEEGFVLKSVM 287

Query: 190 --------------------------EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
                                     EA   F ++ + G +PN  T+T +I+     GK+
Sbjct: 288 ESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKI 347

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR 277
           D AL  F  +    I+     Y  L+ G        EA+ LLNEM  +G  P +
Sbjct: 348 DLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDK 401


>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1010

 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 109/454 (24%), Positives = 168/454 (37%), Gaps = 46/454 (10%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           A    S M+  +  P        LH  A +          K +IG  + +K    + N M
Sbjct: 44  AIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIG--AGAKPTVFTYNIM 101

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
             +      GD+E     + E + R  +  T +YN ++  + K G+  + V  F ++ D 
Sbjct: 102 --IDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDM 159

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
              P+  TY  +I      GKL   LE F  +    +K     Y  LV+ F       +A
Sbjct: 160 CCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQA 219

Query: 262 KSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYE---DG 317
                +MR  G  P      +L +   ++G +  A     EML      NV  Y    DG
Sbjct: 220 IKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDG 279

Query: 318 SDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVC 377
                                 L  W +P    + LD    E+V L      V    L+ 
Sbjct: 280 ----------------------LCGWENPTEGLHLLD----EMVELDIKVTVVTFCVLID 313

Query: 378 KVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM 437
            + ++ K    A  +F  ++   G   +      M+  L +   VE    L  ++   G+
Sbjct: 314 GLCKN-KLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGL 372

Query: 438 RLPFSTIRLIIDFYGISKKADA--ALKAFHDDRTLCGPISKFKLMLL-YSSLLRTLTKCK 494
               +    ++D  G  K+ +   AL A  D     G     KL LL Y+SL+  L+ C 
Sbjct: 373 VPDRTAYTSLMD--GNFKQGNVLEAL-ALRDKMVETG----MKLDLLAYTSLVWGLSHCN 425

Query: 495 RDFDAINVLEEMIFSGIVPD-VQTFSGLMYHFAL 527
           +   A + LEEMI  GI PD V   S L  H+ L
Sbjct: 426 QLQKARSFLEEMIGEGIHPDEVLCISVLKKHYEL 459



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 4/157 (2%)

Query: 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465
           V+    M+  + + G VE    L  +++  G+     T   +ID +G   + D  +  F 
Sbjct: 95  VFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFE 154

Query: 466 DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF 525
           + + +C        ++ Y++L+    K  +    +    EM  +G+ P+V ++S L+  F
Sbjct: 155 EMKDMCCEPD----VITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAF 210

Query: 526 ALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
             +G  +   K +  +R+ G+ P+ Y +  LI AYCK
Sbjct: 211 CKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCK 247



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 1/165 (0%)

Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
           G +E  +  +++ ++      T S N ++  +AK GK       F+ +I  GA P   TY
Sbjct: 39  GMVEEAIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGAKPTVFTY 98

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
            +MI+ +   G +++A  +F  +    +   +  Y  +++GF  V R D+      EM+D
Sbjct: 99  NIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKD 158

Query: 271 DGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
               P      AL     + G +    EF REM  +    NV  Y
Sbjct: 159 MCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSY 203



 Score = 45.8 bits (107), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 12/106 (11%)

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A  + EEM F G++PD  T++ ++  F   G        F  ++    EPD   +  LI 
Sbjct: 114 ARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALIN 173

Query: 559 AYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
            +CK+            +  + L P+  +   L  +  KEG  ++A
Sbjct: 174 CFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQA 219



 Score = 40.0 bits (92), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 2/115 (1%)

Query: 186 GKNFEAVET-FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQ 244
           G   EA  T F Q+  +G +P+   YT +++     G +  AL +   +    +K     
Sbjct: 354 GNQVEAATTLFEQMAQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMVETGMKLDLLA 413

Query: 245 YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA-LERMQEMGFIQGANEF 298
           Y  LV G     +  +A+S L EM  +G  P   + ++ L++  E+G I  A E 
Sbjct: 414 YTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCINEAVEL 468


>gi|218191848|gb|EEC74275.1| hypothetical protein OsI_09511 [Oryza sativa Indica Group]
          Length = 933

 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 120/570 (21%), Positives = 221/570 (38%), Gaps = 58/570 (10%)

Query: 69  PFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDI 128
           PFIV +        + A  + E +  N     +  TL AL   L +  R  E   L  ++
Sbjct: 244 PFIVYYC--RTKGVEEAFDLYEGMVRN-GVLLDVVTLSALVAGLCRDGRFSEAYALFREM 300

Query: 129 SSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN 188
                +   V +  L+   + +G  + +LS   E   R  ++   +Y  +M    K GK 
Sbjct: 301 DKVGAVPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKT 360

Query: 189 FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
            E  +T R  + +    N  TYTV+I+ L     +D A +V   +    I      +  +
Sbjct: 361 DEVKDTLRFALSDNLSLNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSV 420

Query: 249 VEGFVGVERFDEAKSLLNEMRD--------------DGKFPGRAMRVALERMQEMGFIQG 294
           + GFV     D+A      M++              DG F  +    ALE   +M   +G
Sbjct: 421 INGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDM-LCEG 479

Query: 295 ANEFLREMLPDKRIKNVRYYEDGSDDDEDE--NDDNNSGVRIAYGVQLKPWLDPKALAN- 351
               + + + D  +  +R  ++G  ++      D + SG+ + + V     +D    A  
Sbjct: 480 VE--VNKFIVDSLVNGLR--QNGKIEEAMALFKDASGSGLSLDH-VNYTTLIDGLFKAGD 534

Query: 352 --TLDEWSPEVV--SLLADAKFVWTTRLVC-KVLRHFKSPETAWHFFCWVAYQPGYTHDV 406
             T  ++  E++  ++L DA  V+   + C  +L  FK  ++       +  +P    D 
Sbjct: 535 MPTAFKFGQELMDRNMLPDA-VVYNVFINCLCILGKFKEAKSILTEMRNMGLKP----DQ 589

Query: 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR-LIIDFYGISKKADAALKAFH 465
                M+    R G      +L+ +++   ++    T   L+   +G      A  K   
Sbjct: 590 STYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKA--KYLL 647

Query: 466 DDRTLCG--PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
           ++    G  P S     L +  +L+  ++ +R    +++ E M+ +G+  D+  ++ L+ 
Sbjct: 648 NEMVSAGFSPSS-----LTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQ 702

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--YLSNS----------NLMP 571
                G  +    +   +  +G+ PD   F  LI  +CK  +L N+          N+ P
Sbjct: 703 VLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISP 762

Query: 572 DAATKELLKKSLWKEGRRKEAAAVEERCEK 601
           + AT   L   L   GR  EA  V    EK
Sbjct: 763 NIATFNTLLGGLESVGRIGEAGTVLIEMEK 792



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 88/220 (40%), Gaps = 6/220 (2%)

Query: 61  LLNDRLLDPFIVTHA-----LRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKS 115
           ++ +R ++P +VT+             D+AL +   +        N+  + +L   L ++
Sbjct: 439 MMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCE-GVEVNKFIVDSLVNGLRQN 497

Query: 116 QRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
            +  E   L  D S S      VN+  L+     +GD+        E   R  L     Y
Sbjct: 498 GKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVY 557

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           N+ ++     GK  EA     ++ + G  P+  TY  MI      G+   AL++   + +
Sbjct: 558 NVFINCLCILGKFKEAKSILTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKM 617

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             IK     Y  LV G  G    ++AK LLNEM   G  P
Sbjct: 618 SSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSP 657



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 95/481 (19%), Positives = 174/481 (36%), Gaps = 68/481 (14%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + +  L+  Y   GD    LS  +    +   +    YN +++ + + G+    V+  R 
Sbjct: 170 IGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQ----VDAARG 225

Query: 198 VID----EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
           V+D     G  PN  TYT  I +      ++ A +++  +    +         LV G  
Sbjct: 226 VLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLC 285

Query: 254 GVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVR 312
              RF EA +L  EM   G  P       L + + + G  +     L EM+    + ++ 
Sbjct: 286 RDGRFSEAYALFREMDKVGAVPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLV 345

Query: 313 YYEDGSD--DDEDENDDNNSGVRIAY-------GVQLKPWLDPKALANTLDEWSPEVVSL 363
            Y    D    + + D+    +R A        GV     +D    A+ +DE   E V L
Sbjct: 346 TYTALMDWLGKQGKTDEVKDTLRFALSDNLSLNGVTYTVLIDALCKAHNVDE--AEQVLL 403

Query: 364 LADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVE 423
             + K +              SP                  +V     ++    + G ++
Sbjct: 404 EMEEKSI--------------SP------------------NVVTFSSVINGFVKRGLLD 431

Query: 424 LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLY 483
                   ++  G+     T   +ID +   +  DAAL+ +HD   LC  +   K ++  
Sbjct: 432 KATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHD--MLCEGVEVNKFIV-- 487

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
            SL+  L +  +  +A+ + ++   SG+  D   ++ L+      GD     K    +  
Sbjct: 488 DSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMD 547

Query: 544 NGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKE 591
             + PDA ++ V I   C              + N  L PD +T   +  S  ++G   +
Sbjct: 548 RNMLPDAVVYNVFINCLCILGKFKEAKSILTEMRNMGLKPDQSTYNTMIVSHCRKGETAK 607

Query: 592 A 592
           A
Sbjct: 608 A 608



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 51/105 (48%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y+I+++ + K     EA+  + +++ +G +P   TY  +I      G +  A E+F  +
Sbjct: 801 TYDILVTGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDM 860

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA 278
               +  TS  Y ILV G+  +    E K  L +M++ G  P + 
Sbjct: 861 QKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPSKG 905



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 87/208 (41%), Gaps = 20/208 (9%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           +L  L+ H H   V   +A++   G  +PF  + +     G+ +       A   DR   
Sbjct: 109 LLAALSDHAHAPAV---LAEMCKRG--VPFDGVTVNTLLAGLCRNGQVDAAAALADRG-- 161

Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
           G I    + + +++L+    +      A++V + M   G+  DV  ++ L+  F   G  
Sbjct: 162 GGIHALDV-IGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQV 220

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELL 579
              + +  M+++ GV+P+   +   I  YC+             +  + ++ D  T   L
Sbjct: 221 DAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSAL 280

Query: 580 KKSLWKEGRRKEAAAVEERCEKINDVPS 607
              L ++GR  EA A+    +K+  VP+
Sbjct: 281 VAGLCRDGRFSEAYALFREMDKVGAVPN 308



 Score = 40.0 bits (92), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 40/82 (48%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           L Y  L+    K     +A+ +  EM+  G VP V T++ L+  F   G     ++LF  
Sbjct: 800 LTYDILVTGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKD 859

Query: 541 VRQNGVEPDAYMFKVLIQAYCK 562
           +++ GV P +  + +L+  + +
Sbjct: 860 MQKRGVHPTSCTYDILVSGWSR 881


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 78/393 (19%), Positives = 158/393 (40%), Gaps = 40/393 (10%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y  V++   K+G    A++ FR++ +     +   Y+++I+ L   G LD AL +F+ +
Sbjct: 211 TYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEM 270

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFI 292
            +  IK     Y  ++ G     R+D+   +L EM      P      AL +   + G +
Sbjct: 271 EMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKL 330

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
             A E   EM+      +   Y    D    EN       R+    Q+   +  K     
Sbjct: 331 LEAKELYNEMVARGIAPDTITYSSLIDGFCKEN-------RLGEANQMLDLMVSKG---- 379

Query: 353 LDEWSPEVV--SLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
                P +V  S+L ++         CK     K  +     FC ++ + G   D     
Sbjct: 380 ---CEPNIVTYSILINS--------YCKA----KRVDNGMRLFCEISSK-GLVADTVTYN 423

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470
            ++    + G + +   L  ++ S G+     T  +++D    + +   AL+ F      
Sbjct: 424 TLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFE----- 478

Query: 471 CGPISKFKLML---LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
              + K +++L   +Y+ ++  +    +  DA ++   +   G+ PDV T++ ++     
Sbjct: 479 --KMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCK 536

Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
           +G       LF  ++++G  P    + +LI+A+
Sbjct: 537 KGSLSEADMLFRKMKEDGCAPSDCTYNILIRAH 569



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 66/322 (20%), Positives = 117/322 (36%), Gaps = 61/322 (18%)

Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
           G+L+  LS +NE   +       +Y+ ++      G+  +  +  R++I    IPN  T+
Sbjct: 258 GNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTF 317

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
           + +I+  V  GKL  A E+++ +    I   +  Y  L++GF    R  EA  +L+ M  
Sbjct: 318 SALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVS 377

Query: 271 DGKFPG------------------RAMRVALERMQE-------------MGFIQG----- 294
            G  P                     MR+  E   +              GF Q      
Sbjct: 378 KGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNV 437

Query: 295 ANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLD 354
           A E  +EM+      +V                      + YG+ L    D   L   L+
Sbjct: 438 AKELFQEMVSRGVPPSV----------------------VTYGILLDGLCDNGELQKALE 475

Query: 355 EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT 414
            +     S +     ++   ++   + +    + AW  FC ++ + G   DV     M+ 
Sbjct: 476 IFEKMQKSRMILGIGIYN--IIIHGMCNASKVDDAWSLFCSLSVK-GVKPDVLTYNVMIG 532

Query: 415 ILARHGHVELVDRLIAKLRSDG 436
            L + G +   D L  K++ DG
Sbjct: 533 GLCKKGSLSEADMLFRKMKEDG 554



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 79/169 (46%), Gaps = 1/169 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+  Y  +  ++  +  + E   +  +  T +YN ++  + ++GK   A E F++
Sbjct: 385 VTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQE 444

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++  G  P+  TY ++++ L + G+L  ALE+F  +   R+      Y I++ G     +
Sbjct: 445 MVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASK 504

Query: 258 FDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPD 305
            D+A SL   +   G  P      V +  + + G +  A+   R+M  D
Sbjct: 505 VDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKED 553



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/245 (20%), Positives = 99/245 (40%), Gaps = 2/245 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           IV  +L    N D ALS+   ++       +     ++   L    R  +   ++ ++  
Sbjct: 249 IVIDSLCKDGNLDDALSLFNEMEM-KGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIG 307

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
              +   V F  L+  +   G L      +NE   R     T +Y+ ++  + K  +  E
Sbjct: 308 RNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGE 367

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A +    ++ +G  PN  TY+++I       ++D+ + +F  +    +   +  Y  LV+
Sbjct: 368 ANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQ 427

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIK 309
           GF    + + AK L  EM   G  P      + L+ + + G +Q A E   +M   + I 
Sbjct: 428 GFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMIL 487

Query: 310 NVRYY 314
            +  Y
Sbjct: 488 GIGIY 492



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 8/164 (4%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           +L  + + G+  L   L  K+    ++       ++ID        D AL  F++     
Sbjct: 215 VLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEME--- 271

Query: 472 GPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
             +   K  ++ YSS++  L    R  D   +L EMI   I+P+V TFS L+  F  +G 
Sbjct: 272 --MKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGK 329

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--YLSNSNLMPD 572
               ++L++ +   G+ PD   +  LI  +CK   L  +N M D
Sbjct: 330 LLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLD 373



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 12/118 (10%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           +S+L+    K  +  +A  +  EM+  GI PD  T+S L+  F  +       ++  ++ 
Sbjct: 317 FSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMV 376

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGR 588
             G EP+   + +LI +YCK             +S+  L+ D  T   L +   + G+
Sbjct: 377 SKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGK 434



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 96/238 (40%), Gaps = 6/238 (2%)

Query: 40  AQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHAL-----RSAPNADSALSIMEALKS 94
           + LID      R   +N +  L+  +  +P IVT+++       A   D+ + +   + S
Sbjct: 353 SSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEI-S 411

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
           +     +  T + L     +S + +  K L  ++ S       V +  L+     +G+L+
Sbjct: 412 SKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQ 471

Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
             L  + + ++   +L    YNI++       K  +A   F  +  +G  P+  TY VMI
Sbjct: 472 KALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMI 531

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
             L   G L  A  +F  +       +   Y IL+   +G      +  L+ EM+  G
Sbjct: 532 GGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILIRAHLGGSGVISSVELIEEMKMRG 589



 Score = 43.5 bits (101), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 101/534 (18%), Positives = 209/534 (39%), Gaps = 71/534 (13%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           ++F  L    +   + +LVL    E        +  + NI+++ + +  K   A     +
Sbjct: 70  IDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMNIMINCFCRKRKLLFAFSVVGR 129

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
            +  G  PN+ T++ +I      G++  A+ +   +  M+ +        L+ G     R
Sbjct: 130 ALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGR 189

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRV----ALERMQEMGFIQGANEFLREMLPDKRIKN--V 311
             EA  L++ M    K+   A  +     L RM + G    A +  R+M  ++ IK   V
Sbjct: 190 VTEALVLIDRMV---KYGCEANEITYGPVLNRMCKSGNTALALDLFRKM-EERSIKASVV 245

Query: 312 RY-------YEDGSDDDEDE--NDDNNSGVR---IAYGVQLKP------WLDPKALANTL 353
           +Y        +DG+ DD     N+    G++   +AY   +        W D   +   +
Sbjct: 246 QYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREM 305

Query: 354 DEWS--PEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEK 411
              +  P VV+  A         L+   ++  K  E    +   VA   G   D      
Sbjct: 306 IGRNIIPNVVTFSA---------LIDVFVKEGKLLEAKELYNEMVA--RGIAPDTITYSS 354

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           ++    +   +   ++++  + S G      T  ++I+ Y  +K+ D  ++ F +     
Sbjct: 355 LIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCE----- 409

Query: 472 GPISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
             IS   L+   + Y++L++   +  +   A  + +EM+  G+ P V T+  L+      
Sbjct: 410 --ISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDN 467

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATK 576
           G+ +   ++F  ++++ +     ++ ++I   C              LS   + PD  T 
Sbjct: 468 GELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTY 527

Query: 577 ELLKKSLWKEGRRKEAAAV-----EERCEKINDVPSLALRGHIWA---VSSADL 622
            ++   L K+G   EA  +     E+ C   +   ++ +R H+     +SS +L
Sbjct: 528 NVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILIRAHLGGSGVISSVEL 581


>gi|56201849|dbj|BAD73299.1| fertility restorer B-like [Oryza sativa Japonica Group]
 gi|56202086|dbj|BAD73615.1| fertility restorer B-like [Oryza sativa Japonica Group]
          Length = 647

 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 5/223 (2%)

Query: 60  SLLNDRLLDPFIVTHA----LRSAPNADSALSIMEALKSNPNFSH-NQSTLHALATVLAK 114
           SLL D     F  T A    L  A  +D+A+ I +A++   N    +  + + +   L +
Sbjct: 258 SLLADMRAAGFAPTTATYNVLVKAHCSDAAVPIDDAVRVFRNIPKPDACSYNTVIDGLCR 317

Query: 115 SQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTES 174
             R  E + L  ++ ++      V +  L+ W +     +  L  ++E  +R  + +  +
Sbjct: 318 RGRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRGIMPNVVT 377

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           Y+ ++    K G+   AVE   +++ E  +PN+ TY+ +I+ L   G L  A+E+   + 
Sbjct: 378 YSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEILDRMR 437

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR 277
           L   K  +  +  L+ G     R  EA + L+EM   G  P R
Sbjct: 438 LQGRKPDAGLFGKLIVGLCDAGRALEASNYLDEMNFAGIRPNR 480



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 98/244 (40%), Gaps = 24/244 (9%)

Query: 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR 445
           P  A H F       G  H   +   +L  L  H H+ L   L+A +R+ G     +T  
Sbjct: 217 PLAALHLFRSAPSALGLPHSARSYTAVLAALVAHSHLSLARSLLADMRAAGFAPTTATYN 276

Query: 446 LIIDFYGISKKA---DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINV 502
           +++  +  S  A   D A++ F   R +  P +       Y++++  L +  R  +A ++
Sbjct: 277 VLVKAH-CSDAAVPIDDAVRVF---RNIPKPDA-----CSYNTVIDGLCRRGRLPEARDL 327

Query: 503 LEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
             EMI +G  P V T++ L++  A +       KLF  + + G+ P+   +  LI   CK
Sbjct: 328 FAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMARRGIMPNVVTYSSLIDGLCK 387

Query: 563 ------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLAL 610
                        +     +P+  T   +   L KEG   +A  + +R       P   L
Sbjct: 388 GGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEILDRMRLQGRKPDAGL 447

Query: 611 RGHI 614
            G +
Sbjct: 448 FGKL 451



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 10/160 (6%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           D  +   ++  L R G +     L A++ ++G      T   +I +       D ALK F
Sbjct: 304 DACSYNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLF 363

Query: 465 HDDRTLCGPISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL 521
            +       +++  +M   + YSSL+  L K  R   A+ +L+ M+    +P+  T+S +
Sbjct: 364 DE-------MARRGIMPNVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSV 416

Query: 522 MYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           +     +G      ++   +R  G +PDA +F  LI   C
Sbjct: 417 IDGLCKEGCLGQAMEILDRMRLQGRKPDAGLFGKLIVGLC 456


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 87/212 (41%), Gaps = 31/212 (14%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           D  +   +LT L R GH    DR  A LR+  +  P    R     Y +       ++A 
Sbjct: 76  DAVSYNTVLTALCRRGHH---DRAGALLRAMSLE-PHPACRPNAVSYTV------LMRAL 125

Query: 465 HDDRTLCGPISKFKLM---------LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
             DR     +   + M         + Y +L+R L        A+ ++ EM  SGI P+V
Sbjct: 126 CADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNV 185

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------Y 563
             +S L+  +   G  + V K+F  + + G+EPD  M+  LI + CK             
Sbjct: 186 VVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDM 245

Query: 564 LSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
           +    L P+  T  +L   + KEG  KEA  V
Sbjct: 246 MVRRGLEPNVVTYNVLINCMCKEGSVKEAIGV 277



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 81/198 (40%), Gaps = 1/198 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           ++  AL +   AD A+ ++ +++S      +  T   L   L  +    +   L+G++  
Sbjct: 120 VLMRALCADRLADQAVGLLRSMRS-AGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCE 178

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           S      V + +L+Q Y  SG  E V   + E  ++        Y  ++    K GK  +
Sbjct: 179 SGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKK 238

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A      ++  G  PN  TY V+I  +   G +  A+ V   +    +      Y  L++
Sbjct: 239 AHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIK 298

Query: 251 GFVGVERFDEAKSLLNEM 268
           G   V   DEA  LL EM
Sbjct: 299 GLSDVLEMDEAMWLLEEM 316



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 1/130 (0%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++N V+      G+  +A +    + + G + N  TY ++I  L+ + K+  A+E+   +
Sbjct: 329 TFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEM 388

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA-LERMQEMGFI 292
             + ++  S  Y IL++GF  + + D A+ LL+ MRD G  P     +  L  M E G +
Sbjct: 389 TSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMM 448

Query: 293 QGANEFLREM 302
           + A     EM
Sbjct: 449 ERARNLFNEM 458



 Score = 42.7 bits (99), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 50/242 (20%), Positives = 105/242 (43%), Gaps = 12/242 (4%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHAL--------RSAPNADSALSIMEALK 93
           LIDS+    ++  ++ +  ++  R L+P +VT+ +         S   A   L  M    
Sbjct: 226 LIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKG 285

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
             P+     + +  L+ VL   +    L+ ++   +  K  NV V F +++Q     G +
Sbjct: 286 VAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKP-NV-VTFNSVIQGLCDIGRM 343

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
                      +   +++  +YN+++    +  K  +A+E   ++   G  P+S TY+++
Sbjct: 344 RQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSIL 403

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           I+    + ++D A ++ S +    I+     Y+ L+         + A++L NEM  D  
Sbjct: 404 IKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEM--DNN 461

Query: 274 FP 275
           FP
Sbjct: 462 FP 463



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 38/78 (48%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS+++    K      A  +L+ ++  G+ PD  T+S ++  FA  GD +    +   + 
Sbjct: 469 YSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMT 528

Query: 543 QNGVEPDAYMFKVLIQAY 560
            +G  PD  +F  LIQ Y
Sbjct: 529 ASGFLPDVAVFDSLIQGY 546



 Score = 41.2 bits (95), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 68/165 (41%), Gaps = 18/165 (10%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +++Y+ L+ +L K  +   A  V++ M+  G+ P+V T++ L+     +G  K    +  
Sbjct: 220 VVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLK 279

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM--------------PDAATKELLKKSLWK 585
            + + GV PD   +  LI+     L     M              P+  T   + + L  
Sbjct: 280 KMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCD 339

Query: 586 EGRRKEAAAVEERCEKINDVPSLALRGHIWAVSSADLTRVHSIYR 630
            GR ++A  V    E+   + +L      + +    L RVH + +
Sbjct: 340 IGRMRQAFQVRAMMEETGCMVNLV----TYNLLIGGLLRVHKVRK 380


>gi|255574497|ref|XP_002528160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532417|gb|EEF34211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 569

 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 108/232 (46%), Gaps = 26/232 (11%)

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA--A 460
           T D YAL  +L      G +E  + + A++R  G  LP S I       G+ K  +   A
Sbjct: 182 TEDTYAL--LLKAYCTSGLLEKAEAIFAEMRKYG--LPPSAIVYNAYIDGLMKAGNPQRA 237

Query: 461 LKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           ++ F    R  C P ++      Y+ L+    K  + + A+ +  EM      P++ T++
Sbjct: 238 VEIFQRMKRDCCQPSTE-----TYTLLINLHGKASQSYMALKLFNEMRSQKCKPNICTYT 292

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNS 567
            L+  FA +G  +  +++F  ++++G EPD Y +  L++AY +             + + 
Sbjct: 293 ALVNAFAREGLCEKAEEIFEQLQEDGHEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHM 352

Query: 568 NLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAVSS 619
              PD A+  ++  +  + G  ++A AV E  +++   P+  ++ H+  +S+
Sbjct: 353 GCEPDRASYNIMVDAYGRGGLHEDAQAVFEEMKRLGITPT--MKSHMLLLSA 402



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 6/175 (3%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L++ Y TSG LE   + + E R+     S   YN  +    K G    AVE F+++  + 
Sbjct: 189 LLKAYCTSGLLEKAEAIFAEMRKYGLPPSAIVYNAYIDGLMKAGNPQRAVEIFQRMKRDC 248

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P++ TYT++I       +   AL++F+ +   + K     Y  LV  F      ++A+
Sbjct: 249 CQPSTETYTLLINLHGKASQSYMALKLFNEMRSQKCKPNICTYTALVNAFAREGLCEKAE 308

Query: 263 SLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREML-----PDKRIKNV 311
            +  ++++DG  P   A    +E     GF  GA E    M      PD+   N+
Sbjct: 309 EIFEQLQEDGHEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNI 363



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/201 (19%), Positives = 84/201 (41%), Gaps = 1/201 (0%)

Query: 75  ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFL 134
            L  A N   A+ I + +K +     +  T   L  +  K+ +++    L  ++ S K  
Sbjct: 227 GLMKAGNPQRAVEIFQRMKRD-CCQPSTETYTLLINLHGKASQSYMALKLFNEMRSQKCK 285

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
                +  L+  ++  G  E     + + ++        +YN +M  Y++ G  + A E 
Sbjct: 286 PNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHEPDVYAYNALMEAYSRAGFPYGAAEI 345

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
           F  +   G  P+  +Y +M++     G  + A  VF  +  + I  T K +++L+  +  
Sbjct: 346 FSLMQHMGCEPDRASYNIMVDAYGRGGLHEDAQAVFEEMKRLGITPTMKSHMLLLSAYSK 405

Query: 255 VERFDEAKSLLNEMRDDGKFP 275
                + + ++NE+ + G  P
Sbjct: 406 AGDVAKCEDIVNELHESGLEP 426


>gi|297804088|ref|XP_002869928.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315764|gb|EFH46187.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 731

 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 107/248 (43%), Gaps = 24/248 (9%)

Query: 348 ALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY 407
           A     + W P VVS L   + V T  +V +VL+       A  FF W   Q GY HD  
Sbjct: 105 AFRKNRNHWGPSVVSELNKLRRV-TPSIVAEVLKLGNDATAAAKFFHWAGKQKGYKHDFA 163

Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDD 467
           A       L R+GH    D+L   + S G         ++I  +  +++    L+ ++  
Sbjct: 164 AYNAFAYCLNRNGHFRAADQLPELMDSQGRPPSEKQFEILIRMHADNRR---GLRVYY-- 218

Query: 468 RTLCGPISKFKL---MLLYSSLLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLMY 523
             +   + KF     + LY+ ++  L K    FD A+ V E+    G+V +  TF  L+ 
Sbjct: 219 --VYEKMKKFGFKPRVFLYNRIMDALVK-NGYFDLALAVYEDFKEDGLVEESTTFMILVK 275

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSL 583
                G  + + ++   +R+N  +PD + +  +I+     +S  NL  DA+ +      +
Sbjct: 276 GLCKAGRIEEMLEILQRMRENLCKPDVFAYTAMIKT---LVSEGNL--DASLR------V 324

Query: 584 WKEGRRKE 591
           W E +R E
Sbjct: 325 WDEMKRDE 332



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 81/176 (46%), Gaps = 1/176 (0%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  +M     +G  +L L+ + ++++   +  + ++ I++    K G+  E +E  +++ 
Sbjct: 235 YNRIMDALVKNGYFDLALAVYEDFKEDGLVEESTTFMILVKGLCKAGRIEEMLEILQRMR 294

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           +    P+   YT MI+ LV+ G LD++L V+  +    IK     Y  LV G     R +
Sbjct: 295 ENLCKPDVFAYTAMIKTLVSEGNLDASLRVWDEMKRDEIKPDVMAYGTLVVGLCKDGRIE 354

Query: 260 EAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
               L  EM+       R + RV +E     G ++ A +  ++++    I ++  Y
Sbjct: 355 RGYELFMEMKGKQILIDREIYRVLIEGFVADGKVRSACDLWKDLVDSGYIADLGIY 410



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 74/169 (43%), Gaps = 3/169 (1%)

Query: 137 SVNFMN-LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF 195
           SV+  N LM+     GD++  LS + E ++      + SY+I +  +   G   EA    
Sbjct: 510 SVSVYNILMEVLYKMGDIQKSLSLFYEMKEFGFEPDSSSYSIALCCFVDKGDVQEACSCH 569

Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA-LEVFSALPLMRIKRTSKQYLILVEGFVG 254
            ++I+   +P+   Y  + + L  +G++D+  L V   L  +       +Y++ V     
Sbjct: 570 EKIIEMSRVPSKAAYLSLTKGLCQIGEIDAVMLLVRECLGNVESGPMEFKYVLRVCHVCK 629

Query: 255 VERFDEAKSLLNEMRDDGKFPGRAMRVA-LERMQEMGFIQGANEFLREM 302
               ++   +++EM  +G      +  A +  M + G I+ A E   E+
Sbjct: 630 GSNAEKVMEVVDEMNQEGVSINEVIYCAIISGMSKHGTIKAAREVFAEL 678


>gi|294464465|gb|ADE77743.1| unknown [Picea sitchensis]
          Length = 245

 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 77/184 (41%), Gaps = 21/184 (11%)

Query: 374 RLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
           RLV  VL+   SP  A  FF W   QPG+TH+     K+  +L      E + +++ ++ 
Sbjct: 74  RLVKMVLKKTSSPSLALRFFQWAKLQPGFTHNTLTYNKLTNLLGSSKDFETLQKILTEM- 132

Query: 434 SDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKF--KLML-----LYSSL 486
                LP             S K      A+HDD  +   + +   KL L      Y  L
Sbjct: 133 -----LPAR--------RNYSVKTFTFATAWHDDSDMLNKVIEMIDKLELSPRRHAYEML 179

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           +  L +      A+ VLE+M+ +  V    TF  L+  F L      VQ LF M++  G 
Sbjct: 180 IAALCEDNHASAALGVLEKMVRADCVLRAATFRPLLTVFCLNDQMDKVQVLFEMMKMTGC 239

Query: 547 EPDA 550
            PD+
Sbjct: 240 PPDS 243


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 85/411 (20%), Positives = 153/411 (37%), Gaps = 72/411 (17%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN V+  + K G   +A + F++++  G  P+  TY  ++  L     +D A      +
Sbjct: 224 AYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQM 283

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA-MRVALERMQEMGFI 292
              R+   +  Y  L+ G+    ++ EA  +  EMR     P    + + +  + + G I
Sbjct: 284 VNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKI 343

Query: 293 QGANEFLREML-----PDKRIKNVR---YYEDGSDDDEDENDDNNSGVRIA-----YGVQ 339
           + A +    M      PD    N+    Y   G   D  +  D   G  IA     + V 
Sbjct: 344 KEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVL 403

Query: 340 LKPWLDPKALANTLDEWS--------PEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWH 391
           +K + +   L   +  ++        P+VV          T R V   L      + A  
Sbjct: 404 IKAYANCGMLDKAMIIFNEMRDHGVKPDVV----------TYRTVIAALCRIGKMDDAME 453

Query: 392 FFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY 451
            F  +  Q G   D YA   ++     HG +     LI+++ ++GM L            
Sbjct: 454 KFNQMIDQ-GVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLD----------- 501

Query: 452 GISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
                                       ++ +SS++  L K  R  DA N+ +  +  G+
Sbjct: 502 ----------------------------IVFFSSIINNLCKLGRVMDAQNIFDLTVNVGL 533

Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            PD   ++ LM  + L G  +   ++F  +   G+EP+   +  L+  YCK
Sbjct: 534 HPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCK 584



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 109/544 (20%), Positives = 207/544 (38%), Gaps = 70/544 (12%)

Query: 96  PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLEL 155
           P+     S +HAL    A  +    L+ ++    + + L  +  + NL+  YS++G  + 
Sbjct: 255 PDLVTYNSVVHALCKARAMDKAEAFLRQMV----NKRVLPNNWTYNNLIYGYSSTGQWKE 310

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
            +  + E R+ + L    + +++M    K GK  EA + F  +  +G  P+  +Y +M+ 
Sbjct: 311 AVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLN 370

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                G L    ++F  +    I      + +L++ +      D+A  + NEMRD G  P
Sbjct: 371 GYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKP 430

Query: 276 GRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRI 334
                R  +  +  +G +  A E   +M+ D+ +   +Y                     
Sbjct: 431 DVVTYRTVIAALCRIGKMDDAMEKFNQMI-DQGVAPDKY--------------------- 468

Query: 335 AYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLV---CKVLRHFKSPETAWH 391
           AY   ++ +    +L     E   E+++       V+ + ++   CK+ R   + +  + 
Sbjct: 469 AYNCLIQGFCTHGSLLKA-KELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDA-QNIFD 526

Query: 392 FFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY 451
               V   P    D      ++      G +E   R+   + S G+         +++ Y
Sbjct: 527 LTVNVGLHP----DAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGY 582

Query: 452 GISKKADAALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS 509
               + D  L  F +   R +  P +     +LYS ++  L +  R   A     EM  S
Sbjct: 583 CKIGRIDEGLSLFREMLQRGI-KPST-----ILYSIIIDGLFEAGRTVPAKMKFHEMTES 636

Query: 510 GIVPDVQTFSGLMYHFALQG-------DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           GI  D+ T     Y+  L+G       DE I   LF  +R   V+ +      +I    +
Sbjct: 637 GIAMDICT-----YNIVLRGLFKNRCFDEAIF--LFKELRAMNVKINIITLNTMIDGMFQ 689

Query: 563 Y------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLAL 610
                        +S S L+P   T  ++  +L KEG  +EA  +    +     P+  L
Sbjct: 690 TRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRL 749

Query: 611 RGHI 614
             H+
Sbjct: 750 LNHV 753



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 96/233 (41%), Gaps = 2/233 (0%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           V HAL  A   D A + +  +  N     N  T + L    + + +  E   +  ++   
Sbjct: 263 VVHALCKARAMDKAEAFLRQM-VNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRH 321

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
             L   V    LM      G ++     ++    + +     SYNI+++ YA  G   + 
Sbjct: 322 SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDM 381

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
            + F  ++ +G  P+  T+ V+I+   N G LD A+ +F+ +    +K     Y  ++  
Sbjct: 382 TDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAA 441

Query: 252 FVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREML 303
              + + D+A    N+M D G  P + A    ++     G +  A E + E++
Sbjct: 442 LCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIM 494



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 82/207 (39%), Gaps = 19/207 (9%)

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALK 462
           T   YA+  ++    R    EL      +L   G+R+       +++ +  +K+ D AL 
Sbjct: 113 TSHTYAI--LMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALD 170

Query: 463 AFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV--PDVQTFSG 520
                    G +     +  YS LL++L    +   A ++L  M   G V  P+V  ++ 
Sbjct: 171 ILLHRTPELGCVPD---VFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNT 227

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSN 568
           ++  F  +GD      LF  + Q G+ PD   +  ++ A CK             + N  
Sbjct: 228 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKR 287

Query: 569 LMPDAATKELLKKSLWKEGRRKEAAAV 595
           ++P+  T   L       G+ KEA  V
Sbjct: 288 VLPNNWTYNNLIYGYSSTGQWKEAVRV 314



 Score = 40.8 bits (94), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 23/156 (14%)

Query: 452 GISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
           G S +AD  L+   +   +C P      ++ Y++++    K      A ++ +EM+  GI
Sbjct: 199 GKSGQADDLLRMMAEGGAVCSPN-----VVAYNTVIDGFFKEGDVNKACDLFKEMVQRGI 253

Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ---NGVEPDAYMFKVLIQAYC------- 561
            PD+ T++ +++        + + K  + +RQ     V P+ + +  LI  Y        
Sbjct: 254 PPDLVTYNSVVHALC---KARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKE 310

Query: 562 -----KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                K +   +++PD  T  +L  SL K G+ KEA
Sbjct: 311 AVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEA 346


>gi|242091782|ref|XP_002436381.1| hypothetical protein SORBIDRAFT_10g001520 [Sorghum bicolor]
 gi|241914604|gb|EER87748.1| hypothetical protein SORBIDRAFT_10g001520 [Sorghum bicolor]
          Length = 546

 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 13/132 (9%)

Query: 496 DFDA-INVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK 554
           D DA + VL+EM   GIVPDV T++ ++  +  +GD +  Q+LF  +  +G  PDA M+ 
Sbjct: 219 DLDAALKVLDEMTGWGIVPDVVTYTTVLTAYCAKGDLEGAQQLFDDIVASGRRPDATMYT 278

Query: 555 VLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKI 602
           VL+  YC              +  + + P+  T  ++ ++  KEG+  EA  +       
Sbjct: 279 VLVDGYCHRGKLQDAARIMDEMEAAGVKPNEVTYSVVIEACCKEGKSIEACDLTREMLGA 338

Query: 603 NDVPSLALRGHI 614
             VP   L   +
Sbjct: 339 GYVPDTPLCAKV 350



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 76/185 (41%), Gaps = 8/185 (4%)

Query: 136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF 195
           VS N   L++     GDL+  L   +E      +    +Y  V++ Y   G    A + F
Sbjct: 205 VSCNI--LLKGLVGMGDLDAALKVLDEMTGWGIVPDVVTYTTVLTAYCAKGDLEGAQQLF 262

Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
             ++  G  P++  YTV+++   + GKL  A  +   +    +K     Y +++E     
Sbjct: 263 DDIVASGRRPDATMYTVLVDGYCHRGKLQDAARIMDEMEAAGVKPNEVTYSVVIEACCKE 322

Query: 256 ERFDEAKSLLNEMRDDGKFPGRAMRV-ALERMQEMGFIQGANEFLREML-----PDKRIK 309
            +  EA  L  EM   G  P   +    ++ + + G    ANE  R+M+     PD  + 
Sbjct: 323 GKSIEACDLTREMLGAGYVPDTPLCAKVVDVLCQDGKAGEANEIWRQMVKKSVPPDNTVV 382

Query: 310 NVRYY 314
           +   Y
Sbjct: 383 STLIY 387


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 89/465 (19%), Positives = 170/465 (36%), Gaps = 85/465 (18%)

Query: 174  SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
            +Y +++    K G   EA++ F ++I  G +P+   Y+ +++ L   G+L  ALE F  +
Sbjct: 1087 TYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEM 1146

Query: 234  PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFI 292
                I      Y  L+ G      + E    LN M D G  P      + ++ + + G +
Sbjct: 1147 EGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKV 1206

Query: 293  QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
              A + L  M    +  ++  Y                             ++   L   
Sbjct: 1207 GEAQQILELMRHKGKEPDILTY--------------------------NTLMNGLCLVGQ 1240

Query: 353  LDEWSPEVVSLLADAKF---VWTTRLVCKVLRHFKSPETAWHFFCWVAYQP-GYTHDVYA 408
            L++ + ++   LAD      V++  ++       +  + A+ FF     +P G       
Sbjct: 1241 LED-ATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFF--EEMRPKGLKPSTVT 1297

Query: 409  LEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR 468
               ++  L + G V    +L  ++++ G  L  ST  +++D  G+ K             
Sbjct: 1298 YNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLD--GLCKNGHLE-------- 1347

Query: 469  TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
                     + M L+ S+ +T  K                    P+++ FS L+      
Sbjct: 1348 ---------EAMDLFQSIKKTEHK--------------------PNIEVFSILLDGMCRA 1378

Query: 529  GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATK 576
            G  +   K F  + +NG+EPD   + +LI   C              +     +PD+ T 
Sbjct: 1379 GKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITF 1438

Query: 577  ELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAVSSAD 621
             ++ ++L KE    EA  + E     N  P  A+   +  ++S D
Sbjct: 1439 NVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLLCLASFD 1483



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/267 (19%), Positives = 107/267 (40%), Gaps = 7/267 (2%)

Query: 42   LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNP 96
            LID +    +   +  +  L+  +  +P I+T+      L      + A  + E+L ++ 
Sbjct: 1196 LIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESL-ADR 1254

Query: 97   NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
                N  + + L     K Q+  E      ++        +V +  L+     SG +   
Sbjct: 1255 GIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTA 1314

Query: 157  LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
               + E +   + L   +Y +++    K G   EA++ F+ +      PN   ++++++ 
Sbjct: 1315 QKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDG 1374

Query: 217  LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
            +   GKL+ A + F  +    ++  +  Y IL+ G        EA  LL +M + G  P 
Sbjct: 1375 MCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPD 1434

Query: 277  R-AMRVALERMQEMGFIQGANEFLREM 302
                 V ++ + +   I  A + L EM
Sbjct: 1435 SITFNVIIQNLLKENEIHEAIQLLEEM 1461



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 8/205 (3%)

Query: 71   IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
            I+ + L  A     A+ + E +K N     +  T   +   L K     E   +  ++  
Sbjct: 1056 ILINGLCKARKTGLAIKLHEKMKGN--CKGDVFTYGMIIDALCKDGMTTEALDMFSEMIG 1113

Query: 131  SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
            +  L   V + +LM      G L+  L  + E   R       +YN ++   ++ G   E
Sbjct: 1114 AGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKE 1173

Query: 191  AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQ---YLI 247
                   ++D G  P++ T+T++I+ L   GK+  A ++   L LMR K        Y  
Sbjct: 1174 VTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQI---LELMRHKGKEPDILTYNT 1230

Query: 248  LVEGFVGVERFDEAKSLLNEMRDDG 272
            L+ G   V + ++A  L   + D G
Sbjct: 1231 LMNGLCLVGQLEDATKLFESLADRG 1255



 Score = 40.8 bits (94), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 12/101 (11%)

Query: 498  DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
            DAI + +  + S  +P   TF+ L+   A  G    V  ++  +   G++PD Y   +LI
Sbjct: 929  DAIKLFDRSLCSEPMPCTDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNILI 988

Query: 558  QAYCKYLS------------NSNLMPDAATKELLKKSLWKE 586
               C   +                 PDA T   L K +W E
Sbjct: 989  HCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWME 1029


>gi|359490014|ref|XP_002275213.2| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Vitis vinifera]
          Length = 494

 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 98/219 (44%), Gaps = 5/219 (2%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           AD  L+ M+AL        N++T  AL     ++ R +++  +IG++S   F   S  + 
Sbjct: 112 ADKVLAEMDAL----GIGRNRATYEALVDYYGRAGRLNDVWAVIGEMSRDGFGPDSFVYS 167

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            ++  Y  +G  +  +    E R+    L    YN ++  + K G+  EA+E F ++ +E
Sbjct: 168 KVIGVYRDNGMWKKAMEIVREIREMGVSLDKRIYNSIIDTFGKCGELSEALEVFEKMQEE 227

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G  P+  T+  +I+     G +  ALE+FS +    +    K ++ ++       ++D  
Sbjct: 228 GVKPDIMTWNSLIQWHCKAGDVGKALELFSKMQEEGLYPDPKIFITIISRLGEQGKWDVI 287

Query: 262 KSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQGANEFL 299
           K     M+  G +  G    + ++   + G  QG  E +
Sbjct: 288 KRNFENMKCRGHQRSGAIYAILVDIYGQYGRFQGPEECI 326



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 81/436 (18%), Positives = 167/436 (38%), Gaps = 60/436 (13%)

Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           LS  SY  V+      G+  EA   FR+++  G   + R Y VM+   +  G L+ A +V
Sbjct: 56  LSLGSYTTVIEALGSVGRTLEAEAIFREMVHLGLKLDLRVYNVMLRSCLRKGLLELADKV 115

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQE 288
            + +  + I R    Y  LV+ +    R ++  +++ EM  DG  P        +   ++
Sbjct: 116 LAEMDALGIGRNRATYEALVDYYGRAGRLNDVWAVIGEMSRDGFGPDSFVYSKVIGVYRD 175

Query: 289 MGFIQGANEFLREMLP-----DKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPW 343
            G  + A E +RE+       DKRI N         D   +  + +  + +   +Q +  
Sbjct: 176 NGMWKKAMEIVREIREMGVSLDKRIYNSII------DTFGKCGELSEALEVFEKMQ-EEG 228

Query: 344 LDPKALA-NTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGY 402
           + P  +  N+L +W  +                V K L  F   +           + G 
Sbjct: 229 VKPDIMTWNSLIQWHCKAGD-------------VGKALELFSKMQ-----------EEGL 264

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK---ADA 459
             D      +++ L   G  +++ R    ++  G +   +   +++D YG   +    + 
Sbjct: 265 YPDPKIFITIISRLGEQGKWDVIKRNFENMKCRGHQRSGAIYAILVDIYGQYGRFQGPEE 324

Query: 460 ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
            + A   +    G      +  + ++       C++    + VL+ M   GI P++   +
Sbjct: 325 CISALKSE----GIQPSASMFCVLANAYAQQGLCEQ---TVKVLQLMETEGIEPNLIMLN 377

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNS 567
            L+  F + G       ++  ++  G+ PD   +  L++A  +             + ++
Sbjct: 378 MLINAFGIAGRHLEALSVYHHIKDTGISPDVVTYSTLMKACIRARKFDKVPEIYEEMESA 437

Query: 568 NLMPDAATKELLKKSL 583
              PD   +E+L+ +L
Sbjct: 438 GCTPDRKAREMLQTAL 453


>gi|449503427|ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71060, mitochondrial-like [Cucumis sativus]
          Length = 542

 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 105/249 (42%), Gaps = 24/249 (9%)

Query: 360 VVSLLADAKFVWTTRLVCKVLRHFKSPE-TAWHFFCWVAYQPGYTHDVYALEKMLTILAR 418
           + SLL  A    +  L+ +VL+   +    A  FF W   Q G+ H   +   ++  L +
Sbjct: 109 IESLLDGAPMELSPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGK 168

Query: 419 HGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFK 478
                ++  L++ ++  G+ L   T  LI   Y  ++K   A+++F         + KF 
Sbjct: 169 IKQFNVIWNLVSDMKRKGI-LSRETFALITRRYARARKVKEAVESFEK-------MEKFG 220

Query: 479 LMLL---YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ 535
             +    ++ LL TL K +    A  V ++M      PD+++++ L+  +    +   + 
Sbjct: 221 FQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFKPDIKSYTILLEGWGQDQNLLKLN 280

Query: 536 KLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSL 583
           +++  +R  G EPD   F +LI A+CK             +   N+ P       L   L
Sbjct: 281 EVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCTLINGL 340

Query: 584 WKEGRRKEA 592
             E R KEA
Sbjct: 341 GSEKRLKEA 349



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 1/104 (0%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN V+  Y  + K   A     ++   G  PNSRTY +++ HL+   K   A  VF  +
Sbjct: 367 TYNAVVGAYCWSMKMAYAYRMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRM 426

Query: 234 PLM-RIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
                 + T   Y I++  F   ER D A  + +EM+  G  PG
Sbjct: 427 SREPGCEPTLSTYDIMIRMFCNEERVDMAIQIWDEMKAKGVLPG 470



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 39/229 (17%)

Query: 50  VRSNSSNSLSSLLNDRLLD--PFIVTHALRSAPNADS-ALSIMEALKSNPNFSHNQSTLH 106
           +  N ++ + SLL+   ++  P ++   L+   NA   ALS     +    F H   + +
Sbjct: 101 ISKNPNSCIESLLDGAPMELSPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYN 160

Query: 107 ALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR 166
            L   L K ++ + +  L+ D+                                    +R
Sbjct: 161 LLIEALGKIKQFNVIWNLVSDM------------------------------------KR 184

Query: 167 AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
             +LS E++ ++   YA+  K  EAVE+F ++   G       +  +++ L     +  A
Sbjct: 185 KGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKA 244

Query: 227 LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            EVF  +   R K   K Y IL+EG+   +   +   +  EMRD+G  P
Sbjct: 245 QEVFDKMKHGRFKPDIKSYTILLEGWGQDQNLLKLNEVYREMRDEGFEP 293



 Score = 42.7 bits (99), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 45/230 (19%), Positives = 90/230 (39%), Gaps = 7/230 (3%)

Query: 56  NSLSSLLNDRLLDPFIVT-----HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALAT 110
           N +   + D   +P +VT     +A   A   D A+ +   +++  N   +      L  
Sbjct: 280 NEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAK-NIKPSPHVFCTLIN 338

Query: 111 VLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLL 170
            L   +R  E       +  S F   +  +  ++  Y  S  +       +E R+     
Sbjct: 339 GLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSGVGP 398

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDE-GAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           ++ +Y+I++    K  K+ EA   F+++  E G  P   TY +MI    N  ++D A+++
Sbjct: 399 NSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFCNEERVDMAIQI 458

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM 279
           +  +    +      +  L+       + ++A +   EM D G  P   M
Sbjct: 459 WDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLDVGIRPPATM 508



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 35/179 (19%), Positives = 72/179 (40%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
            F    S  + L   L KS+   + + +   +   +F     ++  L++ +    +L  +
Sbjct: 220 GFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFKPDIKSYTILLEGWGQDQNLLKL 279

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
              + E R         ++ I+++ + K  K  EA+  F ++  +   P+   +  +I  
Sbjct: 280 NEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCTLING 339

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           L +  +L  ALE F  L L      +  Y  +V  +    +   A  +++EMR  G  P
Sbjct: 340 LGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSGVGP 398


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 105/241 (43%), Gaps = 25/241 (10%)

Query: 67  LDPFIVTHAL--------RSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRN 118
           L+P +VTH +        ++   A +  + ME    +PN      T   L     K  R 
Sbjct: 294 LEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPN----AMTYTTLIDAYCKDGRM 349

Query: 119 HELKTLIGD-ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI 177
            +   L    I    F  VS  +  L+      GD++   S  NE   +       +YNI
Sbjct: 350 EDAFALYNMMIDRGIFPEVST-YNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNI 408

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           ++    K G++ +AV+   ++ ++G  P+  TY  +++     G L +AL V +     R
Sbjct: 409 LIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRT-----R 463

Query: 238 IKRTSKQ-----YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGF 291
           ++R  KQ     + +L++GF    R ++A  LLNEM + G  P R    +  E M E GF
Sbjct: 464 MERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEIIKEEMMEKGF 523

Query: 292 I 292
           +
Sbjct: 524 V 524



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 101/462 (21%), Positives = 181/462 (39%), Gaps = 95/462 (20%)

Query: 148 STSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNS 207
           S +GD+E V   + E  +R   L+  S+NIV++   K GK   A +    +   G  PN 
Sbjct: 134 SENGDMEFV---YREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNV 190

Query: 208 RTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQ---YLILVEGFVGVERFDEAKSL 264
            TY  +I+    +G++    +  + L  M  K        Y IL++GF      DE  S 
Sbjct: 191 ITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCK----DENVS- 245

Query: 265 LNEMRDDGKFPGRAMRVALERMQEMGF---IQGANEFLREMLPDKRIKNVRYYEDGSDDD 321
                        AMRV  E MQ  G    +   N  +  +  D ++       D     
Sbjct: 246 ------------GAMRVFGE-MQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSS 292

Query: 322 EDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLR 381
           + E +       + + V +  +   K +         E ++L  D +            +
Sbjct: 293 DLEPN------VVTHNVLINGFCKNKTV--------NEAINLFNDME------------K 326

Query: 382 HFKSPETAWHFFCWVAY-QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP 440
               P    +     AY + G   D +AL  M+           +DR        G+   
Sbjct: 327 QGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMM-----------IDR--------GIFPE 367

Query: 441 FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL---MLLYSSLLRTLTKCKRDF 497
            ST   +I   G+ +K D  +KA    R+L   +   KL   ++ Y+ L+ +L K     
Sbjct: 368 VSTYNCLI--AGLCRKGD--VKA---ARSLMNEMVSKKLSADVVTYNILIDSLCKKGESR 420

Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
            A+ +L+EM   G+ P   T++ LM  +  +G+ +    + + + + G + +     VLI
Sbjct: 421 KAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLI 480

Query: 558 QAYC--KYLSNSN----------LMPDAATKELLKKSLWKEG 587
           + +C    L ++N          L+P+  T E++K+ + ++G
Sbjct: 481 KGFCLKGRLEDANGLLNEMLERGLVPNRTTYEIIKEEMMEKG 522



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 45/248 (18%), Positives = 103/248 (41%), Gaps = 5/248 (2%)

Query: 71  IVTHALRSAPNADSALSIMEALKS---NPNFSHNQSTLHALATVLAKSQRNHELKTLIGD 127
           IV + L      + A  ++E +K    +PN     + +      + +  + ++   ++ +
Sbjct: 160 IVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCK-MGRIGKMYKADAILKE 218

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           + +       V +  L+  +    ++   +  + E +++    +  +YNI+++     GK
Sbjct: 219 MVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGK 278

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
             EAV    Q++     PN  T+ V+I        ++ A+ +F+ +    +   +  Y  
Sbjct: 279 VDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTT 338

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDK 306
           L++ +    R ++A +L N M D G FP        +  +   G ++ A   + EM+  K
Sbjct: 339 LIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKK 398

Query: 307 RIKNVRYY 314
              +V  Y
Sbjct: 399 LSADVVTY 406



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 41/192 (21%), Positives = 85/192 (44%), Gaps = 22/192 (11%)

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
           + R G +   D ++ ++ + G+     T  ++ID +   +    A++ F       G + 
Sbjct: 203 MGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVF-------GEMQ 255

Query: 476 KFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
           +  L   ++ Y+ L+  L    +  +A+ + ++M+ S + P+V T + L+  F       
Sbjct: 256 RQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVN 315

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLK 580
               LF+ + + GV+P+A  +  LI AYCK             + +  + P+ +T   L 
Sbjct: 316 EAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLI 375

Query: 581 KSLWKEGRRKEA 592
             L ++G  K A
Sbjct: 376 AGLCRKGDVKAA 387



 Score = 47.0 bits (110), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 96/228 (42%), Gaps = 26/228 (11%)

Query: 52  SNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQS--TLHALA 109
           S  S  ++S+L D L+  F+    +         L   EA K   ++    S  + + L 
Sbjct: 77  SGDSFCVNSILADMLVLAFVRNLKI---------LRGFEAFKRAGDYGFKLSLISCNPLL 127

Query: 110 TVLAKSQRNHELKTLIGDISSSKF------LNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           + L K   N +++ +  ++   K        N+ VN +  +   + +GD+   +  W   
Sbjct: 128 SGLVKESENGDMEFVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVS 187

Query: 164 RQRAKLLSTESYNIVMSVYAK---TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
                  +  +YN ++  Y K    GK ++A    ++++ +G  PN  TY ++I+     
Sbjct: 188 P------NVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKD 241

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
             +  A+ VF  +    ++     Y IL+ G     + DEA +L ++M
Sbjct: 242 ENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQM 289



 Score = 46.2 bits (108), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 87/216 (40%), Gaps = 18/216 (8%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           + G   +V     ++  L   G V+    L  ++ S  +     T  ++I+ +  +K  +
Sbjct: 256 RQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVN 315

Query: 459 AALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
            A+  F+D ++    P +     + Y++L+    K  R  DA  +   MI  GI P+V T
Sbjct: 316 EAINLFNDMEKQGVDPNA-----MTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVST 370

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LS 565
           ++ L+     +GD K  + L + +    +  D   + +LI + CK             + 
Sbjct: 371 YNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMF 430

Query: 566 NSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEK 601
              L P   T   L     +EG  + A  V  R E+
Sbjct: 431 EKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMER 466



 Score = 43.1 bits (100), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 8/186 (4%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNP 96
           LID+     R   + +L +++ DR + P + T+      L    +  +A S+M  + S  
Sbjct: 339 LIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKK 398

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVS-VNFMNLMQWYSTSGDLEL 155
             S +  T + L   L K   + +   L+ D    K LN S V +  LM  Y   G+L  
Sbjct: 399 -LSADVVTYNILIDSLCKKGESRKAVKLL-DEMFEKGLNPSHVTYNTLMDGYCREGNLRA 456

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
            L       ++ K  +  ++N+++  +   G+  +A     ++++ G +PN  TY ++ E
Sbjct: 457 ALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEIIKE 516

Query: 216 HLVNLG 221
            ++  G
Sbjct: 517 EMMEKG 522


>gi|297819626|ref|XP_002877696.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323534|gb|EFH53955.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1188

 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 92/225 (40%), Gaps = 42/225 (18%)

Query: 375 LVCKVL-RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
           L+ +VL R   +    + FF W   QPGY H     + M+ IL++      V  LI ++R
Sbjct: 102 LIVRVLSRCGDAGNLGYRFFLWATKQPGYCHSYEVCKSMVKILSKMRQFGAVWGLIEEMR 161

Query: 434 SDGMRL--PFSTIRLIIDF------------------YGISKKA-------DA------- 459
            +   L  P   + LI  F                  YG            DA       
Sbjct: 162 KENPELIEPELFVVLIRRFASANMVKKAVEVLDEMPKYGFEPDEYVFGCLLDALCKNGSV 221

Query: 460 --ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
             A K F D R    P  ++     ++SLL    +  +  +A  VL +M  +G+ PD+  
Sbjct: 222 KDASKVFEDMREKIPPNLRY-----FTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVV 276

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           F+ L+  +A  G       L + +R+ G EP+A  + VLIQA C+
Sbjct: 277 FTNLLSGYAHAGKMADAYDLLNDMRKRGYEPNANCYTVLIQALCR 321



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 87/218 (39%), Gaps = 4/218 (1%)

Query: 63  NDRLLDPFIVTHALRSAPNADSALSIMEALKSNP--NFSHNQSTLHALATVLAKSQRNHE 120
           N  L++P +    +R   +A+     +E L   P   F  ++     L   L K+    +
Sbjct: 164 NPELIEPELFVVLIRRFASANMVKKAVEVLDEMPKYGFEPDEYVFGCLLDALCKNGSVKD 223

Query: 121 LKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS 180
              +  D+      N+   F +L+  +   G L        + ++         +  ++S
Sbjct: 224 ASKVFEDMREKIPPNLRY-FTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLS 282

Query: 181 VYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK-LDSALEVFSALPLMRIK 239
            YA  GK  +A +    +   G  PN+  YTV+I+ L    K +D A+ VF  +     +
Sbjct: 283 GYAHAGKMADAYDLLNDMRKRGYEPNANCYTVLIQALCRTEKRMDEAMRVFVEMERYGCE 342

Query: 240 RTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR 277
                Y  L+ GF      D+  S+L++MR  G  P +
Sbjct: 343 ADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQ 380


>gi|255570073|ref|XP_002525999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534731|gb|EEF36423.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 557

 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 96/450 (21%), Positives = 177/450 (39%), Gaps = 49/450 (10%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V + +L+  Y   G +E    T    R     +   S+N + + + K  K  E V  +  
Sbjct: 8   VTYNSLIDGYCKYGQVEEACLTIKRIRNAECRVDLVSFNALFNGFCKR-KMKEEVFIYMG 66

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++ +  +PN  TY   I+ L  +G LD+  + F  +    I      +  L++G+  +  
Sbjct: 67  LMWKCCLPNVITYGTWIDTLCKVGDLDTGYKFFKEMRKDGIVPNLIAFTCLIDGYSKIGN 126

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
            D A  L  +M      P      AL     + G ++ A  F  +ML    + N   Y  
Sbjct: 127 LDFAYQLYKDMCKSMHLPNVYTYAALINGFCKRGMLERAEWFFLKMLEVGIMPNSTVYTS 186

Query: 317 GSDDDEDENDDNN-----SGVR--------IAYGVQLKPWLDPKALANTLDEWSPEVVSL 363
             D    + + +      S +R        +AYGV +   ++   L   L+     V + 
Sbjct: 187 IIDGHFKKGNIDVAMKYFSEMRKESFRLDIVAYGVVISGLVNNGRLDKVLEVMEDMVRNG 246

Query: 364 LADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAY-QPGYTHDVYALEKMLTILARHGHV 422
           LA  K V TT +      HFK+  T   +  +      G+  D   +  ++  L + G  
Sbjct: 247 LAPDKVVLTTLM----HAHFKAGNTKAAYGVYRELLNRGFEPDAVTISSLIDGLCKDGRY 302

Query: 423 ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA----------DAALKAFHDDRTLCG 472
                   K +++ +     +   +ID  GI K+           + +   F  D+    
Sbjct: 303 HDAKGYFCKEKANEV-----SYTALID--GICKEGNLDEVERVVMEMSESGFVPDK---- 351

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
                    +Y+S +  L +  +  +A  V  +M+  GI  D+ T+S L++  A +G   
Sbjct: 352 --------FVYTSWIAELCRQGKIVEAFKVKNKMVEEGIDLDLLTYSSLIFGLANKGLMI 403

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
             ++LF  + + G+ PD+ +F +LI+ Y K
Sbjct: 404 EAKQLFDDMLKRGIIPDSMVFDILIRGYLK 433



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 98/243 (40%), Gaps = 7/243 (2%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + HA   A N  +A  +   L  N  F  +  T+ +L   L K  R H+ K       ++
Sbjct: 257 LMHAHFKAGNTKAAYGVYREL-LNRGFEPDAVTISSLIDGLCKDGRYHDAKGYFCKEKAN 315

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
           +     V++  L+      G+L+ V     E  +   +     Y   ++   + GK  EA
Sbjct: 316 E-----VSYTALIDGICKEGNLDEVERVVMEMSESGFVPDKFVYTSWIAELCRQGKIVEA 370

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
            +   ++++EG   +  TY+ +I  L N G +  A ++F  +    I   S  + IL+ G
Sbjct: 371 FKVKNKMVEEGIDLDLLTYSSLIFGLANKGLMIEAKQLFDDMLKRGIIPDSMVFDILIRG 430

Query: 252 FVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNV 311
           ++  +       L  EMR  G      + ++  R Q   F+     +++   P   IK  
Sbjct: 431 YLKQDNPVAISHLHEEMRRRGLLTIDKITISF-RNQTEEFVSKQESYVQRPCPSNYIKRK 489

Query: 312 RYY 314
           + Y
Sbjct: 490 QKY 492


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 92/441 (20%), Positives = 180/441 (40%), Gaps = 29/441 (6%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
            +N +  + +S  + L  + + ++ +    ++T S+NI++       +  EA+    ++ 
Sbjct: 165 LLNALVRFPSSHSIRLSKAVFTDFIKIGVKINTNSFNILIHGSCMENRFGEAIRVLGKMR 224

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           D G  P++ TY  +++ L   G+L+ A ++   +    +      + ILV G   +    
Sbjct: 225 DYGCPPDNITYNTILDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLK 284

Query: 260 EAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREM-----LPDKRIKNV-- 311
           EA +++  M  +   P      V +    + G I  A     EM      PD    N   
Sbjct: 285 EAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLI 344

Query: 312 -RYYEDGSDDD-----EDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLA 365
              +E GS ++     E+          + Y V +K W   K   + +D+   ++     
Sbjct: 345 NGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVK-WFVKKGKMDEVDKTVRKMEESGC 403

Query: 366 DAKFVWTTRLV---CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHV 422
               V    L+   CKV +     + A+     +  + G   D   L  ML  L R   +
Sbjct: 404 LPDIVTYNTLISWHCKVGKM----DEAFRLMDEMG-RKGLKMDDVTLNTMLRALCRERKL 458

Query: 423 ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLL 482
           +    L+   R  G  +   +   +I  Y   +KA  AL+ + + +           ++ 
Sbjct: 459 DEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEK----EIIPSIIT 514

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD-EKIVQKLFSMV 541
           Y+S++  L +  +   AI+ L+E++ SG+VPD  T++ +++ +  +G  EK  Q    MV
Sbjct: 515 YNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMV 574

Query: 542 RQNGVEPDAYMFKVLIQAYCK 562
            +N  +PD      L+   CK
Sbjct: 575 EKN-FKPDVVTCNTLLCGLCK 594



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 12/132 (9%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           + Y+++L  L K  R  +A ++L +M   G+ P+  TF+ L+      G  K    +  +
Sbjct: 233 ITYNTILDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIEL 292

Query: 541 VRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGR 588
           + QN V PDA+ + V+I  +CK             + N  L PD  T   L    ++ G 
Sbjct: 293 MSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGS 352

Query: 589 RKEAAAVEERCE 600
            +E   + E  E
Sbjct: 353 SEEGFKLIEEME 364



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 68/171 (39%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T + + +   K  R  E   L  ++ + K     V +  L+      G  E       E 
Sbjct: 304 TYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEM 363

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
             R    ++ +YN+++  + K GK  E  +T R++ + G +P+  TY  +I     +GK+
Sbjct: 364 EGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKM 423

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
           D A  +   +    +K        ++       + DEA  LL   R  G F
Sbjct: 424 DEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYF 474



 Score = 45.8 bits (107), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 35/191 (18%), Positives = 78/191 (40%), Gaps = 1/191 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A  +M+ +        +  TL+ +   L + ++  E   L+       +    V++  
Sbjct: 424 DEAFRLMDEM-GRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGT 482

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  Y         L  W+E +++  + S  +YN +++   + GK  +A++   ++++ G
Sbjct: 483 LIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESG 542

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +P+  TY  +I      G+++ A +  + +     K        L+ G       ++A 
Sbjct: 543 LVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKAL 602

Query: 263 SLLNEMRDDGK 273
            L N     GK
Sbjct: 603 KLFNTWISKGK 613



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 52/253 (20%), Positives = 105/253 (41%), Gaps = 15/253 (5%)

Query: 23  SFVRAPFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNA 82
           + VR P ++  ++ L +A   D I++ V+ N+ NS + L++   ++      A+R     
Sbjct: 168 ALVRFPSSH--SIRLSKAVFTDFIKIGVKINT-NSFNILIHGSCMENRF-GEAIR----- 218

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
              L  M      P+      T + +   L K  R +E + L+ D+ +         F  
Sbjct: 219 --VLGKMRDYGCPPD----NITYNTILDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNI 272

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+      G L+   +      Q + +    +YN+++S + K G+  EA+    ++ +  
Sbjct: 273 LVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLK 332

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  TY  +I      G  +   ++   +    +K  S  Y ++V+ FV   + DE  
Sbjct: 333 LSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVD 392

Query: 263 SLLNEMRDDGKFP 275
             + +M + G  P
Sbjct: 393 KTVRKMEESGCLP 405



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 12/124 (9%)

Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           +AI VL +M   G  PD  T++ ++     +G     + L   ++  G+ P+   F +L+
Sbjct: 215 EAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILV 274

Query: 558 QAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDV 605
              C+             +S ++++PDA T  ++     K+GR  EA  + E  E +   
Sbjct: 275 VGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLS 334

Query: 606 PSLA 609
           P + 
Sbjct: 335 PDVV 338


>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Glycine max]
          Length = 693

 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/247 (21%), Positives = 102/247 (41%), Gaps = 18/247 (7%)

Query: 79  APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV 138
           A N + A  +M  + +   FS N  T +A+   L K  R  E   ++     +      V
Sbjct: 391 AGNFERAYELMNVM-NEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKV 449

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
            +  L+  +    +++  L  +N+  +        SY  +++V+ +  +  E+   F + 
Sbjct: 450 TYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFEEA 509

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
           +  G +P ++TYT MI      G L  AL+ F  +        S  Y  L+ G     + 
Sbjct: 510 VRFGLVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGALISGLCKQSKL 569

Query: 259 DEAKSLLNEMRDDGKFPGRAMRVA-----------------LERMQEMGFIQGANEFLRE 301
           DEA+ L + M + G  P    RV                  LER+++  +++  N  +R+
Sbjct: 570 DEARCLYDAMIEKGLTPCEVTRVTLAYEYCKIDDGCSAMVVLERLEKKLWVRTVNTLVRK 629

Query: 302 MLPDKRI 308
           +  ++++
Sbjct: 630 LCSERKV 636



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 92/488 (18%), Positives = 186/488 (38%), Gaps = 49/488 (10%)

Query: 86  LSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI------GDISSSKFLNVSVN 139
           ++   +L SN NF      +  +    A+  R  E   ++      G   S+K LN  V 
Sbjct: 116 IACAASLISNKNFEKAHEVMQCMVKSFAEIGRVKEAIEMVIEMHNQGLAPSTKTLNWVVK 175

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
            +  M      G +E   + ++E   R    +  SY +++  Y K G   E+      +I
Sbjct: 176 IVTEM------GLVEYAENLFDEMCARGVQPNCVSYRVMVVGYCKLGNVLESDRWLGGMI 229

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           + G + ++ T ++++      G +  AL  F     M ++     +  ++EG        
Sbjct: 230 ERGFVVDNATLSLIVREFCEKGFVTRALWYFRRFCEMGLRPNLINFTCMIEGLCKRGSVK 289

Query: 260 EAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANE-FLREMLPDKRIKNVRYYE-- 315
           +A  +L EM   G  P      AL + + + G+ + A   FL+ +  +    NV  Y   
Sbjct: 290 QAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAM 349

Query: 316 -DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTR 374
             G   DE  N              L   +  + LA   + ++  +        F     
Sbjct: 350 ISGYCRDEKMNRAE----------MLLSRMKEQGLAPNTNTYTTLIDGHCKAGNF----- 394

Query: 375 LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
                       E A+     V  + G++ +V     ++  L + G V+   +++     
Sbjct: 395 ------------ERAYELM-NVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFR 441

Query: 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCK 494
           +G+     T  ++I  +    +   AL  F  ++ +   I     +  Y++L+    + K
Sbjct: 442 NGLDADKVTYTILISEHCKQAEIKQALVLF--NKMVKSGIQPD--IHSYTTLIAVFCREK 497

Query: 495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK 554
           R  ++    EE +  G+VP  +T++ ++  +  +G+ ++  K F  +  +G   D+  + 
Sbjct: 498 RMKESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYG 557

Query: 555 VLIQAYCK 562
            LI   CK
Sbjct: 558 ALISGLCK 565


>gi|449465535|ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Cucumis sativus]
          Length = 542

 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 105/249 (42%), Gaps = 24/249 (9%)

Query: 360 VVSLLADAKFVWTTRLVCKVLRHFKSPE-TAWHFFCWVAYQPGYTHDVYALEKMLTILAR 418
           + SLL  A    +  L+ +VL+   +    A  FF W   Q G+ H   +   ++  L +
Sbjct: 109 IESLLDGAPMELSPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGK 168

Query: 419 HGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFK 478
                ++  L++ ++  G+ L   T  LI   Y  ++K   A+++F         + KF 
Sbjct: 169 IKQFNVIWNLVSDMKRKGI-LSRETFALITRRYARARKVKEAVESFEK-------MEKFG 220

Query: 479 LMLL---YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ 535
             +    ++ LL TL K +    A  V ++M      PD+++++ L+  +    +   + 
Sbjct: 221 FQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFKPDIKSYTILLEGWGQDQNLLKLN 280

Query: 536 KLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSL 583
           +++  +R  G EPD   F +LI A+CK             +   N+ P       L   L
Sbjct: 281 EVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCTLINGL 340

Query: 584 WKEGRRKEA 592
             E R KEA
Sbjct: 341 GSEKRLKEA 349



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 1/104 (0%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN V+  Y  + K   A     ++   G  PNSRTY +++ HL+   K   A  VF  +
Sbjct: 367 TYNAVVGAYCWSMKMAYAYRMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRM 426

Query: 234 PLM-RIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
                 + T   Y I++  F   ER D A  + +EM+  G  PG
Sbjct: 427 SREPGCEPTLSTYDIMIRMFCNEERVDMAIQIWDEMKAKGVLPG 470



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 39/229 (17%)

Query: 50  VRSNSSNSLSSLLNDRLLD--PFIVTHALRSAPNADS-ALSIMEALKSNPNFSHNQSTLH 106
           +  N ++ + SLL+   ++  P ++   L+   NA   ALS     +    F H   + +
Sbjct: 101 ISKNPNSCIESLLDGAPMELSPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYN 160

Query: 107 ALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR 166
            L   L K ++ + +  L+ D+                                    +R
Sbjct: 161 LLIEALGKIKQFNVIWNLVSDM------------------------------------KR 184

Query: 167 AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
             +LS E++ ++   YA+  K  EAVE+F ++   G       +  +++ L     +  A
Sbjct: 185 KGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKA 244

Query: 227 LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            EVF  +   R K   K Y IL+EG+   +   +   +  EMRD+G  P
Sbjct: 245 QEVFDKMKHGRFKPDIKSYTILLEGWGQDQNLLKLNEVYREMRDEGFEP 293



 Score = 42.7 bits (99), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 45/230 (19%), Positives = 90/230 (39%), Gaps = 7/230 (3%)

Query: 56  NSLSSLLNDRLLDPFIVT-----HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALAT 110
           N +   + D   +P +VT     +A   A   D A+ +   +++  N   +      L  
Sbjct: 280 NEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAK-NIKPSPHVFCTLIN 338

Query: 111 VLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLL 170
            L   +R  E       +  S F   +  +  ++  Y  S  +       +E R+     
Sbjct: 339 GLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSGVGP 398

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDE-GAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           ++ +Y+I++    K  K+ EA   F+++  E G  P   TY +MI    N  ++D A+++
Sbjct: 399 NSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFCNEERVDMAIQI 458

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM 279
           +  +    +      +  L+       + ++A +   EM D G  P   M
Sbjct: 459 WDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQEMLDVGIRPPATM 508



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 35/179 (19%), Positives = 72/179 (40%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
            F    S  + L   L KS+   + + +   +   +F     ++  L++ +    +L  +
Sbjct: 220 GFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFKPDIKSYTILLEGWGQDQNLLKL 279

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
              + E R         ++ I+++ + K  K  EA+  F ++  +   P+   +  +I  
Sbjct: 280 NEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCTLING 339

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           L +  +L  ALE F  L L      +  Y  +V  +    +   A  +++EMR  G  P
Sbjct: 340 LGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSGVGP 398


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 91/210 (43%), Gaps = 7/210 (3%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           L+D F   + L  A   +  + +M +   +PN      T + L     K+ R  +   L 
Sbjct: 472 LIDGFCKENHLDKA---NQMVDLMVSKGCDPNIR----TFNILINGYCKANRIDDGLELF 524

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
             +S    +  +V +  L+Q +   G L +    + E   R    +  +Y I++      
Sbjct: 525 RKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDN 584

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
           G++ +A+E F ++       +   Y ++I  + N  K+D A ++F +LPL  +K   K Y
Sbjct: 585 GESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTY 644

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            I++ G        EA+ L  +M +DG  P
Sbjct: 645 NIMIGGLCKKGPLSEAELLFRKMEEDGHAP 674



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 84/181 (46%), Gaps = 2/181 (1%)

Query: 127 DISSSKFLNVSVNFMN-LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
           D+  SK  + ++   N L+  Y  +  ++  L  + +   R  +  T +YN ++  + + 
Sbjct: 490 DLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCEL 549

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
           GK   A E F++++     PN  TY ++++ L + G+ + ALE+F  +   +++     Y
Sbjct: 550 GKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIY 609

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLP 304
            I++ G     + D+A  L   +   G  PG +   + +  + + G +  A    R+M  
Sbjct: 610 NIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEE 669

Query: 305 D 305
           D
Sbjct: 670 D 670



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 82/203 (40%), Gaps = 1/203 (0%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T   +  V+ KS +      L+  +        +V +  ++      G L+   + +
Sbjct: 325 NAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLF 384

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           NE   +    +  +YNI++  +   G+  +  +  R +I     PN  T++V+I+  V  
Sbjct: 385 NEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKE 444

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAM 279
           GKL  A E+   +    I   +  Y  L++GF      D+A  +++ M   G  P  R  
Sbjct: 445 GKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTF 504

Query: 280 RVALERMQEMGFIQGANEFLREM 302
            + +    +   I    E  R+M
Sbjct: 505 NILINGYCKANRIDDGLELFRKM 527



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 104/533 (19%), Positives = 213/533 (39%), Gaps = 60/533 (11%)

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L  D+  S+ L   ++F  L    + +   +LVL+   +   +    +  + +I+++ + 
Sbjct: 173 LFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFC 232

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           +  K   A     ++I  G  PN+ T++ +I  L   G++  ALE+   +  M  K    
Sbjct: 233 RCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLI 292

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
               LV G     +  EA  L+++M + G  P        L  M + G    A E LR+ 
Sbjct: 293 TINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRK- 351

Query: 303 LPDKRIK--NVRY-------YEDGSDDDEDE--NDDNNSGVR---IAYGVQLKP------ 342
           + ++ IK   V+Y        + GS D+     N+    G+    I Y + +        
Sbjct: 352 MEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGR 411

Query: 343 WLDPKALANTL--DEWSPEVV--SLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAY 398
           W D   L   +   + +P VV  S+L D+ FV   +L      H +              
Sbjct: 412 WDDGAKLLRDMIKRKINPNVVTFSVLIDS-FVKEGKLREAEELHKE------------MI 458

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
             G   D      ++    +  H++  ++++  + S G      T  ++I+ Y  + + D
Sbjct: 459 HRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRID 518

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
             L+ F    +L G ++     + Y++L++   +  +   A  + +EM+   + P++ T+
Sbjct: 519 DGLELFRK-MSLRGVVAD---TVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTY 574

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSN 566
             L+      G+ +   ++F  + ++ +E D  ++ ++I   C              L  
Sbjct: 575 KILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPL 634

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP-----SLALRGHI 614
             + P   T  ++   L K+G   EA  +  + E+    P     ++ +R H+
Sbjct: 635 KGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHL 687



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 80/198 (40%), Gaps = 1/198 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+   L    + D+A ++   ++     + N  T + L      + R  +   L+ D+  
Sbjct: 366 IIIDGLCKHGSLDNAFNLFNEMEMK-GITTNIITYNILIGGFCNAGRWDDGAKLLRDMIK 424

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
            K     V F  L+  +   G L        E   R     T +Y  ++  + K     +
Sbjct: 425 RKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDK 484

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A +    ++ +G  PN RT+ ++I       ++D  LE+F  + L  +   +  Y  L++
Sbjct: 485 ANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQ 544

Query: 251 GFVGVERFDEAKSLLNEM 268
           GF  + + + AK L  EM
Sbjct: 545 GFCELGKLNVAKELFQEM 562



 Score = 46.6 bits (109), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 35/176 (19%), Positives = 73/176 (41%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
             +HN  TL  +     + ++     + +G I    +   ++ F  L+      G +   
Sbjct: 216 GIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEA 275

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           L   +   +        + N +++    +GK  EA+    ++++ G  PN+ TY  ++  
Sbjct: 276 LELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNV 335

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +   G+   A+E+   +    IK  + +Y I+++G       D A +L NEM   G
Sbjct: 336 MCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKG 391


>gi|255558584|ref|XP_002520317.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540536|gb|EEF42103.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 439

 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 105/242 (43%), Gaps = 38/242 (15%)

Query: 67  LDPFIVTHALRSAPNAD-SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           + P IV   LR   NA   A    E  +   +++H+    H +   LAK ++   +  LI
Sbjct: 20  VSPEIVEDVLRRFENAGMVAYRFFEWAEKQLHYTHSVRAYHTMIESLAKIRQYQIMWDLI 79

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWN------------------------ 161
             +   + LNV   F  +M+ Y+ +  LE  + T+N                        
Sbjct: 80  NAMKRKRMLNVE-TFCIIMRKYARAQKLEEAVYTFNVMEKYDVPPNLAAFNGLFSALCKS 138

Query: 162 -EYRQRAKLL---------STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT 211
              R+  ++           +++Y I++  + KT    +A E FR+++D G  P+  TY 
Sbjct: 139 KNVRKAQEIFDSSKDRFVPDSKTYTILLEGWGKTPNLPKAREIFREMVDVGCSPDIVTYG 198

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE-RFDEAKSLLNEMRD 270
           +M++ L   G++D AL++   + L   K TS  Y +L+  + G+E R ++A      M  
Sbjct: 199 IMVDILCKAGRVDEALDIVKEMDLTICKPTSFIYSVLIHTY-GIENRIEDAVDTFLGMEK 257

Query: 271 DG 272
           +G
Sbjct: 258 NG 259



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 11/194 (5%)

Query: 372 TTRLVCKVLRHFKSPE-TAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIA 430
           +  +V  VLR F++    A+ FF W   Q  YTH V A   M+  LA+    +++  LI 
Sbjct: 21  SPEIVEDVLRRFENAGMVAYRFFEWAEKQLHYTHSVRAYHTMIESLAKIRQYQIMWDLIN 80

Query: 431 KLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRT- 489
            ++   M L   T  +I+  Y  ++K + A+  F+       P +      L+S+L ++ 
Sbjct: 81  AMKRKRM-LNVETFCIIMRKYARAQKLEEAVYTFNVMEKYDVPPNLAAFNGLFSALCKSK 139

Query: 490 -LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548
            + K +  FD+            VPD +T++ L+  +    +    +++F  +   G  P
Sbjct: 140 NVRKAQEIFDSSK-------DRFVPDSKTYTILLEGWGKTPNLPKAREIFREMVDVGCSP 192

Query: 549 DAYMFKVLIQAYCK 562
           D   + +++   CK
Sbjct: 193 DIVTYGIMVDILCK 206



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 1/111 (0%)

Query: 165 QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
           +R ++L+ E++ I+M  YA+  K  EAV TF  +      PN   +  +   L     + 
Sbjct: 83  KRKRMLNVETFCIIMRKYARAQKLEEAVYTFNVMEKYDVPPNLAAFNGLFSALCKSKNVR 142

Query: 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            A E+F +    R    SK Y IL+EG+       +A+ +  EM D G  P
Sbjct: 143 KAQEIFDS-SKDRFVPDSKTYTILLEGWGKTPNLPKAREIFREMVDVGCSP 192



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 43/243 (17%), Positives = 92/243 (37%), Gaps = 17/243 (6%)

Query: 77  RSAPNADSALSIMEALKSNPNF---------------SHNQSTLHALATVLAKSQRNHEL 121
           R  P++ +   ++E     PN                S +  T   +  +L K+ R  E 
Sbjct: 154 RFVPDSKTYTILLEGWGKTPNLPKAREIFREMVDVGCSPDIVTYGIMVDILCKAGRVDEA 213

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
             ++ ++  +     S  +  L+  Y     +E  + T+    +        +YN ++  
Sbjct: 214 LDIVKEMDLTICKPTSFIYSVLIHTYGIENRIEDAVDTFLGMEKNGVKADVAAYNALIGA 273

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
           + K  K         ++  +G  PNSRT  +++ +L+  G+ D A  VF  + +   +  
Sbjct: 274 FCKVNKFKNVYRVLNEMDYKGMQPNSRTLNIILNNLIARGETDEAFRVFRRM-IKVCEPD 332

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLR 300
           +  Y ++++ F      + A  +   M+     P      V +  + E G +  A   L 
Sbjct: 333 ADTYTMMIKMFCERNELEMALKVWKYMKKKHFVPSMHTFSVLINGLCEEGDVSHACVMLE 392

Query: 301 EML 303
           +M+
Sbjct: 393 DMI 395



 Score = 39.7 bits (91), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 65/148 (43%), Gaps = 16/148 (10%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y  ++  L K  R  +A+++++EM  +   P    +S L++ + ++   +     F 
Sbjct: 194 IVTYGIMVDILCKAGRVDEALDIVKEMDLTICKPTSFIYSVLIHTYGIENRIEDAVDTFL 253

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEG 587
            + +NGV+ D   +  LI A+CK             +    + P++ T  ++  +L   G
Sbjct: 254 GMEKNGVKADVAAYNALIGAFCKVNKFKNVYRVLNEMDYKGMQPNSRTLNIILNNLIARG 313

Query: 588 RRKEAAAVEER----CEKINDVPSLALR 611
              EA  V  R    CE   D  ++ ++
Sbjct: 314 ETDEAFRVFRRMIKVCEPDADTYTMMIK 341


>gi|359492357|ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Vitis vinifera]
          Length = 476

 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 94/203 (46%), Gaps = 3/203 (1%)

Query: 67  LDPFIVTHALRSAPNADS-ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           + P +V + L+   NA   A    E      N++H+    H +   LAK ++   +  L+
Sbjct: 41  VSPIVVENVLKRFENAGMLAYQFFEWAGKQRNYTHSIRAYHTMIESLAKIRQYQIMWDLV 100

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
             + S K LNV   F  +M+ Y+ S  ++  + T+N   +     +  ++N ++S   K+
Sbjct: 101 NKMRSLKILNVE-TFCIIMRKYARSQKVKEAVYTFNIMEKYDVPPNLAAFNSLLSALCKS 159

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
               +A E F  + D+  IP+S+TY++++E       L  A E+F  +  M        Y
Sbjct: 160 KNVVKAQEIFNGMKDQ-FIPDSKTYSILLEGWGKAPNLPKAREIFREMVDMGCDPDIVTY 218

Query: 246 LILVEGFVGVERFDEAKSLLNEM 268
            I+V+      R DEA  ++ EM
Sbjct: 219 GIMVDILCKAGRVDEAVGIVKEM 241



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 89/189 (47%), Gaps = 15/189 (7%)

Query: 379 VLRHFKSPET-AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM 437
           VL+ F++    A+ FF W   Q  YTH + A   M+  LA+    +++  L+ K+RS  +
Sbjct: 49  VLKRFENAGMLAYQFFEWAGKQRNYTHSIRAYHTMIESLAKIRQYQIMWDLVNKMRSLKI 108

Query: 438 RLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDF 497
            L   T  +I+  Y  S+K   A+  F+       P +    +  ++SLL  L K K   
Sbjct: 109 -LNVETFCIIMRKYARSQKVKEAVYTFNIMEKYDVPPN----LAAFNSLLSALCKSKNVV 163

Query: 498 DAINVLEEMIFSGI----VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
            A     + IF+G+    +PD +T+S L+  +    +    +++F  +   G +PD   +
Sbjct: 164 KA-----QEIFNGMKDQFIPDSKTYSILLEGWGKAPNLPKAREIFREMVDMGCDPDIVTY 218

Query: 554 KVLIQAYCK 562
            +++   CK
Sbjct: 219 GIMVDILCK 227



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 69/144 (47%), Gaps = 7/144 (4%)

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           NE   +    ++ + NI+++     G   EA   FR++I +   P++ TYT+MI+     
Sbjct: 309 NEMDCKGIRPNSRTCNIILNSLISCGDTDEAFRVFRRMI-KVCDPDADTYTMMIKMFCEN 367

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR 280
            KL+ AL+V+  + L +   +   + +L+ G        +A  LL EM + G  P     
Sbjct: 368 DKLEMALKVWKYMRLKQFVPSMHTFSVLINGLCKKGNASKACILLEEMIEKGIRPS---S 424

Query: 281 VALERMQEMGFIQGAN---EFLRE 301
           V   +++++   +G     EFL+E
Sbjct: 425 VTFGKLKQLLIKEGREDVLEFLQE 448



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 42/202 (20%), Positives = 82/202 (40%), Gaps = 8/202 (3%)

Query: 71  IVTHALRSAPNADSALSI---MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD 127
           I+      APN   A  I   M  +  +P+      T   +  +L K+ R  E   ++ +
Sbjct: 185 ILLEGWGKAPNLPKAREIFREMVDMGCDPDIV----TYGIMVDILCKAGRVDEAVGIVKE 240

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           + SS     S  +  L+  Y     +E  + T+ +  +         YN ++  + K  K
Sbjct: 241 MDSSVCKPTSFIYSVLVHTYGIENRIEDAVYTFLDMERNEIEADVAVYNALIGAFCKVNK 300

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
              A     ++  +G  PNSRT  +++  L++ G  D A  VF  + +      +  Y +
Sbjct: 301 LKNAYRVLNEMDCKGIRPNSRTCNIILNSLISCGDTDEAFRVFRRM-IKVCDPDADTYTM 359

Query: 248 LVEGFVGVERFDEAKSLLNEMR 269
           +++ F   ++ + A  +   MR
Sbjct: 360 MIKMFCENDKLEMALKVWKYMR 381



 Score = 42.4 bits (98), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 86/220 (39%), Gaps = 6/220 (2%)

Query: 85  ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
             +IME     PN +   S L AL     KS+   + + +   +   +F+  S  +  L+
Sbjct: 133 TFNIMEKYDVPPNLAAFNSLLSALC----KSKNVVKAQEIFNGMKD-QFIPDSKTYSILL 187

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204
           + +  + +L      + E           +Y I++ +  K G+  EAV   +++      
Sbjct: 188 EGWGKAPNLPKAREIFREMVDMGCDPDIVTYGIMVDILCKAGRVDEAVGIVKEMDSSVCK 247

Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL 264
           P S  Y+V++       +++ A+  F  +    I+     Y  L+  F  V +   A  +
Sbjct: 248 PTSFIYSVLVHTYGIENRIEDAVYTFLDMERNEIEADVAVYNALIGAFCKVNKLKNAYRV 307

Query: 265 LNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREML 303
           LNEM   G  P  R   + L  +   G    A    R M+
Sbjct: 308 LNEMDCKGIRPNSRTCNIILNSLISCGDTDEAFRVFRRMI 347


>gi|357166784|ref|XP_003580849.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Brachypodium distachyon]
          Length = 904

 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 80/152 (52%), Gaps = 6/152 (3%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH-DDRTL 470
           ++    + G+++   R++ K++ + M+      R II+ + ++     AL       R+ 
Sbjct: 520 LIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALNILDLMRRSG 579

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
           C P      ++ Y++L+  L K  +   A++VL +M  +GI P+  T++ +M  +A  GD
Sbjct: 580 CAPT-----VMTYNALIHGLIKKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAANGD 634

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
                + F+ +++ G++ D Y+++ L++A CK
Sbjct: 635 IGKAFEYFTKIKEGGLKLDVYIYETLLRACCK 666



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 63/139 (45%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  L++    SG ++  L+   E   +    +T  YNI++  +A+ G  +EA +  +Q+ 
Sbjct: 657 YETLLRACCKSGRMQSALAVTREMSTQKIARNTFVYNILIDGWARRGDVWEAADLMKQMK 716

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           ++G  PN  TYT  I      G +  A +V   +  + +K   K Y  L++G+      D
Sbjct: 717 EDGVPPNIHTYTSYINACCKAGDMQRAQKVIEEMADVGLKPNLKTYTTLIKGWAKASLPD 776

Query: 260 EAKSLLNEMRDDGKFPGRA 278
            A     EM+  G  P  A
Sbjct: 777 RALKSFEEMKLAGLKPDEA 795



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 84/188 (44%), Gaps = 8/188 (4%)

Query: 120 ELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM 179
           E K  +GD++        + + N++  +  SG+++       E  +       ++Y+ +M
Sbjct: 364 EAKAKLGDLNG-------IIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDAYHSMM 416

Query: 180 SVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIK 239
             Y       + +  F ++ +    P+  +Y  +I   + +GK+  A+ +   +    IK
Sbjct: 417 HGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLINLYIKIGKVTKAIAISKEMESYGIK 476

Query: 240 RTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEF 298
             +K Y +L+ GF+ +  F  A S+  EM   G  P RA+  + +E   +MG +  A   
Sbjct: 477 HNNKTYSMLISGFIHLHDFANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRI 536

Query: 299 LREMLPDK 306
           L +M  ++
Sbjct: 537 LEKMQKER 544



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y I+M  YA  G   +A E F ++ + G   +   Y  ++      G++ SAL V   +
Sbjct: 621 TYTIIMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREM 680

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              +I R +  Y IL++G+       EA  L+ +M++DG  P
Sbjct: 681 STQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPP 722



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 67/143 (46%), Gaps = 4/143 (2%)

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL 479
           G+++  + L+ ++  DG+  P      ++  Y I +     L  F   +  C   S    
Sbjct: 388 GNMDRAEELVREMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPS---- 443

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y  L+    K  +   AI + +EM   GI  + +T+S L+  F    D      +F 
Sbjct: 444 IISYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHLHDFANAFSIFE 503

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK 562
            + ++G++PD  ++ +LI+A+CK
Sbjct: 504 EMLKSGLQPDRAIYNLLIEAFCK 526



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 70/146 (47%), Gaps = 1/146 (0%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           + ++M  Y+   D +  L  +   ++     S  SY  ++++Y K GK  +A+   +++ 
Sbjct: 412 YHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLINLYIKIGKVTKAIAISKEME 471

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
             G   N++TY+++I   ++L    +A  +F  +    ++     Y +L+E F  +   D
Sbjct: 472 SYGIKHNNKTYSMLISGFIHLHDFANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMD 531

Query: 260 EAKSLLNEMRDDGKFPG-RAMRVALE 284
            A  +L +M+ +   P  RA R  +E
Sbjct: 532 RAIRILEKMQKERMQPSNRAFRPIIE 557



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 26/138 (18%), Positives = 63/138 (45%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           +++  L+  Y   G +   ++   E        + ++Y++++S +        A   F +
Sbjct: 445 ISYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHLHDFANAFSIFEE 504

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++  G  P+   Y ++IE    +G +D A+ +   +   R++ +++ +  ++EGF     
Sbjct: 505 MLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGD 564

Query: 258 FDEAKSLLNEMRDDGKFP 275
              A ++L+ MR  G  P
Sbjct: 565 MKRALNILDLMRRSGCAP 582



 Score = 38.9 bits (89), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 5/155 (3%)

Query: 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT 211
           D + V+S +    +R    S   + +++  YAK G    A  TF  +   G  PN+  +T
Sbjct: 253 DWQAVVSAF----ERIPKPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFT 308

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
            ++        +   L     +    I+ T   Y I++ GF  +     A +L  E +  
Sbjct: 309 SLVHAYAVARDMRGVLSCVEEMKAEGIELTIVTYSIIIAGFAKINDAQSADNLFKEAKAK 368

Query: 272 -GKFPGRAMRVALERMQEMGFIQGANEFLREMLPD 305
            G   G      +    + G +  A E +REM  D
Sbjct: 369 LGDLNGIIYSNIIHAHCQSGNMDRAEELVREMEED 403


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 79/403 (19%), Positives = 160/403 (39%), Gaps = 60/403 (14%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN ++  Y K G+  +A+E   ++ + G  PN  TY V++  L   G+L+ A  +   +
Sbjct: 217 TYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEM 276

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
               +  ++  Y  L+ GF     F EA  L+ EM +   FP  +    L        + 
Sbjct: 277 LNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTL--------MY 328

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTL 353
           G  ++++                             +GVR+ +   LK    P  ++   
Sbjct: 329 GLCKWVQV----------------------------TGVRLRFSDMLKSKFTPDIVSFNS 360

Query: 354 DEWSPEVVSLLADAKFVWTTRLVCK-VLRHFKSPETAWHFFCWVAY------------QP 400
             +       +++A F+    L C+ ++    +  T  H  C   Y              
Sbjct: 361 LLYGYCRTGCISEA-FLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQ 419

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM---RLPFSTIRLIIDFYGISKKA 457
           G   D++    ++    + G+V +      ++ S G+   R  ++T R++    G  K A
Sbjct: 420 GLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNT-RIV----GEMKIA 474

Query: 458 DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
           D ++     +  L         ++ Y+  +  L +     +A ++LE M+  G++PD  T
Sbjct: 475 DTSVAFSMQEEMLAAGFP--PDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVT 532

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
           ++ ++  F   G  +  +++F+ +   GV P    + VLI A+
Sbjct: 533 YTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAH 575



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 2/137 (1%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y  +++ + K G   +A E F +++ +G  P+  TYTV+I        LD A   FS +
Sbjct: 532 TYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKM 591

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
               +      Y  ++ G     R DEA    +EM + G  P + +  + +     MG+ 
Sbjct: 592 LEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYW 651

Query: 293 QGANEFLREMLPDKRIK 309
           + A    REML D++I+
Sbjct: 652 EEALRLYREML-DRKIQ 667



 Score = 45.8 bits (107), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 90/210 (42%), Gaps = 3/210 (1%)

Query: 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
           ST + L   L K  +   ++    D+  SKF    V+F +L+  Y  +G +      ++E
Sbjct: 321 STYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDE 380

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
            + R  + +  +YN ++      G    A+   +++ D+G  P+  TYT+++     LG 
Sbjct: 381 LKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGY 440

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM--R 280
           +  A   F+ +    +K     Y   + G + +     A S+  EM   G FP   +   
Sbjct: 441 VSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAG-FPPDVITYN 499

Query: 281 VALERMQEMGFIQGANEFLREMLPDKRIKN 310
           V +  + + G  + A + L  M+ D  I +
Sbjct: 500 VFVHALCQQGNFEEACDLLENMVSDGLIPD 529



 Score = 43.5 bits (101), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 30/160 (18%), Positives = 75/160 (46%), Gaps = 1/160 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           +  HAL    N + A  ++E + S+     +  T  ++     K+    + + +  ++ S
Sbjct: 500 VFVHALCQQGNFEEACDLLENMVSD-GLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLS 558

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                  V +  L+  ++    L+L    +++  +++   +  +YN +++    T +  E
Sbjct: 559 KGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDE 618

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           A + F ++ ++G +PN  +YT++I    N+G  + AL ++
Sbjct: 619 AYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLY 658



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 88/440 (20%), Positives = 154/440 (35%), Gaps = 92/440 (20%)

Query: 194 TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
            F ++I  G +P+ +    ++  L +   L  A  V+  +    IK T   Y  +++ + 
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226

Query: 254 GVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVR 312
              R D+A  LL+EM++ G +P      V +  + + G ++ A   + EML         
Sbjct: 227 KEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEML--------- 277

Query: 313 YYEDGSDDDEDENDDNNSGVRI-AYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVW 371
                           NSG+ + AY                   ++P +        FV 
Sbjct: 278 ----------------NSGLNVSAY------------------TYNPLINGFCQKGLFVE 303

Query: 372 TTRLVCKVLRHFKSP-----ETAWHFFC-WVAY-----------QPGYTHDVYALEKMLT 414
              LV +++     P      T  +  C WV             +  +T D+ +   +L 
Sbjct: 304 AFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLY 363

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD--DRTLCG 472
              R G +     L  +L+   +     T   +I    +    DAAL+   +  D+ L  
Sbjct: 364 GYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGL-- 421

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
               F  +  Y+ L+    K      A     EM+  G+ PD        Y+  + G+ K
Sbjct: 422 ----FPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPD-----RFAYNTRIVGEMK 472

Query: 533 IVQK--LFSMVRQ---NGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAAT 575
           I      FSM  +    G  PD   + V + A C+             + +  L+PD  T
Sbjct: 473 IADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVT 532

Query: 576 KELLKKSLWKEGRRKEAAAV 595
              +     K G  ++A  V
Sbjct: 533 YTSIINGFVKNGHLRKAREV 552



 Score = 39.3 bits (90), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 18/111 (16%)

Query: 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK---LFSMVRQNGVEPDAYMFKVLIQ 558
           V ++MI +G++PDV+  + ++    +  DE ++ K   ++ M+ Q G++P    +  ++ 
Sbjct: 167 VFDKMIRNGLLPDVKNCNRIL---RVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLD 223

Query: 559 AYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
           +YCK             +      P+  T  +L   L K+G  ++A  + E
Sbjct: 224 SYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIE 274


>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Brachypodium distachyon]
          Length = 938

 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 139/620 (22%), Positives = 229/620 (36%), Gaps = 72/620 (11%)

Query: 31  NKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIME 90
           N L   L RA  +D+ R  V +   + +    N      FIV +  R+A   D A S+ E
Sbjct: 213 NSLVAGLCRAGEVDAARDMVDTMKRDGVEP--NVVTYTMFIVEYCRRNA--VDDAFSLYE 268

Query: 91  ALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS 150
            +        +  TL AL   L K  R  E   L  ++         V +  L+   + +
Sbjct: 269 EM-VRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDTLAKA 327

Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
                 LS   E   R  ++    Y  +M    K GK  EA + FR  + +   PN  TY
Sbjct: 328 QRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTY 387

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
           TV+I+ L   G +D A +V S +    I      +  ++ G V      +A   + EM++
Sbjct: 388 TVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKATDYMREMKE 447

Query: 271 --------------DGKFPGRAMRVALERMQEMGFIQG--ANEFLREMLPDKRIKNVRYY 314
                         DG F       AL+   EM   +G   N+F+ + L +   KN +  
Sbjct: 448 RGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEM-LCEGVEVNKFIVDSLVNGLKKNGKI- 505

Query: 315 EDGSDDDEDENDDNNSGVRIAYGVQLKPWLD--------PKA--LANTLDEWSPEVVSLL 364
                 +    + N  GV + + V     +D        P A  +   L E      +LL
Sbjct: 506 ---EKAEALFREMNERGVLLDH-VNYTTLIDGLFKTGNLPAAFKVGQELTEK-----NLL 556

Query: 365 ADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVEL 424
            DA  V+   + C  +   KS E     F       G   D      M+   +R G    
Sbjct: 557 PDA-VVYNVFINCLCMLG-KSKEA--ESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAK 612

Query: 425 VDRLIAKLRSDGMR---LPFSTIRLIIDFY--GISKKADAALKAFHDDRTLCGPISKFKL 479
             +L+  ++   ++   + +ST  LI+  +  G  +KA   L           P S    
Sbjct: 613 ALKLLNGMKRSSIKPNLITYST--LIVGLFEAGAVEKAKYLLNEMSSSGF--SPTS---- 664

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
            L +  +L+  ++ +R    + + E M+ +G+  D+  ++ L+      G  +    +  
Sbjct: 665 -LTHRRVLQACSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLE 723

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK--YLSNS----------NLMPDAATKELLKKSLWKEG 587
            +   G+ PD   F  LI  + K  +L N+           + P+ AT   L   L   G
Sbjct: 724 EMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAG 783

Query: 588 RRKEAAAVEERCEKINDVPS 607
           R  E+  V    +K    PS
Sbjct: 784 RIGESDMVLNEMKKRGIEPS 803



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 3/135 (2%)

Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
           G+ ++VL   NE ++R    S  +Y+I+++ Y K     EAV  + +++ +G +P   TY
Sbjct: 786 GESDMVL---NEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTY 842

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
             +I     +G +  A E+F+ +    +  TS  Y ILV G+  +    E +  L +M++
Sbjct: 843 NALISDFSKVGMMSQAKELFNEMQNRGVLPTSCTYDILVSGWSKLRNGTEVRKFLKDMKE 902

Query: 271 DGKFPGRAMRVALER 285
            G  P +    ++ R
Sbjct: 903 KGFSPSKGTLSSISR 917



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 12/137 (8%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           ++SL+    K      A  V E M   G+  DV  ++ L+      G+    + +   ++
Sbjct: 177 WNSLVDGYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMK 236

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
           ++GVEP+   + + I  YC+             +    ++PD  T   L   L K+GR  
Sbjct: 237 RDGVEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFS 296

Query: 591 EAAAVEERCEKINDVPS 607
           EA A+    EKI   P+
Sbjct: 297 EAYALFREMEKIGAAPN 313



 Score = 42.0 bits (97), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 8/142 (5%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V + +L+  Y   GD+E   +     + +   +    YN +++   + G+    V+  R 
Sbjct: 175 VGWNSLVDGYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGE----VDAARD 230

Query: 198 VID----EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
           ++D    +G  PN  TYT+ I        +D A  ++  +    +         LV G  
Sbjct: 231 MVDTMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLC 290

Query: 254 GVERFDEAKSLLNEMRDDGKFP 275
              RF EA +L  EM   G  P
Sbjct: 291 KDGRFSEAYALFREMEKIGAAP 312



 Score = 40.4 bits (93), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 41/82 (50%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           L Y  L+    K     +A+ +  EM+  G +P V T++ L+  F+  G     ++LF+ 
Sbjct: 805 LTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKELFNE 864

Query: 541 VRQNGVEPDAYMFKVLIQAYCK 562
           ++  GV P +  + +L+  + K
Sbjct: 865 MQNRGVLPTSCTYDILVSGWSK 886



 Score = 40.0 bits (92), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 1/142 (0%)

Query: 162 EYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG 221
           E   R     T ++N ++  + K+G    A  T+ Q++  G  PN  T+  ++  L + G
Sbjct: 724 EMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAG 783

Query: 222 KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRV 281
           ++  +  V + +    I+ ++  Y ILV G+       EA  L  EM   G  P  +   
Sbjct: 784 RIGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYN 843

Query: 282 AL-ERMQEMGFIQGANEFLREM 302
           AL     ++G +  A E   EM
Sbjct: 844 ALISDFSKVGMMSQAKELFNEM 865


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 115/263 (43%), Gaps = 15/263 (5%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           L+D F+    LR A   D  L  M      PN      T ++L     K  R  E   ++
Sbjct: 339 LIDSFVKEGKLREA---DQLLKEMMQRGIAPN----TITYNSLIDGFCKENRLEEAIQMV 391

Query: 126 GDISSSKFLNVSVNFMN-LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK 184
            D+  SK  +  +   N L+  Y  +  ++  L  + E   R  + +T +YN ++  + +
Sbjct: 392 -DLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQ 450

Query: 185 TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQ 244
           +GK   A + F++++     P+  +Y ++++ L + G+L+ ALE+F  +   +++     
Sbjct: 451 SGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGI 510

Query: 245 YLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQGANEFLREML 303
           Y+I++ G     + D+A  L   +   G K   RA  + +  +     +  A+   R+M 
Sbjct: 511 YMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMT 570

Query: 304 -----PDKRIKNVRYYEDGSDDD 321
                PD+   N+       DDD
Sbjct: 571 EEGHAPDELTYNILIRAHLGDDD 593



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 103/534 (19%), Positives = 206/534 (38%), Gaps = 69/534 (12%)

Query: 46  IRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPN-----ADSALSIMEALKSNPNFSH 100
           +R+ +R  SS + S  +  RLL+   +  AL + PN      +   S      S+ N S+
Sbjct: 2   VRMMIRRLSSQA-SRFVQPRLLETGTLRIALINCPNELLFCCERGFSTF----SDRNLSY 56

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
                  L  + A    +     L  D+  S+ L   ++F  L    + +   ELVL+  
Sbjct: 57  RDKLSSGLVGIKADDAVD-----LFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALC 111

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            +   +    S  + +I+++ + +  K   A  T  +++  G  P++  +  ++  L   
Sbjct: 112 KQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLE 171

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM- 279
            ++  ALE+   +  M  K T      LV G     +  +A  L++ M + G  P     
Sbjct: 172 CRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTY 231

Query: 280 RVALERMQEMGFIQGANEFLREMLPDKRIK--NVRY-------YEDGSDDDEDENDDNNS 330
              L  M + G    A E LR+M  ++ IK   V+Y        +DGS D+         
Sbjct: 232 GPVLNVMCKSGQTALAMELLRKM-EERNIKLDAVKYSIIIDGLCKDGSLDN--------- 281

Query: 331 GVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW 390
                    L   ++ K     +  ++  +       ++    +L+  +++   SP    
Sbjct: 282 ------AFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISP---- 331

Query: 391 HFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF 450
                         +V     ++    + G +   D+L+ ++   G+     T   +ID 
Sbjct: 332 --------------NVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDG 377

Query: 451 YGISKKADAALKAFHDDRTL---CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMI 507
           +    + + A++    D  +   C P      ++ ++ L+    K  R  D + +  EM 
Sbjct: 378 FCKENRLEEAIQMV--DLMISKGCDPD-----IMTFNILINGYCKANRIDDGLELFREMS 430

Query: 508 FSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
             G++ +  T++ L+  F   G  ++ +KLF  +    V PD   +K+L+   C
Sbjct: 431 LRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLC 484



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 6/165 (3%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           + G+  +      +L ++ + G   L   L+ K+    ++L      +IID        D
Sbjct: 221 ETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLD 280

Query: 459 AALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
            A   F++       I  FK  ++ Y++L+       R  D   +L +MI   I P+V T
Sbjct: 281 NAFNLFNE-----MEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVT 335

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           FS L+  F  +G  +   +L   + Q G+ P+   +  LI  +CK
Sbjct: 336 FSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCK 380



 Score = 43.5 bits (101), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 79/207 (38%), Gaps = 36/207 (17%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T + L     K+ R  +   L  ++S    +  +V +  L+Q +  SG LE+    + E 
Sbjct: 405 TFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEM 464

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
             R       SY I++      G+  +A+E F ++       +   Y ++I  + N  K+
Sbjct: 465 VSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKV 524

Query: 224 DSALEVFSALPLMRIKRTSK-----------------------------------QYLIL 248
           D A ++F +LPL  +K  ++                                    Y IL
Sbjct: 525 DDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNIL 584

Query: 249 VEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +   +G +    A  L+ EM+  G FP
Sbjct: 585 IRAHLGDDDATTAAELIEEMKSSG-FP 610


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 81/169 (47%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T  +  + L K  R+ + + +   +++   +   V++  L+  Y+T G    + + ++  
Sbjct: 339 TFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSM 398

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
             +  + +    NI++S +AK G   EA+  F ++  +G  PN  TY+ +I     +G+L
Sbjct: 399 ADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRL 458

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
             A+E FS +  + I+  +  Y  L+ GF       +AK  ++EM   G
Sbjct: 459 ADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKG 507



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 92/479 (19%), Positives = 190/479 (39%), Gaps = 35/479 (7%)

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
           +FM+ +  +  S D E +   +     +  +    SY+I++  YA  G+  +    F  +
Sbjct: 342 SFMSSLCKHGRSKDAEEI---FQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSM 398

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
            D+G + N     ++I      G +D A+ VF+ +    ++     Y  L+  F  + R 
Sbjct: 399 ADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRL 458

Query: 259 DEAKSLLNEMRDDGKFPGRAMRVALERMQEM-GFIQGANEFLREMLPDKRIK-NVRYYED 316
            +A    ++M   G  P  A+  +L     M G +  A EF+ EM+     + N+ ++  
Sbjct: 459 ADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSS 518

Query: 317 ------GSDDDEDENDDNNSGVRIA---YGVQLKPWLDPKALANTLDEWSP---EVVSLL 364
                       D  D  N  + I      V     +D   L   +++       +VS+ 
Sbjct: 519 IIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVG 578

Query: 365 ADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVEL 424
            +   V    LV    +  K  +    F   +  +   T   Y +  +L  L R G    
Sbjct: 579 IEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNI--VLDGLLRAGRTSA 636

Query: 425 VDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS 484
             ++  ++   G  +   T ++++     +   D A+  FH    L     KF + +L +
Sbjct: 637 AKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHK---LGAMDCKFDITIL-N 692

Query: 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544
           +++  L K +R  +A ++   +  SG+VP+V T+  ++ +   +G  +    +FS + ++
Sbjct: 693 TMINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKS 752

Query: 545 GVEPDAYMFKVLIQA------------YCKYLSNSNLMPDAATKELLKKSLWKEGRRKE 591
           G  P + +   +I+             Y   +  + +  +A+T  LL      +G+ +E
Sbjct: 753 GCAPSSRLLNDIIRMLLQKGDIVKAGYYMSKVDGTIISLEASTTSLLMSLFSSKGKHRE 811



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 12/118 (10%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+S++  L K +    A  VL +M+  G+ PD  T++ +++ ++  G  K   K+F  + 
Sbjct: 270 YNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMT 329

Query: 543 QNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGR 588
             G+ PD   F   + + CK            Y++    MPD  +  +L      EGR
Sbjct: 330 SKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGR 387



 Score = 46.2 bits (108), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 14/125 (11%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSG--IVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           Y++++++L    R  +A+++++ M   G    PDV +F+ +++ F  QG+      LF+ 
Sbjct: 198 YNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFNE 257

Query: 541 VRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGR 588
           + Q GV PD   +  ++ A CK             + +  + PD  T   +       G 
Sbjct: 258 MVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGH 317

Query: 589 RKEAA 593
            KE+A
Sbjct: 318 WKESA 322



 Score = 45.4 bits (106), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           +SS + +L K  R  DA  + + M   G +PD+ ++S L++ +A +G    +  LF  + 
Sbjct: 340 FSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMA 399

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
             G+  + +   +LI A+ K             +    + P+  T   L  +  + GR  
Sbjct: 400 DKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLA 459

Query: 591 EA 592
           +A
Sbjct: 460 DA 461



 Score = 43.1 bits (100), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 14/126 (11%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD-EKIVQKLF 538
           ++ +SS++ +L    R  DA +V   +I  G  P + TF+ L+  + L G  EK    L 
Sbjct: 513 IVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLD 572

Query: 539 SMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKE 586
           +MV   G+EPD      L+  YCK             + +  + P   T  ++   L + 
Sbjct: 573 AMV-SVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRA 631

Query: 587 GRRKEA 592
           GR   A
Sbjct: 632 GRTSAA 637



 Score = 39.7 bits (91), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 100/593 (16%), Positives = 197/593 (33%), Gaps = 137/593 (23%)

Query: 118 NHELKTLIGDISSSKFLNVS--------------VNFMNLMQWYSTSGDLELVLSTWNEY 163
           N  +K+L GD  S + L++               V+F  ++  +   G++    + +NE 
Sbjct: 199 NTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFNEM 258

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE-------- 215
            Q+  +    +YN ++    K     +A    RQ++D+G  P+  TY  +I         
Sbjct: 259 VQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHW 318

Query: 216 ---------------------------HLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
                                       L   G+   A E+F  +           Y IL
Sbjct: 319 KESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSIL 378

Query: 249 VEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKR 307
           + G+    RF +  +L + M D G       + + +    + G +  A     EM     
Sbjct: 379 LHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEM----- 433

Query: 308 IKNVRYYEDGSDDDEDENDDNNSGVR---IAYGVQLKPWLDPKALANTLDEWSPEVVSLL 364
                                  GVR   + Y   +  +     LA+ ++++S +++S+ 
Sbjct: 434 --------------------QGQGVRPNVVTYSTLISAFCRMGRLADAMEKFS-QMISIG 472

Query: 365 ADAKFVWTTRLVCKVLRH---FKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGH 421
            +        L+     H    K+ E          ++P    ++     ++  L   G 
Sbjct: 473 IEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRP----NIVFFSSIIHSLCIEGR 528

Query: 422 VELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLML 481
           V     +   +   G R    T   +ID Y +  K + A      D  +   I     ++
Sbjct: 529 VMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVL--DAMVSVGIEPD--VV 584

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
             ++L+    K  +  D + +  EM+   + P   T++ ++      G     +K+F  +
Sbjct: 585 TNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEM 644

Query: 542 RQNGVEPDAYMFKVLIQAYCK--------------------------------------- 562
             +G   D   +K+L++  C+                                       
Sbjct: 645 IDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRR 704

Query: 563 --------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
                    +S S L+P+ +T  ++ ++L KEG  +EA  +    EK    PS
Sbjct: 705 EEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPS 757


>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
 gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 97/448 (21%), Positives = 165/448 (36%), Gaps = 74/448 (16%)

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
            +++   +N  ++    L+  +YN+++    K  +   A +   ++  +G IP++ +YT 
Sbjct: 159 FQMINGIYNNMKRDGIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTT 218

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           ++  +  LGK++ A E+      MRIK     Y  L+ GF    + +E   L NEM  +G
Sbjct: 219 VVSSMCRLGKVEEARELS-----MRIKSFVPVYNALINGFCREHKMEEVFELFNEMAVEG 273

Query: 273 KFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSG 331
             P        +  + EMG ++ A   L +M       NV  +                 
Sbjct: 274 IDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTS--------------- 318

Query: 332 VRIAYGVQLKPWLDPKALANTLDEWS--------PEVVS-------LLADAKFVWTTRLV 376
                   +K +     L   LD W+        P  V+       L +  K V    + 
Sbjct: 319 -------LMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVS 371

Query: 377 CKVLRHFKSP-ETAWHFF---------------CW-VAYQPGYTHDVYALEKMLTILARH 419
            K+ R+   P ET +                   W      G   +V     M+ +L R+
Sbjct: 372 QKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRN 431

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFK 478
                   LI  + +        T    I     S K + A+K  +  R   C P     
Sbjct: 432 SMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPN---- 487

Query: 479 LMLLYSSLLRTLTKCKRDFDAINV---LEEM-IFSGIVPDVQTFSGLMYHFALQGDEKIV 534
            +  Y+ +L  L   KR  +A+ +   +EEM I S +V      SG  +    +G  +I 
Sbjct: 488 -VTTYNEVLDGLFNAKRTREALQIVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIA 546

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            KL       G +PD+  +  +I AYCK
Sbjct: 547 GKLLV----GGTKPDSITYNTVIYAYCK 570



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 74/170 (43%)

Query: 106 HALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQ 165
           +AL     +  +  E+  L  +++        + +  ++   S  G++E+ L+   +   
Sbjct: 247 NALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMFL 306

Query: 166 RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
           R    +  ++  +M  Y   G+  EA++ + ++I EG+ PN+  Y  +I  L + GK+  
Sbjct: 307 RGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVE 366

Query: 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           A+ V   +    +      Y  L++GF        A  + N+M  +G  P
Sbjct: 367 AVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCLP 416



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 44/221 (19%), Positives = 94/221 (42%), Gaps = 16/221 (7%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   DV     ++  L+  G+VE+   ++AK+   G      T   ++  Y +  +   A
Sbjct: 273 GIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEA 332

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           L  +  +R +          + Y++L+  L    +  +A++V ++M  +G+ P+  T+S 
Sbjct: 333 LDLW--NRMI--QEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYST 388

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSN 568
           L+  FA  GD     ++++ +  NG  P+  ++  ++   C+             ++N N
Sbjct: 389 LIDGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGN 448

Query: 569 LMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA 609
             P+  T     K L   G+ + A  V  +  +    P++ 
Sbjct: 449 CPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVT 489



 Score = 46.2 bits (108), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 5/175 (2%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T + L   L K+ R    + L+ ++S    +  +V++  ++      G +E      
Sbjct: 177 NVYTYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVE----EA 232

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            E   R K      YN +++ + +  K  E  E F ++  EG  P+  TY+ +I  L  +
Sbjct: 233 RELSMRIKSF-VPVYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEM 291

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           G ++ AL V + + L         +  L++G+    R  EA  L N M  +G  P
Sbjct: 292 GNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEP 346



 Score = 44.3 bits (103), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 46/219 (21%), Positives = 90/219 (41%), Gaps = 21/219 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   +VY    +L  L ++  V+   +L+A++   G  +P +        Y     +   
Sbjct: 173 GIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGC-IPDAV------SYTTVVSSMCR 225

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           L    + R L   I  F  + +Y++L+    +  +  +   +  EM   GI PDV T+S 
Sbjct: 226 LGKVEEARELSMRIKSF--VPVYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYST 283

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY------CKYLSNSNLM---- 570
           ++   +  G+ ++   + + +   G  P+ + F  L++ Y      C+ L   N M    
Sbjct: 284 VINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEG 343

Query: 571 --PDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
             P+      L   L   G+  EA +V ++ E+    P+
Sbjct: 344 SEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPN 382



 Score = 43.9 bits (102), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 28/139 (20%), Positives = 59/139 (42%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           +V +  L+    + G +   +S   +  +     +  +Y+ ++  +AK G    A E + 
Sbjct: 348 TVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWN 407

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           ++I  G +PN   YT M++ L      + AL +   +        +  +   ++G     
Sbjct: 408 KMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSG 467

Query: 257 RFDEAKSLLNEMRDDGKFP 275
           + + A  +LN+MR  G  P
Sbjct: 468 KTEWAMKVLNQMRQYGCAP 486



 Score = 40.4 bits (93), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 35/187 (18%), Positives = 79/187 (42%), Gaps = 23/187 (12%)

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
           L   G  E   +++ ++R  G     +T   ++D    +K+   AL+       + G I 
Sbjct: 463 LCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQ-------IVGEIE 515

Query: 476 KFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
           + ++   ++ Y+++L           A+ +  +++  G  PD  T++ ++Y +  QG+ K
Sbjct: 516 EMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVIYAYCKQGEVK 575

Query: 533 IVQKLFSMVRQNGVE-PDAYMFKVLIQAYCKYLS------------NSNLMPDAATKELL 579
              +L   + + G   PD + +  L+   C ++             N  + P+ AT   L
Sbjct: 576 TAIQLVDRLTKKGEGYPDVFTYTSLLWGVCNWIGVDEAVVHLDKMINEGICPNRATWNAL 635

Query: 580 KKSLWKE 586
            + L+ +
Sbjct: 636 VRGLFSK 642


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 79/173 (45%), Gaps = 1/173 (0%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T ++L + L K++R  E   L+ ++  S  +     +  L+  +  S   +  L  + + 
Sbjct: 56  TYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQL 115

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA-IPNSRTYTVMIEHLVNLGK 222
             R       +Y+ ++    K G+  EA++ F ++I  G+ +PN+ TY  +I     +GK
Sbjct: 116 VARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGK 175

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +D A+ +   +           Y  L+ GF  + R D+A  LLN+M   G  P
Sbjct: 176 MDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTP 228



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 13/139 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+SL+  L K +R  +A ++LEEM++SG +PD+ T++ L+  F          ++F  + 
Sbjct: 57  YNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLV 116

Query: 543 QNGVEPDAYMFKVLIQAYCK-------------YLSNSNLMPDAATKELLKKSLWKEGRR 589
             G  PD   +  LI   CK              + + + MP+  T   L     + G+ 
Sbjct: 117 ARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKM 176

Query: 590 KEAAAVEERCEKINDVPSL 608
            EA  + ER  +    P +
Sbjct: 177 DEAMNLLERMAETGSSPDV 195



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 40/190 (21%), Positives = 80/190 (42%), Gaps = 2/190 (1%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD-ISSSKFLNVSVNF 140
           +D AL + E L +   F  +  T   L   L K  R  E   L G  I S   +  +V +
Sbjct: 105 SDDALRVFEQLVAR-GFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTY 163

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
            +L+  +   G ++  ++      +        +Y  +M+ + K  +  +A +   Q+  
Sbjct: 164 NSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTR 223

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
           +G  PN  T+T +++ L    +L  A+ +   +       T   Y  +++G+  V + +E
Sbjct: 224 KGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEE 283

Query: 261 AKSLLNEMRD 270
           A+  + E  D
Sbjct: 284 ARKFMLEEMD 293



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/173 (20%), Positives = 75/173 (43%), Gaps = 1/173 (0%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T   L T   KS+++ +   +   + +  F    V +  L+      G L+  +  +   
Sbjct: 91  TYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRM 150

Query: 164 RQRAKLL-STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
            +    + +T +YN ++S + + GK  EA+    ++ + G+ P+  TYT ++     L +
Sbjct: 151 IKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLAR 210

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           LD A ++ + +    +      +  L++G     R  +A  +L EMR     P
Sbjct: 211 LDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSP 263



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 7/164 (4%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D++    ++T   +    +   R+  +L + G R    T   +ID      +   A
Sbjct: 84  GCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEA 143

Query: 461 LKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
           +  F        C P +     + Y+SL+    +  +  +A+N+LE M  +G  PDV T+
Sbjct: 144 IDLFGRMIKSGSCMPNT-----VTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTY 198

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           + LM  F           L + + + G+ P+   F  L+   C+
Sbjct: 199 TTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCR 242


>gi|15228825|ref|NP_188906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274241|sp|Q9LUJ4.1|PP248_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22670, mitochondrial; Flags: Precursor
 gi|9279685|dbj|BAB01242.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643142|gb|AEE76663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 562

 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 113/271 (41%), Gaps = 19/271 (7%)

Query: 351 NTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSP-ETAWHFFCWVAYQPGYTHDVYAL 409
           N  D    +VV  L+    V T  LV +VLR F +    A+ FF W   Q GY H  +  
Sbjct: 110 NKKDTSHEDVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWANSQTGYVHSGHTY 169

Query: 410 EKMLTILARHGHVELVDRLIAKLR--SDGMRLPFSTIRLIIDFYGISKKADAALKAFHDD 467
             M+ +L +  + +L+  L+ ++    +   +   T+  ++     S K + A+ AF + 
Sbjct: 170 NAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYNKAVDAFLEM 229

Query: 468 RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
               G  +    M   +SL+  L K      A  V  ++ F  I PD +TF+ L++ F  
Sbjct: 230 EKSYGVKTDTIAM---NSLMDALVKENSIEHAHEVFLKL-FDTIKPDARTFNILIHGFCK 285

Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAAT 575
                  + +  +++     PD   +   ++AYCK             +  +   P+  T
Sbjct: 286 ARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVT 345

Query: 576 KELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
             ++  SL K  +  EA  V E+ ++   VP
Sbjct: 346 YTIVMHSLGKSKQVAEALGVYEKMKEDGCVP 376



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 77/168 (45%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T + L     K+++  + + ++  +  ++F    V + + ++ Y   GD   V     E 
Sbjct: 275 TFNILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEM 334

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
           R+     +  +Y IVM    K+ +  EA+  + ++ ++G +P+++ Y+ +I  L   G+ 
Sbjct: 335 RENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRF 394

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
             A E+F  +    ++R    Y  ++   +   R + A  LL  M D+
Sbjct: 395 KDAAEIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDE 442



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 43/80 (53%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y+ ++ +L K K+  +A+ V E+M   G VPD + +S L++  +  G  K   ++F 
Sbjct: 343 VVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEIFE 402

Query: 540 MVRQNGVEPDAYMFKVLIQA 559
            +   GV  D  ++  +I A
Sbjct: 403 DMTNQGVRRDVLVYNTMISA 422



 Score = 40.8 bits (94), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 93/222 (41%), Gaps = 21/222 (9%)

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLN-VSVNFMN-LMQWYSTSG 151
           S   + H+  T +A+  VL K +    +  L+ +++ ++    V+++ M+ +M+  + SG
Sbjct: 158 SQTGYVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSG 217

Query: 152 DLELVLSTWNEYRQRAKLLS-TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
                +  + E  +   + + T + N +M    K      A E F ++ D    P++RT+
Sbjct: 218 KYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFD-TIKPDARTF 276

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
            ++I       K D A  +   + +         Y   VE +     F     +L EMR+
Sbjct: 277 NILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRE 336

Query: 271 DGKFP------------GRAMRVA-----LERMQEMGFIQGA 295
           +G  P            G++ +VA      E+M+E G +  A
Sbjct: 337 NGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDA 378


>gi|293336971|ref|NP_001167873.1| uncharacterized protein LOC100381578 [Zea mays]
 gi|223944573|gb|ACN26370.1| unknown [Zea mays]
 gi|414585240|tpg|DAA35811.1| TPA: hypothetical protein ZEAMMB73_503732 [Zea mays]
          Length = 640

 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 92/213 (43%), Gaps = 1/213 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           +V  AL        AL++ E + S      N +   AL   + K  R  E   L   + +
Sbjct: 318 LVIGALSKDGKPFEALAVFERM-SKRGCPANAAMYTALIDSMGKFGREKEAMALFERMKA 376

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           +     +V +  ++      G+LE  L+ +    ++   ++   Y  ++  + KTG   +
Sbjct: 377 TGIELDAVTYGVVVNCLCRFGNLEEALACFRSCVEKGVAVNAIFYTSLIDGFGKTGMVDQ 436

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A E F +++ +G +P+S  Y V+I+ LV  G+ D A   +  +      +T   Y IL++
Sbjct: 437 AKELFEEMVAKGFVPDSYCYNVLIDALVKAGRTDDACAFYKRMEDDGCDQTVYTYTILID 496

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
           G     + +EA    + M D G  P  A   AL
Sbjct: 497 GLFKEHKNEEALKFWDSMIDKGITPTAAAFRAL 529



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/238 (19%), Positives = 99/238 (41%), Gaps = 9/238 (3%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDI-SSSKFLNVSVNFM 141
           D+A+++ +A+ +      +  + + L     ++ R  +    + D+   ++     V ++
Sbjct: 221 DTAINVFDAMSTEHRVRPDVVSYNILIKGYCRAGRTQDAMARLADMREHAELAPDKVTYL 280

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRA--KLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
            LMQ + +       ++ + E  +R   K +   +Y +V+   +K GK FEA+  F ++ 
Sbjct: 281 TLMQRHYSEATFPQCIALFQEMEERGMGKEIPQHAYVLVIGALSKDGKPFEALAVFERMS 340

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
             G   N+  YT +I+ +   G+   A+ +F  +    I+  +  Y ++V         +
Sbjct: 341 KRGCPANAAMYTALIDSMGKFGREKEAMALFERMKATGIELDAVTYGVVVNCLCRFGNLE 400

Query: 260 EAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREM-----LPDKRIKNV 311
           EA +      + G         +L +   + G +  A E   EM     +PD    NV
Sbjct: 401 EALACFRSCVEKGVAVNAIFYTSLIDGFGKTGMVDQAKELFEEMVAKGFVPDSYCYNV 458



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 67/144 (46%), Gaps = 3/144 (2%)

Query: 135 NVSVN---FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
            V+VN   + +L+  +  +G ++     + E   +  +  +  YN+++    K G+  +A
Sbjct: 413 GVAVNAIFYTSLIDGFGKTGMVDQAKELFEEMVAKGFVPDSYCYNVLIDALVKAGRTDDA 472

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
              ++++ D+G      TYT++I+ L    K + AL+ + ++    I  T+  +  L  G
Sbjct: 473 CAFYKRMEDDGCDQTVYTYTILIDGLFKEHKNEEALKFWDSMIDKGITPTAAAFRALSNG 532

Query: 252 FVGVERFDEAKSLLNEMRDDGKFP 275
                +F  A  +L+E+   G  P
Sbjct: 533 LCLSGKFSRAWRILDELAPMGVIP 556



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 87/213 (40%), Gaps = 30/213 (14%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFS----HNQSTLHALATVLAKSQRNHELK 122
           L P  V  ALRS   A   L  +   +S PN +    H Q  L    ++L    R+ E  
Sbjct: 85  LSPAFVAAALRSPQLAPHPLPSLHFFRSLPNATDLRAHPQHLLSCYVSLLHSFARSRET- 143

Query: 123 TLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVY 182
                       + +     L+      GD  L           + L    S +++ S+ 
Sbjct: 144 ------------DAAGQARQLVAELRAHGDAVL-----------SHLTPASSASLIRSL- 179

Query: 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL-MRIKRT 241
           A  G + E +  ++ +   G  P+  TY  +++ LVN   LD+A+ VF A+    R++  
Sbjct: 180 AAFGLSEELLWAWQAMRLAGVEPSRLTYNCLLDGLVNADLLDTAINVFDAMSTEHRVRPD 239

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
              Y IL++G+    R  +A + L +MR+  + 
Sbjct: 240 VVSYNILIKGYCRAGRTQDAMARLADMREHAEL 272



 Score = 42.4 bits (98), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 39/81 (48%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y  ++  L+K  + F+A+ V E M   G   +   ++ L+      G EK    LF  ++
Sbjct: 316 YVLVIGALSKDGKPFEALAVFERMSKRGCPANAAMYTALIDSMGKFGREKEAMALFERMK 375

Query: 543 QNGVEPDAYMFKVLIQAYCKY 563
             G+E DA  + V++   C++
Sbjct: 376 ATGIELDAVTYGVVVNCLCRF 396


>gi|147859909|emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]
          Length = 724

 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 94/439 (21%), Positives = 172/439 (39%), Gaps = 55/439 (12%)

Query: 121 LKTLIGDISSSKFLNVSVNFMN-LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM 179
           L+ +  +I S K + +    +N ++  ++ SGD+   +S     +       T +   V+
Sbjct: 311 LQKIYAEIESDK-IELDGQLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVI 369

Query: 180 SVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIK 239
           +     G+  EA   F ++ + G +P +R Y  +++  V  G L  A  + S +      
Sbjct: 370 TALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFS 429

Query: 240 RTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM--RVALERMQEMGFIQGANE 297
                Y +L++ +    R++ A+ +L EM   G  P   +  R+ L   ++ G  Q + +
Sbjct: 430 PDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRI-LASYRDRGKWQKSFQ 488

Query: 298 FLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGV---RIAYGVQLKPWLDPKALANTLD 354
            LREM                          NSGV   R  Y V +  +     L + L 
Sbjct: 489 VLREM-------------------------RNSGVSPDRHFYNVMIDTFGKCNCLDHALA 523

Query: 355 EWSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
            +    +  +      W T +   CK   H K+ E           + G +        M
Sbjct: 524 TFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEE-----LFEAMQESGCSPCTTTYNIM 578

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
           +         E V  L+ K++S G+     T   +    G+S++A  A +    D     
Sbjct: 579 INSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTL----GLSEQAINAFRVMRADGLKPS 634

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
                  +L+ +SL+    + +RD +A +VL+ M  + + PDV T++ LM   AL   EK
Sbjct: 635 -------VLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMK--ALIRVEK 685

Query: 533 I--VQKLFSMVRQNGVEPD 549
              V  ++  +  +G  PD
Sbjct: 686 FDKVPAVYEEMTLSGCTPD 704



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 91/207 (43%), Gaps = 7/207 (3%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           LL  ++ T +L+   +A+S +S ME       FS ++ T   L    A + R    + ++
Sbjct: 403 LLKGYVKTGSLK---DAESIVSEME----RSGFSPDEHTYSLLIDAYANAGRWESARIVL 455

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
            ++ +S     S  F  ++  Y   G  +       E R          YN+++  + K 
Sbjct: 456 KEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKC 515

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
                A+ TF ++  EG  P++ T+  +I+     G  + A E+F A+        +  Y
Sbjct: 516 NCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTY 575

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDG 272
            I++  F   ER+++ K+LL +M+  G
Sbjct: 576 NIMINSFGEQERWEDVKTLLGKMQSQG 602



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 94/214 (43%), Gaps = 3/214 (1%)

Query: 62  LNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHEL 121
           L+ +LL+  IV  A   + + + A+S +  ++ N   S   +TL A+ T L  + R  E 
Sbjct: 325 LDGQLLNDIIVGFA--KSGDVNRAMSFLAMVQGN-GLSPKTATLVAVITALGNAGRTEEA 381

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
           + +  ++     +  +  +  L++ Y  +G L+   S  +E  +        +Y++++  
Sbjct: 382 EAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDA 441

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
           YA  G+   A    +++   G  PNS  ++ ++    + GK   + +V   +    +   
Sbjct: 442 YANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPD 501

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              Y ++++ F      D A +  + MR +G  P
Sbjct: 502 RHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQP 535



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 76/156 (48%), Gaps = 4/156 (2%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           D   L  ++   A+ G V      +A ++ +G+    +T+  +I   G + + + A +A 
Sbjct: 326 DGQLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEA-EAI 384

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
            ++    G + + +    Y++LL+   K     DA +++ EM  SG  PD  T+S L+  
Sbjct: 385 FEELKEGGLMPRTRA---YNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDA 441

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
           +A  G  +  + +   +  +GV P++Y+F  ++ +Y
Sbjct: 442 YANAGRWESARIVLKEMEASGVRPNSYVFSRILASY 477


>gi|15228903|ref|NP_188314.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274022|sp|Q9LSQ2.1|PP239_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial; AltName: Full=Protein
           PENTATRICOPEPTIDE REPEAT 40; Flags: Precursor
 gi|7670019|dbj|BAA94973.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332642359|gb|AEE75880.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 93/222 (41%), Gaps = 24/222 (10%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY---GISKKA 457
           G    VY+   ++  L +   +E     + +++  G+     T    +  Y   G  KK 
Sbjct: 420 GLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRGDVKKV 479

Query: 458 DAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
              L+           +  FK  ++ +S ++  L + K   DA +  +EM+  GI P+  
Sbjct: 480 HGVLEKLL--------VHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEI 531

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------L 564
           T++ L+      GD     KLF+ +++NG+ PD Y +   IQ++CK             +
Sbjct: 532 TYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTM 591

Query: 565 SNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
               L PD  T   L K+L + GR  EA  +    E+   VP
Sbjct: 592 LRIGLKPDNFTYSTLIKALSESGRESEAREMFSSIERHGCVP 633



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 100/476 (21%), Positives = 188/476 (39%), Gaps = 42/476 (8%)

Query: 150 SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRT 209
           S  L+L    + + R         +YNI++    K G   EA+   +Q+  EG  PN  T
Sbjct: 193 SNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFT 252

Query: 210 YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER-FDEAKS---LL 265
           YT++I+  +  G++D AL+    L +MR+++ +     +     G+ R     K+   L+
Sbjct: 253 YTILIDGFLIAGRVDEALK---QLEMMRVRKLNPNEATIRTFVHGIFRCLPPCKAFEVLV 309

Query: 266 NEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREM-----LPDKRIKNVRYYEDGSDD 320
             M  D           L  +      +   +FLR++     +PD    N          
Sbjct: 310 GFMEKDSNLQRVGYDAVLYCLSNNSMAKETGQFLRKIGERGYIPDSSTFNAAMSCLLKGH 369

Query: 321 DEDENDDNNSGVRIAYGVQLKPWLDP-----KALANT--LDEWSPEVVSLLADAKF--VW 371
           D  E      G  ++ GV  KP  +      +AL N     E    +  +  D     V+
Sbjct: 370 DLVETCRIFDGF-VSRGV--KPGFNGYLVLVQALLNAQRFSEGDRYLKQMGVDGLLSSVY 426

Query: 372 TTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAK 431
           +   V   L   +  E A  F   +  + G + ++      L+  +  G V+ V  ++ K
Sbjct: 427 SYNAVIDCLCKARRIENAAMFLTEMQDR-GISPNLVTFNTFLSGYSVRGDVKKVHGVLEK 485

Query: 432 LRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLT 491
           L   G +    T  LII+    +K+   A   F +   L   I   ++   Y+ L+R+  
Sbjct: 486 LLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKE--MLEWGIEPNEIT--YNILIRSCC 541

Query: 492 KCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAY 551
                  ++ +  +M  +G+ PD+  ++  +  F      K  ++L   + + G++PD +
Sbjct: 542 STGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNF 601

Query: 552 MFKVLIQAYCK------------YLSNSNLMPDAATKELLKK-SLWKEGRRKEAAA 594
            +  LI+A  +             +     +PD+ TK L+++  L K G  +E  +
Sbjct: 602 TYSTLIKALSESGRESEAREMFSSIERHGCVPDSYTKRLVEELDLRKSGLSRETVS 657



 Score = 45.8 bits (107), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 11/192 (5%)

Query: 373 TRLVCKVLRHFKSPETAWHFFCWVA-YQPGYTHDVYALEKMLTILARHGHVELVDRLIAK 431
           TR V  VL++  +P  +  F+ WV+ + P Y  D      +   L R G + L   L+ +
Sbjct: 76  TRFVISVLQNQDNPLHSLRFYLWVSNFDPVYAKDQSLKSVLGNALFRKGPLLLSMELLKE 135

Query: 432 LRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFKLMLLYSSLLRTL 490
           +R  G R+    + ++I  +G    A      F     L   P ++     LY++++  L
Sbjct: 136 IRDSGYRISDELMCVLIGSWGRLGLAKYCNDVFAQISFLGMKPSTR-----LYNAVIDAL 190

Query: 491 TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG--DEKIVQKLFSMVRQNGVEP 548
            K      A    ++M   G  PD  T++ L++    +G  DE I  +L   + Q G  P
Sbjct: 191 VKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAI--RLVKQMEQEGNRP 248

Query: 549 DAYMFKVLIQAY 560
           + + + +LI  +
Sbjct: 249 NVFTYTILIDGF 260



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 41/226 (18%), Positives = 93/226 (41%), Gaps = 18/226 (7%)

Query: 65  RLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTL---------------HALA 109
           R+ D F V+  ++  P  +  L +++AL +   FS     L               +A+ 
Sbjct: 376 RIFDGF-VSRGVK--PGFNGYLVLVQALLNAQRFSEGDRYLKQMGVDGLLSSVYSYNAVI 432

Query: 110 TVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKL 169
             L K++R       + ++         V F   +  YS  GD++ V     +       
Sbjct: 433 DCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFK 492

Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
               +++++++   +  +  +A + F+++++ G  PN  TY ++I    + G  D ++++
Sbjct: 493 PDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKL 552

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           F+ +    +      Y   ++ F  + +  +A+ LL  M   G  P
Sbjct: 553 FAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKP 598



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 51/125 (40%)

Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
           G L L +    E R     +S E   +++  + + G      + F Q+   G  P++R Y
Sbjct: 124 GPLLLSMELLKEIRDSGYRISDELMCVLIGSWGRLGLAKYCNDVFAQISFLGMKPSTRLY 183

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
             +I+ LV    LD A   F  +     K     Y IL+ G       DEA  L+ +M  
Sbjct: 184 NAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQ 243

Query: 271 DGKFP 275
           +G  P
Sbjct: 244 EGNRP 248


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 114/537 (21%), Positives = 202/537 (37%), Gaps = 71/537 (13%)

Query: 65  RLLDPFIVT-------HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR 117
           R ++P +VT       H LR+    D A+ + + +  + +   N  + + L     K Q 
Sbjct: 249 RGVEPNVVTYNALMDGHCLRN--EVDVAVKVFDTM-VHKDCVANVISYNTLINGYCKIQS 305

Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI 177
             +   L  ++S  +    +V +  L+      G L+  +S ++E   R ++    +Y  
Sbjct: 306 VDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRT 365

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           +     K     +A+   + +      P+ + YT +++ +   G+L+ A ++FS L    
Sbjct: 366 LSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKG 425

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGAN- 296
           ++     Y I++ G        EA  L +EM  +G  P       + R    GF++    
Sbjct: 426 LQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITR----GFLRNNEA 481

Query: 297 ----EFLREMLPDKRIKNVR--------YYEDGSDDDEDENDDNNSGVRIAYGVQLK--P 342
               E L EML      +V           +DG D    +     S      G Q++  P
Sbjct: 482 LRTIELLEEMLARGFSVDVSTTTLLVGMLSDDGLDQSVKQILCKPSSSSRPSGTQMRSLP 541

Query: 343 WLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGY 402
            L   +  N+L   SP   +L  D       R++     H   P +   F          
Sbjct: 542 PLFLSSSHNSLHSRSPHFNTL--DDALSSFNRML-----HMHPPPSTVDF---------- 584

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID--------FYGIS 454
                   K+LT +A+  H   V  L  ++ S G+     T+ ++I+         Y  S
Sbjct: 585 -------TKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFS 637

Query: 455 KKADAALKAFHDD--------RTLCGPISKF--KLMLLYSSLLRTLTKCKRDFDAINVLE 504
             A      F  D          LC  I+K     +  Y+SL+  L           +L 
Sbjct: 638 VLAKLLKLGFQPDVVTYGTLMNGLCKMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLN 697

Query: 505 EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           EM+ S I+P+V  FS ++     +G   I   +  M+ + GVEPD   +  L+  +C
Sbjct: 698 EMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHC 754



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 82/178 (46%), Gaps = 5/178 (2%)

Query: 98  FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVL 157
           F++N S +HAL  +    +  H + TL+ ++ +SK +   V F  ++      G + +  
Sbjct: 674 FTYN-SLIHALCNL---CEWKH-VTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAH 728

Query: 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217
              +   +R       +Y  +M  +    +  EAV+ F  ++ +G +PN R+Y ++I   
Sbjct: 729 DVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGY 788

Query: 218 VNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             + ++D A+ +   + L  +   +  Y  L+ G   V R   A +L +EM   G+ P
Sbjct: 789 CQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIP 846



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/379 (20%), Positives = 150/379 (39%), Gaps = 36/379 (9%)

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
           GK  EA+  F ++I EG  PN  TY  +I  L    ++  A  +FS +    I      Y
Sbjct: 129 GKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTY 188

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLP 304
             L+ G   +  +    +L+NEM D    P    +   ++ + + G +  A++ +  M+ 
Sbjct: 189 NSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIH 248

Query: 305 DKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLL 364
                NV  Y    D     N+     V +A  V     +    +AN +           
Sbjct: 249 RGVEPNVVTYNALMDGHCLRNE-----VDVAVKV-FDTMVHKDCVANVI----------- 291

Query: 365 ADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVEL 424
               +       CK+    +S + A + F  ++ Q   T +      ++  L   G ++ 
Sbjct: 292 ---SYNTLINGYCKI----QSVDKAMYLFEEMSRQE-LTPNTVTYNTLIHGLCHVGRLQD 343

Query: 425 VDRLIAKLRSDGMRLPFSTIRLIIDFYGISK---KADAALKAFHDDRTLCGPISKFKLML 481
              L  ++ + G      T R + D+   ++   KA A LKA         P  +     
Sbjct: 344 AISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNW--DPDIQ----- 396

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
           +Y+++L  + +     DA ++   +   G+ P+V T++ +++    QG      KLFS +
Sbjct: 397 IYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEM 456

Query: 542 RQNGVEPDAYMFKVLIQAY 560
            +NG  P+   + ++ + +
Sbjct: 457 NKNGCSPNDCTYNLITRGF 475



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 4/162 (2%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   DVY L  ++  L     V+     +AK+   G +   +T   +I    +  K   A
Sbjct: 75  GIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEA 134

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           L  F  D+ +         ++ Y +L+  L K ++  +A N+  EMI  GI P++ T++ 
Sbjct: 135 LHLF--DKMIGEGFQPN--VVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNS 190

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           L++      + K V  L + +  + + PD +    ++ A CK
Sbjct: 191 LIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCK 232



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 16/144 (11%)

Query: 480 MLLYSSLLRTLTKCKRDFDAI--NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL 537
           ++++S+++  L  CK    AI  +V++ MI  G+ PDV T++ LM    L+ +     K+
Sbjct: 708 VVVFSTVVDAL--CKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKV 765

Query: 538 FSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWK 585
           F  +   G  P+   + +LI  YC+             +S   L+ D  T   L   L  
Sbjct: 766 FDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCH 825

Query: 586 EGRRKEAAAVEERCEKINDVPSLA 609
            GR + A A+         +P L 
Sbjct: 826 VGRLQHAIALFHEMVASGQIPDLV 849



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 16/127 (12%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ--KLFSM 540
           +++L+R L    +  +A+++ ++MI  G  P+V T+  L+    L  D ++ +   +FS 
Sbjct: 118 FTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLIN--GLCKDRQVTEAFNIFSE 175

Query: 541 VRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGR 588
           +   G+ P+   +  LI   CK             + +S +MPD  T   +  +L KEG 
Sbjct: 176 MITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGM 235

Query: 589 RKEAAAV 595
             EA  V
Sbjct: 236 VAEAHDV 242



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 30/161 (18%), Positives = 68/161 (42%), Gaps = 1/161 (0%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  Y     ++  +    +   +  +  T +YN ++      G+   A+  F +++  G
Sbjct: 784 LINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASG 843

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            IP+  TY +++++L     L  A+ +  A+    +      Y I ++G       + A+
Sbjct: 844 QIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAAR 903

Query: 263 SLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREM 302
            L + +   G  P  R   + +  + + G +  AN+  R+M
Sbjct: 904 DLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKM 944



 Score = 46.2 bits (108), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 84/223 (37%), Gaps = 1/223 (0%)

Query: 98  FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVL 157
           F  N  T   L   L K ++  E   +  ++ +       V + +L+       + + V 
Sbjct: 146 FQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVT 205

Query: 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217
           +  NE      +    + N V+    K G   EA +    +I  G  PN  TY  +++  
Sbjct: 206 TLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGH 265

Query: 218 VNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR 277
               ++D A++VF  +           Y  L+ G+  ++  D+A  L  EM      P  
Sbjct: 266 CLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNT 325

Query: 278 AM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSD 319
                 +  +  +G +Q A     EM+   +I ++  Y   SD
Sbjct: 326 VTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSD 368



 Score = 46.2 bits (108), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 88/232 (37%), Gaps = 43/232 (18%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           DV+ L  ++  L + G V     ++  +   G+     T   ++D + +  + D A+K F
Sbjct: 219 DVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVF 278

Query: 465 ----HDD--------RTL----CGPISKFKLMLL---------------YSSLLRTLTKC 493
               H D         TL    C   S  K M L               Y++L+  L   
Sbjct: 279 DTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHV 338

Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
            R  DAI++  EM+  G +PD+ T+  L  +            L   +  +  +PD  ++
Sbjct: 339 GRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIY 398

Query: 554 KVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
             ++   C+             LS+  L P+  T  ++   L K+G   EA+
Sbjct: 399 TTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEAS 450



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 53/131 (40%), Gaps = 14/131 (10%)

Query: 493 CKRDF--DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA 550
           CK     +A +V++ MI  G+ P+V T++ LM    L+ +  +  K+F  +       + 
Sbjct: 231 CKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANV 290

Query: 551 YMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
             +  LI  YCK             +S   L P+  T   L   L   GR ++A ++   
Sbjct: 291 ISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHE 350

Query: 599 CEKINDVPSLA 609
                 +P L 
Sbjct: 351 MVARGQIPDLV 361



 Score = 43.5 bits (101), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 32/158 (20%), Positives = 70/158 (44%), Gaps = 4/158 (2%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           +V     ++  L + G + +   ++  +   G+     T   ++D + +  + D A+K F
Sbjct: 707 NVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVF 766

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
            D     G +   +    Y+ L+    + +R   A+ +LE+M   G++ D  T++ L++ 
Sbjct: 767 -DTMVHKGCVPNVRS---YNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHG 822

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
               G  +    LF  +  +G  PD   +++L+   CK
Sbjct: 823 LCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCK 860



 Score = 43.1 bits (100), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 42/214 (19%), Positives = 90/214 (42%), Gaps = 10/214 (4%)

Query: 65  RLLDPFIVT-------HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR 117
           R ++P +VT       H LRS    D A+ + + +  +     N  + + L     + QR
Sbjct: 737 RGVEPDVVTYTALMDGHCLRS--EMDEAVKVFDTM-VHKGCVPNVRSYNILINGYCQIQR 793

Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI 177
             +   L+  +S    +  +V +  L+      G L+  ++ ++E     ++    +Y I
Sbjct: 794 MDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRI 853

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           ++    K     EA+   + +       +   Y + I+ +   G+L++A ++FS L    
Sbjct: 854 LLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKG 913

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
           ++   + Y I++ G       DEA  L  +M ++
Sbjct: 914 LQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDEN 947



 Score = 42.7 bits (99), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 66/160 (41%), Gaps = 22/160 (13%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++L+  L    R   AI +  EM+ SG +PD+ T+  L+ +            L   + 
Sbjct: 816 YNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIE 875

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
            + ++ D  ++ + I   C+             LS+  L PD  T  ++   L K G   
Sbjct: 876 GSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLD 935

Query: 591 EAAAVEERCEKINDVPSLALRGHIWAVSSADLTRVHSIYR 630
           EA  +  + ++ ND         IW+ S++   +   IY+
Sbjct: 936 EANKLFRKMDE-ND---------IWSNSTSSRNQKSLIYQ 965



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 56/123 (45%)

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
           L+  LST+N    +    ST  +N +++  AKT  +   +   RQ+   G  P+  T  +
Sbjct: 26  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAI 85

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +I  L +L ++D A    + +  +  +  +  +  L+ G     +  EA  L ++M  +G
Sbjct: 86  VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEG 145

Query: 273 KFP 275
             P
Sbjct: 146 FQP 148


>gi|224144893|ref|XP_002325452.1| predicted protein [Populus trichocarpa]
 gi|222862327|gb|EEE99833.1| predicted protein [Populus trichocarpa]
          Length = 864

 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 70/146 (47%), Gaps = 13/146 (8%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YN ++S + K G   EA++ + +++ +G +P + TY V+IE    +GK+D A E+ + + 
Sbjct: 718 YNTLISGHGKIGNKKEAIKFYCEMVTKGLVPKTSTYNVLIEDFAKVGKMDQARELLNEMQ 777

Query: 235 LMRIKRTSKQYLILVEGFVGVER---FD---------EAKSLLNEMRDDGKFPGRAMRVA 282
           + R+   S  Y IL+ G+  + +    D         EA++L  EM + G  P       
Sbjct: 778 VRRVPPNSSTYDILICGWCNLSKQPELDRISKKTYRTEARTLFAEMNEKGFVPCENTLAC 837

Query: 283 LER-MQEMGFIQGANEFLREMLPDKR 307
           +       G +  A   L++M   K+
Sbjct: 838 ISSTFARPGMVVDAKHMLKDMYKRKQ 863



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 98/533 (18%), Positives = 210/533 (39%), Gaps = 86/533 (16%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L K+ ++ E + +   ++    +  ++ +  ++  Y   GD++   S   +  ++  + +
Sbjct: 271 LFKAGKSDEAEAMFCTLAKLNCIPNNITYTAMIDGYCKLGDMDGAESLLRDMEKKQVVPN 330

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
             +Y+ +++ Y K G    AV   ++++D+  +PN+  Y  +I+  +  GK D+A+++++
Sbjct: 331 VVTYSSIINGYTKKGMLDVAVRIMKKMLDQNIMPNAYIYATLIDGHLKAGKQDAAVDLYN 390

Query: 232 ALPLMRIKRTSKQYLILVEGFVG----VERFDEAKSLLNEMRDDGKFPGRAMRVALERMQ 287
            + L  ++  S     +V+ F+       + +EA+ L   M   G    R    +L    
Sbjct: 391 EMKLNGLEENS----FIVDAFINNLKRGRKMEEAEGLCKYMMSKGLLLDRVNYTSLMD-- 444

Query: 288 EMGFIQGANE----FLREMLPDKRIK-NVRYYED--------GSDDDEDENDDNNSGV-- 332
             GF +   E     + E + +  IK +V  Y          G  D E       SG+  
Sbjct: 445 --GFFKTGRESAAFTMAEKMAETGIKFDVVAYNVLINGLLRLGKYDAESV----YSGIRE 498

Query: 333 ------RIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHF--K 384
                 R  Y   +  +     L N +  W+            V    + C +L     K
Sbjct: 499 LGLAPDRATYNTMINAYCKQGKLENAIKLWNE------MKGHSVMPNSITCNILVGGLSK 552

Query: 385 SPETA-----------WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIA-KL 432
           + ET            W     V       +     E+  TIL  H       RL+   L
Sbjct: 553 AGETERAIDVLNEMLLWGICPNVTIHRALLNACSKCERADTILQMH------KRLVGMGL 606

Query: 433 RSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK 492
           +++  R  ++++  ++   G++K+A   L     +      ++       Y++L+    K
Sbjct: 607 KAN--REVYNSLITVLCGLGMTKRATLVLNNMTKEGISADTVT-------YNALIHGHFK 657

Query: 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYM 552
                 A+    +M+  G+ P ++T++ L+      G      ++ S ++ +G++PDA +
Sbjct: 658 SSHIEKALATYTQMLNEGVSPGIRTYNLLLGGLLAAGLMSKAYEILSKMKDSGLDPDASL 717

Query: 553 FKVLIQA-------------YCKYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           +  LI               YC+ ++   L+P  +T  +L +   K G+  +A
Sbjct: 718 YNTLISGHGKIGNKKEAIKFYCEMVTKG-LVPKTSTYNVLIEDFAKVGKMDQA 769



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 2/205 (0%)

Query: 79  APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV 138
           A   D+A+ +   +K N     N   + A    L + ++  E + L   + S   L   V
Sbjct: 379 AGKQDAAVDLYNEMKLN-GLEENSFIVDAFINNLKRGRKMEEAEGLCKYMMSKGLLLDRV 437

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
           N+ +LM  +  +G      +   +  +        +YN++++   + GK ++A   +  +
Sbjct: 438 NYTSLMDGFFKTGRESAAFTMAEKMAETGIKFDVVAYNVLINGLLRLGK-YDAESVYSGI 496

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
            + G  P+  TY  MI      GKL++A+++++ +    +   S    ILV G       
Sbjct: 497 RELGLAPDRATYNTMINAYCKQGKLENAIKLWNEMKGHSVMPNSITCNILVGGLSKAGET 556

Query: 259 DEAKSLLNEMRDDGKFPGRAMRVAL 283
           + A  +LNEM   G  P   +  AL
Sbjct: 557 ERAIDVLNEMLLWGICPNVTIHRAL 581



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/274 (20%), Positives = 111/274 (40%), Gaps = 31/274 (11%)

Query: 26  RAPFTNKLALYLRRAQLIDSIRL-------AVRSNS--SNSLSS-------------LLN 63
           RA +   +  Y ++ +L ++I+L       +V  NS   N L               +LN
Sbjct: 505 RATYNTMINAYCKQGKLENAIKLWNEMKGHSVMPNSITCNILVGGLSKAGETERAIDVLN 564

Query: 64  DRLL---DPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKS 115
           + LL    P +  H     A      AD+ L + + L        N+   ++L TVL   
Sbjct: 565 EMLLWGICPNVTIHRALLNACSKCERADTILQMHKRL-VGMGLKANREVYNSLITVLCGL 623

Query: 116 QRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
                   ++ +++       +V +  L+  +  S  +E  L+T+ +           +Y
Sbjct: 624 GMTKRATLVLNNMTKEGISADTVTYNALIHGHFKSSHIEKALATYTQMLNEGVSPGIRTY 683

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           N+++      G   +A E   ++ D G  P++  Y  +I     +G    A++ +  +  
Sbjct: 684 NLLLGGLLAAGLMSKAYEILSKMKDSGLDPDASLYNTLISGHGKIGNKKEAIKFYCEMVT 743

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
             +   +  Y +L+E F  V + D+A+ LLNEM+
Sbjct: 744 KGLVPKTSTYNVLIEDFAKVGKMDQARELLNEMQ 777



 Score = 45.4 bits (106), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 13/125 (10%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+SL+    K  R+  A  + E+M  +GI  DV  ++ L+      G     + ++S +R
Sbjct: 439 YTSLMDGFFKTGRESAAFTMAEKMAETGIKFDVVAYNVLINGLLRLGKYD-AESVYSGIR 497

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
           + G+ PD   +  +I AYCK             +   ++MP++ T  +L   L K G  +
Sbjct: 498 ELGLAPDRATYNTMINAYCKQGKLENAIKLWNEMKGHSVMPNSITCNILVGGLSKAGETE 557

Query: 591 EAAAV 595
            A  V
Sbjct: 558 RAIDV 562



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 68/140 (48%), Gaps = 12/140 (8%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y++L+    K     +A+++ EEMI  G +PDV T+S ++     +G     + L  
Sbjct: 156 LVTYTTLISAYCKQHGLSEALSLYEEMISDGFLPDVVTYSSIINGLCKRGMLTEAKALLR 215

Query: 540 MVRQNGVEPDAYMFKVLI-------QAYCKYLSNSNLMPDAATKEL-----LKKSLWKEG 587
            + + GV P+  ++ +L+        A+  ++  S ++    + +L     L   L+K G
Sbjct: 216 EMDKMGVNPNHVVYAILVDSLFKAGSAWESFIYQSQMIVCGVSFDLVVCTTLIDGLFKAG 275

Query: 588 RRKEAAAVEERCEKINDVPS 607
           +  EA A+     K+N +P+
Sbjct: 276 KSDEAEAMFCTLAKLNCIPN 295



 Score = 43.9 bits (102), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 1/132 (0%)

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
           T +YN ++  + K+    +A+ T+ Q+++EG  P  RTY +++  L+  G +  A E+ S
Sbjct: 645 TVTYNALIHGHFKSSHIEKALATYTQMLNEGVSPGIRTYNLLLGGLLAAGLMSKAYEILS 704

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMG 290
            +    +   +  Y  L+ G   +    EA     EM   G  P  +   V +E   ++G
Sbjct: 705 KMKDSGLDPDASLYNTLISGHGKIGNKKEAIKFYCEMVTKGLVPKTSTYNVLIEDFAKVG 764

Query: 291 FIQGANEFLREM 302
            +  A E L EM
Sbjct: 765 KMDQARELLNEM 776



 Score = 43.5 bits (101), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 82/415 (19%), Positives = 158/415 (38%), Gaps = 45/415 (10%)

Query: 158 STWNEY-RQRAKLLSTESYNIVMSVYA-----KTGKNFEAVETFRQVIDEGAIPNSRTYT 211
           S W  +  Q   ++   S+++V+         K GK+ EA   F  +     IPN+ TYT
Sbjct: 241 SAWESFIYQSQMIVCGVSFDLVVCTTLIDGLFKAGKSDEAEAMFCTLAKLNCIPNNITYT 300

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
            MI+    LG +D A  +   +   ++      Y  ++ G+      D A  ++ +M D 
Sbjct: 301 AMIDGYCKLGDMDGAESLLRDMEKKQVVPNVVTYSSIINGYTKKGMLDVAVRIMKKMLDQ 360

Query: 272 GKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDN--- 328
              P                    N ++   L D  +K  +  +D + D  +E   N   
Sbjct: 361 NIMP--------------------NAYIYATLIDGHLKAGK--QDAAVDLYNEMKLNGLE 398

Query: 329 -NSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSP- 386
            NS +  A+   LK           ++E       +++    +        +   FK+  
Sbjct: 399 ENSFIVDAFINNLKR-------GRKMEEAEGLCKYMMSKGLLLDRVNYTSLMDGFFKTGR 451

Query: 387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
           E+A         + G   DV A   ++  L R G  +  + + + +R  G+    +T   
Sbjct: 452 ESAAFTMAEKMAETGIKFDVVAYNVLINGLLRLGKYD-AESVYSGIRELGLAPDRATYNT 510

Query: 447 IIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
           +I+ Y    K + A+K +++ +      S     +  + L+  L+K      AI+VL EM
Sbjct: 511 MINAYCKQGKLENAIKLWNEMKGH----SVMPNSITCNILVGGLSKAGETERAIDVLNEM 566

Query: 507 IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           +  GI P+V     L+   +       + ++   +   G++ +  ++  LI   C
Sbjct: 567 LLWGICPNVTIHRALLNACSKCERADTILQMHKRLVGMGLKANREVYNSLITVLC 621



 Score = 42.4 bits (98), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 88/474 (18%), Positives = 185/474 (39%), Gaps = 76/474 (16%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           +N ++  +  TG   +  + + +++  G +PN  T+ +++     +G L  AL++   + 
Sbjct: 14  WNRLIYQFNATGLVSQVWDLYSEMLSCGVLPNVFTHNILVHAWCKMGHLSLALDLIRNVD 73

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM-RDDGKFPGRAMRVALERMQEMGFIQ 293
              I   +  Y   + GF      ++    L+ M + D  F      + ++    +G ++
Sbjct: 74  ---IDVDTVTYNTAIWGFCQQGLANQGFGFLSIMVKKDTFFDSFTCNILVKGFCRIGSVK 130

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTL 353
              E++ + L D          D +DDD   N + N    + Y   +  +     L+  L
Sbjct: 131 -YGEWVMDNLID----------DMNDDDGTTNLEPN---LVTYTTLISAYCKQHGLSEAL 176

Query: 354 --------DEWSPEVVS------------LLADAKF---------VWTTRLVCKVLRH-- 382
                   D + P+VV+            +L +AK          V    +V  +L    
Sbjct: 177 SLYEEMISDGFLPDVVTYSSIINGLCKRGMLTEAKALLREMDKMGVNPNHVVYAILVDSL 236

Query: 383 FKSPETAWHFFCWVAYQ--PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP 440
           FK+  +AW  F + +     G + D+     ++  L + G  +  + +   L        
Sbjct: 237 FKAG-SAWESFIYQSQMIVCGVSFDLVVCTTLIDGLFKAGKSDEAEAMFCTLAKLNCIPN 295

Query: 441 FSTIRLIIDFY---GISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDF 497
             T   +ID Y   G    A++ L+     + +   ++       YSS++   TK K   
Sbjct: 296 NITYTAMIDGYCKLGDMDGAESLLRDMEKKQVVPNVVT-------YSSIINGYTK-KGML 347

Query: 498 D-AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
           D A+ ++++M+   I+P+   ++ L+      G +     L++ ++ NG+E ++++    
Sbjct: 348 DVAVRIMKKMLDQNIMPNAYIYATLIDGHLKAGKQDAAVDLYNEMKLNGLEENSFIVDAF 407

Query: 557 I------------QAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
           I            +  CKY+ +  L+ D      L    +K GR   A  + E+
Sbjct: 408 INNLKRGRKMEEAEGLCKYMMSKGLLLDRVNYTSLMDGFFKTGRESAAFTMAEK 461



 Score = 40.0 bits (92), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%)

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
           LY++L+    K     +AI    EM+  G+VP   T++ L+  FA  G     ++L + +
Sbjct: 717 LYNTLISGHGKIGNKKEAIKFYCEMVTKGLVPKTSTYNVLIEDFAKVGKMDQARELLNEM 776

Query: 542 RQNGVEPDAYMFKVLIQAYC 561
           +   V P++  + +LI  +C
Sbjct: 777 QVRRVPPNSSTYDILICGWC 796


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 94/446 (21%), Positives = 177/446 (39%), Gaps = 42/446 (9%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++N  +    K  +  EA +   +++  G  PNS TY V++  L  +GK+D A  + + +
Sbjct: 289 TFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKV 348

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNE-MRDDGKFPG-RAMRVALERMQEMGF 291
           P          +  L+ G+V   R DEAK++++E M   G  P        +  + + G+
Sbjct: 349 P----NPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGY 404

Query: 292 IQGANEFLREMLPDKRIKNV--------RYYEDGSDDDEDENDDNNSGVRIA-----YGV 338
           +  A E + EM       NV        R+ ++G  ++     D  SG  +A     Y  
Sbjct: 405 LVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNC 464

Query: 339 QLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWV 396
            +      + + + L+ +            F + + +  +CKV +     E A   +  +
Sbjct: 465 LISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKF----EEALGLYQDM 520

Query: 397 AYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK 456
             + G   +      ++    R G ++   +L+  +   G  L   T   +I     +  
Sbjct: 521 LLE-GVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGN 579

Query: 457 ADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
            +  L  F D  +     +     +L + L RT         A+  L +MI  G+ PD+ 
Sbjct: 580 IEKGLALFEDMMSKGLNPNNISCNILINGLCRT----GNIQHALEFLRDMIHRGLTPDIV 635

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK---------YLS-- 565
           T++ L+      G  +    LF  ++  G+ PDA  +  LI  +CK          LS  
Sbjct: 636 TYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRG 695

Query: 566 -NSNLMPDAATKELLKKSLWKEGRRK 590
            +S  +P+  T  +L  +  KEG ++
Sbjct: 696 VDSGFIPNEVTWYILVSNFIKEGDQE 721



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 96/239 (40%), Gaps = 23/239 (9%)

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTH--DVYALEKMLTILARHGHVELVDRLIAKLR 433
           +CK+L       T+   F W   Q GY H  DVY +  ++  L   G  + +D L+ +++
Sbjct: 81  LCKLLELPLDVPTSMELFQWAGTQKGYCHMFDVYYM--LIDKLGAAGEFKTIDALLMQMK 138

Query: 434 SDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL--CGPISKFKLMLLYSSLLRTLT 491
            +G+    S   LI+  YG +     A +   D R +  C P  +      Y+ +L  L 
Sbjct: 139 QEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFRS-----YNVVLDVLL 193

Query: 492 KCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAY 551
                    NV  EM+  GI P V TF  +M    L  +      L   + ++G  P+A 
Sbjct: 194 AGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAI 253

Query: 552 MFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
           +++ LI A  K             +     +PD  T       L K  R  EAA + +R
Sbjct: 254 VYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDR 312



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 62/138 (44%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + +  L++    +G++E  L+ + +   +    +  S NI+++   +TG    A+E  R 
Sbjct: 565 ITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRD 624

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +I  G  P+  TY  +I  L   G+   AL +F  L +  I   +  Y  L+        
Sbjct: 625 MIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGM 684

Query: 258 FDEAKSLLNEMRDDGKFP 275
           FD+A  LL+   D G  P
Sbjct: 685 FDDAHLLLSRGVDSGFIP 702



 Score = 42.7 bits (99), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 86/443 (19%), Positives = 172/443 (38%), Gaps = 32/443 (7%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++ +VM       +   A    + +   G +PN+  Y  +I  L  +G+++  L++   +
Sbjct: 219 TFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEM 278

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
            LM        +   + G   + R  EA  L++ M   G  P      V +  +  MG +
Sbjct: 279 LLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKV 338

Query: 293 QGANEFLREML-PDKRIKN--VRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPW------ 343
             A   L ++  P+  + N  +  Y      DE +   + S + +  G  +  +      
Sbjct: 339 DEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILG 398

Query: 344 LDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYT 403
           L  K    +  E   E+     +   +  T L+ +  +  +  E A +    ++ + G  
Sbjct: 399 LCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRL-EEARNVLDEMSGK-GLA 456

Query: 404 HDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK--KADAAL 461
            +      +++ L +   V+    +   + S G +    T   +I  +G+ K  K + AL
Sbjct: 457 LNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLI--FGLCKVNKFEEAL 514

Query: 462 KAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL 521
              + D  L G I+     + Y++L+    +     +A+ ++ +M+F G   D  T++GL
Sbjct: 515 -GLYQDMLLEGVIAN---TITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGL 570

Query: 522 MYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNL 569
           +      G+ +    LF  +   G+ P+     +LI   C+             + +  L
Sbjct: 571 IKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGL 630

Query: 570 MPDAATKELLKKSLWKEGRRKEA 592
            PD  T   L   L K GR +EA
Sbjct: 631 TPDIVTYNSLINGLCKTGRAQEA 653



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 35/182 (19%), Positives = 69/182 (37%)

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
           S    + N    + L + L K ++  +   + GD+SS         F +L+         
Sbjct: 451 SGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKF 510

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           E  L  + +      + +T +YN ++  + + G   EA++    ++  G   +  TY  +
Sbjct: 511 EEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGL 570

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           I+ L   G ++  L +F  +    +   +    IL+ G         A   L +M   G 
Sbjct: 571 IKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGL 630

Query: 274 FP 275
            P
Sbjct: 631 TP 632



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 75/185 (40%), Gaps = 15/185 (8%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
            F+ N  T   L   L +  +  E + L+  + +    NV V F  L+  Y + G L+  
Sbjct: 317 GFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNP---NV-VLFNTLINGYVSRGRLDEA 372

Query: 157 LSTWNEYRQRAKLLSTE------SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
            +  +E      +LS        +YN ++    K G    A E   ++  +G  PN  TY
Sbjct: 373 KAVMHE-----SMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITY 427

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
           T++I+     G+L+ A  V   +    +   +  Y  L+      E+  +A ++  +M  
Sbjct: 428 TILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSS 487

Query: 271 DGKFP 275
            G  P
Sbjct: 488 KGCKP 492


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 111/263 (42%), Gaps = 26/263 (9%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           L+D F   + L     A+  + +M +   +PN      T + L     K+ R  +   L 
Sbjct: 374 LIDGFCKENHL---DKANQMVDLMVSKGCDPNIR----TFNILINGYCKANRIDDGLELF 426

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
             +S    +  +V +  L+Q +   G L +    + E   R    +  +Y I++      
Sbjct: 427 RKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDN 486

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
           G++ +A+E F ++       +   Y ++I  + N  K+D A ++F +LPL  +K   K Y
Sbjct: 487 GESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTY 546

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGKFP---------------GRAMRVA--LERMQE 288
            I++ G        EA+ L  +M +DG  P               G A +    +E ++ 
Sbjct: 547 NIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKR 606

Query: 289 MGFIQGAN--EFLREMLPDKRIK 309
            GF   A+  + + +ML D R+K
Sbjct: 607 CGFSVDASTIKMVIDMLSDGRLK 629



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 123/616 (19%), Positives = 246/616 (39%), Gaps = 75/616 (12%)

Query: 46  IRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPN-----ADSALSIMEALKSNPNFSH 100
           ++L +R  SS  +S  +  RLL+   +  AL + PN      +   S      S+ N S+
Sbjct: 2   VKLMIRRLSS-QVSKFVQPRLLETGTLRIALINCPNELSFCCERGFSAF----SDRNLSY 56

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
            +     L  + A    +     L  D+  S+ L   ++F  L    + +   +LVL+  
Sbjct: 57  RERLRSGLVDIKADDAID-----LFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALC 111

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            +   +    +  + +I+++ + +  K   A     ++I  G  PN+ T++ +I  L   
Sbjct: 112 KQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLE 171

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM- 279
           G++  ALE+   +  M  K        LV G     +  EA  L+++M + G  P     
Sbjct: 172 GRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTY 231

Query: 280 RVALERMQEMGFIQGANEFLREMLPDKRIK--NVRY-------YEDGSDDDEDE--NDDN 328
              L  M + G    A E LR+M  ++ IK   V+Y        + GS D+     N+  
Sbjct: 232 GPVLNVMCKSGQTALAMELLRKM-EERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEME 290

Query: 329 NSGVR---IAYGVQLKP------WLDPKALANTL--DEWSPEVV--SLLADAKFVWTTRL 375
             G+    I Y + +        W D   L   +   + +P VV  S+L D+ FV   +L
Sbjct: 291 MKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDS-FVKEGKL 349

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
                   ++ E             G   D      ++    +  H++  ++++  + S 
Sbjct: 350 R-------EAEELHKEMI-----HRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSK 397

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR 495
           G      T  ++I+ Y  + + D  L+ F    +L G ++     + Y++L++   +  +
Sbjct: 398 GCDPNIRTFNILINGYCKANRIDDGLELFRK-MSLRGVVAD---TVTYNTLIQGFCELGK 453

Query: 496 DFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV 555
              A  + +EM+   + P++ T+  L+      G+ +   ++F  + ++ +E D  ++ +
Sbjct: 454 LNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNI 513

Query: 556 LIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIN 603
           +I   C              L    + P   T  ++   L K+G   EA  +  + E+  
Sbjct: 514 IIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDG 573

Query: 604 DVP-----SLALRGHI 614
             P     ++ +R H+
Sbjct: 574 HAPDGWTYNILIRAHL 589


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 1/153 (0%)

Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
           GDL    S + E   +    +  ++  ++S Y K  +  +A + + ++ID G  PN  T+
Sbjct: 449 GDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTF 508

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
           T +I  L +  K+  A E+F  L   +IK T   Y +L+EG+    + D+A  LL +M  
Sbjct: 509 TALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQ 568

Query: 271 DGKFPGR-AMRVALERMQEMGFIQGANEFLREM 302
            G  P     R  +  +   G +  A +F+ ++
Sbjct: 569 KGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDL 601



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 1/139 (0%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           +V + +++  YS  G  +     W+         +  +Y  +M+   K G+   A   F+
Sbjct: 680 NVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFK 739

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           ++      PNS TY   +++L   G +  A+ +  A+ L  +   +  + I++ GF  + 
Sbjct: 740 RMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAM-LKGLLANTVTHNIIIRGFCKLG 798

Query: 257 RFDEAKSLLNEMRDDGKFP 275
           RF EA  +L+EM ++G FP
Sbjct: 799 RFHEATKVLSEMTENGIFP 817



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 39/76 (51%)

Query: 486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
           ++R   K  R  +A  VL EM  +GI PD  T+S L+Y +   G+     KL+  +   G
Sbjct: 790 IIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRG 849

Query: 546 VEPDAYMFKVLIQAYC 561
           +EPD   + +LI   C
Sbjct: 850 LEPDLVAYNLLIYGCC 865



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 82/404 (20%), Positives = 146/404 (36%), Gaps = 91/404 (22%)

Query: 209 TYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           TY V+I  L    ++  A+EV  +L    +      Y  LV GF  +++F+    L++EM
Sbjct: 262 TYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEM 321

Query: 269 RDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYE-------DGSDD 320
            + G  P  A    L + +++ G I  A E + ++     + N+  Y         G D 
Sbjct: 322 VELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDL 381

Query: 321 DEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVL 380
           D+ E   +N  +     + L+P              +    S+L D+ F  + RL     
Sbjct: 382 DKAELLYSNMSL-----MNLRP--------------NGITYSILIDS-FCRSGRL----- 416

Query: 381 RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP 440
                 + A  +F  +  Q G    VYA   ++    + G +   + L  ++ + G+   
Sbjct: 417 ------DVAISYFDRMI-QDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPT 469

Query: 441 FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAI 500
            +T   +I  Y    +   A K ++                                   
Sbjct: 470 ATTFTSLISGYCKDLQVQKAFKLYN----------------------------------- 494

Query: 501 NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
               +MI +GI P+V TF+ L+             +LF  + +  ++P    + VLI+ Y
Sbjct: 495 ----KMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGY 550

Query: 561 CK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           C+             +    L+PD  T   L   L   GR  +A
Sbjct: 551 CRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKA 594



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 42/89 (47%)

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           K GK  +A E   +V   G +PN   Y  +I  L   G LD A  ++S + LM ++    
Sbjct: 342 KQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGI 401

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDG 272
            Y IL++ F    R D A S  + M  DG
Sbjct: 402 TYSILIDSFCRSGRLDVAISYFDRMIQDG 430



 Score = 46.2 bits (108), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 32/154 (20%), Positives = 65/154 (42%), Gaps = 10/154 (6%)

Query: 126 GDISSSKFLNV----------SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
           GD+S+++ L +          +  F +L+  Y     ++     +N+        +  ++
Sbjct: 449 GDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTF 508

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
             ++S    T K  EA E F ++++    P   TY V+IE     GK+D A E+   +  
Sbjct: 509 TALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQ 568

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
             +   +  Y  L+ G     R  +AK  ++++ 
Sbjct: 569 KGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLH 602



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 2/114 (1%)

Query: 160 WNEYRQRAKLLSTE-SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
           ++E  +R K+  TE +YN+++  Y + GK  +A E    +  +G +P++ TY  +I  L 
Sbjct: 528 FDELVER-KIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLC 586

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           + G++  A +    L    +K     Y  L+ G+    R  EA S   EM   G
Sbjct: 587 STGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRG 640



 Score = 42.4 bits (98), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 82/194 (42%), Gaps = 21/194 (10%)

Query: 422 VELVDRLIAK-----LRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK 476
            EL D L AK     + ++G  L   T  ++I  +G+ K  D   +A    R+L G    
Sbjct: 236 CELKDFLRAKEKIRWMEANGFDLSIVTYNVLI--HGLCK-GDRVSEAVEVKRSLGGK-GL 291

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
              ++ Y +L+    + ++    I +++EM+  G  P     SGL+     QG      +
Sbjct: 292 AADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYE 351

Query: 537 LFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLW 584
           L   V + G  P+ +++  LI + CK             +S  NL P+  T  +L  S  
Sbjct: 352 LVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFC 411

Query: 585 KEGRRKEAAAVEER 598
           + GR   A +  +R
Sbjct: 412 RSGRLDVAISYFDR 425



 Score = 40.8 bits (94), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 23/110 (20%), Positives = 53/110 (48%)

Query: 166 RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
           +  L +T ++NI++  + K G+  EA +   ++ + G  P+  TY+ +I      G + +
Sbjct: 778 KGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGA 837

Query: 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +++++  +    ++     Y +L+ G       D+A  L ++M   G  P
Sbjct: 838 SVKLWDTMLNRGLEPDLVAYNLLIYGCCVNGELDKAFELRDDMLRRGIIP 887


>gi|224127568|ref|XP_002329310.1| predicted protein [Populus trichocarpa]
 gi|222870764|gb|EEF07895.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 106/263 (40%), Gaps = 40/263 (15%)

Query: 366 DAKFVWTTRLVCKVLRHF----KSPETAWHFFCWV-AYQPGYTHDVYALEKMLTILARHG 420
           D   + TT  V +VL H     +SP  +W  F W+ +  P Y H + +   ML IL +H 
Sbjct: 39  DYHLITTTATVRQVLLHLSLYDQSPCLSWALFKWIESSVPNYKHSLQSSWTMLYILTKHK 98

Query: 421 HVELVDRLIAKLR-----------------SDGMRLPFSTIRLIIDFYGISKKADAALKA 463
           H +     +  +                   D   +    +  ++  YG SK    A++ 
Sbjct: 99  HFKTAHAFLENIAFKDFLSTQSVLSSLVKIHDDPDVNSHVLSWLVIVYGNSKMTHEAIQV 158

Query: 464 FHDDRTLCGPISKFKLMLLYSS-LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
           F   R     ++ F+  L   + LL +L K +       + ++M+  G+V ++  ++ L+
Sbjct: 159 FEHMR-----VNGFRPHLHACTVLLNSLAKDRLTDTVWKIYKKMVKLGVVANIHVYNVLL 213

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLM 570
           +     GD +  +K+ S +    V PD + +  LI  YCK             +  + + 
Sbjct: 214 HACCKSGDVEKAEKVLSEMELKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEMAGIS 273

Query: 571 PDAATKELLKKSLWKEGRRKEAA 593
           PD  T   L     +EGR +EA 
Sbjct: 274 PDIFTYNSLIYGFCREGRMREAV 296



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 102/247 (41%), Gaps = 19/247 (7%)

Query: 68  DPFIVTHALR-------SAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHE 120
           DP + +H L        ++     A+ + E ++ N    H    LHA  TVL  S     
Sbjct: 131 DPDVNSHVLSWLVIVYGNSKMTHEAIQVFEHMRVNGFRPH----LHA-CTVLLNSLAKDR 185

Query: 121 LKTLIGDISSSKF-LNVSVN---FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYN 176
           L   +  I      L V  N   +  L+     SGD+E      +E   +       +YN
Sbjct: 186 LTDTVWKIYKKMVKLGVVANIHVYNVLLHACCKSGDVEKAEKVLSEMELKCVFPDLFTYN 245

Query: 177 IVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM 236
            ++S+Y K G ++EA+    ++   G  P+  TY  +I      G++  A+++F  +   
Sbjct: 246 TLISLYCKKGMHYEALSVQDRMEMAGISPDIFTYNSLIYGFCREGRMREAVQLFRDIK-- 303

Query: 237 RIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGA 295
            +      Y  L++G+  V   DEA  L   M + G +P        L ++ E G ++ A
Sbjct: 304 DVTPNHVTYTSLIDGYCRVNDLDEALRLKEVMSEKGLYPTVITYNSILRKLCEGGRLRDA 363

Query: 296 NEFLREM 302
           N  L EM
Sbjct: 364 NILLNEM 370



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 87/204 (42%), Gaps = 18/204 (8%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G+   ++A   +L  LA+    + V ++  K+   G+        +++     S   + A
Sbjct: 166 GFRPHLHACTVLLNSLAKDRLTDTVWKIYKKMVKLGVVANIHVYNVLLHACCKSGDVEKA 225

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
            K   +    C     F  +  Y++L+    K    ++A++V + M  +GI PD+ T++ 
Sbjct: 226 EKVLSEMELKC----VFPDLFTYNTLISLYCKKGMHYEALSVQDRMEMAGISPDIFTYNS 281

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSN 568
           L+Y F  +G  +   +LF  ++   V P+   +  LI  YC+             +S   
Sbjct: 282 LIYGFCREGRMREAVQLFRDIKD--VTPNHVTYTSLIDGYCRVNDLDEALRLKEVMSEKG 339

Query: 569 LMPDAATKELLKKSLWKEGRRKEA 592
           L P   T   + + L + GR ++A
Sbjct: 340 LYPTVITYNSILRKLCEGGRLRDA 363



 Score = 42.0 bits (97), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 59/138 (42%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V + +L+  Y    DL+  L       ++    +  +YN ++    + G+  +A     +
Sbjct: 310 VTYTSLIDGYCRVNDLDEALRLKEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNE 369

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + +    P++ T   +I     +G + SAL+V   +    +K     Y  L+ GF   + 
Sbjct: 370 MSERKIEPDNVTCNTLINAYCKIGDMRSALKVKDKMVGAGLKLDQFTYKALIHGFCKAKE 429

Query: 258 FDEAKSLLNEMRDDGKFP 275
            D+AK LL  M D G  P
Sbjct: 430 IDKAKELLFGMMDAGFSP 447



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 45/233 (19%), Positives = 96/233 (41%), Gaps = 2/233 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D AL + E + S         T +++   L +  R  +   L+ ++S  K    +V    
Sbjct: 326 DEALRLKEVM-SEKGLYPTVITYNSILRKLCEGGRLRDANILLNEMSERKIEPDNVTCNT 384

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  Y   GD+   L   ++       L   +Y  ++  + K  +  +A E    ++D G
Sbjct: 385 LINAYCKIGDMRSALKVKDKMVGAGLKLDQFTYKALIHGFCKAKEIDKAKELLFGMMDAG 444

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  TY+ +++        ++ +++   L    +      Y  L+  F  +E+ D A+
Sbjct: 445 FSPSYCTYSWLVDSYCKQQNEEAVIKLPDELVRRGLCVDVSVYRALIRRFCKIEKIDCAQ 504

Query: 263 SLLNEMRDDGKFPGRAMRVALER-MQEMGFIQGANEFLREMLPDKRIKNVRYY 314
            +L  M+D G F    +  +L     ++G +   ++ L EM   + +  ++ Y
Sbjct: 505 RVLGLMKDKGIFGDSVVYTSLAYGYWKVGKVNVTSDILDEMYKKRLMITLKIY 557



 Score = 40.8 bits (94), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 44/86 (51%)

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
           +  ++ Y+S+LR L +  R  DA  +L EM    I PD  T + L+  +   GD +   K
Sbjct: 341 YPTVITYNSILRKLCEGGRLRDANILLNEMSERKIEPDNVTCNTLINAYCKIGDMRSALK 400

Query: 537 LFSMVRQNGVEPDAYMFKVLIQAYCK 562
           +   +   G++ D + +K LI  +CK
Sbjct: 401 VKDKMVGAGLKLDQFTYKALIHGFCK 426


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 120/565 (21%), Positives = 219/565 (38%), Gaps = 55/565 (9%)

Query: 37  LRRAQLIDSIRLAVRSNSSNSLSSLLNDR-LLDPFIVTHA----LRSAPNADSALSIMEA 91
           L RA L    R +  ++  ++L S+L DR LLD  +   A    LR  PN  +   I+  
Sbjct: 107 LHRAALALGPRRSALASVVDTLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLR 166

Query: 92  LKSNPNF-----------SHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNF 140
           L  + +            + N  T + +   L K     E ++L   +     L   V F
Sbjct: 167 LARDRSGRLVRRLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTF 226

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
            +L+  Y   G+L+ V     E R+        +YN +++ + K G+   A   F  +  
Sbjct: 227 NSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKR 286

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
           EG + N  T++  ++     G +  A+++F+ + +  +      Y  L++G     R D+
Sbjct: 287 EGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDD 346

Query: 261 AKSLLNEMRD--------------DGKFPGRAMRVALE--RMQEMGFIQGANEFLREMLP 304
           A  LL+EM                DG    R +  A +  RM E   ++ ANE L   L 
Sbjct: 347 AIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVR-ANELLYTTLI 405

Query: 305 DKRIKNVRYYEDGSDDDEDEN-----DDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPE 359
                N    +      E +N     D +  G  I     +    + K+L   +DE   E
Sbjct: 406 HGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLE 465

Query: 360 VVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH 419
                    ++  T ++    +  K PE             G+  +V     ++  L + 
Sbjct: 466 -------PNYIIYTTMMDACFKSGKVPEAIAML--QKILDSGFQPNVITYCALIDGLCKA 516

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA--DAALKAFHDDRTLCGPISKF 477
           G ++       K+R  G+         ++D  G+ K    + A++ F++       + K 
Sbjct: 517 GSIDEAISHFNKMRDLGLDPNVQAYTALVD--GLCKNGCLNEAVQLFNEMVHKGMSLDK- 573

Query: 478 KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL 537
              ++Y++LL    K     DA  +  +MI SG+  D+  ++  +  F         +++
Sbjct: 574 ---VVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREV 630

Query: 538 FSMVRQNGVEPDAYMFKVLIQAYCK 562
           FS +  +G+ PD  ++  LI  Y K
Sbjct: 631 FSEMIGHGIAPDRAVYNCLISKYQK 655



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 5/222 (2%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           A S L+ M+     PN+    + + A      KS +  E   ++  I  S F    + + 
Sbjct: 452 AKSLLTKMDESGLEPNYIIYTTMMDACF----KSGKVPEAIAMLQKILDSGFQPNVITYC 507

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            L+     +G ++  +S +N+ R      + ++Y  ++    K G   EAV+ F +++ +
Sbjct: 508 ALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHK 567

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G   +   YT +++  +  G L  A  + + +    ++     Y   + GF  +    EA
Sbjct: 568 GMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEA 627

Query: 262 KSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
           + + +EM   G  P RA+    + + Q++G ++ A     EM
Sbjct: 628 REVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEM 669



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 100/229 (43%), Gaps = 19/229 (8%)

Query: 383 FKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFS 442
           F   ETA+ +F  +  + G   +V      +    + G V    +L A++R  GM L   
Sbjct: 271 FGRMETAYGYFAAMKRE-GVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEF 329

Query: 443 TIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINV 502
           T   +ID    + + D A+    +      P++    ++ Y+ L+  L K ++  +A +V
Sbjct: 330 TYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLN----VVTYTVLVDGLCKERKVAEAEDV 385

Query: 503 LEEMIFSGIVPDVQTFSGLMY-HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           L  M  +G+  +   ++ L++ HF  +  EK +  L S ++  G+E D  ++  LIQ  C
Sbjct: 386 LRMMEKAGVRANELLYTTLIHGHFMNKNSEKAL-GLLSEMKNKGLELDISLYGALIQGLC 444

Query: 562 KY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
                         +  S L P+      +  + +K G+  EA A+ ++
Sbjct: 445 NVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQK 493



 Score = 43.5 bits (101), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 12/95 (12%)

Query: 510 GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------ 563
           G +PDV TF+ L+  +   G+   V++L   +R++G + D   +  LI  +CK+      
Sbjct: 218 GCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETA 277

Query: 564 ------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                 +    +M +  T      +  KEG  +EA
Sbjct: 278 YGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREA 312


>gi|414864940|tpg|DAA43497.1| TPA: hypothetical protein ZEAMMB73_100357 [Zea mays]
          Length = 816

 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 91/462 (19%), Positives = 190/462 (41%), Gaps = 61/462 (13%)

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           +LVL  W E           +Y  +++V  + G+ + A+     +   G +P+  T +++
Sbjct: 153 DLVLRLWYEMHSFGVAPDNSTYGTLINVCCQGGREWTALLWLGDMCKRGLMPDEVTMSIV 212

Query: 214 IEHLVNLGKLDSA---LEVFSALPLMRIKRTSK----QYLILVEGFVGVERFDEAKSLLN 266
           ++     G+ ++A    E +S+  + R++  S      Y  L++ +      ++     N
Sbjct: 213 MQAHKKAGEYETAEIFFERWSSDSIRRMEGRSHYNLYTYNTLIDTYGKAGHLEKVSDTFN 272

Query: 267 EMRDDGKFPGRAMRVAL-------ERMQEMG-FIQGANEFLREMLPDKRIKNV--RYYED 316
           +M  +G  P      ++        RM+++   ++   EF  +  PD R  N+    Y +
Sbjct: 273 QMLSEGVAPSVVTFNSMIHAWGKHHRMEKVASLVRMMEEF--QCFPDTRTYNILIALYRE 330

Query: 317 GSDDD-----------EDENDDNNSGVRIAYGVQLKPWL-DPKALANTLDEWSPEVVSLL 364
             D D           E+   D  S   + YG  ++  +   +AL   +DE        +
Sbjct: 331 SDDIDIAEYYYWKMKTENLVPDVVSCRTLLYGYSIRGMVTKAEALLKEMDE-----RGFM 385

Query: 365 ADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYA--LEKMLTILARHGHV 422
            D    +T   + ++  +    E AW +F        + H + +      +      G++
Sbjct: 386 VDE---YTQSALTRMYVNVGMLEQAWRWF------DRFHHHMNSECFSANIDAFGEKGYI 436

Query: 423 ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM-- 480
            L ++         M +  S   ++I  YG+    D A +       +   + ++ ++  
Sbjct: 437 VLAEKAFVCCLKKKM-ISVSACNVMIKAYGLVGMLDEACE-------IANGMERYDILPD 488

Query: 481 -LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
            + Y+SL++ L+  K    AI  LE+M    ++ D   +S ++  FA  GD ++ + LF 
Sbjct: 489 YVTYTSLIQLLSTAKLPKKAIYYLEKMKVVKLLSDCIPYSVVISSFAKNGDLRMSEYLFR 548

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKK 581
            +  +GV PD +++ +LI AY +     N+   +A   L+KK
Sbjct: 549 EMIMSGVRPDIFVYSILIDAYAEV---GNVQQASAYFGLMKK 587


>gi|414864941|tpg|DAA43498.1| TPA: hypothetical protein ZEAMMB73_100357 [Zea mays]
          Length = 788

 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 91/462 (19%), Positives = 190/462 (41%), Gaps = 61/462 (13%)

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           +LVL  W E           +Y  +++V  + G+ + A+     +   G +P+  T +++
Sbjct: 153 DLVLRLWYEMHSFGVAPDNSTYGTLINVCCQGGREWTALLWLGDMCKRGLMPDEVTMSIV 212

Query: 214 IEHLVNLGKLDSA---LEVFSALPLMRIKRTSK----QYLILVEGFVGVERFDEAKSLLN 266
           ++     G+ ++A    E +S+  + R++  S      Y  L++ +      ++     N
Sbjct: 213 MQAHKKAGEYETAEIFFERWSSDSIRRMEGRSHYNLYTYNTLIDTYGKAGHLEKVSDTFN 272

Query: 267 EMRDDGKFPGRAMRVAL-------ERMQEMG-FIQGANEFLREMLPDKRIKNV--RYYED 316
           +M  +G  P      ++        RM+++   ++   EF  +  PD R  N+    Y +
Sbjct: 273 QMLSEGVAPSVVTFNSMIHAWGKHHRMEKVASLVRMMEEF--QCFPDTRTYNILIALYRE 330

Query: 317 GSDDD-----------EDENDDNNSGVRIAYGVQLKPWL-DPKALANTLDEWSPEVVSLL 364
             D D           E+   D  S   + YG  ++  +   +AL   +DE        +
Sbjct: 331 SDDIDIAEYYYWKMKTENLVPDVVSCRTLLYGYSIRGMVTKAEALLKEMDE-----RGFM 385

Query: 365 ADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYA--LEKMLTILARHGHV 422
            D    +T   + ++  +    E AW +F        + H + +      +      G++
Sbjct: 386 VDE---YTQSALTRMYVNVGMLEQAWRWF------DRFHHHMNSECFSANIDAFGEKGYI 436

Query: 423 ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM-- 480
            L ++         M +  S   ++I  YG+    D A +       +   + ++ ++  
Sbjct: 437 VLAEKAFVCCLKKKM-ISVSACNVMIKAYGLVGMLDEACE-------IANGMERYDILPD 488

Query: 481 -LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
            + Y+SL++ L+  K    AI  LE+M    ++ D   +S ++  FA  GD ++ + LF 
Sbjct: 489 YVTYTSLIQLLSTAKLPKKAIYYLEKMKVVKLLSDCIPYSVVISSFAKNGDLRMSEYLFR 548

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKK 581
            +  +GV PD +++ +LI AY +     N+   +A   L+KK
Sbjct: 549 EMIMSGVRPDIFVYSILIDAYAEV---GNVQQASAYFGLMKK 587


>gi|357118215|ref|XP_003560853.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Brachypodium distachyon]
          Length = 597

 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 5/118 (4%)

Query: 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217
           + W E R  A      +Y+ ++  +  T     A+E F +++DEG  P++  Y  MI  L
Sbjct: 309 TVWPEARGNAV-----TYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMISGL 363

Query: 218 VNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              G+LD A  + +++     +  +K Y IL+ GF   +R +EA  LL EM++ G  P
Sbjct: 364 TQAGRLDDAWSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQP 421



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 38/80 (47%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+    + KR  +A  +L EM  +G+ PDV T++ L+      GD   V +L   + 
Sbjct: 391 YNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKMI 450

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
             G  P    F  LI  YCK
Sbjct: 451 DGGCRPSVVTFGTLIHGYCK 470



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 85/398 (21%), Positives = 148/398 (37%), Gaps = 54/398 (13%)

Query: 176 NIVMSVYAKTGKNFEAV----ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
           N ++    KTG+  +AV    E  R V   G  PN+ TY  +       G +  A E+ +
Sbjct: 213 NNIVDGLCKTGRLQQAVKFVEERMRSV--HGCAPNTVTYNCLAHAFCRAGNVGMACELVA 270

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVER-------FDEAKSLLNEMRDDGKFPGRAMRVALE 284
            +   R+   +     +V G   V R       F E +++  E R +       +  A  
Sbjct: 271 KMEKERVTPNAVTLNTIVGGLCWVGRVGAALEFFREKRTVWPEARGNA-VTYSTLVGAFL 329

Query: 285 RMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWL 344
               +G    A E   EM+                 DE  + D      +  G+     L
Sbjct: 330 HTNNVGV---AMELFHEMV-----------------DEGNSPDAIMYFTMISGLTQAGRL 369

Query: 345 DPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHF---KSPETAWHFFCWVAYQPG 401
           D        D WS  + + +  A F    +    ++  F   K    A+     +  + G
Sbjct: 370 D--------DAWS--MATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMK-EAG 418

Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL 461
              DVY    +L+ L + G    VD L+ K+   G R    T   +I  Y    + D AL
Sbjct: 419 LQPDVYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEAL 478

Query: 462 KAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           + F   D +   P +     ++Y++L+  L K +    AI + +EM    +  +V TF+ 
Sbjct: 479 RIFRSMDESGIQPNT-----VIYNTLIDFLCKSRDTSLAIELFDEMREKHVPANVTTFNA 533

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           L+     +   +   +L  ++R+    PD     +L++
Sbjct: 534 LLKGLRDKNMPEKAFELMDLMREGRCTPDYVTIDILME 571



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 72/174 (41%), Gaps = 19/174 (10%)

Query: 446 LIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEE 505
           L   ++G    + A L +      L  P  +    LLY  L R+ +      DA   L +
Sbjct: 70  LAAPYHGFDPASLALLFSLPSCHRLPPPSPRILSALLYKILSRSPSSSA---DAARFLRD 126

Query: 506 MIFSGIVP-DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK-- 562
            + +G  P D   F+ L+   A  GD   + +LF+ +R   V P+   + +L++  CK  
Sbjct: 127 SLAAGAPPPDTSAFNTLLDALAQAGDLPGMTQLFASMRDASVRPNVVTYGILVKGLCKAG 186

Query: 563 ----YLS--------NSNLMPDAATKELLKKSLWKEGRRKEAAA-VEERCEKIN 603
                LS         S++ PD      +   L K GR ++A   VEER   ++
Sbjct: 187 RVGDALSVLDGMSGPESDVCPDVVMLNNIVDGLCKTGRLQQAVKFVEERMRSVH 240



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 40/201 (19%), Positives = 80/201 (39%), Gaps = 1/201 (0%)

Query: 70  FIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDIS 129
           F +   L  A   D A S+  ++K    F  +    + L     + +R +E   L+G++ 
Sbjct: 357 FTMISGLTQAGRLDDAWSMATSMKKA-GFQLDAKAYNILIGGFCRRKRLNEAYELLGEMK 415

Query: 130 SSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF 189
            +        +  L+     +GD   V     +        S  ++  ++  Y K G+  
Sbjct: 416 EAGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCRPSVVTFGTLIHGYCKVGQID 475

Query: 190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV 249
           EA+  FR + + G  PN+  Y  +I+ L        A+E+F  +    +      +  L+
Sbjct: 476 EALRIFRSMDESGIQPNTVIYNTLIDFLCKSRDTSLAIELFDEMREKHVPANVTTFNALL 535

Query: 250 EGFVGVERFDEAKSLLNEMRD 270
           +G       ++A  L++ MR+
Sbjct: 536 KGLRDKNMPEKAFELMDLMRE 556



 Score = 44.3 bits (103), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 483 YSSLLRTLTKCKRDFDAIN-VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
           Y++LL  L K   DF A++ +L +MI  G  P V TF  L++ +   G      ++F  +
Sbjct: 426 YNTLLSGLCKAG-DFLAVDELLGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRSM 484

Query: 542 RQNGVEPDAYMFKVLIQAYCK 562
            ++G++P+  ++  LI   CK
Sbjct: 485 DESGIQPNTVIYNTLIDFLCK 505



 Score = 42.7 bits (99), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 14/117 (11%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           +T +YN +   + + G    A E   ++  E   PN+ T   ++  L  +G++ +ALE F
Sbjct: 245 NTVTYNCLAHAFCRAGNVGMACELVAKMEKERVTPNAVTLNTIVGGLCWVGRVGAALEFF 304

Query: 231 SALPLMRIKRT--------SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM 279
                 R KRT        +  Y  LV  F+       A  L +EM D+G  P   M
Sbjct: 305 ------REKRTVWPEARGNAVTYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIM 355



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 82/201 (40%), Gaps = 17/201 (8%)

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
             R G+V +   L+AK+  + +     T+  I+       +  AAL+ F + RT+  P +
Sbjct: 256 FCRAGNVGMACELVAKMEKERVTPNAVTLNTIVGGLCWVGRVGAALEFFREKRTV-WPEA 314

Query: 476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ 535
           +    + YS+L+           A+ +  EM+  G  PD   +  ++      G      
Sbjct: 315 RGN-AVTYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMISGLTQAGRLDDAW 373

Query: 536 KLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSL 583
            + + +++ G + DA  + +LI  +C+             +  + L PD  T   L   L
Sbjct: 374 SMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGL 433

Query: 584 WKEGRRKEAAAVEERCEKIND 604
            K G   +  AV+E   K+ D
Sbjct: 434 CKAG---DFLAVDELLGKMID 451


>gi|356519580|ref|XP_003528450.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Glycine max]
          Length = 1012

 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 99/488 (20%), Positives = 199/488 (40%), Gaps = 85/488 (17%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVID-EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           +Y  ++  + K G + E  ET  Q ++ E  +PN  T++ +I      G L+ A+EV   
Sbjct: 378 TYTALLDGHCKVG-DVEFAETVLQKMEKEHVLPNVVTFSSIINGYAKKGMLNKAVEVLRK 436

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGF 291
           +  M I      Y IL++G+    + + A     EM+  G      +  + L  ++  G 
Sbjct: 437 MVQMNIMPNVFVYAILLDGYFRTGQHEAAAGFYKEMKSWGLEENNIIFDILLNNLKRSGG 496

Query: 292 IQGANEFLREMLPDKRIKNV--------RYYEDGSDD------DEDENDDNNSGVRIAYG 337
           ++ A   ++++L      +V         Y+++G++        E    D    V +AY 
Sbjct: 497 MKEAQSLIKDILSKGIYLDVFNYSSLMDGYFKEGNESAALSVVQEMTEKDMQFDV-VAYN 555

Query: 338 VQLKPWL-----DPKALANTLDEW--SPEVVSL--LADAKFV-WTTRLVCKVLRHFKSPE 387
              K  L     +PK++ + + E   +P+ V+   + +  F+   T     +L   KS  
Sbjct: 556 ALTKGLLRLGKYEPKSVFSRMIELGLTPDCVTYNSVMNTYFIQGKTENALDLLNEMKSYG 615

Query: 388 TAWHFFCWVAYQPGYTHDVYALEKMLTIL----------------------ARHGHVELV 425
              +   +     G      A+EK++++L                      +R    + +
Sbjct: 616 VMPNMVTYNILIGGLCK-TGAIEKVISVLHEMLAVGYVPTPIIHKFLLKAYSRSRKADAI 674

Query: 426 DRLIAKLRSDGMRLP---FSTIRLIIDFYGISKKADAAL-----KAFHDDRTLCGPISKF 477
            ++  KL   G+ L    ++T+  ++   G++KKA+  L     K    D          
Sbjct: 675 LQIHKKLVDMGLNLNQMVYNTLITVLCRLGMTKKANVVLTEMVIKGISAD---------- 724

Query: 478 KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL 537
             ++ Y++L+R          A N   +M+ SGI P++ T++ L+   +  G  +   KL
Sbjct: 725 --IVTYNALIRGYCTGSHVEKAFNTYSQMLVSGISPNITTYNALLEGLSTNGLMRDADKL 782

Query: 538 FSMVRQNGVEPDAYMFKVL-------------IQAYCKYLSNSNLMPDAATKELLKKSLW 584
            S +R+ G+ P+A  + +L             I+ YC+ ++    +P   T  +L +   
Sbjct: 783 VSEMRERGLVPNATTYNILVSGHGRVGNKRDSIKLYCEMITKG-FIPTTGTYNVLIQDYA 841

Query: 585 KEGRRKEA 592
           K G+ ++A
Sbjct: 842 KAGKMRQA 849



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/240 (18%), Positives = 104/240 (43%), Gaps = 14/240 (5%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           AD+ L I + L  +   + NQ   + L TVL +     +   ++ ++         V + 
Sbjct: 671 ADAILQIHKKL-VDMGLNLNQMVYNTLITVLCRLGMTKKANVVLTEMVIKGISADIVTYN 729

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            L++ Y T   +E   +T+++        +  +YN ++   +  G   +A +   ++ + 
Sbjct: 730 ALIRGYCTGSHVEKAFNTYSQMLVSGISPNITTYNALLEGLSTNGLMRDADKLVSEMRER 789

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G +PN+ TY +++     +G    +++++  +       T+  Y +L++ +    +  +A
Sbjct: 790 GLVPNATTYNILVSGHGRVGNKRDSIKLYCEMITKGFIPTTGTYNVLIQDYAKAGKMRQA 849

Query: 262 KSLLNEMRDDGKFPGR-------------AMRVALERMQEMGFIQGANEFLREMLPDKRI 308
           + LLNEM   G+ P               + +  ++R+ ++ +   A + LREM     +
Sbjct: 850 RELLNEMLTRGRIPNSSTYDVLICGWCKLSCQPEMDRLLKLSYQNEAKKLLREMCEKGHV 909



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 3/165 (1%)

Query: 112 LAKSQRNHELKTLIGDI-SSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLL 170
           L +S    E ++LI DI S   +L+V  N+ +LM  Y   G+    LS   E  ++    
Sbjct: 491 LKRSGGMKEAQSLIKDILSKGIYLDV-FNYSSLMDGYFKEGNESAALSVVQEMTEKDMQF 549

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
              +YN +     + GK +E    F ++I+ G  P+  TY  ++      GK ++AL++ 
Sbjct: 550 DVVAYNALTKGLLRLGK-YEPKSVFSRMIELGLTPDCVTYNSVMNTYFIQGKTENALDLL 608

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           + +    +      Y IL+ G       ++  S+L+EM   G  P
Sbjct: 609 NEMKSYGVMPNMVTYNILIGGLCKTGAIEKVISVLHEMLAVGYVP 653



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 17/148 (11%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           +++L+    K +   D  ++ E+MI SG++PDV T S ++Y     G       L   + 
Sbjct: 239 WTTLIAAYCKHRGIDDFFSLYEQMIMSGVMPDVVTCSSILYGLCRHGKLTEAAMLLREMY 298

Query: 543 QNGVEPDAYMFKVLIQAYCK-------YLSNSNLMPDAATKEL-----LKKSLWKEGRRK 590
             G++P+   +  +I A  K       +   S ++    + +L     +   L+K G+ K
Sbjct: 299 NMGLDPNHVSYTTIISALLKSGRVMEAFNHQSQMVVRGISIDLVLCTTMMDGLFKAGKSK 358

Query: 591 EAAAVEERCEKINDVPSLA-----LRGH 613
           EA  + +   K+N VP+       L GH
Sbjct: 359 EAEEMFQTILKLNLVPNCVTYTALLDGH 386



 Score = 42.4 bits (98), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 30/163 (18%), Positives = 74/163 (45%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L K+ ++ E + +   I     +   V +  L+  +   GD+E   +   +  +   L +
Sbjct: 351 LFKAGKSKEAEEMFQTILKLNLVPNCVTYTALLDGHCKVGDVEFAETVLQKMEKEHVLPN 410

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
             +++ +++ YAK G   +AVE  R+++    +PN   Y ++++     G+ ++A   + 
Sbjct: 411 VVTFSSIINGYAKKGMLNKAVEVLRKMVQMNIMPNVFVYAILLDGYFRTGQHEAAAGFYK 470

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
            +    ++  +  + IL+          EA+SL+ ++   G +
Sbjct: 471 EMKSWGLEENNIIFDILLNNLKRSGGMKEAQSLIKDILSKGIY 513



 Score = 42.0 bits (97), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 11/110 (10%)

Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           D+I +  EMI  G +P   T++ L+  +A  G  +  ++L + +   G  P++  + VLI
Sbjct: 813 DSIKLYCEMITKGFIPTTGTYNVLIQDYAKAGKMRQARELLNEMLTRGRIPNSSTYDVLI 872

Query: 558 QAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
             +CK      L        LLK S   E ++     + E CEK   VPS
Sbjct: 873 CGWCK------LSCQPEMDRLLKLSYQNEAKK----LLREMCEK-GHVPS 911



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 33/128 (25%)

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGD----EKIVQKLFSMVRQN--------GV 546
           A++++E+   +G+ PD+ T++ L+  F  +GD    E +V ++    R +        GV
Sbjct: 164 ALDLVEDGWKNGVKPDIVTYNTLVNAFCKRGDLAKAESVVNEILGFRRDDESGVLNDCGV 223

Query: 547 E---------PDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWK 585
           E         P    +  LI AYCK+            +  S +MPD  T   +   L +
Sbjct: 224 ETWDGLRDLQPTVVTWTTLIAAYCKHRGIDDFFSLYEQMIMSGVMPDVVTCSSILYGLCR 283

Query: 586 EGRRKEAA 593
            G+  EAA
Sbjct: 284 HGKLTEAA 291



 Score = 40.4 bits (93), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 1/142 (0%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SY  ++S   K+G+  EA     Q++  G   +    T M++ L   GK   A E+F  +
Sbjct: 308 SYTTIISALLKSGRVMEAFNHQSQMVVRGISIDLVLCTTMMDGLFKAGKSKEAEEMFQTI 367

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA-MRVALERMQEMGFI 292
             + +      Y  L++G   V   + A+++L +M  +   P        +    + G +
Sbjct: 368 LKLNLVPNCVTYTALLDGHCKVGDVEFAETVLQKMEKEHVLPNVVTFSSIINGYAKKGML 427

Query: 293 QGANEFLREMLPDKRIKNVRYY 314
             A E LR+M+    + NV  Y
Sbjct: 428 NKAVEVLRKMVQMNIMPNVFVY 449



 Score = 38.9 bits (89), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 38/193 (19%), Positives = 83/193 (43%), Gaps = 1/193 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           ++AL ++  +KS      N  T + L   L K+    ++ +++ ++ +  ++   +    
Sbjct: 602 ENALDLLNEMKSY-GVMPNMVTYNILIGGLCKTGAIEKVISVLHEMLAVGYVPTPIIHKF 660

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L++ YS S   + +L    +       L+   YN +++V  + G   +A     +++ +G
Sbjct: 661 LLKAYSRSRKADAILQIHKKLVDMGLNLNQMVYNTLITVLCRLGMTKKANVVLTEMVIKG 720

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
              +  TY  +I        ++ A   +S + +  I      Y  L+EG        +A 
Sbjct: 721 ISADIVTYNALIRGYCTGSHVEKAFNTYSQMLVSGISPNITTYNALLEGLSTNGLMRDAD 780

Query: 263 SLLNEMRDDGKFP 275
            L++EMR+ G  P
Sbjct: 781 KLVSEMRERGLVP 793


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 91/482 (18%), Positives = 194/482 (40%), Gaps = 62/482 (12%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+      G +E       ++ +   +     YN  ++ Y + G   +A+ T  ++   G
Sbjct: 357 LLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFG 416

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             PNS T+  +I+   ++ ++D A E    +    +  + + Y  L++G+  +  FD   
Sbjct: 417 LRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCF 476

Query: 263 SLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYE---DGS 318
            +L +M + G  P      +L   + + G I  A   LR+M+    + N + Y    DGS
Sbjct: 477 QILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGS 536

Query: 319 DDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVS--LLADAKFVWTTRLV 376
                          +        + D    +    E SP +V+  +L D         +
Sbjct: 537 -------------CMVGKVKDALRFFDEMMRS----EISPTLVTYNVLIDG--------L 571

Query: 377 CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
           CK     K   T    F       G++ DV     +++  A  G+V     L   +++ G
Sbjct: 572 CK-----KGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLG 626

Query: 437 MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM---LLYSSLLRTLTKC 493
           ++    T   +I   G SK+    ++  +++      + +  L+   ++Y++++    + 
Sbjct: 627 IKPTVRTYHPLIS--GCSKEGIELVEKLYNE------MLQMNLLPDRVVYNAMIHCYAEI 678

Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
                A ++ + M+  GI PD  T++ L+     +G    ++ L + ++   + P A  +
Sbjct: 679 GNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPKADTY 738

Query: 554 KVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEK 601
            +L++ +C            + +  +N +P+A+    L   L +EGR +E   +   C +
Sbjct: 739 DILVKGHCDLKDFSGAYVWYREMVENNFLPNASICNELTAGLEQEGRLQEVQVI---CSE 795

Query: 602 IN 603
           +N
Sbjct: 796 MN 797



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 101/520 (19%), Positives = 203/520 (39%), Gaps = 76/520 (14%)

Query: 68  DPFIVTHALRSAPNADSALSIMEALKS------NPN-FSHNQSTLHALATVLAKSQRNHE 120
           D F+   A+++A    +    ME L S       PN F +N      L   L + +R  +
Sbjct: 175 DTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYN-----VLIGGLCREKRIRD 229

Query: 121 LKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS 180
            + +  ++ +   +   V +  L+  Y   G+L+         ++++   +  ++N ++S
Sbjct: 230 AEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLS 289

Query: 181 VYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR 240
              K  K  EA    +++   G +P+  TY+++ + L+     + A+E++       I+ 
Sbjct: 290 GLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRI 349

Query: 241 TSKQYLILVEGFVGVERFDEAKSLLNEMRDDG---------KFPGRAMRVA--------L 283
            +    IL+ G     + ++A+ +L +  ++G          F     R+         +
Sbjct: 350 NNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTI 409

Query: 284 ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPW 343
           ERM+  G     N      L DK       + D  + D+ E                  W
Sbjct: 410 ERMESFGL--RPNSITFNSLIDK-------FCDMKEMDKAEE-----------------W 443

Query: 344 LDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYT 403
           +  K +A      S E  + L D         +C   R F+  E             G  
Sbjct: 444 V--KKMAEKGVTPSVETYNTLIDG-----YGKLCTFDRCFQILEQMEEI--------GVK 488

Query: 404 HDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI-RLIIDFYGISKKADAALK 462
            +V +   ++  L + G +   + ++  +   G+ LP + +  ++ID   +  K   AL+
Sbjct: 489 PNVVSYGSLINCLCKDGKILEAEIVLRDMICRGV-LPNAQVYNMLIDGSCMVGKVKDALR 547

Query: 463 AFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
            F  D  +   IS    ++ Y+ L+  L K  +  +A + L ++  SG  PDV T++ L+
Sbjct: 548 FF--DEMMRSEIS--PTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLI 603

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
             +A  G+      L+  ++  G++P    +  LI    K
Sbjct: 604 SGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSK 643



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 93/231 (40%), Gaps = 11/231 (4%)

Query: 86  LSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQ 145
           L  ME +   PN      +  +L   L K  +  E + ++ D+     L  +  +  L+ 
Sbjct: 479 LEQMEEIGVKPNVV----SYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLID 534

Query: 146 WYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP 205
                G ++  L  ++E  +     +  +YN+++    K GK  EA +   Q+   G  P
Sbjct: 535 GSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSP 594

Query: 206 NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL 265
           +  TY  +I    N G +   L ++  +  + IK T + Y  L+ G    E  +  + L 
Sbjct: 595 DVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISG-CSKEGIELVEKLY 653

Query: 266 NEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREML-----PDKRIKN 310
           NEM      P R +  A+     E+G  Q A    + ML     PDK   N
Sbjct: 654 NEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYN 704



 Score = 39.3 bits (90), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 30/152 (19%), Positives = 69/152 (45%)

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L  +I +S F   +  +   +Q      +L++ +   +  R+R    +   YN+++    
Sbjct: 163 LFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLC 222

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           +  +  +A + F ++ +   + +  TY  +I+    +G+LD+A ++   +    +     
Sbjct: 223 REKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNII 282

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            +  L+ G   + +  EA+SLL EM  +G  P
Sbjct: 283 TFNSLLSGLCKMRKMKEARSLLKEMEVNGFMP 314


>gi|326503836|dbj|BAK02704.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 399

 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 93/409 (22%), Positives = 162/409 (39%), Gaps = 50/409 (12%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L++ Y T+G L       +E R+     S   YN  +    K     +AVE ++++  E 
Sbjct: 20  LLRAYCTAGSLHRAEGVISEMREHGIPPSATVYNAYLDGLLKARCAEKAVEVYQRMKRER 79

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
              N+ TYT+MI       +  SA++VF  +  +  K     Y  LV  F      ++A+
Sbjct: 80  CRTNTETYTLMINVYGKSKQPMSAMKVFKEMQSIGCKANICTYTALVNAFAREGLCEKAE 139

Query: 263 SLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREML-----PDKRIKNVRYYED 316
            +  EM+  G  P   A    +E     GF Q A+E    M      PD+   N+     
Sbjct: 140 EVFEEMQQAGHEPDVYAYNALMEAYSRAGFPQAASEIFSLMQHMGCEPDRASYNILVDAY 199

Query: 317 GSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLV 376
           G      E +             +   L  + +A T+      ++ L A A+     R  
Sbjct: 200 GRAGLHREAE------------AVFESLKRQGMAPTM---KSHMLLLAAHARSGNVARCE 244

Query: 377 CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
             + +  KS               G   D  AL  ML    R G ++ ++RL+A +   G
Sbjct: 245 EVMAQLHKS---------------GLAPDTIALNAMLNAYGRAGRLDDMERLLAAMERRG 289

Query: 437 MRLPFSTIRLIIDFYGIS---KKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKC 493
            R    T  + ++ YG +   ++ +AA  +  + R L   +      + ++S +    + 
Sbjct: 290 TR-DVGTYNVAVNAYGRAGYLERMEAAFASL-ERRGLAADV------VTWTSRMGAYARK 341

Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           K     + + EEM+ +G  PD  T   L+   A   DE+ V+++ ++VR
Sbjct: 342 KEYRRCLEIFEEMVDAGCYPDAGTAKVLV---AACSDERQVEQVTAIVR 387



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 100/219 (45%), Gaps = 20/219 (9%)

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALK 462
           T D YAL  +L      G +   + +I+++R  G+    +     +D    ++ A+ A++
Sbjct: 13  TEDTYAL--LLRAYCTAGSLHRAEGVISEMREHGIPPSATVYNAYLDGLLKARCAEKAVE 70

Query: 463 AFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL 521
            +    R  C   ++      Y+ ++    K K+   A+ V +EM   G   ++ T++ L
Sbjct: 71  VYQRMKRERCRTNTE-----TYTLMINVYGKSKQPMSAMKVFKEMQSIGCKANICTYTAL 125

Query: 522 MYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNL 569
           +  FA +G  +  +++F  ++Q G EPD Y +  L++AY +             + +   
Sbjct: 126 VNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGFPQAASEIFSLMQHMGC 185

Query: 570 MPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
            PD A+  +L  +  + G  +EA AV E  ++    P++
Sbjct: 186 EPDRASYNILVDAYGRAGLHREAEAVFESLKRQGMAPTM 224



 Score = 42.0 bits (97), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 65/337 (19%), Positives = 132/337 (39%), Gaps = 39/337 (11%)

Query: 229 VFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQE 288
           +++AL   R   T   Y +L+  +        A+ +++EMR+ G  P   +         
Sbjct: 1   MYAALLEARCVPTEDTYALLLRAYCTAGSLHRAEGVISEMREHGIPPSATVY-------- 52

Query: 289 MGFIQGANEFLREMLPDKRI-KNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPK 347
                  N +L  +L  +   K V  Y+    +    N +  + +   YG   +P    K
Sbjct: 53  -------NAYLDGLLKARCAEKAVEVYQRMKRERCRTNTETYTLMINVYGKSKQPMSAMK 105

Query: 348 ALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY 407
                      E+ S+   A     T LV    R     E A   F  +  Q G+  DVY
Sbjct: 106 VF--------KEMQSIGCKANICTYTALVNAFAREGLC-EKAEEVFEEMQ-QAGHEPDVY 155

Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY---GISKKADAALKAF 464
           A   ++   +R G  +    + + ++  G     ++  +++D Y   G+ ++A+A  ++ 
Sbjct: 156 AYNALMEAYSRAGFPQAASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHREAEAVFESL 215

Query: 465 HDDRTLCGPISKFKLMLLYS-SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
              R    P  K  ++LL + +    + +C+       V+ ++  SG+ PD    + ++ 
Sbjct: 216 --KRQGMAPTMKSHMLLLAAHARSGNVARCE------EVMAQLHKSGLAPDTIALNAMLN 267

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
            +   G    +++L + + + G   D   + V + AY
Sbjct: 268 AYGRAGRLDDMERLLAAMERRGTR-DVGTYNVAVNAY 303


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 99/235 (42%), Gaps = 8/235 (3%)

Query: 48  LAVRSNSSNSLSSLLNDRL--LDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSH 100
           L  R +   +LS L + R    DP  VT+     A   A   D A  +++ ++       
Sbjct: 167 LCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREG-GLKP 225

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T +++   + K+ R  + + +  ++         V++  L+  Y   G     LS +
Sbjct: 226 NLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVF 285

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            E  ++  +    ++  ++ V  K G    AV   R++ + G   N  T+T +I+     
Sbjct: 286 AEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKK 345

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           G LD AL     +   RI+ +   Y  L+ G+  V R DEA+ L+ EM   G  P
Sbjct: 346 GFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKP 400



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 20/222 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA--D 458
           G   DV     ++ ++ + G++E    L+ ++R  G+++   T   +ID  G  KK   D
Sbjct: 292 GIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALID--GFCKKGFLD 349

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
            AL A  + R      S    ++ Y++L+       R  +A  ++ EM   G+ PDV T+
Sbjct: 350 DALLAVREMRQCRIQPS----VVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTY 405

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSN 566
           S ++  +   GD     +L   + +NGV PDA  +  LI+  C            K + +
Sbjct: 406 STILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMIS 465

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
             L PD  T   L     KEG  + A ++ +   K   +P +
Sbjct: 466 LGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDV 507



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 10/154 (6%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           ++    R G V+  +RL+  +R  G++    T   +++  GI K          D R + 
Sbjct: 198 LVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVN--GICKAGR-----MEDARKVF 250

Query: 472 GPISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
             + K  L    + Y++L+    K     +A++V  EM   GI+PDV TF+ L++     
Sbjct: 251 DEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKA 310

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           G+ +    L   +R+ G++ +   F  LI  +CK
Sbjct: 311 GNLERAVGLVREMRERGLQMNEITFTALIDGFCK 344



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/212 (20%), Positives = 86/212 (40%), Gaps = 6/212 (2%)

Query: 69  PFIVT-----HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT 123
           P +VT     H +  A N + A+ ++  ++       N+ T  AL     K     +   
Sbjct: 295 PDVVTFTSLIHVMCKAGNLERAVGLVREMRER-GLQMNEITFTALIDGFCKKGFLDDALL 353

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
            + ++   +     V +  L+  Y   G ++       E   +       +Y+ ++S Y 
Sbjct: 354 AVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYC 413

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           K G    A +  +Q+++ G +P++ TY+ +I  L    +L  A  +F  +  + ++    
Sbjct: 414 KNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEV 473

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            Y  L++G       + A SL +EM   G  P
Sbjct: 474 TYTSLIDGHCKEGNVERALSLHDEMVKAGVLP 505



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 12/125 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+R L       +A++VL +M  +G  P+  T++ L+  F   G+    ++L  M+R
Sbjct: 160 YNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMR 219

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
           + G++P+   F  ++   CK             +    L PD  +   L     K G   
Sbjct: 220 EGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSH 279

Query: 591 EAAAV 595
           EA +V
Sbjct: 280 EALSV 284



 Score = 43.5 bits (101), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 45/102 (44%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YNI++      G   EA+   R +   G  PN+ TY  ++      G++D A  +   +
Sbjct: 159 TYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMM 218

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               +K     +  +V G     R ++A+ + +EM  +G  P
Sbjct: 219 REGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAP 260



 Score = 42.4 bits (98), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 89/227 (39%), Gaps = 23/227 (10%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           GY   V A   +L  L+    +    R    + SDG+     T  +++           A
Sbjct: 118 GYAPSVLAYNAVLLALS-DASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEA 176

Query: 461 LKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           L    D R   C P +     + Y++L+    +      A  +++ M   G+ P++ TF+
Sbjct: 177 LSVLRDMRGAGCDPNA-----VTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFN 231

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNS 567
            ++      G  +  +K+F  + + G+ PD   +  L+  YCK             ++  
Sbjct: 232 SVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRK 291

Query: 568 NLMPDAATKELLKKSLWKEGRRKEAAAV----EERCEKINDVPSLAL 610
            +MPD  T   L   + K G  + A  +     ER  ++N++   AL
Sbjct: 292 GIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTAL 338



 Score = 42.4 bits (98), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 42/82 (51%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           + YSSL+R L + KR  DA  + + MI  G+ PD  T++ L+     +G+ +    L   
Sbjct: 438 ITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDE 497

Query: 541 VRQNGVEPDAYMFKVLIQAYCK 562
           + + GV PD   + VLI    K
Sbjct: 498 MVKAGVLPDVVTYSVLINGLSK 519


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 97/224 (43%), Gaps = 22/224 (9%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           Q G   D +    +++ L R   V+   RL  K++  G+   F T   +++ + +  + D
Sbjct: 224 QRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVD 283

Query: 459 AA---LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
            A   L+ F  D    G +   +    YS L+R L + KR  D   +  +MI   + PDV
Sbjct: 284 EAFSLLRLFEKD----GYVLDVRG---YSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDV 336

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------ 563
             ++ +M   A  G  +   +L + + ++GV PD   + VLI+ +C              
Sbjct: 337 YLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLE 396

Query: 564 LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
           +S  +  P+  T  +L   + + G  ++A  +    EK+   PS
Sbjct: 397 ISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPS 440



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 89/211 (42%), Gaps = 3/211 (1%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
            L P IVT  +++ PN            +   F   +S    L T L  +Q   EL    
Sbjct: 56  FLSPKIVTSIIQNPPNPQLGFRFFIWASNFKRFRAWESC--DLITDLLINQNGLELYCQT 113

Query: 126 GDISSSKFLNVSVN-FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK 184
            +   +  + V  + F  L++ Y   G  +  + T+   R         +YN+++ V  +
Sbjct: 114 LEALKNGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQ 173

Query: 185 TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQ 244
                 A+  + +++    +PN  T++++I+ L   G +  AL +F  +    I   +  
Sbjct: 174 KNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFT 233

Query: 245 YLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           Y +++ G    +R D+A  L ++M+D G  P
Sbjct: 234 YCVVISGLCRSKRVDDAYRLFDKMKDSGVGP 264



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 109/259 (42%), Gaps = 29/259 (11%)

Query: 372 TTRLVCKVLRHFKSPETAWHFFCWVA----YQPGYTHDVYALEKMLTILARHGHVELVDR 427
           + ++V  ++++  +P+  + FF W +    ++   + D+     +  +L     +EL  +
Sbjct: 58  SPKIVTSIIQNPPNPQLGFRFFIWASNFKRFRAWESCDL-----ITDLLINQNGLELYCQ 112

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFKLMLLYSSL 486
            +  L++ G+++      ++I  Y      D A++ F   R   C P      +  Y+ +
Sbjct: 113 TLEALKNGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRDFDCTPD-----VYTYNMI 167

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           L  L +      A+ V   M+    +P+V TFS L+      G+ K    LF  + Q G+
Sbjct: 168 LDVLIQKNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGI 227

Query: 547 EPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAA 594
            PDA+ + V+I   C+             + +S + PD  T   L        R  EA +
Sbjct: 228 LPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFS 287

Query: 595 VEERCEKINDVPSLALRGH 613
           +    EK  D   L +RG+
Sbjct: 288 LLRLFEK--DGYVLDVRGY 304



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 103/519 (19%), Positives = 180/519 (34%), Gaps = 109/519 (21%)

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
            F  L+     SG+++  L  ++E  QR  L    +Y +V+S   ++ +  +A   F ++
Sbjct: 198 TFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKM 257

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEV---------------FSAL--PLMRIKRT 241
            D G  P+  T   ++     L ++D A  +               +S L   L R KR 
Sbjct: 258 KDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRY 317

Query: 242 SKQ------------------YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVA 282
                                Y I+++G     +  +A  LLNEM + G  P      V 
Sbjct: 318 EDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVL 377

Query: 283 LERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKP 342
           ++   +MG +  A     E+       NV+ Y                 + I+   +   
Sbjct: 378 IKGFCDMGLLSEARSLQLEISRHDCFPNVKTYS----------------ILISGMCRNGL 421

Query: 343 WLDPKALANTLDEWS--PEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWH--FFCWVAY 398
             D + + N +++    P  V+  +    +  T  + K    F   E   +   F  ++ 
Sbjct: 422 TRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKMEIGRNPSLFLRLSQ 481

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
            P +  D  +L+KM+  L   G +    R++ +L   G            D  GI     
Sbjct: 482 GPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSG------------DAPGIYT--- 526

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
                                   Y+ L+    K      A  +  EM F G+ PD  T+
Sbjct: 527 ------------------------YNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTY 562

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC-------------KYLS 565
             L+        E+   K+F  + +NG  PDA +++ ++   C             KYL 
Sbjct: 563 GTLINGLLRFQREEDAYKVFDQMEKNGCTPDAAVYRTMMTWMCRRMELPRAFSLWLKYLR 622

Query: 566 NSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND 604
           N     D A K  ++    K+   K    + E   K+ND
Sbjct: 623 NIRSQEDEAIKA-IEGYFEKQEVEKAVRGLLEMDFKLND 660



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/234 (20%), Positives = 99/234 (42%), Gaps = 4/234 (1%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+   L  + N   AL + + + +      +  T   + + L +S+R  +   L   +  
Sbjct: 201 ILIDGLCKSGNVKDALHLFDEM-TQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKD 259

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           S      V    L+  +     ++   S    + +   +L    Y+ ++    +  K +E
Sbjct: 260 SGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFR-AKRYE 318

Query: 191 AVET-FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV 249
            V+  +R++I++   P+   YT+M++ L   GK+  ALE+ + +    +   +  Y +L+
Sbjct: 319 DVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLI 378

Query: 250 EGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREM 302
           +GF  +    EA+SL  E+     FP  +   + +  M   G  + A E   EM
Sbjct: 379 KGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEM 432



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 57/120 (47%)

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
           L L L+ +    +   L +  +++I++    K+G   +A+  F ++   G +P++ TY V
Sbjct: 177 LLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCV 236

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +I  L    ++D A  +F  +    +         L+ GF  ++R DEA SLL     DG
Sbjct: 237 VISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDG 296


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 87/439 (19%), Positives = 147/439 (33%), Gaps = 127/439 (28%)

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
           +E   + +++   P+  TYT++IE       +  A+++   +     K     Y +LV G
Sbjct: 1   MEVLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNG 60

Query: 252 FVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNV 311
                R DEA   LN M   G  P                +   N  LR M    R    
Sbjct: 61  MCKEGRLDEAIKFLNSMPSYGSQPN---------------VITHNIILRSMCSTGR---- 101

Query: 312 RYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTL--DEWSPEVVSLLADAKF 369
                                          W+D + L   +     SP VV+      F
Sbjct: 102 -------------------------------WMDAEKLLTEMVRKGCSPSVVTFNILINF 130

Query: 370 VWTTRLVCKVL-------RHFKSPETA-----WHFFC------------WVAYQPGYTHD 405
           +    L+ + +        H  +P +       H FC             +    G   D
Sbjct: 131 LCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPD 190

Query: 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465
           +     MLT L + G V+    L+ +L S G                             
Sbjct: 191 IVTYNTMLTALCKDGKVDAAVELLNQLSSKG----------------------------- 221

Query: 466 DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF 525
                C P+     ++ Y++++  L+K  +   A+ +L EM   G+ PDV T+S L+   
Sbjct: 222 -----CSPV-----LITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGL 271

Query: 526 ALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDA 573
           + +G  +   K F  V   GV+P+A+ +  ++   CK            Y+ +    P  
Sbjct: 272 SREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTE 331

Query: 574 ATKELLKKSLWKEGRRKEA 592
            +  +L + +  EG  KEA
Sbjct: 332 VSYTILIEGIANEGLAKEA 350



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 47  RLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLH 106
           ++     + NSLS        +P +  H        D A+  +E + S   +  +  T +
Sbjct: 146 KMPTHGCTPNSLS-------YNPLL--HGFCKEKKMDRAIQYLEIMVSRGCYP-DIVTYN 195

Query: 107 ALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR 166
            + T L K  +      L+  +SS     V + +  ++   S  G  +  +   +E R +
Sbjct: 196 TMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGK 255

Query: 167 AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
                  +Y+ +++  ++ GK  EA++ F  V   G  PN+ TY  ++  L    + D A
Sbjct: 256 GLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRA 315

Query: 227 LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           ++  + +     K T   Y IL+EG        EA  LLNE+   G
Sbjct: 316 IDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNELCSRG 361



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 50/102 (49%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SYN ++  + K  K   A++    ++  G  P+  TY  M+  L   GK+D+A+E+ + L
Sbjct: 158 SYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQL 217

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                      Y  +++G   V + D+A  LL+EMR  G  P
Sbjct: 218 SSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKP 259



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 74/173 (42%), Gaps = 1/173 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  ++      G ++  +   N+   +       +YN V+   +K GK  +AVE   +
Sbjct: 192 VTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHE 251

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +  +G  P+  TY+ +I  L   GK++ A++ F  +    +K  +  Y  ++ G    ++
Sbjct: 252 MRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQ 311

Query: 258 FDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIK 309
            D A   L  M   G  P   +  + +E +   G  + A E L E+     +K
Sbjct: 312 TDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNELCSRGVVK 364



 Score = 46.6 bits (109), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 58/138 (42%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+      G L+  +   N         +  ++NI++     TG+  +A +   +
Sbjct: 52  VTYNVLVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTE 111

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++ +G  P+  T+ ++I  L   G L  A+++   +P       S  Y  L+ GF   ++
Sbjct: 112 MVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKK 171

Query: 258 FDEAKSLLNEMRDDGKFP 275
            D A   L  M   G +P
Sbjct: 172 MDRAIQYLEIMVSRGCYP 189



 Score = 40.0 bits (92), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 14/129 (10%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ ++ +LR++    R  DA  +L EM+  G  P V TF+ L+     +G       +  
Sbjct: 86  VITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILE 145

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK---------YLS---NSNLMPDAATKELLKKSLWKEG 587
            +  +G  P++  +  L+  +CK         YL    +    PD  T   +  +L K+G
Sbjct: 146 KMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDG 205

Query: 588 RRKEAAAVE 596
             K  AAVE
Sbjct: 206 --KVDAAVE 212


>gi|30698782|ref|NP_177277.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75151609|sp|Q8GZA6.1|PP113_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g71210
 gi|26449321|dbj|BAC41788.1| unknown protein [Arabidopsis thaliana]
 gi|29029058|gb|AAO64908.1| At1g71210 [Arabidopsis thaliana]
 gi|332197052|gb|AEE35173.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 879

 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 122/282 (43%), Gaps = 28/282 (9%)

Query: 41  QLIDSIRLAVRSNSSNSLS-------SLLNDRLLDPFIVTHALRSAPNADSALSIMEALK 93
           QLID I   +R+ S++          S L  RL + F++     +  +    L   +   
Sbjct: 78  QLIDRIFDILRAPSNDGDDRAFYLHLSNLRLRLTEKFVLDVLSHTRYDILCCLKFFDWAA 137

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN----------L 143
             P F H ++T HA+  +L    R  +L TL+ D     FL+ SV F +          L
Sbjct: 138 RQPGFHHTRATFHAIFKIL----RGAKLVTLMID-----FLDRSVGFESCRHSLRLCDAL 188

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
           +  Y+ +G  ++ L  +   R R   L +  Y+++++   +  K F++ +     I    
Sbjct: 189 VVGYAVAGRTDIALQHFGNMRFRGLDLDSFGYHVLLNALVEE-KCFDSFDVIFDQISVRG 247

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
              + T++++++     GKLD A +   AL             ILV+      +F EA  
Sbjct: 248 FVCAVTHSILVKKFCKQGKLDEAEDYLRALLPNDPAGCGSGLGILVDALCSKRKFQEATK 307

Query: 264 LLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREMLP 304
           LL+E++  G     RA  + +  + + GF+    +FL+++ P
Sbjct: 308 LLDEIKLVGTVNMDRAYNIWIRALIKAGFLNNPADFLQKISP 349



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 2/109 (1%)

Query: 166 RAKLLSTESYNIVM-SVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
           R  +  T + NI+M   Y K  K  +A+  F  + ++G     R Y VMI  L    KLD
Sbjct: 631 RDGITPTVASNILMLQSYLKNEKIADALHFFHDLREQGK-TKKRLYQVMIVGLCKANKLD 689

Query: 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
            A+     +    ++ + + Y + ++     E++DEA  L+NE R  G+
Sbjct: 690 DAMHFLEEMKGEGLQPSIECYEVNIQKLCNEEKYDEAVGLVNEFRKSGR 738


>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Vitis vinifera]
          Length = 708

 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 92/525 (17%), Positives = 204/525 (38%), Gaps = 43/525 (8%)

Query: 91  ALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS 150
           AL  N N       +  +    A++ +  E   ++ ++ +   +  +     ++      
Sbjct: 143 ALIGNKNLERANEVMQCMVMNFAENGKLKEAVNMVVEMQNQGLVPSTQTLNCVLDVAVGM 202

Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
           G +E+  + + E  QR       S+ +++      G+  EA      +++ G I ++ T 
Sbjct: 203 GLVEIAENMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAERWLNAMVERGFIVDNATC 262

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
           T++I+     G ++  +  F  +  M +      +  L+ G        +A  LL EM  
Sbjct: 263 TLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVR 322

Query: 271 DGKFPGRAMRVAL-ERMQEMGFIQGANE-FLREMLPDKRIKNVRYYEDGSDDDEDENDDN 328
            G  P       L + + + G+ + A   FL+ +  D    NV  Y    +    E+  N
Sbjct: 323 RGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLN 382

Query: 329 NSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPET 388
            + + ++        +  + L    + ++      L D          CKV    ++ E 
Sbjct: 383 RAEMLLSR-------MQEQGLVPNTNTYTT-----LIDGH--------CKVGNFVRAYEL 422

Query: 389 AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII 448
                  +  + G++ ++Y    ++  L + G ++   RL+ K+   G++    T  +++
Sbjct: 423 MD-----LMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILM 477

Query: 449 DFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF 508
             +   ++AD        ++ L   +     +  Y++L+ T  + K+  ++  + EE + 
Sbjct: 478 SVH--CRQADTNRSLVFFNKML--KVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVS 533

Query: 509 SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------ 562
            G++P  +T++ ++  +   G+  +  KLF  +  +G  PD+  +  LI   CK      
Sbjct: 534 LGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDD 593

Query: 563 ------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEK 601
                  + +  L P   T+  L     K+     A  V +R EK
Sbjct: 594 ARNLYDAMMDKGLSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEK 638



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/234 (21%), Positives = 91/234 (38%), Gaps = 17/234 (7%)

Query: 92  LKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG 151
           L     FS N  T +A+   L K     E   L+  +S        V +  LM  +    
Sbjct: 425 LMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQA 484

Query: 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT 211
           D    L  +N+  +        SY  ++S + +  +  E+   F + +  G IP  +TYT
Sbjct: 485 DTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTYT 544

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
            MI      G    A+++F  +        S  Y  L+ G     + D+A++L + M D 
Sbjct: 545 SMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDK 604

Query: 272 GKFPGRAMRV-----------------ALERMQEMGFIQGANEFLREMLPDKRI 308
           G  P    R+                  L+R+++  +I+  N  +R++  + ++
Sbjct: 605 GLSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIRTVNTLVRKLCSEGKL 658


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 90/213 (42%), Gaps = 36/213 (16%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V++  ++  Y   G+L+ VL    E + +    +  +YN ++ +  K+GK  +A    R+
Sbjct: 11  VSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLRE 70

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI--------------KRTSK 243
           +I++G +P++  YT +I+    LG + +A ++F  +   RI               R  K
Sbjct: 71  MINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGK 130

Query: 244 Q---------------------YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA 282
                                 Y  L++G+      ++A SL N+M   G  P      A
Sbjct: 131 MMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTA 190

Query: 283 L-ERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
           L + + ++G +  ANE L EM       N+  Y
Sbjct: 191 LADGLCKLGQVDTANELLHEMCGKGLQLNICTY 223



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y  ++  Y K+G+  +A     Q++  G  PN  TYT + + L  LG++D+A E+   +
Sbjct: 152 TYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEM 211

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
               ++     Y  LV G        +A  L+ EM   G +P        ++   + G +
Sbjct: 212 CGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEM 271

Query: 293 QGANEFLREML 303
             A+E LREML
Sbjct: 272 VKAHELLREML 282



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 54/265 (20%), Positives = 104/265 (39%), Gaps = 23/265 (8%)

Query: 369 FVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRL 428
           F+  T ++C + R  K  E    F     +  G   D      ++    + G +E    L
Sbjct: 115 FIAYTAVICGLCRCGKMMEADKVF--NKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSL 172

Query: 429 IAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLR 488
             ++   G+     T   + D      + D A +  H+   +CG   +  +   Y+SL+ 
Sbjct: 173 HNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHE---MCGKGLQLNI-CTYNSLVN 228

Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548
            L K      A+ ++EEM  +G+ PD  TF+ LM  +   G+     +L   +   G++P
Sbjct: 229 GLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQP 288

Query: 549 DAYMFKVLIQAYC------------KYLSNSNLMPDAAT-KELLKKSLWKEGRRKEAAAV 595
               F VL+  +C             ++    +MP+  T   L+K+   +   R      
Sbjct: 289 TVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIY 348

Query: 596 EERCEKI----NDVPSLALRGHIWA 616
           +  C +     ++  ++ ++GH  A
Sbjct: 349 KGMCARGVMPDSNTYNILIKGHCKA 373



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/236 (19%), Positives = 94/236 (39%), Gaps = 6/236 (2%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNP 96
           LID    +     + SL + +    L P +VT+      L      D+A  ++  +    
Sbjct: 156 LIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEM-CGK 214

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
               N  T ++L   L KS    +   L+ ++  +     ++ F  LM  Y  +G++   
Sbjct: 215 GLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKA 274

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
                E   R    +  ++N++M+ +  +G   +       ++++G +PN+ TY  +++ 
Sbjct: 275 HELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQ 334

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
                 +    E++  +    +   S  Y IL++G        EA  L  EM + G
Sbjct: 335 YCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKG 390



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 104/259 (40%), Gaps = 31/259 (11%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   DV +   ++      G ++ V +LI +++  G++    T   II     S K D A
Sbjct: 5   GDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDA 64

Query: 461 LKAFHDDRTLCGPISKFKL--MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
                 +R L   I++  +   ++Y++L+    K      A  + +EM    IVPD   +
Sbjct: 65  ------ERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAY 118

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSN 566
           + ++      G      K+F+ +   GVEPD   +  LI  YCK             +  
Sbjct: 119 TAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQ 178

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEAAA-VEERCEK---IND------VPSLALRGHI-W 615
           S L P+  T   L   L K G+   A   + E C K   +N       V  L   G+I  
Sbjct: 179 SGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQ 238

Query: 616 AVSSADLTRVHSIYRNSIT 634
           AV   +   V  +Y ++IT
Sbjct: 239 AVKLMEEMEVAGMYPDTIT 257



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 12/113 (10%)

Query: 506 MIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY-- 563
           M F G  PDV ++S ++  + L G+ + V KL   ++  G++P+ Y +  +I   CK   
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60

Query: 564 ----------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
                     + N  ++PD      L     K G  + A  + +  EK   VP
Sbjct: 61  VDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVP 113


>gi|357498925|ref|XP_003619751.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494766|gb|AES75969.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 562

 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 49/83 (59%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +++Y++++ ++ K K D DA ++  EM+   I PDV T++ L+  F + G  K    LF+
Sbjct: 241 LVMYNTIIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNTYNALINGFCIVGKLKDAIGLFN 300

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK 562
            +    + PD Y F +L+ A+CK
Sbjct: 301 KMTSENINPDVYTFNILVDAFCK 323



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 50/91 (54%)

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
           G+  + +   RQ+ D+G  PN  TYT++I+ L   G+L+ A  +F  L +     T   Y
Sbjct: 446 GQQPDIITLTRQLKDQGIRPNMFTYTILIDGLCKGGRLEDARNIFEDLLVKGYNITVNTY 505

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
            +++ GF     FDEA +LL++M+D+   P 
Sbjct: 506 TVMIHGFCNKGLFDEAMTLLSKMKDNCCIPN 536



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 52/253 (20%), Positives = 100/253 (39%), Gaps = 24/253 (9%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
           N + +  T + L     K  R  E K  +  +         V + +LM  Y    ++   
Sbjct: 306 NINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDVVTYNSLMDRYCLVNEVNKA 365

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
            S +N    R    +  SY+I+++ + K     +A++ F+++  +   PN  TY+ +I+ 
Sbjct: 366 KSIFNTMSHRGVTANVRSYSIMINRFCKIKMVDQAMKLFKEMHHKQIFPNVITYSSLIDG 425

Query: 217 LVNLGKLDSALEVFSAL-------PLMRIKRTSKQ---------YLILVEGFVGVERFDE 260
           L   G++  ALE+   +        ++ + R  K          Y IL++G     R ++
Sbjct: 426 LCKSGRISYALELNDEMHDRGQQPDIITLTRQLKDQGIRPNMFTYTILIDGLCKGGRLED 485

Query: 261 AKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE---- 315
           A+++  ++   G         V +      G    A   L +M  +  I N   YE    
Sbjct: 486 ARNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEAMTLLSKMKDNCCIPNAVTYEIIIR 545

Query: 316 ---DGSDDDEDEN 325
              D  ++D+ EN
Sbjct: 546 SLFDNDENDKAEN 558



 Score = 47.0 bits (110), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 31/147 (21%), Positives = 65/147 (44%), Gaps = 1/147 (0%)

Query: 131 SKFLNVSVNFMN-LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF 189
           SK +   VN  N L+  +   G L+  +  +N+           ++NI++  + K G+  
Sbjct: 269 SKRIFPDVNTYNALINGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVK 328

Query: 190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV 249
           EA      ++ +G  P+  TY  +++    + +++ A  +F+ +    +    + Y I++
Sbjct: 329 EAKNGLAMMMKQGIKPDVVTYNSLMDRYCLVNEVNKAKSIFNTMSHRGVTANVRSYSIMI 388

Query: 250 EGFVGVERFDEAKSLLNEMRDDGKFPG 276
             F  ++  D+A  L  EM     FP 
Sbjct: 389 NRFCKIKMVDQAMKLFKEMHHKQIFPN 415



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 40/79 (50%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++L+       +  DAI +  +M    I PDV TF+ L+  F  +G  K  +   +M+ 
Sbjct: 279 YNALINGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMM 338

Query: 543 QNGVEPDAYMFKVLIQAYC 561
           + G++PD   +  L+  YC
Sbjct: 339 KQGIKPDVVTYNSLMDRYC 357



 Score = 42.7 bits (99), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 46/101 (45%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YN ++    K   + +A + + +++ +   P+  TY  +I     +GKL  A+ +F+ + 
Sbjct: 244 YNTIIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNTYNALINGFCIVGKLKDAIGLFNKMT 303

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              I      + ILV+ F    R  EAK+ L  M   G  P
Sbjct: 304 SENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKP 344



 Score = 42.4 bits (98), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 77/195 (39%), Gaps = 15/195 (7%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           DVY    ++    + G V+     +A +   G++    T   ++D Y +  + + A   F
Sbjct: 310 DVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDVVTYNSLMDRYCLVNEVNKAKSIF 369

Query: 465 H--DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
           +    R +   +        YS ++    K K    A+ + +EM    I P+V T+S L+
Sbjct: 370 NTMSHRGVTANVRS------YSIMINRFCKIKMVDQAMKLFKEMHHKQIFPNVITYSSLI 423

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKS 582
                 G      +L   +   G +PD       I    + L +  + P+  T  +L   
Sbjct: 424 DGLCKSGRISYALELNDEMHDRGQQPD-------IITLTRQLKDQGIRPNMFTYTILIDG 476

Query: 583 LWKEGRRKEAAAVEE 597
           L K GR ++A  + E
Sbjct: 477 LCKGGRLEDARNIFE 491


>gi|307103654|gb|EFN51912.1| hypothetical protein CHLNCDRAFT_59068 [Chlorella variabilis]
          Length = 1025

 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 18/181 (9%)

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFK 478
           G  +   R+  ++ + G +   +T   +I  YG + + D AL+ F D  R  C      +
Sbjct: 314 GQAQEALRIYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGC-----ER 368

Query: 479 LMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF 538
            ++ YSSL+    K  R   A+ +  EM   G  P+V T++ L+   A     +  Q++F
Sbjct: 369 NVITYSSLISACEKAGRWELALELFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMF 428

Query: 539 SMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKE 586
             ++  G +PDA  F  LI AY +             +   N  PD+     +  +LWK 
Sbjct: 429 EQMQHRGCKPDAVTFGGLIAAYDRAGHWRRALTAFEQMKAHNCRPDSVVYNTIVGALWKT 488

Query: 587 G 587
           G
Sbjct: 489 G 489



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 61/138 (44%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+  Y  +G  E  +   +   ++       +YN V+     +G+  EA+  + +
Sbjct: 266 VTYNTLIDVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYER 325

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++  GA P + TYT +I      G+LD AL++F  +     +R    Y  L+       R
Sbjct: 326 MLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSLISACEKAGR 385

Query: 258 FDEAKSLLNEMRDDGKFP 275
           ++ A  L  EM  +G  P
Sbjct: 386 WELALELFREMHTEGCRP 403



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 72/179 (40%), Gaps = 11/179 (6%)

Query: 77  RSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKS---QRNHELKTLIGDISSSKF 133
           R  P A +  +I + L     +  +   L AL   L KS   +R  EL   +  +  S  
Sbjct: 134 RLPPEASAVKAIGQGL-----YYFDSGALAALLKELNKSGHVRRAQELFDWLRGLDDSHD 188

Query: 134 LNVSVNFMNLMQWYSTSG---DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           L    N M      S  G    L   L    E R R    +  +Y+ +M+V  K  +   
Sbjct: 189 LYPLCNTMTYTTMISQCGTQQQLRRALELVAEMRSRGIQCNVHTYSALMNVCIKGNELDL 248

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV 249
           A++ +RQ++ EG  PN  TY  +I+     G  + A+ V  AL    I    + Y  ++
Sbjct: 249 ALDVYRQMLAEGCTPNLVTYNTLIDVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVI 307



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 46/98 (46%)

Query: 136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF 195
            +  +  L+  Y  +G L+  L  + +  +R    +  +Y+ ++S   K G+   A+E F
Sbjct: 334 TATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSLISACEKAGRWELALELF 393

Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           R++  EG  PN  TY  +I       + + A E+F  +
Sbjct: 394 REMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQM 431



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/126 (20%), Positives = 54/126 (42%)

Query: 150 SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRT 209
           SG  +  L  +          +  +Y  ++S Y K G+   A++ F+ ++  G   N  T
Sbjct: 313 SGQAQEALRIYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVIT 372

Query: 210 YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
           Y+ +I      G+ + ALE+F  +     +     Y  L+       ++++A+ +  +M+
Sbjct: 373 YSSLISACEKAGRWELALELFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQMQ 432

Query: 270 DDGKFP 275
             G  P
Sbjct: 433 HRGCKP 438


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 97/231 (41%), Gaps = 19/231 (8%)

Query: 380 LRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
           +R    P+ A  FF W   Q GY HDV++   +L IL + GH     ++   L   G   
Sbjct: 1   MRRSSRPDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSP 60

Query: 440 PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDA 499
              T +++I     + KA  A +A    R L    S    + +++ L+  L K      A
Sbjct: 61  NLVTFKILIRG---NCKAGQATRALEFLRAL-DEFSVAPDVYIFNFLIHGLFKDGNPDQA 116

Query: 500 INVLEEMIFSGIVPDVQTFSGLMYHFALQGD-EKIVQKLFSMVRQNG-VEPDAYMFKVLI 557
           + + E M  S + PD+ T++ ++      G+ EK  + L  M+R+ G   PD   +  LI
Sbjct: 117 VKLFENMESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLI 176

Query: 558 QA-YCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
            A  CK             +  +   PD  T   +  +L   GR  EAA +
Sbjct: 177 NAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEI 227



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 88/205 (42%), Gaps = 26/205 (12%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKL-RSDGMRLP-FSTIRLIIDFYGISKKADA--A 460
           D++    +++ L + G++E    L+ ++ R  G   P   T   +I+  GI K  D   A
Sbjct: 131 DIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLIN-AGICKDGDVEEA 189

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           L+   D   L GP      ++ Y+S++  L    R  +A  +L+ M  S   PD+ TF+ 
Sbjct: 190 LEIL-DGMKLAGPAPD---VITYNSIIHALCVAGRVVEAAEILKTMSCS---PDLVTFNT 242

Query: 521 LMYHFALQGD-EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNS 567
           L+  F   G   + ++ L  M R+N + PD   + +L+   C+             +   
Sbjct: 243 LLDGFCKAGMLPRALEVLEEMCREN-ILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQ 301

Query: 568 NLMPDAATKELLKKSLWKEGRRKEA 592
             +PD      L   L K G  +EA
Sbjct: 302 GYIPDVIAYTSLVDGLCKSGEIEEA 326



 Score = 45.8 bits (107), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 74/175 (42%), Gaps = 9/175 (5%)

Query: 107 ALATVLAKSQRNHELKTLIGDISSSKFLN--VSVNFMNLMQWYST-------SGDLELVL 157
           +L   L KS    E   L+ ++S+ + L   VS+N +  +  Y+         G +   +
Sbjct: 312 SLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAV 371

Query: 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217
           S  ++   R  +    +YN ++    K  +  EA +   ++   G  PN  T   ++  L
Sbjct: 372 SLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGL 431

Query: 218 VNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
             +G++D A  +   +   R       Y  L++G    +R D+A  +L+ MR  G
Sbjct: 432 CRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQG 486



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 89/207 (42%), Gaps = 19/207 (9%)

Query: 81  NADSALSIMEALK---SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVS 137
           + + AL I++ +K     P+     S +HAL      + R  E   ++  +S S  L   
Sbjct: 185 DVEEALEILDGMKLAGPAPDVITYNSIIHALCV----AGRVVEAAEILKTMSCSPDL--- 237

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F  L+  +  +G L   L    E  +   L    +Y I+++   + G+   A     +
Sbjct: 238 VTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEE 297

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLD---------SALEVFSALPLMRIKRTSKQYLIL 248
           ++ +G IP+   YT +++ L   G+++         SA E+ + +  + +      Y I+
Sbjct: 298 IVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIV 357

Query: 249 VEGFVGVERFDEAKSLLNEMRDDGKFP 275
           + G +      +A SL++++   G  P
Sbjct: 358 LGGLIKDGSISKAVSLISDLVARGYVP 384



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 1/131 (0%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SYN ++ +  K+G  F   + ++ ++  G  PN  T+ ++I      G+   ALE   AL
Sbjct: 29  SYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRALEFLRAL 88

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
               +      +  L+ G       D+A  L   M      P        +  + + G +
Sbjct: 89  DEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISGLCKSGNL 148

Query: 293 QGANEFLREML 303
           + A E L EM+
Sbjct: 149 EKARELLEEMI 159


>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 477

 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 15/137 (10%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +++Y++++  L K KR  DA ++  EMI  GI P+V T++ L+Y F + G+ K    L +
Sbjct: 233 VVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLN 292

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEG 587
            ++   + PD Y F +LI A  K             + + N+ P+  T   L   L K  
Sbjct: 293 EMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNH 352

Query: 588 RRKEAAAVEERCEKIND 604
             + A A+   C+K+ +
Sbjct: 353 HLERAIAL---CKKMKE 366



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 56/130 (43%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  +   G+L+   S  NE + +       ++NI++    K GK  EA+  F ++  + 
Sbjct: 274 LIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKN 333

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             PN  TYT +I+ L     L+ A+ +   +    I+     Y IL++      R + AK
Sbjct: 334 MFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAK 393

Query: 263 SLLNEMRDDG 272
                +   G
Sbjct: 394 QFFQHLLVKG 403



 Score = 47.0 bits (110), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 45/101 (44%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           Y  ++    K  +  +A + + ++I +G  PN  TY  +I     +G L  A  + + + 
Sbjct: 236 YTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMK 295

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           L  I      + IL++      + DEA SL  EM+    FP
Sbjct: 296 LKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFP 336



 Score = 45.4 bits (106), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 31/162 (19%), Positives = 71/162 (43%), Gaps = 1/162 (0%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+      G ++  +S + E + +    +  +Y  ++    K      A+   +++ ++G
Sbjct: 309 LIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQG 368

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  +YT++++ L   G+L++A + F  L +       + Y +++ G      F +  
Sbjct: 369 IQPDVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVM 428

Query: 263 SLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREML 303
            L ++M   G  P     +  +  + E      A +FLREM+
Sbjct: 429 DLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKFLREMI 470



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 65/142 (45%), Gaps = 1/142 (0%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN ++  +   G   EA     ++  +   P+  T+ ++I+ L   GK+D A+ +F  +
Sbjct: 270 TYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEM 329

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFI 292
               +      Y  L++G       + A +L  +M++ G  P   +  + L+ + + G +
Sbjct: 330 KHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRL 389

Query: 293 QGANEFLREMLPDKRIKNVRYY 314
           + A +F + +L      NVR Y
Sbjct: 390 ENAKQFFQHLLVKGYHLNVRTY 411



 Score = 43.1 bits (100), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 45/232 (19%), Positives = 90/232 (38%), Gaps = 2/232 (0%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL 143
           + +S+ +  +SN   + N  TL+ L              ++  +I    +   ++    L
Sbjct: 111 TVISLFKQFQSN-GVTPNLCTLNILINCFCHLAHITFAFSVFANILKRGYHPDAITLNTL 169

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
           ++     G+++  L   ++   +   L   SY  +++   K G+        R++     
Sbjct: 170 IKGLCFCGEIKRALYFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSV 229

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
            P+   YT +I  L    ++  A +++S + +  I      Y  L+ GF  +    EA S
Sbjct: 230 KPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFS 289

Query: 264 LLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
           LLNEM+     P      + ++ + + G I  A     EM       N+  Y
Sbjct: 290 LLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTY 341



 Score = 42.7 bits (99), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 39/192 (20%), Positives = 78/192 (40%), Gaps = 1/192 (0%)

Query: 81  NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNF 140
           N   A S++  +K   N + +  T + L   L K  +  E  +L  ++         V +
Sbjct: 283 NLKEAFSLLNEMKLK-NINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTY 341

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
            +L+     +  LE  ++   + +++       SY I++    K G+   A + F+ ++ 
Sbjct: 342 TSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLV 401

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
           +G   N RTY VMI  L   G     +++ S +        +  +  ++      +  D+
Sbjct: 402 KGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPDAITFKTIICALFEKDENDK 461

Query: 261 AKSLLNEMRDDG 272
           A+  L EM   G
Sbjct: 462 AEKFLREMIARG 473



 Score = 42.4 bits (98), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 86/204 (42%), Gaps = 16/204 (7%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G + +V+    ++      G+++    L+ +++   +     T  ++ID  G   K D A
Sbjct: 263 GISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEA 322

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           +  F + +      + F  ++ Y+SL+  L K      AI + ++M   GI PDV +++ 
Sbjct: 323 ISLFEEMKHK----NMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTI 378

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSN 568
           L+      G  +  ++ F  +   G   +   + V+I   CK             +    
Sbjct: 379 LLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKG 438

Query: 569 LMPDAATKELLKKSLWKEGRRKEA 592
            MPDA T + +  +L+++    +A
Sbjct: 439 CMPDAITFKTIICALFEKDENDKA 462


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 70/164 (42%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L + ++  E + L   +   +     V +  L+     +  +E     + E   +  + +
Sbjct: 54  LCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPT 113

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
             SYN ++  + K      A + F +++    +PN  TYT +I+ L   GK+ +A EV  
Sbjct: 114 EVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLD 173

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            +    +      Y  L++GF  V R DEA  LL +M   G  P
Sbjct: 174 GMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAP 217



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/174 (20%), Positives = 74/174 (42%), Gaps = 4/174 (2%)

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
           NPN      T + L   L K+ R      L  +++   ++   V++  L+  +    DL 
Sbjct: 76  NPNVV----TYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLV 131

Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
                +++  +   + +  +Y  ++   +K+GK   A E    ++ +G  PN  TY+ +I
Sbjct: 132 AAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLI 191

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           +    + ++D A ++   +    I  T   Y IL+      ++ ++A  L   M
Sbjct: 192 DGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGM 245



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 1/171 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+   S SG ++      +   ++    +  +Y+ ++  + K  +  EA +   Q
Sbjct: 150 VTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQ 209

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++ +G  P   TY +++  L    KL+ A ++F  +   R   T   Y  L+      ++
Sbjct: 210 MVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQ 269

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVALE-RMQEMGFIQGANEFLREMLPDKR 307
            D A  L  EM   G  P       L   +   G +  A E + +M   KR
Sbjct: 270 LDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLTKR 320



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 10/87 (11%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG---DEKIVQK- 536
           L Y  ++  L K KR  DA+  +EEM   GI PD       +Y+F L G   +EK+ +  
Sbjct: 10  LTYGPIVERLCKTKRIDDALATVEEMATRGIKPD-----AFIYNFVLSGLCQEEKVEEAR 64

Query: 537 -LFSMVRQNGVEPDAYMFKVLIQAYCK 562
            LF  + +  + P+   +  LI   CK
Sbjct: 65  LLFEKMVKQRINPNVVTYNTLINGLCK 91



 Score = 42.0 bits (97), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 8/114 (7%)

Query: 452 GISKKAD-AALKAFHDD--RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF 508
           G  KK D  A K   D   R+ C P      ++ Y++L+  L+K  +   A  VL+ M+ 
Sbjct: 123 GFCKKKDLVAAKDVFDKMVRSNCVPN-----VVTYTTLIDGLSKSGKVQAAAEVLDGMVK 177

Query: 509 SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            G+ P+V T+S L+  F          KL   +   G+ P    + +L+ + C+
Sbjct: 178 KGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCR 231


>gi|255660968|gb|ACU25653.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 376

 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 65/149 (43%)

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           +  S F+  S+ +  L+  +  +G ++  L       Q+  +L   +Y+ +++   K   
Sbjct: 85  MKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLGAFAYSAMINGLCKEAN 144

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
              AV     +I  G  PN   Y  +I  LV   K + A+ VF  +  M    T   Y  
Sbjct: 145 LDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNT 204

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
           L+ GF   + F EA +L+ E+ D G  PG
Sbjct: 205 LINGFCKNKMFGEAYNLVKELLDKGLDPG 233



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/216 (19%), Positives = 90/216 (41%), Gaps = 18/216 (8%)

Query: 396 VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455
           +A Q G     +A   M+  L +  +++    ++  +   G +        +I+    + 
Sbjct: 119 MAEQKGGVLGAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGAS 178

Query: 456 KADAALKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
           K + A++ F +  T+ C P      ++ Y++L+    K K   +A N+++E++  G+ P 
Sbjct: 179 KFEDAIRVFREMGTMHCSPT-----IITYNTLINGFCKNKMFGEAYNLVKELLDKGLDPG 233

Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY----------- 563
           V T+S LM         +   +L++ V   G +PD  M  +LI   C             
Sbjct: 234 VITYSMLMEGLCFDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMELALSLYF 293

Query: 564 -LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
            ++     P+  +   L +  +K+G  + A  +  R
Sbjct: 294 DMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWAR 329



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 1/135 (0%)

Query: 135 NVSVNFMN-LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE 193
           N SV+  N +M+    +G ++ V+S W   ++   +  + +Y I++  + K G   +++ 
Sbjct: 56  NRSVSSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLH 115

Query: 194 TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
                  +G +  +  Y+ MI  L     LD A+ V + +     K     Y  L+ G V
Sbjct: 116 VLEMAEQKGGVLGAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLV 175

Query: 254 GVERFDEAKSLLNEM 268
           G  +F++A  +  EM
Sbjct: 176 GASKFEDAIRVFREM 190



 Score = 40.4 bits (93), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 51/95 (53%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN +++ + K     EA    ++++D+G  P   TY++++E L    K++ AL++++ +
Sbjct: 201 TYNTLINGFCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMEGLCFDHKVERALQLWNQV 260

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
                K   + + IL+ G   V + + A SL  +M
Sbjct: 261 TSKGFKPDVQMHNILIHGLCSVGKMELALSLYFDM 295


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 119/563 (21%), Positives = 218/563 (38%), Gaps = 55/563 (9%)

Query: 37  LRRAQLIDSIRLAVRSNSSNSLSSLLNDR-LLDPFIVTHA----LRSAPNADSALSIMEA 91
           L RA L    R +  ++  ++L S+L DR LLD  +   A    LR  PN  +   I+  
Sbjct: 107 LHRAALALGPRRSALASVVDTLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLR 166

Query: 92  LKSNPNF-----------SHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNF 140
           L  + +            + N  T + +   L K     E ++L   +     L   V F
Sbjct: 167 LARDRSGRLVRRLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTF 226

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
            +L+  Y   G+L+ V     E R+        +YN +++ + K G+   A   F  +  
Sbjct: 227 NSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKR 286

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
           EG + N  T++  ++     G +  A+++F+ + +  +      Y  L++G     R D+
Sbjct: 287 EGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDD 346

Query: 261 AKSLLNEMRD--------------DGKFPGRAMRVALE--RMQEMGFIQGANEFLREMLP 304
           A  LL+EM                DG    R +  A +  RM E   ++ ANE L   L 
Sbjct: 347 AIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVR-ANELLYTTLI 405

Query: 305 DKRIKNVRYYEDGSDDDEDEN-----DDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPE 359
                N    +      E +N     D +  G  I     +    + K+L   +DE   E
Sbjct: 406 HGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLE 465

Query: 360 VVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH 419
                    ++  T ++    +  K PE             G+  +V     ++  L + 
Sbjct: 466 -------PNYIIYTTMMDACFKSGKVPEAIAML--QKILDSGFQPNVITYCALIDGLCKA 516

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA--DAALKAFHDDRTLCGPISKF 477
           G ++       K+R  G+         ++D  G+ K    + A++ F++       + K 
Sbjct: 517 GSIDEAISHFNKMRDLGLDPNVQAYTALVD--GLCKNGCLNEAVQLFNEMVHKGMSLDK- 573

Query: 478 KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL 537
              ++Y++LL    K     DA  +  +MI SG+  D+  ++  +  F         +++
Sbjct: 574 ---VVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREV 630

Query: 538 FSMVRQNGVEPDAYMFKVLIQAY 560
           FS +  +G+ PD  ++  LI  Y
Sbjct: 631 FSEMIGHGIAPDRAVYNCLISKY 653



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 5/222 (2%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           A S L+ M+     PN+    + + A      KS +  E   ++  I  S F    + + 
Sbjct: 452 AKSLLTKMDESGLEPNYIIYTTMMDACF----KSGKVPEAIAMLQKILDSGFQPNVITYC 507

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            L+     +G ++  +S +N+ R      + ++Y  ++    K G   EAV+ F +++ +
Sbjct: 508 ALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHK 567

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G   +   YT +++  +  G L  A  + + +    ++     Y   + GF  +    EA
Sbjct: 568 GMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEA 627

Query: 262 KSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
           + + +EM   G  P RA+    + + Q++G ++ A     EM
Sbjct: 628 REVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEM 669



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 100/229 (43%), Gaps = 19/229 (8%)

Query: 383 FKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFS 442
           F   ETA+ +F  +  + G   +V      +    + G V    +L A++R  GM L   
Sbjct: 271 FGRMETAYGYFAAMKRE-GVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEF 329

Query: 443 TIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINV 502
           T   +ID    + + D A+    +      P++    ++ Y+ L+  L K ++  +A +V
Sbjct: 330 TYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLN----VVTYTVLVDGLCKERKVAEAEDV 385

Query: 503 LEEMIFSGIVPDVQTFSGLMY-HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           L  M  +G+  +   ++ L++ HF  +  EK +  L S ++  G+E D  ++  LIQ  C
Sbjct: 386 LRMMEKAGVRANELLYTTLIHGHFMNKNSEKAL-GLLSEMKNKGLELDISLYGALIQGLC 444

Query: 562 KY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
                         +  S L P+      +  + +K G+  EA A+ ++
Sbjct: 445 NVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQK 493



 Score = 43.5 bits (101), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 12/95 (12%)

Query: 510 GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------ 563
           G +PDV TF+ L+  +   G+   V++L   +R++G + D   +  LI  +CK+      
Sbjct: 218 GCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETA 277

Query: 564 ------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                 +    +M +  T      +  KEG  +EA
Sbjct: 278 YGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREA 312



 Score = 42.4 bits (98), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 6/159 (3%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           +V+    ++  L + G +     L ++++  G      T   +ID YG   + D   +  
Sbjct: 187 NVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLV 246

Query: 465 HDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
            + R      S  K  ++ Y++L+    K  R   A      M   G++ +V TFS  + 
Sbjct: 247 EEMRR-----SGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVD 301

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            F  +G  +   KLF+ +R  G+  + + +  LI   CK
Sbjct: 302 AFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCK 340



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 20/153 (13%)

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
           LAR     LV RL  +L +  +     T  ++IDF  + K+ + A     + R+L    S
Sbjct: 167 LARDRSGRLVRRLFEQLPAPNV----FTFNIVIDF--LCKEGELA-----EARSL---FS 212

Query: 476 KFKLM------LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
           + K M      + ++SL+    KC    +   ++EEM  SG   DV T++ L+  F   G
Sbjct: 213 RMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFG 272

Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
             +     F+ +++ GV  +   F   + A+CK
Sbjct: 273 RMETAYGYFAAMKREGVMANVVTFSTFVDAFCK 305



 Score = 38.9 bits (89), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG--DEKIVQKLF 538
           ++Y++++    K  +  +AI +L++++ SG  P+V T+  L+      G  DE I    F
Sbjct: 469 IIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISH--F 526

Query: 539 SMVRQNGVEPDAYMFKVLIQAYCK 562
           + +R  G++P+   +  L+   CK
Sbjct: 527 NKMRDLGLDPNVQAYTALVDGLCK 550


>gi|449445409|ref|XP_004140465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Cucumis sativus]
 gi|449518107|ref|XP_004166085.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Cucumis sativus]
          Length = 578

 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 96/237 (40%), Gaps = 34/237 (14%)

Query: 385 SPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI 444
            P  +W FF WV   P Y H + +   M+ IL  H H +    L+ K+        F + 
Sbjct: 47  GPSLSWAFFKWVELIPDYKHSLQSSWAMIFILTEHKHFKTAQGLLEKIAHK----DFISS 102

Query: 445 RLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLE 504
            L+++          AL   +D+  +   I  + LM++Y         CK   DAI VLE
Sbjct: 103 PLVLN----------ALVTSYDNPDVNAHILSW-LMIIY-------VNCKMPQDAIQVLE 144

Query: 505 EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY- 563
            M   G  P++   + L+   A       V K +  + + GV P+ +++ VLI A CK  
Sbjct: 145 YMRLHGFKPNLHACTVLLNSLAKDRLTDTVWKSYKKMIRVGVVPNIHIYNVLIHACCKSG 204

Query: 564 -----------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA 609
                      +   ++ PD  T   L     ++    EA  V++R E+    P + 
Sbjct: 205 DVEKAEQLVCEMELKSVFPDLYTYNTLISLYSRKSLHYEALCVQDRMERAGVSPDIV 261



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 3/161 (1%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+     SGD+E       E   ++      +YN ++S+Y++   ++EA+    ++   G
Sbjct: 196 LIHACCKSGDVEKAEQLVCEMELKSVFPDLYTYNTLISLYSRKSLHYEALCVQDRMERAG 255

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  TY  +I      GK+  A+++F  +    +      Y  L++G+  V  F+EA 
Sbjct: 256 VSPDIVTYNSLIYGFCKEGKMREAVKLFREIK--DVSPNHVTYTTLIDGYCRVNDFEEAL 313

Query: 263 SLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
            L   M   G   G A     L ++ E G I+ AN+ L EM
Sbjct: 314 RLCKVMEAKGLHLGVATYNSVLRKLCEEGRIRDANKLLNEM 354



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 67/167 (40%), Gaps = 5/167 (2%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+  Y    D E  L        +   L   +YN V+    + G+  +A +   +
Sbjct: 294 VTYTTLIDGYCRVNDFEEALRLCKVMEAKGLHLGVATYNSVLRKLCEEGRIRDANKLLNE 353

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + +    P++ T   +I     +G + SAL+V S +    ++  S  Y  L+ GF  V  
Sbjct: 354 MGERKVEPDNVTCNTLINAYCKIGDMKSALKVKSKMLDAGLQLDSFTYKALIHGFCWVRD 413

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL-----ERMQEMGFIQGANEFL 299
            + AK LL  M D G  PG      L     E   E   I   +EFL
Sbjct: 414 MESAKELLFCMLDVGLSPGYCTYSWLVDGYCELGNEGAIISLLDEFL 460



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 14/130 (10%)

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
           S F  +  Y++L+   ++    ++A+ V + M  +G+ PD+ T++ L+Y F  +G  +  
Sbjct: 220 SVFPDLYTYNTLISLYSRKSLHYEALCVQDRMERAGVSPDIVTYNSLIYGFCKEGKMREA 279

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAY------------CKYLSNSNLMPDAATKELLKKS 582
            KLF  ++   V P+   +  LI  Y            CK +    L    AT   + + 
Sbjct: 280 VKLFREIKD--VSPNHVTYTTLIDGYCRVNDFEEALRLCKVMEAKGLHLGVATYNSVLRK 337

Query: 583 LWKEGRRKEA 592
           L +EGR ++A
Sbjct: 338 LCEEGRIRDA 347



 Score = 42.4 bits (98), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 42/79 (53%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+S+LR L +  R  DA  +L EM    + PD  T + L+  +   GD K   K+ S + 
Sbjct: 331 YNSVLRKLCEEGRIRDANKLLNEMGERKVEPDNVTCNTLINAYCKIGDMKSALKVKSKML 390

Query: 543 QNGVEPDAYMFKVLIQAYC 561
             G++ D++ +K LI  +C
Sbjct: 391 DAGLQLDSFTYKALIHGFC 409


>gi|12323427|gb|AAG51690.1|AC016972_9 hypothetical protein; 66200-63606 [Arabidopsis thaliana]
          Length = 864

 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 122/282 (43%), Gaps = 28/282 (9%)

Query: 41  QLIDSIRLAVRSNSSNSLS-------SLLNDRLLDPFIVTHALRSAPNADSALSIMEALK 93
           QLID I   +R+ S++          S L  RL + F++     +  +    L   +   
Sbjct: 63  QLIDRIFDILRAPSNDGDDRAFYLHLSNLRLRLTEKFVLDVLSHTRYDILCCLKFFDWAA 122

Query: 94  SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN----------L 143
             P F H ++T HA+  +L    R  +L TL+ D     FL+ SV F +          L
Sbjct: 123 RQPGFHHTRATFHAIFKIL----RGAKLVTLMID-----FLDRSVGFESCRHSLRLCDAL 173

Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
           +  Y+ +G  ++ L  +   R R   L +  Y+++++   +  K F++ +     I    
Sbjct: 174 VVGYAVAGRTDIALQHFGNMRFRGLDLDSFGYHVLLNALVEE-KCFDSFDVIFDQISVRG 232

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
              + T++++++     GKLD A +   AL             ILV+      +F EA  
Sbjct: 233 FVCAVTHSILVKKFCKQGKLDEAEDYLRALLPNDPAGCGSGLGILVDALCSKRKFQEATK 292

Query: 264 LLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREMLP 304
           LL+E++  G     RA  + +  + + GF+    +FL+++ P
Sbjct: 293 LLDEIKLVGTVNMDRAYNIWIRALIKAGFLNNPADFLQKISP 334



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 2/109 (1%)

Query: 166 RAKLLSTESYNIVM-SVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
           R  +  T + NI+M   Y K  K  +A+  F  + ++G     R Y VMI  L    KLD
Sbjct: 616 RDGITPTVASNILMLQSYLKNEKIADALHFFHDLREQGK-TKKRLYQVMIVGLCKANKLD 674

Query: 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
            A+     +    ++ + + Y + ++     E++DEA  L+NE R  G+
Sbjct: 675 DAMHFLEEMKGEGLQPSIECYEVNIQKLCNEEKYDEAVGLVNEFRKSGR 723


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 98/554 (17%), Positives = 212/554 (38%), Gaps = 50/554 (9%)

Query: 72  VTHALRSAPNADSALSIMEALKSNP----NFSHNQSTLHALATVLAKSQRNHELKTLIGD 127
           V HAL  A   D A  I+  +  N     N ++N + +H  +T+    Q     K    +
Sbjct: 252 VIHALCKARAVDKAQGILRQMVGNGVQPDNVTYN-TLIHGYSTLGQWKQAVRMFK----E 306

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           ++S   +  +V     + +    G +E     ++    +   L+  SY+ ++  YA  G 
Sbjct: 307 MTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGC 366

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
             +    F  ++ +G +PN   + +++      G +  A+ +F  +    +      YL 
Sbjct: 367 LVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLA 426

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM---- 302
           ++  F  +   D+A    N M D G  P  A+ +  ++     G +  A E + E+    
Sbjct: 427 VIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKG 486

Query: 303 ----------LPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
                     L +   K  R +E     D        + V I         +D   L   
Sbjct: 487 LGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNI-----FTSLIDGYCLIGK 541

Query: 353 LDEW---SPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYAL 409
           + E       +VS+  +   V    LV    ++ +  +    F        G     +  
Sbjct: 542 MSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILF--RELLHKGVKPTTFTY 599

Query: 410 EKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRT 469
             +L  L   G       +  ++   G+ +   T  +++     +   + A+  F   + 
Sbjct: 600 GIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVF---QK 656

Query: 470 LCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
           LC    KF +++L + ++  + K +R  +A  +   +   G+VP VQT++ +M +   +G
Sbjct: 657 LCAMNVKFDIVIL-NIMISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMMENLIKEG 715

Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQA------------YCKYLSNSNLMPDAATKE 577
             +  + +FS++ ++G+ P ++   V+++             Y   +   +++ +A+T  
Sbjct: 716 SVEEAEGVFSVMLKSGLSPTSHFINVIVRTLLEKGEIVKAGIYMCRVDGKSILFEASTAS 775

Query: 578 LLKKSLWKEGRRKE 591
           +L      +G+ +E
Sbjct: 776 MLLSLFSCKGKHRE 789



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 12/123 (9%)

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
           +++ L+    KC    +A+ + E+M   G+ PDV T+  +++ F   G        F+ +
Sbjct: 388 VFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHM 447

Query: 542 RQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRR 589
              GVEP+  +++ LIQ +C +            + N  L P   +   L   L KEGR 
Sbjct: 448 IDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRV 507

Query: 590 KEA 592
            EA
Sbjct: 508 FEA 510



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 18/128 (14%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +++YS+++  L K  +  +A ++  EM   G+ P+V T++ +++        + V K   
Sbjct: 211 VVVYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALC---KARAVDKAQG 267

Query: 540 MVRQ---NGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLW 584
           ++RQ   NGV+PD   +  LI  Y             K +++  ++P+  T       L 
Sbjct: 268 ILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLC 327

Query: 585 KEGRRKEA 592
           K GR +EA
Sbjct: 328 KHGRIEEA 335



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 1/141 (0%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           Y+ V+    K GK  EA + F ++  +G  PN  TY  +I  L     +D A  +   + 
Sbjct: 214 YSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMV 273

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA-MRVALERMQEMGFIQ 293
              ++  +  Y  L+ G+  + ++ +A  +  EM   G  P        +  + + G I+
Sbjct: 274 GNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIE 333

Query: 294 GANEFLREMLPDKRIKNVRYY 314
            A EF   ML      N+  Y
Sbjct: 334 EAREFFDSMLAKGHKLNIISY 354


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 93/509 (18%), Positives = 201/509 (39%), Gaps = 51/509 (10%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T ++    L K  R+ E       +++        ++  L+  Y++ G    ++  +
Sbjct: 369 NIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLF 428

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           N  +      +   + I++  YAK G   +A+  F ++  +G  P+  TY+ +I     +
Sbjct: 429 NSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRM 488

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR 280
           G+L  A+E F+ +    I+  +  Y  +++GF       +AK L++EM + G        
Sbjct: 489 GRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKG-------- 540

Query: 281 VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQL 340
             + R   + F    +  +  +  D R+ +     D + D  +       GV     +  
Sbjct: 541 --IPRPDIVFF----SSVINSLCKDGRVMDAHDIFDLATDIGER-----PGV-----ITF 584

Query: 341 KPWLDPKALANTLDEW-----SPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCW 395
              +D   L   +D+      + EVV +  D    + T L      +FK+         +
Sbjct: 585 NSLIDGYCLVGKMDKAFKILDAMEVVGVEPDI-VTYNTLLD----GYFKNGRINDGLTLF 639

Query: 396 VAYQ-PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS 454
              Q  G   +      ML  L R G      +   ++   G  +  S   +I+     +
Sbjct: 640 REMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRN 699

Query: 455 KKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
             AD A+  F    T+     KF + +L ++++  + K +R  +A  +   +  SG++P+
Sbjct: 700 NCADEAIILFQKLGTM---NVKFSITIL-NTMINAMYKVQRKEEAKELFATISASGLLPN 755

Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA------------YCK 562
             T+  ++ +    G  +    +FS + ++G+ P + +   +I+             Y  
Sbjct: 756 ESTYGVMIINLLKDGGVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKAGNYLS 815

Query: 563 YLSNSNLMPDAATKELLKKSLWKEGRRKE 591
            +    ++ +A+T  L+     ++G+ +E
Sbjct: 816 KVDGKRILLEASTTSLMLSLFSRKGKYQE 844



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/453 (18%), Positives = 167/453 (36%), Gaps = 54/453 (11%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAI--PNSRTYTVMIEHLVNLGKLDSALEVFS 231
           SY+IV+        +  A++  + +  +G    P+   Y+ +I    N G+   A  +F 
Sbjct: 230 SYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHGFFNEGETGKACSLFH 289

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP---------------G 276
            +    +K     Y ++++        D+A+ +L +M  DG  P               G
Sbjct: 290 EMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLG 349

Query: 277 RAMRVA--LERMQEMGFIQG---ANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSG 331
           R    A     M++ G I      N FL  +    R K    + D       + D     
Sbjct: 350 RLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDI---- 405

Query: 332 VRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWH 391
              +Y   L  +      A+ +  ++    + +A    V+T  +     R     + A  
Sbjct: 406 --FSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGM--VDDAML 461

Query: 392 FFCWVAYQPGYTHDVYALEKMLTILARHGHV----ELVDRLIAKLRSDGMRLPFSTIRLI 447
            F  +  Q G + DV     +++  +R G +    E  ++++A+       +  S I+  
Sbjct: 462 IFTEMQ-QQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGF 520

Query: 448 IDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMI 507
               G+ K  +   +  +        I +  + + +SS++ +L K  R  DA ++ +   
Sbjct: 521 CMHGGLVKAKELVSEMINKG------IPRPDI-VFFSSVINSLCKDGRVMDAHDIFDLAT 573

Query: 508 FSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK----- 562
             G  P V TF+ L+  + L G      K+   +   GVEPD   +  L+  Y K     
Sbjct: 574 DIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRIN 633

Query: 563 -------YLSNSNLMPDAATKELLKKSLWKEGR 588
                   +    + P+  T  ++   L++ GR
Sbjct: 634 DGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGR 666



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 62/303 (20%), Positives = 127/303 (41%), Gaps = 33/303 (10%)

Query: 334 IAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVC-KVLRH--FKSPET-- 388
           ++Y + LK   D     N++ + + +++ ++A      +  +V    + H  F   ET  
Sbjct: 229 VSYSIVLKALCD-----NSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHGFFNEGETGK 283

Query: 389 AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII 448
           A   F  +  Q G   DV     ++  L +   ++  + ++ ++ +DG +    T   +I
Sbjct: 284 ACSLFHEMTRQ-GVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMI 342

Query: 449 DFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF 508
             Y    +   A K F + +   G I     ++  +S L +L K  R  +A    + M  
Sbjct: 343 HGYATLGRLKEAAKMFREMKKR-GLIPN---IVTCNSFLASLCKHGRSKEAAEFFDSMTA 398

Query: 509 SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY----- 563
            G  PD+ ++  L++ +A +G    +  LF+ ++ NG+  + ++F +LI AY K      
Sbjct: 399 KGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDD 458

Query: 564 -------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWA 616
                  +    + PD  T   +  +  + GR  +A       EK N + +  ++ +   
Sbjct: 459 AMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAM------EKFNQMVARGIQPNTAV 512

Query: 617 VSS 619
            SS
Sbjct: 513 YSS 515



 Score = 46.6 bits (109), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 28/139 (20%), Positives = 62/139 (44%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           +V +  ++  Y+T G L+     + E ++R  + +  + N  ++   K G++ EA E F 
Sbjct: 335 TVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFD 394

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
            +  +G  P+  +Y  ++    + G     + +F+++    I      + IL+  +    
Sbjct: 395 SMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRG 454

Query: 257 RFDEAKSLLNEMRDDGKFP 275
             D+A  +  EM+  G  P
Sbjct: 455 MVDDAMLIFTEMQQQGVSP 473



 Score = 43.1 bits (100), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 69/159 (43%), Gaps = 2/159 (1%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + +A R+    +  L  M  L   PN       L AL    + SQR  +L  ++     +
Sbjct: 202 LCYANRTEEAVNVLLHRMSELGCVPNAVSYSIVLKALCDN-SMSQRALDLLQMMAKQGGA 260

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
              +V V +  ++  +   G+     S ++E  ++       +YN+++    K     +A
Sbjct: 261 CSPDV-VAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKA 319

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
               RQ+  +GA P++ TY+ MI     LG+L  A ++F
Sbjct: 320 ELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMF 358



 Score = 42.7 bits (99), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 13/124 (10%)

Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           DA+ +  EM   G+ PDV T+S ++  F+  G      + F+ +   G++P+  ++  +I
Sbjct: 458 DAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSII 517

Query: 558 QAYCKY------------LSNSNL-MPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND 604
           Q +C +            + N  +  PD      +  SL K+GR  +A  + +    I +
Sbjct: 518 QGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGE 577

Query: 605 VPSL 608
            P +
Sbjct: 578 RPGV 581


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 99/232 (42%), Gaps = 2/232 (0%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + H   S  N + A  I++A++       +  T  +L + + K  R  E   L   +   
Sbjct: 290 IIHGYSSRGNIEGARRILDAMRVK-GIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEI 348

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
             +  +V +  L+  Y   GDLE   S  +E  ++  + S  +YN+++      G+  EA
Sbjct: 349 GLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEA 408

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
            +  +++  +G IP++ TY ++I      G    A ++ + +    I+ T   Y  L+  
Sbjct: 409 DDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYV 468

Query: 252 FVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREM 302
                R  EA  L  ++ D G  P   M  A+ +     G ++ A   L+EM
Sbjct: 469 LSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEM 520



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 12/124 (9%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           + Y+ L+   ++C     A ++  EM+  GI P   T++ L+Y  + +   K    LF  
Sbjct: 425 ITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEK 484

Query: 541 VRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGR 588
           +   GV PD  MF  ++  +C            K +   ++ PD  T   L +   +EG+
Sbjct: 485 ILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGK 544

Query: 589 RKEA 592
            +EA
Sbjct: 545 VEEA 548



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 12/117 (10%)

Query: 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           +L+ M   GI PD  T+  L+     +G  +    LF  + + G+ P+A  +  LI  YC
Sbjct: 306 ILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYC 365

Query: 562 KY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
                         +    +MP  +T  LL  +L+ EGR  EA  + +   K   +P
Sbjct: 366 NKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIP 422



 Score = 45.8 bits (107), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 34/173 (19%), Positives = 75/173 (43%)

Query: 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
           ST + L   L    R  E   +I ++     +  ++ +  L+  YS  G+ +      NE
Sbjct: 390 STYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNE 449

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
              +    +  +Y  ++ V ++  +  EA + F +++D+G  P+   +  M++     G 
Sbjct: 450 MLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGN 509

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           ++ A  +   +    +      +  L++G     + +EA+ LL+EM+  G  P
Sbjct: 510 VERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKP 562



 Score = 43.1 bits (100), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 49/102 (48%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++NI+++V  K GK  +A E    +   G  PN  +Y  +I    + G ++ A  +  A+
Sbjct: 251 TFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAM 310

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            +  I+  S  Y  L+ G     R +EA  L ++M + G  P
Sbjct: 311 RVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVP 352



 Score = 42.4 bits (98), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 24/112 (21%), Positives = 53/112 (47%), Gaps = 12/112 (10%)

Query: 510 GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------- 562
           G  P+V +++ +++ ++ +G+ +  +++   +R  G+EPD+Y +  LI   CK       
Sbjct: 279 GFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEA 338

Query: 563 -----YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA 609
                 +    L+P+A T   L      +G  + A +  +   K   +PS++
Sbjct: 339 SGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVS 390



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 35/64 (54%)

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A +  +EM+  GI+P V T++ L++   ++G       +   +R+ G+ PDA  + +LI 
Sbjct: 373 AFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILIN 432

Query: 559 AYCK 562
            Y +
Sbjct: 433 GYSR 436



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 51/123 (41%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F  LMQ     G +E      +E ++R       SYN ++S Y + G   +A     +
Sbjct: 530 VTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDE 589

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++  G  P   TY  +I+ L    + D A E+   +    I      YL L+EG   V+ 
Sbjct: 590 MLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNVDT 649

Query: 258 FDE 260
             E
Sbjct: 650 LVE 652


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 94/235 (40%), Gaps = 43/235 (18%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYG-------- 452
           G   D Y     ++ L + G +E    LI K+   G+     T   +ID Y         
Sbjct: 281 GLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKA 340

Query: 453 -------ISKKADAALKAFH-------------DDRTLCGPISKFKLM---LLYSSLLRT 489
                  ISK   A+L  ++             D   +   + +  +M   + ++ L+  
Sbjct: 341 YAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILING 400

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
             +C     A  +L+EM+  GI P + T++ L+Y    +   K    LFS ++Q G+ PD
Sbjct: 401 YCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPD 460

Query: 550 AYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
             +F  LI  +C            K + N  ++PD  T   L +   +EG+ +EA
Sbjct: 461 IIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEA 515



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 81/455 (17%), Positives = 171/455 (37%), Gaps = 70/455 (15%)

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRT-------------- 209
           R R    +T  +++++  Y +  K  EA+E F  + ++G +PN  T              
Sbjct: 138 RDRVDAKTTLIFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRT 197

Query: 210 ---------------------YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
                                + +MI  L   GKL  A E    +  + +K     Y  +
Sbjct: 198 QMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTI 257

Query: 249 VEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKR 307
           + G     +F  A+ +   M+D G  P        +  + + G ++ A+  + +ML    
Sbjct: 258 IHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGL 317

Query: 308 IKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADA 367
           + N   Y    D   ++ D + +    AY    +  +  K +  +L  ++  + +L  + 
Sbjct: 318 VPNAVTYNALIDGYCNKGDLDKA---YAY----RDEMISKGIMASLVTYNLFIHALFMEG 370

Query: 368 KFVWTTRLVCKVLRHFKSPETAWHFFCWVAY-----------------QPGYTHDVYALE 410
           +      ++ ++      P+   H      Y                   G    +    
Sbjct: 371 RMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYT 430

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA---LKAFHDD 467
            ++ +L +   ++  D L +K++ +G+         +ID +  +   D A   LK   + 
Sbjct: 431 SLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNM 490

Query: 468 RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
           + L   I+       Y++L++   +  +  +A  +L+EM   GI PD  +++ L+  ++ 
Sbjct: 491 KVLPDEIT-------YNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSK 543

Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           +GD K   ++   +   G +P    +  LIQ  CK
Sbjct: 544 RGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCK 578



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 90/209 (43%), Gaps = 6/209 (2%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T ++  + L K  R  E   LI  +     +  +V +  L+  Y   GDL+   +  +E 
Sbjct: 288 TYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEM 347

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
             +  + S  +YN+ +      G+  +A    +++ ++G +P++ T+ ++I      G  
Sbjct: 348 ISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDA 407

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
             A  +   +    I+ T   Y  L+       R  EA +L ++++ +G  P   +  AL
Sbjct: 408 KRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNAL 467

Query: 284 -ERMQEMGFIQGANEFLREM-----LPDK 306
            +     G I  A + L+EM     LPD+
Sbjct: 468 IDGHCANGNIDRAFQLLKEMDNMKVLPDE 496



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/133 (22%), Positives = 60/133 (45%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  Y   GD +      +E   +    +  +Y  ++ V  K  +  EA   F ++  EG
Sbjct: 397 LINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEG 456

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +P+   +  +I+     G +D A ++   +  M++      Y  L++G+    + +EA+
Sbjct: 457 LLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEAR 516

Query: 263 SLLNEMRDDGKFP 275
            LL+EM+  G  P
Sbjct: 517 QLLDEMKRRGIKP 529



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 59/136 (43%)

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L+ ++ + K L   + +  LMQ Y   G +E      +E ++R       SYN ++S Y+
Sbjct: 483 LLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYS 542

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           K G   +A     +++  G  P   TY  +I+ L    + + A E+   +    I     
Sbjct: 543 KRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDS 602

Query: 244 QYLILVEGFVGVERFD 259
            YL ++E    V+  +
Sbjct: 603 TYLSIIEAMETVDDLE 618



 Score = 43.1 bits (100), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 53/270 (19%), Positives = 100/270 (37%), Gaps = 65/270 (24%)

Query: 395 WVAYQPGYTHDV----YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF 450
           WV Y   +  ++    Y    M+ +L + G ++     I  + + G++    T   II  
Sbjct: 201 WVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHG 260

Query: 451 YGISKKADAALKAFH--DDRTL---CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEE 505
           + +  K   A   F    D+ L   C           Y+S +  L K  R  +A  ++ +
Sbjct: 261 HCLRGKFQRARVIFQTMKDKGLEPDC---------YTYNSFISGLCKEGRLEEASGLICK 311

Query: 506 MIFSGIVPDVQTFSGLMYHFALQGD--------EKIVQK--------------------- 536
           M+  G+VP+  T++ L+  +  +GD        ++++ K                     
Sbjct: 312 MLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGR 371

Query: 537 ------LFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKEL 578
                 +   +R+ G+ PDA    +LI  YC+             +    + P   T   
Sbjct: 372 MGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTS 431

Query: 579 LKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
           L   L K  R KEA A+  + ++   +P +
Sbjct: 432 LIYVLGKRNRMKEADALFSKIQQEGLLPDI 461


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 10/217 (4%)

Query: 96  PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLEL 155
           P+F    S +HAL    A  +    L+ ++    +   L  +  + NL+  YS++G  + 
Sbjct: 252 PDFVTYSSVVHALCKARAMDKAEAFLRQMV----NKGVLPNNWTYNNLIYGYSSTGQWKE 307

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
            +  + E R+ + L    + +++M    K GK  EA + F  +  +G  PN  +YT+M+ 
Sbjct: 308 AVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLN 367

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                G L    ++F  +    I      + +L++ +      D+A  + NEMRD G  P
Sbjct: 368 GYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKP 427

Query: 276 GRAM-RVALERMQEMGFIQGANEFLREML-----PDK 306
                R  +  +  +G +  A E   +M+     PDK
Sbjct: 428 DVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDK 464



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 81/434 (18%), Positives = 153/434 (35%), Gaps = 81/434 (18%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  ++  +   GD+      + E  QR       +Y+ V+    K     +A    RQ
Sbjct: 220 VAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQ 279

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++++G +PN+ TY  +I    + G+   A+ VF  +    I        +L+       +
Sbjct: 280 MVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGK 339

Query: 258 FDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
             EA+ + + M   G+ P   +  + L      G +    +    ML D    ++     
Sbjct: 340 IKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDI----- 394

Query: 317 GSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWS--------PEVVSLLADAK 368
                              + V +K + +   L   +  ++        P+VV       
Sbjct: 395 -----------------YTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVV------- 430

Query: 369 FVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRL 428
              T R V   L      + A   F  +  Q G   D YA   ++     HG +     L
Sbjct: 431 ---TYRTVIAALCRIGKMDDAMEKFNQMIDQ-GVAPDKYAYHCLIQGFCTHGSLLKAKEL 486

Query: 429 IAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLR 488
           I+++ ++GM L                                        ++ +SS++ 
Sbjct: 487 ISEIMNNGMHLD---------------------------------------IVFFSSIIN 507

Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548
            L K  R  DA N+ +  +  G+ P    +S LM  + L G  +   ++F  +   G+EP
Sbjct: 508 NLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEP 567

Query: 549 DAYMFKVLIQAYCK 562
           +  ++  L+  YCK
Sbjct: 568 NDVVYGTLVNGYCK 581



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 60/133 (45%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+Q + T G L       +E       L    ++ +++   K G+  +A   F   ++ G
Sbjct: 470 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVG 529

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P +  Y+++++    +GK++ AL VF A+    I+     Y  LV G+  + R DE  
Sbjct: 530 LHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGL 589

Query: 263 SLLNEMRDDGKFP 275
           SL  EM   G  P
Sbjct: 590 SLFREMLQKGIKP 602



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 80/170 (47%), Gaps = 2/170 (1%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV-NFMNLMQWYSTSGDLELVLSTWNE 162
           TL  L   L K  +  E + +  D  + K  N +V ++  ++  Y+T G L  +   ++ 
Sbjct: 326 TLSMLMGSLCKYGKIKEARDVF-DTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDL 384

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
                      ++N+++  YA  G   +A+  F ++ D G  P+  TY  +I  L  +GK
Sbjct: 385 MLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGK 444

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +D A+E F+ +    +      Y  L++GF       +AK L++E+ ++G
Sbjct: 445 MDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNG 494



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/233 (21%), Positives = 96/233 (41%), Gaps = 2/233 (0%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           V HAL  A   D A + +  +  N     N  T + L    + + +  E   +  ++   
Sbjct: 260 VVHALCKARAMDKAEAFLRQM-VNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRH 318

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
             L   V    LM      G ++     ++    + +  +  SY I+++ YA  G   + 
Sbjct: 319 SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDM 378

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
            + F  ++ +G  P+  T+ V+I+   N G LD A+ +F+ +    +K     Y  ++  
Sbjct: 379 TDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAA 438

Query: 252 FVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREML 303
              + + D+A    N+M D G  P + A    ++     G +  A E + E++
Sbjct: 439 LCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIM 491



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 73/179 (40%), Gaps = 6/179 (3%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+  Y   G ++  LS + E  Q+    ST  YNI++    + G+   A   F +
Sbjct: 570 VVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHE 629

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + + G   N  TY +++  L      D A+ +F  L  M +K        ++ G     R
Sbjct: 630 MTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRR 689

Query: 258 FDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREML-----PDKRIKN 310
            +EAK L   +   G  P      + +  + + G ++ A +    M      PD R+ N
Sbjct: 690 VEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLN 748



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 47/98 (47%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           Y+++M  Y   GK  +A+  F  ++  G  PN   Y  ++     +G++D  L +F  + 
Sbjct: 537 YSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREML 596

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
              IK ++  Y I+++G     R   AK   +EM + G
Sbjct: 597 QKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESG 634



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 12/121 (9%)

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           S L+ +L K  +  +A +V + M   G  P+V +++ ++  +A +G    +  LF ++  
Sbjct: 328 SMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLG 387

Query: 544 NGVEPDAYMFKVLIQAY--CKYLSNSNLM----------PDAATKELLKKSLWKEGRRKE 591
           +G+ PD Y F VLI+AY  C  L  + ++          PD  T   +  +L + G+  +
Sbjct: 388 DGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDD 447

Query: 592 A 592
           A
Sbjct: 448 A 448



 Score = 46.6 bits (109), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 45/81 (55%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YSS++  L K +    A   L +M+  G++P+  T++ L+Y ++  G  K   ++F  +R
Sbjct: 257 YSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMR 316

Query: 543 QNGVEPDAYMFKVLIQAYCKY 563
           ++ + PD     +L+ + CKY
Sbjct: 317 RHSILPDVVTLSMLMGSLCKY 337



 Score = 46.2 bits (108), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 23/156 (14%)

Query: 452 GISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
           G S +AD  L+   +   +C P      ++ YS+++    K      A ++ +EM+  GI
Sbjct: 196 GKSGQADDLLRMMAEGGAVCSPD-----VVAYSTVIDGFFKEGDVNKACDLFKEMVQRGI 250

Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ---NGVEPDAYMFKVLIQAYC------- 561
            PD  T+S +++        + + K  + +RQ    GV P+ + +  LI  Y        
Sbjct: 251 PPDFVTYSSVVHALC---KARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKE 307

Query: 562 -----KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                K +   +++PD  T  +L  SL K G+ KEA
Sbjct: 308 AVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEA 343



 Score = 43.5 bits (101), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 81/207 (39%), Gaps = 19/207 (9%)

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALK 462
           T   YA+  ++    R    EL      +L   G+R+       ++  +  +K+ D AL 
Sbjct: 110 TSHTYAI--LMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEALD 167

Query: 463 AFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV--PDVQTFSG 520
                    G +     +  YS LL++L    +   A ++L  M   G V  PDV  +S 
Sbjct: 168 ILLHRTPELGCVPD---VFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYST 224

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSN 568
           ++  F  +GD      LF  + Q G+ PD   +  ++ A CK             + N  
Sbjct: 225 VIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKG 284

Query: 569 LMPDAATKELLKKSLWKEGRRKEAAAV 595
           ++P+  T   L       G+ KEA  V
Sbjct: 285 VLPNNWTYNNLIYGYSSTGQWKEAVRV 311



 Score = 42.0 bits (97), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 38/83 (45%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           ++ L++    C     A+ +  EM   G+ PDV T+  ++      G      + F+ + 
Sbjct: 397 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 456

Query: 543 QNGVEPDAYMFKVLIQAYCKYLS 565
             GV PD Y +  LIQ +C + S
Sbjct: 457 DQGVAPDKYAYHCLIQGFCTHGS 479


>gi|218192142|gb|EEC74569.1| hypothetical protein OsI_10130 [Oryza sativa Indica Group]
          Length = 823

 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 103/482 (21%), Positives = 179/482 (37%), Gaps = 104/482 (21%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE---LVL 157
           + ST   L  V  K  R       +GD+     L   +    ++Q +  +G+ E   L  
Sbjct: 175 DNSTYGTLIDVHCKGGRERMALLWLGDMIKRGLLPDEITMSIVLQVHKKAGEYEKAELFF 234

Query: 158 STWN-EYRQRAK---LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
             W+ E   + K     S  +YN ++  Y K G+  +  +TF Q++ EG  PN  T+  M
Sbjct: 235 KRWSLESDVKMKGHPCYSLYTYNTLIDTYGKAGQLEKVSDTFNQMLREGVSPNVVTFNTM 294

Query: 214 IE------HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNE 267
           I        +  +  L   +E F  LP       ++ Y IL+             SL  E
Sbjct: 295 IHVWGKHRRMEQVASLMRTMEEFQCLP------DTRTYNILI-------------SLYRE 335

Query: 268 MRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDD 327
           + D                     I  A  + R+M  +  + +V                
Sbjct: 336 IND---------------------IDVAEYYFRKMKAENLLPDVV--------------- 359

Query: 328 NNSGVRIAYGVQLKPWL-DPKALAN-------TLDEWSPEVVS-LLADAKFVWTTRLVCK 378
             S   + YG  +K  + + +AL          +DE++   V+ +  DA  +        
Sbjct: 360 --SCRTLLYGYSIKGMVTEAQALLKEMYERNMVIDEYTQSAVTRMYVDAGML-------- 409

Query: 379 VLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR 438
                   E AW +F    YQ     +       +      GH+ L ++         M 
Sbjct: 410 --------EQAWRWFEKFNYQL----NSECFSANIDAFGERGHILLAEKAFMCCIKRKM- 456

Query: 439 LPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD 498
           L      ++I  YG+ +K D A +   D     G +  +   L YSSL+  ++  K    
Sbjct: 457 LSTCVCNVMIKAYGLVEKLDEACE-IADGMERYGILPDY---LTYSSLIHLMSTAKLPEK 512

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A+  L +M  + ++ D   +S ++  FA  G+  +V  LF  +  +G++ D Y++ +LI 
Sbjct: 513 ALYYLRKMQAAKLLIDCVPYSVVISCFAKNGNLHMVDCLFREMITSGIQADTYVYSILID 572

Query: 559 AY 560
           AY
Sbjct: 573 AY 574


>gi|224099199|ref|XP_002311400.1| predicted protein [Populus trichocarpa]
 gi|222851220|gb|EEE88767.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           +SS++  L + ++  DA+    EM+  GI P+  T++ L+    L GD     KL   +R
Sbjct: 372 FSSIIDCLCRAQQFDDALGCFSEMVEWGISPNAVTYNILIRSLCLIGDVGRSMKLLKDMR 431

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
           ++G+ PD + F  LIQ++C+             +S   L+P+  T   L K+L++ GR  
Sbjct: 432 KDGISPDIFSFNALIQSFCRMGKVEKAEKMFVSMSTLGLIPNNYTYGALVKALFELGRCD 491

Query: 591 EA 592
           EA
Sbjct: 492 EA 493



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 43/99 (43%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           ST  YN V+    K+     A   F+Q+  +   P+  TY ++I  +  +G +D AL + 
Sbjct: 53  STRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNMLIHGVCKIGVVDEALRLV 112

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
             +           Y  L+ GF   +R DEA  +   M+
Sbjct: 113 KQMEGFGYSANVYTYTNLIYGFCNAKRVDEAFRVFETMK 151



 Score = 40.8 bits (94), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/102 (21%), Positives = 50/102 (49%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YNI++      G    +++  + +  +G  P+  ++  +I+    +GK++ A ++F ++
Sbjct: 406 TYNILIRSLCLIGDVGRSMKLLKDMRKDGISPDIFSFNALIQSFCRMGKVEKAEKMFVSM 465

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             + +   +  Y  LV+    + R DEAK +   M  +G  P
Sbjct: 466 STLGLIPNNYTYGALVKALFELGRCDEAKKMFFSMEVNGCVP 507



 Score = 40.4 bits (93), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 35/169 (20%), Positives = 74/169 (43%)

Query: 107 ALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR 166
           AL   L K+ R  E    +  +   + ++   ++  L+  +  +  +   +  +   + R
Sbjct: 269 ALIETLYKAGRGMEGDRYLNQMVKDRLVSDVFSYNMLIDCFCKANVMNKAVMVFKVMQDR 328

Query: 167 AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
               +  ++N ++S + K G+  +A E  + +++ G  P+  T++ +I+ L    + D A
Sbjct: 329 GVSPNLVTFNTLISGHCKDGEVHKARELLQMLLELGLKPDIFTFSSIIDCLCRAQQFDDA 388

Query: 227 LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           L  FS +    I   +  Y IL+     +     +  LL +MR DG  P
Sbjct: 389 LGCFSEMVEWGISPNAVTYNILIRSLCLIGDVGRSMKLLKDMRKDGISP 437



 Score = 38.9 bits (89), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 6/98 (6%)

Query: 471 CGPISKF-----KLML-LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
           CG + KF     KL    Y +L+ TL K  R  +    L +M+   +V DV +++ L+  
Sbjct: 249 CGILDKFIARGAKLGFSFYLALIETLYKAGRGMEGDRYLNQMVKDRLVSDVFSYNMLIDC 308

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           F           +F +++  GV P+   F  LI  +CK
Sbjct: 309 FCKANVMNKAVMVFKVMQDRGVSPNLVTFNTLISGHCK 346



 Score = 38.9 bits (89), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 94/415 (22%), Positives = 155/415 (37%), Gaps = 56/415 (13%)

Query: 193 ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
           E F Q+   G  P++R Y  +I+ LV    LD A   F  +     K     Y +L+ G 
Sbjct: 40  EIFGQISFLGITPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNMLIHGV 99

Query: 253 VGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQG--ANEFLREMLPDKRIKN 310
             +   DEA  L+ +M       G +  V        GF      +E  R +    +++N
Sbjct: 100 CKIGVVDEALRLVKQMEG----FGYSANVYTYTNLIYGFCNAKRVDEAFR-VFETMKLRN 154

Query: 311 VRYYEDGSDDDEDENDDNNSGVR-IAYGVQLKPWLDPKALANTLD--EWSPEVVSLLADA 367
           V              + N + +R + +GV  +     +A    +D  E  P +  L  D 
Sbjct: 155 V--------------NPNEATIRSLVHGV-FRCVAPREAFELVIDFIEKEPVLGRLACD- 198

Query: 368 KFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDR 427
                T L C  L     P  A      +  + GY  D       +T L +   V     
Sbjct: 199 -----TLLCC--LSEKCMPREAGALLRKLG-ERGYLPDSSTFNITMTCLLKGLDVNETCG 250

Query: 428 LIAKLRSDGMRLPFS-TIRLIIDFY--GISKKADAALKAFHDDRTLCGPISKFKLMLLYS 484
           ++ K  + G +L FS  + LI   Y  G   + D  L     DR +    S       Y+
Sbjct: 251 ILDKFIARGAKLGFSFYLALIETLYKAGRGMEGDRYLNQMVKDRLVSDVFS-------YN 303

Query: 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544
            L+    K      A+ V + M   G+ P++ TF+ L+      G+    ++L  M+ + 
Sbjct: 304 MLIDCFCKANVMNKAVMVFKVMQDRGVSPNLVTFNTLISGHCKDGEVHKARELLQMLLEL 363

Query: 545 GVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEG 587
           G++PD + F  +I   C+             +    + P+A T  +L +SL   G
Sbjct: 364 GLKPDIFTFSSIIDCLCRAQQFDDALGCFSEMVEWGISPNAVTYNILIRSLCLIG 418


>gi|414881814|tpg|DAA58945.1| TPA: hypothetical protein ZEAMMB73_003881 [Zea mays]
          Length = 792

 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 102/480 (21%), Positives = 173/480 (36%), Gaps = 69/480 (14%)

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           L+ ++E R +      + Y++V+    + G + +AV  F ++   G  P+ R Y + I  
Sbjct: 170 LTLFDEMRGKGCYADAKMYDVVIRACVRGGMHCDAVRLFDEMAGAGVKPDERVYAITISG 229

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
           L  L   D AL+V   +     +     Y  +V+  V V R DEA  L ++M       G
Sbjct: 230 LCKLRDADRALQVLGKMREAGFEPWELTYSSVVDVLVKVGRMDEALRLKDQML---LATG 286

Query: 277 RAMRVALERMQEMGF-----IQGANEFLREMLPDKRI-KNVRY--YEDGSDDDEDENDDN 328
           + M V L  M   G+     +  A +   E++ D     NV Y     G  D E  +D+ 
Sbjct: 287 KKMDVVLATMLMHGYCLHGEVGKALDLFDEVVSDGVTPTNVTYGVLIKGC-DAEGMSDET 345

Query: 329 NSGVR--IAYGVQL---------------KPWLDPKALAN-TLDEWSPEVVSLLADAKFV 370
               R  I  G+ L               K W D   L    +D   P+V +      + 
Sbjct: 346 YKLCRQMIEQGLLLSTYEFNLVIKGLLRDKRWKDAIGLLELVVDTGVPDVFT------YG 399

Query: 371 WTTRLVCKVLRHFKSPETA--WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRL 428
                +CK   H K  E    W        +P     +     +L      G ++   +L
Sbjct: 400 CLIHWLCK---HQKLHEAVNLWDKMKEAGVKP----SIVTYHSLLLGYCEKGRMDEALKL 452

Query: 429 IAKLRSDGMRLPFSTIRLIIDFYGISKK----ADAALKAFHDDRTLCGPISKFKLMLLYS 484
            +++   G      T   ++  Y I KK    A A L     +   CG  +       Y+
Sbjct: 453 YSEMPDKGFPPNEVTYTTLMKGY-IKKKAFDNAYALLNEMRQNGVSCGDYT-------YN 504

Query: 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544
            L+  L    R  +   +L+  +  G VP   T++ ++  F   G       ++  +R+ 
Sbjct: 505 ILINGLYMVNRVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKK 564

Query: 545 GVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           G+ P+   +   I  YC+            Y+    + PD A       +  K+G    A
Sbjct: 565 GITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRA 624



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 84/212 (39%), Gaps = 1/212 (0%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T H+L     +  R  E   L  ++    F    V +  LM+ Y      +   +  NE 
Sbjct: 432 TYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEM 491

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
           RQ        +YNI+++      +  E  E  ++ + EG +P + TY  +I   V  G +
Sbjct: 492 RQNGVSCGDYTYNILINGLYMVNRVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMM 551

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA- 282
            SA  ++  +    I      Y   ++G+      D A  LL  +R DG  P  A   A 
Sbjct: 552 GSAFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAF 611

Query: 283 LERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
           ++   + G +  A  FL  +L D    +V  Y
Sbjct: 612 IDTFCKQGNMSRALHFLVLLLKDGLTPDVTVY 643



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 8/145 (5%)

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           +S+ +F  V    +   +W    G LELV+ T         +    +Y  ++    K  K
Sbjct: 359 LSTYEFNLVIKGLLRDKRWKDAIGLLELVVDTG--------VPDVFTYGCLIHWLCKHQK 410

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
             EAV  + ++ + G  P+  TY  ++      G++D AL+++S +P          Y  
Sbjct: 411 LHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTT 470

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDG 272
           L++G++  + FD A +LLNEMR +G
Sbjct: 471 LMKGYIKKKAFDNAYALLNEMRQNG 495



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 99/499 (19%), Positives = 187/499 (37%), Gaps = 77/499 (15%)

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L  ++ S      +V +  L++     G  +       +  ++  LLST  +N+V+    
Sbjct: 313 LFDEVVSDGVTPTNVTYGVLIKGCDAEGMSDETYKLCRQMIEQGLLLSTYEFNLVIKGLL 372

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           +  +  +A+     V+D G +P+  TY  +I  L    KL  A+ ++  +    +K +  
Sbjct: 373 RDKRWKDAIGLLELVVDTG-VPDVFTYGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIV 431

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ-----GANEF 298
            Y  L+ G+    R DEA  L +EM D G  P       L +    G+I+      A   
Sbjct: 432 TYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMK----GYIKKKAFDNAYAL 487

Query: 299 LREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIA-YGVQLKPWLDPKALANTLDEWS 357
           L EM                           +GV    Y   +   ++   + N + E  
Sbjct: 488 LNEM-------------------------RQNGVSCGDYTYNI--LINGLYMVNRVCEVD 520

Query: 358 PEVVSLLADAKFVWTTRLVCKVLRHF-KSPETAWHFFCWVAY-QPGYTHDVYALEKMLTI 415
             +   L++  FV TT     ++  F K+      F  +    + G T ++      +  
Sbjct: 521 EMLKRFLSEG-FVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDG 579

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
             R    +L  +L+  +R DG++   +     ID +   K+ + + +A H          
Sbjct: 580 YCRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTF--CKQGNMS-RALH---------- 626

Query: 476 KFKLMLL----------YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF 525
            F ++LL          Y+S +      K   +A      MI   +V D + ++ L+  F
Sbjct: 627 -FLVLLLKDGLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGF 685

Query: 526 ALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDA 573
           +  G+     +L+S +  N V PD   F  L    C+             +   ++ P+ 
Sbjct: 686 SKVGNVAFALELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNI 745

Query: 574 ATKELLKKSLWKEGRRKEA 592
            T  +L  +  ++G+ +EA
Sbjct: 746 VTYNMLINACVRDGKLQEA 764



 Score = 42.7 bits (99), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 1/116 (0%)

Query: 160 WNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219
           ++  +QR  +  TE Y  ++  ++K G    A+E + +++    IP+ +T+T +   L  
Sbjct: 664 YSMIKQRV-VADTEIYTTLIDGFSKVGNVAFALELYSEMMANHVIPDDKTFTALTHGLCR 722

Query: 220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            G +D A  +   +  + +      Y +L+   V   +  EA  L +EM   G  P
Sbjct: 723 SGDIDGAKRLLDDMRRLDVSPNIVTYNMLINACVRDGKLQEAFQLHDEMLSSGVVP 778



 Score = 41.2 bits (95), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/113 (22%), Positives = 55/113 (48%), Gaps = 12/113 (10%)

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
           +Y++L+   +K      A+ +  EM+ + ++PD +TF+ L +     GD    ++L   +
Sbjct: 677 IYTTLIDGFSKVGNVAFALELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDM 736

Query: 542 RQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKS 582
           R+  V P+   + +LI A  +             + +S ++PD  T ++L ++
Sbjct: 737 RRLDVSPNIVTYNMLINACVRDGKLQEAFQLHDEMLSSGVVPDDTTYDILPRT 789



 Score = 40.4 bits (93), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 13/130 (10%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIF-SGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           L YSS++  L K  R  +A+ + ++M+  +G   DV   + LM+ + L G+      LF 
Sbjct: 256 LTYSSVVDVLVKVGRMDEALRLKDQMLLATGKKMDVVLATMLMHGYCLHGEVGKALDLFD 315

Query: 540 MVRQNGVEPDAYMFKVLIQA------------YCKYLSNSNLMPDAATKELLKKSLWKEG 587
            V  +GV P    + VLI+              C+ +    L+       L+ K L ++ 
Sbjct: 316 EVVSDGVTPTNVTYGVLIKGCDAEGMSDETYKLCRQMIEQGLLLSTYEFNLVIKGLLRDK 375

Query: 588 RRKEAAAVEE 597
           R K+A  + E
Sbjct: 376 RWKDAIGLLE 385


>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 92/464 (19%), Positives = 185/464 (39%), Gaps = 69/464 (14%)

Query: 169 LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALE 228
           L  T  Y+ +++ Y  +    +A+     +I EG +P S T+  ++  L+     D A  
Sbjct: 86  LTYTPLYDTIVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLMCLLIRSNYFDKAWW 145

Query: 229 VFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQ 287
           +F+ L   ++   +  + I+++G      F +   LL  + + G  P   +   L +   
Sbjct: 146 IFNELK-SKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCC 204

Query: 288 EMGFIQGANEFLREM-----LPDKRIKNV---RYYEDGSDDDEDENDDN--NSGV---RI 334
           + G +  A     +M     +P+    +V    +++ G   +  +  +N   SG+     
Sbjct: 205 KYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAY 264

Query: 335 AYGVQLKPWLD---------------PKALANTLDEWSPEVVSLLADAKFVWTTRLVCKV 379
           AY   +  + +                K +A  +  ++  +  L    KF    +LV KV
Sbjct: 265 AYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKV 324

Query: 380 LRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
            +   SP                T+++     ++      G ++   RL  +L+S G+  
Sbjct: 325 NKVGLSPNIV-------------TYNI-----LINGFCDVGKMDTAVRLFNQLKSSGLSP 366

Query: 440 PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDA 499
              T   +I  Y   +    AL    +    C   SK    +L  +  R L   ++  + 
Sbjct: 367 TLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFAR-LNYTEKACEM 425

Query: 500 INVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
            +++E+   SG+VPDV T+S L++   + G+ K   KLF  + +  ++P++ ++  +I  
Sbjct: 426 HSLMEK---SGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHG 482

Query: 560 YCKYLS------------NSNLMPDAAT-----KELLKKSLWKE 586
           YCK  S            +S ++P+ A+       L +   WKE
Sbjct: 483 YCKEGSSYRALRLLNEMVHSGMVPNVASFCSTIGLLCRDEKWKE 526



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 63/136 (46%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  Y   G ++     + E R++       +YNI++    +  K  EAV+   +V   G
Sbjct: 269 LISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVG 328

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             PN  TY ++I    ++GK+D+A+ +F+ L    +  T   Y  L+ G+  VE    A 
Sbjct: 329 LSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGAL 388

Query: 263 SLLNEMRDDGKFPGRA 278
            L+ EM +    P + 
Sbjct: 389 DLVKEMEERCIAPSKV 404



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 66/155 (42%)

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L   + SS      V +  L+  YS   +L   L    E  +R    S  +Y I++  +A
Sbjct: 355 LFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFA 414

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           +     +A E    +   G +P+  TY+V+I  L   G +  A ++F +L  M ++  S 
Sbjct: 415 RLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSV 474

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA 278
            Y  ++ G+        A  LLNEM   G  P  A
Sbjct: 475 IYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVA 509



 Score = 42.4 bits (98), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 43/212 (20%), Positives = 88/212 (41%), Gaps = 30/212 (14%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   + YA   +++     G V+   ++ A++R  G+     T  ++I      KK   A
Sbjct: 258 GIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEA 317

Query: 461 LKAFHDDRTLCGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
           +K  H        ++K  L   ++ Y+ L+       +   A+ +  ++  SG+ P + T
Sbjct: 318 VKLVHK-------VNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVT 370

Query: 518 FSGLMYHFA----LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY---------- 563
           ++ L+  ++    L G   +V+++     +  + P    + +LI A+ +           
Sbjct: 371 YNTLIAGYSKVENLAGALDLVKEM----EERCIAPSKVTYTILIDAFARLNYTEKACEMH 426

Query: 564 --LSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
             +  S L+PD  T  +L   L   G  KEA+
Sbjct: 427 SLMEKSGLVPDVYTYSVLIHGLCVHGNMKEAS 458


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 99/232 (42%), Gaps = 2/232 (0%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + H   S  N + A  I++A++       +  T  +L + + K  R  E   L   +   
Sbjct: 268 IIHGYSSRGNIEGARRILDAMRVK-GIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEI 326

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
             +  +V +  L+  Y   GDLE   S  +E  ++  + S  +YN+++      G+  EA
Sbjct: 327 GLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEA 386

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
            +  +++  +G IP++ TY ++I      G    A ++ + +    I+ T   Y  L+  
Sbjct: 387 DDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYV 446

Query: 252 FVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREM 302
                R  EA  L  ++ D G  P   M  A+ +     G ++ A   L+EM
Sbjct: 447 LSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEM 498



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 12/124 (9%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           + Y+ L+   ++C     A ++  EM+  GI P   T++ L+Y  + +   K    LF  
Sbjct: 403 ITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEK 462

Query: 541 VRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGR 588
           +   GV PD  MF  ++  +C            K +   ++ PD  T   L +   +EG+
Sbjct: 463 ILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGK 522

Query: 589 RKEA 592
            +EA
Sbjct: 523 VEEA 526



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 12/117 (10%)

Query: 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           +L+ M   GI PD  T+  L+     +G  +    LF  + + G+ P+A  +  LI  YC
Sbjct: 284 ILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYC 343

Query: 562 KY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
                         +    +MP  +T  LL  +L+ EGR  EA  + +   K   +P
Sbjct: 344 NKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIP 400



 Score = 45.8 bits (107), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 34/173 (19%), Positives = 75/173 (43%)

Query: 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
           ST + L   L    R  E   +I ++     +  ++ +  L+  YS  G+ +      NE
Sbjct: 368 STYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNE 427

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
              +    +  +Y  ++ V ++  +  EA + F +++D+G  P+   +  M++     G 
Sbjct: 428 MLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGN 487

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           ++ A  +   +    +      +  L++G     + +EA+ LL+EM+  G  P
Sbjct: 488 VERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKP 540



 Score = 43.1 bits (100), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 49/102 (48%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++NI+++V  K GK  +A E    +   G  PN  +Y  +I    + G ++ A  +  A+
Sbjct: 229 TFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAM 288

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            +  I+  S  Y  L+ G     R +EA  L ++M + G  P
Sbjct: 289 RVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVP 330



 Score = 42.0 bits (97), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 24/112 (21%), Positives = 53/112 (47%), Gaps = 12/112 (10%)

Query: 510 GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------- 562
           G  P+V +++ +++ ++ +G+ +  +++   +R  G+EPD+Y +  LI   CK       
Sbjct: 257 GFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEA 316

Query: 563 -----YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA 609
                 +    L+P+A T   L      +G  + A +  +   K   +PS++
Sbjct: 317 SGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVS 368



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 87/194 (44%), Gaps = 7/194 (3%)

Query: 370 VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
           V+T  ++  VL      + A  F  ++    G+  +V +   ++   +  G++E   R++
Sbjct: 227 VYTFNIMVNVLCKEGKLKKAREFIGFME-GLGFKPNVVSYNTIIHGYSSRGNIEGARRIL 285

Query: 430 AKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRT 489
             +R  G+     T   +I   G+ K+      +   D+ +   I      + Y++L+  
Sbjct: 286 DAMRVKGIEPDSYTYGSLIS--GMCKEGRLEEASGLFDKMV--EIGLVPNAVTYNTLIDG 341

Query: 490 LTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548
               K D + A +  +EM+  GI+P V T++ L++   ++G       +   +R+ G+ P
Sbjct: 342 YCN-KGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIP 400

Query: 549 DAYMFKVLIQAYCK 562
           DA  + +LI  Y +
Sbjct: 401 DAITYNILINGYSR 414



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 51/123 (41%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F  LMQ     G +E      +E ++R       SYN ++S Y + G   +A     +
Sbjct: 508 VTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDE 567

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++  G  P   TY  +I+ L    + D A E+   +    I      YL L+EG   V+ 
Sbjct: 568 MLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNVDT 627

Query: 258 FDE 260
             E
Sbjct: 628 LVE 630


>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
 gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
          Length = 786

 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 86/456 (18%), Positives = 163/456 (35%), Gaps = 86/456 (18%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF-EAVETFRQV 198
           +  ++   S +G  E  +  + E R++    +  +YN+V+ VY + G+++   V    ++
Sbjct: 176 YTTVLHALSRAGRYERAVELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEM 235

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
              G  P+  T + +I      G +D A+  F  L           Y  L++ F     +
Sbjct: 236 RAAGVEPDDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNALLQVFGKAGNY 295

Query: 259 DEAKSLLNEMRDDGKFPGRAMRVALE-RMQEMGFIQGANEFLREMLPDKRIKNVRYYEDG 317
            EA  +L EM  DG  P       L       GF + A + L  M     + N   Y   
Sbjct: 296 TEALRVLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNT- 354

Query: 318 SDDDEDENDDNNSGVRIAYG--------VQLKPWLDPKALANTLDEWSPEVVSLLADAKF 369
                         V  AYG        + L   +        ++ ++  +  L   ++F
Sbjct: 355 --------------VMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRF 400

Query: 370 VWTTRLVCKVLRHFKSPE-TAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRL 428
                ++ ++ R   +P    W+                    ML +  + G  + V R+
Sbjct: 401 TVMLEMLGEMSRSGCTPNRVTWN-------------------TMLAVCGKRGMEDYVTRV 441

Query: 429 IAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLR 488
           +  ++S G+ L   T   +I  YG                                    
Sbjct: 442 LEGMKSCGVELSRDTYNTLIAAYG------------------------------------ 465

Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548
              +C    +A  +  EM  +G  P + T++ L+   + QGD    Q + S +R  G +P
Sbjct: 466 ---RCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKP 522

Query: 549 DAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLW 584
           +   + +L+Q Y K  + + +  DA  KE+   +++
Sbjct: 523 NDQSYSLLLQCYAKGGNIAGI--DAIEKEVYGGTVF 556



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 94/509 (18%), Positives = 194/509 (38%), Gaps = 40/509 (7%)

Query: 62  LNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQ 116
           L  R   P +VT+         A N   AL +++ ++ +     +  T + LA   A++ 
Sbjct: 270 LKARGHTPCVVTYNALLQVFGKAGNYTEALRVLKEMEQD-GCQPDAVTYNELAGTYARAG 328

Query: 117 RNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYN 176
              E    +  ++S   L  +  +  +M  Y   G ++  L+ +++ ++   + +  +YN
Sbjct: 329 FYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYN 388

Query: 177 IVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM 236
            ++ +  K  +    +E   ++   G  PN  T+  M+      G  D    V   +   
Sbjct: 389 FILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSC 448

Query: 237 RIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGAN 296
            ++ +   Y  L+  +        A  + NEM   G  P      AL  +      QG  
Sbjct: 449 GVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSR---QGDW 505

Query: 297 EFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEW 356
              + ++   R K  +            ND        +Y + L+ +     +A  +D  
Sbjct: 506 STAQSIVSKMRTKGFK-----------PNDQ-------SYSLLLQCYAKGGNIAG-IDAI 546

Query: 357 SPEVVSLLADAKFVWTTRLVCK--VLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT 414
             EV        +V    LV      R     E A+       Y P    D+     ML+
Sbjct: 547 EKEVYGGTVFPSWVILRTLVIANFKCRRLGGIEKAFQEVKARGYNP----DLVIFNSMLS 602

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI 474
           + A++G    V  +   ++  G+     T   ++D Y    ++  A K  +  ++     
Sbjct: 603 MYAKNGMYSKVTEIFDSIKQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKS----- 657

Query: 475 SKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
           S+ K  ++ Y++++    K     +A  +L EMI  G+ P V T+  L+  +A       
Sbjct: 658 SQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFSE 717

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            +++ + + Q+ ++P    ++ ++ +YCK
Sbjct: 718 AREVINYMIQHNLKPMELTYRRVVDSYCK 746



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 23/225 (10%)

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
           PG   DV A   +L  L+R G  E    L A+LR  G+     T  +++D YG   ++  
Sbjct: 167 PGSRLDVRAYTTVLHALSRAGRYERAVELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWP 226

Query: 460 ALKAFHDDRTLCG-PISKFKLMLLYSSLLRTLTKCKRDF---DAINVLEEMIFSGIVPDV 515
            + A  D+    G     F    +       +  C RD    +A+   E++   G  P V
Sbjct: 227 RIVALLDEMRAAGVEPDDFTASTV-------IAACCRDGLVDEAVAFFEDLKARGHTPCV 279

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------Y 563
            T++ L+  F   G+     ++   + Q+G +PDA  +  L   Y +             
Sbjct: 280 VTYNALLQVFGKAGNYTEALRVLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDT 339

Query: 564 LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
           +++  L+P+A T   +  +    G+  EA A+ ++ +K   VP++
Sbjct: 340 MTSKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNV 384



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 5/173 (2%)

Query: 109 ATVLAKSQRNH---ELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQ 165
           +TV+A   R+    E      D+ +       V +  L+Q +  +G+    L    E  Q
Sbjct: 248 STVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNALLQVFGKAGNYTEALRVLKEMEQ 307

Query: 166 RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
                   +YN +   YA+ G   EA +    +  +G +PN+ TY  ++    N+GK+D 
Sbjct: 308 DGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGKVDE 367

Query: 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVE-RFDEAKSLLNEMRDDGKFPGR 277
           AL +F  +           Y  ++ G +G + RF     +L EM   G  P R
Sbjct: 368 ALALFDQMKKSGCVPNVNTYNFIL-GMLGKKSRFTVMLEMLGEMSRSGCTPNR 419



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 86/204 (42%), Gaps = 16/204 (7%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G+   +     +L +L+R G       +++K+R+ G +    +  L++  Y  +K  + A
Sbjct: 484 GFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCY--AKGGNIA 541

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
                +     G +  F   ++  +L+    KC+R        +E+   G  PD+  F+ 
Sbjct: 542 GIDAIEKEVYGGTV--FPSWVILRTLVIANFKCRRLGGIEKAFQEVKARGYNPDLVIFNS 599

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSN 568
           ++  +A  G    V ++F  ++Q+G+ PD   +  L+  Y K             L +S 
Sbjct: 600 MLSMYAKNGMYSKVTEIFDSIKQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKSSQ 659

Query: 569 LMPDAATKELLKKSLWKEGRRKEA 592
           + PD  +   +     K+G  KEA
Sbjct: 660 VKPDVVSYNTVINGFCKQGLIKEA 683



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 5/192 (2%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A++  E LK+    +    T +AL  V  K+    E   ++ ++        +V +  
Sbjct: 261 DEAVAFFEDLKAR-GHTPCVVTYNALLQVFGKAGNYTEALRVLKEMEQDGCQPDAVTYNE 319

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L   Y+ +G  E      +    +  L +  +YN VM+ Y   GK  EA+  F Q+   G
Sbjct: 320 LAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSG 379

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI--KRTSKQYLILVEGFVGVERFDE 260
            +PN  TY  ++  L    +    LE+   +        R +   ++ V G  G+E  D 
Sbjct: 380 CVPNVNTYNFILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGME--DY 437

Query: 261 AKSLLNEMRDDG 272
              +L  M+  G
Sbjct: 438 VTRVLEGMKSCG 449



 Score = 46.6 bits (109), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 88/203 (43%), Gaps = 10/203 (4%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I     R     + A   ++A   NP+        +++ ++ AK+    ++  +   I  
Sbjct: 567 IANFKCRRLGGIEKAFQEVKARGYNPDLV----IFNSMLSMYAKNGMYSKVTEIFDSIKQ 622

Query: 131 SKFLNVSVNFMNLMQWY---STSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           S      + + +LM  Y   S S + E +L+     + +  ++S   YN V++ + K G 
Sbjct: 623 SGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKSSQVKPDVVS---YNTVINGFCKQGL 679

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
             EA     ++I +G  P   TY  ++    +L     A EV + +    +K     Y  
Sbjct: 680 IKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFSEAREVINYMIQHNLKPMELTYRR 739

Query: 248 LVEGFVGVERFDEAKSLLNEMRD 270
           +V+ +   +RF+EA+S L+E+ +
Sbjct: 740 VVDSYCKAKRFEEARSFLSEVSE 762



 Score = 46.2 bits (108), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 81/436 (18%), Positives = 170/436 (38%), Gaps = 53/436 (12%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D AL++ + +K +     N +T + +  +L K  R   +  ++G++S S      V +  
Sbjct: 366 DEALALFDQMKKS-GCVPNVNTYNFILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNT 424

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           ++      G  + V       +     LS ++YN +++ Y + G    A + + ++   G
Sbjct: 425 MLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAG 484

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P   TY  ++  L   G   +A  + S +     K   + Y +L++ +          
Sbjct: 485 FAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNIAGID 544

Query: 263 SLLNEMRDDGKFPG----RAMRVALERMQEMGFIQGANEFL--REMLPDKRIKN---VRY 313
           ++  E+     FP     R + +A  + + +G I+ A + +  R   PD  I N     Y
Sbjct: 545 AIEKEVYGGTVFPSWVILRTLVIANFKCRRLGGIEKAFQEVKARGYNPDLVIFNSMLSMY 604

Query: 314 YEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTT 373
            ++G      E  D+               +    L+  L  ++  ++ + A     W  
Sbjct: 605 AKNGMYSKVTEIFDS---------------IKQSGLSPDLITYN-SLMDMYAKCSESWEA 648

Query: 374 RLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
               K+L   KS +           +P    DV +   ++    + G ++   R+++++ 
Sbjct: 649 E---KILNQLKSSQV----------KP----DVVSYNTVINGFCKQGLIKEAQRILSEMI 691

Query: 434 SDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM---LLYSSLLRTL 490
           +DGM     T   ++  Y       A+L+ F + R +   + +  L    L Y  ++ + 
Sbjct: 692 ADGMAPCVVTYHTLVGGY-------ASLEMFSEAREVINYMIQHNLKPMELTYRRVVDSY 744

Query: 491 TKCKRDFDAINVLEEM 506
            K KR  +A + L E+
Sbjct: 745 CKAKRFEEARSFLSEV 760



 Score = 46.2 bits (108), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 12/125 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y+SL+    KC   ++A  +L ++  S + PDV +++ ++  F  QG  K  Q++ S
Sbjct: 629 LITYNSLMDMYAKCSESWEAEKILNQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILS 688

Query: 540 MVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEG 587
            +  +G+ P    +  L+  Y              Y+   NL P   T   +  S  K  
Sbjct: 689 EMIADGMAPCVVTYHTLVGGYASLEMFSEAREVINYMIQHNLKPMELTYRRVVDSYCKAK 748

Query: 588 RRKEA 592
           R +EA
Sbjct: 749 RFEEA 753


>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
 gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
          Length = 631

 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 74/168 (44%)

Query: 108 LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA 167
           L   L KS++  E  TL  +      +     +  LM  +  +G     L  +   ++  
Sbjct: 306 LLIALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAG 365

Query: 168 KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227
            +  T  YN+++S   K GK  EA+E    +  +G +P+ RTY ++I+ L + G+ + A 
Sbjct: 366 CMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAY 425

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             F  +   +       Y  L+ G   + R DEA  L +EM+ +   P
Sbjct: 426 SFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMP 473



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 62/128 (48%)

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
           NL+     S  LE  L+ + E  Q   +L   +Y+ +M  + K G+  +A+E F  +   
Sbjct: 305 NLLIALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKA 364

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G +P++  Y V+I  L   GK+D ALE+   +    I    + Y I+++      R+++A
Sbjct: 365 GCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKA 424

Query: 262 KSLLNEMR 269
            S    M+
Sbjct: 425 YSFFGMMK 432



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 105/564 (18%), Positives = 209/564 (37%), Gaps = 71/564 (12%)

Query: 74  HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATV-LAKSQRNHELKTLIGDI-SSS 131
            A   A + D+A+ +++ ++   NF    +     A   L + +R  +  TL  D+  + 
Sbjct: 61  QAFGRAGDLDAAMGMLDDMRRG-NFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETC 119

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE-SYNIVMSVYAKTGKNFE 190
                 V +  L+  Y  +GD +  L  +   +Q         S++ ++    K  +  +
Sbjct: 120 DCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATD 179

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A+  F++++  G   +      +I     LG L  A  +   +      R +  Y ILV 
Sbjct: 180 ALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVN 239

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQG---------ANEFLRE 301
                 +  E  S +   R DG         AL  +     IQG         A +    
Sbjct: 240 AHCRAGQMHEVASFMELARHDG--------CALSAVNYNFIIQGFIRCGRLAEATQLFES 291

Query: 302 MLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVV 361
            +  + + +V  Y              N  + +    QL+  L       TL + + +  
Sbjct: 292 TMTKESVPDVFTY--------------NLLIALCKSKQLEEAL-------TLFQEAEQGG 330

Query: 362 SLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGH 421
            +L    + +      K  R  K+ E  ++       + G   D      +++ L + G 
Sbjct: 331 VVLDVFTYSYLMDAFGKAGRAAKALEVFYNM-----QKAGCMPDTVVYNVLISCLGKQGK 385

Query: 422 VELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL-- 479
           V+    L+  +   G+     T  ++ID      + + A   F       G + + K   
Sbjct: 386 VDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFF-------GMMKRRKHSP 438

Query: 480 -MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD-EKIVQKL 537
            ++ Y++LL  L K +R  +A ++ +EM  +  +PD+ TF  L+   A  G  E  +++ 
Sbjct: 439 DVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQS 498

Query: 538 FSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWK 585
             +V+  G  P++Y++  LI  +C+             +   +  PD+ T  +L     +
Sbjct: 499 ARLVKM-GHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSR 557

Query: 586 EGRRKEAAAVEERCEKINDVPSLA 609
            G    A  + +   +    P+LA
Sbjct: 558 RGHTSMAMELLQEMVREGHTPALA 581



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 91/234 (38%), Gaps = 2/234 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           ++   L      D AL ++E + +      +  T + +  VL+   R  +  +  G +  
Sbjct: 375 VLISCLGKQGKVDEALELLEDM-NRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKR 433

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
            K     V +  L+         +     ++E +    +    ++  ++   AK G+  +
Sbjct: 434 RKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMED 493

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A+E   +++  G  PNS  Y  +I      G++D   E+F  +        S  Y ILV 
Sbjct: 494 ALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVL 553

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEM-GFIQGANEFLREML 303
           GF        A  LL EM  +G  P  A    L R   M G ++ A    +EM+
Sbjct: 554 GFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMI 607



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 88/212 (41%), Gaps = 2/212 (0%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTL--HALATVLAKSQRNHELKT 123
           +LD F  ++ + +   A  A   +E   +         T+  + L + L K  +  E   
Sbjct: 332 VLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALE 391

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L+ D++    +     +  ++   S+ G  E   S +   ++R       +YN +++   
Sbjct: 392 LLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLK 451

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           K  +  EA + F ++     +P+  T+  +I+ L   G+++ ALE  + L  M     S 
Sbjct: 452 KLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSY 511

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            Y  L+ GF    + D+   L  +M +   FP
Sbjct: 512 IYNALISGFCRSGQVDKGYELFQDMIECSCFP 543


>gi|222619024|gb|EEE55156.1| hypothetical protein OsJ_02962 [Oryza sativa Japonica Group]
          Length = 428

 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 94/205 (45%), Gaps = 1/205 (0%)

Query: 74  HALRSAPNADSALSIMEALKSNPNFSH-NQSTLHALATVLAKSQRNHELKTLIGDISSSK 132
           + L  A  +D+A+ I +A++   N    +  + + +   L +  R  E + L  ++ ++ 
Sbjct: 14  NVLVKAHCSDAAVPIDDAVRVFRNIPKPDACSYNTVIDGLCRRGRLPEARDLFAEMIANG 73

Query: 133 FLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV 192
                V +  L+ W +     +  L  ++E  +R  + +  +Y+ ++    K G+   AV
Sbjct: 74  TAPTVVTYTTLIHWLAREACFDDALKLFDEMARRGIMPNVVTYSSLIDGLCKGGRAASAV 133

Query: 193 ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
           E   +++ E  +PN+ TY+ +I+ L   G L  A+E+   + L   K  +  +  L+ G 
Sbjct: 134 ELLDRMVKERKLPNTITYSSVIDGLCKEGCLGQAMEILDRMRLQGRKPDAGLFGKLIVGL 193

Query: 253 VGVERFDEAKSLLNEMRDDGKFPGR 277
               R  EA + L+EM   G  P R
Sbjct: 194 CDAGRALEASNYLDEMNFAGIRPNR 218



 Score = 46.2 bits (108), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 10/160 (6%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           D  +   ++  L R G +     L A++ ++G      T   +I +       D ALK F
Sbjct: 42  DACSYNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLF 101

Query: 465 HDDRTLCGPISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL 521
            +       +++  +M   + YSSL+  L K  R   A+ +L+ M+    +P+  T+S +
Sbjct: 102 DE-------MARRGIMPNVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSV 154

Query: 522 MYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           +     +G      ++   +R  G +PDA +F  LI   C
Sbjct: 155 IDGLCKEGCLGQAMEILDRMRLQGRKPDAGLFGKLIVGLC 194



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 12/144 (8%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++++  L +  R  +A ++  EMI +G  P V T++ L++  A +       KLF  + 
Sbjct: 46  YNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMA 105

Query: 543 QNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRK 590
           + G+ P+   +  LI   CK             +     +P+  T   +   L KEG   
Sbjct: 106 RRGIMPNVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCLG 165

Query: 591 EAAAVEERCEKINDVPSLALRGHI 614
           +A  + +R       P   L G +
Sbjct: 166 QAMEILDRMRLQGRKPDAGLFGKL 189


>gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 721

 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 97/480 (20%), Positives = 184/480 (38%), Gaps = 38/480 (7%)

Query: 106 HALATVLAKS-QRNHELKTLIGDISSSKFLNVSVNFM-----NLMQWYSTSGDLELVLST 159
           H   ++L  S  R  E+   IG +   K    S+ F      +L+  Y   G+       
Sbjct: 227 HITYSILIDSFCRRGEMDNAIGFLD--KMTKASIEFTVYPYNSLINGYCKLGNASAAKYY 284

Query: 160 WNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219
           ++E   +    +  +Y  ++S Y   G+  +A + + ++  +G  PN+ T+T +I  L  
Sbjct: 285 FDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCR 344

Query: 220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-A 278
              +  A+ +F  +   +I  +   Y +++EG        EA  LL+EM   G  P    
Sbjct: 345 ANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYT 404

Query: 279 MRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED--GSDDDEDENDDNNSGVR--- 333
            R  +  +  +G +  A EF+ ++  D    N   Y         E    D  S  R   
Sbjct: 405 YRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGRFKDAVSACRVMV 464

Query: 334 --------IAYGVQLKPWL---DPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRH 382
                   + Y + +       D +AL   L E       L  DA  ++T      + RH
Sbjct: 465 ERGVAMDLVCYAILIDGTAREHDTRALFGLLKEMHNH--GLRPDA-VIYTNM----IDRH 517

Query: 383 FKSPETAWHFFCW-VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPF 441
            K+      F  W +    G   +V     ++  L + G ++  + L  +     +    
Sbjct: 518 SKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGLMDKAELLSKETLVSDVTPNH 577

Query: 442 STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAIN 501
            T    +D        + A++  H    L G ++     + Y+ L+R   +  +  +A  
Sbjct: 578 ITYGCFLDHLTRGGNMEKAVQLHH--AMLKGFLAT---TVSYNILIRGFCRLGKIEEATK 632

Query: 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           +L  M  + I+PD  T+S ++Y    + + +   KL+  +   G++PD   +  L+   C
Sbjct: 633 LLHGMTDNDILPDYITYSTIIYEQCKRSNLQEAIKLWHTMLDKGLKPDTLAYSFLVHGCC 692



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 81/174 (46%), Gaps = 4/174 (2%)

Query: 105 LHALATVLAKSQRNHELKTLIG---DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWN 161
           L   A ++  + R H+ + L G   ++ +      +V + N++  +S +G+L+     W+
Sbjct: 472 LVCYAILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWD 531

Query: 162 EYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG 221
                  L +  +Y  +++   K G   +A    ++ +     PN  TY   ++HL   G
Sbjct: 532 IMVDEGCLPNVVTYTALINGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGG 591

Query: 222 KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            ++ A+++  A+ L     T+  Y IL+ GF  + + +EA  LL+ M D+   P
Sbjct: 592 NMEKAVQLHHAM-LKGFLATTVSYNILIRGFCRLGKIEEATKLLHGMTDNDILP 644



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 95/507 (18%), Positives = 186/507 (36%), Gaps = 63/507 (12%)

Query: 109 ATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAK 168
           A V+    + +E + L  ++         + +  L+  +   G+++  +   ++  + + 
Sbjct: 199 ANVVTYYGKFNEAELLFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASI 258

Query: 169 LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALE 228
             +   YN +++ Y K G    A   F ++ID+G  P   TYT +I    N G+   A +
Sbjct: 259 EFTVYPYNSLINGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFK 318

Query: 229 VFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQ 287
           V++ +    I   +  +  ++ G        EA  L  EM++    P      V +E   
Sbjct: 319 VYNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHC 378

Query: 288 EMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPK 347
             G I  A   L EM+    + +   Y                          +P +   
Sbjct: 379 RSGNISEAFHLLDEMVGKGFVPDTYTY--------------------------RPLISGL 412

Query: 348 ALANTLDEWSPEVVSL------LADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPG 401
                + E    V  L      L +  +       CK  R FK   +A    C V  + G
Sbjct: 413 CSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGR-FKDAVSA----CRVMVERG 467

Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY---GISKKAD 458
              D+     ++   AR      +  L+ ++ + G+R        +ID +   G  K+A 
Sbjct: 468 VAMDLVCYAILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAF 527

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
                  D+  L   ++       Y++L+  L K      A  + +E + S + P+  T+
Sbjct: 528 GLWDIMVDEGCLPNVVT-------YTALINGLCKAGLMDKAELLSKETLVSDVTPNHITY 580

Query: 519 SGLMYHFALQGD-EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LS 565
              + H    G+ EK VQ   +M++  G       + +LI+ +C+             ++
Sbjct: 581 GCFLDHLTRGGNMEKAVQLHHAMLK--GFLATTVSYNILIRGFCRLGKIEEATKLLHGMT 638

Query: 566 NSNLMPDAATKELLKKSLWKEGRRKEA 592
           +++++PD  T   +     K    +EA
Sbjct: 639 DNDILPDYITYSTIIYEQCKRSNLQEA 665



 Score = 40.4 bits (93), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 31/147 (21%), Positives = 66/147 (44%), Gaps = 6/147 (4%)

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
           +TL+ D++ +      + +   +   +  G++E  +   +    +  L +T SYNI++  
Sbjct: 567 ETLVSDVTPNH-----ITYGCFLDHLTRGGNMEKAVQ-LHHAMLKGFLATTVSYNILIRG 620

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
           + + GK  EA +    + D   +P+  TY+ +I        L  A++++  +    +K  
Sbjct: 621 FCRLGKIEEATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQEAIKLWHTMLDKGLKPD 680

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEM 268
           +  Y  LV G       ++A  L +EM
Sbjct: 681 TLAYSFLVHGCCIAGELEKAFELRDEM 707


>gi|297736961|emb|CBI26162.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 1/144 (0%)

Query: 160 WNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219
           W E  Q+  L +  +YN ++  Y K G   EA + +R++ D+G    + +Y VMI+ L +
Sbjct: 390 WFEMIQKGFLPNEYTYNAMIHGYFKIGNLEEAWKMYREMCDKGYGEKTVSYNVMIKGLCS 449

Query: 220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM 279
            GK+  A ++F  +    I R    Y  LV GF    +  E  +LL E+ D G  P  A 
Sbjct: 450 HGKIKEAHDLFEEMSHKGILRNHITYNALVRGFCKEGKIVEGANLLYELLDQGIQPSAAS 509

Query: 280 RVAL-ERMQEMGFIQGANEFLREM 302
              L +++ + G +Q A     +M
Sbjct: 510 YAPLIDKLCQEGDMQNAKILWDDM 533



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 96/525 (18%), Positives = 181/525 (34%), Gaps = 106/525 (20%)

Query: 58  LSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR 117
           LS   +   LDP  ++H +    NA  +L     L S   FS + S+ + L   L ++  
Sbjct: 116 LSDFPSFNFLDPTFLSHFVEHQKNALISLRFFHWLSSQSGFSPDSSSCNVLFDALVEA-- 173

Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI 177
                   G  +++K    S NF                           K  S E+Y  
Sbjct: 174 --------GACNAAKSFLDSTNF-------------------------NPKPASLEAY-- 198

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
            +    K G   EA+  F Q+   G   +  T+  ++   V  G++D   E++  +    
Sbjct: 199 -IRCLCKGGLVEEAISVFGQLKGIGVCASIATWNSVLRGSVRAGRIDFVWELYGEMVESS 257

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQG--- 294
           +         LV+ F    R  +  +LL  + +DG  P  A   A  ++   GF +    
Sbjct: 258 VVADVHTVGYLVQAFCDENRISDGHNLLRRVLEDGVVPRNA---AFNKLIS-GFCKDKAY 313

Query: 295 --ANEFLREMLPDKRIKNVRYYED-------GSDDDE------DENDDNNSGVRIAYGVQ 339
              ++ L  M+   R  ++  Y++       G    E      D  D   +  R+ Y   
Sbjct: 314 GRVSDLLHSMIARNRAPDIFTYQEVVNGLCKGGKGPEGFRVFKDLKDRGYAPDRVMYTTM 373

Query: 340 LKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFK--SPETAWHFFCWVA 397
           +      K L +    W   +       ++ +       +  +FK  + E AW  +  + 
Sbjct: 374 IHGLCRMKWLGDARKLWFEMIQKGFLPNEYTYNAM----IHGYFKIGNLEEAWKMYREMC 429

Query: 398 YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA 457
              GY     +   M+  L  HG ++    L  ++   G+                    
Sbjct: 430 -DKGYGEKTVSYNVMIKGLCSHGKIKEAHDLFEEMSHKGI-------------------- 468

Query: 458 DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
                               +  + Y++L+R   K  +  +  N+L E++  GI P   +
Sbjct: 469 -------------------LRNHITYNALVRGFCKEGKIVEGANLLYELLDQGIQPSAAS 509

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           ++ L+     +GD +  + L+  ++  G+EP       +I  +CK
Sbjct: 510 YAPLIDKLCQEGDMQNAKILWDDMQNRGMEPAVCTHDFMITGFCK 554


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 84/395 (21%), Positives = 157/395 (39%), Gaps = 46/395 (11%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLL-STESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
           ++  + +SG          E  +R K+     +YN +++ + K GK FEA E + +++  
Sbjct: 261 MINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPR 320

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL---ILVEGFVGVERF 258
           G IP++ TY+ MI+      +LD+A  +F    LM  K  S   +    L+ G+   +R 
Sbjct: 321 GIIPSTITYSSMIDGFCKQNRLDAAEHMFY---LMATKGCSPDIITFNTLIAGYCRAKRV 377

Query: 259 DEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYE-- 315
           D+   LL+EM + G          L     ++G +  A + L+EM+      NV      
Sbjct: 378 DDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTL 437

Query: 316 -DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVS-------LLADA 367
            DG  D+    D     + +   +Q K  +D  A ++  +   P+V +       L+ + 
Sbjct: 438 LDGLCDNGKLKD----ALEMFKAMQ-KSKMDIDA-SHPFNGVEPDVQTYNILISGLINEG 491

Query: 368 KFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDR 427
           KF+    L           E   H         G   D      ++  L +   ++   +
Sbjct: 492 KFLEAEELY----------EEMPH--------RGIVPDTITYNSVIHGLCKQSRLDEATQ 533

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLL 487
           +   + S        T   +I+ Y  + + D  L+ F +     G        + Y +L+
Sbjct: 534 MFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCE----MGRRGIVANAITYITLI 589

Query: 488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
               K      A+++ +EM+ SG+ PD  T   ++
Sbjct: 590 HGFRKVGNINGALDIFQEMMASGVYPDTITIRNML 624



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 105/519 (20%), Positives = 187/519 (36%), Gaps = 93/519 (17%)

Query: 119 HELKTL------IGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
           HE+K L       GD+  S+ L   ++F  LM      G L++V+S   +   R    + 
Sbjct: 54  HEIKGLEDAIDLFGDMVRSRPLPSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVPCNA 113

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            S+ I+M  +    K   A+ TF ++   G  P   T++ ++  L    ++  AL++F  
Sbjct: 114 YSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQ 173

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFI 292
           +     K     +  L+ G     R  EA +L                  L+RM E G  
Sbjct: 174 M----CKPNVVTFTTLMNGLCREGRVVEAVAL------------------LDRMLEDGL- 210

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
              N+     + D   K                 D  S + +   ++    + P  +   
Sbjct: 211 -QPNQITYGTIVDGMCKM---------------GDTVSALNLLRKMEEVSHIKPNVVIWP 254

Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFK-SPETAWHFFCWVAYQPGYTHDVYALEK 411
           L+  +  +    +  ++    +L+ ++L   K SP                  DV     
Sbjct: 255 LERRTCMINGFCSSGRWSEAQQLLQEMLERKKISP------------------DVVTYNA 296

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL- 470
           ++    + G     + L  ++   G+     T   +ID +    + DAA   F+   T  
Sbjct: 297 LINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKG 356

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
           C P      ++ +++L+    + KR  D I +L EM  +G+V +  T++ L++ F   GD
Sbjct: 357 CSPD-----IITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGD 411

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNL--------- 569
               Q L   +  +GV P+      L+   C            K +  S +         
Sbjct: 412 LNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFN 471

Query: 570 --MPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
              PD  T  +L   L  EG+  EA  + E       VP
Sbjct: 472 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVP 510



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 91/421 (21%), Positives = 162/421 (38%), Gaps = 74/421 (17%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++  +M+   + G+  EAV    +++++G  PN  TY  +++ +  +G   SAL +   +
Sbjct: 181 TFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKM 240

Query: 234 -------------PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF-PGRAM 279
                        PL R  RT      ++ GF    R+ EA+ LL EM +  K  P    
Sbjct: 241 EEVSHIKPNVVIWPLER--RTC-----MINGFCSSGRWSEAQQLLQEMLERKKISPDVVT 293

Query: 280 RVALER--MQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYG 337
             AL    ++E  F + A E   EMLP   I +   Y    D    +N       R+   
Sbjct: 294 YNALINAFVKEGKFFE-AEELYDEMLPRGIIPSTITYSSMIDGFCKQN-------RLDAA 345

Query: 338 VQLKPWLDPKALANTLDEWSPEVVSL-LADAKFVWTTRL--VCKVLRHFKSP-------- 386
             +   +  K         SP++++     A +    R+    K+L              
Sbjct: 346 EHMFYLMATKG-------CSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTIT 398

Query: 387 -ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHG---HVELVDRLIAKLRSDGMRLPFS 442
             T  H FC V        D+ A + +L  +   G   +V   + L+  L  +G      
Sbjct: 399 YTTLIHGFCQVG-------DLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNG------ 445

Query: 443 TIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAIN 501
            ++  ++ +   +K+   + A H       P +  +  +  Y+ L+  L    +  +A  
Sbjct: 446 KLKDALEMFKAMQKSKMDIDASH-------PFNGVEPDVQTYNILISGLINEGKFLEAEE 498

Query: 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           + EEM   GIVPD  T++ +++    Q       ++F  +      P+   F  LI  YC
Sbjct: 499 LYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYC 558

Query: 562 K 562
           K
Sbjct: 559 K 559



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/221 (20%), Positives = 91/221 (41%), Gaps = 18/221 (8%)

Query: 59  SSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRN 118
           S++    ++D F   + L +A +       M  L +    S +  T + L     +++R 
Sbjct: 325 STITYSSMIDGFCKQNRLDAAEH-------MFYLMATKGCSPDIITFNTLIAGYCRAKRV 377

Query: 119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV 178
            +   L+ +++ +  +  ++ +  L+  +   GDL        E        +  + N +
Sbjct: 378 DDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTL 437

Query: 179 MSVYAKTGKNFEAVETFRQV------ID-----EGAIPNSRTYTVMIEHLVNLGKLDSAL 227
           +      GK  +A+E F+ +      ID      G  P+ +TY ++I  L+N GK   A 
Sbjct: 438 LDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAE 497

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           E++  +P   I   +  Y  ++ G     R DEA  + + M
Sbjct: 498 ELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSM 538


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 80/178 (44%), Gaps = 1/178 (0%)

Query: 138  VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
            V +  L++ +     +E  +  + E  QR  + +T +YNI++    + G    A E F++
Sbjct: 1011 VTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKE 1070

Query: 198  VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
            ++ +G  PN  TY  +++ L   GKL+ A+ VF  L   +++ T   Y I++EG     +
Sbjct: 1071 MVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 1130

Query: 258  FDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
             ++   L   +   G  P   A    +      G  + A+   +EM  D  + N   Y
Sbjct: 1131 VEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCY 1188



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 100/553 (18%), Positives = 215/553 (38%), Gaps = 47/553 (8%)

Query: 67  LDPFIVTHA-----LRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHEL 121
           +DP IVT++     L      D A  + + + S    + +  + + L     K++R  + 
Sbjct: 394 IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLA-DVVSYNTLINGFCKAKRVEDG 452

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
             L  ++S    ++ +V +  L+Q +  +GD++     +++           +YNI++  
Sbjct: 453 MKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGG 512

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
               G+  +A+  F  +       +  TYT +I  +   GK++ A  +F +L L  +K  
Sbjct: 513 LCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPD 572

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNE------MRDDGKFPGRAMRVALERMQEMGFIQGA 295
              Y  ++ G        E ++L  +      M++D       + ++ E +++M     A
Sbjct: 573 IVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSCGYA 632

Query: 296 NEFLREM---LPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
              L+++   +  K +  +R +   +  D  E    N       G+      D  AL   
Sbjct: 633 PSLLKDIKSGVCKKALSLLRAFSGKTSYDYREKLSRN-------GLSELKLDDAVALFGE 685

Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
           + +  P   S++  +K +     + K        E   +         G  H+ Y    +
Sbjct: 686 MVKSRP-FPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNL--------GIPHNHYTYSIL 736

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
           +    R   + L   ++ K+   G      T+  +++ Y  SK+   A+ A  D   + G
Sbjct: 737 INCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAV-ALVDQMFVTG 795

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
                   + +++L+  L    +  +A+ +++ M+  G  PD+ T+  ++     +GD  
Sbjct: 796 YQPN---TVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTD 852

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLK 580
           +   L + + Q  +EP   ++  +I   CKY            +    + P+  T   L 
Sbjct: 853 LAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLI 912

Query: 581 KSLWKEGRRKEAA 593
             L   GR  +A+
Sbjct: 913 SCLCNYGRWSDAS 925



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 18/172 (10%)

Query: 398 YQPGYTHDVYALEKMLTILARHGH----VELVDRLIAKLRSDGMRLPFSTIRLIIDFYGI 453
           +  GY  +      ++  L  H      + L+DR++AK    G +    T  ++++  G+
Sbjct: 792 FVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAK----GCQPDLVTYGVVVN--GL 845

Query: 454 SKKADAALKAFHDDRTLCGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSG 510
            K+ D  L AF+    L   + + KL   +L+Y++++  L K K   DA+N+ +EM   G
Sbjct: 846 CKRGDTDL-AFN----LLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKG 900

Query: 511 IVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           I P+V T+S L+      G      +L S + +  + PD + F  LI A+ K
Sbjct: 901 IRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 952



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 82/207 (39%), Gaps = 16/207 (7%)

Query: 401  GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
            G   D+     ++  L + G  +L   L+ K+    +         IID     K  D A
Sbjct: 830  GCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDA 889

Query: 461  LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
            L  F +  T          ++ YSSL+  L    R  DA  +L +MI   I PDV TFS 
Sbjct: 890  LNLFKEMETK----GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSA 945

Query: 521  LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSN 568
            L+  F  +G     +KL+  + +  ++P    +  LI  +C            +++ + +
Sbjct: 946  LIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKH 1005

Query: 569  LMPDAATKELLKKSLWKEGRRKEAAAV 595
              PD  T   L K   K  R +E   V
Sbjct: 1006 CFPDVVTYNTLIKGFCKYKRVEEGMEV 1032



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 91/431 (21%), Positives = 162/431 (37%), Gaps = 60/431 (13%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y  +++    + +  +A      +I +   PN  TY+ +++  V  GK+  A E+F  +
Sbjct: 330 TYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEM 389

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFI 292
             M I      Y  L+ G    +R DEA  + + M   G      +    +    +   +
Sbjct: 390 VRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRV 449

Query: 293 QGANEFLREMLPDKRIKNVRYYE---DG--SDDDEDENDDNNSGVRIAYGVQLKPWLDPK 347
           +   +  REM     + N   Y     G     D D+  +  S +   +G+    W    
Sbjct: 450 EDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDF-FGISPDIWTYNI 508

Query: 348 ALANTLDEWSPE-VVSLLADAK--------FVWTT--RLVCKVLRHFKSPETAWHFFCWV 396
            L    D    E  + +  D +          +TT  R +CK  +     E AW  FC +
Sbjct: 509 LLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGK----VEEAWSLFCSL 564

Query: 397 AYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI------------ 444
           + + G   D+     M++ L   G +  V+ L  K++ +G+     T+            
Sbjct: 565 SLK-GLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELI 623

Query: 445 ----------RLIIDF-YGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLL--RTLT 491
                      L+ D   G+ KKA + L+AF             K    Y   L    L+
Sbjct: 624 KKMLSCGYAPSLLKDIKSGVCKKALSLLRAFSG-----------KTSYDYREKLSRNGLS 672

Query: 492 KCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAY 551
           + K D DA+ +  EM+ S   P +  FS L+   A      +V  L   ++  G+  + Y
Sbjct: 673 ELKLD-DAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHY 731

Query: 552 MFKVLIQAYCK 562
            + +LI  +C+
Sbjct: 732 TYSILINCFCR 742



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 87/202 (43%), Gaps = 20/202 (9%)

Query: 405  DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
            DV+    ++    + G +   ++L  ++    +     T   +I+ + +  + D A + F
Sbjct: 939  DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 998

Query: 465  HDDRTLCGPISK--FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
                     +SK  F  ++ Y++L++   K KR  + + V  EM   G+V +  T++ L+
Sbjct: 999  E------FMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILI 1052

Query: 523  YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLM 570
                  GD  + Q++F  +  +GV P+   +  L+   CK            YL  S + 
Sbjct: 1053 QGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKME 1112

Query: 571  PDAATKELLKKSLWKEGRRKEA 592
            P   T  ++ + + K G+ ++ 
Sbjct: 1113 PTIYTYNIMIEGMCKAGKVEDG 1134



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 85/204 (41%), Gaps = 1/204 (0%)

Query: 72   VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
            +   L    + D AL++ + +++      N  T  +L + L    R  +   L+ D+   
Sbjct: 876  IIDGLCKYKHMDDALNLFKEMETK-GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIER 934

Query: 132  KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
            K       F  L+  +   G L      ++E  +R+   S  +Y+ +++ +    +  EA
Sbjct: 935  KINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEA 994

Query: 192  VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
             + F  ++ +   P+  TY  +I+      +++  +EVF  +    +   +  Y IL++G
Sbjct: 995  KQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQG 1054

Query: 252  FVGVERFDEAKSLLNEMRDDGKFP 275
                   D A+ +  EM  DG  P
Sbjct: 1055 LFQAGDCDMAQEIFKEMVSDGVPP 1078



 Score = 46.6 bits (109), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 6/162 (3%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           GY  D   +  ++    R   V     L+ K+   G +        IID    +K+ + A
Sbjct: 253 GYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDA 312

Query: 461 LKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
              F + +R    P      ++ Y++L+  L    R  DA  +L +MI   I P+V T+S
Sbjct: 313 FDFFKEIERKGIRPN-----VVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYS 367

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
            L+  F   G     ++LF  + +  ++PD   +  LI   C
Sbjct: 368 ALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLC 409



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 46/95 (48%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN ++    KT +  +A + F+++  +G  PN  TYT ++  L N  +   A  + S +
Sbjct: 295 AYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDM 354

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
              +I      Y  L++ FV   +  EAK L  EM
Sbjct: 355 IKKKITPNVITYSALLDAFVKNGKVLEAKELFEEM 389



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 12/166 (7%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID-FYGISKKADA 459
           GY  D+ A   ++  L +   V        ++   G+R    T   +++     S+ +DA
Sbjct: 288 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 347

Query: 460 ALKAFHDDRTLCGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
           A       R L   I K K+   ++ YS+LL    K  +  +A  + EEM+   I PD+ 
Sbjct: 348 A-------RLLSDMIKK-KITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIV 399

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           T+S L+    L        ++F ++   G   D   +  LI  +CK
Sbjct: 400 TYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCK 445



 Score = 42.4 bits (98), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 53/118 (44%)

Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
           GD +L  +  N+  Q         YN ++    K     +A+  F+++  +G  PN  TY
Sbjct: 849 GDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTY 908

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           + +I  L N G+   A  + S +   +I      +  L++ FV   +  EA+ L +EM
Sbjct: 909 SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEM 966


>gi|302767746|ref|XP_002967293.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
 gi|300165284|gb|EFJ31892.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
          Length = 321

 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 52/102 (50%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN+++  + K  K   A+E  +++   G  PN  TY   +  L   GK+D AL +F A+
Sbjct: 82  TYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAM 141

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              +I+     Y  L++G     +  EA SLL+EM + G  P
Sbjct: 142 TEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVP 183



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 34/80 (42%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           +  L+  L K  R  DA  ++E M   G  P+   F+G+M     +G           +R
Sbjct: 13  FGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGRSAEAYGFIETMR 72

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
             GV P    + +LI  +CK
Sbjct: 73  SMGVSPTIVTYNLLIDGFCK 92


>gi|255660970|gb|ACU25654.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 350

 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 65/149 (43%)

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           +  S F+  S+ +  L+  +  +G ++  L       Q+  +L   +Y+ +++   K   
Sbjct: 59  MKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEAN 118

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
              AV     +I  G  PN   Y  +I  LV   K + A+ VF  +  M    T   Y  
Sbjct: 119 LDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNT 178

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
           L+ GF   + F EA +L+ E+ D G  PG
Sbjct: 179 LINGFCKNKMFGEAYNLVKELLDKGLDPG 207



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/216 (20%), Positives = 91/216 (42%), Gaps = 18/216 (8%)

Query: 396 VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455
           +A Q G   D +A   M+  L +  +++    ++  +   G +        +I+    + 
Sbjct: 93  MAEQKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGAS 152

Query: 456 KADAALKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
           K + A++ F +  T+ C P      ++ Y++L+    K K   +A N+++E++  G+ P 
Sbjct: 153 KFEDAIRVFREMGTMHCSPT-----IITYNTLINGFCKNKMFGEAYNLVKELLDKGLDPG 207

Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY----------- 563
           V T+S LM         +   +L++ V   G +PD  M  +LI   C             
Sbjct: 208 VITYSMLMEGLCFDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYF 267

Query: 564 -LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
            ++     P+  +   L +  +K+G  + A  +  R
Sbjct: 268 DMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWAR 303



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/129 (22%), Positives = 59/129 (45%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           F  +M+    +G ++ V+S W   ++   +  + +Y I++  + K G   +++       
Sbjct: 36  FNTMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAE 95

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
            +G + ++  Y+ MI  L     LD A+ V + +     K     Y  L+ G VG  +F+
Sbjct: 96  QKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFE 155

Query: 260 EAKSLLNEM 268
           +A  +  EM
Sbjct: 156 DAIRVFREM 164



 Score = 40.0 bits (92), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 50/95 (52%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN +++ + K     EA    ++++D+G  P   TY++++E L    K++ AL++++ +
Sbjct: 175 TYNTLINGFCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMEGLCFDHKVERALQLWNQV 234

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
                K   + + IL+ G   V +   A SL  +M
Sbjct: 235 TSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDM 269


>gi|224063295|ref|XP_002301082.1| predicted protein [Populus trichocarpa]
 gi|222842808|gb|EEE80355.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 109/239 (45%), Gaps = 4/239 (1%)

Query: 63  NDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELK 122
           N  + + FI  H    + + +SA ++++ +K +     N  T   L   L +S R  E  
Sbjct: 189 NTCIFNIFIKYHC--KSGDLESAFAVVKEMKKSSISYPNLITYSTLMDGLCESGRLKEAI 246

Query: 123 TLIGD-ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
            L  + +S  + L  ++ +  L+  +S  G ++         +      +  +Y+ +MS 
Sbjct: 247 ELFEEMVSKDQILPDALTYNVLINGFSCWGKVDRAKKIMEFMKSNGCSPNVFNYSALMSG 306

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
           + K G+  EA++ F ++   G   ++  YT++I +    G++D A+ +   +   + K  
Sbjct: 307 FCKEGRLEEAMDAFEEMKIFGLKQDTVGYTILINYFCRFGRIDEAMALLEEMKETKCKAD 366

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA-MRVALERMQEMGFIQGANEFL 299
                +L+ GF G  R +EA  +LN +  +G +  +A  R+ L  + + G +  A E L
Sbjct: 367 IVTVNVLLRGFCGEGRTEEALGMLNRLSSEGIYLNKASYRIVLNSLCQKGDLDKALELL 425



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 5/157 (3%)

Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI-RLIIDFYGISKKADAALKAFHD 466
           A+   L +L     V+L+   +  L  D M  P + I  + I ++  S   ++A     +
Sbjct: 156 AISTCLNLLVESKQVDLLRGFLLDLNKDHMLKPNTCIFNIFIKYHCKSGDLESAFAVVKE 215

Query: 467 DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSG-IVPDVQTFSGLMYHF 525
            +     IS +  ++ YS+L+  L +  R  +AI + EEM+    I+PD  T++ L+  F
Sbjct: 216 MKK--SSIS-YPNLITYSTLMDGLCESGRLKEAIELFEEMVSKDQILPDALTYNVLINGF 272

Query: 526 ALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           +  G     +K+   ++ NG  P+ + +  L+  +CK
Sbjct: 273 SCWGKVDRAKKIMEFMKSNGCSPNVFNYSALMSGFCK 309



 Score = 40.4 bits (93), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 66/171 (38%), Gaps = 3/171 (1%)

Query: 89  MEALKSNPNFSHNQSTLH--ALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQW 146
           M+A +    F   Q T+    L     +  R  E   L+ ++  +K     V    L++ 
Sbjct: 317 MDAFEEMKIFGLKQDTVGYTILINYFCRFGRIDEAMALLEEMKETKCKADIVTVNVLLRG 376

Query: 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206
           +   G  E  L   N        L+  SY IV++   + G   +A+E     +  G +P+
Sbjct: 377 FCGEGRTEEALGMLNRLSSEGIYLNKASYRIVLNSLCQKGDLDKALELLGLTLSRGFVPH 436

Query: 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
             T   ++  L   G  D A+     L  M  K     + +LVE FV  ER
Sbjct: 437 HATSNELLVGLCKAGMADDAVVALYGLAEMGFKPEQDSWALLVE-FVCRER 486


>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 907

 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 97/457 (21%), Positives = 174/457 (38%), Gaps = 62/457 (13%)

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
           ++L+ ++ + K     V + +LM  Y + G +   L  ++E   +  + S  ++  ++S 
Sbjct: 457 ESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSG 516

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
             + G   +AV+ F ++ +    PN  TY VMIE     G +  A E  + +    I   
Sbjct: 517 LFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPD 576

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLRE 301
           +  Y  L+ G     +  EAK  +     DG   G      L  +   G + G   F RE
Sbjct: 577 TYSYRPLIHGLCLTGQASEAKVFV-----DGLHKGNC---ELNEICYTGLLHG---FCRE 625

Query: 302 MLPDKRIKNVRYYED----GSDDDEDENDDNNSGVRIAYGVQLKPWL---DPKALANTLD 354
               K  + +   +D    G D D            + YGV +   L   D K     L 
Sbjct: 626 ---GKLEEALSVCQDMGLRGVDLD-----------LVCYGVLIDGSLKHKDRKVFLGLLK 671

Query: 355 EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCW-VAYQPGYTHDVYALEKML 413
           E        L     ++T+ +  K     K+ +    F  W +    G   +      ++
Sbjct: 672 EMHDRG---LKPDDVIYTSMIDAKS----KTGDFKEAFGIWDLMINEGCVPNEVTYTAVI 724

Query: 414 TILARHGHVELVDRLIAKLRSDGMRLPFST-----IRLIIDFYGISKKA----DAALKAF 464
             L + G V   + L +K+R  G  +P        + ++    G  KKA    +A LK  
Sbjct: 725 NGLCKAGFVNEAEILCSKMRP-GNSVPNQVTYGCFLDILTKGVGDMKKAVELHNAILKGL 783

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
             +               Y+ L+R   +  R  +A  ++  MI  G+ PD  T++ ++  
Sbjct: 784 LANTA------------TYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISE 831

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
              + D K   +L++ + + G+ PD   +  LI   C
Sbjct: 832 LCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCC 868



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 78/182 (42%), Gaps = 2/182 (1%)

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS-GDL 153
           N     N+ T  A+   L K+   +E + L   +     +   V +   +   +   GD+
Sbjct: 710 NEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTYGCFLDILTKGVGDM 769

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           +  +   N    +  L +T +YN+++  + + G+  EA E   ++I +G  P+  TYT M
Sbjct: 770 KKAVELHNAI-LKGLLANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTM 828

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           I  L     +  A+E+++++    I+     Y  L+ G        +A  L NEM   G 
Sbjct: 829 ISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGL 888

Query: 274 FP 275
            P
Sbjct: 889 KP 890



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 63/136 (46%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           + +L+  +   GD+    S   E   +    +  +Y  +M  Y   GK  +A+  + ++ 
Sbjct: 440 YNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMT 499

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
            +G +P+  T+T ++  L   G +  A+++F+ +    +K     Y +++EG+       
Sbjct: 500 GKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMS 559

Query: 260 EAKSLLNEMRDDGKFP 275
           +A   LNEM + G  P
Sbjct: 560 KAFEFLNEMIEKGIVP 575



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 96/244 (39%), Gaps = 2/244 (0%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           +   LR     + AL++++ + +    S N    +AL   L K +   E + L   +   
Sbjct: 338 LVEGLRKRGKVEEALNLVKRV-AEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKI 396

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
                 V +  L+  +   G L+  LS   E        S   YN +++ + K G    A
Sbjct: 397 GLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAA 456

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
                ++I++   P   TYT ++    + GK++ AL ++  +    I  +   +  L+ G
Sbjct: 457 ESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSG 516

Query: 252 FVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKN 310
                   +A  L  EM +    P R    V +E   E G +  A EFL EM+    + +
Sbjct: 517 LFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPD 576

Query: 311 VRYY 314
              Y
Sbjct: 577 TYSY 580



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+SL+       +   A+ +  EM   GIVP + TF+ L+      G  +   KLF+ + 
Sbjct: 475 YTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMA 534

Query: 543 QNGVEPDAYMFKVLIQAYCKYLSNS------------NLMPDAATKELLKKSLWKEGRRK 590
           +  V+P+   + V+I+ YC+  + S             ++PD  +   L   L   G+  
Sbjct: 535 EWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQAS 594

Query: 591 EA 592
           EA
Sbjct: 595 EA 596


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 1/161 (0%)

Query: 133 FLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV 192
           FL  +  +  L+  +   G +E V +  NE + R     T +YNI++S + +  +  +A 
Sbjct: 439 FLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAA 498

Query: 193 ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
               +++D+G  P+  TY +++      G L +AL +   +           Y +L++G+
Sbjct: 499 RLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGY 558

Query: 253 VGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFI 292
               + ++A  LLNEM + G  P R    +  E M E GF+
Sbjct: 559 CRKGKLEDANGLLNEMLEKGLIPNRTTYEIIKEEMMEKGFL 599



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 101/235 (42%), Gaps = 2/235 (0%)

Query: 81  NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNF 140
           N  +AL + E ++S         T ++L   L    + +E K L+ ++ SS      + +
Sbjct: 318 NLSAALKVFEEMQSQ-GLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITY 376

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
             L+  Y     LE     ++   ++    +  ++N ++  Y K GK  EA    + +++
Sbjct: 377 NALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLE 436

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
           +G +PN+ TY  +I      GK++    + + +    +K  +  Y IL+  +   +   +
Sbjct: 437 KGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKK 496

Query: 261 AKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
           A  L++EM D G  P      + L      G ++ A    ++M  + R  NV  Y
Sbjct: 497 AARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTY 551



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 93/202 (46%), Gaps = 20/202 (9%)

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
           + R G +   D ++ ++  + +     T  ++ID +   +   AALK F + ++      
Sbjct: 278 MGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQS-----Q 332

Query: 476 KFK-LMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
             K  ++ Y+SL+  L    +  +A  +L+EM+ S + P+V T++ L+  +  +   +  
Sbjct: 333 GLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEA 392

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKS 582
           ++LF  + + G+ P+   F  L+  YCK+            +     +P+A+T   L   
Sbjct: 393 RELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVG 452

Query: 583 LWKEGRRKEAAAV--EERCEKI 602
             +EG+ +E   +  E +C  +
Sbjct: 453 FCREGKMEEVKNLLNEMQCRGV 474



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 174 SYNIVMSVYAK---TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           +YN ++  Y K    GK ++A    +++++    PNS T+ V+I+       L +AL+VF
Sbjct: 267 TYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVF 326

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
             +    +K T   Y  LV G     + +EAK LL+EM
Sbjct: 327 EEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEM 364



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 84/432 (19%), Positives = 158/432 (36%), Gaps = 84/432 (19%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++N V++   K GK  +A +    +   G  PN  TY  +I+    +G++    +  + L
Sbjct: 232 TFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAIL 291

Query: 234 PLM---RIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEM 289
             M   ++   S  + +L++GF   E    A  +  EM+  G  P      +L   +   
Sbjct: 292 KEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNE 351

Query: 290 GFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKAL 349
           G +  A   L EML      NV                      I Y   +  +   K L
Sbjct: 352 GKLNEAKVLLDEMLSSNLKPNV----------------------ITYNALINGYCKKKLL 389

Query: 350 ANTLDEWSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY 407
               + +       L      + T L   CK    F   E A+     V  + G+  +  
Sbjct: 390 EEARELFDNIGKQGLTPNVITFNTLLHGYCK----FGKMEEAF-LLQKVMLEKGFLPNAS 444

Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDD 467
               ++    R G +E V  L+ +++  G+                  KAD         
Sbjct: 445 TYNCLIVGFCREGKMEEVKNLLNEMQCRGV------------------KADT-------- 478

Query: 468 RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
                        + Y+ L+    + K    A  +++EM+  G+ P   T++ L+  + +
Sbjct: 479 -------------VTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCM 525

Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--YLSNSN----------LMPDAAT 575
           +G+ +    L   + + G   +   + VLIQ YC+   L ++N          L+P+  T
Sbjct: 526 EGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTT 585

Query: 576 KELLKKSLWKEG 587
            E++K+ + ++G
Sbjct: 586 YEIIKEEMMEKG 597



 Score = 43.1 bits (100), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 90/216 (41%), Gaps = 22/216 (10%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G    V     ++  L   G +     L+ ++ S  ++    T   +I+  G  KK    
Sbjct: 333 GLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALIN--GYCKK---- 386

Query: 461 LKAFHDDRTLCGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
            K   + R L   I K  L   ++ +++LL    K  +  +A  + + M+  G +P+  T
Sbjct: 387 -KLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNAST 445

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LS 565
           ++ L+  F  +G  + V+ L + ++  GV+ D   + +LI A+C+             + 
Sbjct: 446 YNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEML 505

Query: 566 NSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEK 601
           +  L P   T  +L      EG  + A  + ++ EK
Sbjct: 506 DKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEK 541


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 100/515 (19%), Positives = 187/515 (36%), Gaps = 81/515 (15%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSK----------- 132
           S LS  + L S P FSH   +  ++   L   + N + ++L+  + S K           
Sbjct: 92  SLLSFFDFLSSYPTFSHTVQSYCSMVHFLIAHRMNQQAESLLHFVVSRKGKGSASSVFAS 151

Query: 133 ------FLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
                  L+ S  F  LM  Y+  G +   +  +   ++    +       ++    K  
Sbjct: 152 ILETKGTLSSSFVFDALMSVYTEFGYVSDAIQCFRLTKKHNLKIPFNGCKCLLERMIKMS 211

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
               A+E + +++D G  PN  T+ V++  L   GK+  A  +F  +    ++ T+  + 
Sbjct: 212 SPMVALEFYLEILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFN 271

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPD 305
            L+ G+      +E   L   M +   FP      AL + + +   ++ AN   +EM   
Sbjct: 272 TLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDR 331

Query: 306 KRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLA 365
             + N   +          N    +G R+   +++   +  K L   L  ++  +  L  
Sbjct: 332 GLVPNDVTFTTLI------NGQCKNG-RVDLALEIYQQMFTKGLKADLVLYNTLIDGLCK 384

Query: 366 DAKFVWTTRLVCKVLRHFKSPE-----TAWHFFCWVA------------YQPGYTHDVYA 408
              F    + V ++ +    P+     T     C                + G   D  A
Sbjct: 385 GGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVA 444

Query: 409 LEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR 468
              +++ L R G +   +R + ++   G++    T  +++D  G  KK D  +       
Sbjct: 445 FTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMD--GFCKKGDVKM------- 495

Query: 469 TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
                   FKL                       L+EM   G +P V T++ LM     Q
Sbjct: 496 -------GFKL-----------------------LKEMQSDGHIPGVITYNVLMNGLCKQ 525

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY 563
           G  K    L + +   GV PD   + +L+Q +CK+
Sbjct: 526 GQVKNADMLLNAMLNLGVVPDDITYNILLQGHCKH 560



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 103/246 (41%), Gaps = 26/246 (10%)

Query: 382 HFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS-DGMRLP 440
           +F  P++   FF +++  P ++H V +   M+  L  H   +  + L+  + S  G    
Sbjct: 86  YFLPPKSLLSFFDFLSSYPTFSHTVQSYCSMVHFLIAHRMNQQAESLLHFVVSRKGKGSA 145

Query: 441 FSTIRLIIDFYGISKKA---DAALKAFHDDRTLCGPISKFKLMLLYS---------SLLR 488
            S    I++  G    +   DA +  + +   +   I  F+L   ++          LL 
Sbjct: 146 SSVFASILETKGTLSSSFVFDALMSVYTEFGYVSDAIQCFRLTKKHNLKIPFNGCKCLLE 205

Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548
            + K      A+    E++ SG  P+V TF+ LM     +G  K  Q +F  +R+ G++P
Sbjct: 206 RMIKMSSPMVALEFYLEILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQP 265

Query: 549 DAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV- 595
            A  F  LI  YCK             +    + PD  T   L   L KE + ++A  + 
Sbjct: 266 TAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLF 325

Query: 596 EERCEK 601
           +E C++
Sbjct: 326 KEMCDR 331



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 96/228 (42%), Gaps = 23/228 (10%)

Query: 377 CKVL--RHFK--SPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKL 432
           CK L  R  K  SP  A  F+  +    GY  +VY    ++  L + G V+    +  ++
Sbjct: 200 CKCLLERMIKMSSPMVALEFYLEI-LDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEI 258

Query: 433 RSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK 492
           R  G++    +   +I+ Y  S   +   +     + +      F  +  YS+L+  L K
Sbjct: 259 RKTGLQPTAVSFNTLINGYCKSGNLEEGFRL----KMVMEEFRVFPDVFTYSALIDGLCK 314

Query: 493 -CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAY 551
            C+ + DA ++ +EM   G+VP+  TF+ L+      G   +  +++  +   G++ D  
Sbjct: 315 ECQLE-DANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLV 373

Query: 552 MFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEG 587
           ++  LI   CK             ++   L+PD  T   L     KEG
Sbjct: 374 LYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEG 421



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 93/241 (38%), Gaps = 6/241 (2%)

Query: 40  AQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVT-----HALRSAPNADSALSIMEALKS 94
           + LID +    +   +N L   + DR L P  VT     +        D AL I + + +
Sbjct: 306 SALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFT 365

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
                 +    + L   L K     E +  +G+++    +     +  L+      GDLE
Sbjct: 366 K-GLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLE 424

Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
           L L    E  +    L   ++  ++S   + GK  +A  T R+++  G  P+  TYT+++
Sbjct: 425 LALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVM 484

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
           +     G +    ++   +           Y +L+ G     +   A  LLN M + G  
Sbjct: 485 DGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNADMLLNAMLNLGVV 544

Query: 275 P 275
           P
Sbjct: 545 P 545



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 12/151 (7%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           +++++  L +  +  DA   L EM+ +G+ PD  T++ +M  F  +GD K+  KL   ++
Sbjct: 445 FTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQ 504

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
            +G  P    + VL+   CK             + N  ++PD  T  +L +   K G+  
Sbjct: 505 SDGHIPGVITYNVLMNGLCKQGQVKNADMLLNAMLNLGVVPDDITYNILLQGHCKHGKLG 564

Query: 591 EAAAVEERCEKINDVPSLALRGHIWAVSSAD 621
           +   V+     ++D  S     H  + +S D
Sbjct: 565 DFQNVKTEMGLVSDYASYRSLLHELSKASKD 595



 Score = 39.3 bits (90), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 41/217 (18%), Positives = 89/217 (41%), Gaps = 18/217 (8%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           DV+    ++  L +   +E  + L  ++   G+     T   +I+    + + D AL+ +
Sbjct: 301 DVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIY 360

Query: 465 HDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
               T        K  ++LY++L+  L K     +A   + EM   G++PD  T++ L+ 
Sbjct: 361 QQMFT-----KGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLD 415

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMP 571
               +GD ++  ++   + + G++ D   F  +I   C            + +  + L P
Sbjct: 416 GSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKP 475

Query: 572 DAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
           D  T  ++     K+G  K    + +  +    +P +
Sbjct: 476 DDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGV 512


>gi|357167657|ref|XP_003581270.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Brachypodium distachyon]
          Length = 560

 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 81/176 (46%), Gaps = 7/176 (3%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V + +++  Y  SG +E  ++ +N+        +  +YN++++ Y K G    AV  ++Q
Sbjct: 300 VTYTSVISGYCKSGRMEDAMAVYNDMIGCGTTPNAVTYNVLINGYGKAGNMGSAVAVYQQ 359

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +I     P+  T++ +I+     G+LD A+  ++ +   +I+  +  + I++  F    R
Sbjct: 360 MILRRCPPDVVTFSTLIDGYCRCGQLDDAMRTWTEMSQYQIQPNAHTFSIIILSFCKQNR 419

Query: 258 FDEAKSLLNE--MRDDGKFPGRAMRVALERMQEMGFIQGANEFLREM-----LPDK 306
             EA   L E  MR D           ++ + + G +  AN  L EM      PDK
Sbjct: 420 SAEALRFLKELNMRTDIAPRAFICNPVIDVLCKGGKVDEANLILMEMEGKGCRPDK 475



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 149/387 (38%), Gaps = 48/387 (12%)

Query: 225 SALEVFSAL--PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD-GKFP-GRAMR 280
           S L++FSAL    + I  ++  Y  ++       R  +A  L ++M D  G FP  R + 
Sbjct: 102 STLQLFSALHSSQLAIPPSAHSYRYVISMLCQSSRHTDALKLFDQMTDQSGHFPNARFLS 161

Query: 281 VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQL 340
                    GF+  A   L +            Y      ++  N     G R+   V L
Sbjct: 162 FLAGSCANAGFLDAAAALLSKAPQFGCCVEAYAY------NKLMNSFIGCG-RVQDAVAL 214

Query: 341 -KPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQ 399
            + W+   A       +SP+V S     K V     V K L      E    F C     
Sbjct: 215 FEGWIQGGA-------YSPDVWSFNVAIKGVCQVGDVQKALELV---ERMAEFGC----- 259

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP-FSTIRLIIDFYGISKKAD 458
              + D      ++  L R   V     ++ +L+ DG+ +P   T   +I  Y  S + +
Sbjct: 260 ---SPDTVTNNILVGGLCRVKEVSRGREVLRRLQRDGVCMPNVVTYTSVISGYCKSGRME 316

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
            A+ A ++D   CG        + Y+ L+    K      A+ V ++MI     PDV TF
Sbjct: 317 DAM-AVYNDMIGCGTTPN---AVTYNVLINGYGKAGNMGSAVAVYQQMILRRCPPDVVTF 372

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK---------YLSNSNL 569
           S L+  +   G      + ++ + Q  ++P+A+ F ++I ++CK         +L   N+
Sbjct: 373 STLIDGYCRCGQLDDAMRTWTEMSQYQIQPNAHTFSIIILSFCKQNRSAEALRFLKELNM 432

Query: 570 MPDAATKELLKKS----LWKEGRRKEA 592
             D A +  +       L K G+  EA
Sbjct: 433 RTDIAPRAFICNPVIDVLCKGGKVDEA 459



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 8/149 (5%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDE-GAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           S  SY  V+S+  ++ ++ +A++ F Q+ D+ G  PN+R  + +     N G LD+A  +
Sbjct: 120 SAHSYRYVISMLCQSSRHTDALKLFDQMTDQSGHFPNARFLSFLAGSCANAGFLDAAAAL 179

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR--AMRVALERMQ 287
            S  P       +  Y  L+  F+G  R  +A +L       G +     +  VA++ + 
Sbjct: 180 LSKAPQFGCCVEAYAYNKLMNSFIGCGRVQDAVALFEGWIQGGAYSPDVWSFNVAIKGVC 239

Query: 288 EMGFIQGANEFLREML-----PDKRIKNV 311
           ++G +Q A E +  M      PD    N+
Sbjct: 240 QVGDVQKALELVERMAEFGCSPDTVTNNI 268



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 1/139 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F  L+  Y   G L+  + TW E  Q     +  +++I++  + K  ++ EA+   ++
Sbjct: 370 VTFSTLIDGYCRCGQLDDAMRTWTEMSQYQIQPNAHTFSIIILSFCKQNRSAEALRFLKE 429

Query: 198 V-IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           + +     P +     +I+ L   GK+D A  +   +     +     Y IL+ G     
Sbjct: 430 LNMRTDIAPRAFICNPVIDVLCKGGKVDEANLILMEMEGKGCRPDKYTYTILIIGHCMKG 489

Query: 257 RFDEAKSLLNEMRDDGKFP 275
           R  EA +  N+M D G  P
Sbjct: 490 RISEAITFFNKMVDTGCSP 508


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 73/163 (44%)

Query: 113 AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
            KS R  E K L+ ++S          +  LM+ +   G  +       E      L + 
Sbjct: 231 CKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNL 290

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            +Y+IV+    K G   EA E  + + +    PN   YT++IE +   GKL++A E+FS 
Sbjct: 291 ITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSN 350

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           L +  I+ T   Y +++ G +     +EA  L  EM  +G  P
Sbjct: 351 LFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLP 393



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 6/175 (3%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  +  SG ++       E   ++      +Y+ +M  + + G+  EA E  +++   G
Sbjct: 226 LINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYG 285

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +PN  TY+++++ L   G LD A E+  A+   +I+     Y IL+EG     + + A+
Sbjct: 286 LLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAAR 345

Query: 263 SLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM-----LPDKRIKNV 311
            L + +   G  P      V +  + + G    A E  REM     LP+    NV
Sbjct: 346 ELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNV 400



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 1/130 (0%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y+ ++  +   G+  EA   F+Q+++   IPN  T+T++I+ L     +  A  VF  +
Sbjct: 117 TYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETM 176

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFI 292
               ++     Y  LV+G+    + DEA+ L N M   G  P  R+  + +    + G I
Sbjct: 177 TEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRI 236

Query: 293 QGANEFLREM 302
             A   L EM
Sbjct: 237 DEAKGLLAEM 246



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 101/243 (41%), Gaps = 44/243 (18%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR---LPFSTI-------RLI--- 447
           G+  DV     ++  L + G+  +  +L+ K+   G +   + ++TI       RL+   
Sbjct: 40  GHEPDVITYSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEA 99

Query: 448 IDFYGISKKADAALKAFHDDRTLCG---------PISKFKLML---------LYSSLLRT 489
           +DF+    K       F     L G           S FK M+          ++ L+  
Sbjct: 100 MDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDG 159

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
           L K +   +A  V E M   G+ PDV T++ L+  +  +      QKLF+++ + G  P+
Sbjct: 160 LCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPN 219

Query: 550 AYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAA-VE 596
              + +LI  +CK             +S+ +L PD  T   L +   + GR +EA   ++
Sbjct: 220 VRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLK 279

Query: 597 ERC 599
           E C
Sbjct: 280 EMC 282



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 1/142 (0%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN ++  Y    +  EA + F  +  +G  PN R+Y ++I      G++D A  + + +
Sbjct: 187 TYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEM 246

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
               +      Y  L+ GF  V R  EA+ LL EM   G  P      + L+ + + G +
Sbjct: 247 SHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHL 306

Query: 293 QGANEFLREMLPDKRIKNVRYY 314
             A E L+ M   K   N+  Y
Sbjct: 307 DEAFELLKAMQESKIEPNIFIY 328



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/434 (18%), Positives = 166/434 (38%), Gaps = 58/434 (13%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + +  ++      G+  + L    +  ++    +  +YN ++    K     EA++ F +
Sbjct: 46  ITYSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSE 105

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++ EG  P+  TY+ ++    NLG+++ A  +F  +    +      + IL++G      
Sbjct: 106 MVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRM 165

Query: 258 FDEAKSLLNEMRDDGKFP----------GRAMRVALERMQEMGFIQGANEFLREMLPDKR 307
             EA  +   M + G  P          G   R  ++  Q++  I       +   P+ R
Sbjct: 166 ISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDR----KGCAPNVR 221

Query: 308 IKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADA 367
             N+             N    SG RI     L   +  K+L       +P++       
Sbjct: 222 SYNILI-----------NGHCKSG-RIDEAKGLLAEMSHKSL-------TPDI------- 255

Query: 368 KFVWTT--RLVCKVLRHFKSPETAWHFF---CWVAYQPGYTHDVYALEKMLTILARHGHV 422
            F ++T  R  C+V R    P+ A       C     P      Y++  +L  L +HGH+
Sbjct: 256 -FTYSTLMRGFCQVGR----PQEAQELLKEMCSYGLLPNLI--TYSI--VLDGLCKHGHL 306

Query: 423 ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLL 482
           +    L+  ++   +        ++I+      K +AA + F +       I     ++ 
Sbjct: 307 DEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSN--LFVKGIQ--PTVVT 362

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ ++  L K     +A  +  EM  +G +P+  T++ ++  F   GD     +L   + 
Sbjct: 363 YTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMV 422

Query: 543 QNGVEPDAYMFKVL 556
             G   D+  F++L
Sbjct: 423 GKGFSADSSTFRML 436



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 46/219 (21%), Positives = 90/219 (41%), Gaps = 21/219 (9%)

Query: 389 AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII 448
           AW  F     + G   DVY    ++        ++   +L   +   G      +  ++I
Sbjct: 169 AWLVF-ETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILI 227

Query: 449 DFYGISKKADAA--LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
           + +  S + D A  L A    ++L   I        YS+L+R   +  R  +A  +L+EM
Sbjct: 228 NGHCKSGRIDEAKGLLAEMSHKSLTPDI------FTYSTLMRGFCQVGRPQEAQELLKEM 281

Query: 507 IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY--- 563
              G++P++ T+S ++      G      +L   ++++ +EP+ +++ +LI+  C +   
Sbjct: 282 CSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKL 341

Query: 564 ------LSN---SNLMPDAATKELLKKSLWKEGRRKEAA 593
                  SN     + P   T  ++   L K G   EA 
Sbjct: 342 EAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEAC 380



 Score = 46.2 bits (108), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 29/140 (20%), Positives = 62/140 (44%), Gaps = 12/140 (8%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ +++LL  L    +  DA+ + +EM+  G  PDV T+S ++      G+  +  +L  
Sbjct: 10  LVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQLLK 69

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEG 587
            + + G +P+   +  +I + CK             +    + PD  T   +       G
Sbjct: 70  KMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLG 129

Query: 588 RRKEAAAVEERCEKINDVPS 607
           R  EA ++ ++  + N +P+
Sbjct: 130 RVNEATSLFKQMVERNVIPN 149


>gi|302816541|ref|XP_002989949.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
 gi|300142260|gb|EFJ08962.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
          Length = 447

 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 89/434 (20%), Positives = 158/434 (36%), Gaps = 48/434 (11%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           +  +YN+++  + K G+  +AV  F  +   G +PN+ T   ++  L  +G++ SAL++F
Sbjct: 24  NAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKLF 83

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEM 289
             +       TS  + IL+ GF    R   A     EM+  G  P   +  + L  + + 
Sbjct: 84  REMQAGPFLPTSASHNILLRGFFMAGR---AIEFFKEMKASGVEPDLESYHILLSALSDS 140

Query: 290 GFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKAL 349
           G +  A+     M     I       DG        +  +    I     LK   +P   
Sbjct: 141 GRMAEAHALFSAMTCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEI-----LKAGYEPN-- 193

Query: 350 ANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYAL 409
                               V+T  ++          E AW  F     +     +    
Sbjct: 194 --------------------VFTYSIIINCYCKLDKVEEAWEVF-MKMIESNCVPNAVTF 232

Query: 410 EKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRT 469
             ++    + G +E   +L A++   G +    T   +ID   + KK      A      
Sbjct: 233 NTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLID--SLCKKRGGVYTAVDLFNK 290

Query: 470 LCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
           L G       ++ Y+SL++  +  +R  D + +L  M   G  PDV T++ L+       
Sbjct: 291 LEGA-GLTPTIVTYNSLIQGFS--ERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSAN 347

Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC---KYLSNSNLM-----PDAATKELLKK 581
             +  Q+LF+ +      P+   F  LI+  C   K     N++     PD  T   +  
Sbjct: 348 RVEDAQRLFNGM---ACAPNVTTFNFLIRGLCAQKKVEEARNILDRMTAPDMTTFNTIIL 404

Query: 582 SLWKEGRRKEAAAV 595
           +  K G   +A  V
Sbjct: 405 AFCKAGAMHDAREV 418



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 103/241 (42%), Gaps = 20/241 (8%)

Query: 69  PFIVTHA-----LRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT 123
           PF+ T A     LR    A  A+   + +K++     +  + H L + L+ S R  E   
Sbjct: 90  PFLPTSASHNILLRGFFMAGRAIEFFKEMKAS-GVEPDLESYHILLSALSDSGRMAEAHA 148

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L   ++ S  +   + +  LM  Y   G      S   E  +     +  +Y+I+++ Y 
Sbjct: 149 LFSAMTCSPDI---MTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYC 205

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           K  K  EA E F ++I+   +PN+ T+  +I      G L+ A+++F+ +  +  K T  
Sbjct: 206 KLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIV 265

Query: 244 QYLILVEGFV----GVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFL 299
            Y  L++       GV     A  L N++   G  P      +L +    GF + AN+ L
Sbjct: 266 TYNTLIDSLCKKRGGVY---TAVDLFNKLEGAGLTPTIVTYNSLIQ----GFSERANDGL 318

Query: 300 R 300
           R
Sbjct: 319 R 319



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 82/432 (18%), Positives = 167/432 (38%), Gaps = 66/432 (15%)

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
           K+ +A+  F++V+     PN+ TY V+I      G++  A+ VFS +    +   +    
Sbjct: 5   KHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMN 64

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQG--ANEFLREMLP 304
            L+ G   + +   A  L  EM+     P  A    L R    GF     A EF +EM  
Sbjct: 65  TLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLR----GFFMAGRAIEFFKEM-- 118

Query: 305 DKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALAN-----TLDEWSPE 359
                       G + D +           +Y + L    D   +A      +    SP+
Sbjct: 119 ---------KASGVEPDLE-----------SYHILLSALSDSGRMAEAHALFSAMTCSPD 158

Query: 360 VVS--LLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILA 417
           +++  +L D          CK+ + +++             + GY  +V+    ++    
Sbjct: 159 IMTYNVLMDG--------YCKIGQTYEAQSLMKEIL-----KAGYEPNVFTYSIIINCYC 205

Query: 418 RHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKF 477
           +   VE    +  K+          T   +I  +  +   + A+K F +       I   
Sbjct: 206 KLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEME----KIGCK 261

Query: 478 KLMLLYSSLLRTLTKCKRD--FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ 535
             ++ Y++L+ +L K KR   + A+++  ++  +G+ P + T++ L+  F+ + ++ +  
Sbjct: 262 ATIVTYNTLIDSLCK-KRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFSERANDGL-- 318

Query: 536 KLFSMVRQNGVEPDAYMFKVLIQAYC---------KYLSNSNLMPDAATKELLKKSLWKE 586
           +L   +   G +PD   +  LI   C         +  +     P+  T   L + L  +
Sbjct: 319 RLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFNGMACAPNVTTFNFLIRGLCAQ 378

Query: 587 GRRKEAAAVEER 598
            + +EA  + +R
Sbjct: 379 KKVEEARNILDR 390



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 15/133 (11%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y  LL  L+   R  +A  +   M  S   PD+ T++ LM  +   G     Q L   + 
Sbjct: 130 YHILLSALSDSGRMAEAHALFSAMTCS---PDIMTYNVLMDGYCKIGQTYEAQSLMKEIL 186

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
           + G EP+ + + ++I  YCK             +  SN +P+A T   L     K G  +
Sbjct: 187 KAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLE 246

Query: 591 EAAAVEERCEKIN 603
           +A  +    EKI 
Sbjct: 247 DAIKLFAEMEKIG 259


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 79/169 (46%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T ++  + L K  ++ E       +++       V +  L+  Y+  G +  +L+ +N  
Sbjct: 334 TCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSM 393

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
                +     YNI++  Y K G   EA+  F Q+ + G +P++ TY  +I     +G+L
Sbjct: 394 EGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRL 453

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
             A++ F+ +  M +K  +  Y  L++GF       +AK L++EM   G
Sbjct: 454 ADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRG 502



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 4/180 (2%)

Query: 96  PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLEL 155
           P+     S + AL    A  +    L+ +I    S+ F    V +  ++  YS  G  + 
Sbjct: 260 PDVVTYSSYIDALCKARAMDKAELVLRQMI----SNGFEPDKVTYNCMIHGYSILGQWKE 315

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
               + E  +R  +    + N  MS   K GK+ EA E F  +  +G  P+  TY+V++ 
Sbjct: 316 TAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLH 375

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                G +   L +F+++    I      Y IL++ +      DEA  +  +M++ G  P
Sbjct: 376 GYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMP 435



 Score = 46.6 bits (109), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 2/169 (1%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRA-KLLSTESYNIVMSVYAKTGKNFEAVETF 195
           ++ + +L+Q +   G+L       +E   R     +T  +N +++   K G+  EA + F
Sbjct: 472 TIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIF 531

Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
             VI  G  P+  T+  +I+    +GK++ A  V  A+  + I+     Y  L++G+   
Sbjct: 532 DLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRN 591

Query: 256 ERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREML 303
            R D+   L  EM   G  P      + L  +   G   GA +   EM+
Sbjct: 592 GRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMI 640



 Score = 45.4 bits (106), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 14/121 (11%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD-EKIVQKLFS 539
           + ++S++ +L K  R  +A ++ + +I  G  PDV TF+ L+  + L G  EK    L +
Sbjct: 509 VFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDA 568

Query: 540 MVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEG 587
           M+   G+EPD   +  L+  YC            + + +  + P   T  ++   L+ +G
Sbjct: 569 MISV-GIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDG 627

Query: 588 R 588
           R
Sbjct: 628 R 628



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 18/140 (12%)

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           +S + +L K  +  +A    + M   G  PD+ T+S L++ +A +G    +  LF+ +  
Sbjct: 336 NSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEG 395

Query: 544 NGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKE 591
           NG+  D  ++ +LI AY K             +    +MPDA T   +  +  + GR  +
Sbjct: 396 NGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLAD 455

Query: 592 AAAVEERCEKINDVPSLALR 611
           A       +K N + ++ L+
Sbjct: 456 AM------DKFNQMIAMGLK 469



 Score = 44.3 bits (103), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMI--FSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           YS++L++L +  R   A+++L  M+    G  P+V +++ +++ F  +G+      LF  
Sbjct: 193 YSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHE 252

Query: 541 VRQNGVEPDAYMFKVLIQAYCK 562
           + Q GV PD   +   I A CK
Sbjct: 253 MMQQGVVPDVVTYSSYIDALCK 274



 Score = 42.4 bits (98), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 89/460 (19%), Positives = 166/460 (36%), Gaps = 101/460 (21%)

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDE-GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           NI++       ++ +AV      + E G  P++ +Y+ +++ L    +   AL++   + 
Sbjct: 158 NILLKCLCHAKRSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTM- 216

Query: 235 LMRIKRTSK------QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA-LERMQ 287
              +K++         Y  ++ GF       +A +L +EM   G  P      + ++ + 
Sbjct: 217 ---VKKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALC 273

Query: 288 EMGFIQGANEFLREML-----PDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKP 342
           +   +  A   LR+M+     PDK   N   +                     Y + L  
Sbjct: 274 KARAMDKAELVLRQMISNGFEPDKVTYNCMIH--------------------GYSI-LGQ 312

Query: 343 WLDPKALANTLDEWSPEVVSLLADAKFVWTTR-LVCKVLRHFKSPETAWHFFCWVAYQPG 401
           W   K  A    E +     L+ D   ++T    +  + +H KS E A  F    A   G
Sbjct: 313 W---KETAGMFREMTRR--GLMPD---IFTCNSYMSSLCKHGKSKEAAEFFDSMAA--KG 362

Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL 461
           +  D+     +L   A  G+V  +  L   +  +G+    S   ++ID YG     D A 
Sbjct: 363 HKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEA- 421

Query: 462 KAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL 521
                             ML+++                    +M   G++PD  T+  +
Sbjct: 422 ------------------MLIFT--------------------QMQERGVMPDAWTYGTV 443

Query: 522 MYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY-------------LSNSN 568
           +  F+  G        F+ +   G++PD  ++  LIQ +C +             +S   
Sbjct: 444 IAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGI 503

Query: 569 LMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
             P+      +  SL KEGR  EA  + +    I + P +
Sbjct: 504 PRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDV 543



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 47/99 (47%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++N ++  Y   GK  +A      +I  G  P+  TY+ +++     G++D  L +F  +
Sbjct: 545 TFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREM 604

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
               +K T+  Y I++ G     R   AK + +EM + G
Sbjct: 605 LSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESG 643



 Score = 39.7 bits (91), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 23/102 (22%), Positives = 46/102 (45%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SYN V+  + + G+  +A   F +++ +G +P+  TY+  I+ L     +D A  V   +
Sbjct: 229 SYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQM 288

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                +     Y  ++ G+  + ++ E   +  EM   G  P
Sbjct: 289 ISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMP 330


>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Glycine max]
          Length = 836

 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 114/279 (40%), Gaps = 6/279 (2%)

Query: 37  LRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNP 96
           + R+  + ++++  +  S N   S   D LL P +V   L        A+ +   L +  
Sbjct: 441 MERSGFVSALKIVTKLLSGNIRVS---DSLLTPLVV--GLCKCEGHSEAIELWFKLAAVK 495

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
             + N  T +AL   L +     E+  ++  +     L   +++  L+      G +E  
Sbjct: 496 GLAANTVTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEA 555

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
                E  Q+     T +YN +M   A  GK  +      +  + G +PN  TY +++E 
Sbjct: 556 FKLKEEMVQQEFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEG 615

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
                +++ A++ F  L   +++ +S  Y IL+  +  +    EA  L + M+  G  P 
Sbjct: 616 YCKADRIEDAVKFFKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPT 675

Query: 277 RAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
            A   +L   M  +G +  A E   EM  +  + NV  Y
Sbjct: 676 CATYSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCY 714



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 69/149 (46%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           SV +  L+  Y   G++       +  + R  L +  +Y+ ++      G+  EA E F 
Sbjct: 641 SVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAKEIFE 700

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           ++ +EG +PN   YT +I     LG++D    +   +    I+     Y I+++G+  + 
Sbjct: 701 EMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRPNKITYTIMIDGYCKLG 760

Query: 257 RFDEAKSLLNEMRDDGKFPGRAMRVALER 285
              EA+ LLNEM  +G  P      AL++
Sbjct: 761 NMKEARELLNEMIRNGIAPDTVTYNALQK 789



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 94/473 (19%), Positives = 182/473 (38%), Gaps = 78/473 (16%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++   ++ + K G+  +AV+ F ++   G  PN  TY  +I+ L   G+ + AL     +
Sbjct: 257 TFTTAINAFCKGGRVGDAVDLFCKMEGLGVFPNVVTYNNVIDGLFKSGRFEEALRFKDRM 316

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL----ERMQEM 289
              ++  +   Y +L+ G + +E F+EA  +L EM   G  P   +  AL     R  +M
Sbjct: 317 VRSKVNPSVVTYGVLISGLMKLEMFEEANEVLVEMYSMGFAPNEVVFNALIDGYCRKGDM 376

Query: 290 G-FIQGANEF-LREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPK 347
           G  ++  +E  ++ M P+    N         +  ++ +            Q+  ++   
Sbjct: 377 GEALRVRDEMAMKGMKPNFVTFNTLLQGFCRSNQMEQAE------------QVLVYILSS 424

Query: 348 ALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLR-------HFKSPETAWHFFC------ 394
            L+  +D  S  +  L+  + FV   ++V K+L           +P       C      
Sbjct: 425 GLSVNMDVCSYVIHRLMERSGFVSALKIVTKLLSGNIRVSDSLLTPLVVGLCKCEGHSEA 484

Query: 395 ---W--VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM---RLPFSTIRL 446
              W  +A   G   +      +L  L   G++E V  ++ ++   G+   R+ ++T+  
Sbjct: 485 IELWFKLAAVKGLAANTVTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTL-- 542

Query: 447 IIDFYGISK----------KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
               +G  K          K +   + F  D               Y+ L++ L    + 
Sbjct: 543 ---IFGCCKWGKIEEAFKLKEEMVQQEFQPD------------TYTYNFLMKGLADMGKI 587

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
            D   +L E    G VP+V T++ L+  +      +   K F  +    VE  + ++ +L
Sbjct: 588 DDVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRIEDAVKFFKNLDYEKVELSSVVYNIL 647

Query: 557 IQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
           I AYC+             + +  ++P  AT   L   +   GR  EA  + E
Sbjct: 648 IAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAKEIFE 700



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 91/208 (43%), Gaps = 22/208 (10%)

Query: 398 YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA 457
           +QP    D Y    ++  LA  G ++ V RL+ + +  G      T  L+++ Y  + + 
Sbjct: 567 FQP----DTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRI 622

Query: 458 DAALKAFHDDRTLCGPISKFKLM-LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
           + A+K F +         K +L  ++Y+ L+    +     +A  + + M   GI+P   
Sbjct: 623 EDAVKFFKNL-----DYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCA 677

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------L 564
           T+S L++     G     +++F  +R  G+ P+ + +  LI  +CK             +
Sbjct: 678 TYSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLEM 737

Query: 565 SNSNLMPDAATKELLKKSLWKEGRRKEA 592
           S++ + P+  T  ++     K G  KEA
Sbjct: 738 SSNGIRPNKITYTIMIDGYCKLGNMKEA 765



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 8/173 (4%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   DV+     +    + G V     L  K+   G+     T   +ID    S + + A
Sbjct: 250 GVAPDVFTFTTAINAFCKGGRVGDAVDLFCKMEGLGVFPNVVTYNNVIDGLFKSGRFEEA 309

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           L+    DR +   ++    ++ Y  L+  L K +   +A  VL EM   G  P+   F+ 
Sbjct: 310 LR--FKDRMVRSKVNPS--VVTYGVLISGLMKLEMFEEANEVLVEMYSMGFAPNEVVFNA 365

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDA 573
           L+  +  +GD     ++   +   G++P+   F  L+Q +C+    SN M  A
Sbjct: 366 LIDGYCRKGDMGEALRVRDEMAMKGMKPNFVTFNTLLQGFCR----SNQMEQA 414


>gi|240254191|ref|NP_174467.4| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|357528959|sp|Q9C6S6.2|PPR67_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g31840
 gi|332193282|gb|AEE31403.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 840

 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 7/179 (3%)

Query: 53  NSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHA 107
           ++S   ++L+  ++ +P IVT+        S    D A  I E LK  P F  N  TL  
Sbjct: 619 DASKFFNNLIEGKM-EPDIVTYNTMICGYCSLRRLDEAERIFELLKVTP-FGPNTVTLTI 676

Query: 108 LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA 167
           L  VL K+        +   ++       +V +  LM W+S S D+E     + E +++ 
Sbjct: 677 LIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKG 736

Query: 168 KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
              S  SY+I++    K G+  EA   F Q ID   +P+   Y ++I     +G+L  A
Sbjct: 737 ISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRLVEA 795



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 99/487 (20%), Positives = 188/487 (38%), Gaps = 35/487 (7%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + +  L+  Y  +G L +    +++   +   L    ++  + VY K+G    A   +++
Sbjct: 322 IAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKR 381

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++ +G  PN  TYT++I+ L   G++  A  ++  +    ++ +   Y  L++GF     
Sbjct: 382 MLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGN 441

Query: 258 FDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
                +L  +M   G  P   +  V ++ + + G +  A  F  +ML      NV  +  
Sbjct: 442 LRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNS 501

Query: 317 GSDDDEDEN--DDNNSGVRIA--YGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF--- 369
             D     N  D+     R+   YG++         +  ++ E   E    L    F   
Sbjct: 502 LIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMG 561

Query: 370 -----VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVEL 424
                +    L+    +H K P      F  +  +   + D+     ++ +L +   +E 
Sbjct: 562 LEPDALAYCTLIDAFCKHMK-PTIGLQLF-DLMQRNKISADIAVCNVVIHLLFKCHRIED 619

Query: 425 VDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR-TLCGPISKFKLMLLY 483
             +    L    M     T   +I  Y   ++ D A + F   + T  GP +     +  
Sbjct: 620 ASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNT-----VTL 674

Query: 484 SSLLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           + L+  L K   D D AI +   M   G  P+  T+  LM  F+   D +   KLF  ++
Sbjct: 675 TILIHVLCK-NNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQ 733

Query: 543 QNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRK 590
           + G+ P    + ++I   CK               ++ L+PD     +L +   K GR  
Sbjct: 734 EKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRLV 793

Query: 591 EAAAVEE 597
           EAA + E
Sbjct: 794 EAALLYE 800



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 98/230 (42%), Gaps = 12/230 (5%)

Query: 347 KALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHF---KSPETAWHFFCWVAYQPGYT 403
           K L+    E +  ++SL+ D          C ++  F      + A+  F  V  Q G  
Sbjct: 260 KGLSVDQIEVASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLF-KVMEQRGIE 318

Query: 404 HDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKA 463
            D+ A   ++    + G + +  +L ++    G++L        ID Y   K  D A  +
Sbjct: 319 PDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVY--VKSGDLATAS 376

Query: 464 FHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
               R LC  IS    ++ Y+ L++ L +  R ++A  +  +++  G+ P + T+S L+ 
Sbjct: 377 VVYKRMLCQGISPN--VVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLID 434

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDA 573
            F   G+ +    L+  + + G  PD  ++ VL+      LS   LM  A
Sbjct: 435 GFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDG----LSKQGLMLHA 480



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 21/154 (13%)

Query: 471 CGPISKFKLMLLYSSLLRTLTK---CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
           CGP      ++ + +L+    K     R FD   V+E+    GI PD+  +S L+  +  
Sbjct: 280 CGPAPN---VVTFCTLINGFCKRGEMDRAFDLFKVMEQ---RGIEPDLIAYSTLIDGYFK 333

Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAAT 575
            G   +  KLFS     GV+ D  +F   I  Y K             +    + P+  T
Sbjct: 334 AGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVT 393

Query: 576 KELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA 609
             +L K L ++GR  EA  +  +  K    PS+ 
Sbjct: 394 YTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIV 427


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 95/238 (39%), Gaps = 49/238 (20%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D Y    +++ + + G +E    ++ K++  G+     T   +ID Y    K D  
Sbjct: 301 GVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGY--CNKGDL- 357

Query: 461 LKAF--HDD---RTLCGPISKFKLML-----------------------------LYSSL 486
           +KAF   D+   R +   +S + L++                              Y+ L
Sbjct: 358 VKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNIL 417

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           +    +C     A N+ +EMI  GI P + T++ L+Y  + +   K    LF  + + G 
Sbjct: 418 INGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGA 477

Query: 547 EPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
            PD  MF  LI  +C            K +   N++PD  T   L +   +EG+ +EA
Sbjct: 478 SPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEA 535



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 95/237 (40%), Gaps = 4/237 (1%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           V H   S    + A  +++ +K N     +  T  +L + + K  +  E   ++  +   
Sbjct: 277 VIHGYCSRGRVEGARMVLDIMK-NRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEI 335

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
             L  +V +  L+  Y   GDL       +E  +RA L +  +YN+++      GK  EA
Sbjct: 336 GLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEA 395

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
               + + D G +P+S TY ++I      G    A  +   +    I+ T   Y  L+  
Sbjct: 396 DGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYV 455

Query: 252 FVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKR 307
                R   A  L  ++  +G  P   M  AL +     G +  A   L+EM  DKR
Sbjct: 456 LSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEM--DKR 510



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 70/172 (40%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T + +  VL K  +  + K  IG + +       V +  ++  Y + G +E      +  
Sbjct: 238 TFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIM 297

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
           + R     + +Y  ++S   K GK  EA     ++ + G +P + TY  +I+   N G L
Sbjct: 298 KNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDL 357

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             A      +    I  T   Y +L+       + DEA  ++ +M D G  P
Sbjct: 358 VKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVP 409



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 74/173 (42%)

Query: 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
           ST + L   L    +  E   +I D+  S  +  S+ +  L+  Y   G+ +   +  +E
Sbjct: 377 STYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDE 436

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
              +    +  +Y  ++ V +K  +   A + F ++I EGA P+   +  +I+     G 
Sbjct: 437 MISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGN 496

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           LD A  +   +    I      Y  L++G     + +EA+ LL EM+  G  P
Sbjct: 497 LDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRP 549



 Score = 46.2 bits (108), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 60/138 (43%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + F  L+  +  +G+L+   +   E  +R  +    +YN +M    + GK  EA E  ++
Sbjct: 482 IMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKE 541

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G  P+  +Y  +I      G ++ A  +   +  +    T   Y  L++G    ++
Sbjct: 542 MKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQ 601

Query: 258 FDEAKSLLNEMRDDGKFP 275
            D A+ LL EM   G  P
Sbjct: 602 GDLAEELLKEMVSKGITP 619



 Score = 45.4 bits (106), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 34/174 (19%), Positives = 67/174 (38%), Gaps = 47/174 (27%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM------------------ 522
           +++  L+R   + KR  DA    + M   G+VP ++TF+ ++                  
Sbjct: 167 IVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAE 226

Query: 523 ----------YHFAL-------QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--- 562
                     Y F +       +G  K  +     +   GV+P+   +  +I  YC    
Sbjct: 227 MFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGR 286

Query: 563 ---------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
                     + N  + PD+ T   L   + K G+ +EA+ + E+ ++I  +P+
Sbjct: 287 VEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPT 340



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 51/124 (41%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  LMQ     G +E       E ++R       SYN ++S Y+K G   +A     +
Sbjct: 517 VTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDE 576

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++  G  P   TY  +I+ L    + D A E+   +    I      Y  L+EG   V+ 
Sbjct: 577 MLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEGIGKVDD 636

Query: 258 FDEA 261
             EA
Sbjct: 637 SSEA 640



 Score = 39.3 bits (90), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 24/205 (11%)

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF--HDDRTLCGPISKF 477
           G ++  D +I  +   G+     T  ++I+ Y    +   A KAF  HD+      ISK 
Sbjct: 390 GKMDEADGMIKDMGDSGIVPDSITYNILINGYC---RCGNAKKAFNLHDEM-----ISKG 441

Query: 478 --KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ 535
               ++ Y+SL+  L+K  R   A ++ E++I  G  PD+  F+ L+      G+     
Sbjct: 442 IQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAF 501

Query: 536 KLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSL 583
            L   + +  + PD   +  L+Q  C            K +    + PD  +   L    
Sbjct: 502 ALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGY 561

Query: 584 WKEGRRKEAAAVEERCEKINDVPSL 608
            K G   +A  + +    I   P+L
Sbjct: 562 SKRGDINDAFTIRDEMLSIGFNPTL 586


>gi|359489475|ref|XP_002267721.2| PREDICTED: conserved oligomeric Golgi complex subunit 4-like [Vitis
           vinifera]
          Length = 1105

 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 96/232 (41%), Gaps = 28/232 (12%)

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           V K++     P  A   F   + QP + H   +   ++  L       L+  L+ +L+S+
Sbjct: 48  VQKLIASQSDPLLAKEIFDLASLQPNFKHSYSSFHILILKLGWARQFSLMQDLLMRLKSE 107

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPISK-----FKLMLLYSSLLRT 489
              +  S    II+ YG +   D ALK FH        P+ K      +L++ + + +R 
Sbjct: 108 QYSINPSLFSDIIEIYGEANLPDQALKTFHSMLQFHSKPLPKHLNRLLQLLVSHRNYIRP 167

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
                    A ++ +     G+ PD ++++ LM  F   GD  I   LF+ + +  V PD
Sbjct: 168 ---------AFDLFKSAHRYGVSPDTKSYNILMSAFCFNGDLSIAYTLFNQMFKRDVAPD 218

Query: 550 AYMFKVLIQAYCKY------------LSNSNLMPDAA-TKELLKKSLWKEGR 588
              +++L+Q  C+             + N   +PDA     L  + L+ E +
Sbjct: 219 VESYRILMQGLCRKSQVNRAVDLLEDMLNKGYVPDATLVSGLCDQGLYDEAK 270



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 103/249 (41%), Gaps = 47/249 (18%)

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKF-LNVSV--------------- 138
            PNF H+ S+ H L   L  +++   ++ L+  + S ++ +N S+               
Sbjct: 71  QPNFKHSYSSFHILILKLGWARQFSLMQDLLMRLKSEQYSINPSLFSDIIEIYGEANLPD 130

Query: 139 ----NFMNLMQWYSTSGD------LELVLSTWNEYRQRAKLL----------STESYNIV 178
                F +++Q++S          L+L++S  N  R    L            T+SYNI+
Sbjct: 131 QALKTFHSMLQFHSKPLPKHLNRLLQLLVSHRNYIRPAFDLFKSAHRYGVSPDTKSYNIL 190

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI 238
           MS +   G    A   F Q+      P+  +Y ++++ L    +++ A+++   +     
Sbjct: 191 MSAFCFNGDLSIAYTLFNQMFKRDVAPDVESYRILMQGLCRKSQVNRAVDLLEDM----- 245

Query: 239 KRTSKQYL---ILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQG 294
              +K Y+    LV G      +DEAK+ + EM   G           +     +G ++ 
Sbjct: 246 --LNKGYVPDATLVSGLCDQGLYDEAKNYVEEMLSKGFSLHFSVFHALINGFCNVGKLEE 303

Query: 295 ANEFLREML 303
           A E LREML
Sbjct: 304 ACEVLREML 312



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 5/176 (2%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           LM  +  +GDL +  + +N+  +R      ESY I+M    +  +   AV+    ++++G
Sbjct: 190 LMSAFCFNGDLSIAYTLFNQMFKRDVAPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKG 249

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +P++     ++  L + G  D A      +           +  L+ GF  V + +EA 
Sbjct: 250 YVPDA----TLVSGLCDQGLYDEAKNYVEEMLSKGFSLHFSVFHALINGFCNVGKLEEAC 305

Query: 263 SLLNEMRDDGKFPGRAMRVA-LERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDG 317
            +L EM   G+ P     VA + R+ E+  +        E L  +   N R  E G
Sbjct: 306 EVLREMLRHGEAPHTETWVAIIPRICEVDKLVRMENIFDEALKLEITPNTRLVEAG 361


>gi|297817780|ref|XP_002876773.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322611|gb|EFH53032.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 559

 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 70/143 (48%), Gaps = 1/143 (0%)

Query: 133 FLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV 192
           F NV V F  L+  Y  +GDLE+V+S + E R+    L+  +Y  ++  + K G+   A 
Sbjct: 195 FPNV-VTFTCLIDGYCKAGDLEVVVSLYEEMRRVRMSLNVVTYTALIDGFCKKGEMQRAG 253

Query: 193 ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
             + +++++   PNS  YT +I      G  D+A++  + +    ++     Y +++ G 
Sbjct: 254 GMYLRMLEDRVEPNSLVYTTIINGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGL 313

Query: 253 VGVERFDEAKSLLNEMRDDGKFP 275
            G+ +  EA  ++ +M      P
Sbjct: 314 CGIGKLKEATEIVEDMEKGDLVP 336



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 92/428 (21%), Positives = 178/428 (41%), Gaps = 72/428 (16%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y+  + ++ K+G+   A+++F  +  +   PN  T+T +I+     G L+  + ++  +
Sbjct: 165 TYSTWIDMFCKSGELKLALKSFNCMKRDALFPNVVTFTCLIDGYCKAGDLEVVVSLYEEM 224

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
             +R+      Y  L++GF        A  +   M +D   P   +   +      GF Q
Sbjct: 225 RRVRMSLNVVTYTALIDGFCKKGEMQRAGGMYLRMLEDRVEPNSLVYTTIIN----GFFQ 280

Query: 294 -----GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRI---AYGVQLKPWLD 345
                 A +FL +ML                         N G+R+   AYGV +     
Sbjct: 281 RGDSDNAMKFLAKML-------------------------NQGMRLDITAYGVIISGLCG 315

Query: 346 PKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLR-HFKSPE-----TAWHFFCWVAYQ 399
              L     + + E+V  +     V    +   ++  +FKS         +H      ++
Sbjct: 316 IGKL-----KEATEIVEDMEKGDLVPDMMIFTTMMNAYFKSGRMKAAVNMYHKLIERGFE 370

Query: 400 PGYTHDVYALEKMLTILARHGHV-ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           P    DV AL  M+  +A++G + E +     +  +D M        ++ID   + K+ D
Sbjct: 371 P----DVVALSTMIDGIAKNGQLHEAISYFCTEKANDVM------YTVLID--ALCKEED 418

Query: 459 AALKAFHDDRTLCGPISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
                F +   L   IS+  L+    +Y+S +  L K     DA  +  +M+  G+  D+
Sbjct: 419 -----FIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTKMVQEGLELDL 473

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK---YLSNSNLMPD 572
             ++ L+Y    +G     +++F  + ++GV PD+ +F +LI+AY K     + S+L+ D
Sbjct: 474 FAYTTLIYGLTSKGLMVEARQVFDEMLRSGVCPDSAVFDLLIRAYEKEGNMTTASDLLLD 533

Query: 573 AATKELLK 580
             T+ L +
Sbjct: 534 MQTRGLAR 541



 Score = 46.6 bits (109), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 97/465 (20%), Positives = 190/465 (40%), Gaps = 60/465 (12%)

Query: 81  NAD--SALSIMEALKSNPNFSHNQS--TLHALATVLAKSQRNHELKTLIGDISSSKFLNV 136
           N D  SA  ++E+L+++  F+      + + L    +K +   E+   +G +      NV
Sbjct: 104 NGDIRSACLVLESLRASYGFTCKPDIVSFNTLFNGFSKMKMLDEVFVYMGVMLKCCSPNV 163

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
            V +   +  +  SG+L+L L ++N  ++ A   +  ++  ++  Y K G     V  + 
Sbjct: 164 -VTYSTWIDMFCKSGELKLALKSFNCMKRDALFPNVVTFTCLIDGYCKAGDLEVVVSLYE 222

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           ++       N  TYT +I+     G++  A  ++  +   R++  S  Y  ++ GF    
Sbjct: 223 EMRRVRMSLNVVTYTALIDGFCKKGEMQRAGGMYLRMLEDRVEPNSLVYTTIINGFFQRG 282

Query: 257 RFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQGANEFLREM-----LPDKRIKN 310
             D A   L +M + G +    A  V +  +  +G ++ A E + +M     +PD  I  
Sbjct: 283 DSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGIGKLKEATEIVEDMEKGDLVPDMMIFT 342

Query: 311 VR---YYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADA 367
                Y++ G               R+   V +   L  +        + P+VV+L    
Sbjct: 343 TMMNAYFKSG---------------RMKAAVNMYHKLIERG-------FEPDVVAL---- 376

Query: 368 KFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDR 427
                + ++  + ++ +  E   +F    A    YT  + AL K          +E V+R
Sbjct: 377 -----STMIDGIAKNGQLHEAISYFCTEKANDVMYTVLIDALCK------EEDFIE-VER 424

Query: 428 LIAKLRSDGMRLP--FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSS 485
           L +K+   G+ +P  F     I    G+ K+ +  + AF     +     +  L   Y++
Sbjct: 425 LFSKISEAGL-VPDKFMYTSWIA---GLCKQGN-LVDAFKLKTKMVQEGLELDL-FAYTT 478

Query: 486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
           L+  LT      +A  V +EM+ SG+ PD   F  L+  +  +G+
Sbjct: 479 LIYGLTSKGLMVEARQVFDEMLRSGVCPDSAVFDLLIRAYEKEGN 523



 Score = 39.3 bits (90), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 29/182 (15%)

Query: 427 RLIAKLRSDGMRLPFSTIRLIID-FYGISKKADAALKAFHDDRTLCGPISKFKL---MLL 482
           + +AK+ + GMRL  +   +II    GI K  +A          +   + K  L   M++
Sbjct: 289 KFLAKMLNQGMRLDITAYGVIISGLCGIGKLKEAT--------EIVEDMEKGDLVPDMMI 340

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           +++++    K  R   A+N+  ++I  G  PDV   S ++   A  G        F   +
Sbjct: 341 FTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAISYFCTEK 400

Query: 543 QNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRK 590
            N V     M+ VLI A CK             +S + L+PD          L K+G   
Sbjct: 401 ANDV-----MYTVLIDALCKEEDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLV 455

Query: 591 EA 592
           +A
Sbjct: 456 DA 457


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 78/406 (19%), Positives = 159/406 (39%), Gaps = 64/406 (15%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           +++++  Y +  K  E  +TF+ +  +G + +      ++  LV +G +D A EV++ + 
Sbjct: 118 FDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIA 177

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQG 294
              I+       I+V       + D+ K  L +M   G F        L           
Sbjct: 178 RSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTL----------- 226

Query: 295 ANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLD 354
            N + RE L                              +    ++   +  K L  TL 
Sbjct: 227 INAYCREGL------------------------------LGEAFEVMNSMSGKGLKPTLF 256

Query: 355 EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVA----------------- 397
            ++  +  L    ++V    +  ++L    SP+T  +    V                  
Sbjct: 257 TYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDM 316

Query: 398 YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI-RLIIDFYGISKK 456
              G + D+ +   ++ + +R+GH++        +++ G+ +P + I  ++I+ Y  +  
Sbjct: 317 LHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGL-VPDNVIYTILINGYCRNGM 375

Query: 457 ADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
              AL+   D     G       ++ Y+++L  L K K   DA  + +EM+  G+VPD  
Sbjct: 376 MSEALE-IRDKMLEQGCALD---VVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFC 431

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           TF+ L++    +G+      LF ++ Q  ++PD   + +LI  +CK
Sbjct: 432 TFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCK 477



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 90/203 (44%), Gaps = 4/203 (1%)

Query: 105 LHALATVLAKSQRNHELKTLI---GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWN 161
           L + ++++  S RN  L   +    D+ +S  +  +V +  L+  Y  +G +   L   +
Sbjct: 325 LISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRD 384

Query: 162 EYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG 221
           +  ++   L   +YN +++   K     +A   F ++++ G +P+  T+T +I      G
Sbjct: 385 KMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEG 444

Query: 222 KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMR 280
            +  AL +F  +    IK     Y IL++GF      ++A  L NEM     FP   +  
Sbjct: 445 NMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYA 504

Query: 281 VALERMQEMGFIQGANEFLREML 303
           + +     +GF+  A     EM+
Sbjct: 505 ILVNGYCNLGFVSEAFRLWDEMI 527



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 88/212 (41%), Gaps = 1/212 (0%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + H      N   ALS+   + +  N   +  T + L     K+    +   L  ++ S 
Sbjct: 436 LIHGHCKEGNMGKALSLF-GIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISR 494

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
           K     +++  L+  Y   G +      W+E  ++    +  + N V+  Y ++G   +A
Sbjct: 495 KIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKA 554

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
            E   ++I EG  P+S TY  +I   V    +D A  + + +    ++     Y +++ G
Sbjct: 555 DEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNG 614

Query: 252 FVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
           F    R  EA+ +L +M + G  P R+    L
Sbjct: 615 FCRQGRMQEAELILRKMIERGIDPDRSTYTTL 646



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 91/457 (19%), Positives = 169/457 (36%), Gaps = 62/457 (13%)

Query: 162 EYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG 221
           +  Q+       +YN +++ Y + G   EA E    +  +G  P   TY  +I  L   G
Sbjct: 210 DMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKG 269

Query: 222 KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRV 281
           +   A  VF+ +  + +   +  Y  L+        F EAK + ++M   G  P      
Sbjct: 270 RYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFS 329

Query: 282 ALERMQEM-GFIQGANEFLREM-----LPDKRIKNV---RYYEDGSDDDEDENDDNNSGV 332
           +L  +    G +  A  + R+M     +PD  I  +    Y  +G   +  E  D     
Sbjct: 330 SLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKM--- 386

Query: 333 RIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHF 392
                ++    LD  A    L+    +   LLADA  ++   +   V+  F +  T  H 
Sbjct: 387 -----LEQGCALDVVAYNTILNGLCKK--KLLADANALFDEMVERGVVPDFCTFTTLIHG 439

Query: 393 FCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYG 452
            C                       + G++     L   +    ++    T  ++ID + 
Sbjct: 440 HC-----------------------KEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFC 476

Query: 453 ISKKADAALKAFHDDRTLCGPISK--FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSG 510
            + + + A + +++       IS+  F   + Y+ L+          +A  + +EMI  G
Sbjct: 477 KTTEMEKANELWNE------MISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKG 530

Query: 511 IVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK-------- 562
           I P + T + ++  +   GD     +    +   GV PD+  +  LI  + K        
Sbjct: 531 IKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAF 590

Query: 563 YLSNS----NLMPDAATKELLKKSLWKEGRRKEAAAV 595
           +L N      L PD  T  ++     ++GR +EA  +
Sbjct: 591 FLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELI 627



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 91/224 (40%), Gaps = 17/224 (7%)

Query: 387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
           + AW  +  +A + G   +VY L  M+  L +   ++ V   +  +   G+     T   
Sbjct: 167 DLAWEVYNEIA-RSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNT 225

Query: 447 IIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
           +I+ Y    +     +AF    ++ G   K  L   Y++++  L K  R   A  V  EM
Sbjct: 226 LINAYC---REGLLGEAFEVMNSMSGKGLKPTL-FTYNAVINGLCKKGRYVRAKGVFNEM 281

Query: 507 IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI--------- 557
           +  G+ PD  T++ L+       +    + +FS +   GV PD   F  LI         
Sbjct: 282 LSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHL 341

Query: 558 -QA--YCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
            QA  Y + +  S L+PD     +L     + G   EA  + ++
Sbjct: 342 DQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDK 385



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 97/500 (19%), Positives = 179/500 (35%), Gaps = 73/500 (14%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  TL+ +   L K  +  ++K  + D+         V +  L+  Y   G L       
Sbjct: 184 NVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVM 243

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY-TVMIEHLVN 219
           N    +    +  +YN V++   K G+   A   F +++  G  P++ TY T+++E   N
Sbjct: 244 NSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRN 303

Query: 220 L----------------------------------GKLDSALEVFSALPLMRIKRTSKQY 245
                                              G LD AL  F  +    +   +  Y
Sbjct: 304 NNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIY 363

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQGANEFLREMLP 304
            IL+ G+       EA  + ++M + G      A    L  + +   +  AN    EM+ 
Sbjct: 364 TILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVE 423

Query: 305 DKRIKNVRYYEDGSDDDEDENDDNNSGVRIA-YGVQLKPWLDPKALANTLDEWSPEVVSL 363
              + +   +   +        + N G  ++ +G+  +  + P  +            ++
Sbjct: 424 RGVVPDFCTF---TTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVT----------YNI 470

Query: 364 LADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVE 423
           L D          CK     K+ E  W+        P   H  YA+  ++      G V 
Sbjct: 471 LIDG--------FCKTTEMEKANE-LWNEMISRKIFP--NHISYAI--LVNGYCNLGFVS 517

Query: 424 LVDRLIAKLRSDGMRLPFSTIRLIIDFY---GISKKADAALKAFHDDRTLCGPISKFKLM 480
              RL  ++   G++    T   +I  Y   G   KAD  L     +    GP S     
Sbjct: 518 EAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGV--GPDS----- 570

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           + Y++L+    K +    A  ++ +M   G+ PDV T++ ++  F  QG  +  + +   
Sbjct: 571 ITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRK 630

Query: 541 VRQNGVEPDAYMFKVLIQAY 560
           + + G++PD   +  LI  Y
Sbjct: 631 MIERGIDPDRSTYTTLINGY 650



 Score = 39.7 bits (91), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 7/144 (4%)

Query: 136 VSVNFMN-LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
           VS+N  N L+      G ++L    +NE  +    L+  + NI+++   K  K  + V+ 
Sbjct: 148 VSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHK-IDDVKP 206

Query: 195 FRQVID---EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
           F  +ID   +G   +  TY  +I      G L  A EV +++    +K T   Y  ++ G
Sbjct: 207 F--LIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVING 264

Query: 252 FVGVERFDEAKSLLNEMRDDGKFP 275
                R+  AK + NEM   G  P
Sbjct: 265 LCKKGRYVRAKGVFNEMLSIGLSP 288


>gi|326507622|dbj|BAK03204.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 435

 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 92/213 (43%), Gaps = 5/213 (2%)

Query: 65  RLLDPFIVT-HALRSAPNADSALSIMEALKSN---PNFSHNQSTLHALATVLAKSQRNHE 120
           R + P +VT + L  A   +  +   E LK        S N  T   L   L  + R  +
Sbjct: 190 RGVRPTVVTFNTLVGAACQEGDVGAAEQLKEEMVRRGVSPNAVTYSLLMRGLCDAGRQDD 249

Query: 121 LKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS 180
            K L+ D+        +VN+  LM  Y+  GD++ V    ++ R+R       SYN+++ 
Sbjct: 250 AKKLMFDMEYQGCQTEAVNYGVLMSAYARQGDVDSVRGLLSDMRKRKLGPDDASYNVLIK 309

Query: 181 VYAKTGKNFEAVETFRQV-IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIK 239
               +GK  EA +   ++ + +G +P++ TY V+ +     G     L VF+A+     +
Sbjct: 310 CLCDSGKVEEAHKALVEMQLKDGTVPSAATYRVLADGCCRAGDFGLGLRVFNAMLASGHR 369

Query: 240 RTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
                +  L +G       DEA  +L +M + G
Sbjct: 370 PLGHTFKHLAKGLGEDGMADEACFVLEKMAESG 402



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/242 (19%), Positives = 105/242 (43%), Gaps = 5/242 (2%)

Query: 76  LRSAPNADSALSIMEALKSNPNF-SHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFL 134
           L +A   D+AL +    ++ P F SH+ +T HAL   L  + R    + ++   +     
Sbjct: 101 LGAASRPDAALLVF--FRAVPAFCSHSNATFHALIHCLVCNGRVDAARNMLPRAAKLGVR 158

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
             +V++  +++               +E   R    +  ++N ++    + G    A + 
Sbjct: 159 PNAVSYNIILKGLCGRDGSAGARVVLDEMLGRGVRPTVVTFNTLVGAACQEGDVGAAEQL 218

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
             +++  G  PN+ TY++++  L + G+ D A ++   +     +  +  Y +L+  +  
Sbjct: 219 KEEMVRRGVSPNAVTYSLLMRGLCDAGRQDDAKKLMFDMEYQGCQTEAVNYGVLMSAYAR 278

Query: 255 VERFDEAKSLLNEMRDDGKFPGRA-MRVALERMQEMGFIQGANEFLREM-LPDKRIKNVR 312
               D  + LL++MR     P  A   V ++ + + G ++ A++ L EM L D  + +  
Sbjct: 279 QGDVDSVRGLLSDMRKRKLGPDDASYNVLIKCLCDSGKVEEAHKALVEMQLKDGTVPSAA 338

Query: 313 YY 314
            Y
Sbjct: 339 TY 340



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 13/118 (11%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS L+R L    R  DA  ++ +M + G   +   +  LM  +A QGD   V+ L S +R
Sbjct: 234 YSLLMRGLCDAGRQDDAKKLMFDMEYQGCQTEAVNYGVLMSAYARQGDVDSVRGLLSDMR 293

Query: 543 QNGVEPDAYMFKVLIQAYC---------KYLSNSNL----MPDAATKELLKKSLWKEG 587
           +  + PD   + VLI+  C         K L    L    +P AAT  +L     + G
Sbjct: 294 KRKLGPDDASYNVLIKCLCDSGKVEEAHKALVEMQLKDGTVPSAATYRVLADGCCRAG 351



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 4/81 (4%)

Query: 483 YSSLLRTLTKCKRDFDAIN--VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           Y+ +L+ L  C RD  A    VL+EM+  G+ P V TF+ L+     +GD    ++L   
Sbjct: 164 YNIILKGL--CGRDGSAGARVVLDEMLGRGVRPTVVTFNTLVGAACQEGDVGAAEQLKEE 221

Query: 541 VRQNGVEPDAYMFKVLIQAYC 561
           + + GV P+A  + +L++  C
Sbjct: 222 MVRRGVSPNAVTYSLLMRGLC 242



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 13/119 (10%)

Query: 504 EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY 563
           EEM+  G+ P+  T+S LM      G +   +KL   +   G + +A  + VL+ AY + 
Sbjct: 220 EEMVRRGVSPNAVTYSLLMRGLCDAGRQDDAKKLMFDMEYQGCQTEAVNYGVLMSAYARQ 279

Query: 564 ------------LSNSNLMPDAATKELLKKSLWKEGRRKEA-AAVEERCEKINDVPSLA 609
                       +    L PD A+  +L K L   G+ +EA  A+ E   K   VPS A
Sbjct: 280 GDVDSVRGLLSDMRKRKLGPDDASYNVLIKCLCDSGKVEEAHKALVEMQLKDGTVPSAA 338


>gi|226499896|ref|NP_001150085.1| EMB2745 [Zea mays]
 gi|195636584|gb|ACG37760.1| EMB2745 [Zea mays]
 gi|414879767|tpg|DAA56898.1| TPA: EMB2745 [Zea mays]
          Length = 410

 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 103/238 (43%), Gaps = 43/238 (18%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G  H+V +   ++  L RH  ++   +L   +R +G+R    T  L+ID YG + K   A
Sbjct: 138 GVVHNVVSYNILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANA 197

Query: 461 LKAFHD-------------DRTLCG---------PISKFKLM---------LLYSSLLRT 489
           L  F+              +  +CG          +  F  M         + Y+ L+  
Sbjct: 198 LHFFNQMKAAGLPPSVVTYNELICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAA 257

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
             K      A  +L EM  +G+  DVQ++  L++   ++G     +KLF  +   GV+P+
Sbjct: 258 FAKENEMDRAFMMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDLKGVKPN 317

Query: 550 AYMFKVLIQAYCKYLSN------------SNLMPDAATKELLKKSLWKEGRRKEAAAV 595
           + ++ ++I  Y +  S+            + L+P+ A+  L  + L  EG+ +EA A+
Sbjct: 318 SVLYDMMIYGYGREGSSYKALRLIMEMRKNGLIPNVASYCLTIRLLCNEGKCQEAEAL 375



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 88/204 (43%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           V   L  A    SAL+++     + + + + +   AL  V  +S    E + +   +   
Sbjct: 8   VVRRLCVAAEVRSALAVLARGTKSGDAALDVAACTALVHVCCQSGDVAEARRVFDVMPRL 67

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
                 V +  L+  Y   G  E+  + + E R+     +  +YN ++  + +TG+   A
Sbjct: 68  GVAPNEVTYTALINGYFVRGHREMGFALFAEMRRDGVEPNLYTYNCLIGEWCRTGEFKSA 127

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
              F ++  +G + N  +Y ++I  L    KL  A+++F A+    I+ +   + +L++G
Sbjct: 128 RLLFDEMPVKGVVHNVVSYNILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDG 187

Query: 252 FVGVERFDEAKSLLNEMRDDGKFP 275
           +    +   A    N+M+  G  P
Sbjct: 188 YGKAGKMANALHFFNQMKAAGLPP 211



 Score = 42.7 bits (99), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 39/65 (60%)

Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           +A  V + M   G+ P+  T++ L+  + ++G  ++   LF+ +R++GVEP+ Y +  LI
Sbjct: 56  EARRVFDVMPRLGVAPNEVTYTALINGYFVRGHREMGFALFAEMRRDGVEPNLYTYNCLI 115

Query: 558 QAYCK 562
             +C+
Sbjct: 116 GEWCR 120



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 16/179 (8%)

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL 479
           GH E+   L A++R DG+     T   +I  +  + +  +A +   D+  + G +     
Sbjct: 87  GHREMGFALFAEMRRDGVEPNLYTYNCLIGEWCRTGEFKSA-RLLFDEMPVKGVVHN--- 142

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y+ L+  L +  +  DA+ + E M   GI P + TF+ L+  +   G        F+
Sbjct: 143 VVSYNILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFN 202

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKE 586
            ++  G+ P    +  LI  +C+             +    L P   T  +L  +  KE
Sbjct: 203 QMKAAGLPPSVVTYNELICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKE 261



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204
           +W  T G+ +     ++E   +  + +  SYNI+++   +  K  +AV+ F  +  EG  
Sbjct: 117 EWCRT-GEFKSARLLFDEMPVKGVVHNVVSYNILIAGLCRHSKLKDAVQLFEAMRREGIR 175

Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL 264
           P+  T+ ++I+     GK+ +AL  F+ +    +  +   Y  L+ GF  V     A   
Sbjct: 176 PSIVTFNLLIDGYGKAGKMANALHFFNQMKAAGLPPSVVTYNELICGFCRVRDIARAVRA 235

Query: 265 LNEMRDDGKFP 275
             +M++ G  P
Sbjct: 236 FLDMKERGLAP 246



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 44/102 (43%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           S  ++N+++  Y K GK   A+  F Q+   G  P+  TY  +I     +  +  A+  F
Sbjct: 177 SIVTFNLLIDGYGKAGKMANALHFFNQMKAAGLPPSVVTYNELICGFCRVRDIARAVRAF 236

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
             +    +  T   Y IL+  F      D A  +L+EM   G
Sbjct: 237 LDMKERGLAPTKVTYTILIAAFAKENEMDRAFMMLSEMEKAG 278



 Score = 40.4 bits (93), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 29/138 (21%), Positives = 55/138 (39%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F  L+  Y  +G +   L  +N+ +      S  +YN ++  + +      AV  F  
Sbjct: 179 VTFNLLIDGYGKAGKMANALHFFNQMKAAGLPPSVVTYNELICGFCRVRDIARAVRAFLD 238

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + + G  P   TYT++I       ++D A  + S +    ++   + Y +L+       +
Sbjct: 239 MKERGLAPTKVTYTILIAAFAKENEMDRAFMMLSEMEKAGLEVDVQSYGVLLHALCMEGK 298

Query: 258 FDEAKSLLNEMRDDGKFP 275
              A+ L   M   G  P
Sbjct: 299 MMHARKLFQSMDLKGVKP 316



 Score = 40.0 bits (92), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 29/138 (21%), Positives = 65/138 (47%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+  +    D+   +  + + ++R    +  +Y I+++ +AK  +   A     +
Sbjct: 214 VTYNELICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKENEMDRAFMMLSE 273

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G   + ++Y V++  L   GK+  A ++F ++ L  +K  S  Y +++ G+     
Sbjct: 274 MEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDLKGVKPNSVLYDMMIYGYGREGS 333

Query: 258 FDEAKSLLNEMRDDGKFP 275
             +A  L+ EMR +G  P
Sbjct: 334 SYKALRLIMEMRKNGLIP 351


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 80/178 (44%), Gaps = 1/178 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L++ +     +E  +  + E  QR  + +T +YNI++    + G    A E F++
Sbjct: 397 VTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKE 456

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++ +G  PN  TY  +++ L   GKL+ A+ VF  L   +++ T   Y I++EG     +
Sbjct: 457 MVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 516

Query: 258 FDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
            ++   L   +   G  P   A    +      G  + A+   +EM  D  + N   Y
Sbjct: 517 VEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCY 574



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 89/492 (18%), Positives = 192/492 (39%), Gaps = 24/492 (4%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D  +S+ E ++ N    HN  T   L     +  +      ++G +    +    V   +
Sbjct: 98  DVVISLGEQMQ-NLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSS 156

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  Y  S  +   ++  ++        +T ++N ++       K  EA+    +++ +G
Sbjct: 157 LLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKG 216

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  TY V++  L   G  D A  + + +   +++     Y  +++G    +  D+A 
Sbjct: 217 CQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDAL 276

Query: 263 SLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDD 321
           +L  EM   G  P      +L   +   G    A+  L +M+  K   +V  +    D  
Sbjct: 277 NLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAF 336

Query: 322 EDENDDNNSGVRIAYGVQLKPWLDPK-----------ALANTLDEWSPEVVSLLADAKF- 369
             E     +     Y   +K  +DP             + + LDE       +++   F 
Sbjct: 337 VKEGKLVEA--EKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFP 394

Query: 370 -VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRL 428
            V T   + K    +K  E     F  ++ Q G   +      ++  L + G  ++   +
Sbjct: 395 DVVTYNTLIKGFCKYKRVEEGMEVFREMS-QRGLVGNTVTYNILIQGLFQAGDCDMAQEI 453

Query: 429 IAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF-HDDRTLCGPISKFKLMLLYSSLL 487
             ++ SDG+     T   ++D    + K + A+  F +  R+   P      +  Y+ ++
Sbjct: 454 FKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPT-----IYTYNIMI 508

Query: 488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE 547
             + K  +  D  ++   +   G+ PDV  ++ ++  F  +G ++    LF  ++++G  
Sbjct: 509 EGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTL 568

Query: 548 PDAYMFKVLIQA 559
           P++  +  LI+A
Sbjct: 569 PNSGCYNTLIRA 580



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 74/142 (52%), Gaps = 14/142 (9%)

Query: 424 LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL---M 480
           L+DR++AK    G +    T  ++++  G+ K+ D  L AF+    L   + + KL   +
Sbjct: 208 LIDRMVAK----GCQPDLVTYGVVVN--GLCKRGDTDL-AFN----LLNKMEQGKLEPGV 256

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           L+Y++++  L K K   DA+N+ +EM   GI P+V T+S L+      G      +L S 
Sbjct: 257 LIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSD 316

Query: 541 VRQNGVEPDAYMFKVLIQAYCK 562
           + +  + PD + F  LI A+ K
Sbjct: 317 MIERKINPDVFTFSALIDAFVK 338



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 82/207 (39%), Gaps = 16/207 (7%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D+     ++  L + G  +L   L+ K+    +         IID     K  D A
Sbjct: 216 GCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDA 275

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           L  F +  T          ++ YSSL+  L    R  DA  +L +MI   I PDV TFS 
Sbjct: 276 LNLFKEMETK----GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSA 331

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSN 568
           L+  F  +G     +KL+  + +  ++P    +  LI  +C            +++ + +
Sbjct: 332 LIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKH 391

Query: 569 LMPDAATKELLKKSLWKEGRRKEAAAV 595
             PD  T   L K   K  R +E   V
Sbjct: 392 CFPDVVTYNTLIKGFCKYKRVEEGMEV 418



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/487 (16%), Positives = 190/487 (39%), Gaps = 52/487 (10%)

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L G++  S+     + F  L+   +     ++V+S   + +      +  +Y+I+++ + 
Sbjct: 68  LFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFC 127

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           +  +   A+    +++  G  PN  T + ++    +  ++  A+ +   + +   +  + 
Sbjct: 128 RRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTV 187

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
            +  L+ G     +  EA +L++ M   G  P      V +  + + G    A   L +M
Sbjct: 188 TFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKM 247

Query: 303 LPDKRIKNVRYYE---DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPE 359
              K    V  Y    DG    +  +D           + L   ++ K +   +  +S  
Sbjct: 248 EQGKLEPGVLIYNTIIDGLCKYKHMDD----------ALNLFKEMETKGIRPNVVTYSSL 297

Query: 360 VVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH 419
           +  L    ++   +RL+  ++    +P                  DV+    ++    + 
Sbjct: 298 ISCLCNYGRWSDASRLLSDMIERKINP------------------DVFTFSALIDAFVKE 339

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK--F 477
           G +   ++L  ++    +     T   +I+ + +  + D A + F         +SK  F
Sbjct: 340 GKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFE------FMVSKHCF 393

Query: 478 KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL 537
             ++ Y++L++   K KR  + + V  EM   G+V +  T++ L+      GD  + Q++
Sbjct: 394 PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEI 453

Query: 538 FSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWK 585
           F  +  +GV P+   +  L+   CK            YL  S + P   T  ++ + + K
Sbjct: 454 FKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCK 513

Query: 586 EGRRKEA 592
            G+ ++ 
Sbjct: 514 AGKVEDG 520



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 40/205 (19%), Positives = 83/205 (40%), Gaps = 16/205 (7%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G  H+ Y    ++    R   + L   ++ K+   G      T+  +++ Y  SK+   A
Sbjct: 111 GIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEA 170

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           + A  D   + G        + +++L+  L    +  +A+ +++ M+  G  PD+ T+  
Sbjct: 171 V-ALVDQMFVTGYQPN---TVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGV 226

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSN 568
           ++     +GD  +   L + + Q  +EP   ++  +I   CKY            +    
Sbjct: 227 VVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKG 286

Query: 569 LMPDAATKELLKKSLWKEGRRKEAA 593
           + P+  T   L   L   GR  +A+
Sbjct: 287 IRPNVVTYSSLISCLCNYGRWSDAS 311



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 85/204 (41%), Gaps = 1/204 (0%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           +   L    + D AL++ + +++      N  T  +L + L    R  +   L+ D+   
Sbjct: 262 IIDGLCKYKHMDDALNLFKEMETK-GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIER 320

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
           K       F  L+  +   G L      ++E  +R+   S  +Y+ +++ +    +  EA
Sbjct: 321 KINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEA 380

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
            + F  ++ +   P+  TY  +I+      +++  +EVF  +    +   +  Y IL++G
Sbjct: 381 KQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQG 440

Query: 252 FVGVERFDEAKSLLNEMRDDGKFP 275
                  D A+ +  EM  DG  P
Sbjct: 441 LFQAGDCDMAQEIFKEMVSDGVPP 464


>gi|356523566|ref|XP_003530408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g47360-like [Glycine max]
          Length = 475

 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 99/227 (43%), Gaps = 18/227 (7%)

Query: 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR 445
           P+    FF W  +Q GY H  Y   K   +L  H + +++  +I    ++G  +  +  R
Sbjct: 71  PQLGVRFFVWAGFQSGYRHSSYMYTKASYLLRIHHNPQIIRDVIESYEAEGSLVTVNMFR 130

Query: 446 LIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD-AINVLE 504
            ++     ++ AD AL      R +    +     ++Y+ ++R   K K D + A+ +  
Sbjct: 131 EVLKLCKEAQLADMALWVL---RKMEDTFNLHADTVMYNLVIRLCCK-KGDIETALKLTS 186

Query: 505 EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYL 564
           EM  +G+ PD+ T+  ++  F+  G  +    +  ++R +G  P+  +   ++  +C+  
Sbjct: 187 EMSSNGLCPDLITYMAIVEGFSNAGRSEEAYSVLKVMRLHGCSPNLVILSAILDGFCRSG 246

Query: 565 SNSNLM-------------PDAATKELLKKSLWKEGRRKEAAAVEER 598
           S    +             P+  T   + +S  K G+ KEA  + +R
Sbjct: 247 SMERALELLDEMEKGGVCTPNVVTYTSVIQSFCKRGQWKEALDILDR 293



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 6/104 (5%)

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
           T  YN+V+ +  K G    A++   ++   G  P+  TY  ++E   N G+ +   E +S
Sbjct: 162 TVMYNLVIRLCCKKGDIETALKLTSEMSSNGLCPDLITYMAIVEGFSNAGRSE---EAYS 218

Query: 232 ALPLMRIKRTSKQYLIL---VEGFVGVERFDEAKSLLNEMRDDG 272
            L +MR+   S   +IL   ++GF      + A  LL+EM   G
Sbjct: 219 VLKVMRLHGCSPNLVILSAILDGFCRSGSMERALELLDEMEKGG 262


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 70/164 (42%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L + ++  E + L   +   +     V +  L+     +  +E     + E   +  + +
Sbjct: 159 LCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPT 218

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
             SYN ++  + K      A + F +++    +PN  TYT +I+ L   GK+ +A EV  
Sbjct: 219 EVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLD 278

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            +    +      Y  L++GF  V R DEA  LL +M   G  P
Sbjct: 279 GMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAP 322



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 75/364 (20%), Positives = 139/364 (38%), Gaps = 39/364 (10%)

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
           IP + T+  + +     G+L+   EV+  +        +  Y IL+     V  FDEA  
Sbjct: 7   IPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYK 66

Query: 264 LLNEMRDDGKFPGRAMRVA--LERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDD 321
           LL+ MR   +F  +A+  +  +  + ++  ++ A E + +M         RY    +   
Sbjct: 67  LLHTMRLK-RFKRKAIAYSTIINWLCKLNRVEEARELIEKM--------ARYAPPDA--- 114

Query: 322 EDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLR 381
                       + YG  ++     K + + L          +    F++    V   L 
Sbjct: 115 ------------LTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYN--FVLSGLC 160

Query: 382 HFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPF 441
             +  E A   F  +  Q     +V     ++  L +   +E    L  ++   G     
Sbjct: 161 QEEKVEEARLLFEKMVKQR-INPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTE 219

Query: 442 STIRLIIDFYGISKKAD-AALKAFHDD--RTLCGPISKFKLMLLYSSLLRTLTKCKRDFD 498
            +   +ID  G  KK D  A K   D   R+ C P      ++ Y++L+  L+K  +   
Sbjct: 220 VSYNTLID--GFCKKKDLVAAKDVFDKMVRSNCVPN-----VVTYTTLIDGLSKSGKVQA 272

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A  VL+ M+  G+ P+V T+S L+  F          KL   +   G+ P    + +L+ 
Sbjct: 273 AAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLN 332

Query: 559 AYCK 562
           + C+
Sbjct: 333 SLCR 336



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/174 (20%), Positives = 74/174 (42%), Gaps = 4/174 (2%)

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
           NPN      T + L   L K+ R      L  +++   ++   V++  L+  +    DL 
Sbjct: 181 NPNVV----TYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLV 236

Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
                +++  +   + +  +Y  ++   +K+GK   A E    ++ +G  PN  TY+ +I
Sbjct: 237 AAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLI 296

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           +    + ++D A ++   +    I  T   Y IL+      ++ ++A  L   M
Sbjct: 297 DGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGM 350



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 1/171 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+   S SG ++      +   ++    +  +Y+ ++  + K  +  EA +   Q
Sbjct: 255 VTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQ 314

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++ +G  P   TY +++  L    KL+ A ++F  +   R   T   Y  L+      ++
Sbjct: 315 MVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQ 374

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVALE-RMQEMGFIQGANEFLREMLPDKR 307
            D A  L  EM   G  P       L   +   G +  A E + +M   KR
Sbjct: 375 LDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLTKR 425


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 1/173 (0%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  Y  S  ++   S   E   +A    T +Y+ +M    + G+  EA+  F+++   G
Sbjct: 379 LINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYG 438

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             PN  TY ++++     G LD AL++  ++   +++     Y IL+EG     + + AK
Sbjct: 439 PHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAK 498

Query: 263 SLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
            L +++  DG  P  R   V ++ + + G    A +  R+M  D  + N   Y
Sbjct: 499 ELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSY 551



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 78/163 (47%)

Query: 113 AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
            KS+R  E K+L+ ++        +V +  LMQ     G  +  L+ + E        + 
Sbjct: 384 CKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNL 443

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            +Y I++  + K G   EA++  + + ++   PN   YT++IE +   GKL+ A E+FS 
Sbjct: 444 VTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSK 503

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           L     +   + Y ++++G +     DEA  L  +M DDG  P
Sbjct: 504 LFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLP 546



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 75/170 (44%)

Query: 99  SHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLS 158
           +HN  +L+ L   L +        +++G +        ++ F  L+      G ++  + 
Sbjct: 125 THNVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVE 184

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
            +NE  +R    +  SY  V++   KTG    AV+ F+++   G  PN  TY+ +I+ L 
Sbjct: 185 LFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLC 244

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
               ++ A+E  S +    I      Y  +V GF  + + +EA  L  EM
Sbjct: 245 KDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEM 294



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 12/103 (11%)

Query: 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           V E M   G+ PD+ T++ LM  + LQ      +K+F ++ + G  P A+ + +LI  YC
Sbjct: 325 VFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYC 384

Query: 562 KY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           K             + +  L PD  T   L + L + GR KEA
Sbjct: 385 KSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEA 427



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/214 (21%), Positives = 88/214 (41%), Gaps = 30/214 (14%)

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALK 462
           TH+VY+L  ++  L R  HV+    ++ K+   G+     T   +I+      K   A++
Sbjct: 125 THNVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVE 184

Query: 463 AF-------HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
            F       H+   +            Y++++  L K      A++V ++M  +G  P+V
Sbjct: 185 LFNEMVKRGHEPNVIS-----------YTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNV 233

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KY 563
            T+S ++             +  S + + G+ P+ + +  ++  +C            K 
Sbjct: 234 VTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKE 293

Query: 564 LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
           +   ++MP+  T  +L   L KEG   EA  V E
Sbjct: 294 MVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFE 327



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 1/145 (0%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
              SYNI+++ Y K+ +  EA     ++  +   P++ TY+ +++ L  LG+   AL +F
Sbjct: 372 GAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLF 431

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA-MRVALERMQEM 289
             +           Y+IL++GF      DEA  LL  M++    P      + +E M   
Sbjct: 432 KEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIA 491

Query: 290 GFIQGANEFLREMLPDKRIKNVRYY 314
           G ++ A E   ++  D    ++R Y
Sbjct: 492 GKLEVAKELFSKLFGDGTRPDIRTY 516



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 6/166 (3%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V ++ L+  +   G L+  L      +++    +   Y I++      GK   A E F +
Sbjct: 444 VTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSK 503

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +  +G  P+ RTYTVMI+ L+  G  D A ++F  +        S  Y ++++GF+  + 
Sbjct: 504 LFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQD 563

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREML 303
              A  L++EM       G+   V L   Q +  ++  +E + + +
Sbjct: 564 SSTAIRLIDEMV------GKRFSVNLSTFQMLLDLESQDEIISQFM 603



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 58/129 (44%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           + +++  +   G L      + E   R  + +T ++ I++    K G   EA   F  + 
Sbjct: 271 YNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMT 330

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           ++G  P+  TY  +++       ++ A +VF  +        +  Y IL+ G+    R D
Sbjct: 331 EKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMD 390

Query: 260 EAKSLLNEM 268
           EAKSLL EM
Sbjct: 391 EAKSLLAEM 399



 Score = 46.6 bits (109), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 50/103 (48%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN ++  +   G+  EA   F++++    +PN+ T+T++++ L   G +  A  VF  +
Sbjct: 270 TYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETM 329

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
               ++     Y  L++G+      +EAK +   M   G  PG
Sbjct: 330 TEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPG 372



 Score = 46.6 bits (109), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 6/149 (4%)

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPI 474
           L + G V     +   +   G+    ST   ++D Y + +  + A K F    R  C P 
Sbjct: 313 LCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPG 372

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
           +       Y+ L+    K +R  +A ++L EM    + PD  T+S LM      G  K  
Sbjct: 373 AH-----SYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEA 427

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCKY 563
             LF  +   G  P+   + +L+  +CK+
Sbjct: 428 LNLFKEMCSYGPHPNLVTYVILLDGFCKH 456



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 14/123 (11%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS+L++ L +  R  +A+N+ +EM   G  P++ T+  L+  F   G      KL   ++
Sbjct: 411 YSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMK 470

Query: 543 QNGVEPDAYMFKVLIQA-------------YCKYLSNSNLMPDAATKELLKKSLWKEGRR 589
           +  +EP+   + +LI+              + K   +    PD  T  ++ K L KEG  
Sbjct: 471 EKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGT-RPDIRTYTVMIKGLLKEGLS 529

Query: 590 KEA 592
            EA
Sbjct: 530 DEA 532



 Score = 43.1 bits (100), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 32/161 (19%), Positives = 70/161 (43%), Gaps = 4/161 (2%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G+  +V +   ++  L + G+  +   +  K+  +G +    T   IID     +  + A
Sbjct: 193 GHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDA 252

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           ++   +      P + F     Y+S++       +  +A  + +EM+   ++P+  TF+ 
Sbjct: 253 MEFLSEMVERGIPPNVFT----YNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTI 308

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           L+     +G     + +F  + + GVEPD   +  L+  YC
Sbjct: 309 LVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYC 349


>gi|413949009|gb|AFW81658.1| hypothetical protein ZEAMMB73_233967 [Zea mays]
          Length = 637

 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 89/210 (42%), Gaps = 3/210 (1%)

Query: 67  LDPF-IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           +D F +   +  +A    +A+ + E ++ N  F     + + L   LA      E + + 
Sbjct: 260 MDAFKVAIKSFAAAGEIKNAVGVFELMRKN-GFDDGVESFNCLLVALANEGLGREARQVF 318

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
            D    ++     ++  LM  +  + +L      WNE  ++        +N ++    + 
Sbjct: 319 -DKMLGQYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMKPDVVVHNTMIEGLLRG 377

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
            +  EAV+ F  +  +G  PN  TYT++I +    GK+D A+E F  +   R +     Y
Sbjct: 378 QRQHEAVKMFELMKAKGPPPNVWTYTMLICNHCKRGKMDMAMECFEEMQEARCQPDVATY 437

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             L+ G+   +R D   ++L EM   G  P
Sbjct: 438 TCLLVGYGNAKRMDRVTAVLEEMTQKGCPP 467


>gi|255645425|gb|ACU23208.1| unknown [Glycine max]
          Length = 177

 Score = 62.4 bits (150), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 55/101 (54%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           +N V++ Y+K G+  +AVE  R +   G  P+  TYTV+     N G+++ A ++ + + 
Sbjct: 13  FNFVVTAYSKAGEMGKAVEMMRLMESRGLRPDVYTYTVLASAYSNGGEMEEAQKILAEVK 72

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               K     +  L+ G+  +E+FDEA  LL EM+D G  P
Sbjct: 73  KKHAKLGPVMFHTLIRGYCKLEQFDEALKLLAEMKDYGVHP 113


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 22/234 (9%)

Query: 57  SLSSLLNDRLL-------DPFIVTHALRSAPNADSAL--SIMEALKSNPNFSHNQSTLHA 107
           SLSSL  D L+        P+       +AP  +  L  +I+  L  +   SH +  L+ 
Sbjct: 24  SLSSLTPDSLITTVLNCRSPWKALEFFNAAPEKNIQLYSAIIHVLVGSKLLSHARYLLND 83

Query: 108 LATVLAKSQRNHELKTL----IGDISSSKFL-NVSVNFMNLMQWYSTSGDLELVLSTWNE 162
           L   L KS + +    L    +  + SSKF  NV    + ++        +ELV    + 
Sbjct: 84  LVQNLVKSHKPYHACQLAFSELSRLKSSKFTPNVYGELIIVL------CKMELVEEALSM 137

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAV-ETFRQVIDEGAIPNSRTYTVMIEHLVNLG 221
           Y +    L+ ++ N+++ V  KTG+ FE +   + ++I  G  P+  T+  +I+     G
Sbjct: 138 YHKVGAALTIQACNVLLYVLVKTGR-FELLWRIYEEMISNGLSPSVITFGTLIDGCCRQG 196

Query: 222 KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            L  A E+F  + +  I  T   Y IL+ G     + +EA+S+   MR+ G +P
Sbjct: 197 DLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYP 250



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS L+R L    R  +A N+ E+M   GI+ +  T++ L+     +G      ++ S + 
Sbjct: 360 YSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMT 419

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
           +NGVEP+   F  LI  YCK             +   +L PD  T   +     K G  K
Sbjct: 420 ENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMK 479

Query: 591 EA 592
           EA
Sbjct: 480 EA 481



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 99/249 (39%), Gaps = 47/249 (18%)

Query: 398 YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA 457
           ++ G    + A   +L +L + G  EL+ R+  ++ S+G+     T   +ID  G  ++ 
Sbjct: 139 HKVGAALTIQACNVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLID--GCCRQG 196

Query: 458 DA--ALKAFHDDRT----------------LCG---------------PISKFKLMLLYS 484
           D   A + F + R                 LC                 +  +  +  Y+
Sbjct: 197 DLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYN 256

Query: 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544
           +L+    K      A+ + ++M+  G+VPDV TF  L+      G+ K  + LF  + + 
Sbjct: 257 TLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKF 316

Query: 545 GVEPDAYMFKVLIQAYCKYLSNSNLM------------PDAATKELLKKSLWKEGRRKEA 592
            V P+  ++  LI AYCK    S  M            PD  T  +L + L    R +EA
Sbjct: 317 SVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEA 376

Query: 593 AAVEERCEK 601
             + E+  K
Sbjct: 377 GNIFEKMTK 385



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/228 (19%), Positives = 92/228 (40%), Gaps = 14/228 (6%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+   L S    + A +I E + +      N  T ++L     K  +  +   +   ++ 
Sbjct: 362 ILIRGLCSVSRTEEAGNIFEKM-TKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTE 420

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           +      + F  L+  Y    +L+  +  ++E   ++      +Y  ++  + K G   E
Sbjct: 421 NGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKE 480

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQ------ 244
           A++ +  ++D G  PN  T + +++ L   GK+  ALE+F+     +  R +        
Sbjct: 481 ALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKP 540

Query: 245 -------YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER 285
                  Y  L+ G     +F +A  L ++MR  G  P   + V + R
Sbjct: 541 SLTNHVAYTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEVIYVVMLR 588



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 63/134 (47%), Gaps = 1/134 (0%)

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
           N++V + +L+  Y   GD+   ++ + E  +        +Y+I++       +  EA   
Sbjct: 321 NIAV-YNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNI 379

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
           F ++  EG + NS TY  +I+     GK+D ALE+ S +    ++     +  L++G+  
Sbjct: 380 FEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCK 439

Query: 255 VERFDEAKSLLNEM 268
           +     A  + +EM
Sbjct: 440 IRNLQAAMGIYSEM 453



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 66/143 (46%), Gaps = 1/143 (0%)

Query: 160 WNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219
           + +  +   L ++ +YN ++    K GK  +A+E   Q+ + G  PN  T++ +I+    
Sbjct: 380 FEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCK 439

Query: 220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RA 278
           +  L +A+ ++S + +  +      Y  +++G        EA  L ++M D+G  P    
Sbjct: 440 IRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYT 499

Query: 279 MRVALERMQEMGFIQGANEFLRE 301
           +   L+ + + G I  A E   E
Sbjct: 500 ISCLLDGLCKDGKISDALELFTE 522



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 10/161 (6%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           DV+    ++  L      E    +  K+  +G+     T   +ID      K D AL+  
Sbjct: 356 DVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALE-- 413

Query: 465 HDDRTLCGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL 521
                +C  +++  +   ++ +S+L+    K +    A+ +  EM+   + PDV T++ +
Sbjct: 414 -----ICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAM 468

Query: 522 MYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           +      G  K   KL+S +  NG+ P+ Y    L+   CK
Sbjct: 469 IDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCK 509



 Score = 43.5 bits (101), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 22/96 (22%), Positives = 47/96 (48%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN +M  Y K     +A+  ++ ++ EG +P+  T+ ++I+ L   G++ +A  +F  +
Sbjct: 254 TYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNM 313

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
               +      Y  L++ +  V    EA +L  E+ 
Sbjct: 314 IKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELE 349



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 49/101 (48%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YN ++  Y K G   EA+  F ++      P+  TY+++I  L ++ + + A  +F  + 
Sbjct: 325 YNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMT 384

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              I   S  Y  L++G     + D+A  + ++M ++G  P
Sbjct: 385 KEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEP 425



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/133 (21%), Positives = 53/133 (39%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  LM  Y    + +  L  + +      +    ++ I++    K G+   A   F  +I
Sbjct: 255 YNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMI 314

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
                PN   Y  +I+    +G +  A+ +F  L    +      Y IL+ G   V R +
Sbjct: 315 KFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTE 374

Query: 260 EAKSLLNEMRDDG 272
           EA ++  +M  +G
Sbjct: 375 EAGNIFEKMTKEG 387


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 64/138 (46%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+    ++G LE  L   ++ ++   L +  +Y+I++  +AK+G    A ET+ +
Sbjct: 350 VAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNR 409

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +I  G  PN  TYT M++ L      D A  +   + L      +  +   ++G  G  R
Sbjct: 410 MISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGR 469

Query: 258 FDEAKSLLNEMRDDGKFP 275
            + A  LL  M+  G  P
Sbjct: 470 VEWAMKLLERMQGHGCLP 487



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 8/189 (4%)

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           V K L+  ++  +   FF  +A    + H       M+  L R   +++V  ++ +++ D
Sbjct: 44  VLKRLKTDRNLSSVLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMD 103

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCK 494
           G+         II+ Y     A+ ALK F+      C P  +     +Y+ LL  L   +
Sbjct: 104 GINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVR-----IYNHLLDALLS-E 157

Query: 495 RDFDAINVL-EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
             F  IN L   M   G++P+V T++ L+             KLF  +   G  PDA  +
Sbjct: 158 NKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTY 217

Query: 554 KVLIQAYCK 562
             ++ + CK
Sbjct: 218 TTMVSSLCK 226



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 99/503 (19%), Positives = 191/503 (37%), Gaps = 49/503 (9%)

Query: 65  RLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTL 124
           +LL    V   L++  N  S L    A+ ++  F H  ST   +   L +      ++ +
Sbjct: 37  QLLQESDVLKRLKTDRNLSSVLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYI 96

Query: 125 IGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK 184
           +  +           F+ ++  Y   G  E  L  +    +     +   YN ++     
Sbjct: 97  LQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLS 156

Query: 185 TGKNFEAVET-FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
             K F+ +   +  +  +G IPN  TY ++++ L    ++D+A ++F  +        + 
Sbjct: 157 ENK-FQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAV 215

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKF-PGRAMRVAL-ERMQEMGFIQGANEFLRE 301
            Y  +V       + D+A+ L       G+F P   +  AL + M + G I+ A + L E
Sbjct: 216 TYTTMVSSLCKAGKIDDARELA------GRFKPSVPVYNALIDGMCKEGRIEVAIKLLGE 269

Query: 302 MLPDKRIKNVRYYEDGSDDDEDENDDNNSG-VRIAYGVQLKPWLDPKALANTLDEWSPEV 360
           M+ +    NV  Y          N    SG V +A+ +  + +L  +     +  ++P +
Sbjct: 270 MMDNGVDPNVVSYSC------IINSLCVSGNVELAFALFAQMFL--RGCDANIHTFTPLI 321

Query: 361 VSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHG 420
                  K      L              W        Q G   +V A   ++  L  +G
Sbjct: 322 KGCFMRGKLYEALDL--------------WKLM----IQDGCEPNVVAYNTLIHGLCSNG 363

Query: 421 HVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL---CGPISKF 477
            +E   ++  +++  G     +T  ++ID  G +K  D    +   +R +   C P    
Sbjct: 364 SLEEALQVCDQMQRSGCLPNVTTYSILID--GFAKSGDLVGASETWNRMISHGCRPN--- 418

Query: 478 KLMLLYSSLLRTLTKCKRDFDAINVL-EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
             ++ Y+ ++  L K    FD  N L E+M   G  P+  TF+  +      G  +   K
Sbjct: 419 --VVTYTCMVDVLCK-NSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMK 475

Query: 537 LFSMVRQNGVEPDAYMFKVLIQA 559
           L   ++ +G  P+   +  L+ A
Sbjct: 476 LLERMQGHGCLPNITTYNELLDA 498



 Score = 46.2 bits (108), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 52/253 (20%), Positives = 102/253 (40%), Gaps = 25/253 (9%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           +++H  R  PN  +   +++ L  N  F    S +  + T+   +       T I  +  
Sbjct: 410 MISHGCR--PNVVTYTCMVDVLCKNSMFDQANSLVEKM-TLEGCTPNTMTFNTFIKGLCG 466

Query: 131 SKFLNVSVNFMNLMQWY------STSGDLELVLSTWNEYRQRAKLL----------STES 174
           +  +  ++  +  MQ +      +T  +L   L   N+Y +   L           +  +
Sbjct: 467 NGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVT 526

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YN V+  +++ G   EA++ F + +  G  P+S TY  MI      GK+  A ++   + 
Sbjct: 527 YNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVS 586

Query: 235 LMRIKRTS-KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA-----MRVALERMQE 288
            M+        Y  L+ G       +EA + L++  + G  P  A     +R   + +  
Sbjct: 587 SMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCFFDSLGH 646

Query: 289 MGFIQGANEFLRE 301
           MG I   ++ LR+
Sbjct: 647 MGPIHILDDILRK 659



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 90/223 (40%), Gaps = 22/223 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   +V +   ++  L   G+VEL   L A++   G      T   +I    +  K   A
Sbjct: 274 GVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEA 333

Query: 461 L---KAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
           L   K    D   C P      ++ Y++L+  L       +A+ V ++M  SG +P+V T
Sbjct: 334 LDLWKLMIQDG--CEPN-----VVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTT 386

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLS 565
           +S L+  FA  GD     + ++ +  +G  P+   +  ++   CK             ++
Sbjct: 387 YSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMT 446

Query: 566 NSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
                P+  T     K L   GR + A  + ER +    +P++
Sbjct: 447 LEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNI 489



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 46/222 (20%), Positives = 95/222 (42%), Gaps = 25/222 (11%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   +V+    +L  L ++  V+   +L  ++ + G      T   ++     + K D  
Sbjct: 174 GLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKID-- 231

Query: 461 LKAFHDDRTLCGPISKFKLML-LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
                D R L G   +FK  + +Y++L+  + K  R   AI +L EM+ +G+ P+V ++S
Sbjct: 232 -----DARELAG---RFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYS 283

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC-------------KYLSN 566
            ++    + G+ ++   LF+ +   G + + + F  LI+  C             K +  
Sbjct: 284 CIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKG-CFMRGKLYEALDLWKLMIQ 342

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
               P+      L   L   G  +EA  V ++ ++   +P++
Sbjct: 343 DGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNV 384



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 34/163 (20%), Positives = 69/163 (42%), Gaps = 6/163 (3%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   +V     M+ +L ++   +  + L+ K+  +G      T    I     + + + A
Sbjct: 414 GCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWA 473

Query: 461 LKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           +K     +   C P      +  Y+ LL  L +  +  +A  + +E+    + P++ T++
Sbjct: 474 MKLLERMQGHGCLPN-----ITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYN 528

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            ++Y F+  G      +LF      G  PD+  +  +I AYCK
Sbjct: 529 TVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCK 571


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 55/102 (53%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SY I++   AK GK  EA + F++++D G  P++ TY V+I  +     LD ALE+F ++
Sbjct: 187 SYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSM 246

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                + +   + IL++      + DEA  LL  M DDG  P
Sbjct: 247 RSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVP 288



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 75/164 (45%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           LAK+ + +E   L   +  S     +V +  ++     +  L+  L  +   R +    S
Sbjct: 195 LAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPS 254

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
             ++NI++  + K GK  EA    +++ D+G +P+  TY+ +I  L ++ ++D A  +  
Sbjct: 255 RFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLE 314

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            +   + K T      L+ G     R  EA+ +L+ M   G+ P
Sbjct: 315 DMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSP 358



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 99/485 (20%), Positives = 181/485 (37%), Gaps = 43/485 (8%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  +M     S  +E  L  +NE  +     +  S+N ++    +  K  +A + F +
Sbjct: 116 VTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHE 175

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +  +   P+S +Y ++I+ L   GKL+ A ++F  +    I  ++  Y +++ G      
Sbjct: 176 MEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYT 235

Query: 258 FDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
            DEA  L   MR  G  P R    + ++   + G +  A   L+ M  D  + +V  Y  
Sbjct: 236 LDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYST 295

Query: 317 --GSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTR 374
                      DD    +      Q KP +      NTL      +  L    +      
Sbjct: 296 LISGLCSIARVDDARHLLEDMVKRQCKPTV---VTQNTL------IHGLCKAGRIKEARE 346

Query: 375 LVCKVLRHFKSPE-----TAWHFFCWVAYQP------------GYTHDVYALEKMLTILA 417
           ++  ++   +SP+     T  H  C                  G   +V     +++ L 
Sbjct: 347 VLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLC 406

Query: 418 RHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKF 477
           +   +     + A+++S G      T   +I  +  + + D  LK F +   +C  IS  
Sbjct: 407 KANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGE--MVCAGISPD 464

Query: 478 KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG--DEKIVQ 535
              ++Y +L   L K  R   A+ +L E   S      + +   +Y FA+ G  +   ++
Sbjct: 465 H--VVYGTLAAELCKSGRSARALEILREGRES---LRSEAWGDEVYRFAVDGLLEAGKME 519

Query: 536 KLFSMVR---QNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                VR   + G  P       L+   CK  S       A  +E++  +   + R K A
Sbjct: 520 MALGFVRDMVRGGQLPAPERCASLVAGLCK--SGQGGEARAVLEEIMDLAYGGKARGKAA 577

Query: 593 AAVEE 597
             VEE
Sbjct: 578 KFVEE 582



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 63/301 (20%), Positives = 120/301 (39%), Gaps = 27/301 (8%)

Query: 16  FTQLQTRSFVRAPFTNKLAL--YLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVT 73
           F  ++++    + FT  + +  + +R +L ++ RL  R      +          P +VT
Sbjct: 243 FKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHV----------PDVVT 292

Query: 74  H-----ALRSAPNADSALSIMEAL---KSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           +      L S    D A  ++E +   +  P      + +H L     K+ R  E + ++
Sbjct: 293 YSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLC----KAGRIKEAREVL 348

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
             + SS      V +  L+  +  +G  E      ++   R    +  +Y  ++S   K 
Sbjct: 349 DAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKA 408

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
            +  EA   F Q+   G  PN  TYT +I    + G++D  L++F  +    I      Y
Sbjct: 409 NRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVY 468

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGK---FPGRAMRVALERMQEMGFIQGANEFLREM 302
             L        R   A  +L E R+  +   +     R A++ + E G ++ A  F+R+M
Sbjct: 469 GTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDM 528

Query: 303 L 303
           +
Sbjct: 529 V 529



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 79/196 (40%), Gaps = 22/196 (11%)

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA---LKAFHDDRTLCGPISKFKLMLLYS 484
           L   +RS G R    T  ++ID +    K D A   LK   DD            ++ YS
Sbjct: 242 LFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDD-------GHVPDVVTYS 294

Query: 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544
           +L+  L    R  DA ++LE+M+     P V T + L++     G  K  +++   +  +
Sbjct: 295 TLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSS 354

Query: 545 GVEPDAYMFKVLIQAYCK---------YLSN---SNLMPDAATKELLKKSLWKEGRRKEA 592
           G  PD   +  L+  +C+          LS+     L P+  T   L   L K  R  EA
Sbjct: 355 GQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEA 414

Query: 593 AAVEERCEKINDVPSL 608
             V  + +     P+L
Sbjct: 415 CGVFAQMKSSGCAPNL 430



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/172 (18%), Positives = 79/172 (45%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
           N S +  +   L   LAK+ + ++ + L   +  S     +V + +L+     +   +  
Sbjct: 5   NVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDA 64

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
              + +  +R    S  +YN+++    K G   EA +  +++I++G +P+  TY  +++ 
Sbjct: 65  RELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDG 124

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           L    +++ AL +F+ +  +      + +  ++ G     + D+A  + +EM
Sbjct: 125 LCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEM 176



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 12/137 (8%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y  L+  L K  +  DA N+ ++++ SG+ P    ++ L++   +       ++LF+ + 
Sbjct: 13  YGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMN 72

Query: 543 QNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRK 590
           + G  P    + V+I A C            K +     +PD  T   +   L K  R +
Sbjct: 73  RRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVE 132

Query: 591 EAAAVEERCEKINDVPS 607
           EA  +    E++   P+
Sbjct: 133 EALLLFNEMERLGCTPN 149



 Score = 45.8 bits (107), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 78/206 (37%), Gaps = 16/206 (7%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           + G+  DV     ++  L +   VE    L  ++   G      +   II       K D
Sbjct: 108 EDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKID 167

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
            A + FH+      P   +     Y  L+  L K  +  +A  + + M+ SGI P   T+
Sbjct: 168 QACQVFHEMEAKDIPPDSWS----YGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTY 223

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSN 566
           + +++   L        +LF  +R  G  P  + F +LI A+C            K +++
Sbjct: 224 NVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTD 283

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEA 592
              +PD  T   L   L    R  +A
Sbjct: 284 DGHVPDVVTYSTLISGLCSIARVDDA 309


>gi|297841875|ref|XP_002888819.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334660|gb|EFH65078.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 512

 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 4/165 (2%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           F +L+    +   L   L  +   +     L   +YN ++  Y  + +  +A +T  ++ 
Sbjct: 307 FCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAFKTVDEMR 366

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
            +G  PN+RTY +++ HL+ + +   A EV+     M  + T   Y I+V  F   ER D
Sbjct: 367 SKGIGPNARTYDIILHHLIRMQRTKEAYEVYQK---MSCEPTVSTYEIMVRMFCNKERLD 423

Query: 260 EAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREML 303
            A  + +EM+  G  PG  M  +L   +     +  A E+  EML
Sbjct: 424 MAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEML 468



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 93/207 (44%), Gaps = 10/207 (4%)

Query: 359 EVVSLLADAKFVWTTRLVCKVLRHFKSPET-AWHFFCWVAYQPGYTHDVYALEKMLTILA 417
           +V +LL +A    +  L+ +VL+   +    A   F W   Q G+ H       ++  L 
Sbjct: 82  KVETLLNEASVKLSPALIEEVLKKLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESLG 141

Query: 418 RHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH--DDRTLCGPIS 475
           +    +L+  L+  ++   + L   T  LI   Y  ++K   A+ AFH  +D       S
Sbjct: 142 KIKQFKLIWNLVDDMKQKKL-LSKDTFALISRRYARARKVKEAITAFHKMEDYGFKMESS 200

Query: 476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ 535
            F  ML        L+K +   DA  V ++M      PD+++++ L+  +  + +   V 
Sbjct: 201 DFNRML------DILSKSRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQELNLLRVN 254

Query: 536 KLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           +++  ++  G EPD   + ++I AYCK
Sbjct: 255 EVYGEMKDEGFEPDVVAYGIIINAYCK 281



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/232 (19%), Positives = 106/232 (45%), Gaps = 4/232 (1%)

Query: 40  AQLIDSIRLAVRSNSSNSLSSLLNDR--LLDPFIVTHALRSAPNADS-ALSIMEALKSNP 96
           +Q  D I   +   + + + +LLN+    L P ++   L+   NA   ALS+ +  ++  
Sbjct: 65  SQDADKICKILSKFTDSKVETLLNEASVKLSPALIEEVLKKLSNAGVLALSVFKWAENQK 124

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
            F H  S  +AL   L K ++   +  L+ D+   K L+    F  + + Y+ +  ++  
Sbjct: 125 GFKHTTSNYNALIESLGKIKQFKLIWNLVDDMKQKKLLSKDT-FALISRRYARARKVKEA 183

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           ++ +++       + +  +N ++ + +K+    +A + F ++  +   P+ ++YT+++E 
Sbjct: 184 ITAFHKMEDYGFKMESSDFNRMLDILSKSRNVGDAQKVFDKMKKKRFEPDIKSYTILLEG 243

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
                 L    EV+  +     +     Y I++  +   +++DEA    NEM
Sbjct: 244 WGQELNLLRVNEVYGEMKDEGFEPDVVAYGIIINAYCKAKKYDEAVRFFNEM 295



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 95/232 (40%), Gaps = 15/232 (6%)

Query: 77  RSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNV 136
           R    A +A   ME    +  F    S  + +  +L+KS+   + + +   +   +F   
Sbjct: 178 RKVKEAITAFHKME----DYGFKMESSDFNRMLDILSKSRNVGDAQKVFDKMKKKRFEPD 233

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
             ++  L++ +    +L  V   + E +         +Y I+++ Y K  K  EAV  F 
Sbjct: 234 IKSYTILLEGWGQELNLLRVNEVYGEMKDEGFEPDVVAYGIIINAYCKAKKYDEAVRFFN 293

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF-----SALPLMRIKRTSKQYLILVEG 251
           ++      P+   +  +I  L +  KL+ ALE F     S  PL      +  Y  LV  
Sbjct: 294 EMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPL-----EAPTYNALVGA 348

Query: 252 FVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREM 302
           +   +R ++A   ++EMR  G  P  R   + L  +  M   + A E  ++M
Sbjct: 349 YCWSQRMEDAFKTVDEMRSKGIGPNARTYDIILHHLIRMQRTKEAYEVYQKM 400



 Score = 46.2 bits (108), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 24/181 (13%)

Query: 116 QRN-----HELKTLIGDISSSKFLNVSVNFMN----------------LMQWYSTSGDLE 154
           QRN     H   +LI  + S K LN ++ F                  L+  Y  S  +E
Sbjct: 297 QRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRME 356

Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
               T +E R +    +  +Y+I++    +  +  EA E ++++  E   P   TY +M+
Sbjct: 357 DAFKTVDEMRSKGIGPNARTYDIILHHLIRMQRTKEAYEVYQKMSCE---PTVSTYEIMV 413

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
               N  +LD A++++  +    +      +  L+       + DEA    NEM D G  
Sbjct: 414 RMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIR 473

Query: 275 P 275
           P
Sbjct: 474 P 474



 Score = 39.3 bits (90), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 35/184 (19%), Positives = 80/184 (43%), Gaps = 27/184 (14%)

Query: 447 IIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
           +I+  G  KK + AL+ F   ++   P+        Y++L+      +R  DA   ++EM
Sbjct: 310 LINGLGSEKKLNDALEFFERSKSSGFPLE----APTYNALVGAYCWSQRMEDAFKTVDEM 365

Query: 507 IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY--- 563
              GI P+ +T+  +++H       K   + + + ++   EP    ++++++ +C     
Sbjct: 366 RSKGIGPNARTYDIILHHLIRMQRTK---EAYEVYQKMSCEPTVSTYEIMVRMFCNKERL 422

Query: 564 ---------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALR--G 612
                    +    ++P       L  +L  E +      ++E CE  N++  + +R  G
Sbjct: 423 DMAIKIWDEMKGKGVLPGMHMFSSLITALCHENK------LDEACEYFNEMLDVGIRPPG 476

Query: 613 HIWA 616
           H+++
Sbjct: 477 HLFS 480


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 86/435 (19%), Positives = 165/435 (37%), Gaps = 71/435 (16%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +++ ++  + K GK  EA E  +++I  G  P++ TYT +I+      +LD A  +   +
Sbjct: 319 AFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLM 378

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFI 292
                    + + IL+ G+      D+   L  +M   G           ++   E+G +
Sbjct: 379 VSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKL 438

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
           + A E  +EM+  +   ++                      ++Y + L    D     N 
Sbjct: 439 EVAKELFQEMVSRRVRPDI----------------------VSYKILLDGLCD-----NG 471

Query: 353 LDEWSPEVVSLLADAKF---VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYAL 409
             E + E+   +  +K    +    ++   + +    + AW  FC +  + G   DV   
Sbjct: 472 EPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLK-GVKPDVKTY 530

Query: 410 EKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRT 469
             M+  L + G +   D L  K+  DG      T  ++I  +     A  + K   + + 
Sbjct: 531 NIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKR 590

Query: 470 LCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
            CG         + +S LR          A++ L  M+ +G  PDV TF+ L+  F L+ 
Sbjct: 591 -CG-------FSVDASTLRF---------ALSTLARMLKAGHEPDVFTFTTLLRPFCLEE 633

Query: 530 DEKI--VQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM----------------P 571
           +  +     LF  ++  G +P+   +  +I+     L N N++                P
Sbjct: 634 NASVYDAPTLFKNMKAMGYKPNVVTYNTVIKG----LLNGNMISQVPGVLDQMFERGCQP 689

Query: 572 DAATKELLKKSLWKE 586
           +A TK      L K+
Sbjct: 690 NAVTKSTFISGLCKQ 704



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 8/177 (4%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           + G+  +      +L ++ + G   L   L+ K+    ++L      +IID        D
Sbjct: 205 ETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLD 264

Query: 459 AALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
            A   F++       I  FK  +++Y++L+R      R  D   +L +MI   I PDV  
Sbjct: 265 NAFNLFNEME-----IKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVA 319

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--YLSNSNLMPD 572
           FS L+  F  +G  +  ++L   + Q G+ PD   +  LI  +CK   L  +N M D
Sbjct: 320 FSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLD 376



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 61/145 (42%)

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L+ D+   K     V F  L+  +   G L        E  QR     T +Y  ++  + 
Sbjct: 304 LLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFC 363

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           K  +  +A      ++ +G  PN RT+ ++I        +D  LE+F  + L  +   + 
Sbjct: 364 KENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTV 423

Query: 244 QYLILVEGFVGVERFDEAKSLLNEM 268
            Y  L++GF  + + + AK L  EM
Sbjct: 424 TYNTLIQGFCELGKLEVAKELFQEM 448



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 105/529 (19%), Positives = 210/529 (39%), Gaps = 61/529 (11%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           ++F  L    + +   +LVL    +   +    +  + +I+++   +  K   A     +
Sbjct: 73  IDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGK 132

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +I  G  P++ T++ +I  L   G++  ALE+   +  M  K T      LV G     +
Sbjct: 133 IIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGK 192

Query: 258 FDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDK-RIKNVRY-- 313
             +A  L++ M + G  P        L+ M + G    A E LR+M   K ++  V+Y  
Sbjct: 193 VSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSI 252

Query: 314 -----YEDGSDDDEDE--NDDNNSGVR---IAYGVQLKP------WLDPKALANTL--DE 355
                 +DGS D+     N+    G +   I Y   ++       W D   L   +   +
Sbjct: 253 IIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRK 312

Query: 356 WSPEVV--SLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKML 413
            +P+VV  S L D  FV   +L        ++ E           Q G + D      ++
Sbjct: 313 ITPDVVAFSALIDC-FVKEGKLR-------EAEELHKEMI-----QRGISPDTVTYTSLI 359

Query: 414 TILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGP 473
               +   ++  + ++  + S G      T  ++I+ Y  +   D  L+ F    +L G 
Sbjct: 360 DGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRK-MSLRGV 418

Query: 474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
           ++     + Y++L++   +  +   A  + +EM+   + PD+ ++  L+      G+ + 
Sbjct: 419 VAD---TVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEK 475

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKK 581
             ++F  + ++ +E D  ++ ++I   C              L    + PD  T  ++  
Sbjct: 476 ALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIG 535

Query: 582 SLWKEGRRKEAAAVEERCEKINDVP-----SLALRGHIW---AVSSADL 622
            L K+G   EA  +  + E+    P     ++ +R H+    A  SA L
Sbjct: 536 GLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKL 584



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 51/251 (20%), Positives = 105/251 (41%), Gaps = 10/251 (3%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           L+D F+    LR A      + I   +  +P+     S +          + NH L    
Sbjct: 323 LIDCFVKEGKLREAEELHKEM-IQRGI--SPDTVTYTSLIDGFCKENQLDKANHML---- 375

Query: 126 GDISSSKFLNVSVNFMN-LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK 184
            D+  SK    ++   N L+  Y  +  ++  L  + +   R  +  T +YN ++  + +
Sbjct: 376 -DLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 434

Query: 185 TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQ 244
            GK   A E F++++     P+  +Y ++++ L + G+ + ALE+F  +   +++     
Sbjct: 435 LGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGI 494

Query: 245 YLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREML 303
           Y I++ G     + D+A  L   +   G  P  +   + +  + + G +  A+   R+M 
Sbjct: 495 YNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKME 554

Query: 304 PDKRIKNVRYY 314
            D    N   Y
Sbjct: 555 EDGHSPNGCTY 565



 Score = 45.8 bits (107), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 36/176 (20%), Positives = 74/176 (42%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
             +HN  TL  +     + ++     + +G I    +   +V F  L+      G +   
Sbjct: 102 GIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEA 161

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           L   +   +     +  + N +++     GK  +AV    ++++ G  PN  TY  +++ 
Sbjct: 162 LELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKV 221

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +   G+   A+E+   +   +IK  + +Y I+++G       D A +L NEM   G
Sbjct: 222 MCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 277



 Score = 38.9 bits (89), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 68/172 (39%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           TL+AL   L  + +  +   LI  +  + F    V +  +++    SG   L +    + 
Sbjct: 179 TLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKM 238

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
            +R   L    Y+I++    K G    A   F ++  +G   +   YT +I      G+ 
Sbjct: 239 EERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRW 298

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           D   ++   +   +I      +  L++ FV   +  EA+ L  EM   G  P
Sbjct: 299 DDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISP 350


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 75/345 (21%), Positives = 137/345 (39%), Gaps = 37/345 (10%)

Query: 1   MFSKRFLPAVI--------------LSKAFTQLQTRSFVRAPFTNKLALYLRRAQLIDSI 46
           MF KR  P V+              L KAF  L     V       +  +     L+D +
Sbjct: 215 MFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLN--EMVLKNVNPNVCTF---NTLVDGL 269

Query: 47  RLAVRSNSSNSLSSLLNDRLLDPFIVTH--------ALRSAPNADSALSIMEALKSNPNF 98
               +   + SL +++    + P + T+         ++ A  A +  +IM  +    + 
Sbjct: 270 CKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDV 329

Query: 99  SHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLS 158
            H+ S    + + L+K +   E   L   + +   +   V + +L+     SG +   L 
Sbjct: 330 -HSYS---VMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALK 385

Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
             +E   R +  +  +Y  ++    K+ +  +A+   +++ D+G   N  TY ++++ L 
Sbjct: 386 YVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLC 445

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GR 277
             G+L  A +VF  L +         Y I++ G      FDEA +LL++M D G  P   
Sbjct: 446 KDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAI 505

Query: 278 AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDE 322
           A    +    E      A + LREM     I  V Y ++G   D+
Sbjct: 506 AYETIINAFFEKDMNDKAEKLLREM-----IDCVDYKDNGDTCDQ 545



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 94/473 (19%), Positives = 179/473 (37%), Gaps = 67/473 (14%)

Query: 165 QRAKLLSTES----YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           QR +L   +S     NI+++ Y    +   A   F +++  G  P+  TYT +I  L   
Sbjct: 73  QRMELHGIQSNYITLNILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLN 132

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM- 279
           G++  +L     L    IK     Y  L+ G   + +   A  LL ++  +   P   M 
Sbjct: 133 GQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMY 192

Query: 280 RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQ 339
              ++ + +   ++ A +   EM   +   NV  Y                   + YG  
Sbjct: 193 NTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTY-----------------TSLIYGFC 235

Query: 340 LKPWLDPK-ALAN--TLDEWSPEVVS-------LLADAKFVWTTRLVCKVLRHFKSPET- 388
           +   LD    L N   L   +P V +       L  + K      LV  +++    P+  
Sbjct: 236 IVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVF 295

Query: 389 -----------------AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAK 431
                            A + F  +A Q G T DV++   M++ L++   ++    L   
Sbjct: 296 TYNALMDGYFLVKEAGKAKNVFNIMA-QMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEG 354

Query: 432 LRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLT 491
           +R++ +         +ID    S + ++ALK   +      P +    ++ Y+SL+  L 
Sbjct: 355 MRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPN----VITYTSLIDALC 410

Query: 492 KCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAY 551
           K  +   AI +L+++   GI  ++ T++ L+      G     QK+F  +   G   D  
Sbjct: 411 KSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVV 470

Query: 552 MFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
            + ++I   CK             + +   +PDA   E +  + +++    +A
Sbjct: 471 TYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAIAYETIINAFFEKDMNDKA 523


>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
 gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
          Length = 543

 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 93/203 (45%), Gaps = 5/203 (2%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D+AL +  A++       +  T + LA  L +  R  E KTL+  +         V +  
Sbjct: 324 DNALKVKAAMEKM-GIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTT 382

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE- 201
           L+  +   GD+      + E   +  + S  +YN++M  Y K G   EA E FR+ +++ 
Sbjct: 383 LISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREA-ERFRKEMEKK 441

Query: 202 GAIPNSRTYTVMIE-HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
           G +P+  TY  ++  H VN GK+D AL++F  +     +     Y  L+ G     R +E
Sbjct: 442 GLVPDVYTYASLVHGHCVN-GKVDVALKLFEEMKHRGTEPNVVAYTALISGLAKEGRSEE 500

Query: 261 AKSLLNEMRDDGKFPGRAMRVAL 283
           A  L ++M   G  P  ++  AL
Sbjct: 501 AFQLYDDMLKAGLTPDDSLYSAL 523



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 80/208 (38%), Gaps = 36/208 (17%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+   ST+GD+  V +  +E + +        Y  V++ Y + G    A E F + +  G
Sbjct: 208 LVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNVRRASEVFDECVGNG 267

Query: 203 AIPNSRTYTVMIEHLVNLGKL-----------------------------------DSAL 227
             PN RTY V+I     +G++                                   D+AL
Sbjct: 268 IEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQGMVDNAL 327

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQ 287
           +V +A+  M I+     Y  L  G   V R  EAK+LL+ M + G  P       L  + 
Sbjct: 328 KVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTTLISIH 387

Query: 288 -EMGFIQGANEFLREMLPDKRIKNVRYY 314
            + G +  A    REM     + +V  Y
Sbjct: 388 CKEGDMVEARRLFREMAGKGAMPSVVTY 415



 Score = 43.1 bits (100), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 12/98 (12%)

Query: 504 EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY 563
           +EM   G+VPDV T++ L++   + G   +  KLF  ++  G EP+   +  LI    K 
Sbjct: 436 KEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLAKE 495

Query: 564 ------------LSNSNLMPDAATKELLKKSLWKEGRR 589
                       +  + L PD +    L  SL  + R+
Sbjct: 496 GRSEEAFQLYDDMLKAGLTPDDSLYSALVGSLHTDNRK 533



 Score = 42.0 bits (97), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 40/82 (48%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           L Y+SLL    + K D     +LE M   GI   V T++ L+   +  GD   V+ +   
Sbjct: 168 LCYNSLLDCYVRRKDDARVQELLEIMENGGIEATVGTYTILVDSLSTAGDISKVEAVVDE 227

Query: 541 VRQNGVEPDAYMFKVLIQAYCK 562
           ++   V  D Y++  +I AYC+
Sbjct: 228 MKAKNVAGDVYLYTAVINAYCR 249



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++L+    K     +A  +  EM   G +P V T++ +M  +  +G  +  ++    + 
Sbjct: 380 YTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEME 439

Query: 543 QNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRK 590
           + G+ PD Y +  L+  +C            + + +    P+      L   L KEGR +
Sbjct: 440 KKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLAKEGRSE 499

Query: 591 EA 592
           EA
Sbjct: 500 EA 501



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 10/146 (6%)

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL 479
           G +E  + L+A ++  G+         +ID Y      D ALK       +   + K  +
Sbjct: 286 GQMEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQGMVDNALK-------VKAAMEKMGI 338

Query: 480 ML---LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
            L    Y++L   L +  R  +A  +L  MI  G+ P+  T++ L+     +GD    ++
Sbjct: 339 ELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTTLISIHCKEGDMVEARR 398

Query: 537 LFSMVRQNGVEPDAYMFKVLIQAYCK 562
           LF  +   G  P    + V++  Y K
Sbjct: 399 LFREMAGKGAMPSVVTYNVMMDGYIK 424


>gi|356556344|ref|XP_003546486.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02650,
           mitochondrial-like isoform 1 [Glycine max]
 gi|356556346|ref|XP_003546487.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02650,
           mitochondrial-like isoform 2 [Glycine max]
          Length = 538

 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 55/101 (54%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           +N V++ Y+K G+  +AVE  R +   G  P+  TYTV+     N G+++ A ++ + + 
Sbjct: 374 FNFVVTAYSKAGEMGKAVEMMRLMESRGLRPDVYTYTVLASAYSNGGEMEEAQKILAEVK 433

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
               K     +  L+ G+  +E+FDEA  LL EM+D G  P
Sbjct: 434 KKHAKLGPVMFHTLIRGYCKLEQFDEALKLLAEMKDYGVHP 474



 Score = 39.3 bits (90), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 29/141 (20%), Positives = 64/141 (45%), Gaps = 8/141 (5%)

Query: 422 VELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLML 481
           +E+++ +  + R   ++   + +R +     + K  +  LK   D     GP     +  
Sbjct: 321 LEMLEDIPEEKRERAIKPFLAVVRALCRIKEVDKAKELVLKMIED-----GPPPGNAV-- 373

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
            ++ ++   +K      A+ ++  M   G+ PDV T++ L   ++  G+ +  QK+ + V
Sbjct: 374 -FNFVVTAYSKAGEMGKAVEMMRLMESRGLRPDVYTYTVLASAYSNGGEMEEAQKILAEV 432

Query: 542 RQNGVEPDAYMFKVLIQAYCK 562
           ++   +    MF  LI+ YCK
Sbjct: 433 KKKHAKLGPVMFHTLIRGYCK 453


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 21/180 (11%)

Query: 427 RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSL 486
           RL+ ++   G+    +    II     + + D+AL  + D +  C P      ++ Y+ L
Sbjct: 54  RLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRHCAPS-----VITYTIL 108

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG--DEKIVQKLFSMVRQN 544
           +  L K  R  DA  +LE+MI +G  P+V T++ L+  F   G  DE +V  LF+ + +N
Sbjct: 109 VDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVV--LFNQMLEN 166

Query: 545 GVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
              PD + + +LI  YCK             +      P+  T   L  SL K G+  +A
Sbjct: 167 SCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDA 226



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 92/416 (22%), Positives = 167/416 (40%), Gaps = 48/416 (11%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y+ +++ + K     +A     ++   G +P++  Y  +I+ L + G++DSAL  +  +
Sbjct: 35  TYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDM 94

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFI 292
                  +   Y ILV+      R  +A  +L +M + G  P        +    ++G +
Sbjct: 95  Q-RHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNM 153

Query: 293 QGANEFLREMLPDKRIKNVRYYE---DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKAL 349
             A     +ML +    +V  Y    DG    E   D    G ++   + +K   +P  +
Sbjct: 154 DEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQD----GAKLLQEM-VKYGCEPNFI 208

Query: 350 A-NTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHF--------FCWV---- 396
             NTL +      SL+   K++    L   +LR    P    HF        FC V    
Sbjct: 209 TYNTLMD------SLVKSGKYIDAFNLAQMMLRRDCKPS---HFTFNLMIDMFCKVGQLD 259

Query: 397 -AYQ-------PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII 448
            AY+        G   D+Y    M++   R   ++   +L+ ++   G      T   I+
Sbjct: 260 LAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIV 319

Query: 449 DFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF 508
                + + D A + +   R        F  ++  S+L+  L K +R  DA  +L EM  
Sbjct: 320 SGLCKASQVDEAYEVYEVLRNG----GYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMER 375

Query: 509 SGIVPDVQTFSGLMYHF--ALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           +G  PDV  ++ L++ F  A Q D+ +    FS +   G  P    + ++I   CK
Sbjct: 376 NGSAPDVVAYTILIHGFCKADQLDKSLA--FFSEMLDKGCVPTVITYSIVIDKLCK 429



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 84/204 (41%), Gaps = 17/204 (8%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T   L   L KS R  +   ++ D+  +      V +  L+  +   G+++  +  +N+ 
Sbjct: 104 TYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQM 163

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
            + +      +YNI++  Y K  +  +  +  ++++  G  PN  TY  +++ LV  GK 
Sbjct: 164 LENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKY 223

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-------- 275
             A  +   +     K +   + ++++ F  V + D A  L   M D G  P        
Sbjct: 224 IDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIM 283

Query: 276 ----GRAMRV-----ALERMQEMG 290
                RA R+      LERM E G
Sbjct: 284 ISGACRANRIDDARQLLERMTEAG 307



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 82/206 (39%), Gaps = 28/206 (13%)

Query: 83  DSALSIMEALK--SNPNFSHNQSTLHALATVLAKSQR-----NHELKTLIGDISSSKFLN 135
           D A  + E +K    PNF     T + L   L KS +     N     L  D   S F  
Sbjct: 190 DGAKLLQEMVKYGCEPNFI----TYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHF-- 243

Query: 136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF 195
               F  ++  +   G L+L    +     R  L    +YNI++S   +  +  +A +  
Sbjct: 244 ---TFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLL 300

Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL------ILV 249
            ++ + G  P+  TY  ++  L    ++D A EV+  L      R    +L       L+
Sbjct: 301 ERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVL------RNGGYFLDVVTCSTLI 354

Query: 250 EGFVGVERFDEAKSLLNEMRDDGKFP 275
           +G     R D+A+ LL EM  +G  P
Sbjct: 355 DGLCKSRRLDDAEKLLREMERNGSAP 380



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 2/122 (1%)

Query: 156 VLSTWNEYR--QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           V S    YR  QR    S  +Y I++    K+ +  +A      +I+ G  PN  TY  +
Sbjct: 84  VDSALVHYRDMQRHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTL 143

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           I     LG +D A+ +F+ +           Y IL++G+   ER  +   LL EM   G 
Sbjct: 144 INGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGC 203

Query: 274 FP 275
            P
Sbjct: 204 EP 205



 Score = 45.8 bits (107), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 12/129 (9%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           + Y++L+ +L K  +  DA N+ + M+     P   TF+ ++  F   G   +  +LF +
Sbjct: 208 ITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQL 267

Query: 541 VRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGR 588
           +   G  PD Y + ++I   C+             ++ +   PD  T   +   L K  +
Sbjct: 268 MTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQ 327

Query: 589 RKEAAAVEE 597
             EA  V E
Sbjct: 328 VDEAYEVYE 336


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 2/188 (1%)

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           +S   F +V V +  L++ +     +E  +  + E  QR  + +T +YNI++    + G 
Sbjct: 183 VSKHCFPDV-VTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGD 241

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
              A E F++++ +G  PN  TY  +++ L   GKL+ A+ VF  L   +++ T   Y I
Sbjct: 242 CDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNI 301

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDK 306
           ++EG     + ++   L   +   G  P   A    +      G  + A+   +EM  D 
Sbjct: 302 MIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDG 361

Query: 307 RIKNVRYY 314
            + N   Y
Sbjct: 362 TLPNSGCY 369



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 74/142 (52%), Gaps = 14/142 (9%)

Query: 424 LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL---M 480
           L+DR++AK    G +    T  ++++  G+ K+ D  L AF+    L   + + KL   +
Sbjct: 3   LIDRMVAK----GCQPDLVTYGVVVN--GLCKRGDTDL-AFN----LLNKMEQGKLEPGV 51

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           L+Y++++  L K K   DA+N+ +EM   GI P+V T+S L+      G      +L S 
Sbjct: 52  LIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSD 111

Query: 541 VRQNGVEPDAYMFKVLIQAYCK 562
           + +  + PD + F  LI A+ K
Sbjct: 112 MIERKINPDVFTFSALIDAFVK 133



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 82/207 (39%), Gaps = 16/207 (7%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D+     ++  L + G  +L   L+ K+    +         IID     K  D A
Sbjct: 11  GCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDA 70

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           L  F +  T          ++ YSSL+  L    R  DA  +L +MI   I PDV TFS 
Sbjct: 71  LNLFKEMETK----GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSA 126

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSN 568
           L+  F  +G     +KL+  + +  ++P    +  LI  +C            +++ + +
Sbjct: 127 LIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKH 186

Query: 569 LMPDAATKELLKKSLWKEGRRKEAAAV 595
             PD  T   L K   K  R +E   V
Sbjct: 187 CFPDVVTYNTLIKGFCKYKRVEEGMEV 213



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 87/202 (43%), Gaps = 20/202 (9%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           DV+    ++    + G +   ++L  ++    +     T   +I+ + +  + D A + F
Sbjct: 120 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 179

Query: 465 HDDRTLCGPISK--FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
                    +SK  F  ++ Y++L++   K KR  + + V  EM   G+V +  T++ L+
Sbjct: 180 E------FMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILI 233

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLM 570
                 GD  + Q++F  +  +GV P+   +  L+   CK            YL  S + 
Sbjct: 234 QGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKME 293

Query: 571 PDAATKELLKKSLWKEGRRKEA 592
           P   T  ++ + + K G+ ++ 
Sbjct: 294 PTIYTYNIMIEGMCKAGKVEDG 315



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 85/204 (41%), Gaps = 1/204 (0%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           +   L    + D AL++ + +++      N  T  +L + L    R  +   L+ D+   
Sbjct: 57  IIDGLCKYKHMDDALNLFKEMETK-GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIER 115

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
           K       F  L+  +   G L      ++E  +R+   S  +Y+ +++ +    +  EA
Sbjct: 116 KINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEA 175

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
            + F  ++ +   P+  TY  +I+      +++  +EVF  +    +   +  Y IL++G
Sbjct: 176 KQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQG 235

Query: 252 FVGVERFDEAKSLLNEMRDDGKFP 275
                  D A+ +  EM  DG  P
Sbjct: 236 LFQAGDCDMAQEIFKEMVSDGVPP 259



 Score = 42.4 bits (98), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 53/118 (44%)

Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
           GD +L  +  N+  Q         YN ++    K     +A+  F+++  +G  PN  TY
Sbjct: 30  GDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTY 89

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           + +I  L N G+   A  + S +   +I      +  L++ FV   +  EA+ L +EM
Sbjct: 90  SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEM 147



 Score = 39.3 bits (90), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 12/104 (11%)

Query: 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           +++ M+  G  PD+ T+  ++     +GD  +   L + + Q  +EP   ++  +I   C
Sbjct: 3   LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLC 62

Query: 562 KY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
           KY            +    + P+  T   L   L   GR  +A+
Sbjct: 63  KYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDAS 106


>gi|222617300|gb|EEE53432.1| hypothetical protein OsJ_36514 [Oryza sativa Japonica Group]
          Length = 607

 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 96/229 (41%), Gaps = 28/229 (12%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D+Y     +  + + G++EL  +++  + + G++    T   +ID Y   +K + A
Sbjct: 82  GIGRDIYTYNTFIDAICKCGNMELAMQVLLDMEAKGVKPNVVTYSTLIDGYSKLEKYEEA 141

Query: 461 LKAFHDDRTLCGPISKFKLML---LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
           LK       LC  +   ++ L    Y++LL    K  +  +  NV +EM   GI  D  T
Sbjct: 142 LK-------LCEKMKSMRIQLDRVCYNTLLAIYVKAGKYAEIANVCDEMEELGIEKDTVT 194

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK----------YL--S 565
           ++ L+  +  QG   IV  L   +R+ GV P    +  LI  Y K          YL   
Sbjct: 195 YNSLINGYGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFK 254

Query: 566 NSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHI 614
            S L PD         +L K G       +E     +ND+  + ++ ++
Sbjct: 255 ESGLKPDVVLFSSFIDTLAKNG------LIEWALSLLNDMTEMGIKPNV 297



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 91/200 (45%), Gaps = 1/200 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           + AL + E +KS      ++   + L  +  K+ +  E+  +  ++        +V + +
Sbjct: 139 EEALKLCEKMKS-MRIQLDRVCYNTLLAIYVKAGKYAEIANVCDEMEELGIEKDTVTYNS 197

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  Y   G L++V     + R+R    S  +Y+ ++ +Y+K G + +A   +    + G
Sbjct: 198 LINGYGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESG 257

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+   ++  I+ L   G ++ AL + + +  M IK     Y  +++ F   +   E  
Sbjct: 258 LKPDVVLFSSFIDTLAKNGLIEWALSLLNDMTEMGIKPNVVTYNAIIDAFGKSKVMMEDD 317

Query: 263 SLLNEMRDDGKFPGRAMRVA 282
           S + +M   G + G+ +RVA
Sbjct: 318 SEVGDMGIVGVYGGQIVRVA 337



 Score = 47.0 bits (110), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 76/389 (19%), Positives = 156/389 (40%), Gaps = 54/389 (13%)

Query: 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT 211
           DL   L  + +  +       +++N +++  ++ G   +A   F ++I  G   +  TY 
Sbjct: 32  DLRFTLGYFRQMLKDGLCPDRKTFNSLLAACSRVGHLEDARAVFDEMIHLGIGRDIYTYN 91

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
             I+ +   G ++ A++V   +    +K     Y  L++G+  +E+++EA  L  +M   
Sbjct: 92  TFIDAICKCGNMELAMQVLLDMEAKGVKPNVVTYSTLIDGYSKLEKYEEALKLCEKM--- 148

Query: 272 GKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSG 331
                ++MR+ L+R+                L    +K  +Y E  +  DE E       
Sbjct: 149 -----KSMRIQLDRV------------CYNTLLAIYVKAGKYAEIANVCDEMEE------ 185

Query: 332 VRIAYGVQLKPWLDPKALANTLDEWSP-EVVSLLAD---AKFVWTTRLVCKVLRHFKSPE 387
                G++ K  +   +L N   +    ++VS+L      + V  + L    L    S +
Sbjct: 186 ----LGIE-KDTVTYNSLINGYGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYS-K 239

Query: 388 TAWHFFCWVAY----QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFST 443
              H   +  Y    + G   DV      +  LA++G +E    L+  +   G++    T
Sbjct: 240 AGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAKNGLIEWALSLLNDMTEMGIKPNVVT 299

Query: 444 IRLIIDFYGISK--------KADAALKAFHDDRT--LCGPISKFKLMLLYSSLLRTLTKC 493
              IID +G SK          D  +   +  +   +  P+S+       S+    + + 
Sbjct: 300 YNAIIDAFGKSKVMMEDDSEVGDMGIVGVYGGQIVRVANPVSRGG----RSATDVRMRRS 355

Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
           +  F  + + ++M+  G+ P+V TFS ++
Sbjct: 356 QELFFILELFQKMVQQGVRPNVVTFSAIL 384



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 59/133 (44%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           F +L+   S  G LE   + ++E           +YN  +    K G    A++    + 
Sbjct: 55  FNSLLAACSRVGHLEDARAVFDEMIHLGIGRDIYTYNTFIDAICKCGNMELAMQVLLDME 114

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
            +G  PN  TY+ +I+    L K + AL++   +  MRI+     Y  L+  +V   ++ 
Sbjct: 115 AKGVKPNVVTYSTLIDGYSKLEKYEEALKLCEKMKSMRIQLDRVCYNTLLAIYVKAGKYA 174

Query: 260 EAKSLLNEMRDDG 272
           E  ++ +EM + G
Sbjct: 175 EIANVCDEMEELG 187



 Score = 40.0 bits (92), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 4/158 (2%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           D      +L I  + G    +  +  ++   G+     T   +I+ YG   + D      
Sbjct: 156 DRVCYNTLLAIYVKAGKYAEIANVCDEMEELGIEKDTVTYNSLINGYGKQGRLDIVSILV 215

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
            D R      S    +L YS+L+   +K     DA NV  +   SG+ PDV  FS  +  
Sbjct: 216 QDMRKRGVAPS----VLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDT 271

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            A  G  +    L + + + G++P+   +  +I A+ K
Sbjct: 272 LAKNGLIEWALSLLNDMTEMGIKPNVVTYNAIIDAFGK 309


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 79/403 (19%), Positives = 160/403 (39%), Gaps = 60/403 (14%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN ++  Y K G+  +A+E   ++ + G  PN  TY V++  L   G+L+ A  +   +
Sbjct: 217 TYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEM 276

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
               +  ++  Y  L+ GF     F EA  L+ EM +   FP  +    L        + 
Sbjct: 277 LNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTL--------MY 328

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTL 353
           G  ++++                             +GVR+ +   LK    P  ++   
Sbjct: 329 GLCKWVQV----------------------------TGVRLRFSDMLKSKFTPDIVSFNS 360

Query: 354 DEWSPEVVSLLADAKFVWTTRLVCK-VLRHFKSPETAWHFFCWVAY------------QP 400
             +       +++A F+    L C+ ++    +  T  H  C   Y              
Sbjct: 361 LLYGYCRTGCISEA-FLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQ 419

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM---RLPFSTIRLIIDFYGISKKA 457
           G   D++    ++    + G+V +      ++ S G+   R  ++T R++    G  K A
Sbjct: 420 GLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNT-RIV----GEMKIA 474

Query: 458 DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
           D ++     +  L         ++ Y+  +  L +     +A ++LE M+  G++PD  T
Sbjct: 475 DTSVAFSMQEEMLAAGFP--PDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVT 532

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
           ++ ++  F   G  +  +++F+ +   GV P    + VLI A+
Sbjct: 533 YTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAH 575



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 2/137 (1%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y  +++ + K G   +A E F +++ +G  P+  TYTV+I        LD A   FS +
Sbjct: 532 TYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKM 591

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
               +      Y  ++ G     R DEA    +EM + G  P + +  + +     MG+ 
Sbjct: 592 LEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYW 651

Query: 293 QGANEFLREMLPDKRIK 309
           + A    REML D++I+
Sbjct: 652 EEALRLYREML-DRKIQ 667



 Score = 45.4 bits (106), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 90/210 (42%), Gaps = 3/210 (1%)

Query: 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
           ST + L   L K  +   ++    D+  SKF    V+F +L+  Y  +G +      ++E
Sbjct: 321 STYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDE 380

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
            + R  + +  +YN ++      G    A+   +++ D+G  P+  TYT+++     LG 
Sbjct: 381 LKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGY 440

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM--R 280
           +  A   F+ +    +K     Y   + G + +     A S+  EM   G FP   +   
Sbjct: 441 VSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAG-FPPDVITYN 499

Query: 281 VALERMQEMGFIQGANEFLREMLPDKRIKN 310
           V +  + + G  + A + L  M+ D  I +
Sbjct: 500 VFVHALCQQGNFEEACDLLENMVSDGLIPD 529



 Score = 43.5 bits (101), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 30/160 (18%), Positives = 75/160 (46%), Gaps = 1/160 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           +  HAL    N + A  ++E + S+     +  T  ++     K+    + + +  ++ S
Sbjct: 500 VFVHALCQQGNFEEACDLLENMVSD-GLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLS 558

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                  V +  L+  ++    L+L    +++  +++   +  +YN +++    T +  E
Sbjct: 559 KGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDE 618

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           A + F ++ ++G +PN  +YT++I    N+G  + AL ++
Sbjct: 619 AYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLY 658



 Score = 40.0 bits (92), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 89/440 (20%), Positives = 153/440 (34%), Gaps = 92/440 (20%)

Query: 194 TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
            F ++I  G +P+ +    ++  L +   L  A  V+  +    IK T   Y  +++ + 
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226

Query: 254 GVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVR 312
              R D+A  LL+EM++ G +P      V +  + + G ++ A   + EML         
Sbjct: 227 KEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEML--------- 277

Query: 313 YYEDGSDDDEDENDDNNSGVRI-AYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVW 371
                           NSG+ + AY                   ++P +        FV 
Sbjct: 278 ----------------NSGLNVSAY------------------TYNPLINGFCQKGLFVE 303

Query: 372 TTRLVCKVLRHFKSP-----ETAWHFFC-WVAY-----------QPGYTHDVYALEKMLT 414
              LV +++     P      T  +  C WV             +  +T D+ +   +L 
Sbjct: 304 AFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLY 363

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA--LKAFHDDRTLCG 472
              R G +     L  +L+   +     T   +I    +    DAA  LK    D+ L  
Sbjct: 364 GYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGL-- 421

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
               F  +  Y+ L+    K      A     EM+  G+ PD        Y+  + G+ K
Sbjct: 422 ----FPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPD-----RFAYNTRIVGEMK 472

Query: 533 IVQK--LFSMVRQ---NGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAAT 575
           I      FSM  +    G  PD   + V + A C+             + +  L+PD  T
Sbjct: 473 IADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVT 532

Query: 576 KELLKKSLWKEGRRKEAAAV 595
              +     K G  ++A  V
Sbjct: 533 YTSIINGFVKNGHLRKAREV 552



 Score = 38.9 bits (89), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 18/111 (16%)

Query: 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK---LFSMVRQNGVEPDAYMFKVLIQ 558
           V ++MI +G++PDV+  + ++    +  DE ++ K   ++ M+ Q G++P    +  ++ 
Sbjct: 167 VFDKMIRNGLLPDVKNCNRIL---RVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLD 223

Query: 559 AYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
           +YCK             +      P+  T  +L   L K+G  ++A  + E
Sbjct: 224 SYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIE 274


>gi|326517954|dbj|BAK07229.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 549

 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 137/316 (43%), Gaps = 44/316 (13%)

Query: 315 EDGSDDDEDENDD------NNSGVRIAYGVQLKPW-LDPKALANTLDEW----------- 356
           +DG   DED++D+      +N     ++G   KP  + P+A ++   E+           
Sbjct: 44  KDGDSFDEDDHDEFVLPIKSNPVEERSHGGGSKPLSIRPEAASHEEAEFEADFDEASRIL 103

Query: 357 -----SPEVVSLLADAKFVWTT-RLVCKVLRHFKSP-ETAWHFFCWVAYQPGYTHDVYAL 409
                SPE + +  D   V  + R+V K+LR F S    A+ FF W   Q GY H   + 
Sbjct: 104 TSCFASPEAIVIAMDCCPVRVSDRMVDKILRRFGSDWVAAFGFFMWAGAQEGYRHSADSY 163

Query: 410 EKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI-RLIIDFYGISKKADAALKAFHDDR 468
             M+ IL +    +L+  LI+++   G  +  +T+ +++    G S+  D A+ AF+   
Sbjct: 164 NSMVDILGKFKQFDLMWGLISQMDEIGGLVSLATMTKVMRRLAGASRWTD-AIDAFNKMD 222

Query: 469 TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
              G +     M   + LL TL K +    A    +E+  S + PD  +F+ L++ +   
Sbjct: 223 QF-GVVKDTTAM---NVLLDTLCKERSVKRARGAFQELRGS-VPPDESSFNTLVHGWCKA 277

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATK 576
                 + +   + ++G +P    +  LI+AYC              + +    P+  T 
Sbjct: 278 RMMNEARDMMKEMEEHGFKPSVITYTSLIEAYCMEKDFQTVYAILNEMRSKGCPPNVITY 337

Query: 577 ELLKKSLWKEGRRKEA 592
            ++  +L K GR +EA
Sbjct: 338 TIVMHALGKAGRTQEA 353



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 80/175 (45%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           ++S+ + L     K++  +E + ++ ++    F    + + +L++ Y    D + V +  
Sbjct: 263 DESSFNTLVHGWCKARMMNEARDMMKEMEEHGFKPSVITYTSLIEAYCMEKDFQTVYAIL 322

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           NE R +    +  +Y IVM    K G+  EA++ F +V  +G  P++  Y  +I  L   
Sbjct: 323 NEMRSKGCPPNVITYTIVMHALGKAGRTQEALDIFDKVRGDGCAPDASFYNSLIYILGRA 382

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           G+L+ A  V   + +  ++ T   +  L+       + + A  +L +M +    P
Sbjct: 383 GRLEDANSVVDKMRMTGVRPTVATFNTLISAACDHSQAENALKMLVKMEEQSCKP 437



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 85/206 (41%), Gaps = 18/206 (8%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G+   V     ++         + V  ++ ++RS G      T  +++   G + +   A
Sbjct: 294 GFKPSVITYTSLIEAYCMEKDFQTVYAILNEMRSKGCPPNVITYTIVMHALGKAGRTQEA 353

Query: 461 LKAFHDDRT-LCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           L  F   R   C P + F     Y+SL+  L +  R  DA +V+++M  +G+ P V TF+
Sbjct: 354 LDIFDKVRGDGCAPDASF-----YNSLIYILGRAGRLEDANSVVDKMRMTGVRPTVATFN 408

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNS 567
            L+         +   K+   + +   +PD   +  L++  CK            ++   
Sbjct: 409 TLISAACDHSQAENALKMLVKMEEQSCKPDIKTYTPLLKLCCKRQWIKVLRFLICHMFRK 468

Query: 568 NLMPDAATKELLKKSLWKEGRRKEAA 593
           ++ PD +T  LL   L + G+  ++ 
Sbjct: 469 DITPDFSTYTLLVTWLCRNGKPAQSC 494



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/143 (19%), Positives = 60/143 (41%), Gaps = 4/143 (2%)

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLL 487
           ++ ++   G +    T   +I+ Y + K         ++ R+   P +    ++ Y+ ++
Sbjct: 286 MMKEMEEHGFKPSVITYTSLIEAYCMEKDFQTVYAILNEMRSKGCPPN----VITYTIVM 341

Query: 488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE 547
             L K  R  +A+++ +++   G  PD   ++ L+Y     G  +    +   +R  GV 
Sbjct: 342 HALGKAGRTQEALDIFDKVRGDGCAPDASFYNSLIYILGRAGRLEDANSVVDKMRMTGVR 401

Query: 548 PDAYMFKVLIQAYCKYLSNSNLM 570
           P    F  LI A C +    N +
Sbjct: 402 PTVATFNTLISAACDHSQAENAL 424


>gi|222637475|gb|EEE67607.1| hypothetical protein OsJ_25160 [Oryza sativa Japonica Group]
          Length = 225

 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 12/125 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y +L+R L        A+ ++ EM  SGI P+V  +S L+  +   G  + V K+F  + 
Sbjct: 32  YGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMS 91

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
           + G+EPD  M+  LI + CK             +    L P+  T  +L   + KEG  K
Sbjct: 92  EKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVK 151

Query: 591 EAAAV 595
           EA  V
Sbjct: 152 EAIGV 156



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 76/187 (40%), Gaps = 1/187 (0%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           AD A+ ++ +++S      +  T   L   L  +    +   L+G++  S      V + 
Sbjct: 10  ADQAVGLLRSMRS-AGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYS 68

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
           +L+Q Y  SG  E V   + E  ++        Y  ++    K GK  +A      ++  
Sbjct: 69  SLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRR 128

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G  PN  TY V+I  +   G +  A+ V   +    +      Y  L++G   V   DEA
Sbjct: 129 GLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEA 188

Query: 262 KSLLNEM 268
             LL EM
Sbjct: 189 MWLLEEM 195



 Score = 42.7 bits (99), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 12/109 (11%)

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A+ +L  M  +G+  DV T+  L+       +     +L   + ++G+EP+  ++  L+Q
Sbjct: 13  AVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQ 72

Query: 559 AYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
            YCK             +S   + PD      L  SL K G+ K+A  V
Sbjct: 73  GYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGV 121


>gi|22773251|gb|AAN06857.1| Hypothetical protein [Oryza sativa Japonica Group]
          Length = 769

 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 101/477 (21%), Positives = 179/477 (37%), Gaps = 94/477 (19%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE---LVL 157
           + ST   L  V  K  R       +GD+     L   +    ++Q +  +G+ E   L  
Sbjct: 175 DNSTYGTLIDVHCKGGRERMALLWLGDMIKRGLLPDEITMSIVLQVHKKAGEYEKAELFF 234

Query: 158 STWN-EYRQRAK---LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
             W+ E   + K     S  +YN ++  Y K G+  +  +TF Q++ EG  PN  T+  M
Sbjct: 235 KRWSLESDVKMKGHPCYSLYTYNTLIDTYGKAGQLEKVSDTFNQMLREGVSPNVVTFNTM 294

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           I H+   GK                                  R ++  SL+  M +   
Sbjct: 295 I-HV--WGKH--------------------------------RRMEQVASLMRTMEEFQC 319

Query: 274 FPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGV 332
            P  R   + +   +E+  I  A  + R+M  +  + +V                  S  
Sbjct: 320 LPDTRTYNILISLYREINDIDVAEYYFRKMKAENLLPDVV-----------------SCR 362

Query: 333 RIAYGVQLKPWL-DPKALAN-------TLDEWSPEVVS-LLADAKFVWTTRLVCKVLRHF 383
            + YG  +K  + + +AL          +DE++   V+ +  DA  +             
Sbjct: 363 TLLYGYSIKGMVTEAQALLKEMYERNMVIDEYTQSAVTRMYVDAGML------------- 409

Query: 384 KSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFST 443
              E AW   CW   +  Y  +       +      GH+ L ++         M L    
Sbjct: 410 ---EQAW---CWFE-KFNYQLNSECFSANIDAFGERGHILLAEKAFMCCIKRKM-LSTCV 461

Query: 444 IRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVL 503
             ++I  YG+ +K D A +   D     G +  +   L YSSL+  ++  K    A+  L
Sbjct: 462 CNVMIKAYGLVEKLDEACE-IADGMERYGILPDY---LTYSSLIHLMSTAKLPEKALYYL 517

Query: 504 EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
            +M  + ++ D   +S ++  FA  G+  +V  LF  +  +G++ D Y++ +LI AY
Sbjct: 518 RKMQAAKLLIDCVPYSVVISCFAKNGNLHMVDCLFREMITSGIQADTYVYSILIDAY 574


>gi|255546465|ref|XP_002514292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546748|gb|EEF48246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 608

 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 31/195 (15%)

Query: 380 LRHFKSPETAWHFFCWVAY--QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM 437
           L+HF+S       F  ++   + G   D      M+   +  G+V+   ++  K++  G 
Sbjct: 106 LKHFES------IFLLISKVEENGMKPDSILYNAMINAFSESGNVKEAMKIFQKMKDTGC 159

Query: 438 RLPFSTIRLIIDFYGISKKADAALKAFH----------DDRTLCGPISKFKLMLLYSSLL 487
           +   ST   +I  YG + K +  LK  H          +DRT             Y+ L+
Sbjct: 160 KPTTSTFNTLIKGYGNAGKPEEGLKMLHLMSLDGSVKPNDRT-------------YNILV 206

Query: 488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE 547
           R     K   +A NVL +M+ SGI PDV T++ L   +A +G+    + L   ++   V 
Sbjct: 207 RAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAYAQKGETLRAEDLILEMQYEKVA 266

Query: 548 PDAYMFKVLIQAYCK 562
           P+     +++  YCK
Sbjct: 267 PNERTCGIIVNGYCK 281



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 56/102 (54%), Gaps = 1/102 (0%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YN +++ ++++G   EA++ F+++ D G  P + T+  +I+   N GK +  L++   + 
Sbjct: 131 YNAMINAFSESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGNAGKPEEGLKMLHLMS 190

Query: 235 L-MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           L   +K   + Y ILV  +   +  +EA ++L++M   G  P
Sbjct: 191 LDGSVKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVASGIQP 232



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 29/141 (20%), Positives = 63/141 (44%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + F  +M  +S++G ++     +N+  +        +++I+   Y + G+   A      
Sbjct: 340 ITFSTIMNAWSSAGLMDKCQEIFNDMAKAGIEPDIHAFSILAKGYVRAGETENAESVLTS 399

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G  PN    T +I    + GK+++A  V+  +  + I    K +  L+ G+    +
Sbjct: 400 MAKSGVRPNVVICTTIISGWCSAGKMENAKMVYEKMCEIGISPNLKTFETLIWGYAEARQ 459

Query: 258 FDEAKSLLNEMRDDGKFPGRA 278
             +A+ LL  M + G FP ++
Sbjct: 460 PGKAEELLQLMEEKGVFPEKS 480



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 90/462 (19%), Positives = 180/462 (38%), Gaps = 87/462 (18%)

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           +M++    GK  EA   F  ++++G  P   TYT ++  L  L   +S   + S +    
Sbjct: 64  LMNILIGKGKPHEANLIFDNLVEDGHRPTLITYTTLVAALTKLKHFESIFLLISKVEENG 123

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANE 297
           +K  S  Y                 +++N   + G     AM++  ++M++ G     + 
Sbjct: 124 MKPDSILY----------------NAMINAFSESGNVK-EAMKI-FQKMKDTGCKPTTST 165

Query: 298 FLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWS 357
           F      +  IK    Y +    +E        G+++ + + L   + P          +
Sbjct: 166 F------NTLIKG---YGNAGKPEE--------GLKMLHLMSLDGSVKP----------N 198

Query: 358 PEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW---HFFCWVAYQPGYTHDVYALEKMLT 414
               ++L  A   W ++         K+ E AW   H       QP    DV     +  
Sbjct: 199 DRTYNILVRA---WCSK---------KNIEEAWNVLHKMVASGIQP----DVVTYNILAR 242

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI 474
             A+ G     + LI +++ + +     T  +I++ Y        AL+  +  + L    
Sbjct: 243 AYAQKGETLRAEDLILEMQYEKVAPNERTCGIIVNGYCKEGNMIEALRFVYRMKEL---- 298

Query: 475 SKFKLMLLYSSLLRT---LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
                +++++SL++    +T      +A+ ++EE    G+ PDV TFS +M  ++  G  
Sbjct: 299 GVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEY---GVKPDVITFSTIMNAWSSAGLM 355

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELL 579
              Q++F+ + + G+EPD + F +L + Y +             ++ S + P+      +
Sbjct: 356 DKCQEIFNDMAKAGIEPDIHAFSILAKGYVRAGETENAESVLTSMAKSGVRPNVVICTTI 415

Query: 580 KKSLWKEGRRKEAAAVEERCEKINDVPSL-ALRGHIWAVSSA 620
                  G+ + A  V E+  +I   P+L      IW  + A
Sbjct: 416 ISGWCSAGKMENAKMVYEKMCEIGISPNLKTFETLIWGYAEA 457


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 87/206 (42%), Gaps = 23/206 (11%)

Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL 461
           Y+ D Y +  +L  L + G +E   R + +L   G+    ST  + I   G+ + +    
Sbjct: 12  YSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGL-CDISTFNIYIS--GLCRAS---- 64

Query: 462 KAFHDDRTLCGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
               D +T+   + K       + Y++LL  L    R  DA  + E MI +G  PDV T+
Sbjct: 65  -RIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTY 123

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSN 566
           + L++ F   G      K+F    + G  PD   +  LI  +CK             + +
Sbjct: 124 NTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVS 183

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEA 592
            +L+PD  T   L   L K GR  EA
Sbjct: 184 ESLVPDVVTYNSLVNGLCKNGRVDEA 209



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 95/449 (21%), Positives = 163/449 (36%), Gaps = 65/449 (14%)

Query: 169 LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALE 228
           L    ++NI +S   +  +  +A   F  +   G  PN  TY  ++  L N G++  A  
Sbjct: 47  LCDISTFNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQA 106

Query: 229 VFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQE 288
           ++  +           Y  L+ GF  V + DEA  + +     G  P      AL     
Sbjct: 107 LYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALIN--- 163

Query: 289 MGFIQG-----ANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPW 343
            GF +      A   L+ M+ +  + +V  Y              NS   +  G+     
Sbjct: 164 -GFCKADKLDEAQRILQRMVSESLVPDVVTY--------------NS---LVNGLCKNGR 205

Query: 344 LDPKALANTLDEWSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPG 401
           +D   +      +SP V++        ++T +  +C+ LR  +S             +P 
Sbjct: 206 VDEARMLIVDKGFSPNVIT--------YSTLISGLCRELRRLESARQLLEKMVLNGCKP- 256

Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL 461
              D+ +   ++  LAR   V    +L   +   G      T  ++ID      + + A 
Sbjct: 257 ---DIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAF 313

Query: 462 KAFHDDRTLCGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
           + F         + K  L    + Y+  +  L K  R  DA+ +L++M   G VPDV + 
Sbjct: 314 ELFSG-------LVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSH 366

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSN 566
           + ++     +      + L S +   G  P+A  F  LI   C            K +  
Sbjct: 367 NAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLK 426

Query: 567 SNLMPDAATKELLKKSLWK---EGRRKEA 592
             + P   T  +L   L K   EGR KEA
Sbjct: 427 RGVKPTVVTYNILVDGLCKARQEGRIKEA 455



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 110/512 (21%), Positives = 198/512 (38%), Gaps = 70/512 (13%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I    L  A     A ++ + ++ +  F  N+ T +AL + L    R  + + L   +  
Sbjct: 55  IYISGLCRASRIGDAQTVFDGMRKH-GFWPNRITYNALLSGLCNGGRMSDAQALYERMIK 113

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           + +    V +  L+  +   G L+  L  ++   +R  +    +YN +++ + K  K  E
Sbjct: 114 AGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDE 173

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA--LEVFSALPLMRIKRTSKQYLIL 248
           A    ++++ E  +P+  TY  ++  L   G++D A  L V        I      Y  L
Sbjct: 174 AQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKGFSPNVI-----TYSTL 228

Query: 249 VEGFV-GVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLR---EMLP 304
           + G    + R + A+ LL +M  +G  P      AL  +  +   QG +E L+    +L 
Sbjct: 229 ISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNAL--IHGLAREQGVSEALKLFGSVLR 286

Query: 305 DKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLL 364
                 V  Y    D    E D  N    +  G+ +K  L+P A+  T+       +  L
Sbjct: 287 QGYEPEVPTYNILIDGLLKE-DRVNEAFELFSGL-VKHGLEPDAITYTV------FIDGL 338

Query: 365 ADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVEL 424
             A  V    L+ K +                  + G   DV +   ++  L +   V+ 
Sbjct: 339 CKAGRVEDALLMLKDMD-----------------EKGCVPDVVSHNAVINGLCKEKRVDE 381

Query: 425 VDRLIAKLRSDGMR---LPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLML 481
            + L++ + + G     + F+T+       G  KKA                ++ FK ML
Sbjct: 382 AEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKA----------------MTTFKEML 425

Query: 482 ---------LYSSLLRTLTKCKRDF---DAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
                     Y+ L+  L K +++    +AI + + MI  G VPDV T+S L+      G
Sbjct: 426 KRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAG 485

Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
                ++L   +   G  P+ Y +  LI   C
Sbjct: 486 KLDDARRLLGAMEAKGCIPNVYTYNSLISGLC 517



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 58/129 (44%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+     +G L+           +  + +  +YN ++S      K  EA+E F  
Sbjct: 472 VTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVA 531

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++++G +P++ TY  +I  L     +D AL +F       +  TS  Y  L++G   V R
Sbjct: 532 MVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCAVAR 591

Query: 258 FDEAKSLLN 266
            DEA  LL 
Sbjct: 592 VDEALKLLQ 600



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 76/395 (19%), Positives = 140/395 (35%), Gaps = 74/395 (18%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           SYN ++   A+     EA++ F  V+ +G  P   TY ++I+ L+   +++ A E+FS L
Sbjct: 260 SYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGL 319

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
               ++  +  Y + ++G     R ++A  +L +M + G  P                + 
Sbjct: 320 VKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPD---------------VV 364

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTL 353
             N  +  +  +KR+        G +      +  +    I    +   W   K    T 
Sbjct: 365 SHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKW---KKAMTTF 421

Query: 354 DEW-----SPEVVS--LLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDV 406
            E       P VV+  +L D         +CK  +  +  E    F   +  + G   DV
Sbjct: 422 KEMLKRGVKPTVVTYNILVDG--------LCKARQEGRIKEAITLFDAMI--EKGRVPDV 471

Query: 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD 466
                ++  L + G ++   RL+  + + G          I + Y               
Sbjct: 472 VTYSALIDGLGKAGKLDDARRLLGAMEAKG---------CIPNVY--------------- 507

Query: 467 DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
                           Y+SL+  L    +  +A+ +   M+  G VPD  T+  ++    
Sbjct: 508 ---------------TYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALC 552

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
            Q        LF    + GV P + M+  LI   C
Sbjct: 553 KQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLC 587



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 34/163 (20%), Positives = 64/163 (39%)

Query: 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
           ST +   + L ++ R  + +T+   +    F    + +  L+      G +    + +  
Sbjct: 51  STFNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYER 110

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
             +        +YN ++  + K GK  EA++ F   +  G +P+  TY  +I       K
Sbjct: 111 MIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADK 170

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL 265
           LD A  +   +    +      Y  LV G     R DEA+ L+
Sbjct: 171 LDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLI 213


>gi|359482557|ref|XP_002277683.2| PREDICTED: pentatricopeptide repeat-containing protein At5g39710
           [Vitis vinifera]
          Length = 990

 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 85/431 (19%), Positives = 167/431 (38%), Gaps = 30/431 (6%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+Q +  S +       + E R+R   L   +YN+++   AK  K  +    F+ +  + 
Sbjct: 48  LLQAHLRSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKH 107

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  TYT+MI     +GK D +L +F  +           Y  +++        D+  
Sbjct: 108 CEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTI 167

Query: 263 SLLNEMRDDGKFP-GRAMRVALERMQEMG-------FIQGANEFLREMLPDKRIKNVRYY 314
            L ++M ++   P G    V L  +   G        ++ +N+F+ + +    ++ +   
Sbjct: 168 FLFSKMVENNCRPNGFTFSVILNVLVAEGQLGRLDEVVEVSNKFMNKSIYAYLVRTLSKL 227

Query: 315 EDGSDDD---------EDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLA 365
              S+            DE D      R AY   L+   D       LD  S      ++
Sbjct: 228 GHASEAHRLFCNMWSFHDEGD------RDAYMSMLESLCDAGKTTEALDLLSKIHEKRIS 281

Query: 366 DAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELV 425
               ++ T  V   L   K   +  H       Q G + D+++   +++   R G VE  
Sbjct: 282 TDTVMYNT--VLSALGKLKKT-SDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEA 338

Query: 426 DRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSS 485
            ++  +L +   +    +   +I+  G +   D A   F + R           ++ YS+
Sbjct: 339 VKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREE----GLSPDVVTYST 394

Query: 486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
           L+    K  +   A  + +EM+  G  P++ T++ L+      G       L++ ++Q G
Sbjct: 395 LIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQG 454

Query: 546 VEPDAYMFKVL 556
           + PD+  + VL
Sbjct: 455 LTPDSITYAVL 465



 Score = 46.6 bits (109), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 12/167 (7%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+ +  +  R  +A+ + EE+  S   PD+ +F+ L+      GD       F  +R
Sbjct: 322 YNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMR 381

Query: 543 QNGVEPDAYMFKVLIQAY---------CKYLSN---SNLMPDAATKELLKKSLWKEGRRK 590
           + G+ PD   +  LI+ +         C+           P+  T  +L   L + GR  
Sbjct: 382 EEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTA 441

Query: 591 EAAAVEERCEKINDVPSLALRGHIWAVSSADLTRVHSIYRNSITSIV 637
           EA  +  + ++    P       +  + S    +V    +N IT  V
Sbjct: 442 EAVDLYAKLKQQGLTPDSITYAVLERLQSGSHQKVRVRRKNPITGWV 488



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/151 (21%), Positives = 69/151 (45%), Gaps = 5/151 (3%)

Query: 98  FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVL 157
           FS+N      L +   ++ R  E   +  ++ +S      ++F +L+     +GD++   
Sbjct: 320 FSYN-----ILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAH 374

Query: 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217
             + E R+        +Y+ ++  + KT K   A   F +++ EG  PN  TY ++++ L
Sbjct: 375 MRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCL 434

Query: 218 VNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
              G+   A+++++ L    +   S  Y +L
Sbjct: 435 ERSGRTAEAVDLYAKLKQQGLTPDSITYAVL 465



 Score = 40.4 bits (93), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 12/160 (7%)

Query: 406 VYALEKMLTILARHGHVELVDRLIAKLRS---DGMRLPFSTIRLIIDFYGISKKADAALK 462
           +YA   ++  L++ GH     RL   + S   +G R  + ++   +   G + +A   L 
Sbjct: 216 IYAY--LVRTLSKLGHASEAHRLFCNMWSFHDEGDRDAYMSMLESLCDAGKTTEALDLLS 273

Query: 463 AFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
             H+ R     IS   +M  Y+++L  L K K+  D  ++ E+M   G  PD+ +++ L+
Sbjct: 274 KIHEKR-----ISTDTVM--YNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILI 326

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
             F   G  +   K+F  +  +  +PD   F  LI    K
Sbjct: 327 SSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGK 366



 Score = 40.0 bits (92), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 29/131 (22%), Positives = 58/131 (44%), Gaps = 12/131 (9%)

Query: 431 KLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRT 489
           +LR  G +L      +++D      K D     F D  R  C P         Y+ ++R 
Sbjct: 67  ELRRRGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDE-----YTYTIMIRM 121

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK---LFSMVRQNGV 546
             K  +  +++ + +EM   G  P++  ++ ++   A   + ++V K   LFS + +N  
Sbjct: 122 TGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALA---NNRMVDKTIFLFSKMVENNC 178

Query: 547 EPDAYMFKVLI 557
            P+ + F V++
Sbjct: 179 RPNGFTFSVIL 189


>gi|357159149|ref|XP_003578355.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Brachypodium distachyon]
          Length = 857

 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 101/261 (38%), Gaps = 34/261 (13%)

Query: 378 KVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM 437
           +VL+       A  FF W+  QPG+ HD +    M+ IL +     ++  L+ ++  D  
Sbjct: 336 QVLKLLHDHTMALGFFHWLKRQPGFKHDGHTYTTMIGILGQARQFGIMRNLLHEMNRDRC 395

Query: 438 RLPFSTIRLIIDFYGISKKADAALKAFHD--------DRTLCGPISKFKLMLLYSSLLRT 489
           +    T   II  YG +     A+K F +        DR            + Y +L+  
Sbjct: 396 KPTVVTYNRIIHAYGRANYLREAVKVFEEMEEAGYEPDR------------VTYCTLIDI 443

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
             K      A+++   M   G+ PD  T+S ++      G      KLF  + +NG  P+
Sbjct: 444 HAKAGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIENGCTPN 503

Query: 550 AYMFKVLI--QAYCKYLSN----------SNLMPDAATKELLKKSLWKEGRRKEAAAV-- 595
              + ++I  QA  +   N          +   PD  T  ++ + L   G   EA AV  
Sbjct: 504 LVTYNIIIALQAKARNYDNVVKLYRDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFI 563

Query: 596 EERCEKINDVPSLALRGHIWA 616
           E R +   D P   L   +W 
Sbjct: 564 EMRRDWAPDEPVYGLLVDLWG 584



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/247 (18%), Positives = 103/247 (41%), Gaps = 5/247 (2%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           +D F     L+   +   AL     LK  P F H+  T   +  +L ++++   ++ L+ 
Sbjct: 329 IDAFQANQVLKLLHDHTMALGFFHWLKRQPGFKHDGHTYTTMIGILGQARQFGIMRNLLH 388

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
           +++  +     V +  ++  Y  +  L   +  + E  +        +Y  ++ ++AK G
Sbjct: 389 EMNRDRCKPTVVTYNRIIHAYGRANYLREAVKVFEEMEEAGYEPDRVTYCTLIDIHAKAG 448

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
               A++ + ++ + G  P++ TY+ M+  L   G+L +A ++F  +           Y 
Sbjct: 449 YLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYN 508

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGAN----EFLRE 301
           I++        +D    L  +M+  G  P +    + +E +   G +  A     E  R+
Sbjct: 509 IIIALQAKARNYDNVVKLYRDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRRD 568

Query: 302 MLPDKRI 308
             PD+ +
Sbjct: 569 WAPDEPV 575



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 15/127 (11%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI-RLIIDFYGISKKADA 459
           G+  D      ++ +L   GH++  + +  ++R D    P   +  L++D +G +   D 
Sbjct: 534 GFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRRD--WAPDEPVYGLLVDLWGKAGNVDK 591

Query: 460 ALKAFH----DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
           AL  +H    D      P          +SLL    K  R  DA +VL+ M+  G+VP +
Sbjct: 592 ALGWYHAMLQDGLQPNVPTC--------NSLLSAFLKINRFQDAYSVLQNMLAQGLVPSL 643

Query: 516 QTFSGLM 522
           QT++ L+
Sbjct: 644 QTYTLLL 650


>gi|334182978|ref|NP_001185123.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|332193283|gb|AEE31404.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 811

 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 6/165 (3%)

Query: 67  LDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHEL 121
           ++P IVT+        S    D A  I E LK  P F  N  TL  L  VL K+      
Sbjct: 603 MEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTP-FGPNTVTLTILIHVLCKNNDMDGA 661

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
             +   ++       +V +  LM W+S S D+E     + E +++    S  SY+I++  
Sbjct: 662 IRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDG 721

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
             K G+  EA   F Q ID   +P+   Y ++I     +G+L  A
Sbjct: 722 LCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRLVEA 766



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 101/477 (21%), Positives = 186/477 (38%), Gaps = 44/477 (9%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + +  L+  Y  +G L +    +++   +   L    ++  + VY K+G    A   +++
Sbjct: 322 IAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKR 381

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++ +G  PN  TYT++I+ L   G++  A  ++  +    ++ +   Y  L++GF     
Sbjct: 382 MLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGN 441

Query: 258 FDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
                +L  +M   G  P   +  V ++ + + G +  A  F  +ML      NV  +  
Sbjct: 442 LRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNS 501

Query: 317 GSDDDEDEN--DDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTR 374
             D     N  D+     R+     +KP  D       +       VS++ DA       
Sbjct: 502 LIDGWCRLNRFDEALKVFRLMGIYGIKP--DVATFTTVMR------VSIMEDA------- 546

Query: 375 LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
             CK   H K P      F  +  +   + D+     ++ +L +   +E   +    L  
Sbjct: 547 -FCK---HMK-PTIGLQLF-DLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIE 600

Query: 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR-TLCGPISKFKLMLLYSSLLRTLTKC 493
             M     T   +I  Y   ++ D A + F   + T  GP +     +  + L+  L K 
Sbjct: 601 GKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNT-----VTLTILIHVLCK- 654

Query: 494 KRDFD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYM 552
             D D AI +   M   G  P+  T+  LM  F+   D +   KLF  +++ G+ P    
Sbjct: 655 NNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVS 714

Query: 553 FKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
           + ++I   CK               ++ L+PD     +L +   K GR  EAA + E
Sbjct: 715 YSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRLVEAALLYE 771



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 98/230 (42%), Gaps = 12/230 (5%)

Query: 347 KALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHF---KSPETAWHFFCWVAYQPGYT 403
           K L+    E +  ++SL+ D          C ++  F      + A+  F  V  Q G  
Sbjct: 260 KGLSVDQIEVASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLF-KVMEQRGIE 318

Query: 404 HDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKA 463
            D+ A   ++    + G + +  +L ++    G++L        ID Y   K  D A  +
Sbjct: 319 PDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVY--VKSGDLATAS 376

Query: 464 FHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
               R LC  IS    ++ Y+ L++ L +  R ++A  +  +++  G+ P + T+S L+ 
Sbjct: 377 VVYKRMLCQGISPN--VVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLID 434

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDA 573
            F   G+ +    L+  + + G  PD  ++ VL+      LS   LM  A
Sbjct: 435 GFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDG----LSKQGLMLHA 480



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 21/154 (13%)

Query: 471 CGPISKFKLMLLYSSLLRTLTK---CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
           CGP      ++ + +L+    K     R FD   V+E+    GI PD+  +S L+  +  
Sbjct: 280 CGPAPN---VVTFCTLINGFCKRGEMDRAFDLFKVMEQ---RGIEPDLIAYSTLIDGYFK 333

Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAAT 575
            G   +  KLFS     GV+ D  +F   I  Y K             +    + P+  T
Sbjct: 334 AGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVT 393

Query: 576 KELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA 609
             +L K L ++GR  EA  +  +  K    PS+ 
Sbjct: 394 YTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIV 427


>gi|297737369|emb|CBI26570.3| unnamed protein product [Vitis vinifera]
          Length = 1042

 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 20/215 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G+  D      +L   AR G+V+ V  +   +   G      T   II  YG   + D A
Sbjct: 334 GFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLA 393

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
            +  + D  L G   +    + Y+ L+ +L K     +A  V+ EM+ + + P ++TFS 
Sbjct: 394 FQ-LYSDMKLSG---RSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSA 449

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM---------- 570
           L+  +A  G     ++ F  + ++G++PD   + V++    ++  +   M          
Sbjct: 450 LICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHS 509

Query: 571 --PDAATKELLKKSLWKEGRRKEAAAV----EERC 599
             PD A  E++ + L KE R ++   V    EE C
Sbjct: 510 FKPDHALYEVMLRVLGKENREEDVHKVVKDMEELC 544



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 101/215 (46%), Gaps = 8/215 (3%)

Query: 67  LDPFIVTH-ALRSAPNADSALSIMEALKS-NPNFSHNQS----TLHALATVLAKSQRNHE 120
           + P I+T+  L SA + +S L   EA+K  N   +H       T +A+ +V  +   + E
Sbjct: 265 IQPDIITYNTLISACSRESNLE--EAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSRE 322

Query: 121 LKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS 180
              L  D+ S  FL  +V + +L+  ++  G+++ V     +  +        +YN ++ 
Sbjct: 323 AGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIH 382

Query: 181 VYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR 240
           +Y K G++  A + +  +   G  P++ TYTV+I+ L     +  A EV S +   R+K 
Sbjct: 383 MYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKP 442

Query: 241 TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           T + +  L+ G+    +  EA+   + M   G  P
Sbjct: 443 TLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKP 477



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 112/517 (21%), Positives = 194/517 (37%), Gaps = 49/517 (9%)

Query: 85  ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
           AL + E L     +S N   L  + +VL K+ +      +     ++    V V +  +M
Sbjct: 146 ALEVYEWLNLRHWYSPNARMLATILSVLGKANQEALAVEIFARAEAASGNTVQV-YNAMM 204

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE--AVETFRQVIDEG 202
             Y+ +G    V    +  R R       S+N +++   K+G      A+E   +V   G
Sbjct: 205 GVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSG 264

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY--LILVEGFVGVERFDE 260
             P+  TY  +I        L+ A++V++ +   R +     Y  +I V G  G+ R  E
Sbjct: 265 IQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSR--E 322

Query: 261 AKSLLNEMRDDGKFPGRAMRVA-LERMQEMGFIQGANEFLREML-----PDKRIKNVRYY 314
           A  L  ++   G  P      + L      G +    E   +M+      D+   N   +
Sbjct: 323 AGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIH 382

Query: 315 EDGSDDDED-----ENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF 369
             G     D      +D   SG R    V     +D    AN + E + EV+S + +A+ 
Sbjct: 383 MYGKRGQHDLAFQLYSDMKLSG-RSPDAVTYTVLIDSLGKANMIKE-AAEVMSEMLNARV 440

Query: 370 VWTTR----LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELV 425
             T R    L+C   +  K  E    F C +  + G   D  A   ML IL R       
Sbjct: 441 KPTLRTFSALICGYAKAGKRVEAEETFDCML--RSGIKPDHLAYSVMLDILLRFNESGKA 498

Query: 426 DRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLY-- 483
            +L  ++     +   +   +++   G   + +   K   D   LCG  S+    +L   
Sbjct: 499 MKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDMEELCGMNSQVICSILVKG 558

Query: 484 ------SSLLRTLTK--CK-------RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
                 +++LR      C+       RDF      EE+ F G++          YH  ++
Sbjct: 559 ECFDHAANMLRLAISQGCELDQYGKARDFGLFCGTEEL-FEGLLSKECKLDRSFYHIMMK 617

Query: 529 -----GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
                G+    +KL  ++++ GVEP      +L+ +Y
Sbjct: 618 MFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSY 654



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 79/185 (42%), Gaps = 18/185 (9%)

Query: 424 LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRT-LCGPISKFKLMLL 482
           L   L+ ++R  G++    T   +I         + A+K ++D     C P      +  
Sbjct: 252 LAIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPD-----LWT 306

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++++    +C    +A  + +++   G +PD  T++ L+Y FA +G+   V+++   + 
Sbjct: 307 YNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMV 366

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
           + G   D   +  +I  Y K             +  S   PDA T  +L  SL K    K
Sbjct: 367 KMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIK 426

Query: 591 EAAAV 595
           EAA V
Sbjct: 427 EAAEV 431


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 93/218 (42%), Gaps = 10/218 (4%)

Query: 65  RLLDPFIVTHALRSAPNA-------DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR 117
           R +DP I T++  S  N        D A  + E + S   F  N  T + L     K++R
Sbjct: 359 RSIDPDIFTYS--SLINGFCMHDRLDEAKHMFELMISKDCFP-NVVTYNTLINGFCKAKR 415

Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI 177
             E   L  ++S    +  +V +  L+  +  + D +     + +        +  +YN 
Sbjct: 416 IDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNT 475

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           ++    K GK  +A+  F  +      P   TY +MIE +   GK++   ++F +L L  
Sbjct: 476 LLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 535

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +K     Y  ++ GF      +EA +L  +MR+DG  P
Sbjct: 536 VKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLP 573



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 83/204 (40%), Gaps = 1/204 (0%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           V  +L    + D AL++   ++ N     N  T  +L + L   +R  +   L+ D+   
Sbjct: 266 VIDSLCKYRHEDDALNLFTEME-NKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIER 324

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
           K     V F  L+  +   G L      ++E  +R+      +Y+ +++ +    +  EA
Sbjct: 325 KINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 384

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
              F  +I +   PN  TY  +I       ++D  +E+F  +    +   +  Y  L+ G
Sbjct: 385 KHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHG 444

Query: 252 FVGVERFDEAKSLLNEMRDDGKFP 275
           F      D A+ +  +M  DG  P
Sbjct: 445 FFQARDCDNAQMVFKQMVSDGVHP 468



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 84/484 (17%), Positives = 188/484 (38%), Gaps = 46/484 (9%)

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L G +  S+ L     F  L+   +     +LV+S   + ++     +  +YNI+++ + 
Sbjct: 72  LFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFC 131

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           +  +   A+    +++  G  P+  T + ++    +  ++  A+ +   +  M  +  + 
Sbjct: 132 RRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTI 191

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
            +  L+ G     +  EA +L++ M   G  P      V +  + + G I  A   L +M
Sbjct: 192 TFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM 251

Query: 303 LPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVS 362
              K   NV  Y    D       ++++       + L   ++ K +   +  +S  +  
Sbjct: 252 EAAKIEANVVIYSTVIDSLCKYRHEDDA-------LNLFTEMENKGVRPNVITYSSLISC 304

Query: 363 LLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHV 422
           L    ++   +RL+  ++    +P                  +V     ++    + G +
Sbjct: 305 LCNYERWSDASRLLSDMIERKINP------------------NVVTFNALIDAFVKEGKL 346

Query: 423 ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK--FKLM 480
              ++L  ++    +     T   +I+ + +  + D A   F         ISK  F  +
Sbjct: 347 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL------MISKDCFPNV 400

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           + Y++L+    K KR  + + +  EM   G+V +  T++ L++ F    D    Q +F  
Sbjct: 401 VTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQ 460

Query: 541 VRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGR 588
           +  +GV P+   +  L+   CK            YL  S + P   T  ++ + + K G+
Sbjct: 461 MVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 520

Query: 589 RKEA 592
            ++ 
Sbjct: 521 VEDG 524



 Score = 40.8 bits (94), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 39/217 (17%), Positives = 88/217 (40%), Gaps = 25/217 (11%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G +H++Y    ++    R   + L   L+ K+   G      T+  +++ Y   K+   A
Sbjct: 115 GISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDA 174

Query: 461 LKAFHDDRTLCG--PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
           + A  D     G  P +     + +++L+  L    +  +A+ +++ M+  G  P++ T+
Sbjct: 175 V-ALVDQMVEMGYRPDT-----ITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTY 228

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSN 566
             ++     +GD  +   L + +    +E +  ++  +I + CKY            + N
Sbjct: 229 GVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMEN 288

Query: 567 SNLMPDAATKELLKKSL-----WKEGRRKEAAAVEER 598
             + P+  T   L   L     W +  R  +  +E +
Sbjct: 289 KGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERK 325



 Score = 40.8 bits (94), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 34/179 (18%), Positives = 69/179 (38%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
             SHN  T + L     +  +      L+G +    +    V   +L+  Y     +   
Sbjct: 115 GISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDA 174

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           ++  ++  +      T ++  ++       K  EAV    +++  G  PN  TY V++  
Sbjct: 175 VALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG 234

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           L   G +D A  + + +   +I+     Y  +++        D+A +L  EM + G  P
Sbjct: 235 LCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRP 293


>gi|255660834|gb|ACU25586.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 418

 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 84/178 (47%), Gaps = 2/178 (1%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V+F  LM  Y   GDL+      +            +Y+++++   K  K  EA E F +
Sbjct: 172 VSFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFXE 231

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++D+G +PN  T+T +I+     GK+D A+E++  +    +      Y  L+ G      
Sbjct: 232 MLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 291

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDK-RIKNVRY 313
             +A++L+NEM   G  P +     L +   + G ++ A E+ + M+ +  R+ +V Y
Sbjct: 292 LKQARNLINEMSMKGLKPDKITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAY 349



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 10/161 (6%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           D+Y    ++T     G +          R    R+PF T R +++ + +  K    +  F
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTREHKFRVPFDTCRKVLE-HLMKLKYFKLVWGF 123

Query: 465 HDDRTLCG-PISKFKLMLLYSSLLR--TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL 521
           + +   CG P S +   +L     +   +   +  FDAI         G+ P V +F+ L
Sbjct: 124 YKEILECGYPASLYFFNILMHRFCKEGEIRLSQSVFDAIRKW------GLRPSVVSFNTL 177

Query: 522 MYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           M  +  QGD     +L S +  +GV+PD Y + VLI   CK
Sbjct: 178 MNGYIRQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCK 218



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 84/209 (40%), Gaps = 1/209 (0%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T   L   L K  +  E   L  ++     +   V F  L+  +  +G ++L +  + + 
Sbjct: 208 TYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQM 267

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
             ++      +YN ++    K G   +A     ++  +G  P+  TYT +I+     G L
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTTLIDGSCKDGDL 327

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVA 282
           ++A E    +    I+     Y  L+ G     R  +A+ +L EM   G  P      + 
Sbjct: 328 ETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDSGTYTMI 387

Query: 283 LERMQEMGFIQGANEFLREMLPDKRIKNV 311
           +    + G +   ++ L+EM  D  + +V
Sbjct: 388 INEFCKKGDVWTGSKLLKEMQRDGHVPSV 416



 Score = 45.4 bits (106), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 1/130 (0%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           +NI+M  + K G+   +   F  +   G  P+  ++  ++   +  G LD    + SA+ 
Sbjct: 139 FNILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIRQGDLDKGFRLKSAMH 198

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQ 293
              ++     Y +L+ G     + DEA  L  EM D G  P G      ++   + G + 
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVD 258

Query: 294 GANEFLREML 303
            A E  ++ML
Sbjct: 259 LAMEIYKQML 268



 Score = 42.7 bits (99), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 87/206 (42%), Gaps = 20/206 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G    V +   ++    R G ++   RL + + + G++    T  ++I+      K D A
Sbjct: 166 GLRPSVVSFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEA 225

Query: 461 LKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
            + F +  D+ L  P       + +++L+    K  +   A+ + ++M+   + PD+ T+
Sbjct: 226 NELFXEMLDKGLV-PNG-----VTFTTLIDGHCKNGKVDLAMEIYKQMLSQSLSPDLITY 279

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSN 566
           + L+Y    +GD K  + L + +   G++PD   +  LI   C            K +  
Sbjct: 280 NTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTTLIDGSCKDGDLETAFEYRKRMIE 339

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEA 592
            N+  D      L   L +EGR  +A
Sbjct: 340 ENIRLDDVAYTALISGLCQEGRSVDA 365


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 97/487 (19%), Positives = 191/487 (39%), Gaps = 45/487 (9%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V++  ++  + T G ++   + + E   R    +  +Y  V+    K      A   F+Q
Sbjct: 204 VSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQ 263

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +ID+G  P++ TY  +I   +++GK    + +   +    +K     Y  L+       R
Sbjct: 264 MIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGR 323

Query: 258 FDEAKSLLNEMRDDGKFP----------GRAMRVALERMQEMGFIQGANEFLREMLPDKR 307
             EA+ L + M   G  P          G A + AL  M ++  +   N     + PD  
Sbjct: 324 CREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVEN----GLSPDHH 379

Query: 308 IKNVRYYEDGSDDDEDE-----NDDNNSGVR---IAYGVQLKPWLDPKALANTLDEWSPE 359
           I N+ +         DE     N     G+    + YG  +        + + + +++  
Sbjct: 380 IFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQM 439

Query: 360 VVSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILA 417
           +   +A   FV+ + +  +C V +  K+ E     F +     G   DV     +L  L 
Sbjct: 440 MNEGVAPNIFVFNSLVYGLCTVDKWEKAKE-----FYFEMLNQGIRPDVVFFNTILCNLC 494

Query: 418 RHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKF 477
             G V    RLI  +   G R    +   +I  + +  + D A K+   D  L   +   
Sbjct: 495 TKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSL--DVMLSVGLKPD 552

Query: 478 KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL 537
           +    Y++LL    +  R  DA  V  EM+ +GI P V T+S +++           ++L
Sbjct: 553 EWT--YNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKEL 610

Query: 538 FSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWK 585
           +  +  +G + + +++ +++    K             L + +   +  T  ++  +L+K
Sbjct: 611 YLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFK 670

Query: 586 EGRRKEA 592
            GR ++A
Sbjct: 671 SGRNEDA 677



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 100/520 (19%), Positives = 194/520 (37%), Gaps = 83/520 (15%)

Query: 148 STSGDLELVLSTWNEYRQRAKLLSTE---SYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204
           S++ + ELV+S +N   +   +  T    +Y+I++  + + G+      TF  ++  G  
Sbjct: 67  SSTTESELVVSLFNRMIRECTIKVTPDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWR 126

Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVF-SALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
            N+     +++ L +  +L  A+++    +P +        Y  L++GF   +R +EA  
Sbjct: 127 VNNIVINQLLKGLCDAKRLCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALE 186

Query: 264 LLNEMRDDGKFPGRAM-------RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
           LL+ M D     GR+         + +      G +  A     EM+      NV  Y  
Sbjct: 187 LLHMMADS---QGRSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTT 243

Query: 317 GSDD------------------DEDENDDNNSGVRIAYG-VQLKPWLDPKALANTLDEWS 357
             D                   D+    DN++   + +G + +  W   K +   L+E S
Sbjct: 244 VIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKW---KEVVRMLEEMS 300

Query: 358 -----PEVV---SLLA---------DAKFVWTTRL---------VCKVLRHFKSPETA-- 389
                P+     SLL          +A+F++ + +         +  +L H  + + A  
Sbjct: 301 AHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALS 360

Query: 390 -WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII 448
             H    +  + G + D +    + T  A+   ++    +  K++  G+         +I
Sbjct: 361 EMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALI 420

Query: 449 D-FYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMI 507
           D    + +  DA LK          P      + +++SL+  L    +   A     EM+
Sbjct: 421 DALCKLGRVDDAVLKFNQMMNEGVAPN-----IFVFNSLVYGLCTVDKWEKAKEFYFEML 475

Query: 508 FSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------ 561
             GI PDV  F+ ++ +   +G     Q+L  ++ + G  P    +  LI  +C      
Sbjct: 476 NQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRID 535

Query: 562 ------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
                   + +  L PD  T   L     + GR  +A  V
Sbjct: 536 EAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGV 575



 Score = 43.5 bits (101), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 74/164 (45%), Gaps = 9/164 (5%)

Query: 74  HALRSAPNADSALSIMEALKSN---PNFSHNQSTLHALATVLAKSQRNHELKTL-IGDIS 129
           H    A   D A  +   +  N   P      + LH L T    ++R  E K L +  I+
Sbjct: 561 HGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFT----TRRFSEAKELYLNMIT 616

Query: 130 SSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF 189
           S K  N+ + +  ++   S +  ++     +     +   L   ++NI++    K+G+N 
Sbjct: 617 SGKQWNIWI-YNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNE 675

Query: 190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +A+  F  +   G +P+  TY ++ E+L+  G L+   ++FSA+
Sbjct: 676 DAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAM 719



 Score = 42.7 bits (99), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 78/168 (46%), Gaps = 20/168 (11%)

Query: 452 GISKK--ADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIF 508
           G+SK    D A K F   ++LC     F+L +  ++ ++  L K  R+ DA+++   +  
Sbjct: 632 GLSKNNCVDEAFKLF---QSLCS--KDFQLEITTFNIMIGALFKSGRNEDAMHLFATISS 686

Query: 509 SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ---------- 558
            G+VPDV T+  +  +   +G  +    LFS + ++G  P++ M   L++          
Sbjct: 687 YGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITR 746

Query: 559 --AYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND 604
             AY   L   N   +A+T  +L   L ++     A ++ E+   +N+
Sbjct: 747 AGAYLCKLDEKNFSLEASTTAMLISLLSRDEYHHHATSLPEKYRVLNE 794


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 99/232 (42%), Gaps = 2/232 (0%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + H   S  N + A  I++A++       +  T  +L + + K  R  E   L   +   
Sbjct: 214 IIHGYSSRGNIEGARRILDAMRVK-GIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEI 272

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
             +  +V +  L+  Y   GDLE   S  +E  ++  + S  +YN+++      G+  EA
Sbjct: 273 GLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEA 332

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
            +  +++  +G IP++ TY ++I      G    A ++ + +    I+ T   Y  L+  
Sbjct: 333 DDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYV 392

Query: 252 FVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREM 302
                R  EA  L  ++ D G  P   M  A+ +     G ++ A   L+EM
Sbjct: 393 LSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEM 444



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 18/127 (14%)

Query: 481 LLYSSLLRTLTKC---KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL 537
           + Y+ L+   ++C   KR FD  N   EM+  GI P   T++ L+Y  + +   K    L
Sbjct: 349 ITYNILINGYSRCGNAKRAFDLHN---EMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDL 405

Query: 538 FSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWK 585
           F  +   GV PD  MF  +I  +C            K +   ++ PD  T   L +   +
Sbjct: 406 FEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCR 465

Query: 586 EGRRKEA 592
           EG+ +EA
Sbjct: 466 EGKVEEA 472



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 12/117 (10%)

Query: 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           +L+ M   GI PD  T+  L+     +G  +    LF  + + G+ P+A  +  LI  YC
Sbjct: 230 ILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYC 289

Query: 562 KY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
                         +    +MP  +T  LL  +L+ EGR  EA  + +   K   +P
Sbjct: 290 NKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIP 346



 Score = 46.6 bits (109), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 35/173 (20%), Positives = 75/173 (43%)

Query: 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
           ST + L   L    R  E   +I ++     +  ++ +  L+  YS  G+ +      NE
Sbjct: 314 STYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNE 373

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
              +    +  +Y  ++ V ++  +  EA + F +++D+G  P+   +  MI+     G 
Sbjct: 374 MLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGN 433

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           ++ A  +   +    +      +  L++G     + +EA+ LL+EM+  G  P
Sbjct: 434 VERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKP 486



 Score = 42.4 bits (98), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 63/136 (46%), Gaps = 17/136 (12%)

Query: 486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
           LL    K  R+F  I  +E +   G  P+V +++ +++ ++ +G+ +  +++   +R  G
Sbjct: 184 LLEGKLKKAREF--IGFMEGL---GFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKG 238

Query: 546 VEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
           +EPD+Y +  LI   CK             +    L+P+A T   L      +G  + A 
Sbjct: 239 IEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAF 298

Query: 594 AVEERCEKINDVPSLA 609
           +  +   K   +PS++
Sbjct: 299 SYRDEMVKKGIMPSVS 314



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 35/64 (54%)

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A +  +EM+  GI+P V T++ L++   ++G       +   +R+ G+ PDA  + +LI 
Sbjct: 297 AFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILIN 356

Query: 559 AYCK 562
            Y +
Sbjct: 357 GYSR 360



 Score = 40.4 bits (93), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 50/123 (40%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F  LMQ     G +E      +E + R       SYN ++S Y + G   +A     +
Sbjct: 454 VTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDE 513

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++  G  P   TY  +I+ L    + D A E+   +    I      YL L+EG   V+ 
Sbjct: 514 MLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNVDT 573

Query: 258 FDE 260
             E
Sbjct: 574 LVE 576


>gi|147778635|emb|CAN76113.1| hypothetical protein VITISV_005528 [Vitis vinifera]
          Length = 466

 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 4/152 (2%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           AD  L+ M+AL        N++T  AL     ++ R +++  +IG++S   F   S  + 
Sbjct: 131 ADKVLAEMDAL----GIGRNRATYEALVDYYGRAGRLNDVWAVIGEMSRDGFGPDSFVYS 186

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            ++  Y  +G  +  +    E R+    L    YN ++  + K G+  EA+E F ++ +E
Sbjct: 187 KVIGVYRDNGMWKKAMEIVREIREMGVSLDKRIYNSIIDTFGKCGELSEALEVFEKMQEE 246

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           G  P+  T+  +I+     G +  ALE+FS +
Sbjct: 247 GVKPDIMTWNSLIQWHCKAGDVGKALELFSKM 278



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 31/188 (16%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D+     ML    R G +EL D+++A++ + G+    +T   ++D+YG + + +  
Sbjct: 107 GLKLDLRVYNVMLRSCLRKGLLELADKVLAEMDALGIGRNRATYEALVDYYGRAGRLNDV 166

Query: 461 LKAFHD-DRTLCGP---------------------------ISKFKLML---LYSSLLRT 489
                +  R   GP                           I +  + L   +Y+S++ T
Sbjct: 167 WAVIGEMSRDGFGPDSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSLDKRIYNSIIDT 226

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
             KC    +A+ V E+M   G+ PD+ T++ L+      GD     +LFS +++ G+ PD
Sbjct: 227 FGKCGELSEALEVFEKMQEEGVKPDIMTWNSLIQWHCKAGDVGKALELFSKMQEEGLYPD 286

Query: 550 AYMFKVLI 557
             +F  +I
Sbjct: 287 PKIFITII 294



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 6/147 (4%)

Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           LS  SY  V+      G+  EA   FR+++  G   + R Y VM+   +  G L+ A +V
Sbjct: 75  LSLGSYTTVIEALGSVGRTLEAEAIFREMVHLGLKLDLRVYNVMLRSCLRKGLLELADKV 134

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQE 288
            + +  + I R    Y  LV+ +    R ++  +++ EM  DG  P        +   ++
Sbjct: 135 LAEMDALGIGRNRATYEALVDYYGRAGRLNDVWAVIGEMSRDGFGPDSFVYSKVIGVYRD 194

Query: 289 MGFIQGANEFLREMLP-----DKRIKN 310
            G  + A E +RE+       DKRI N
Sbjct: 195 NGMWKKAMEIVREIREMGVSLDKRIYN 221


>gi|15233142|ref|NP_191058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210358|sp|Q9SV46.1|PP282_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g54980, mitochondrial; Flags: Precursor
 gi|4678295|emb|CAB41086.1| putative protein [Arabidopsis thaliana]
 gi|28393168|gb|AAO42016.1| unknown protein [Arabidopsis thaliana]
 gi|332645801|gb|AEE79322.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 851

 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 100/425 (23%), Positives = 175/425 (41%), Gaps = 48/425 (11%)

Query: 174 SYNIVMSVYAKTG--KNFEAVET---FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALE 228
           S N+V +    TG  KN + V     F ++  EG  PNS T++V+IE     G+++ ALE
Sbjct: 336 SMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALE 395

Query: 229 VFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQE 288
            +  + ++ +  +      +++G++  ++ +EA  L +E  + G          L  + +
Sbjct: 396 FYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGLANVFVCNTILSWLCK 455

Query: 289 MGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKA 348
            G    A E L +M       NV  Y +       +   N    RI +   L+  L P  
Sbjct: 456 QGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQK--NMDLARIVFSNILEKGLKPNN 513

Query: 349 LANTLDEWSPEVVSLLADAKF-VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY 407
                        S+L D  F     +   +V+ H  S     +    V YQ        
Sbjct: 514 YT----------YSILIDGCFRNHDEQNALEVVNHMTSSNIEVN---GVVYQ-------- 552

Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL--IIDFYGISKKADAALKAFH 465
               ++  L + G       L+A +  +  RL  S +    IID +    + D+A+ A+ 
Sbjct: 553 ---TIINGLCKVGQTSKARELLANMIEE-KRLCVSCMSYNSIIDGFFKEGEMDSAVAAYE 608

Query: 466 DDRTLCG-PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
           +   +CG  IS    ++ Y+SL+  L K  R   A+ + +EM   G+  D+  +  L+  
Sbjct: 609 E---MCGNGISPN--VITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDG 663

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLW 584
           F  + + +    LFS + + G+ P   ++  LI  +       NL    A  +L KK L 
Sbjct: 664 FCKRSNMESASALFSELLEEGLNPSQPIYNSLISGF------RNLGNMVAALDLYKKML- 716

Query: 585 KEGRR 589
           K+G R
Sbjct: 717 KDGLR 721



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 90/197 (45%), Gaps = 11/197 (5%)

Query: 117 RNHELKTLIGDISSSKFLNVSVNFM-------NLMQWYSTSGDLELVLSTWNEYRQRAKL 169
           RNH+ +  +  ++     N+ VN +        L +   TS   EL+ +   E R     
Sbjct: 525 RNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRL---C 581

Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           +S  SYN ++  + K G+   AV  + ++   G  PN  TYT ++  L    ++D ALE+
Sbjct: 582 VSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEM 641

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQE 288
              +    +K     Y  L++GF      + A +L +E+ ++G  P + +  +L    + 
Sbjct: 642 RDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRN 701

Query: 289 MGFIQGANEFLREMLPD 305
           +G +  A +  ++ML D
Sbjct: 702 LGNMVAALDLYKKMLKD 718



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 88/475 (18%), Positives = 182/475 (38%), Gaps = 40/475 (8%)

Query: 89  MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS 148
           ME L   P+  H    +H +     K Q++ E   L  +   +   NV V    ++ W  
Sbjct: 400 MEVLGLTPSVFH----VHTIIQGWLKGQKHEEALKLFDESFETGLANVFV-CNTILSWLC 454

Query: 149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE-AVETFRQVIDEGAIPNS 207
             G  +      ++   R    +  SYN VM  + +  KN + A   F  ++++G  PN+
Sbjct: 455 KQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQ-KNMDLARIVFSNILEKGLKPNN 513

Query: 208 RTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNE 267
            TY+++I+         +ALEV + +    I+     Y  ++ G   V +  +A+ LL  
Sbjct: 514 YTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLAN 573

Query: 268 MRDDGKFPGRAM--RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDEN 325
           M ++ +     M     ++   + G +  A     EM  +    NV  Y    +     N
Sbjct: 574 MIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNN 633

Query: 326 DDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKS 385
                  R+   ++++  +  K +   +  +   +      +     + L  ++L    +
Sbjct: 634 -------RMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLN 686

Query: 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR 445
           P            QP Y   +     +       G++     L  K+  DG+R    T  
Sbjct: 687 PS-----------QPIYNSLISGFRNL-------GNMVAALDLYKKMLKDGLRCDLGTYT 728

Query: 446 LIIDFYGISKKADAALKA-FHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLE 504
            +ID  G+ K  +  L +  + +    G +      ++Y+ ++  L+K  +    + + E
Sbjct: 729 TLID--GLLKDGNLILASELYTEMQAVGLVPD---EIIYTVIVNGLSKKGQFVKVVKMFE 783

Query: 505 EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
           EM  + + P+V  ++ ++     +G+     +L   +   G+ PD   F +L+  
Sbjct: 784 EMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILVSG 838



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 84/187 (44%), Gaps = 17/187 (9%)

Query: 418 RHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKF 477
           ++G +E       K+   G+      +  II  +   +K + ALK F D+    G  + F
Sbjct: 386 KNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLF-DESFETGLANVF 444

Query: 478 KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL 537
               + +++L  L K  +  +A  +L +M   GI P+V +++ +M     Q +  + + +
Sbjct: 445 ----VCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIV 500

Query: 538 FSMVRQNGVEPDAYMFKVLIQA------------YCKYLSNSNLMPDAATKELLKKSLWK 585
           FS + + G++P+ Y + +LI                 ++++SN+  +    + +   L K
Sbjct: 501 FSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCK 560

Query: 586 EGRRKEA 592
            G+  +A
Sbjct: 561 VGQTSKA 567


>gi|297737146|emb|CBI26347.3| unnamed protein product [Vitis vinifera]
          Length = 862

 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 40/228 (17%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           + AL I E LK    +  N    + +  +L K+++ H +++L  ++ S     V+  +  
Sbjct: 177 ERALEIFEWLKKKGCYELNVIHYNIMLRILGKARKWHHVESLWDEMMSRGITPVNSTYGT 236

Query: 143 LMQWYSTSGDLE----------------------LVLSTW---NEYRQRAKL-------- 169
           L+  YS  G  E                      +V+ T+    E+++  +         
Sbjct: 237 LIDVYSKGGLTEEALHWLDRMNKQGMEPDEVTMGVVVQTYKKAGEFKKAEQFFKNWSLES 296

Query: 170 -------LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
                  LS+ +YN ++  Y K G+  EA +TF  ++ EG IPN+ T+  MI    N G+
Sbjct: 297 ASQPHVCLSSYTYNTLIDTYGKAGQLREASDTFAWMLREGIIPNTVTFNTMIHICGNHGQ 356

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
           L+ A  +   +  +R    ++ Y IL+         D A S   +M++
Sbjct: 357 LEEAASLMQKMEELRCPPDTRTYNILISLHAKHNNIDRAASYFKKMKE 404


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 82/169 (48%), Gaps = 1/169 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+  Y  +  ++  +  + E   +  + +T +YN ++  + ++GK   A E F++
Sbjct: 415 VTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQE 474

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++  G  P+  TY ++++ L + G+L+ ALE+F  +   R+      Y I++ G     +
Sbjct: 475 MVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASK 534

Query: 258 FDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPD 305
            D+A SL   + D G  P      V +  + + G +  A+   R+M  D
Sbjct: 535 VDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKED 583



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 83/201 (41%), Gaps = 18/201 (8%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G+  D      +L  L + G+  L   L  K+    ++       ++ID        D A
Sbjct: 234 GFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDA 293

Query: 461 LKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           L  F++       +   K  ++ YSSL+  L    +  D   +L EMI   I+PDV TFS
Sbjct: 294 LSLFNEME-----MKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFS 348

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--YLSNSNLM------- 570
            L+  F  +G     ++L++ +   G+ PD   +  LI  +CK   L  +N M       
Sbjct: 349 ALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSK 408

Query: 571 ---PDAATKELLKKSLWKEGR 588
              PD  T  +L  S  K  R
Sbjct: 409 GCEPDIVTYSILINSYCKAKR 429



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 78/411 (18%), Positives = 163/411 (39%), Gaps = 39/411 (9%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y  V++   K+G +  A++ FR++ +     +   Y+++I+ L   G  D AL +F+ +
Sbjct: 241 TYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM 300

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFI 292
            +  IK     Y  L+ G     ++D+   +L EM      P      AL +   + G +
Sbjct: 301 EMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKL 360

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
             A E   EM+      +   Y    D    EN  + +        Q+   +  K     
Sbjct: 361 LEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEAN-------QMFDLMVSKG---- 409

Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
                P++V+      +       CK     K  +     F  ++ + G   +      +
Sbjct: 410 ---CEPDIVT------YSILINSYCKA----KRVDDGMRLFREISSK-GLIPNTITYNTL 455

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
           +    + G +     L  ++ S G+     T  +++D    + + + AL+ F        
Sbjct: 456 VLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFE------- 508

Query: 473 PISKFKLML---LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
            + K ++ L   +Y+ ++  +    +  DA ++   +   G+ PDV T++ ++     +G
Sbjct: 509 KMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKG 568

Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLK 580
                  LF  ++++G  PD + + +LI+A   +L  S L+      E +K
Sbjct: 569 SLSEADMLFRKMKEDGCTPDDFTYNILIRA---HLGGSGLISSVELIEEMK 616



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 72/178 (40%), Gaps = 1/178 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F  L+  +   G L      +NE   R     T +YN ++  + K     EA + F  
Sbjct: 345 VTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDL 404

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++ +G  P+  TY+++I       ++D  + +F  +    +   +  Y  LV GF    +
Sbjct: 405 MVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGK 464

Query: 258 FDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
            + AK L  EM   G  P      + L+ + + G +  A E   +M   +    +  Y
Sbjct: 465 LNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIY 522



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 88/223 (39%), Gaps = 6/223 (2%)

Query: 55  SNSLSSLLNDRLLDPFIVTHAL-----RSAPNADSALSIMEALKSNPNFSHNQSTLHALA 109
           +N +  L+  +  +P IVT+++       A   D  + +   + S+     N  T + L 
Sbjct: 398 ANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREI-SSKGLIPNTITYNTLV 456

Query: 110 TVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKL 169
               +S + +  K L  ++ S       V +  L+     +G+L   L  + + ++    
Sbjct: 457 LGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMT 516

Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           L    YNI++       K  +A   F  + D+G  P+  TY VMI  L   G L  A  +
Sbjct: 517 LGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADML 576

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           F  +           Y IL+   +G      +  L+ EM+  G
Sbjct: 577 FRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCG 619



 Score = 46.2 bits (108), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 75/187 (40%), Gaps = 4/187 (2%)

Query: 89  MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS 148
           M  +K  P+      T+  L   L    R  E   LI  +    F    V +  ++    
Sbjct: 195 MVEMKQRPDLV----TVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLC 250

Query: 149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSR 208
            SG+  L L  + +  +R    S   Y+IV+    K G   +A+  F ++  +G   +  
Sbjct: 251 KSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVV 310

Query: 209 TYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           TY+ +I  L N GK D   ++   +    I      +  L++ FV   +  EAK L NEM
Sbjct: 311 TYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEM 370

Query: 269 RDDGKFP 275
              G  P
Sbjct: 371 ITRGIAP 377



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 99/515 (19%), Positives = 199/515 (38%), Gaps = 101/515 (19%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWN---EYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE 193
           ++ F  L+  +   G +   ++  +   E +QR  L++  +   +++     G+  EA+ 
Sbjct: 169 TITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVST---LINGLCLKGRVSEALV 225

Query: 194 TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
              ++++ G  P+  TY  ++  L   G    AL++F  +    IK +  QY I+++   
Sbjct: 226 LIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLC 285

Query: 254 GVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIK-NVR 312
                            DG F       AL    EM           EM   K IK +V 
Sbjct: 286 ----------------KDGSFDD-----ALSLFNEM-----------EM---KGIKADVV 310

Query: 313 YYED--GSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFV 370
            Y    G   ++ + DD    +R   G  + P  D    +  +D +  E        K +
Sbjct: 311 TYSSLIGGLCNDGKWDDGAKMLREMIGRNIIP--DVVTFSALIDVFVKE-------GKLL 361

Query: 371 WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIA 430
               L  +++    +P+T       + Y      D +  E  L     H   ++ D +++
Sbjct: 362 EAKELYNEMITRGIAPDT-------ITYNS--LIDGFCKENCL-----HEANQMFDLMVS 407

Query: 431 KLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM---LLYSSLL 487
           K    G      T  ++I+ Y  +K+ D  ++ F +       IS   L+   + Y++L+
Sbjct: 408 K----GCEPDIVTYSILINSYCKAKRVDDGMRLFRE-------ISSKGLIPNTITYNTLV 456

Query: 488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE 547
               +  +   A  + +EM+  G+ P V T+  L+      G+     ++F  ++++ + 
Sbjct: 457 LGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMT 516

Query: 548 PDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
               ++ ++I   C              LS+  + PD  T  ++   L K+G   EA  +
Sbjct: 517 LGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADML 576

Query: 596 -----EERCEKINDVPSLALRGHIWA---VSSADL 622
                E+ C   +   ++ +R H+     +SS +L
Sbjct: 577 FRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVEL 611



 Score = 42.4 bits (98), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 12/124 (9%)

Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           DAI++ E MI S  +P    F+ L    A      +V      +  NG+E D Y   ++I
Sbjct: 82  DAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMI 141

Query: 558 QAYC---KYLSNSNLM---------PDAATKELLKKSLWKEGRRKEAAAVEERCEKINDV 605
             YC   K L   +++         PD  T   L      EGR  EA A+ +R  ++   
Sbjct: 142 NCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQR 201

Query: 606 PSLA 609
           P L 
Sbjct: 202 PDLV 205


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 1/193 (0%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L K++   E   L  ++ S      +V + +L+      G +       NE   R +   
Sbjct: 354 LCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPAD 413

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
             +Y+ ++    K  +  +A+    ++ D+G  PN  TYT++++ L   G+L  A  V+ 
Sbjct: 414 VITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQ 473

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER-MQEMG 290
            L +       K Y ++V G      FDEA SL+++M D+G  P       L R + E  
Sbjct: 474 DLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLVRALFEND 533

Query: 291 FIQGANEFLREML 303
               A + LREM+
Sbjct: 534 KNDKAVKLLREMI 546



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 78/189 (41%), Gaps = 31/189 (16%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL--- 461
           D++    ++      GH+     ++AK+   G      TI  +I    ++ K   AL   
Sbjct: 98  DLFTFNILINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREALHFH 157

Query: 462 -----KAFHDDRTLCGPI---------SKFKLMLL--------------YSSLLRTLTKC 493
                K FH D+   G +         ++  L +L              Y++++ +L K 
Sbjct: 158 DDVIAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKD 217

Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
           K    A ++  EMI   I PDV T++ L+Y   + G  K    LF+ +    ++PD Y F
Sbjct: 218 KLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTF 277

Query: 554 KVLIQAYCK 562
            +L+   CK
Sbjct: 278 NILVDGLCK 286



 Score = 45.8 bits (107), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 95/432 (21%), Positives = 161/432 (37%), Gaps = 64/432 (14%)

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
           GK  EA+     VI +G   +  +Y  +I  L   G+  +AL+V   +  + ++     Y
Sbjct: 148 GKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMY 207

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-------ERMQE-MGFIQGANE 297
             +++     +    A  L +EM     FP       L        R++E +G       
Sbjct: 208 NTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFN--QM 265

Query: 298 FLREMLPDKRIKNVRYYEDG-SDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEW 356
            L+ + PD    N+    DG   + E +   N   V I  GV           +N +   
Sbjct: 266 LLKNIKPDVYTFNILV--DGLCKEGEMKKARNVLAVMIKQGVD----------SNIVTYN 313

Query: 357 SPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTIL 416
           S      L D  F+             K    A   F  +A + G T DV +   M+  L
Sbjct: 314 S------LMDGYFL------------VKQENKATFVFNTMARR-GVTPDVQSYSIMINGL 354

Query: 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF---YGISKKADAALKAFHDDRTLCGP 473
            +   V+    L  ++ S  M     T   +ID    YG    A   +   H+       
Sbjct: 355 CKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADV 414

Query: 474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
           I+       YSSLL  L K  +   AI ++ ++   GI P++ T++ L+      G  K 
Sbjct: 415 IT-------YSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKD 467

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKK 581
            Q ++  +   G   D  M+ V++   CK             + ++  +PDA T E L +
Sbjct: 468 AQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLVR 527

Query: 582 SLWKEGRRKEAA 593
           +L++  +  +A 
Sbjct: 528 ALFENDKNDKAV 539



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 84/207 (40%), Gaps = 20/207 (9%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           DVY    ++  L + G ++    ++A +   G+     T   ++D Y + K+ + A   F
Sbjct: 273 DVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVF 332

Query: 465 HD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
           +    R +   +        YS ++  L K K   +A+N+ +EM    + P+  T++ L+
Sbjct: 333 NTMARRGVTPDVQS------YSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLI 386

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLM 570
                 G       L + +   G   D   +  L+ A CK             + +  + 
Sbjct: 387 DGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQ 446

Query: 571 PDAATKELLKKSLWKEGRRKEAAAVEE 597
           P+  T  +L   L K GR K+A AV +
Sbjct: 447 PNIYTYTILVDGLCKNGRLKDAQAVYQ 473



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 48/100 (48%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN +M  Y    +  +A   F  +   G  P+ ++Y++MI  L     +D A+ +F  +
Sbjct: 311 TYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEM 370

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
               +   +  Y  L++G +   R  +A  L+NEM + G+
Sbjct: 371 HSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQ 410



 Score = 43.1 bits (100), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 36/179 (20%), Positives = 80/179 (44%), Gaps = 1/179 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V + +LM  Y            +N   +R      +SY+I+++   KT    EAV  F++
Sbjct: 310 VTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKE 369

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +  +   PN+ TY  +I+ L+  G++  A ++ + +           Y  L++      +
Sbjct: 370 MHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQ 429

Query: 258 FDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
            D+A +L+ +++D G  P      + ++ + + G ++ A    +++L      +V+ Y 
Sbjct: 430 VDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYN 488


>gi|356547390|ref|XP_003542095.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02650,
           mitochondrial-like [Glycine max]
          Length = 539

 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 55/101 (54%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           +N V++ Y+K G+  +AVE  R +   G  P+  TYTV+     N G+++ A ++ +   
Sbjct: 375 FNFVVTAYSKAGEMGKAVEMMRLMESRGLRPDVYTYTVLASAYSNGGEMEEAQKILAEAK 434

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              +K     +  L+ G+  +E+FDEA  LL EM+D G  P
Sbjct: 435 KKHVKLGPVMFHTLIRGYCKLEQFDEALKLLAEMKDYGVRP 475



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 8/139 (5%)

Query: 169 LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK-LDSAL 227
           L   E    ++S   K  K  EA   +    ++G +P     + ++  L    + + SAL
Sbjct: 263 LPDAEKVGAILSWLCKGKKAKEAHGVYVVATEKGKLPPVNVVSFLVLKLCGEDETVKSAL 322

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA----MRVAL 283
           E+   +P  + +R  K +L +V     ++  D+AK LL +M ++G  PG A    +  A 
Sbjct: 323 EILEDIPEEKRERAIKPFLAVVRALCRIKEVDKAKELLLKMIENGPPPGNAVFNFVVTAY 382

Query: 284 ERMQEMGFIQGANEFLREM 302
            +  EMG    A E +R M
Sbjct: 383 SKAGEMG---KAVEMMRLM 398


>gi|242086476|ref|XP_002443663.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
 gi|241944356|gb|EES17501.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
          Length = 853

 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 107/276 (38%), Gaps = 18/276 (6%)

Query: 355 EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT 414
           +W P    +L +           +VL+       A  FF W+  QPG+ HD +    M+ 
Sbjct: 309 KWGPMTEHVLDNLHCKIDAFQANQVLKLLHDHTVALGFFQWLKRQPGFKHDGHTYTTMIG 368

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI 474
           IL +     ++ +L+ ++     +    T   II  YG +     A+K F + +      
Sbjct: 369 ILGQARQFGVLKKLLDEMSRAHCKPTVVTYNRIIHAYGRANYLKEAVKVFEEMQEAGYEP 428

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
            +    + Y +L+    K      A+++   M   G+ PD  T+S ++      G     
Sbjct: 429 DR----VTYCTLIDIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAA 484

Query: 535 QKLFSMVRQNGVEPDAYMFKVLI--QAYCKYLSN----------SNLMPDAATKELLKKS 582
            KLF  + +NG  P+   + ++I  QA  +   N          +   PD  T  ++ + 
Sbjct: 485 YKLFCEMIENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEV 544

Query: 583 LWKEGRRKEAAAV--EERCEKINDVPSLALRGHIWA 616
           L   G   EA AV  E R +   D P   L   +W 
Sbjct: 545 LGHCGHLDEAEAVFIEMRRDWAPDEPVYGLLVDLWG 580



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/247 (19%), Positives = 106/247 (42%), Gaps = 5/247 (2%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           +D F     L+   +   AL   + LK  P F H+  T   +  +L ++++   LK L+ 
Sbjct: 325 IDAFQANQVLKLLHDHTVALGFFQWLKRQPGFKHDGHTYTTMIGILGQARQFGVLKKLLD 384

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
           ++S +      V +  ++  Y  +  L+  +  + E ++        +Y  ++ ++AK G
Sbjct: 385 EMSRAHCKPTVVTYNRIIHAYGRANYLKEAVKVFEEMQEAGYEPDRVTYCTLIDIHAKAG 444

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
               A++ + ++ + G  P++ TY+ M+  L   G+L +A ++F  +           Y 
Sbjct: 445 YLDIAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYN 504

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGAN----EFLRE 301
           I++        ++    L  +M+  G  P +    + +E +   G +  A     E  R+
Sbjct: 505 IMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRRD 564

Query: 302 MLPDKRI 308
             PD+ +
Sbjct: 565 WAPDEPV 571


>gi|147797511|emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
          Length = 814

 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 84/196 (42%), Gaps = 1/196 (0%)

Query: 108 LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA 167
           L   L K +R+ E    + ++    FL   V +   +  +     ++  L  + +   R 
Sbjct: 528 LVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARG 587

Query: 168 KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227
                 +YN +++ + K  +  EA +   +++ +G +P+  TY ++I+     G +D A 
Sbjct: 588 YCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAF 647

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERM 286
              S +     +     Y  L++G     R D+A  L NEMR  G  P R   +AL   +
Sbjct: 648 HCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGL 707

Query: 287 QEMGFIQGANEFLREM 302
            + G+   A  + REM
Sbjct: 708 CKCGWPDAALLYFREM 723



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 87/187 (46%), Gaps = 5/187 (2%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
            F+HN  T +A+A+ L+ +++N  L  L  DI +S+   +S   +  +   S SG ++LV
Sbjct: 123 GFNHNCYTYNAMASCLSHARQNAPLSLLSMDIVNSR-CAMSPGALGAI---SKSGSIDLV 178

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
                E           +   V+  Y  + K  +A+  F ++   G + +    ++++  
Sbjct: 179 EMRLKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWV-DGHVLSILVLT 237

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
               G++D A E+   +  + I+   K + +L+ GFV   R D+A  L  +M+  G  P 
Sbjct: 238 FSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPD 297

Query: 277 RAMRVAL 283
            ++  AL
Sbjct: 298 VSVYDAL 304



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 90/221 (40%), Gaps = 36/221 (16%)

Query: 372 TTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILA-------------- 417
           T  +V  VL   KS + A+ FF W + Q G+ H+ Y    M + L+              
Sbjct: 94  THEVVENVLSGLKSWKIAYRFFNWASDQGGFNHNCYTYNAMASCLSHARQNAPLSLLSMD 153

Query: 418 -----------------RHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
                            + G ++LV+  + ++   G      T+  ++  Y  S+K D A
Sbjct: 154 IVNSRCAMSPGALGAISKSGSIDLVEMRLKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKA 213

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           L  F++     G +    L    S L+ T +KC     A  ++E M   GI  + +TF  
Sbjct: 214 LSVFNEIYGR-GWVDGHVL----SILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCV 268

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           L++ F  Q       +LF  ++++G  PD  ++  LI   C
Sbjct: 269 LIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLC 309



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 163/407 (40%), Gaps = 55/407 (13%)

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
           NFE  + F  ++ E   P + +++++I+ L N GKLD AL +F  +  +  K+    Y  
Sbjct: 400 NFEVNKFF--MVKEMVRPXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNN 457

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDG----KFPGRAMRVALERMQEMGFIQGANEFLREML 303
           L++      R +E   LL EM+  G    +F   ++   L R ++   + GA + +REM 
Sbjct: 458 LIDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRRED---VTGALDMVREMR 514

Query: 304 PDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDE-----WSP 358
                  +++Y                        QL          N L E     + P
Sbjct: 515 VHGHEPWIKHY-------------------TLLVKQLCKRKRSAEACNFLAEMVREGFLP 555

Query: 359 EVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILAR 418
           ++V+  A        + V + L  F+         C   Y P    DV A   ++    +
Sbjct: 556 DIVAYSAAIDGFVKIKAVDQALEIFRD-------ICARGYCP----DVVAYNTLINGFCK 604

Query: 419 HGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFK 478
              V     ++ ++ + G+     T  L+ID  G  K  D   +AFH    + G   +  
Sbjct: 605 VKRVSEAHDILDEMVAKGLVPSVVTYNLLID--GWCKNGDID-QAFHCLSRMVGK-EREP 660

Query: 479 LMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF 538
            ++ Y++L+  L    R  DAI++  EM   G  P+  +F  L++     G        F
Sbjct: 661 NVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWPDAALLYF 720

Query: 539 SMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWK 585
             + +    PD  ++  LI +   ++SN N  P  A  E+LK+ + K
Sbjct: 721 REMGERET-PDTIVYVALITS---FISNKN--PTLAF-EILKEMVAK 760



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 67/150 (44%), Gaps = 23/150 (15%)

Query: 448 IDFYGISKKADAALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEE 505
           ID +   K  D AL+ F D   R  C  +      + Y++L+    K KR  +A ++L+E
Sbjct: 564 IDGFVKIKAVDQALEIFRDICARGYCPDV------VAYNTLINGFCKVKRVSEAHDILDE 617

Query: 506 MIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV--EPDAYMFKVLIQAYCKY 563
           M+  G+VP V T++ L+  +   GD  I Q    + R  G   EP+   +  LI   C  
Sbjct: 618 MVAKGLVPSVVTYNLLIDGWCKNGD--IDQAFHCLSRMVGKEREPNVITYTTLIDGLC-- 673

Query: 564 LSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
             N+   PD A        LW E R K  +
Sbjct: 674 --NAG-RPDDAIH------LWNEMRGKGCS 694



 Score = 42.0 bits (97), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 81/197 (41%), Gaps = 21/197 (10%)

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
           DI +  +    V +  L+  +     +       +E   +  + S  +YN+++  + K G
Sbjct: 582 DICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNG 641

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQ-- 244
              +A     +++ +   PN  TYT +I+ L N G+ D A+ +++    MR K  S    
Sbjct: 642 DIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNE---MRGKGCSPNRI 698

Query: 245 -YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGAN-----EF 298
            ++ L+ G       D A     EM  + + P   + VAL       FI   N     E 
Sbjct: 699 SFIALIHGLCKCGWPDAALLYFREM-GERETPDTIVYVAL----ITSFISNKNPTLAFEI 753

Query: 299 LREML-----PDKRIKN 310
           L+EM+     PD   KN
Sbjct: 754 LKEMVAKGKFPDPLDKN 770


>gi|356557763|ref|XP_003547180.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g14820, mitochondrial-like [Glycine max]
          Length = 492

 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 88/194 (45%), Gaps = 13/194 (6%)

Query: 375 LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
           LV  +L+ FK    A+ FFCW   +PG+ HD      M+ +L R    E +  ++ ++  
Sbjct: 98  LVVDMLQRFKHAXPAFRFFCWAGKRPGFDHDSRTYNCMMCVLGRTRQFETMVAMLEEMGE 157

Query: 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLML-LYSSLLRTLTKC 493
            G+ L   T  + I  +  + +   A   F   +       +FK+ + + + LL +L+  
Sbjct: 158 MGL-LTMETFSVAIKTFAEANQRKKAAGIFDLMKKY-----EFKVGVDVINFLLDSLSAA 211

Query: 494 KRDFDAINVLE-----EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548
           K   +A  V E     EMI  G  PD+   + +M    L+  +    KLF +++     P
Sbjct: 212 KLGKEAQAVFEKRVWNEMIDRGFKPDIVAHN-VMLEGLLKCKKSDAXKLFEIMKAKCPSP 270

Query: 549 DAYMFKVLIQAYCK 562
           +   + ++IQ +CK
Sbjct: 271 NVRSYTIMIQDFCK 284



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 1/116 (0%)

Query: 160 WNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219
           WNE   R       ++N+++    K  K+ +A + F  +  +   PN R+YT+MI+    
Sbjct: 226 WNEMIDRGFKPDIVAHNVMLEGLLKCKKS-DAXKLFEIMKAKCPSPNVRSYTIMIQDFCK 284

Query: 220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              +   +E    +     +  +  Y  L+ GF   ++ D   +LL EMR  G  P
Sbjct: 285 QKMMGEVVEYIDEMVDRECQPDAALYTCLITGFGXKKKMDMVYNLLKEMRKRGCSP 340



 Score = 39.3 bits (90), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 6/113 (5%)

Query: 446 LIIDFYGISKKADAALKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLE 504
            +I  +G  KK D       + R   C P         Y++L++  T  +   DA+ + +
Sbjct: 312 CLITGFGXKKKMDMVYNLLKEMRKRGCSPDGG-----TYNALIKLXTSQQMPDDAVRIYK 366

Query: 505 EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           +M  SGI P + T++ +M  + +  + +I   ++  + Q G  PD   + V I
Sbjct: 367 KMSQSGIKPTIHTYNMIMRSYFVTKNYEIGHAIWDXMHQKGCCPDDNSYSVYI 419


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 4/180 (2%)

Query: 96  PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLEL 155
           P+F    S +HAL    A  +    L+ ++    +   L  +  + NL+  YS++G  + 
Sbjct: 252 PDFVTYSSVVHALCKARAMDKAEAFLRQMV----NKGVLPNNWTYNNLIYGYSSTGQWKE 307

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
            +  + E R+++ L    ++N++M    K GK  EA + F  +  +G  P+  +Y +M+ 
Sbjct: 308 AVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLN 367

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                G L    ++F  +    I      + +L++ +      D+A  + NEMRD G  P
Sbjct: 368 GYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKP 427



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 97/506 (19%), Positives = 179/506 (35%), Gaps = 78/506 (15%)

Query: 67  LDPFIVTHALRS---APNADSALSIM----EALKSNPNFSHNQSTLHALATVLAKSQRNH 119
           +D  I  H L+    A   D AL I+      L   P+       L +L       Q + 
Sbjct: 144 VDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADD 203

Query: 120 ELKTLI--GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI 177
            L+ +   G + S       V +  ++  +   GD+      + E  QR       +Y+ 
Sbjct: 204 LLRMMAEGGAVCSPDV----VAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSS 259

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           V+    K     +A    RQ++++G +PN+ TY  +I    + G+   A+ VF  +    
Sbjct: 260 VVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQS 319

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGAN 296
           I      + +L+       +  EA+ + + M   G+ P   +  + L      G +    
Sbjct: 320 ILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMT 379

Query: 297 EFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEW 356
           +    ML                       D  + V   + V +K + +   L   +  +
Sbjct: 380 DLFDLML----------------------GDGIAPVICTFNVLIKAYANCGMLDKAMIIF 417

Query: 357 SPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTIL 416
           +      +      +TT  V   L      + A   F  +  Q G   D YA   ++   
Sbjct: 418 NEMRDHGVKPNVLTYTT--VIAALCRIGKMDDAMEKFNQMIDQ-GVAPDKYAYHCLIQGF 474

Query: 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK 476
             HG +     LI+++ ++GM L                                     
Sbjct: 475 CTHGSLLKAKELISEIMNNGMHLD------------------------------------ 498

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
              ++L+SS++  L K  R  DA N+ +  +  G+ P    +S LM  + L G  +   +
Sbjct: 499 ---IVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALR 555

Query: 537 LFSMVRQNGVEPDAYMFKVLIQAYCK 562
           +F  +   G+EP+  ++  L+  YCK
Sbjct: 556 VFDAMVSAGIEPNDVVYGTLVNGYCK 581



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 60/133 (45%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+Q + T G L       +E       L    ++ +++   K G+  +A   F   ++ G
Sbjct: 470 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVG 529

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P +  Y+++++    +GK++ AL VF A+    I+     Y  LV G+  + R DE  
Sbjct: 530 LHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGL 589

Query: 263 SLLNEMRDDGKFP 275
           SL  EM   G  P
Sbjct: 590 SLFREMLQKGIKP 602



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 6/179 (3%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+  Y   G ++  LS + E  Q+    ST  YNI++    + G+   A   F +
Sbjct: 570 VVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHE 629

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + + G   N  TY++++  L      D A+ +F  L  M +K        ++ G     R
Sbjct: 630 MTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRR 689

Query: 258 FDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREML-----PDKRIKN 310
            +EAK L   +   G  P      + +  + + G ++ A +    M      PD R+ N
Sbjct: 690 VEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLN 748



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 90/428 (21%), Positives = 167/428 (39%), Gaps = 41/428 (9%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE- 201
           LM   + +   EL L+ + +  +    +     N ++  + +  +  EA++       E 
Sbjct: 117 LMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPEL 176

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK--QYLILVEGFVGVERFD 259
           G +P+  +Y+++++ L + GK   A ++   +       +     Y  +++GF      +
Sbjct: 177 GCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVN 236

Query: 260 EAKSLLNEMRDDGKFPG----RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
           +A  L  EM   G  P      ++  AL + + M     A  FLR+M+    + N   Y 
Sbjct: 237 KACDLFKEMVQRGIPPDFVTYSSVVHALCKARAM---DKAEAFLRQMVNKGVLPNNWTY- 292

Query: 316 DGSDDDEDENDDNNSGVRIAYGVQ-LKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTR 374
                       NN    + YG      W   K       E   +  S+L D   V T  
Sbjct: 293 ------------NN----LIYGYSSTGQW---KEAVRVFKEMRRQ--SILPD---VVTFN 328

Query: 375 LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
           ++   L  +   + A   F  +A + G   DV++   ML   A  G +  +  L   +  
Sbjct: 329 MLMGSLCKYGKIKEARDVFDTMAMK-GQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLG 387

Query: 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCK 494
           DG+     T  ++I  Y      D A+  F++ R           +L Y++++  L +  
Sbjct: 388 DGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDH----GVKPNVLTYTTVIAALCRIG 443

Query: 495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK 554
           +  DA+    +MI  G+ PD   +  L+  F   G     ++L S +  NG+  D  +F 
Sbjct: 444 KMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFS 503

Query: 555 VLIQAYCK 562
            +I   CK
Sbjct: 504 SIINNLCK 511



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 47/98 (47%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           Y+++M  Y   GK  +A+  F  ++  G  PN   Y  ++     +G++D  L +F  + 
Sbjct: 537 YSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREML 596

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
              IK ++  Y I+++G     R   AK   +EM + G
Sbjct: 597 QKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESG 634



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 45/81 (55%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YSS++  L K +    A   L +M+  G++P+  T++ L+Y ++  G  K   ++F  +R
Sbjct: 257 YSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMR 316

Query: 543 QNGVEPDAYMFKVLIQAYCKY 563
           +  + PD   F +L+ + CKY
Sbjct: 317 RQSILPDVVTFNMLMGSLCKY 337



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 23/156 (14%)

Query: 452 GISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
           G S +AD  L+   +   +C P      ++ Y++++    K      A ++ +EM+  GI
Sbjct: 196 GKSGQADDLLRMMAEGGAVCSPD-----VVAYNTVIDGFFKEGDVNKACDLFKEMVQRGI 250

Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ---NGVEPDAYMFKVLIQAYC------- 561
            PD  T+S +++        + + K  + +RQ    GV P+ + +  LI  Y        
Sbjct: 251 PPDFVTYSSVVHALC---KARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKE 307

Query: 562 -----KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                K +   +++PD  T  +L  SL K G+ KEA
Sbjct: 308 AVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEA 343



 Score = 42.4 bits (98), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 81/207 (39%), Gaps = 19/207 (9%)

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALK 462
           T   YA+  ++    R    EL      +L   G+R+       ++  +  +K+ D AL 
Sbjct: 110 TSHTYAI--LMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALD 167

Query: 463 AFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV--PDVQTFSG 520
                    G +     +  YS LL++L    +   A ++L  M   G V  PDV  ++ 
Sbjct: 168 ILLHRTPELGCVPD---VFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNT 224

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSN 568
           ++  F  +GD      LF  + Q G+ PD   +  ++ A CK             + N  
Sbjct: 225 VIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKG 284

Query: 569 LMPDAATKELLKKSLWKEGRRKEAAAV 595
           ++P+  T   L       G+ KEA  V
Sbjct: 285 VLPNNWTYNNLIYGYSSTGQWKEAVRV 311



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 41/87 (47%)

Query: 479 LMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF 538
           ++  ++ L++    C     A+ +  EM   G+ P+V T++ ++      G      + F
Sbjct: 393 VICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKF 452

Query: 539 SMVRQNGVEPDAYMFKVLIQAYCKYLS 565
           + +   GV PD Y +  LIQ +C + S
Sbjct: 453 NQMIDQGVAPDKYAYHCLIQGFCTHGS 479


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 88/401 (21%), Positives = 150/401 (37%), Gaps = 44/401 (10%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           S+NI++  +    K   A+ TF ++   G  P   T+  ++  L    ++  AL++F  +
Sbjct: 17  SFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQM 76

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
                K     +  L+ G     R  EA +LL+ M +DG  P +      ++ M +MG  
Sbjct: 77  ----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDT 132

Query: 293 QGANEFLREMLPDKRIK-NVRYYE---DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKA 348
             A   LR+M     IK +V  Y    DG   D    D  N  +           +  K 
Sbjct: 133 VSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIE----------MQDKG 182

Query: 349 LANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYA 408
           +   +  +S  +    +  K+    RL+ ++L    SP                  DV  
Sbjct: 183 IFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISP------------------DVVT 224

Query: 409 LEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR 468
              ++  L + G +     L+ ++ S G+     T   ++D    S K   AL+ F   +
Sbjct: 225 FSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQ 284

Query: 469 TLCGPISKFKL-------MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL 521
                I            +  Y+ L+  L    +  +A  + EEM   GIVPD  T+S +
Sbjct: 285 KSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSM 344

Query: 522 MYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           +     Q       ++F  +      P+   F  LI  YCK
Sbjct: 345 INGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCK 385



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 1/132 (0%)

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           ++YNI++S     GK  EA E + ++   G +P++ TY+ MI  L    +LD A ++F +
Sbjct: 304 QTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDS 363

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER-MQEMGF 291
           +           +  L+ G+      D+   L  EM   G        + L R  +++G 
Sbjct: 364 MGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGN 423

Query: 292 IQGANEFLREML 303
           I G+ +  +EM+
Sbjct: 424 INGSLDIFQEMI 435



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 85/203 (41%), Gaps = 21/203 (10%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD--AALK 462
           +V     ++  L R G V     L+ ++  DG++    T   I+D  G+ K  D  +AL 
Sbjct: 80  NVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVD--GMCKMGDTVSALN 137

Query: 463 AFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL 521
                  L    S  K  +++YS+++  L K  R  DA N+  EM   GI PD+ T+S +
Sbjct: 138 LLRKMEEL----SHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCM 193

Query: 522 MYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNL 569
           +  F   G     Q+L   +    + PD   F  LI A  K             + +S +
Sbjct: 194 INGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGV 253

Query: 570 MPDAATKELLKKSLWKEGRRKEA 592
            P+  T   L   L   G+ K+A
Sbjct: 254 CPNVVTCNTLLDGLCDSGKLKDA 276



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 50/116 (43%)

Query: 160 WNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219
           + E   R  +  T +Y+ +++   K  +  EA + F  +  +   PN  T+  +I     
Sbjct: 326 YEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCK 385

Query: 220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            G +D  LE+F  +    I   +  Y+ L+ GF  V   + +  +  EM   G +P
Sbjct: 386 AGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYP 441


>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/259 (21%), Positives = 116/259 (44%), Gaps = 29/259 (11%)

Query: 372 TTRLVCKVLRHFKSPETAWHFFCWV----AYQPGYTHDVYALEKMLTILARHGHVELVDR 427
           ++ +V  V+R  + PE  + FF W     +++   TH++     ++ +LA+    +   +
Sbjct: 63  SSEIVNDVMREQRRPELGFRFFIWTTRRRSFRSWVTHNL-----VIDMLAKDDGFDTYWK 117

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFKLMLLYSSL 486
           ++ +L++  +++P  T  ++I  Y  S  A+ A+++F   +   C P      +  Y+S+
Sbjct: 118 ILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPD-----VFTYNSI 172

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           L  + + +    A+ V  +M+     P+  TF  L+      G      K+F  + Q G+
Sbjct: 173 LHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGI 232

Query: 547 EPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAA 594
            P+  ++ +++   C+             +  S   PD+ T   L     K G+  EA A
Sbjct: 233 PPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFA 292

Query: 595 VEERCEKINDVPSLALRGH 613
           + +  EK   V  L ++G+
Sbjct: 293 LLQLFEKEGYV--LGIKGY 309



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/233 (18%), Positives = 96/233 (41%), Gaps = 2/233 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+ + L      D AL + + + +      N      + + L +++R  ++  L+  +  
Sbjct: 206 ILLNGLCKNGKTDDALKMFDEM-TQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKV 264

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           S     S+    L+  +   G ++   +    + +   +L  + Y+ ++    +  +  E
Sbjct: 265 SGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDE 324

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
             E  R++   G  P+   YT++I     +G +D AL + + +    +   +  Y  L++
Sbjct: 325 VQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIK 384

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
           GF  V   D+A+SL  E+  +  FP      + +  M   G +  A +   +M
Sbjct: 385 GFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQM 437



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 61/136 (44%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           F  L+  Y+ SG  E  + ++ + +         +YN ++ V  +      A+  + Q++
Sbjct: 134 FSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQML 193

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
                PN  T+ +++  L   GK D AL++F  +    I   +  Y I++ G    +R D
Sbjct: 194 KLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTD 253

Query: 260 EAKSLLNEMRDDGKFP 275
           +   LLN M+  G  P
Sbjct: 254 DVHRLLNTMKVSGCCP 269



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 91/225 (40%), Gaps = 22/225 (9%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY---GISK 455
           Q G   +      +L+ L +    + V RL+  ++  G      T   ++D +   G   
Sbjct: 229 QKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQID 288

Query: 456 KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
           +A A L+ F  +  + G          YSSL+  L + KR  +      +M  +GI PDV
Sbjct: 289 EAFALLQLFEKEGYVLGIKG-------YSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDV 341

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------ 563
             ++ L+  F   G       + + + Q G+ PD Y +  LI+ +C              
Sbjct: 342 VLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLE 401

Query: 564 LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
           +S ++  P + T  +L   + + G   EA  +  + E +   PS+
Sbjct: 402 ISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSI 446



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 64/140 (45%), Gaps = 1/140 (0%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L++ +   G ++  L+  N+  QR     T  YN ++  +   G   +A     ++    
Sbjct: 347 LIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKND 406

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P S TYT++I  +   G LD A ++F+ +  +    +   +  L++G       +EA+
Sbjct: 407 CFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEAR 466

Query: 263 SLLNEMRDDGKFPGRAMRVA 282
            L  +M + GK P   +R++
Sbjct: 467 HLFYKM-EIGKNPSLFLRLS 485



 Score = 45.8 bits (107), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 88/232 (37%), Gaps = 19/232 (8%)

Query: 79  APNADSALSIMEALKSNPNFSHNQSTLHALAT----VLAKSQRNHELKTLIGDISSSKFL 134
           A  A  +   M+     P+     S LH +      +LA +  N  LK           L
Sbjct: 147 AEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLK-----------L 195

Query: 135 NVSVN---FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
           N + N   F+ L+     +G  +  L  ++E  Q+    +T  Y I++S   +  +  + 
Sbjct: 196 NYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDV 255

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
                 +   G  P+S T   +++    LG++D A  +             K Y  L++G
Sbjct: 256 HRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDG 315

Query: 252 FVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER-MQEMGFIQGANEFLREM 302
               +R+DE +    +M   G  P   +   L R   E+G +  A   L +M
Sbjct: 316 LFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDM 367



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 70/148 (47%), Gaps = 7/148 (4%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L++ +   G L+   S   E  +     ++ +Y I++    + G   EA + F Q+ + G
Sbjct: 382 LIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLG 441

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL-------MRIKRTSKQYLILVEGFVGV 255
             P+  T+  +I+ L   G+L+ A  +F  + +       +R+ + + + +    GF  V
Sbjct: 442 CSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTANGFHRV 501

Query: 256 ERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
           +R ++A  +L++M  +G  P  A+   L
Sbjct: 502 DREEDAFRVLDQMVKNGCTPSSAVYKCL 529


>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 15/131 (11%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +++Y++++ +L K K   DA +V  EMI  GI PDV T++ L++ F + G  K    L +
Sbjct: 198 VVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLN 257

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK---------------YLSNSNLMPDAATKELLKKSLW 584
            ++   + PD Y F VLI A  K                + + N++PD  T   L   L 
Sbjct: 258 EMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLC 317

Query: 585 KEGRRKEAAAV 595
           K    + A A+
Sbjct: 318 KNHHLERAIAL 328



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 64/148 (43%), Gaps = 1/148 (0%)

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           +S + E + +  +    +YN ++    K      A+   +++ + G  P+  +YT++++ 
Sbjct: 291 MSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDG 350

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
           L   G+L+ A E F  L +         Y +++ G      F EA  L ++M   G  P 
Sbjct: 351 LCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGKGCMPN 410

Query: 277 R-AMRVALERMQEMGFIQGANEFLREML 303
               R  +  + E      A + LREM+
Sbjct: 411 AITFRTIICALSEKDENDKAEKILREMI 438



 Score = 45.4 bits (106), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 9/97 (9%)

Query: 474 ISKFKLMLL---------YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
           ++ F LMLL         ++++L +L K KR    I++ ++   +GI PD+ T S L+  
Sbjct: 43  VASFNLMLLMRPPPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINC 102

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           F  Q    +   +F+ + + G  PDA     LI+  C
Sbjct: 103 FCHQAHITLAFSVFANILKRGFHPDAITLNTLIKGLC 139



 Score = 43.1 bits (100), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 61/147 (41%)

Query: 123 TLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVY 182
           ++  +I    F   ++    L++     G+++  L   ++   +   L   SY  +++  
Sbjct: 114 SVFANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGTLINGL 173

Query: 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
            K G+        R++      P+   Y  +I  L     L  A +V+S + +  I    
Sbjct: 174 CKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDV 233

Query: 243 KQYLILVEGFVGVERFDEAKSLLNEMR 269
             Y  L+ GF  + +  EA SLLNEM+
Sbjct: 234 VTYTTLIHGFCIMGKMKEAFSLLNEMK 260



 Score = 42.7 bits (99), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 3/141 (2%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V++  L+     +G+ + V     +    +       YN +++   K     +A + + +
Sbjct: 164 VSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSE 223

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE--GFVGV 255
           +I +G  P+  TYT +I     +GK+  A  + + + L  I      + +L++  G  G 
Sbjct: 224 MIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGK 283

Query: 256 ERF-DEAKSLLNEMRDDGKFP 275
           ++  DEA SL  EM+     P
Sbjct: 284 KKMVDEAMSLFEEMKHKNMIP 304



 Score = 39.7 bits (91), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 63/134 (47%), Gaps = 4/134 (2%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK---LDSALEVF 230
           +Y  ++  +   GK  EA     ++  +   P+  T++V+I+ L   GK   +D A+ +F
Sbjct: 235 TYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMSLF 294

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEM 289
             +    +      Y  L++G       + A +LL EM++ G  P   +  + L+ + + 
Sbjct: 295 EEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKG 354

Query: 290 GFIQGANEFLREML 303
           G ++ A EF + +L
Sbjct: 355 GRLEIAKEFFQHLL 368



 Score = 39.3 bits (90), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 40/80 (50%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+SL+  L K      AI +L+EM   GI PDV +++ L+      G  +I ++ F  + 
Sbjct: 309 YNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKGGRLEIAKEFFQHLL 368

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
             G   + + + V+I   CK
Sbjct: 369 VKGCHLNVWPYNVMINGLCK 388


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 85/187 (45%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
           N + N  T   L   L K  +  E K L+  ++        V++  LM  Y   G+++  
Sbjct: 215 NINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNA 274

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
              ++   Q+    +  SYNI++    K+ +  EA+   R+V+ +  +PN+ TY+ +I+ 
Sbjct: 275 KQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDG 334

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
              LG++ SAL++   +           Y  L++     +  D+A +L  +M++ G  P 
Sbjct: 335 FCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPN 394

Query: 277 RAMRVAL 283
           +    AL
Sbjct: 395 KYTYTAL 401



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/293 (19%), Positives = 122/293 (41%), Gaps = 15/293 (5%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH--------ALRSAPNADSALSIMEALK 93
           L+D++    +   + +L +++    + P +V++         +    NA      M    
Sbjct: 226 LMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKG 285

Query: 94  SNPN-FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD 152
            NPN +S+N      +   L KS+R  E   L+ ++     +  +V + +L+  +   G 
Sbjct: 286 VNPNVYSYN-----IMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGR 340

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
           +   L    E   R +     +Y  ++    K     +A   F ++ + G  PN  TYT 
Sbjct: 341 ITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTA 400

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +I+ L   G+  +A ++F  L +   +     Y +++ G       DEA ++ ++M ++G
Sbjct: 401 LIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENG 460

Query: 273 KFP-GRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDE 324
             P      + +  + E      A + L EM+    ++   ++ + S ++ D+
Sbjct: 461 CIPDAVTFEIIIRSLFEKDQNDKAEKLLHEMIAKDLLRFRDFHGERSPNENDK 513



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 91/444 (20%), Positives = 173/444 (38%), Gaps = 60/444 (13%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           +T + N +M      G+  +++    +V+ +G   +  +Y  ++  L  +G+  SAL++ 
Sbjct: 79  NTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLL 138

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG--------RAMRVA 282
             +     +     Y  +++G    +  +EA  L +EM   G FP             +A
Sbjct: 139 RMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLA 198

Query: 283 LERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKP 342
            + M+  G        L EM+      NV  Y    D    E     +   +A  V  K 
Sbjct: 199 GQLMEAFGL-------LNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLA--VMTKE 249

Query: 343 WLDPKALA-NTL-DEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQP 400
            + P  ++ NTL D +   ++  + +AK ++ T +                       Q 
Sbjct: 250 GVKPNVVSYNTLMDGYC--LIGEVQNAKQMFHTMV-----------------------QK 284

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   +VY+   M+  L +   V+    L+ ++    M     T   +ID +    +  +A
Sbjct: 285 GVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSA 344

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           L    +      P      ++ Y+SLL  L K +    A  +  +M   GI P+  T++ 
Sbjct: 345 LDLLKEMYHRGQPAD----VVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTA 400

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSN 568
           L+      G  K  QKLF  +   G   + + + V+I   CK             +  + 
Sbjct: 401 LIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENG 460

Query: 569 LMPDAATKELLKKSLWKEGRRKEA 592
            +PDA T E++ +SL+++ +  +A
Sbjct: 461 CIPDAVTFEIIIRSLFEKDQNDKA 484



 Score = 43.5 bits (101), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 83/457 (18%), Positives = 168/457 (36%), Gaps = 68/457 (14%)

Query: 123 TLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVY 182
           T++G I    +   ++    LM+     G+++  L   ++   +   +   SY  +++  
Sbjct: 66  TVLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGL 125

Query: 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
            K G+   A++  R + D    PN   Y  +I+ L     ++ A +++S +    I    
Sbjct: 126 CKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNV 185

Query: 243 KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLRE 301
             Y  L+ GF    +  EA  LLNEM      P      + ++ + + G ++ A   L  
Sbjct: 186 ITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAV 245

Query: 302 MLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVV 361
           M  +    NV  Y    D      +  N+  +  +   ++  ++P   +     ++  + 
Sbjct: 246 MTKEGVKPNVVSYNTLMDGYCLIGEVQNA--KQMFHTMVQKGVNPNVYS-----YNIMID 298

Query: 362 SLLADAKFVWTTRLVCKVLRHFKSPETAWH-----FFCWVA------------YQPGYTH 404
            L    +      L+ +VL     P T  +      FC +             Y  G   
Sbjct: 299 RLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPA 358

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           DV     +L  L ++ +++    L  K++  G++    T   +ID               
Sbjct: 359 DVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALID--------------- 403

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
                                    L K  R  +A  + + ++  G   +V T++ ++  
Sbjct: 404 ------------------------GLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISG 439

Query: 525 FALQG--DEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
              +G  DE +  K  S + +NG  PDA  F+++I++
Sbjct: 440 LCKEGMLDEALAMK--SKMEENGCIPDAVTFEIIIRS 474


>gi|242087579|ref|XP_002439622.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
 gi|241944907|gb|EES18052.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
          Length = 657

 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 88/210 (41%), Gaps = 3/210 (1%)

Query: 67  LDPF-IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           +D F +   +  +A    +A+ + E +K N  F     + + L   LA      E + + 
Sbjct: 264 MDAFKVAIKSFAAAGEIKNAVGVFELMKKN-GFDDGVESFNCLLVALANEGLGREARQVF 322

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
            D    ++     ++  LM  +  + +L      WNE  ++        +N ++    + 
Sbjct: 323 -DKMHGQYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMKPDVVVHNTMIEGLLRG 381

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
            +  EA++ F  +  +G  PN  TYT++I      GK+D A+E F  +   R +     Y
Sbjct: 382 QRRPEALKMFELMKAKGPPPNVWTYTMLIRDHCKRGKMDMAMECFEEMQEARCQPDVATY 441

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             L+ G+   +R D   ++L EM   G  P
Sbjct: 442 TCLLVGYGNAKRMDRVTAVLEEMTQKGCPP 471


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/216 (19%), Positives = 88/216 (40%), Gaps = 14/216 (6%)

Query: 69  PFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDI 128
           P +    L+   + D A +  +   + P F HN  T   L     K++R+ E   L+ + 
Sbjct: 43  PEVAGRVLQQVEDPDVAWTFFQWAGNKPGFQHNAYTCAVLLNAFVKAKRHEEAHRLLKEE 102

Query: 129 SSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN 188
                    + +  ++  +  +G ++      +E ++R   +    ++ ++    + G+ 
Sbjct: 103 LEPLCFPNEIMYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRI 162

Query: 189 FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK----- 243
            EA+E F+ + +E + PN  TY  ++  L    ++D ALE+F  +     KR        
Sbjct: 163 DEALEQFKSMGEECS-PNVITYNTVVNGLCKANRIDEALELFDDME----KRYEASHGCE 217

Query: 244 ----QYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                Y  +++     +R D+A      MR  G  P
Sbjct: 218 PDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAP 253



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/213 (20%), Positives = 88/213 (41%), Gaps = 7/213 (3%)

Query: 74  HALRSAPNADSALSIMEAL---KSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           HAL      + A    E L      PN       +H L     K+ R  E   ++ ++  
Sbjct: 298 HALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLC----KAGRVDEAYRILLEMVE 353

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           SK     + + +++  +  +G ++     +        +    ++  ++  +++  K+ E
Sbjct: 354 SKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSRE 413

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A      +++ G IP  +TY V+++ +     ++SALE++  +   + +     Y  L++
Sbjct: 414 AFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQ 473

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
                 R DEAK  L+ M  D   P  A+  AL
Sbjct: 474 CLCRARRVDEAKEFLDVMEADNVVPNGAICHAL 506



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/269 (20%), Positives = 99/269 (36%), Gaps = 46/269 (17%)

Query: 334 IAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFF 393
           IA G  L+P  D   +   + +  P +   LA      T  +  +VL+  + P+ AW FF
Sbjct: 5   IARGF-LRPTQDVAEILLGILKPGPYLCRDLAGYASTVTPEVAGRVLQQVEDPDVAWTFF 63

Query: 394 CWVAYQPGYTHDVYALEKMLTILA---RH------------------------------- 419
            W   +PG+ H+ Y    +L       RH                               
Sbjct: 64  QWAGNKPGFQHNAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGFCK 123

Query: 420 -GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFK 478
            G V+    L+ +++  G+++       +I       + D AL+ F      C P     
Sbjct: 124 AGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEECSPN---- 179

Query: 479 LMLLYSSLLRTLTKCKRDFDAINVLEEM-----IFSGIVPDVQTFSGLMYHFALQGDEKI 533
            ++ Y++++  L K  R  +A+ + ++M        G  PDV ++S ++           
Sbjct: 180 -VITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDK 238

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
             + F  +R  G  P+   +  LI   CK
Sbjct: 239 AYEYFKRMRAVGCAPNVVTYSSLIDGLCK 267



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 87/223 (39%), Gaps = 22/223 (9%)

Query: 77  RSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNV 136
           R    A   L +MEA     N   N +  HAL  VL K     E  +++ ++       +
Sbjct: 479 RRVDEAKEFLDVMEA----DNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPL 534

Query: 137 SVNFMNLMQ-------WYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF 189
              F  L++       W + S  L          R    +    +Y++ ++   K GK  
Sbjct: 535 GETFKILVEELYLRKKWEAASKLL----------RSPGFVADAATYSLCVAEICKAGKPD 584

Query: 190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV 249
           EAVE   Q++ +G  P+  TY  ++  L  L +++SA+  F  +           Y +L+
Sbjct: 585 EAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYTLLI 644

Query: 250 EGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGF 291
                 +  DEA  +   M   G  P  + MR     +++ G+
Sbjct: 645 GEACSADMADEAFRIFEAMVAAGFTPQAQTMRTLSSCLRDAGY 687



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/247 (21%), Positives = 99/247 (40%), Gaps = 8/247 (3%)

Query: 72  VTHALRSAPNADSALSI---MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDI 128
           V  AL  A   D A      M A+   PN      T  +L   L K  R  E   L+  +
Sbjct: 226 VIDALCKAQRVDKAYEYFKRMRAVGCAPNVV----TYSSLIDGLCKVDRPSECLELLLHM 281

Query: 129 SSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN 188
               F    ++F  ++     + + E     +    +  K  +  +YN+ +    K G+ 
Sbjct: 282 KEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRV 341

Query: 189 FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
            EA     ++++    P+  TY+ +I+     G++D A +VF+ + +         ++ L
Sbjct: 342 DEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTL 401

Query: 249 VEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKR 307
           + GF   ++  EA  +  +M + G  PG +   V ++ +     ++ A E   +M   KR
Sbjct: 402 LHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKR 461

Query: 308 IKNVRYY 314
             +   Y
Sbjct: 462 QPDCNTY 468



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 83/195 (42%), Gaps = 22/195 (11%)

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY---GISKKADAALKAFHDDRTLCG 472
           L + G V+   R++ ++    +     T   IID +   G   KAD           +  
Sbjct: 335 LCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPH 394

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
           P++       + +LL   ++ K+  +A  V E+M+ +G +P +QT++ LM         +
Sbjct: 395 PVT-------FMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVE 447

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLK 580
              +++  +++   +PD   +  LIQ  C+             +   N++P+ A    L 
Sbjct: 448 SALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALV 507

Query: 581 KSLWKEGRRKEAAAV 595
           + L K+G   EA +V
Sbjct: 508 EVLCKQGEVDEACSV 522



 Score = 42.0 bits (97), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 9/125 (7%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L++ L + +R  +A   L+ M    +VP+      L+     QG+      +   V 
Sbjct: 468 YAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVV 527

Query: 543 QNGVEPDAYMFKVLI---------QAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
           + G +P    FK+L+         +A  K L +   + DAAT  L    + K G+  EA 
Sbjct: 528 EVGCQPLGETFKILVEELYLRKKWEAASKLLRSPGFVADAATYSLCVAEICKAGKPDEAV 587

Query: 594 AVEER 598
            V E+
Sbjct: 588 EVIEQ 592


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 1/150 (0%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  +S SGD        +E +++       +YN+++      G+  +AV+   ++ + G
Sbjct: 410 LITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVG 469

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             PN  TY  +I+   + G + SA E+ + +   R +     Y + ++ F  + + DEA 
Sbjct: 470 LEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEAN 529

Query: 263 SLLNEMRDDGKFP-GRAMRVALERMQEMGF 291
            LLNEM D    P G       E M E G+
Sbjct: 530 DLLNEMLDKCLVPNGITYETIKEGMMEKGY 559



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 12/134 (8%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +++Y+ L+    +  +  DA+ V E M   GI P+V T++ L+  F+  GD +    L  
Sbjct: 369 VVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLD 428

Query: 540 MVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEG 587
            +++ G+E D   + VLI A C              +S   L P+  T   + +    +G
Sbjct: 429 EMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKG 488

Query: 588 RRKEAAAVEERCEK 601
             K A  +  R EK
Sbjct: 489 NIKSAYEIRTRMEK 502



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 71/189 (37%), Gaps = 35/189 (18%)

Query: 119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV 178
           + +  L+ ++  +     +V F  L+  Y  + +    +  + E +Q+    S  +YN +
Sbjct: 246 YHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSL 305

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRT----------------------------- 209
           +S     GK  E V+   ++ D G  PN  T                             
Sbjct: 306 ISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNV 365

Query: 210 ------YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
                 Y ++I+    LGK++ A+ V  A+    I      Y  L+ GF     +  A  
Sbjct: 366 EPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASG 425

Query: 264 LLNEMRDDG 272
           LL+EM++ G
Sbjct: 426 LLDEMKEKG 434



 Score = 43.1 bits (100), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 65/141 (46%), Gaps = 4/141 (2%)

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL 479
           G++  VD L+ ++   G+     T  ++I+ Y  +    AA++ F + +      S    
Sbjct: 243 GNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAAS---- 298

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y+SL+  L    +  + + ++EEM   G+ P+  TF  ++  F  +G          
Sbjct: 299 VVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWID 358

Query: 540 MVRQNGVEPDAYMFKVLIQAY 560
            + +  VEPD  ++ +LI  Y
Sbjct: 359 GMTERNVEPDVVIYNILIDVY 379



 Score = 39.7 bits (91), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 1/141 (0%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YNI++ VY + GK  +A+     +  +G  PN  TY  +I      G   SA  +   + 
Sbjct: 372 YNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMK 431

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQ 293
              I+     Y +L+          +A  LL+EM + G  P        ++   + G I+
Sbjct: 432 EKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIK 491

Query: 294 GANEFLREMLPDKRIKNVRYY 314
            A E    M   ++  NV  Y
Sbjct: 492 SAYEIRTRMEKCRKRANVVTY 512


>gi|356527777|ref|XP_003532484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Glycine max]
          Length = 583

 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 85/392 (21%), Positives = 143/392 (36%), Gaps = 76/392 (19%)

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           +M+     GK  EA   F  + +EG  P   TYT ++  L    +  S   + S +    
Sbjct: 28  LMNTLIGKGKPHEAQAVFNNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVADNG 87

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANE 297
           +K  S     ++  F    + DEA  +  +M++ G  P  +    L +    GF      
Sbjct: 88  MKPDSILLNAMINAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIK----GFGIAGRP 143

Query: 298 F----LREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTL 353
           +    L EM+             G D++   ND         Y + ++ W   K L    
Sbjct: 144 YESMKLLEMM-------------GQDENVKPNDR-------TYNILIQAWCTKKKL---- 179

Query: 354 DEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW---HFFCWVAYQPGYTHDVYALE 410
                                            E AW   H       QP    DV    
Sbjct: 180 ---------------------------------EEAWNVLHKMVASGIQP----DVVTYN 202

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470
            M    A++G  E  +RLI K+  + ++    T  +II  Y        AL+  +  + L
Sbjct: 203 TMARAYAQNGETERAERLILKMPYNIVKPNERTCGIIISGYCKEGNMPEALRFLYRMKEL 262

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
               +      L    L T      D +A+ ++EE    GI PDV TFS +M  ++  G 
Sbjct: 263 GVDPNPVVFNSLIKGYLDTTDTNGVD-EALTLMEEF---GIKPDVVTFSTIMNAWSSAGL 318

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            +  +++F+ + + G+EPD + + +L + Y +
Sbjct: 319 MENCEEIFNDMVKAGIEPDIHAYSILAKGYVR 350



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 27/183 (14%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D   L  M+   +  G V+   ++  K++  G +   ST   +I  +GI+ +   +
Sbjct: 87  GMKPDSILLNAMINAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIAGRPYES 146

Query: 461 LKAFH----------DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSG 510
           +K             +DRT             Y+ L++     K+  +A NVL +M+ SG
Sbjct: 147 MKLLEMMGQDENVKPNDRT-------------YNILIQAWCTKKKLEEAWNVLHKMVASG 193

Query: 511 IVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM 570
           I PDV T++ +   +A  G+ +  ++L   +  N V+P+     ++I  YCK       M
Sbjct: 194 IQPDVVTYNTMARAYAQNGETERAERLILKMPYNIVKPNERTCGIIISGYCK----EGNM 249

Query: 571 PDA 573
           P+A
Sbjct: 250 PEA 252



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 71/163 (43%), Gaps = 1/163 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F  +M  +S++G +E     +N+  +        +Y+I+   Y + G+  +A      
Sbjct: 304 VTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAEALLTS 363

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G  PN   +T +I      GK+D A  +   +  M      K Y  L+ G+   ++
Sbjct: 364 MSKYGVQPNVVIFTTIISGWCAAGKMDRAFRLCEKMHEMGTSPNLKTYETLIWGYGEAKQ 423

Query: 258 FDEAKSLLNEMRDDGKFPGRA-MRVALERMQEMGFIQGANEFL 299
             +A+ LL  M + G  P  + M++  +  + +G  + AN  L
Sbjct: 424 PWKAEELLTTMEERGVVPEMSTMQLVADAWRAIGLFKEANRIL 466



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 31/166 (18%), Positives = 72/166 (43%), Gaps = 1/166 (0%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T   L   L + +R   +  L+  ++ +     S+    ++  +S SG ++  +  + + 
Sbjct: 59  TYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMINAFSESGKVDEAMKIFQKM 118

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV-IDEGAIPNSRTYTVMIEHLVNLGK 222
           ++     +T +YN ++  +   G+ +E+++    +  DE   PN RTY ++I+      K
Sbjct: 119 KEYGCKPTTSTYNTLIKGFGIAGRPYESMKLLEMMGQDENVKPNDRTYNILIQAWCTKKK 178

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           L+ A  V   +    I+     Y  +   +      + A+ L+ +M
Sbjct: 179 LEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETERAERLILKM 224



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 5/144 (3%)

Query: 129 SSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN 188
           +S + ++     MN +       + + V +   E   +  L++   Y  +++   +  K 
Sbjct: 17  NSCQTVHARTKLMNTLIGKGKPHEAQAVFNNLTEEGHKPTLIT---YTTLVAALTRQ-KR 72

Query: 189 FEAVETF-RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
           F+++     +V D G  P+S     MI      GK+D A+++F  +     K T+  Y  
Sbjct: 73  FKSIPALLSKVADNGMKPDSILLNAMINAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNT 132

Query: 248 LVEGFVGVERFDEAKSLLNEMRDD 271
           L++GF    R  E+  LL  M  D
Sbjct: 133 LIKGFGIAGRPYESMKLLEMMGQD 156



 Score = 39.7 bits (91), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 54/104 (51%), Gaps = 7/104 (6%)

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           N +++ ++++GK  EA++ F+++ + G  P + TY  +I+     G      E    L +
Sbjct: 96  NAMINAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIK---GFGIAGRPYESMKLLEM 152

Query: 236 M----RIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           M     +K   + Y IL++ +   ++ +EA ++L++M   G  P
Sbjct: 153 MGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQP 196


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 82/169 (48%), Gaps = 1/169 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+  Y  +  ++  +  + E   +  + +T +YN ++  + ++GK   A E F++
Sbjct: 386 VTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQE 445

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++  G  P+  TY ++++ L + G+L+ ALE+F  +   R+      Y I++ G     +
Sbjct: 446 MVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASK 505

Query: 258 FDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPD 305
            D+A SL   + D G  P      V +  + + G +  A+   R+M  D
Sbjct: 506 VDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKED 554



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 83/201 (41%), Gaps = 18/201 (8%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G+  D      +L  L + G+  L   L  K+    ++       ++ID        D A
Sbjct: 205 GFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDA 264

Query: 461 LKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           L  F++       +   K  ++ YSSL+  L    +  D   +L EMI   I+PDV TFS
Sbjct: 265 LSLFNEME-----MKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFS 319

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--YLSNSNLM------- 570
            L+  F  +G     ++L++ +   G+ PD   +  LI  +CK   L  +N M       
Sbjct: 320 ALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSK 379

Query: 571 ---PDAATKELLKKSLWKEGR 588
              PD  T  +L  S  K  R
Sbjct: 380 GCEPDIVTYSILINSYCKAKR 400



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 78/411 (18%), Positives = 163/411 (39%), Gaps = 39/411 (9%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y  V++   K+G +  A++ FR++ +     +   Y+++I+ L   G  D AL +F+ +
Sbjct: 212 TYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM 271

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFI 292
            +  IK     Y  L+ G     ++D+   +L EM      P      AL +   + G +
Sbjct: 272 EMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKL 331

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
             A E   EM+      +   Y    D    EN  + +        Q+   +  K     
Sbjct: 332 LEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEAN-------QMFDLMVSKG---- 380

Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
                P++V+      +       CK     K  +     F  ++ + G   +      +
Sbjct: 381 ---CEPDIVT------YSILINSYCKA----KRVDDGMRLFREISSK-GLIPNTITYNTL 426

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
           +    + G +     L  ++ S G+     T  +++D    + + + AL+ F        
Sbjct: 427 VLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFE------- 479

Query: 473 PISKFKLML---LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
            + K ++ L   +Y+ ++  +    +  DA ++   +   G+ PDV T++ ++     +G
Sbjct: 480 KMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKG 539

Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLK 580
                  LF  ++++G  PD + + +LI+A   +L  S L+      E +K
Sbjct: 540 SLSEADMLFRKMKEDGCTPDDFTYNILIRA---HLGGSGLISSVELIEEMK 587



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 72/178 (40%), Gaps = 1/178 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V F  L+  +   G L      +NE   R     T +YN ++  + K     EA + F  
Sbjct: 316 VTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDL 375

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++ +G  P+  TY+++I       ++D  + +F  +    +   +  Y  LV GF    +
Sbjct: 376 MVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGK 435

Query: 258 FDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
            + AK L  EM   G  P      + L+ + + G +  A E   +M   +    +  Y
Sbjct: 436 LNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIY 493



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 88/223 (39%), Gaps = 6/223 (2%)

Query: 55  SNSLSSLLNDRLLDPFIVTHAL-----RSAPNADSALSIMEALKSNPNFSHNQSTLHALA 109
           +N +  L+  +  +P IVT+++       A   D  + +   + S+     N  T + L 
Sbjct: 369 ANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREI-SSKGLIPNTITYNTLV 427

Query: 110 TVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKL 169
               +S + +  K L  ++ S       V +  L+     +G+L   L  + + ++    
Sbjct: 428 LGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMT 487

Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           L    YNI++       K  +A   F  + D+G  P+  TY VMI  L   G L  A  +
Sbjct: 488 LGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADML 547

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           F  +           Y IL+   +G      +  L+ EM+  G
Sbjct: 548 FRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCG 590



 Score = 46.6 bits (109), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 75/187 (40%), Gaps = 4/187 (2%)

Query: 89  MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS 148
           M  +K  P+      T+  L   L    R  E   LI  +    F    V +  ++    
Sbjct: 166 MVEMKQRPDLV----TVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLC 221

Query: 149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSR 208
            SG+  L L  + +  +R    S   Y+IV+    K G   +A+  F ++  +G   +  
Sbjct: 222 KSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVV 281

Query: 209 TYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           TY+ +I  L N GK D   ++   +    I      +  L++ FV   +  EAK L NEM
Sbjct: 282 TYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEM 341

Query: 269 RDDGKFP 275
              G  P
Sbjct: 342 ITRGIAP 348



 Score = 43.5 bits (101), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 99/515 (19%), Positives = 199/515 (38%), Gaps = 101/515 (19%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWN---EYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE 193
           ++ F  L+  +   G +   ++  +   E +QR  L++  +   +++     G+  EA+ 
Sbjct: 140 TITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVST---LINGLCLKGRVSEALV 196

Query: 194 TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
              ++++ G  P+  TY  ++  L   G    AL++F  +    IK +  QY I+++   
Sbjct: 197 LIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLC 256

Query: 254 GVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIK-NVR 312
                            DG F       AL    EM           EM   K IK +V 
Sbjct: 257 ----------------KDGSFDD-----ALSLFNEM-----------EM---KGIKADVV 281

Query: 313 YYED--GSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFV 370
            Y    G   ++ + DD    +R   G  + P  D    +  +D +  E        K +
Sbjct: 282 TYSSLIGGLCNDGKWDDGAKMLREMIGRNIIP--DVVTFSALIDVFVKE-------GKLL 332

Query: 371 WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIA 430
               L  +++    +P+T       + Y      D +  E  L     H   ++ D +++
Sbjct: 333 EAKELYNEMITRGIAPDT-------ITYNS--LIDGFCKENCL-----HEANQMFDLMVS 378

Query: 431 KLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM---LLYSSLL 487
           K    G      T  ++I+ Y  +K+ D  ++ F +       IS   L+   + Y++L+
Sbjct: 379 K----GCEPDIVTYSILINSYCKAKRVDDGMRLFRE-------ISSKGLIPNTITYNTLV 427

Query: 488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE 547
               +  +   A  + +EM+  G+ P V T+  L+      G+     ++F  ++++ + 
Sbjct: 428 LGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMT 487

Query: 548 PDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
               ++ ++I   C              LS+  + PD  T  ++   L K+G   EA  +
Sbjct: 488 LGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADML 547

Query: 596 -----EERCEKINDVPSLALRGHIWA---VSSADL 622
                E+ C   +   ++ +R H+     +SS +L
Sbjct: 548 FRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVEL 582



 Score = 42.0 bits (97), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 12/124 (9%)

Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           DAI++ E MI S  +P    F+ L    A      +V      +  NG+E D Y   ++I
Sbjct: 53  DAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMI 112

Query: 558 QAYC---KYLSNSNLM---------PDAATKELLKKSLWKEGRRKEAAAVEERCEKINDV 605
             YC   K L   +++         PD  T   L      EGR  EA A+ +R  ++   
Sbjct: 113 NCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQR 172

Query: 606 PSLA 609
           P L 
Sbjct: 173 PDLV 176


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 64/138 (46%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+    ++G LE  L   ++ ++   L +  +Y+I++  +AK+G    A ET+ +
Sbjct: 350 VAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNR 409

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +I  G  PN  TYT M++ L      D A  +   + L      +  +   ++G  G  R
Sbjct: 410 MISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGR 469

Query: 258 FDEAKSLLNEMRDDGKFP 275
            + A  LL  M+  G  P
Sbjct: 470 VEWAMKLLERMQGHGCLP 487



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 8/189 (4%)

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           V K L+  ++  +   FF  +A    + H       M+  L R   +++V  ++ +++ D
Sbjct: 44  VLKRLKTDRNLSSVLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYILQQMKMD 103

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCK 494
           G+         II+ Y     A+ ALK F+      C P  +     +Y+ LL  L   +
Sbjct: 104 GINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVR-----IYNHLLDALLS-E 157

Query: 495 RDFDAINVL-EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
             F  IN L   M   G++P+V T++ L+             KLF  +   G  PDA  +
Sbjct: 158 NKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTY 217

Query: 554 KVLIQAYCK 562
             ++ + CK
Sbjct: 218 TTMVSSLCK 226



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 99/503 (19%), Positives = 191/503 (37%), Gaps = 49/503 (9%)

Query: 65  RLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTL 124
           +LL    V   L++  N  S L    A+ ++  F H  ST   +   L +      ++ +
Sbjct: 37  QLLQESDVLKRLKTDRNLSSVLGFFSAIANSNAFQHTASTYRVMIERLGRECEMDMVQYI 96

Query: 125 IGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK 184
           +  +           F+ ++  Y   G  E  L  +    +     +   YN ++     
Sbjct: 97  LQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLS 156

Query: 185 TGKNFEAVET-FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
             K F+ +   +  +  +G IPN  TY ++++ L    ++D+A ++F  +        + 
Sbjct: 157 ENK-FQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAV 215

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKF-PGRAMRVAL-ERMQEMGFIQGANEFLRE 301
            Y  +V       + D+A+ L       G+F P   +  AL + M + G I+ A + L E
Sbjct: 216 TYTTMVSSLCKAGKIDDARELA------GRFKPSVPVYNALIDGMCKEGRIEVAIKLLGE 269

Query: 302 MLPDKRIKNVRYYEDGSDDDEDENDDNNSG-VRIAYGVQLKPWLDPKALANTLDEWSPEV 360
           M+ +    NV  Y          N    SG V +A+ +  + +L  +     +  ++P +
Sbjct: 270 MMDNGVDPNVVSYSC------IINSLCVSGNVELAFALFAQMFL--RGCDANIHTFTPLI 321

Query: 361 VSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHG 420
                  K      L              W        Q G   +V A   ++  L  +G
Sbjct: 322 KGCFMRGKLYEALDL--------------WKLM----IQDGCEPNVVAYNTLIHGLCSNG 363

Query: 421 HVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL---CGPISKF 477
            +E   ++  +++  G     +T  ++ID  G +K  D    +   +R +   C P    
Sbjct: 364 SLEEALQVCDQMQRSGCLPNVTTYSILID--GFAKSGDLVGASETWNRMISHGCRPN--- 418

Query: 478 KLMLLYSSLLRTLTKCKRDFDAINVL-EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
             ++ Y+ ++  L K    FD  N L E+M   G  P+  TF+  +      G  +   K
Sbjct: 419 --VVTYTCMVDVLCK-NSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMK 475

Query: 537 LFSMVRQNGVEPDAYMFKVLIQA 559
           L   ++ +G  P+   +  L+ A
Sbjct: 476 LLERMQGHGCLPNITTYNELLDA 498



 Score = 45.4 bits (106), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 52/253 (20%), Positives = 102/253 (40%), Gaps = 25/253 (9%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           +++H  R  PN  +   +++ L  N  F    S +  + T+   +       T I  +  
Sbjct: 410 MISHGCR--PNVVTYTCMVDVLCKNSMFDQANSLVEKM-TLEGCTPNTITFNTFIKGLCG 466

Query: 131 SKFLNVSVNFMNLMQWY------STSGDLELVLSTWNEYRQRAKLL----------STES 174
           +  +  ++  +  MQ +      +T  +L   L   N+Y +   L           +  +
Sbjct: 467 NGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVT 526

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YN V+  +++ G   EA++ F + +  G  P+S TY  MI      GK+  A ++   + 
Sbjct: 527 YNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVS 586

Query: 235 LMRIKRTS-KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA-----MRVALERMQE 288
            M+        Y  L+ G       +EA + L++  + G  P  A     +R   + +  
Sbjct: 587 SMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCFFDSLGH 646

Query: 289 MGFIQGANEFLRE 301
           MG I   ++ LR+
Sbjct: 647 MGPIHILDDILRK 659



 Score = 44.3 bits (103), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 90/223 (40%), Gaps = 22/223 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   +V +   ++  L   G+VEL   L A++   G      T   +I    +  K   A
Sbjct: 274 GVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEA 333

Query: 461 L---KAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
           L   K    D   C P      ++ Y++L+  L       +A+ V ++M  SG +P+V T
Sbjct: 334 LDLWKLMIQDG--CEPN-----VVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTT 386

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLS 565
           +S L+  FA  GD     + ++ +  +G  P+   +  ++   CK             ++
Sbjct: 387 YSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMT 446

Query: 566 NSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
                P+  T     K L   GR + A  + ER +    +P++
Sbjct: 447 LEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNI 489



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 46/222 (20%), Positives = 95/222 (42%), Gaps = 25/222 (11%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   +V+    +L  L ++  V+   +L  ++ + G      T   ++     + K D  
Sbjct: 174 GLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKID-- 231

Query: 461 LKAFHDDRTLCGPISKFKLML-LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
                D R L G   +FK  + +Y++L+  + K  R   AI +L EM+ +G+ P+V ++S
Sbjct: 232 -----DARELAG---RFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYS 283

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC-------------KYLSN 566
            ++    + G+ ++   LF+ +   G + + + F  LI+  C             K +  
Sbjct: 284 CIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKG-CFMRGKLYEALDLWKLMIQ 342

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
               P+      L   L   G  +EA  V ++ ++   +P++
Sbjct: 343 DGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNV 384



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 40/80 (50%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ LL  L +  +  +A  + +E+    + P++ T++ ++Y F+  G      +LF    
Sbjct: 492 YNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKAL 551

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
             G  PD+  +  +I AYCK
Sbjct: 552 VRGTAPDSITYNTMIHAYCK 571


>gi|357144696|ref|XP_003573383.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Brachypodium distachyon]
          Length = 606

 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 89/207 (42%), Gaps = 5/207 (2%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPN--FSHNQSTLHALATVLAKSQRNHELKTLIGDI 128
           I+  +L        A +I E L S     F  +Q   H +  +  KS    + + L   +
Sbjct: 216 IILKSLVEGDKYKEAEAIFEDLLSEKRTFFKPDQKMFHMMIYMYKKSGDYAQARKLFAQM 275

Query: 129 SSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN 188
           S       +V F +LM   S  GD + V S +++ ++        SY++++  Y K  + 
Sbjct: 276 SERGIPQSTVTFNSLM---SFEGDYKEVSSIYDQMQRAGLKPDVVSYSLLIKAYGKARRE 332

Query: 189 FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
            EA   F +++D G  P  ++Y ++++     G ++ A  VF  +   R++     Y  +
Sbjct: 333 EEASAVFEEMLDAGIRPTRKSYNILLDAFAISGLVEEAQTVFKTMRRHRVEPDLCSYTTM 392

Query: 249 VEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +  +V     D A+     +++DG  P
Sbjct: 393 LLAYVNASDMDGAEKFFRRIKEDGLRP 419



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 86/198 (43%), Gaps = 16/198 (8%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           ++T   + G     +R++  +   G R    +   +++ YG +K+   A   FH  +T  
Sbjct: 147 LVTAYGKLGDFSRAERVLKYMNKKGYRPTVISQTALMEAYGRAKQYRKAEAVFHRMQT-S 205

Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSG---IVPDVQTFSGLMYHFALQ 528
           GP       + Y  +L++L +  +  +A  + E+++        PD + F  ++Y +   
Sbjct: 206 GPEPS---PITYQIILKSLVEGDKYKEAEAIFEDLLSEKRTFFKPDQKMFHMMIYMYKKS 262

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY---------LSNSNLMPDAATKELL 579
           GD    +KLF+ + + G+      F  L+     Y         +  + L PD  +  LL
Sbjct: 263 GDYAQARKLFAQMSERGIPQSTVTFNSLMSFEGDYKEVSSIYDQMQRAGLKPDVVSYSLL 322

Query: 580 KKSLWKEGRRKEAAAVEE 597
            K+  K  R +EA+AV E
Sbjct: 323 IKAYGKARREEEASAVFE 340



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 73/149 (48%), Gaps = 7/149 (4%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           M+ +  + G      +L A++   G+     T   ++ F G  K+    + + +D     
Sbjct: 255 MIYMYKKSGDYAQARKLFAQMSERGIPQSTVTFNSLMSFEGDYKE----VSSIYDQMQRA 310

Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
           G       ++ YS L++   K +R+ +A  V EEM+ +GI P  ++++ L+  FA+ G  
Sbjct: 311 GLKPD---VVSYSLLIKAYGKARREEEASAVFEEMLDAGIRPTRKSYNILLDAFAISGLV 367

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
           +  Q +F  +R++ VEPD   +  ++ AY
Sbjct: 368 EEAQTVFKTMRRHRVEPDLCSYTTMLLAY 396



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 14/169 (8%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           + GY   V +   ++    R       + +  ++++ G      T ++I+       K  
Sbjct: 169 KKGYRPTVISQTALMEAYGRAKQYRKAEAVFHRMQTSGPEPSPITYQIILKSLVEGDKYK 228

Query: 459 AALKAFHD----DRTLCGPISKFKLMLLYSSLLRTLTKCKRDF-DAINVLEEMIFSGIVP 513
            A   F D     RT   P  K   M++Y      + K   D+  A  +  +M   GI  
Sbjct: 229 EAEAIFEDLLSEKRTFFKPDQKMFHMMIY------MYKKSGDYAQARKLFAQMSERGIPQ 282

Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
              TF+ LM   + +GD K V  ++  +++ G++PD   + +LI+AY K
Sbjct: 283 STVTFNSLM---SFEGDYKEVSSIYDQMQRAGLKPDVVSYSLLIKAYGK 328


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 80/382 (20%), Positives = 157/382 (41%), Gaps = 47/382 (12%)

Query: 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
           + T+ +M+ HL + GK   ALE+   +P    +  +  Y  ++ GF    R   A  ++ 
Sbjct: 114 TTTFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMR 169

Query: 267 EMRD-DGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIK--NVRYYE-DGSDDD 321
           EMR+  G  P +      +    ++G +  A +   EML    +K   V Y    G   D
Sbjct: 170 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 229

Query: 322 EDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLR 381
           + + D           +  +  +  + +A T+  ++  V +L  D +      LV ++  
Sbjct: 230 QGKLDT---------ALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGG 280

Query: 382 HFKSPET------------------AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVE 423
              +P+                   A   F  ++ + G    V     ++  L++ G V+
Sbjct: 281 KGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRR-GVRATVVTYTALIYALSKKGQVQ 339

Query: 424 LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM--- 480
             D+L  +    G+R        +I+ +  S   D A +       + G + K ++    
Sbjct: 340 ETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFE-------IMGEMEKKRIAPDD 392

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           + Y++L+R L    R  +A  +++EM   GI PD+ T++ L+  ++++GD K   ++ + 
Sbjct: 393 VTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNE 452

Query: 541 VRQNGVEPDAYMFKVLIQAYCK 562
           +   G  P    +  LIQ  CK
Sbjct: 453 MMNKGFNPTLLTYNALIQGLCK 474



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 92/227 (40%), Gaps = 3/227 (1%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHE-LKTLIGDISSSKFLNVSVNFMN 142
           +AL IM  ++     + NQ T   + +   K  R  E +K     ++  +    +V +  
Sbjct: 163 AALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNA 222

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  Y   G L+  L   +   +R   ++  +YN+++      G+  EA E   ++  +G
Sbjct: 223 LIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKG 282

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  TY ++I      G +  ALE+F  +    ++ T   Y  L+       +  E  
Sbjct: 283 LAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETD 342

Query: 263 SLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRI 308
            L +E    G  P   +  AL       G I  A E + EM   KRI
Sbjct: 343 KLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEM-EKKRI 388



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 70/173 (40%)

Query: 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
           +T + L   L    R  E   L+ ++           +  L+  +   G+++  L  +  
Sbjct: 253 ATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFEN 312

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
             +R    +  +Y  ++   +K G+  E  + F + +  G  P+   Y  +I      G 
Sbjct: 313 MSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGN 372

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +D A E+   +   RI      Y  L+ G   + R DEA+ L++EM + G  P
Sbjct: 373 IDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQP 425



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 3/153 (1%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           L +  I +H+  ++ N D A  IM  ++     + +  T + L   L    R  E + LI
Sbjct: 359 LYNALINSHS--TSGNIDRAFEIMGEMEKK-RIAPDDVTYNTLMRGLCLLGRVDEARKLI 415

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
            +++        V +  L+  YS  GD++  L   NE   +    +  +YN ++    K 
Sbjct: 416 DEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKN 475

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
           G+  +A    +++++ G  P+  TY  +IE L 
Sbjct: 476 GQGDDAENMVKEMVENGITPDDSTYISLIEGLT 508



 Score = 46.2 bits (108), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 88/201 (43%), Gaps = 17/201 (8%)

Query: 77  RSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNV 136
           +S  +AD ALS +  L   P+     S+L  L    + + R H   T +   S  K L++
Sbjct: 25  KSVLSADKALSPLAVL---PHLDGAPSSLPNLLLTASAAVRPH--ATSLRLYSRMKSLSL 79

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
            ++  +L    S            + +R R  L +T ++NI++      GK   A+E  R
Sbjct: 80  PISTASLHPLLSALPSAPAFALFADMFRLRLPLCTT-TFNIMLRHLCSAGKPARALELLR 138

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR----IKRTSKQYLILVEGF 252
           Q+      PN+ TY  +I    + G++ +AL++      MR    I      Y  ++ G+
Sbjct: 139 QM----PRPNAVTYNTVIAGFCSRGRVQAALDIMRE---MRERGGIAPNQYTYGTVISGW 191

Query: 253 VGVERFDEAKSLLNEMRDDGK 273
             V R DEA  + +EM   G+
Sbjct: 192 CKVGRVDEAVKVFDEMLTKGE 212



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 83/203 (40%), Gaps = 1/203 (0%)

Query: 81  NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNF 140
           N   AL I E + S         T  AL   L+K  +  E   L  +          V +
Sbjct: 302 NVKKALEIFENM-SRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLY 360

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
             L+  +STSG+++       E  ++       +YN +M      G+  EA +   ++ +
Sbjct: 361 NALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTE 420

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
            G  P+  TY  +I      G +  AL + + +       T   Y  L++G     + D+
Sbjct: 421 RGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDD 480

Query: 261 AKSLLNEMRDDGKFPGRAMRVAL 283
           A++++ EM ++G  P  +  ++L
Sbjct: 481 AENMVKEMVENGITPDDSTYISL 503



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 12/106 (11%)

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A+ + E M   G+   V T++ L+Y  + +G  +   KLF    + G+ PD  ++  LI 
Sbjct: 306 ALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALIN 365

Query: 559 AYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           ++               +    + PD  T   L + L   GR  EA
Sbjct: 366 SHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEA 411



 Score = 38.9 bits (89), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 27/130 (20%), Positives = 56/130 (43%)

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           ++G++   +     V +  LM+     G ++      +E  +R       +YN ++S Y+
Sbjct: 379 IMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYS 438

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
             G   +A+    +++++G  P   TY  +I+ L   G+ D A  +   +    I     
Sbjct: 439 MKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDS 498

Query: 244 QYLILVEGFV 253
            Y+ L+EG  
Sbjct: 499 TYISLIEGLT 508


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/259 (21%), Positives = 116/259 (44%), Gaps = 29/259 (11%)

Query: 372 TTRLVCKVLRHFKSPETAWHFFCWV----AYQPGYTHDVYALEKMLTILARHGHVELVDR 427
           ++ +V  V+R  + PE  + FF W     +++   TH++     ++ +LA+    +   +
Sbjct: 63  SSEIVNDVMREQRRPELGFRFFIWTTRRRSFRSWVTHNL-----VIDMLAKDDGFDTYWK 117

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFKLMLLYSSL 486
           ++ +L++  +++P  T  ++I  Y  S  A+ A+++F   +   C P      +  Y+S+
Sbjct: 118 ILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPD-----VFTYNSI 172

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
           L  + + +    A+ V  +M+     P+  TF  L+      G      K+F  + Q G+
Sbjct: 173 LHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGI 232

Query: 547 EPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAA 594
            P+  ++ +++   C+             +  S   PD+ T   L     K G+  EA A
Sbjct: 233 PPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFA 292

Query: 595 VEERCEKINDVPSLALRGH 613
           + +  EK   V  L ++G+
Sbjct: 293 LLQLFEKEGYV--LGIKGY 309



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 87/455 (19%), Positives = 180/455 (39%), Gaps = 48/455 (10%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           F  L+  Y+ SG  E  + ++ + +         +YN ++ V  +      A+  + Q++
Sbjct: 134 FSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQML 193

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
                PN  T+ +++  L   GK D AL++F  +    I   +  Y I++ G    +R D
Sbjct: 194 KLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTD 253

Query: 260 EAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGS 318
           +   LLN M+  G  P        L+   ++G I  A   L+    +  +  ++ Y    
Sbjct: 254 DVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLI 313

Query: 319 DD--DEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFV-WTTRL 375
           D        D+     R  +    K  ++P  +  T+      ++    +   V +   +
Sbjct: 314 DGLFRAKRYDEVQEWCRKMF----KAGIEPDVVLYTI------LIRGFCEVGMVDYALNM 363

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYT-----------------HDVYALEKMLTIL-- 416
           +  + +   SP+T    +C+ A   G+                  +D +      TIL  
Sbjct: 364 LNDMTQRGLSPDT----YCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILIC 419

Query: 417 --ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGP- 473
              R+G ++   ++  ++ + G      T   +ID    + + + A   F+       P 
Sbjct: 420 GMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPS 479

Query: 474 ----ISKFKLMLLYSSLLRTLTK--CKRD--FDAINVLEEMIFSGIVPDVQTFSGLMYHF 525
               +S+    ++ ++ L+T+ +  C+      A  +L ++  SG+VPD+ T++ L+  F
Sbjct: 480 LFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGF 539

Query: 526 ALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
               +     KLF  ++  G  PD+  +  LI  +
Sbjct: 540 CKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGF 574



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/233 (18%), Positives = 96/233 (41%), Gaps = 2/233 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+ + L      D AL + + + +      N      + + L +++R  ++  L+  +  
Sbjct: 206 ILLNGLCKNGKTDDALKMFDEM-TQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKV 264

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           S     S+    L+  +   G ++   +    + +   +L  + Y+ ++    +  +  E
Sbjct: 265 SGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDE 324

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
             E  R++   G  P+   YT++I     +G +D AL + + +    +   +  Y  L++
Sbjct: 325 VQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIK 384

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
           GF  V   D+A+SL  E+  +  FP      + +  M   G +  A +   +M
Sbjct: 385 GFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQM 437



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 91/225 (40%), Gaps = 22/225 (9%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY---GISK 455
           Q G   +      +L+ L +    + V RL+  ++  G      T   ++D +   G   
Sbjct: 229 QKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQID 288

Query: 456 KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
           +A A L+ F  +  + G          YSSL+  L + KR  +      +M  +GI PDV
Sbjct: 289 EAFALLQLFEKEGYVLGIKG-------YSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDV 341

Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------ 563
             ++ L+  F   G       + + + Q G+ PD Y +  LI+ +C              
Sbjct: 342 VLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLE 401

Query: 564 LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
           +S ++  P + T  +L   + + G   EA  +  + E +   PS+
Sbjct: 402 ISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSI 446



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 57/116 (49%)

Query: 168 KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227
           +++ T S   ++    ++G   +A +   Q+ D G +P+  TY V+I        ++ A 
Sbjct: 490 RVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAF 549

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
           ++F  L L      S  Y  L++GF  V+R ++A  +L++M  +G  P  A+   L
Sbjct: 550 KLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCL 605


>gi|414865591|tpg|DAA44148.1| TPA: hypothetical protein ZEAMMB73_616668 [Zea mays]
          Length = 838

 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 1/171 (0%)

Query: 133 FLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV 192
           FL   V +   M      GD+E  L  + +   +  L    ++NI+++ + K GK  EA 
Sbjct: 573 FLPDIVTYSAAMNGMCKVGDIENALGLFLDISSKCYLPDVVAHNILINGFRKAGKFDEAQ 632

Query: 193 ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
           E   +++ +G +P+  TY +MI+     G +D A+     +       T   Y  L++G 
Sbjct: 633 EIMEEMLSKGMLPSVVTYNLMIDIWCKSGSIDKAITCVYKMIDEEKPPTVVTYTSLLDGL 692

Query: 253 VGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREM 302
               R DEA  L  +MR+ G  P G A    +  + + G ++ A  +  EM
Sbjct: 693 CNAGRPDEAIVLWCKMREKGCSPNGIAYTALVNGLCKCGRMETAVNYYEEM 743



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 111/542 (20%), Positives = 207/542 (38%), Gaps = 82/542 (15%)

Query: 76  LRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRN-------HELKTLIGDI 128
           L +A   D+A  + +A K+  + + N  T + L   LAK+ R         E+    GD 
Sbjct: 145 LGAAGLPDTAARVFDAAKTTLSCAPNSYTYNCLLDALAKAGRAEDAEARLQEMVVTCGDE 204

Query: 129 SSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN 188
           S  ++        +L+Q Y  +G  E   +      +RA  +      +++  Y+K GK 
Sbjct: 205 SVDRY-----TLTSLLQCYCNAGRPEDASAVLQRMSKRA-WVDEHVLTMLIVAYSKWGKV 258

Query: 189 FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
            +AVE   ++      PN +T +V++  L   G++D A+ +F  +           Y +L
Sbjct: 259 EDAVELLGRMEALDMRPNEKTLSVLVHGLARQGRVDVAMNMFGKMASYGFSVDLAMYSVL 318

Query: 249 VEGFVGVERFDEAKSLLNEMRDD-------------------GKF--------------- 274
           +EG        +A  L  +M+ D                   G F               
Sbjct: 319 IEGLCHGNEMGKAVKLFEDMKRDRITPDVRLLKKIIEAFCRQGDFSTVGPFINENAVHLK 378

Query: 275 PGRAM---RVALERMQEMGFIQGANEFLREML-PDKRIKNVRYYEDGSDDD--------- 321
           PG A+    V L+ +   G ++ A + L  M+  D+R+         SDDD         
Sbjct: 379 PGSAVLLYNVILDGLINHGEVEAAYQLLSSMVRGDQRV---------SDDDTVGVHIFVI 429

Query: 322 -EDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVL 380
            ED   +++S   +  G+     LD  ALA T D     +V L    K +    L+ ++ 
Sbjct: 430 TEDVKPNSDSFNIVVCGLCKVKKLD-LALALTKD-----MVGLGCKGKLLMFNDLILELC 483

Query: 381 RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP 440
              K  E A+  F  +    G     +    +L  + R         L+ ++R++  +  
Sbjct: 484 NSGKLDE-AYEIFNQMK-DLGLKPSEFTYNSLLYGICRRKDTSAAADLLREMRANAHKPW 541

Query: 441 FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAI 500
                 ++    +S +   AL+ F D     G +     ++ YS+ +  + K     +A+
Sbjct: 542 IKNCTDMVQQLCLSGRITEALQ-FLDGMLELGFLPD---IVTYSAAMNGMCKVGDIENAL 597

Query: 501 NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
            +  ++     +PDV   + L+  F   G     Q++   +   G+ P    + ++I  +
Sbjct: 598 GLFLDISSKCYLPDVVAHNILINGFRKAGKFDEAQEIMEEMLSKGMLPSVVTYNLMIDIW 657

Query: 561 CK 562
           CK
Sbjct: 658 CK 659



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 65/146 (44%)

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
           DISS  +L   V    L+  +  +G  +       E   +  L S  +YN+++ ++ K+G
Sbjct: 602 DISSKCYLPDVVAHNILINGFRKAGKFDEAQEIMEEMLSKGMLPSVVTYNLMIDIWCKSG 661

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
              +A+    ++IDE   P   TYT +++ L N G+ D A+ ++  +           Y 
Sbjct: 662 SIDKAITCVYKMIDEEKPPTVVTYTSLLDGLCNAGRPDEAIVLWCKMREKGCSPNGIAYT 721

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDG 272
            LV G     R + A +   EM+  G
Sbjct: 722 ALVNGLCKCGRMETAVNYYEEMKTKG 747



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 91/227 (40%), Gaps = 25/227 (11%)

Query: 379 VLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR 438
           V+    S   A  FF W A QPG+ H  Y+L  M ++L  H    L DRL          
Sbjct: 74  VILRLPSWRHALDFFRWAAEQPGFRHSCYSLNAMASLLPPHQRAHL-DRLATDALVSRCS 132

Query: 439 LPFSTIRLIIDFYGISKKADAALKAFHDDRTL--CGPISKFKLMLLYSSLLRTLTKCKRD 496
           +    +  ++   G +   D A + F   +T   C P S       Y+ LL  L K  R 
Sbjct: 133 MTPGALGFLLRRLGAAGLPDTAARVFDAAKTTLSCAPNS-----YTYNCLLDALAKAGRA 187

Query: 497 FDAINVLEEMIFSGIVPDVQ--TFSGLMYHFALQG-DEKIVQKLFSMVRQNGVEPDAYMF 553
            DA   L+EM+ +     V   T + L+  +   G  E     L  M ++  V  D ++ 
Sbjct: 188 EDAEARLQEMVVTCGDESVDRYTLTSLLQCYCNAGRPEDASAVLQRMSKRAWV--DEHVL 245

Query: 554 KVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGR 588
            +LI AY K+            +   ++ P+  T  +L   L ++GR
Sbjct: 246 TMLIVAYSKWGKVEDAVELLGRMEALDMRPNEKTLSVLVHGLARQGR 292


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 106/559 (18%), Positives = 208/559 (37%), Gaps = 66/559 (11%)

Query: 69  PFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDI 128
           P  VT  ++   +   AL +  +++    F H  ST  ++   L    +   ++ ++ D+
Sbjct: 7   PKHVTAVIKCQKDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDM 66

Query: 129 SSSKFLNVSVN-----FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE----SYNIVM 179
                 NV  +     ++  M+ Y   G ++  ++ +    +R      E    SYN +M
Sbjct: 67  RE----NVGNHMLEGVYVGAMKNYGRKGKVQEAVNVF----ERMDFYDCEPTVFSYNAIM 118

Query: 180 SVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIK 239
           SV   +G   +A + + ++ D G  P+  ++T+ ++      +  +AL + + +     +
Sbjct: 119 SVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCE 178

Query: 240 RTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQGANEF 298
                Y  +V GF       E   L  +M   G           L  + + G ++   + 
Sbjct: 179 MNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKL 238

Query: 299 LREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKA-LANTLDEWS 357
           L +++    + N+  Y                      G+  +  LD    +   L E  
Sbjct: 239 LDKVIKRGVLPNLFTYN-----------------LFIQGLCQRGELDGAVRMVGCLIEQG 281

Query: 358 PEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILA 417
           P+          +    L+  + ++ K  E   +    V    G   D Y    ++    
Sbjct: 282 PK-------PDVITYNNLIYGLCKNSKFQEAEVYLGKMV--NEGLEPDSYTYNTLIAGYC 332

Query: 418 RHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKF 477
           + G V+L +R++     +G      T R +ID      + + AL  F++   L   I   
Sbjct: 333 KGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNE--ALGKGIKPN 390

Query: 478 KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL 537
             ++LY++L++ L+      +A  +  EM   G++P+VQTF+ L+      G       L
Sbjct: 391 --VILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGL 448

Query: 538 FSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM------------PDAATKELLKKSLWK 585
             ++   G  PD + F +LI  Y   L   N +            PD  T   L   L K
Sbjct: 449 VKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCK 508

Query: 586 EGRRKEA-----AAVEERC 599
             + ++        VE+ C
Sbjct: 509 TSKFEDVMETYKTMVEKGC 527



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 72/167 (43%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T + L   L K     +   L+  + S  +      F  L+  YST   +E  L   +  
Sbjct: 428 TFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVM 487

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
                     +YN +++   KT K  + +ET++ ++++G  PN  T+ +++E L    KL
Sbjct: 488 LDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKL 547

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
           D AL +   +    +   +  +  L++GF      D A +L  +M +
Sbjct: 548 DEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEE 594



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 81/197 (41%), Gaps = 12/197 (6%)

Query: 109 ATVLAKSQRNHEL--KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR 166
             +L  +Q  +E+  K LI ++ +    N+ VN +  M   S +  L  V+ +      +
Sbjct: 405 GMILEAAQLANEMSEKGLIPEVQT---FNILVNGLCKMGCVSDADGLVKVMIS------K 455

Query: 167 AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
                  ++NI++  Y+   K   A+E    ++D G  P+  TY  ++  L    K +  
Sbjct: 456 GYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDV 515

Query: 227 LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALER 285
           +E +  +           + IL+E      + DEA  LL EM++    P        ++ 
Sbjct: 516 METYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDG 575

Query: 286 MQEMGFIQGANEFLREM 302
             + G + GA    R+M
Sbjct: 576 FCKNGDLDGAYTLFRKM 592



 Score = 40.4 bits (93), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 74/166 (44%), Gaps = 5/166 (3%)

Query: 64  DRLLDPFIVTHA--LRSAPNADSALSIMEALKS--NPNFSHNQSTLHALATVLAKSQRNH 119
           D  +DP + T+   L           +ME  K+      + N  T + L   L + ++  
Sbjct: 489 DNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLD 548

Query: 120 ELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS-TESYNIV 178
           E   L+ ++ +      +V F  L+  +  +GDL+   + + +  +  K+ S T +YNI+
Sbjct: 549 EALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNII 608

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
           +  + +      A + F++++D    P+  TY +M++     G ++
Sbjct: 609 IHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVN 654


>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
 gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
          Length = 353

 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 80/380 (21%), Positives = 142/380 (37%), Gaps = 106/380 (27%)

Query: 258 FDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
           + +A  LL+EMRD G  P      V +  + + G +  A EFL         KN+  Y  
Sbjct: 8   YKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFL---------KNLPSY-- 56

Query: 317 GSDDDEDENDDNNSGVRIAYGVQLKP------WLDPKALANTLDE--WSPEVVSLLADAK 368
           G + +            ++Y + LK       W D + L   + +    P VV+      
Sbjct: 57  GCEPN-----------TVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLIS 105

Query: 369 FVWTTRLVCKVL-------RHFKSPETA-----WHFFCW------------VAYQPGYTH 404
           F+    LV   L       ++  +P +       H FC             +    G   
Sbjct: 106 FLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYP 165

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           D+ +   +LT L R G V++   L+ +L+  G                            
Sbjct: 166 DIVSYNTLLTALCRSGEVDVAVELLHQLKDKG---------------------------- 197

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
                 C P+     ++ Y++++  LTK  +  +A+ +L EM+  G+ PD+ T+S +   
Sbjct: 198 ------CAPV-----LISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAG 246

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPD 572
              +   +   + F  V+  G+ P+  ++  +I   CK            Y+  +  MP+
Sbjct: 247 LCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPN 306

Query: 573 AATKELLKKSLWKEGRRKEA 592
            +T  +L + L  EG  KEA
Sbjct: 307 ESTYTILIEGLAYEGLIKEA 326



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/224 (20%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 83  DSALSIMEALK---SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
           + AL ++E +      PN       LHA      K ++  +    +  + S       V+
Sbjct: 114 EPALEVLEQIPKYGCTPNSLSYNPLLHAFC----KQKKMDKAMAFLDLMVSRGCYPDIVS 169

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  L+     SG++++ +   ++ + +       SYN V+    K GK  EA+E   +++
Sbjct: 170 YNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMV 229

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
            +G  P+  TY+ +   L    +++ A+  F  +  M I+  +  Y  ++ G        
Sbjct: 230 SKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETH 289

Query: 260 EAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
            A  L   M  +G  P  +   + +E +   G I+ A + L E+
Sbjct: 290 SAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDEL 333



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 47/86 (54%)

Query: 190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV 249
           +A++   ++ D+G  P+  TY V++  +   G++D A+E    LP    +  +  Y I++
Sbjct: 10  QAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVL 69

Query: 250 EGFVGVERFDEAKSLLNEMRDDGKFP 275
           +G    ER+++A+ L+ EM   G  P
Sbjct: 70  KGLCTAERWEDAEELMGEMGQKGCPP 95



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 50/105 (47%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           +T SYNIV+       +  +A E   ++  +G  PN  T+ ++I  L   G ++ ALEV 
Sbjct: 61  NTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVL 120

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             +P       S  Y  L+  F   ++ D+A + L+ M   G +P
Sbjct: 121 EQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYP 165



 Score = 45.4 bits (106), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 40/199 (20%), Positives = 82/199 (41%), Gaps = 1/199 (0%)

Query: 74  HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKF 133
           HA       D A++ ++ + S   +  +  + + L T L +S        L+  +     
Sbjct: 140 HAFCKQKKMDKAMAFLDLMVSRGCYP-DIVSYNTLLTALCRSGEVDVAVELLHQLKDKGC 198

Query: 134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE 193
             V +++  ++   + +G  +  L   NE   +       +Y+ + +   +  +  +A+ 
Sbjct: 199 APVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIR 258

Query: 194 TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
            F +V D G  PN+  Y  +I  L    +  SA+++F+ +           Y IL+EG  
Sbjct: 259 AFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLA 318

Query: 254 GVERFDEAKSLLNEMRDDG 272
                 EA+ LL+E+   G
Sbjct: 319 YEGLIKEARDLLDELCSRG 337


>gi|225465635|ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial [Vitis vinifera]
 gi|296085293|emb|CBI29025.3| unnamed protein product [Vitis vinifera]
          Length = 854

 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 84/196 (42%), Gaps = 1/196 (0%)

Query: 108 LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA 167
           L   L K +R+ E    + ++    FL   V +   +  +     ++  L  + +   R 
Sbjct: 568 LVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARG 627

Query: 168 KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227
                 +YN +++ + K  +  EA +   +++ +G +P+  TY ++I+     G +D A 
Sbjct: 628 YCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAF 687

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERM 286
              S +     +     Y  L++G     R D+A  L NEMR  G  P R   +AL   +
Sbjct: 688 HCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGL 747

Query: 287 QEMGFIQGANEFLREM 302
            + G+   A  + REM
Sbjct: 748 CKCGWPDAALLYFREM 763



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 164/407 (40%), Gaps = 55/407 (13%)

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
           NFE  + F  ++ E   P++ +++++I+ L N GKLD AL +F  +  +  K+    Y  
Sbjct: 440 NFEVNKFF--MVKEMVRPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNN 497

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDG----KFPGRAMRVALERMQEMGFIQGANEFLREML 303
           L++      R +E   LL EM+  G    +F   ++   L R ++   + GA + +REM 
Sbjct: 498 LIDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRRED---VTGALDMVREMR 554

Query: 304 PDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDE-----WSP 358
                  +++Y                        QL          N L E     + P
Sbjct: 555 VHGHEPWIKHY-------------------TLLVKQLCKRKRSAEACNFLAEMVREGFLP 595

Query: 359 EVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILAR 418
           ++V+  A        + V + L  F+         C   Y P    DV A   ++    +
Sbjct: 596 DIVAYSAAIDGFVKIKAVDQALEIFRD-------ICARGYCP----DVVAYNTLINGFCK 644

Query: 419 HGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFK 478
              V     ++ ++ + G+     T  L+ID  G  K  D   +AFH    + G   +  
Sbjct: 645 VKRVSEAHDILDEMVAKGLVPSVVTYNLLID--GWCKNGDID-QAFHCLSRMVGK-EREP 700

Query: 479 LMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF 538
            ++ Y++L+  L    R  DAI++  EM   G  P+  +F  L++     G        F
Sbjct: 701 NVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWPDAALLYF 760

Query: 539 SMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWK 585
             + +    PD  ++  LI +   ++SN N  P  A  E+LK+ + K
Sbjct: 761 REMGERET-PDTIVYVALITS---FISNKN--PTLAF-EILKEMVAK 800



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 91/223 (40%), Gaps = 37/223 (16%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSK----------FLNV---------- 136
            F+HN  T +A+A+ L+ +++N  L  L  DI +S+          F+            
Sbjct: 123 GFNHNCYTYNAMASCLSHARQNAPLSLLSMDIVNSRCAMSPGALGFFIRCLGSTGLVEEA 182

Query: 137 ----------------SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS 180
                           S +F  L++  S SG ++LV     E           +   V+ 
Sbjct: 183 NLLFDQVKMMRLCVPNSYSFNCLLEAISKSGSIDLVEMRLKEMCDSGWEPDKYTLTSVLQ 242

Query: 181 VYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR 240
            Y  + K  +A+  F ++   G + +    ++++      G++D A E+   +  + I+ 
Sbjct: 243 AYCNSRKFDKALSVFNEIYGRGWV-DGHVLSILVLTFSKCGEVDKAFELIERMEDLGIRL 301

Query: 241 TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
             K + +L+ GFV   R D+A  L  +M+  G  P  ++  AL
Sbjct: 302 NEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDAL 344



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 5/155 (3%)

Query: 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD 466
           Y+   +L  +++ G ++LV+  + ++   G      T+  ++  Y  S+K D AL  F++
Sbjct: 200 YSFNCLLEAISKSGSIDLVEMRLKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNE 259

Query: 467 DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
                G +    L    S L+ T +KC     A  ++E M   GI  + +TF  L++ F 
Sbjct: 260 IYGR-GWVDGHVL----SILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFV 314

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
            Q       +LF  ++++G  PD  ++  LI   C
Sbjct: 315 RQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLC 349



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 67/150 (44%), Gaps = 23/150 (15%)

Query: 448 IDFYGISKKADAALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEE 505
           ID +   K  D AL+ F D   R  C  +      + Y++L+    K KR  +A ++L+E
Sbjct: 604 IDGFVKIKAVDQALEIFRDICARGYCPDV------VAYNTLINGFCKVKRVSEAHDILDE 657

Query: 506 MIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV--EPDAYMFKVLIQAYCKY 563
           M+  G+VP V T++ L+  +   GD  I Q    + R  G   EP+   +  LI   C  
Sbjct: 658 MVAKGLVPSVVTYNLLIDGWCKNGD--IDQAFHCLSRMVGKEREPNVITYTTLIDGLC-- 713

Query: 564 LSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
             N+   PD A        LW E R K  +
Sbjct: 714 --NAG-RPDDAIH------LWNEMRGKGCS 734



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 81/197 (41%), Gaps = 21/197 (10%)

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
           DI +  +    V +  L+  +     +       +E   +  + S  +YN+++  + K G
Sbjct: 622 DICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNG 681

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQ-- 244
              +A     +++ +   PN  TYT +I+ L N G+ D A+ +++    MR K  S    
Sbjct: 682 DIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNE---MRGKGCSPNRI 738

Query: 245 -YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGAN-----EF 298
            ++ L+ G       D A     EM  + + P   + VAL       FI   N     E 
Sbjct: 739 SFIALIHGLCKCGWPDAALLYFREM-GERETPDTIVYVAL----ITSFISNKNPTLAFEI 793

Query: 299 LREML-----PDKRIKN 310
           L+EM+     PD   KN
Sbjct: 794 LKEMVAKGKFPDPLDKN 810


>gi|302785562|ref|XP_002974552.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
 gi|300157447|gb|EFJ24072.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
          Length = 495

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 110/293 (37%), Gaps = 51/293 (17%)

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           V  VL + KSP+ A   F W A Q  + H V+     L  L + GH     ++   +   
Sbjct: 7   VIHVLENIKSPKLASRVFKWAARQEDFQHTVFTYNAYLNALVKGGHGSKARKIFDDMLYK 66

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLR------- 488
                  T  +++       K DAAL+   D  +     + F + +L S L +       
Sbjct: 67  ECLPNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAA 126

Query: 489 ---------------------TLTKCKRD-FD-AINVLEEMIFSGIVPDVQTFSGLMYHF 525
                                T   CK D  D A+ V  EM  + +VP + T++GL+Y +
Sbjct: 127 YELYKRLSDECSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGY 186

Query: 526 ALQGDEK----IVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNL 569
              G  +    +++++    + + V PD Y +  +I  +CK             +  S  
Sbjct: 187 CRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGC 246

Query: 570 MPDAATKELLKKSLWKEGRRKEAAA-----VEERCEKINDVPSLALRGHIWAV 617
            P+  T   L   L   G+  EA A     VE  CE      ++ + GH  A+
Sbjct: 247 SPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARAL 299



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 114/274 (41%), Gaps = 12/274 (4%)

Query: 51  RSNSSNSLSSLLNDRLLDP--FIV---THALRSAPNADSALSIMEALKSNPNFSHNQSTL 105
           +++++  L   +  ++L P  FIV      L      D+A  + + L      S ++ + 
Sbjct: 87  KTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRLSDE--CSLDRISY 144

Query: 106 HALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQ 165
           + L   L K+ +      + G++  +  +   + +  L+  Y  +G +E  ++   E  +
Sbjct: 145 NMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIE 204

Query: 166 RAK----LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG 221
             K    +    SYN V+S + K  +   A    R++I  G  PN  T+  +++ L   G
Sbjct: 205 GKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTG 264

Query: 222 KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRV 281
           KLD A  +F  +     + T+  Y +L+ G     R D+A     +M   G  P      
Sbjct: 265 KLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYT 324

Query: 282 AL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
           AL   + +   ++ A E L+ M    R  NV  Y
Sbjct: 325 ALIGGLCDANKVEDALEILKRMSSTGREPNVVTY 358



 Score = 43.1 bits (100), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 40/202 (19%), Positives = 83/202 (41%), Gaps = 1/202 (0%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           V H L +  +   A  + +      +F H   T +A    L K     + + +  D+   
Sbjct: 7   VIHVLENIKSPKLASRVFKWAARQEDFQHTVFTYNAYLNALVKGGHGSKARKIFDDMLYK 66

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
           + L     +  +++        +  L    +   +    +T   N+++S   K GK   A
Sbjct: 67  ECLPNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAA 126

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
            E ++++ DE ++ +  +Y ++   L    ++D AL VF  +    +  +   Y  L+ G
Sbjct: 127 YELYKRLSDECSL-DRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYG 185

Query: 252 FVGVERFDEAKSLLNEMRDDGK 273
           +    R ++A +LL EM +  K
Sbjct: 186 YCRAGRMEQAMTLLEEMIEGKK 207


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 102/466 (21%), Positives = 185/466 (39%), Gaps = 41/466 (8%)

Query: 126 GDISSSKFLNVS----------VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
           GD+ +S+ L V           V + +L+  Y   G LE V S +NE +    +    +Y
Sbjct: 244 GDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITY 303

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           N +++ Y K  K   A E F ++ + G  PN  TY+ +I+     G +  A+++   +  
Sbjct: 304 NGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRR 363

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQG 294
             +      Y  L++         EA  LLN+M   G K         L+ + + G +  
Sbjct: 364 TGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIE 423

Query: 295 ANEFLREMLPDKRIKNVRYY-------------EDGSDDDEDENDDNNSGVRIAYGVQLK 341
           A E  R ML D    N + Y             ED     +   + N     I YG  + 
Sbjct: 424 AEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIW 483

Query: 342 PWLDPKALANT---LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAY 398
                + L  T   L+E     +S    A  V +T ++    +  KS + A +FF  +  
Sbjct: 484 GHCSQRKLEETKLILEEMKSRGIS----ANPVISTTIIDAYFKAGKSSD-ALNFFQEMQ- 537

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
             G    +     ++  L   G VEL      ++ S G++   +    +ID    +   +
Sbjct: 538 DVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIE 597

Query: 459 AALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
           +A K F +   R +   I+ F      ++L+    K     +A+ ++  M    I  D+ 
Sbjct: 598 SAKKLFDEMQCRGMTPDITAF------TALIDGNLKHGNLQEALVLISRMTELAIEFDLH 651

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            ++ L+  F+  G+    +K F+ + + G+ P+  +   L++ Y K
Sbjct: 652 VYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYK 697



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 72/178 (40%)

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
           N     N  T   L     K         L+ D+  +  L     + +L+     +G+L 
Sbjct: 328 NNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLT 387

Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
                 N+  Q    L+  +Y  ++    K G+  EA E FR ++ +G  PN + YT ++
Sbjct: 388 EAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALV 447

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
              +   +++ A+++   +    IK     Y  ++ G     + +E K +L EM+  G
Sbjct: 448 HGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRG 505



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 18/208 (8%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G    V+    M+  L + G +E   RL  ++R  G+     T   +ID YG     +  
Sbjct: 225 GIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEV 284

Query: 461 LKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
              F++ + + C P      ++ Y+ L+    K ++   A     EM  +G+ P+V T+S
Sbjct: 285 ASLFNEMKDVGCVPD-----IITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYS 339

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNS 567
            L+  F  +G  +   KL   +R+ G+ P+ + +  LI A CK             +  +
Sbjct: 340 TLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQA 399

Query: 568 NLMPDAATKELLKKSLWKEGRRKEAAAV 595
            +  +  T   L   L K GR  EA  V
Sbjct: 400 GVKLNIVTYTALLDGLCKAGRMIEAEEV 427



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 58/125 (46%)

Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
           G LE     ++  R    L    S N ++   +K+G      + F  +I  G  P+  TY
Sbjct: 174 GLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTY 233

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
            VMI++L   G L+++  +F  +  M +      Y  L++G+  V   +E  SL NEM+D
Sbjct: 234 NVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKD 293

Query: 271 DGKFP 275
            G  P
Sbjct: 294 VGCVP 298



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 73/194 (37%), Gaps = 4/194 (2%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           A+   S M   ++ P        LH L+    KS     ++    D+  +        + 
Sbjct: 179 ANECFSRMRNFRTLPKARSCNFLLHRLS----KSGNGQLVRKFFNDMIGAGIAPSVFTYN 234

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            ++ +    GDLE     + + R+        +YN ++  Y K G   E    F ++ D 
Sbjct: 235 VMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDV 294

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G +P+  TY  +I       K+  A E FS +    +K     Y  L++ F        A
Sbjct: 295 GCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGA 354

Query: 262 KSLLNEMRDDGKFP 275
             LL +MR  G  P
Sbjct: 355 IKLLXDMRRTGLLP 368



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 90/222 (40%), Gaps = 7/222 (3%)

Query: 61  LLNDRL-----LDPFIVTHALRSAPNADSALSIMEALKS--NPNFSHNQSTLHALATVLA 113
           LLND L     L+    T  L     A   +   E  +S      S NQ    AL     
Sbjct: 392 LLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYI 451

Query: 114 KSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE 173
           K++R  +   ++  ++        + + +++  + +   LE       E + R    +  
Sbjct: 452 KAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPV 511

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
               ++  Y K GK+ +A+  F+++ D G      TY V+I+ L   G ++ A++ F  +
Sbjct: 512 ISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRM 571

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             + ++     Y  L++G       + AK L +EM+  G  P
Sbjct: 572 LSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTP 613



 Score = 46.2 bits (108), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 103/250 (41%), Gaps = 42/250 (16%)

Query: 343 WLDPKALANTL--DEWSPEVVSLLADAKF--VWTTRLVCKVLRHFKSPETAWHFFCWVAY 398
           +LD  +L   +  D W+   + +L D+    +W ++++   L   + P+ A  FF W   
Sbjct: 40  YLDIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVSKIL---LGLREDPKLALKFFKWAGS 96

Query: 399 QPGYTH--DVYALEKMLTILAR---HGHVELVDRLIAKLRSDGMRLP------------- 440
           Q G+ H  + Y +   L   AR     H + V  +I   R D M  P             
Sbjct: 97  QVGFRHTTESYCIIVHLVFRARMYTDAH-DTVKEVIMNSRMD-MGFPVCNIFDMLWSTRN 154

Query: 441 --------FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK 492
                   F  +  +    G+ ++A+       + RTL  P ++       + LL  L+K
Sbjct: 155 ICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTL--PKAR-----SCNFLLHRLSK 207

Query: 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYM 552
                       +MI +GI P V T++ ++ +   +GD +  ++LF  +R+ G+ PD   
Sbjct: 208 SGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVT 267

Query: 553 FKVLIQAYCK 562
           +  LI  Y K
Sbjct: 268 YNSLIDGYGK 277



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 87/412 (21%), Positives = 162/412 (39%), Gaps = 49/412 (11%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           +TESY I++ +  +     +A +T ++VI      NSR              +D    V 
Sbjct: 103 TTESYCIIVHLVFRARMYTDAHDTVKEVI-----MNSR--------------MDMGFPVC 143

Query: 231 SALPLMRIKRT-----SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALE 284
           +   ++   R      S  + +L   FV +   +EA    + MR+    P  R+    L 
Sbjct: 144 NIFDMLWSTRNICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLH 203

Query: 285 RMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPW- 343
           R+ + G  Q   +F  +M+      +V  Y    D    E D  NS  R  + VQ++   
Sbjct: 204 RLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENS--RRLF-VQMREMG 260

Query: 344 LDPKALA--NTLDEWSP-----EVVSLLADAKFVW------TTRLVCKVLRHFKSPETAW 390
           L P  +   + +D +       EV SL  + K V       T   +      F+    A+
Sbjct: 261 LSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAF 320

Query: 391 HFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF 450
            +F  +    G   +V     ++    + G ++   +L+  +R  G+     T   +ID 
Sbjct: 321 EYFSEMK-NNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDA 379

Query: 451 YGISKKADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFS 509
              +     A K  +D        +  KL ++ Y++LL  L K  R  +A  V   M+  
Sbjct: 380 NCKAGNLTEAWKLLNDMLQ-----AGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKD 434

Query: 510 GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           GI P+ Q ++ L++ +      +   K+   + +  ++PD  ++  +I  +C
Sbjct: 435 GISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHC 486


>gi|15238810|ref|NP_197340.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635760|sp|Q94JX6.2|PP391_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g18390, mitochondrial; Flags: Precursor
 gi|332005166|gb|AED92549.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 459

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 99/229 (43%), Gaps = 16/229 (6%)

Query: 372 TTRLVCKVLRHF-KSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIA 430
           T+  V +VLR   +S   +  FF W    P YT      E++   LA H   E + +++ 
Sbjct: 76  TSEFVFRVLRATSRSSNDSLRFFNWARSNPSYTPTSMEYEELAKSLASHKKYESMWKILK 135

Query: 431 KLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTL 490
           +++   + +   T+  II+ YG +   D A++ F+      G         +Y+SLL  L
Sbjct: 136 QMKDLSLDISGETLCFIIEQYGKNGHVDQAVELFNGVPKTLGCQQTVD---VYNSLLHAL 192

Query: 491 TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA 550
              K    A  ++  MI  G+ PD +T++ L+  +   G  K  Q+    + + G  P A
Sbjct: 193 CDVKMFHGAYALIRRMIRKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSRRGFNPPA 252

Query: 551 YMFKVLIQAY--CKYLSNSNLM----------PDAATKELLKKSLWKEG 587
               +LI+      YL ++  M          PD  T  +L +++ K G
Sbjct: 253 RGRDLLIEGLLNAGYLESAKEMVSKMTKGGFVPDIQTFNILIEAISKSG 301



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 10/164 (6%)

Query: 158 STWNEYRQRAKL---LSTESYNIVMSVYAKTGKNFEAVETFRQVIDE-GAIPNSRTYTVM 213
           S W   +Q   L   +S E+   ++  Y K G   +AVE F  V    G       Y  +
Sbjct: 129 SMWKILKQMKDLSLDISGETLCFIIEQYGKNGHVDQAVELFNGVPKTLGCQQTVDVYNSL 188

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG- 272
           +  L ++     A  +   +    +K   + Y ILV G+    +  EA+  L+EM   G 
Sbjct: 189 LHALCDVKMFHGAYALIRRMIRKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSRRGF 248

Query: 273 KFPGRAMRVALERMQEMGFIQGANEFLREM-----LPDKRIKNV 311
             P R   + +E +   G+++ A E + +M     +PD +  N+
Sbjct: 249 NPPARGRDLLIEGLLNAGYLESAKEMVSKMTKGGFVPDIQTFNI 292



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 45/231 (19%), Positives = 95/231 (41%), Gaps = 20/231 (8%)

Query: 81  NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNH-------ELKTLIGDISSSKF 133
           +++ +L      +SNP+++        LA  LA  ++         ++K L  DIS    
Sbjct: 90  SSNDSLRFFNWARSNPSYTPTSMEYEELAKSLASHKKYESMWKILKQMKDLSLDISGETL 149

Query: 134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST-ESYNIVMSVYAKTGKNFEAV 192
             +       ++ Y  +G ++  +  +N   +      T + YN ++           A 
Sbjct: 150 CFI-------IEQYGKNGHVDQAVELFNGVPKTLGCQQTVDVYNSLLHALCDVKMFHGAY 202

Query: 193 ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
              R++I +G  P+ RTY +++    + GK+  A E    +        ++   +L+EG 
Sbjct: 203 ALIRRMIRKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSRRGFNPPARGRDLLIEGL 262

Query: 253 VGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREM 302
           +     + AK ++++M   G  P  +   + +E + + G +    EF  EM
Sbjct: 263 LNAGYLESAKEMVSKMTKGGFVPDIQTFNILIEAISKSGEV----EFCIEM 309



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 3/132 (2%)

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           +++NI++   +K+G+    +E +      G   +  TY  +I  +  +GK+D A  + + 
Sbjct: 288 QTFNILIEAISKSGEVEFCIEMYYTACKLGLCVDIDTYKTLIPAVSKIGKIDEAFRLLNN 347

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMG-- 290
                 K     Y  +++G      FD+A S  ++M+     P R +   L  M   G  
Sbjct: 348 CVEDGHKPFPSLYAPIIKGMCRNGMFDDAFSFFSDMKVKAHPPNRPVYTMLITMCGRGGK 407

Query: 291 FIQGANEFLREM 302
           F+  AN +L EM
Sbjct: 408 FVDAAN-YLVEM 418


>gi|115489794|ref|NP_001067384.1| Os12g0638900 [Oryza sativa Japonica Group]
 gi|77556813|gb|ABA99609.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113649891|dbj|BAF30403.1| Os12g0638900 [Oryza sativa Japonica Group]
 gi|125580213|gb|EAZ21359.1| hypothetical protein OsJ_37016 [Oryza sativa Japonica Group]
          Length = 859

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 108/276 (39%), Gaps = 18/276 (6%)

Query: 355 EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT 414
           +W P    +L +           +VL+       A  FF W+  QPG+ HD ++   M+ 
Sbjct: 315 KWGPMTEHVLDNLHCKIDAFQANQVLKLLHDHTIALGFFQWLKRQPGFKHDGHSYTTMIG 374

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI 474
           IL +      + +L+ ++ S   +    T   II  YG +     A+K F + +      
Sbjct: 375 ILGQARQFGTMRKLLDEMNSVHCKPTVVTYNRIIHAYGRANYLREAVKVFEEMQKAGYEP 434

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
            +    + Y +L+    K      A+++   M   G+ PD  T+S ++      G     
Sbjct: 435 DR----VTYCTLIDIHAKGGYLEFAMDLYTRMQEVGLSPDTFTYSAMVNCLGKGGHLAAA 490

Query: 535 QKLFSMVRQNGVEPDAYMFKVLI--QAYCKYLSN----------SNLMPDAATKELLKKS 582
            KLF  + +NG  P+   + ++I  QA  +   N          +   PD  T  ++ + 
Sbjct: 491 YKLFCEMVENGCTPNLVTYNIMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEV 550

Query: 583 LWKEGRRKEAAAV--EERCEKINDVPSLALRGHIWA 616
           L   G   EA AV  E R +   D P   L   +W 
Sbjct: 551 LGHCGHLDEAEAVFIEMRHDWAPDEPVYGLLVDLWG 586



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/240 (18%), Positives = 100/240 (41%), Gaps = 1/240 (0%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           +D F     L+   +   AL   + LK  P F H+  +   +  +L ++++   ++ L+ 
Sbjct: 331 IDAFQANQVLKLLHDHTIALGFFQWLKRQPGFKHDGHSYTTMIGILGQARQFGTMRKLLD 390

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
           +++S       V +  ++  Y  +  L   +  + E ++        +Y  ++ ++AK G
Sbjct: 391 EMNSVHCKPTVVTYNRIIHAYGRANYLREAVKVFEEMQKAGYEPDRVTYCTLIDIHAKGG 450

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
               A++ + ++ + G  P++ TY+ M+  L   G L +A ++F  +           Y 
Sbjct: 451 YLEFAMDLYTRMQEVGLSPDTFTYSAMVNCLGKGGHLAAAYKLFCEMVENGCTPNLVTYN 510

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPD 305
           I++        ++    L  +M+  G  P +    + +E +   G +  A     EM  D
Sbjct: 511 IMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRHD 570



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 15/127 (11%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI-RLIIDFYGISKKADA 459
           G+  D      ++ +L   GH++  + +  ++R D    P   +  L++D +G +   D 
Sbjct: 536 GFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRHD--WAPDEPVYGLLVDLWGKAGNVDK 593

Query: 460 ALKAFH----DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
           AL  +H    D      P          +SLL    K  R  DA +VL+ M+  G+VP +
Sbjct: 594 ALGWYHAMLQDGLQPNVPTC--------NSLLSAFLKINRFQDAYSVLQNMLAQGLVPSL 645

Query: 516 QTFSGLM 522
           QT++ L+
Sbjct: 646 QTYTLLL 652


>gi|302759663|ref|XP_002963254.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
 gi|300168522|gb|EFJ35125.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
          Length = 495

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 110/293 (37%), Gaps = 51/293 (17%)

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           V  VL + KSP+ A   F W A Q  + H V+     L  L + GH     ++   +   
Sbjct: 7   VIHVLENIKSPKLASRVFKWAARQEDFEHTVFTYNAYLNALVKGGHGSKARKIFDDMLYK 66

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLR------- 488
                  T  +++       K DAAL+   D  +     + F + +L S L +       
Sbjct: 67  ECLPNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAA 126

Query: 489 ---------------------TLTKCKRD-FD-AINVLEEMIFSGIVPDVQTFSGLMYHF 525
                                T   CK D  D A+ V  EM  + +VP + T++GL+Y +
Sbjct: 127 YELYKRLSDECSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGY 186

Query: 526 ALQGDEK----IVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNL 569
              G  +    +++++    + + V PD Y +  +I  +CK             +  S  
Sbjct: 187 CRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGC 246

Query: 570 MPDAATKELLKKSLWKEGRRKEAAA-----VEERCEKINDVPSLALRGHIWAV 617
            P+  T   L   L   G+  EA A     VE  CE      ++ + GH  A+
Sbjct: 247 SPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARAL 299



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 114/274 (41%), Gaps = 12/274 (4%)

Query: 51  RSNSSNSLSSLLNDRLLDP--FIV---THALRSAPNADSALSIMEALKSNPNFSHNQSTL 105
           +++++  L   +  ++L P  FIV      L      D+A  + + L      S ++ + 
Sbjct: 87  KTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRLSDE--CSLDRISY 144

Query: 106 HALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQ 165
           + L   L K+ +      + G++  +  +   + +  L+  Y  +G +E  ++   E  +
Sbjct: 145 NMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIE 204

Query: 166 RAK----LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG 221
             K    +    SYN V+S + K  +   A    R++I  G  PN  T+  +++ L   G
Sbjct: 205 GKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTG 264

Query: 222 KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRV 281
           KLD A  +F  +     + T+  Y +L+ G     R D+A     +M   G  P      
Sbjct: 265 KLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYT 324

Query: 282 AL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
           AL   + +   ++ A E L+ M    R  NV  Y
Sbjct: 325 ALIGGLCDANKVEDALEILKRMSSTGREPNVVTY 358



 Score = 43.1 bits (100), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 40/202 (19%), Positives = 83/202 (41%), Gaps = 1/202 (0%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           V H L +  +   A  + +      +F H   T +A    L K     + + +  D+   
Sbjct: 7   VIHVLENIKSPKLASRVFKWAARQEDFEHTVFTYNAYLNALVKGGHGSKARKIFDDMLYK 66

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
           + L     +  +++        +  L    +   +    +T   N+++S   K GK   A
Sbjct: 67  ECLPNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAA 126

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
            E ++++ DE ++ +  +Y ++   L    ++D AL VF  +    +  +   Y  L+ G
Sbjct: 127 YELYKRLSDECSL-DRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYG 185

Query: 252 FVGVERFDEAKSLLNEMRDDGK 273
           +    R ++A +LL EM +  K
Sbjct: 186 YCRAGRMEQAMTLLEEMIEGKK 207


>gi|255661028|gb|ACU25683.1| pentatricopeptide repeat-containing protein [Citharexylum
           montevidense]
          Length = 376

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 64/129 (49%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           F  +M+    +G+++ V S W   ++   +  + +Y I++  + K G N +++       
Sbjct: 62  FNTMMRGLFNNGEVDEVFSIWELMKESGFVEDSTTYGILVHGFCKNGYNNKSLHVLEIAK 121

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
            EG   ++  Y+ MI  L  +GKLD A+ V + +     K  ++ Y  L+ G +G  +F+
Sbjct: 122 QEGGALDAFAYSAMISGLCKMGKLDKAVSVLNGMIESGCKPNTQVYNALINGLLGASKFE 181

Query: 260 EAKSLLNEM 268
           +A  +  E+
Sbjct: 182 DAIRVFKEL 190



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 118/265 (44%), Gaps = 29/265 (10%)

Query: 396 VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI--RLIIDFYGI 453
           +A Q G   D +A   M++ L + G ++    ++  +   G + P + +   LI    G 
Sbjct: 119 IAKQEGGALDAFAYSAMISGLCKMGKLDKAVSVLNGMIESGCK-PNTQVYNALINGLLGA 177

Query: 454 SKKADAALKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV 512
           SK  DA ++ F +  T  C P      ++ Y++L+  L K +R  +A ++++EM+  G  
Sbjct: 178 SKFEDA-IRVFKELGTRHCSPT-----IVTYNTLINGLCKGERFAEAYDLVKEMLEKGWN 231

Query: 513 PDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY--------- 563
           P V T+S L+         ++  +L++ V   G +PD  M  +LI   C           
Sbjct: 232 PSVITYSLLIKGLCQDHKVEMALQLWNQVISKGFKPDVQMHNILIHGLCSVGKTEHASEL 291

Query: 564 ---LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP-----SLALRGHIW 615
              +++ N  P+  T   L +  +K G  + A  +  R  +   +P     ++ L+G   
Sbjct: 292 YFDMNHWNCAPNLVTYNTLMEGFYKGGDTRNALVIWARILRNGLLPDIISYNITLKGLCA 351

Query: 616 A--VSSADLTRVHSIYRNSITSIVT 638
              +S A L    ++ +N + +++T
Sbjct: 352 CNRISVAILFLNDAVTKNIVPTVIT 376


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 88/401 (21%), Positives = 150/401 (37%), Gaps = 44/401 (10%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           S+NI++  +    K   A+ TF ++   G  P   T+  ++  L    ++  AL++F  +
Sbjct: 17  SFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQM 76

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
                K     +  L+ G     R  EA +LL+ M +DG  P +      ++ M +MG  
Sbjct: 77  ----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDT 132

Query: 293 QGANEFLREMLPDKRIK-NVRYYE---DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKA 348
             A   LR+M     IK +V  Y    DG   D    D  N  +           +  K 
Sbjct: 133 VSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIE----------MQDKG 182

Query: 349 LANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYA 408
           +   +  +S  +    +  K+    RL+ ++L    SP                  DV  
Sbjct: 183 IFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISP------------------DVVT 224

Query: 409 LEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR 468
              ++  L + G +     L+ ++ S G+     T   ++D    S K   AL+ F   +
Sbjct: 225 FSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQ 284

Query: 469 TLCGPISKFKL-------MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL 521
                I            +  Y+ L+  L    +  +A  + EEM   GIVPD  T+S +
Sbjct: 285 KSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSM 344

Query: 522 MYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           +     Q       ++F  +      P+   F  LI  YCK
Sbjct: 345 INGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCK 385



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 1/132 (0%)

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           ++YNI++S     GK  EA E + ++   G +P++ TY+ MI  L    +LD A ++F +
Sbjct: 304 QTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDS 363

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER-MQEMGF 291
           +           +  L+ G+      D+   L  EM   G        + L R  +++G 
Sbjct: 364 MGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGN 423

Query: 292 IQGANEFLREML 303
           I G+ +  +EM+
Sbjct: 424 INGSLDIFQEMI 435



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 87/201 (43%), Gaps = 17/201 (8%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           +V     ++  L R G V     L+ ++  DG++    T   I+D  G+ K  D  + A 
Sbjct: 80  NVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVD--GMCKMGDT-VSAL 136

Query: 465 HDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
           +  R +   +S  K  +++YS+++  L K  R  DA N+  EM   GI PD+ T+S ++ 
Sbjct: 137 NLLRKM-EELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMIN 195

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMP 571
            F   G     Q+L   +    + PD   F  LI A  K             + +S + P
Sbjct: 196 GFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCP 255

Query: 572 DAATKELLKKSLWKEGRRKEA 592
           +  T   L   L   G+ K+A
Sbjct: 256 NVVTCNTLLDGLCDSGKLKDA 276



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 50/116 (43%)

Query: 160 WNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219
           + E   R  +  T +Y+ +++   K  +  EA + F  +  +   PN  T+  +I     
Sbjct: 326 YEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCK 385

Query: 220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            G +D  LE+F  +    I   +  Y+ L+ GF  V   + +  +  EM   G +P
Sbjct: 386 AGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYP 441


>gi|449511130|ref|XP_004163870.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 847

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 103/223 (46%), Gaps = 3/223 (1%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS-SKFLNVSVNFM 141
           D A+ +++ + S    S ++ + + +  +L + +R +E++ LI  + + SK L   V + 
Sbjct: 368 DQAMELIDQMPSK-GCSPDKVSYYTVMGLLCRDKRLNEIRELIKKMQTDSKLLPDHVTYN 426

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
           +L+Q  S  G  +  L    E  +    +    Y+ ++  Y K GK  +A E   ++  +
Sbjct: 427 SLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIVHAYCKEGKIQKAKELVSEMFSK 486

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G  P+  TYT +++    +GKLD A ++   +     K  +  Y   + G     +  EA
Sbjct: 487 GCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCKPNAVTYTTFLNGLCRNGKSLEA 546

Query: 262 KSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREML 303
           + ++N   ++   P      V +  ++  G +  A + +REM+
Sbjct: 547 RKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEACDVVREMI 589



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 102/244 (41%), Gaps = 9/244 (3%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           +V H LR     + A  ++  +     F  N   ++ L   L +  +  E   L+ +  +
Sbjct: 567 VVVHGLRREGKLNEACDVVREMIGK-GFFPNPVEINLLVHSLCRDGKPREANQLLKECMN 625

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                  VNF  ++  +    DLE  LS  ++     K   T +Y  ++   AKT +  E
Sbjct: 626 KGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLCNKHPDTVTYTALIDALAKTDRIEE 685

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A E   +++ +G +P+  TY  +I      G+++  L++     ++   R    Y +++E
Sbjct: 686 ATELTMKMLRQGLVPSPVTYRSVIHQYCRKGRVEDLLKLLKK--MLLKSRFQTAYNLVIE 743

Query: 251 GFVGVERFDEAKSLLNE-MRDDGKFPGRAMRVALERMQEMGFIQGANE-----FLREMLP 304
                   +EA SLL E +R   +   +   V +E    +G    A +     F R ++P
Sbjct: 744 KLCKFGYLEEANSLLGEVLRTASRTDAKTCHVLMESYLNVGIPMSAYKVACRMFNRNLIP 803

Query: 305 DKRI 308
           D ++
Sbjct: 804 DLKL 807



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 86/208 (41%), Gaps = 17/208 (8%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP-FSTIRLIIDFYGISKKADA 459
           G + D  +   ++ +L R   +  +  LI K+++D   LP   T   +I         D 
Sbjct: 381 GCSPDKVSYYTVMGLLCRDKRLNEIRELIKKMQTDSKLLPDHVTYNSLIQMLSKHGHGDE 440

Query: 460 ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           AL+   +   L   + K +    YS+++    K  +   A  ++ EM   G  PDV T++
Sbjct: 441 ALEILQEAEKLRFKVDKVE----YSAIVHAYCKEGKIQKAKELVSEMFSKGCDPDVVTYT 496

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC---KYLSNSNLM------ 570
            ++  F   G     +K+   + ++  +P+A  +   +   C   K L    +M      
Sbjct: 497 SVLDGFCRIGKLDQAKKMMQQMYKHHCKPNAVTYTTFLNGLCRNGKSLEARKMMNMSEEE 556

Query: 571 ---PDAATKELLKKSLWKEGRRKEAAAV 595
              P+A T  ++   L +EG+  EA  V
Sbjct: 557 WWTPNAITYSVVVHGLRREGKLNEACDV 584



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 89/240 (37%), Gaps = 17/240 (7%)

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           VC VL   +    A  FF W      Y HD      ML IL++    +   R++  +   
Sbjct: 216 VCAVLLSQEDERNALRFFYWADRLWRYRHDSSVYLVMLEILSKTKLCQGAKRILRLMTRR 275

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR 495
            ++L       ++  Y  + +   A+K      TL         + + ++ +  L     
Sbjct: 276 RIQLCPEAFGFVMVSYSRAGRLRDAMKVL----TLMQKAGVEPNLSICNTAIHILVMGNE 331

Query: 496 DFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV 555
              A+   E M+  GI P+V T++ L+  +          +L   +   G  PD   +  
Sbjct: 332 LKKALRFAERMVLIGIAPNVVTYNCLIKGYCNVHQVDQAMELIDQMPSKGCSPDKVSYYT 391

Query: 556 LIQAYC-------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKI 602
           ++   C             K  ++S L+PD  T   L + L K G   EA  + +  EK+
Sbjct: 392 VMGLLCRDKRLNEIRELIKKMQTDSKLLPDHVTYNSLIQMLSKHGHGDEALEILQEAEKL 451



 Score = 40.4 bits (93), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 39/210 (18%), Positives = 84/210 (40%)

Query: 65  RLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTL 124
           R L+P  V   L S  +  +AL           + H+ S    +  +L+K++     K +
Sbjct: 209 RSLNPLQVCAVLLSQEDERNALRFFYWADRLWRYRHDSSVYLVMLEILSKTKLCQGAKRI 268

Query: 125 IGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK 184
           +  ++  +       F  +M  YS +G L   +      ++     +    N  + +   
Sbjct: 269 LRLMTRRRIQLCPEAFGFVMVSYSRAGRLRDAMKVLTLMQKAGVEPNLSICNTAIHILVM 328

Query: 185 TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQ 244
             +  +A+    +++  G  PN  TY  +I+   N+ ++D A+E+   +P          
Sbjct: 329 GNELKKALRFAERMVLIGIAPNVVTYNCLIKGYCNVHQVDQAMELIDQMPSKGCSPDKVS 388

Query: 245 YLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
           Y  ++      +R +E + L+ +M+ D K 
Sbjct: 389 YYTVMGLLCRDKRLNEIRELIKKMQTDSKL 418



 Score = 39.3 bits (90), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 1/131 (0%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y++V+    + GK  EA +  R++I +G  PN     +++  L   GK   A ++    
Sbjct: 564 TYSVVVHGLRREGKLNEACDVVREMIGKGFFPNPVEINLLVHSLCRDGKPREANQLLKEC 623

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFI 292
                      +  ++ GF   +  + A SLL++M    K P      AL + + +   I
Sbjct: 624 MNKGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLCNKHPDTVTYTALIDALAKTDRI 683

Query: 293 QGANEFLREML 303
           + A E   +ML
Sbjct: 684 EEATELTMKML 694


>gi|297737325|emb|CBI26526.3| unnamed protein product [Vitis vinifera]
          Length = 1005

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 88/468 (18%), Positives = 180/468 (38%), Gaps = 52/468 (11%)

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
           N  F   + T   L ++ +K+    E   L  D+   + +  +    +L+  Y  +GD  
Sbjct: 304 NLGFVPEEVTYSLLISLSSKTGNRDEAIKLYEDMRYRRIVPSNYTCASLLTLYYKNGDYS 363

Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
             +S ++E  +   +     Y +++ +Y K G   +A +TF++    G + N +TY  M 
Sbjct: 364 RAVSLFSEMEKNKIVADEVIYGLLIRIYGKLGLYEDAEKTFKETEQLGLLTNEKTYIAMA 423

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
           +  +N G  + AL +   +    I  +   Y++L++ +V  E    A++    +   G  
Sbjct: 424 QVHLNSGNFEKALTIMELMRSRNIWFSRFSYIVLLQCYVMKEDLASAEATFQALSKTGLP 483

Query: 275 PGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRI 334
              +    L    ++  ++ A +F+ ++                   +D  + +    + 
Sbjct: 484 DAGSCNDMLNLYIKLDLLEKAKDFIFQI------------------RKDPVEFDMELCKT 525

Query: 335 AYGVQLKPWL--DPKALANTLDEWSPEVVSLLADAKFVWTTRLVCK-VLRHFKSPETAWH 391
              V  K  +  D K L   +         L  D++F+ T  L+ K +L+       A H
Sbjct: 526 VMKVYCKKGMLRDAKQLIQEMG-----TNGLFKDSEFIQTLSLILKMLLKTAGGLSVASH 580

Query: 392 FFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY 451
                               +++   R G +     L  +L   G     ++I  +I  Y
Sbjct: 581 --------------------LISKFTREGDISKAQNLNDQLVKLGRGAEDASIASLITLY 620

Query: 452 GISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
           G   K   A++ F     + G  S     L+Y S++    KC +  +A ++ EE+   GI
Sbjct: 621 GKQHKLKKAIEVFS---AIEGCTSG---KLIYISMIDAYAKCGKAEEAYHLYEEVTGKGI 674

Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
              V + S +++  A  G  +  + +     ++G+E D   +   I A
Sbjct: 675 ELGVVSISKVVHALANYGKHQEAENVIRRSFEDGLELDTVAYNTFINA 722



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 52/106 (49%)

Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           L  ++Y  ++S Y K GK+ EA   FR++ +EG  P   +Y +MI      G    A E+
Sbjct: 783 LDEKTYTNLISYYGKAGKSHEASLLFREMQEEGIKPGKVSYNIMINVYATAGLHHEAQEL 842

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           F A+        S  YL L+  +    +F EA+  +  M+++G  P
Sbjct: 843 FQAMLRDGCSPDSLTYLALIRAYTQSFKFLEAEETIMSMQNEGVLP 888



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 82/194 (42%), Gaps = 7/194 (3%)

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
            + NL+ +Y  +G        + E ++        SYNI+++VYA  G + EA E F+ +
Sbjct: 787 TYTNLISYYGKAGKSHEASLLFREMQEEGIKPGKVSYNIMINVYATAGLHHEAQELFQAM 846

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
           + +G  P+S TY  +I       K   A E   ++    +  +   +  L+  F      
Sbjct: 847 LRDGCSPDSLTYLALIRAYTQSFKFLEAEETIMSMQNEGVLPSCVHFNQLLSAFAKAGFT 906

Query: 259 DEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREML----PDKRIKN--V 311
           +EA+ + + +   G  P  A  R  L    + G ++    F  ++     PD+ I +  V
Sbjct: 907 EEAERVYHTLLSAGLSPDVACYRTMLRGYLDYGCVEKGITFFEQIRESVEPDRFIMSSAV 966

Query: 312 RYYEDGSDDDEDEN 325
            +Y+    + E E 
Sbjct: 967 HFYKLAGKELEAEG 980



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 73/351 (20%), Positives = 141/351 (40%), Gaps = 46/351 (13%)

Query: 222 KLDSALEVFSALPLMRIKRTSKQ--YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-A 278
           KL  A+EVFSA+       TS +  Y+ +++ +    + +EA  L  E+   G   G  +
Sbjct: 625 KLKKAIEVFSAIE----GCTSGKLIYISMIDAYAKCGKAEEAYHLYEEVTGKGIELGVVS 680

Query: 279 MRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGV 338
           +   +  +   G  Q A   +R           R +EDG + D            +AY  
Sbjct: 681 ISKVVHALANYGKHQEAENVIR-----------RSFEDGLELDT-----------VAYNT 718

Query: 339 QLKPWLDPKAL--ANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWV 396
            +   L    L  AN++ +    +VSL   A  + T   +  V    +  + A   F   
Sbjct: 719 FINAMLGAGRLHFANSIYD---RMVSL-GVAPSIQTYNTMISVYGRGRKLDKAVEMFNKA 774

Query: 397 -AYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY---G 452
                G + D      +++   + G       L  +++ +G++    +  ++I+ Y   G
Sbjct: 775 RCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQEEGIKPGKVSYNIMINVYATAG 834

Query: 453 ISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV 512
           +  +A    +A   D   C P S     L Y +L+R  T+  +  +A   +  M   G++
Sbjct: 835 LHHEAQELFQAMLRDG--CSPDS-----LTYLALIRAYTQSFKFLEAEETIMSMQNEGVL 887

Query: 513 PDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY 563
           P    F+ L+  FA  G  +  ++++  +   G+ PD   ++ +++ Y  Y
Sbjct: 888 PSCVHFNQLLSAFAKAGFTEEAERVYHTLLSAGLSPDVACYRTMLRGYLDY 938



 Score = 39.7 bits (91), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 32/172 (18%), Positives = 75/172 (43%), Gaps = 11/172 (6%)

Query: 107 ALATVLAKSQRNHELK------TLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           ++A+++    + H+LK      + I   +S K +     +++++  Y+  G  E     +
Sbjct: 612 SIASLITLYGKQHKLKKAIEVFSAIEGCTSGKLI-----YISMIDAYAKCGKAEEAYHLY 666

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            E   +   L   S + V+   A  GK+ EA    R+  ++G   ++  Y   I  ++  
Sbjct: 667 EEVTGKGIELGVVSISKVVHALANYGKHQEAENVIRRSFEDGLELDTVAYNTFINAMLGA 726

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           G+L  A  ++  +  + +  + + Y  ++  +    + D+A  + N+ R  G
Sbjct: 727 GRLHFANSIYDRMVSLGVAPSIQTYNTMISVYGRGRKLDKAVEMFNKARCSG 778


>gi|357502615|ref|XP_003621596.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496611|gb|AES77814.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 849

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 7/182 (3%)

Query: 382 HFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPF 441
           HF      + F  W   Q G       +  M+  L R G +    RL    R +G     
Sbjct: 156 HFLLATKCFDFIIWK--QNGRIAKGKLVSTMIGTLGRLGEINHALRLFESARLEGHGNTV 213

Query: 442 STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAI- 500
            +   +I  YG +     A+  F   R+       +  ++ Y+SL+    K + DFD + 
Sbjct: 214 YSFSAMISAYGRNGHFSDAVDLFRSMRSW----GVYPNLISYNSLIDAGAKGEVDFDVVV 269

Query: 501 NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
              +EM+  GIVPD  T++ L+   A +G  +  QKL S + Q G+  DA+ +   +   
Sbjct: 270 KFFDEMLAEGIVPDRLTYNSLLSVCASKGMWETAQKLLSEMDQKGIVRDAFTYNTYLDTL 329

Query: 561 CK 562
           CK
Sbjct: 330 CK 331



 Score = 45.4 bits (106), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 34/164 (20%), Positives = 70/164 (42%), Gaps = 4/164 (2%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           Q G   D +     L  L + G ++L  R++ ++ S  +     T   +ID    +   +
Sbjct: 312 QKGIVRDAFTYNTYLDTLCKGGQIDLARRVLEEMSSRRVWPTVVTYSTMIDGCAKANLLE 371

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
            AL  + + +     + +      Y++++    K  R  +AI   +EM   G+  DV T+
Sbjct: 372 DALNLYEEMKLRSISVDRVS----YNTMVGIYAKLGRFDEAIGQCKEMESCGMKRDVVTY 427

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           + L+  +   G    V++LF  ++   + P+   +  +I  Y K
Sbjct: 428 NALLSGYGRYGMYDEVRRLFEEMKAWNIYPNTLTYSTMIDVYTK 471



 Score = 39.3 bits (90), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 28/148 (18%), Positives = 65/148 (43%)

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
           + ++ ++SS +     V +  ++   + +  LE  L+ + E + R+  +   SYN ++ +
Sbjct: 339 RRVLEEMSSRRVWPTVVTYSTMIDGCAKANLLEDALNLYEEMKLRSISVDRVSYNTMVGI 398

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
           YAK G+  EA+   +++   G   +  TY  ++      G  D    +F  +    I   
Sbjct: 399 YAKLGRFDEAIGQCKEMESCGMKRDVVTYNALLSGYGRYGMYDEVRRLFEEMKAWNIYPN 458

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMR 269
           +  Y  +++ +     F EA  +  + +
Sbjct: 459 TLTYSTMIDVYTKGGMFQEAMDVYKDFK 486



 Score = 38.9 bits (89), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 26/118 (22%), Positives = 55/118 (46%)

Query: 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT 211
           D ++V+  ++E      +    +YN ++SV A  G    A +   ++  +G + ++ TY 
Sbjct: 264 DFDVVVKFFDEMLAEGIVPDRLTYNSLLSVCASKGMWETAQKLLSEMDQKGIVRDAFTYN 323

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
             ++ L   G++D A  V   +   R+  T   Y  +++G       ++A +L  EM+
Sbjct: 324 TYLDTLCKGGQIDLARRVLEEMSSRRVWPTVVTYSTMIDGCAKANLLEDALNLYEEMK 381



 Score = 38.9 bits (89), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 8/139 (5%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + + +L+   ++ G  E      +E  Q+  +    +YN  +    K G+    ++  R+
Sbjct: 285 LTYNSLLSVCASKGMWETAQKLLSEMDQKGIVRDAFTYNTYLDTLCKGGQ----IDLARR 340

Query: 198 VIDEGA----IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
           V++E +     P   TY+ MI+       L+ AL ++  + L  I      Y  +V  + 
Sbjct: 341 VLEEMSSRRVWPTVVTYSTMIDGCAKANLLEDALNLYEEMKLRSISVDRVSYNTMVGIYA 400

Query: 254 GVERFDEAKSLLNEMRDDG 272
            + RFDEA     EM   G
Sbjct: 401 KLGRFDEAIGQCKEMESCG 419


>gi|255660942|gb|ACU25640.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 484

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 4/188 (2%)

Query: 375 LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
           LV  VL   K+ E A  FF WV     + H+     K++ IL R   +     ++  +  
Sbjct: 14  LVYNVLHSAKNSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPK 73

Query: 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCK 494
            G+        L+ID YG +     ++K F     L       + +  Y +L + + +  
Sbjct: 74  KGLEWDEDLWVLMIDSYGKAGIVQESVKMFQKMEEL----GVERTIKSYDALFKVILRRG 129

Query: 495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK 554
           R   A     +M+  GI P   TF+ +M+ F L G  +   + F  ++   + PD   + 
Sbjct: 130 RYMMAKRYFNKMLSEGIEPTRHTFNVMMWGFFLSGKVETANRFFEDMKSREIMPDVVTYN 189

Query: 555 VLIQAYCK 562
            ++  YC+
Sbjct: 190 TMVNGYCR 197



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 100/215 (46%), Gaps = 4/215 (1%)

Query: 56  NSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKS 115
           NS+ +L+    +D  +V + L SA N++ AL     ++ +  F HN+ T   +  +L ++
Sbjct: 1   NSIRNLVPS--IDHELVYNVLHSAKNSEHALQFFRWVERSNLFEHNRETHLKIIEILGRA 58

Query: 116 QRNHELKTLIGDISSSKFLNVSVNFMNLM-QWYSTSGDLELVLSTWNEYRQRAKLLSTES 174
            + +  + ++ D+   K L    +   LM   Y  +G ++  +  + +  +     + +S
Sbjct: 59  SKLNHARCILLDMPK-KGLEWDEDLWVLMIDSYGKAGIVQESVKMFQKMEELGVERTIKS 117

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           Y+ +  V  + G+   A   F +++ EG  P   T+ VM+      GK+++A   F  + 
Sbjct: 118 YDALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMMWGFFLSGKVETANRFFEDMK 177

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
              I      Y  +V G+  V++ +EA+    EM+
Sbjct: 178 SREIMPDVVTYNTMVNGYCRVKKMEEAEKYFVEMK 212



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 63/128 (49%), Gaps = 1/128 (0%)

Query: 142 NLMQW-YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
           N+M W +  SG +E     + + + R  +    +YN +++ Y +  K  EA + F ++  
Sbjct: 154 NVMMWGFFLSGKVETANRFFEDMKSREIMPDVVTYNTMVNGYCRVKKMEEAEKYFVEMKG 213

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
               P   TYT +I+  V++ ++D AL +   +    +K  +  Y  L+ G    E+  E
Sbjct: 214 RNIEPTVVTYTTLIKGYVSVDRVDDALRLVEEMKGFGMKPNAITYSTLLPGLCNAEKMSE 273

Query: 261 AKSLLNEM 268
           A+S+L EM
Sbjct: 274 ARSILKEM 281


>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
          Length = 708

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 91/525 (17%), Positives = 204/525 (38%), Gaps = 43/525 (8%)

Query: 91  ALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS 150
           AL  N N       +  +    A++ +  E   ++ ++ +   +  +     ++      
Sbjct: 143 ALIGNKNLERANEVMQCMVMNFAENGKLKEAVNMVVEMQNQGLVXSTQTLNCVLDVAVGM 202

Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
           G +E+  + + E  QR       S+ +++      G+  EA +    +++ G I ++ T 
Sbjct: 203 GLVEIAENMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATC 262

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
           T++I+     G ++  +  F  +  M +      +  L+ G        +A  LL EM  
Sbjct: 263 TLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVR 322

Query: 271 DGKFPGRAMRVAL-ERMQEMGFIQGANE-FLREMLPDKRIKNVRYYEDGSDDDEDENDDN 328
            G  P       L + + + G+ + A   FL+ +  D    NV  Y    +    E+  N
Sbjct: 323 RGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLN 382

Query: 329 NSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPET 388
            + + ++        +  + L    + ++      L D          CKV    ++ E 
Sbjct: 383 RAEMLLSR-------MQEQGLVPNTNTYTT-----LIDGH--------CKVGNFVRAYEL 422

Query: 389 AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII 448
                  +  + G++ ++Y    ++  L + G ++   RL+ K+   G++    T  +++
Sbjct: 423 MD-----LMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILM 477

Query: 449 DFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF 508
             +   ++AD        ++ L   +     +  Y++L+    + K+  ++  + EE + 
Sbjct: 478 SVH--CRQADTNRSLVFFNKML--KVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVS 533

Query: 509 SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------ 562
            G++P  +T++ ++  +   G+  +  KLF  +  +G  PD+  +  LI   CK      
Sbjct: 534 LGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDD 593

Query: 563 ------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEK 601
                  + +  L P   T+  L     K+     A  V +R EK
Sbjct: 594 ARNLYDAMMDKGLSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEK 638



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/234 (21%), Positives = 91/234 (38%), Gaps = 17/234 (7%)

Query: 92  LKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG 151
           L     FS N  T +A+   L K     E   L+  +S        V +  LM  +    
Sbjct: 425 LMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQA 484

Query: 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT 211
           D    L  +N+  +        SY  ++S + +  +  E+   F + +  G IP  +TYT
Sbjct: 485 DTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYT 544

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
            MI      G    A+++F  +        S  Y  L+ G     + D+A++L + M D 
Sbjct: 545 SMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDK 604

Query: 272 GKFPGRAMRV-----------------ALERMQEMGFIQGANEFLREMLPDKRI 308
           G  P    R+                  L+R+++  +I+  N  +R++  + ++
Sbjct: 605 GLSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIRTVNTLVRKLCSEGKL 658


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 1/150 (0%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  +S SGD        +E +++       +YN+++      G+  +AV+   ++ + G
Sbjct: 410 LITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVG 469

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             PN  TY  +I+   + G + SA E+ + +   R +     Y + ++ F  + + DEA 
Sbjct: 470 LEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEAN 529

Query: 263 SLLNEMRDDGKFP-GRAMRVALERMQEMGF 291
            LLNEM D    P G       E M E G+
Sbjct: 530 DLLNEMLDKCLVPNGITYETIKEGMMEKGY 559



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 12/134 (8%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +++Y+ L+    +  +  DA+ V E M   GI P+V T++ L+  F+  GD +    L  
Sbjct: 369 VVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLD 428

Query: 540 MVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEG 587
            +++ G+E D   + VLI A C              +S   L P+  T   + +    +G
Sbjct: 429 EMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKG 488

Query: 588 RRKEAAAVEERCEK 601
             K A  +  R EK
Sbjct: 489 NIKSAYEIRTRMEK 502



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 71/189 (37%), Gaps = 35/189 (18%)

Query: 119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV 178
           + +  L+ ++  +     +V F  L+  Y  + +    +  + E +Q+    S  +YN +
Sbjct: 246 YHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSL 305

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRT----------------------------- 209
           +S     GK  E V+   ++ D G  PN  T                             
Sbjct: 306 ISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNV 365

Query: 210 ------YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
                 Y ++I+    LGK++ A+ V  A+    I      Y  L+ GF     +  A  
Sbjct: 366 EPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASG 425

Query: 264 LLNEMRDDG 272
           LL+EM++ G
Sbjct: 426 LLDEMKEKG 434



 Score = 43.1 bits (100), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 65/141 (46%), Gaps = 4/141 (2%)

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL 479
           G++  VD L+ ++   G+     T  ++I+ Y  +    AA++ F + +      S    
Sbjct: 243 GNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAAS---- 298

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y+SL+  L    +  + + ++EEM   G+ P+  TF  ++  F  +G          
Sbjct: 299 VVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWID 358

Query: 540 MVRQNGVEPDAYMFKVLIQAY 560
            + +  VEPD  ++ +LI  Y
Sbjct: 359 GMTERNVEPDVVIYNILIDVY 379



 Score = 39.7 bits (91), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 1/141 (0%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YNI++ VY + GK  +A+     +  +G  PN  TY  +I      G   SA  +   + 
Sbjct: 372 YNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMK 431

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQ 293
              I+     Y +L+          +A  LL+EM + G  P        ++   + G I+
Sbjct: 432 EKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIK 491

Query: 294 GANEFLREMLPDKRIKNVRYY 314
            A E    M   ++  NV  Y
Sbjct: 492 SAYEIRTRMEKCRKRANVVTY 512


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 99/478 (20%), Positives = 185/478 (38%), Gaps = 88/478 (18%)

Query: 136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF 195
           V+VN   L++    +G ++  L+  +   ++   L   SY  +++   K+G+   A++  
Sbjct: 124 VTVN--TLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGLCKSGETRAALQLL 181

Query: 196 RQVIDEGAI---PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
           R++  EG +   P+   YT +I+       +  A +++S + + +I      +  L+ GF
Sbjct: 182 RKI--EGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGF 239

Query: 253 VGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNV 311
             V +  EA  LLNEM  +   P      + ++ + + G ++ A   L            
Sbjct: 240 CIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVL------------ 287

Query: 312 RYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSL--LADAKF 369
                               V I  GV+                  P VV+   L D  F
Sbjct: 288 -------------------SVMIKQGVE------------------PNVVTYTSLMDGYF 310

Query: 370 VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
           +             K    A H F  ++ + G T +V++   M+  L ++  V+   +L 
Sbjct: 311 L------------VKEVNKAKHVFNTISLR-GVTPNVHSYSVMINGLCKNKMVDEAVKLF 357

Query: 430 AKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRT 489
            ++    M     T   +ID    S +         +      P +    ++ Y+SLL  
Sbjct: 358 KEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPAN----IITYNSLLNG 413

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
           L K  +   AI +L +M   GI PD+ T++ L+      G  K  Q+++  +   G   +
Sbjct: 414 LCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLN 473

Query: 550 AYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
             M+ V+I   CK             + ++  MPDA T E L  +L+K  +  +A  +
Sbjct: 474 IRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETLISALFKNNKNGKAVKL 531



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 7/171 (4%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           +V + +L+     SG +  V    +E   R +  +  +YN +++   K  +  +A+    
Sbjct: 369 TVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLT 428

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           ++ DEG  P+  TYT +++ L   G+L  A  ++  L         + Y +++ G     
Sbjct: 429 KMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEG 488

Query: 257 RFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGAN----EFLREML 303
            FDEA SLL++M D+G  P     V  E +    F    N    + LREM+
Sbjct: 489 FFDEALSLLSQMEDNGCMPD---AVTYETLISALFKNNKNGKAVKLLREMI 536


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 51/102 (50%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           +T  Y  +M    K GK  EAV    +++D G  PN  TY  +I+ L   G +  A+  F
Sbjct: 479 NTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHF 538

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           + +  + +    + Y  L++GF  +   ++A  L+NEM D G
Sbjct: 539 NKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKG 580



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 67/138 (48%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V + +L+  Y   GDLE V    +E R+        +YN +++ ++K G+  +A   F +
Sbjct: 236 VTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGE 295

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +  +G + N  T++  ++     G +  A+++F+ + +  +      Y  LV+G     R
Sbjct: 296 MKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGR 355

Query: 258 FDEAKSLLNEMRDDGKFP 275
            D+A  LL+EM   G  P
Sbjct: 356 LDDAIVLLDEMVHQGLVP 373



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 76/169 (44%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T +AL    +K  R  +  +  G++     +   V F   +  +   G ++  +  + + 
Sbjct: 272 TYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQM 331

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
           R R  + +  +Y  ++    K G+  +A+    +++ +G +PN  TYTVM++ L   GK+
Sbjct: 332 RVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKV 391

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
             A  V S +    +K     Y  L+ G       + A  LLN+M++ G
Sbjct: 392 AEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKG 440



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 85/184 (46%), Gaps = 4/184 (2%)

Query: 89  MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS 148
           M+A+  +P+      T ++L     K     E++ L+ ++  S      V +  L+  +S
Sbjct: 226 MKAMGCSPDVV----TYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFS 281

Query: 149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSR 208
             G +E   S + E +++  + +  +++  +  + K G   EA++ F Q+   G +PN  
Sbjct: 282 KFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEF 341

Query: 209 TYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           TYT +++     G+LD A+ +   +    +      Y ++V+G     +  EA ++L+ M
Sbjct: 342 TYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLM 401

Query: 269 RDDG 272
              G
Sbjct: 402 ERGG 405



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 101/241 (41%), Gaps = 28/241 (11%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           +V+    ++  L + G +     L  ++++ G      T   +ID YG     +   +  
Sbjct: 199 NVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLV 258

Query: 465 HDDR-TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
            + R + C        ++ Y++L+   +K  R   A +   EM   G+V +V TFS  + 
Sbjct: 259 SEMRKSGCAAD-----VVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVD 313

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMP 571
            F  +G  +   KLF+ +R  G+ P+ + +  L+   CK             + +  L+P
Sbjct: 314 AFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVP 373

Query: 572 DAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAVSSADLTRVHSIYRN 631
           +  T  ++   L KEG+  EA          ++V SL  RG + A      T +H  + N
Sbjct: 374 NVVTYTVMVDGLCKEGKVAEA----------DNVLSLMERGGVKANELLYTTLIHGHFMN 423

Query: 632 S 632
           +
Sbjct: 424 N 424



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           A S L  M      PN     + + AL     K+ +  E   L+  I  S F    V + 
Sbjct: 464 AKSLLHKMAGCGLRPNTVIYTTIMDALF----KAGKESEAVALLHKILDSGFQPNVVTYC 519

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            L+     +G +   +S +N+ R+     + ++Y  ++  + K G   +A+    ++ID+
Sbjct: 520 ALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDK 579

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G   +   YT +I+  +    L  A  + + +    ++     Y   + GF  +    EA
Sbjct: 580 GMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEA 639

Query: 262 KSLLNEMRDDGKFPGRAMRVALER-MQEMGFIQGANEFLREM 302
           + +L+EM   G  P + +   L R  Q++G ++ A+    EM
Sbjct: 640 RGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEM 681



 Score = 46.6 bits (109), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 50/245 (20%), Positives = 91/245 (37%), Gaps = 53/245 (21%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           + G   DV     ++   ++ G +E       +++  G+     T    +D +       
Sbjct: 263 KSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQ 322

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
            A+K F   R      ++F     Y+SL+    K  R  DAI +L+EM+  G+VP+V T+
Sbjct: 323 EAMKLFAQMRVRGMMPNEFT----YTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTY 378

Query: 519 S------------------------------GLMY------HFALQGDEKIVQKLFSMVR 542
           +                               L+Y      HF     E+ +  L + ++
Sbjct: 379 TVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALD-LLNQMK 437

Query: 543 QNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRK 590
             G+E D  ++  LI   CK             ++   L P+      +  +L+K G+  
Sbjct: 438 NKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKES 497

Query: 591 EAAAV 595
           EA A+
Sbjct: 498 EAVAL 502



 Score = 42.0 bits (97), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 67/165 (40%), Gaps = 1/165 (0%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  L+  +  + + E  L   N+ + +   L    Y  ++    K  K  EA     ++ 
Sbjct: 413 YTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMA 472

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
             G  PN+  YT +++ L   GK   A+ +   +     +     Y  L++G        
Sbjct: 473 GCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSIS 532

Query: 260 EAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREML 303
           EA S  N+MR+ G  P  +A    ++   ++G +  A   + EM+
Sbjct: 533 EAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMI 577


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 1/167 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V + +L+      G +   L   +E   R +  +  +Y+ ++    K     +A+     
Sbjct: 377 VTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTN 436

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + D+G  P+  TYT++I+ L   G+L+ A  VF  L +         Y ++++GF     
Sbjct: 437 LKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGF 496

Query: 258 FDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREML 303
           FD+A +LL++M D+G  P  +   + +  + E      A + LREM+
Sbjct: 497 FDKALALLSKMEDNGCIPNAKTYELVILSLFEKDENDTAEKLLREMI 543



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 97/510 (19%), Positives = 194/510 (38%), Gaps = 77/510 (15%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           +  +L  A +  +ALS+ + ++ N     +  T + L    ++   N    ++   I   
Sbjct: 67  ILSSLVKAKHHSTALSLHQQMELN-GIESDFFTFNILINCFSQLGLNSLSFSIFAKILKK 125

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
            +   ++ F  L++     G +   L   ++   +   L   SY  +++   K G+   A
Sbjct: 126 GYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAA 185

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
           ++  ++V  +   PN+  Y ++I+++     ++ A +++S +   RI      Y  L+ G
Sbjct: 186 LQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISG 245

Query: 252 FVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKN 310
           F  V + + A  L N+M+ +   P      + ++   + G +  A   L  M+ D    +
Sbjct: 246 FSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPD 305

Query: 311 VRYYE---DG------SDDDEDENDDNNSGVRIA----YGVQLKPWLDPKALANTLDEWS 357
           V  Y    DG       +  +D  D   SG  IA    Y   +  +   K +   ++ + 
Sbjct: 306 VVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFE 365

Query: 358 --------PEVV--SLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY 407
                   P VV  S L D         +CK+ R F + +          +  G   ++ 
Sbjct: 366 EMRCRKIIPNVVTYSSLIDG--------LCKLGRIFYALKLVDEM-----HDRGQPPNIV 412

Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDD 467
               +L  L ++ HV+    L+  L+  G+R    T                        
Sbjct: 413 TYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYT------------------------ 448

Query: 468 RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
                          Y+ L++ L +  R  DA NV E+++  G   DV  ++ ++  F  
Sbjct: 449 ---------------YTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCD 493

Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           +G       L S +  NG  P+A  ++++I
Sbjct: 494 KGFFDKALALLSKMEDNGCIPNAKTYELVI 523



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 86/205 (41%), Gaps = 16/205 (7%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           +VY    ++    + G V     ++A +  D ++    T   ++D Y    K + A   F
Sbjct: 270 NVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIF 329

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
            D     G I+  ++   Y++++    K K   +AIN+ EEM    I+P+V T+S L+  
Sbjct: 330 -DSMASGGVIANVQI---YTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDG 385

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPD 572
               G      KL   +   G  P+   +  ++ A CK             L +  + PD
Sbjct: 386 LCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPD 445

Query: 573 AATKELLKKSLWKEGRRKEAAAVEE 597
             T  +L K L + GR ++A  V E
Sbjct: 446 MYTYTILIKGLCQSGRLEDAQNVFE 470



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 71/165 (43%), Gaps = 6/165 (3%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           + GY         ++  L   GH+        K+ + G  L   +   +I+      +  
Sbjct: 124 KKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLCKVGRIT 183

Query: 459 AALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
           AAL+     D  L  P +     ++Y+ ++  + K K   DA ++  +M+   I PDV T
Sbjct: 184 AALQLLKRVDGKLVQPNA-----VMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFT 238

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           ++ L+  F+          LF+ +++  + P+ Y F +L+  +CK
Sbjct: 239 YNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCK 283



 Score = 45.8 bits (107), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 12/125 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ YSS+L  L K      AI +L  +   GI PD+ T++ L+      G  +  Q +F 
Sbjct: 411 IVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFE 470

Query: 540 MVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEG 587
            +   G   D Y + V+IQ +C              + ++  +P+A T EL+  SL+++ 
Sbjct: 471 DLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVILSLFEKD 530

Query: 588 RRKEA 592
               A
Sbjct: 531 ENDTA 535



 Score = 43.5 bits (101), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 66/328 (20%), Positives = 129/328 (39%), Gaps = 44/328 (13%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-ALRSAPNADS----ALSIMEALKSNP 96
           +ID++  A   N +  L S +  + + P + T+ AL S  +A S    A+ +   +K   
Sbjct: 207 IIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKE- 265

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
           N + N  T + L     K  + ++ K ++  +         V + +LM  Y +   +   
Sbjct: 266 NINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKA 325

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
              ++       + + + Y  +++ + K     EA+  F ++     IPN  TY+ +I+ 
Sbjct: 326 KDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDG 385

Query: 217 LVNLGKL-----------------------------------DSALEVFSALPLMRIKRT 241
           L  LG++                                   D A+ + + L    I+  
Sbjct: 386 LCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPD 445

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQGANEFLR 300
              Y IL++G     R ++A+++  ++   G      A  V ++   + GF   A   L 
Sbjct: 446 MYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLS 505

Query: 301 EMLPDKRIKNVRYYE--DGSDDDEDEND 326
           +M  +  I N + YE    S  ++DEND
Sbjct: 506 KMEDNGCIPNAKTYELVILSLFEKDEND 533



 Score = 40.0 bits (92), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 41/79 (51%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           ++ +L +L K K    A+++ ++M  +GI  D  TF+ L+  F+  G   +   +F+ + 
Sbjct: 64  FNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCFSQLGLNSLSFSIFAKIL 123

Query: 543 QNGVEPDAYMFKVLIQAYC 561
           + G  P A  F  LI+  C
Sbjct: 124 KKGYHPTAITFNTLIKGLC 142


>gi|255660940|gb|ACU25639.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 484

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 4/188 (2%)

Query: 375 LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
           LV  VL   K+ E A  FF WV     + H+     K++ IL R   +     ++  +  
Sbjct: 14  LVYNVLHSAKNSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPK 73

Query: 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCK 494
            G+        L+ID YG +     ++K F     L       + +  Y +L + + +  
Sbjct: 74  KGLEWDEDLWVLMIDSYGKAGIVQESVKMFQKMEEL----GVERTIKSYDALFKVILRRG 129

Query: 495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK 554
           R   A     +M+  GI P   TF+ +M+ F L G  +   + F  ++   + PD   + 
Sbjct: 130 RYMMAKRYFNKMLSEGIEPTRHTFNVMMWGFFLSGKVETANRFFEDMKSREIMPDVVTYN 189

Query: 555 VLIQAYCK 562
            ++  YC+
Sbjct: 190 TMVNGYCR 197



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 100/215 (46%), Gaps = 4/215 (1%)

Query: 56  NSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKS 115
           NS+ +L+    +D  +V + L SA N++ AL     ++ +  F HN+ T   +  +L ++
Sbjct: 1   NSIRNLVPS--IDHELVYNVLHSAKNSEHALQFFRWVERSNLFEHNRETHLKIIEILGRA 58

Query: 116 QRNHELKTLIGDISSSKFLNVSVNFMNLM-QWYSTSGDLELVLSTWNEYRQRAKLLSTES 174
            + +  + ++ D+   K L    +   LM   Y  +G ++  +  + +  +     + +S
Sbjct: 59  SKLNHARCILLDMPK-KGLEWDEDLWVLMIDSYGKAGIVQESVKMFQKMEELGVERTIKS 117

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           Y+ +  V  + G+   A   F +++ EG  P   T+ VM+      GK+++A   F  + 
Sbjct: 118 YDALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMMWGFFLSGKVETANRFFEDMK 177

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
              I      Y  +V G+  V++ +EA+    EM+
Sbjct: 178 SREIMPDVVTYNTMVNGYCRVKKMEEAEKYFVEMK 212



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 1/130 (0%)

Query: 142 NLMQW-YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
           N+M W +  SG +E     + + + R  +    +YN +++ Y +  K  EA + F ++  
Sbjct: 154 NVMMWGFFLSGKVETANRFFEDMKSREIMPDVVTYNTMVNGYCRVKKMEEAEKYFVEMKG 213

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
               P   TYT +I+  V++ ++D AL     +    +K  +  Y  L+ G    E+  E
Sbjct: 214 RNIEPTVVTYTTLIKGYVSVDRVDDALRFVEEMKGFGMKPNAITYSTLLPGLCNAEKMSE 273

Query: 261 AKSLLNEMRD 270
           A+S+L EM D
Sbjct: 274 ARSILKEMVD 283


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 1/193 (0%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L K +R  E   L  ++   K     V +  L+      G +   L   +E R   K + 
Sbjct: 262 LCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVD 321

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
             +YN ++    K     +A+   +++ D+G  PN  TYT +I+ L   G+L+ A  +F 
Sbjct: 322 IITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQ 381

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMG 290
            +       T   Y +++ G      FDEA +LL+ M D+   P   +    +  + E G
Sbjct: 382 EILTEGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDAVSYETIIYALSEKG 441

Query: 291 FIQGANEFLREML 303
                N+ L  M+
Sbjct: 442 ETVKTNKLLCAMI 454



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 14/138 (10%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +++YS+++ +L K K   DA  +  EMI  GI P+V TFS L+         K    L +
Sbjct: 147 VVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLA 206

Query: 540 MVRQNGVEPDAYMFKVLIQAYC------KYLSNSNLM------PDAATKELLKKSLWKEG 587
           M+ + GV+P+   +  ++  YC      K L+  N+M      P+     ++   L K+ 
Sbjct: 207 MMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKK 266

Query: 588 RRKEAAAV--EERCEKIN 603
           R  EA  +  E   +KIN
Sbjct: 267 RVDEAMNLFKEMHWKKIN 284



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 12/118 (10%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           +S L+  L K ++   A+N+L  M+  G+ P+V T+  +M  + L         +F+++ 
Sbjct: 185 FSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMV 244

Query: 543 QNGVEPDAYMFKVLIQAYCKYLSNSNLM------------PDAATKELLKKSLWKEGR 588
           Q GVEP+ + + ++I   CK       M            PD  T  +L   L K G+
Sbjct: 245 QEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGK 302



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 87/206 (42%), Gaps = 1/206 (0%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T   L   L K ++  +   L+  +         V +  +M  Y     +   L+ +
Sbjct: 181 NVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIF 240

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           N   Q     +   YNI+++   K  +  EA+  F+++  +   P+  TY ++I+ L  L
Sbjct: 241 NVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKL 300

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR 280
           GK+ ++LE+   +  +        Y  L+         D+A +L+ E++D G  P     
Sbjct: 301 GKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTY 360

Query: 281 VAL-ERMQEMGFIQGANEFLREMLPD 305
             L + + + G ++ A    +E+L +
Sbjct: 361 TTLIDGLCKDGRLEDAYVIFQEILTE 386



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 86/435 (19%), Positives = 158/435 (36%), Gaps = 53/435 (12%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           S  +  I+M+ Y  TG          +++  G  PNS T+T +I+ +   G+   AL   
Sbjct: 44  SIVTLTILMNCYCHTGGITFLFSILTKILKMGYEPNSITFTTLIKGMCLNGQAYEALLFH 103

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEM 289
             +     K     Y IL+ G     +  E ++ +  +R         M    ++ + + 
Sbjct: 104 DHVVAHGFKLDQVSYAILMNGLC---KMGETRAAMQMLRKTWVNADVVMYSTIIDSLCKG 160

Query: 290 GFIQGANEFLREMLPDKRIKNVRYYEDGSD----DDEDENDDNNSGVRIAYGVQLKPWLD 345
            F+  A     EM+      NV  +    D    D + +   N   + +  GV+      
Sbjct: 161 KFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVK------ 214

Query: 346 PKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHD 405
                       P VV+  A          V K L  F            V  Q G   +
Sbjct: 215 ------------PNVVTYGAIMDGYCLVNQVNKALNIFN-----------VMVQEGVEPN 251

Query: 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465
           V+    ++  L +   V+    L  ++    +     T  ++ID      K   +L+   
Sbjct: 252 VWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVD 311

Query: 466 DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF 525
           + R+    I K   ++ Y+SLL  L K      AI +++E+   GI P+V T++ L+   
Sbjct: 312 EMRS----IGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGL 367

Query: 526 ALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDA 573
              G  +    +F  +   G     + + V+I   CK             + ++  +PDA
Sbjct: 368 CKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDA 427

Query: 574 ATKELLKKSLWKEGR 588
            + E +  +L ++G 
Sbjct: 428 VSYETIIYALSEKGE 442



 Score = 46.6 bits (109), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 85/214 (39%), Gaps = 30/214 (14%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   +VY    ++  L +    +    L+A +   G++    T   I+D Y +  + + A
Sbjct: 177 GIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKA 236

Query: 461 LKAFH-------DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP 513
           L  F+       +    C           Y+ ++  L K KR  +A+N+ +EM +  I P
Sbjct: 237 LNIFNVMVQEGVEPNVWC-----------YNIIINGLCKKKRVDEAMNLFKEMHWKKINP 285

Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY---------- 563
           DV T++ L+      G      +L   +R  G   D   +  L+ A CK           
Sbjct: 286 DVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLV 345

Query: 564 --LSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
             + +  + P+  T   L   L K+GR ++A  +
Sbjct: 346 KEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVI 379



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 44/88 (50%)

Query: 474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
           IS    +L ++ +L +L K      AI++  ++ F+GI P + T + LM  +   G    
Sbjct: 4   ISPTPPILQFNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGGITF 63

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           +  + + + + G EP++  F  LI+  C
Sbjct: 64  LFSILTKILKMGYEPNSITFTTLIKGMC 91


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 116/271 (42%), Gaps = 32/271 (11%)

Query: 65  RLLDPFIVT-------HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR 117
           R ++P +VT       H L+S    D A+ + + +  N  ++ N  + + L     K QR
Sbjct: 308 RGVEPNVVTYNALMDGHCLQS--EMDEAVKVFDTMVHN-GYAPNVISYNTLINGYCKIQR 364

Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI 177
             +   L  ++   + +  +V +  LM      G L+  ++ ++E     ++    +Y I
Sbjct: 365 MDKATYLFEEMCQKELIPNTVTYNTLMHXCHV-GRLQDAIALFHEMVAHGQIPDLATYRI 423

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           ++    K     EA+   + +      P+ + YT++I+ +   G+L++A ++FS L    
Sbjct: 424 LLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKG 483

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG---------------RAMRVA 282
           ++   + Y I++ G       DEA  L  EM  +G  P                 A+R A
Sbjct: 484 LRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALR-A 542

Query: 283 LERMQEM---GFIQ--GANEFLREMLPDKRI 308
           ++ +QEM   GF         L EML D ++
Sbjct: 543 IQLLQEMLARGFSADVSTTTLLVEMLCDDKL 573



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 13/142 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++++S+++  L K  +  +A +V++ MI  G+ P+V T++ LM    LQ +     K+F 
Sbjct: 279 VVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFD 338

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEG 587
            +  NG  P+   +  LI  YCK             +    L+P+  T   L       G
Sbjct: 339 TMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHX-CHVG 397

Query: 588 RRKEAAAVEERCEKINDVPSLA 609
           R ++A A+         +P LA
Sbjct: 398 RLQDAIALFHEMVAHGQIPDLA 419



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 58/140 (41%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           ++ V+    K GK  EA +    +I  G  PN  TY  +++      ++D A++VF  + 
Sbjct: 282 FSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMV 341

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQG 294
                     Y  L+ G+  ++R D+A  L  EM      P       L     +G +Q 
Sbjct: 342 HNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHXCHVGRLQD 401

Query: 295 ANEFLREMLPDKRIKNVRYY 314
           A     EM+   +I ++  Y
Sbjct: 402 AIALFHEMVAHGQIPDLATY 421



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G+  D      ++  L   G +     L  K+  +G +    T   +I+        +AA
Sbjct: 134 GHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAA 193

Query: 461 LKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           ++     ++  C P      +++Y+S++ +L K ++  +A N+  +M+  GI PD+ T++
Sbjct: 194 IRLLRSMEQGNCQPD-----VVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYT 248

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            L++      + K V  L + +  + + PD  +F  ++ A CK
Sbjct: 249 SLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCK 291



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 98/516 (18%), Positives = 190/516 (36%), Gaps = 94/516 (18%)

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           +S ++F + S+NF            L+  LS++N         ST  +N +++  AKT K
Sbjct: 35  LSHNRFHSKSLNF----------NTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKT-K 83

Query: 188 NFEAVETFRQVIDE-GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
            +  V +    +D  G  P+  T  ++I    +L +L  A  V + +  +  +  +  + 
Sbjct: 84  QYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFT 143

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPD 305
            L+ G     +  +A  L ++M  +G  P       L   + ++G    A   LR M   
Sbjct: 144 TLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSM--- 200

Query: 306 KRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLA 365
                    E G          N     + Y   +      + +    + +S  V   ++
Sbjct: 201 ---------EQG----------NCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGIS 241

Query: 366 DAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHV- 422
              F +T+ +  +C  L  +K   T  +        P    DV     ++  L + G + 
Sbjct: 242 PDIFTYTSLIHSLCN-LCEWKHVTTLLNQMINSKIMP----DVVIFSTVVDALCKEGKIT 296

Query: 423 ---ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF----HDD-------- 467
              ++VD +I +    G+     T   ++D + +  + D A+K F    H+         
Sbjct: 297 EAHDVVDMMIIR----GVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISY 352

Query: 468 RTLCGPISKFKLM-------------------LLYSSLLRTLTKCKRDFDAINVLEEMIF 508
            TL     K + M                   + Y++L+       R  DAI +  EM+ 
Sbjct: 353 NTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHX-CHVGRLQDAIALFHEMVA 411

Query: 509 SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY----- 563
            G +PD+ T+  L+ +   +        L   +  + ++PD  ++ ++I   C+      
Sbjct: 412 HGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEA 471

Query: 564 -------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                  LS+  L P+  T  ++   L + G   EA
Sbjct: 472 ARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEA 507


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 1/150 (0%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  +S SGD        +E +++       +YN+++      G+  +AV+   ++ + G
Sbjct: 410 LITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVG 469

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             PN  TY  +I+   + G + SA E+ + +   R +     Y + ++ F  + + DEA 
Sbjct: 470 LEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEAN 529

Query: 263 SLLNEMRDDGKFP-GRAMRVALERMQEMGF 291
            LLNEM D    P G       E M E G+
Sbjct: 530 DLLNEMLDKCLVPNGITYETIKEGMMEKGY 559



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 12/134 (8%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +++Y+ L+    +  +  DA+ V E M   GI P+V T++ L+  F+  GD +    L  
Sbjct: 369 VVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLD 428

Query: 540 MVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEG 587
            +++ G+E D   + VLI A C              +S   L P+  T   + +    +G
Sbjct: 429 EMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKG 488

Query: 588 RRKEAAAVEERCEK 601
             K A  +  R EK
Sbjct: 489 NIKSAYEIRTRMEK 502



 Score = 46.6 bits (109), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 72/189 (38%), Gaps = 35/189 (18%)

Query: 119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV 178
           + +  L+ ++  +     +V F  L+  Y  + +    +  + E +Q+    S  +YN +
Sbjct: 246 YHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSL 305

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRT----------------------------- 209
           +S     GK  E V+   ++ D G  PN  T                             
Sbjct: 306 ISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNV 365

Query: 210 ------YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
                 YT++I+    LGK++ A+ V  A+    I      Y  L+ GF     +  A  
Sbjct: 366 EPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASG 425

Query: 264 LLNEMRDDG 272
           LL+EM++ G
Sbjct: 426 LLDEMKEKG 434



 Score = 43.1 bits (100), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 65/141 (46%), Gaps = 4/141 (2%)

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL 479
           G++  VD L+ ++   G+     T  ++I+ Y  +    AA++ F + +      S    
Sbjct: 243 GNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAAS---- 298

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y+SL+  L    +  + + ++EEM   G+ P+  TF  ++  F  +G          
Sbjct: 299 VVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWID 358

Query: 540 MVRQNGVEPDAYMFKVLIQAY 560
            + +  VEPD  ++ +LI  Y
Sbjct: 359 GMTERNVEPDVVIYTILIDGY 379


>gi|147778634|emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
          Length = 1494

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 20/215 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G+  D      +L   AR G+V+ V  +   +   G      T   II  YG   + D A
Sbjct: 391 GFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLA 450

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
            +  + D  L G   +    + Y+ L+ +L K     +A  V+ EM+ + + P ++TFS 
Sbjct: 451 FQ-LYSDMKLSG---RSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNAXVKPTLRTFSA 506

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM---------- 570
           L+  +A  G     ++ F  + ++G++PD   + V++    ++  +   M          
Sbjct: 507 LICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHS 566

Query: 571 --PDAATKELLKKSLWKEGRRKEAAAV----EERC 599
             PD A  E++ + L KE R ++   V    EE C
Sbjct: 567 FKPDHALYEVMLRVLGKENREEDVHKVVKDMEELC 601



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 100/215 (46%), Gaps = 8/215 (3%)

Query: 67  LDPFIVTH-ALRSAPNADSALSIMEALKS-NPNFSHNQS----TLHALATVLAKSQRNHE 120
           + P I+T+  L SA + +S L   EA+K  N   +H       T +A+ +V  +   + E
Sbjct: 322 IQPDIITYNTLISACSRESNLE--EAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSRE 379

Query: 121 LKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS 180
              L  D+ S  FL  +V + +L+  ++  G+++ V     +  +        +YN ++ 
Sbjct: 380 AGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIH 439

Query: 181 VYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR 240
           +Y K G++  A + +  +   G  P++ TYTV+I+ L     +  A EV S +    +K 
Sbjct: 440 MYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNAXVKP 499

Query: 241 TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           T + +  L+ G+    +  EA+   + M   G  P
Sbjct: 500 TLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKP 534



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 100/476 (21%), Positives = 191/476 (40%), Gaps = 50/476 (10%)

Query: 97   NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQ---WYSTSGDL 153
            +F  + +    +  VL K  R  ++  ++ D+     +N  V    L++   +   +  L
Sbjct: 566  SFKPDHALYEVMLRVLGKENREEDVHKVVKDMEELCGMNSQVICSILVKGECFDHAANML 625

Query: 154  ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
             L +S   E   R  LLS      ++  Y  +G++ EA E    + +  +  +      +
Sbjct: 626  RLAISQGCEL-DRENLLS------ILGSYGSSGRHLEARELLDFLREHSSGSHQLINEAL 678

Query: 214  IEHLVNLGKLDSAL-EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
            I  L    +L  AL E   A        +   Y  L+      E F EA  + ++MR  G
Sbjct: 679  IIMLCKAHQLGDALREYGKARDFGLFCGSFTMYESLLLCCEENELFAEASQIFSDMRFYG 738

Query: 273  KFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSG 331
              P   + R  +    +MGF + A+      L D+  +    ++D S          ++G
Sbjct: 739  VEPSDHLYRSMVVTYCKMGFPETAH-----YLIDQAEEKGLLFDDVS---------IHTG 784

Query: 332  VRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWH 391
            V  AYG +LK W   ++L  +L +            K     R V   L H  +    + 
Sbjct: 785  VIEAYG-KLKLWQKAESLVGSLRQ------------KCTMVDRKVWNALIHAYAASGCYE 831

Query: 392  -----FFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
                 F   +   P  T D  ++  ++  L   G ++ +  +I +L+  G ++  S+I L
Sbjct: 832  RARAIFNTMMRDGPSPTVD--SVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITL 889

Query: 447  IIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
            ++D +  +       K +   +        F  M LY  ++  L K KR  D   ++ EM
Sbjct: 890  MLDAFAHAGNIFEVKKIYQGMKA----AGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEM 945

Query: 507  IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
              +   PD+  ++ ++  +   GD K   +++ ++++ G++PD   +  LI  YC+
Sbjct: 946  EVAXFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCR 1001



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 79/185 (42%), Gaps = 18/185 (9%)

Query: 424 LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRT-LCGPISKFKLMLL 482
           L   L+ ++R  G++    T   +I         + A+K ++D     C P      +  
Sbjct: 309 LAIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPD-----LWT 363

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++++    +C    +A  + +++   G +PD  T++ L+Y FA +G+   V+++   + 
Sbjct: 364 YNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMV 423

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
           + G   D   +  +I  Y K             +  S   PDA T  +L  SL K    K
Sbjct: 424 KMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIK 483

Query: 591 EAAAV 595
           EAA V
Sbjct: 484 EAAEV 488



 Score = 47.0 bits (110), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 107/498 (21%), Positives = 182/498 (36%), Gaps = 36/498 (7%)

Query: 85  ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
           AL + E L     +S N   L  + +VL K+ +      +     ++    V V +  +M
Sbjct: 203 ALEVYEWLNLRHWYSPNARMLATILSVLGKANQEALAVEIFARAEAAXGNTVQV-YNAMM 261

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE--AVETFRQVIDEG 202
             Y+ +G    V    +  R R       S+N +++   K+G      A+E   +V   G
Sbjct: 262 GVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSG 321

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY--LILVEGFVGVERFDE 260
             P+  TY  +I        L+ A++V++ +   R +     Y  +I V G  G+ R  E
Sbjct: 322 IQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSR--E 379

Query: 261 AKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREML-----PDKRIKNVRYY 314
           A  L  ++   G  P        L      G +    E   +M+      D+   N   +
Sbjct: 380 AGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIH 439

Query: 315 EDGSDDDED-----ENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF 369
             G     D      +D   SG R    V     +D    AN + E + EV+S + +A  
Sbjct: 440 MYGKRGQHDLAFQLYSDMKLSG-RSPDAVTYTVLIDSLGKANMIKE-AAEVMSEMLNAXV 497

Query: 370 VWTTR----LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELV 425
             T R    L+C   +  K  E    F C +  + G   D  A   ML IL R       
Sbjct: 498 KPTLRTFSALICGYAKAGKRVEAEETFDCML--RSGIKPDHLAYSVMLDILLRFNESGKA 555

Query: 426 DRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSS 485
            +L  ++     +   +   +++   G   + +   K   D   LCG  S+    +L   
Sbjct: 556 MKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDMEELCGMNSQVICSILVKG 615

Query: 486 LLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544
                 +C   FD A N+L   I  G   D +    ++  +   G     ++L   +R++
Sbjct: 616 ------EC---FDHAANMLRLAISQGCELDRENLLSILGSYGSSGRHLEARELLDFLREH 666

Query: 545 GVEPDAYMFKVLIQAYCK 562
                  + + LI   CK
Sbjct: 667 SSGSHQLINEALIIMLCK 684



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 40/204 (19%), Positives = 86/204 (42%), Gaps = 7/204 (3%)

Query: 75   ALRSAPNADSALSIMEALKSNPNFSHNQSTLH---ALATVLAKSQRNHELKTLIGDISSS 131
            A   A N      I + +K+   F     T+H    +  +LAK +R  +++ ++ ++  +
Sbjct: 893  AFAHAGNIFEVKKIYQGMKAAGYFP----TMHLYRIMIGLLAKGKRVRDVEAMVSEMEVA 948

Query: 132  KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
             F      + ++++ Y+  GD +     +   ++       ++YN ++ +Y +  +  E 
Sbjct: 949  XFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEG 1008

Query: 192  VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
            +    ++   G  P   TY  +I     L  ++ A E+F  L     K     Y I+++ 
Sbjct: 1009 LSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKM 1068

Query: 252  FVGVERFDEAKSLLNEMRDDGKFP 275
            F       +A+ LL  M++ G  P
Sbjct: 1069 FRNSGNHSKAEKLLGVMKEAGVEP 1092


>gi|242058007|ref|XP_002458149.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
 gi|241930124|gb|EES03269.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
          Length = 795

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 82/212 (38%), Gaps = 1/212 (0%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T H+L     +     E   L  ++    F    V +  LM+ Y      +   +  NE 
Sbjct: 435 TCHSLLLGYCEKGCMDEALKLYSEMPGKGFPPNEVTYTTLMKGYIKKKAFDKAYALLNEM 494

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
            Q        +YNI+++      +  E  E  ++ + EG +P + TY  +I   V  G +
Sbjct: 495 HQNGVSCGEYTYNILINGLCMVDRVCEVDEMLKRFVSEGFVPTTMTYNSIINGFVKAGMM 554

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
            SAL ++  +    I      Y   ++G+      D A  LL  MR +G  P  A   A 
Sbjct: 555 GSALAMYRQMCEKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYMRCNGIHPDIAAYNAF 614

Query: 284 ERM-QEMGFIQGANEFLREMLPDKRIKNVRYY 314
             M  + G +  A  FL  +L D    NV  Y
Sbjct: 615 INMFCKQGNMSHALHFLVLLLKDGLTPNVTVY 646



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 102/480 (21%), Positives = 172/480 (35%), Gaps = 69/480 (14%)

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           L+ ++E R +      + Y++VM        + +AV  F ++   G  P+ R Y + I  
Sbjct: 173 LTLFDEMRCKGYYADAKMYDVVMRACVVGRMHGDAVRLFDEMAGAGVKPDERVYAITITG 232

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
           L  L   D A++V   +    +K     Y  +V+  V V R DEA  L ++M       G
Sbjct: 233 LCKLRDADRAVQVLGKMREAGLKPRDFTYNSVVDVLVKVGRMDEALRLKDQML---LATG 289

Query: 277 RAMRVALERMQEMGF-----IQGANEFLREMLPDKRI-KNVRYYE--DGSDDDEDENDDN 328
           + M V L      G+     I  A +   E + D     NV Y     G  D E   D+ 
Sbjct: 290 KKMDVFLATTLMQGYCLHGEIGKALDLFDEAVRDGVTPTNVTYTVLIKGC-DAEGMTDET 348

Query: 329 NSGVR--IAYG---------------VQLKPWLDPKALAN-TLDEWSPEVVSLLADAKFV 370
               R  I  G               ++ K W D  AL +  +D   P+V        F 
Sbjct: 349 YKLCRQMIEQGLLPSTYEFNLVIKGLLRNKQWEDAIALFDLVVDTGVPDV--------FT 400

Query: 371 WTTRLVCKVLRHFKSPETA--WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRL 428
           +   L+  + +H K  E    W        +P     +     +L      G ++   +L
Sbjct: 401 YGC-LIHWLSKHHKVHEAVNLWDKMKEAGVKP----SIVTCHSLLLGYCEKGCMDEALKL 455

Query: 429 IAKLRSDGMRLPFSTIRLIIDFYGISKK----ADAALKAFHDDRTLCGPISKFKLMLLYS 484
            +++   G      T   ++  Y I KK    A A L   H +   CG  +       Y+
Sbjct: 456 YSEMPGKGFPPNEVTYTTLMKGY-IKKKAFDKAYALLNEMHQNGVSCGEYT-------YN 507

Query: 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544
            L+  L    R  +   +L+  +  G VP   T++ ++  F   G       ++  + + 
Sbjct: 508 ILINGLCMVDRVCEVDEMLKRFVSEGFVPTTMTYNSIINGFVKAGMMGSALAMYRQMCEK 567

Query: 545 GVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           G+ P+   +   I  YC+            Y+  + + PD A          K+G    A
Sbjct: 568 GITPNIVTYTSFIDGYCRTNCCDLAVKLLIYMRCNGIHPDIAAYNAFINMFCKQGNMSHA 627



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/133 (20%), Positives = 58/133 (43%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+ W S    +   ++ W++ ++     S  + + ++  Y + G   EA++ + ++  +G
Sbjct: 404 LIHWLSKHHKVHEAVNLWDKMKEAGVKPSIVTCHSLLLGYCEKGCMDEALKLYSEMPGKG 463

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             PN  TYT +++  +     D A  + + +    +      Y IL+ G   V+R  E  
Sbjct: 464 FPPNEVTYTTLMKGYIKKKAFDKAYALLNEMHQNGVSCGEYTYNILINGLCMVDRVCEVD 523

Query: 263 SLLNEMRDDGKFP 275
            +L     +G  P
Sbjct: 524 EMLKRFVSEGFVP 536



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 65/166 (39%), Gaps = 1/166 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V + + +  Y  +   +L +      R         +YN  ++++ K G    A+     
Sbjct: 574 VTYTSFIDGYCRTNCCDLAVKLLIYMRCNGIHPDIAAYNAFINMFCKQGNMSHALHFLVL 633

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++ +G  PN   Y   +    NL  +  A + + ++   RI   ++ Y  L++GF  V  
Sbjct: 634 LLKDGLTPNVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRIAADTEIYTTLIDGFSKVGN 693

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVALER-MQEMGFIQGANEFLREM 302
              A  L +EM  +   P      AL   +   G I GA   L +M
Sbjct: 694 VAFALELYSEMLANHNIPDDKTFTALTHGLCRSGDIDGAKRLLDDM 739



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/104 (22%), Positives = 48/104 (46%)

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
           TE Y  ++  ++K G    A+E + +++    IP+ +T+T +   L   G +D A  +  
Sbjct: 678 TEIYTTLIDGFSKVGNVAFALELYSEMLANHNIPDDKTFTALTHGLCRSGDIDGAKRLLD 737

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            +  + +   +  Y +L+   +   +  EA  L ++M   G  P
Sbjct: 738 DMTRLDVCPNTVTYNMLINAHIRDGKLQEAFQLHDKMLSSGVVP 781


>gi|297823043|ref|XP_002879404.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325243|gb|EFH55663.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 87/190 (45%), Gaps = 1/190 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A  I + ++    F  +  T + +A+   + +R  E K  +  +        +V++ N
Sbjct: 397 DEASMIYDVMEK-KGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVRLSTVSYTN 455

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  Y   G++E     + E   +    +  +YN+++  Y K GK  EA + +  +   G
Sbjct: 456 LIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYNVMIYAYCKQGKVKEARKLWANMKANG 515

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+S TYT +I        +D A+ +FS + L  + + S  Y +++ G     + DEA 
Sbjct: 516 MDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAF 575

Query: 263 SLLNEMRDDG 272
            L +E++  G
Sbjct: 576 GLYDEIKRKG 585



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 70/169 (41%), Gaps = 18/169 (10%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII-------DFYGI 453
           G    VY+L  ++  L R G VE   +LI +    G++    T   II       DF G+
Sbjct: 200 GVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSGKGIKPEAYTYNTIINAYLKHRDFSGV 259

Query: 454 SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP 513
            K     LK    D  +   ++       Y+ L+    K  +  D   + +EM   GI  
Sbjct: 260 EK----ILKVMKKDGVVYNKVT-------YTLLIELSVKNGKMNDVEKLFDEMRERGIES 308

Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           D+  ++ L+     +G+ K    LF  + + G+ P ++ +  LI   CK
Sbjct: 309 DIHVYTSLISWNCRKGNIKRAFLLFDELTEKGLLPSSHTYGALIDGVCK 357



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 43/79 (54%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++L+    K     +A  +  EM    + P+  T++ ++Y +  QG  K  +KL++ ++
Sbjct: 453 YTNLIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYNVMIYAYCKQGKVKEARKLWANMK 512

Query: 543 QNGVEPDAYMFKVLIQAYC 561
            NG++PD+Y +  LI   C
Sbjct: 513 ANGMDPDSYTYTSLIHGEC 531



 Score = 40.0 bits (92), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 56/256 (21%), Positives = 108/256 (42%), Gaps = 9/256 (3%)

Query: 25  VRAPFTNKLALYLRRAQLIDSIRLAVRSNSSN---SLSSLLNDRLLDPFIVTHALRS--A 79
           V+ P  ++ A ++ + Q   S+   + SN +    S  SL     +D F       S   
Sbjct: 16  VKQPEESRRAWWIGKLQSNPSLLFNLNSNVTRLVLSDPSLATQSCIDFFKFLREFESNLK 75

Query: 80  PNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI--GDISSSKFLNVS 137
           P+  + +++   L SN  FS  +  L+++       +    L + +   DIS  KF    
Sbjct: 76  PDLTAVVTLSHRLYSNRRFSEMRLLLNSVVNDGFYERPVEGLGSAMVDCDISEEKFEFWE 135

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE-AVETFR 196
             F  + + Y  +G  E  L  + +Y  +  L   E   IV  V AK  +  +  +E FR
Sbjct: 136 KFFDLVFRVYVDNGMFEEGLRVF-DYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEFFR 194

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           +++D G      + T+++E L   G+++ + ++        IK  +  Y  ++  ++   
Sbjct: 195 RMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSGKGIKPEAYTYNTIINAYLKHR 254

Query: 257 RFDEAKSLLNEMRDDG 272
            F   + +L  M+ DG
Sbjct: 255 DFSGVEKILKVMKKDG 270



 Score = 40.0 bits (92), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 28/135 (20%), Positives = 61/135 (45%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L++    +G +  V   ++E R+R        Y  ++S   + G    A   F +
Sbjct: 276 VTYTLLIELSVKNGKMNDVEKLFDEMRERGIESDIHVYTSLISWNCRKGNIKRAFLLFDE 335

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + ++G +P+S TY  +I+ +  +G++ +A  + + +    +  T   +  L+ G+     
Sbjct: 336 LTEKGLLPSSHTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLINGYCRKGM 395

Query: 258 FDEAKSLLNEMRDDG 272
            DEA  + + M   G
Sbjct: 396 IDEASMIYDVMEKKG 410



 Score = 38.9 bits (89), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 36/172 (20%), Positives = 71/172 (41%), Gaps = 3/172 (1%)

Query: 104 TLHALATVLAKSQRNHEL---KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           T+++L  V+    R  E+   K LI + S       +  +  ++  Y    D   V    
Sbjct: 204 TVYSLTIVVEGLCRRGEVEKSKKLIKEFSGKGIKPEAYTYNTIINAYLKHRDFSGVEKIL 263

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
              ++   + +  +Y +++ +  K GK  +  + F ++ + G   +   YT +I      
Sbjct: 264 KVMKKDGVVYNKVTYTLLIELSVKNGKMNDVEKLFDEMRERGIESDIHVYTSLISWNCRK 323

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           G +  A  +F  L    +  +S  Y  L++G   V     A+ L+NEM+  G
Sbjct: 324 GNIKRAFLLFDELTEKGLLPSSHTYGALIDGVCKVGEMGAAEILMNEMQSKG 375


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 97/450 (21%), Positives = 168/450 (37%), Gaps = 74/450 (16%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  +  +G +E     + E R      +  +Y  ++  Y K  +  +A + F +++D G
Sbjct: 329 LIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAG 388

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL---------------- 246
             PN  TY  +++ L   G +  A EV++ L        S  Y                 
Sbjct: 389 CRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYG 448

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPD 305
            LV+G     + D A  LL+ M   G  P   +  AL +   + G I  A E   +M   
Sbjct: 449 ALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKC 508

Query: 306 KRIKNV--------RYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTL-DEW 356
             + +V        R ++DG  D                       L  K L+  L D  
Sbjct: 509 GYLPSVHTYTSLIDRMFKDGRLD-----------------------LAMKVLSQMLKDSC 545

Query: 357 SPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTIL 416
           +P VV+  A          +C++       E A      +  + G + +V     ++  L
Sbjct: 546 TPNVVTYTA------MIDGLCRI----GESEKALKLLSLME-EKGCSPNVVTYTALIDGL 594

Query: 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK 476
            + G ++L   L  ++   G    + T R++I+    +   D A       R L G + +
Sbjct: 595 GKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKA-------RLLLGEMKQ 647

Query: 477 F---KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
               K +  Y   ++  +  K    ++ +LEEM   G VP    +  L+  F+  G  +I
Sbjct: 648 TYWPKYLQGYRCAIQGFS--KSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEI 705

Query: 534 VQKLFS--MVRQNGVEPDAYMFKVLIQAYC 561
             +L    M   + V+ D  M+  LIQA C
Sbjct: 706 AMELHKEMMEVPSSVKTDNDMYASLIQALC 735



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 75/379 (19%), Positives = 146/379 (38%), Gaps = 51/379 (13%)

Query: 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
              GK  +A +  ++++ +G +P++ TY+ +I  L +  K++ A  +F  + ++ +    
Sbjct: 264 CGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDV 323

Query: 243 KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLRE 301
             Y IL++ F      ++A+ L  EMR  G  P      AL     +   +  AN+    
Sbjct: 324 YTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHR 383

Query: 302 MLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEV- 360
           M+               D     ND       + YG  +        ++   + ++  + 
Sbjct: 384 MV---------------DAGCRPND-------VTYGALVDGLCKAGNISKAFEVYAKLIG 421

Query: 361 VSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHG 420
            S  AD+ F +         RH  +P                  +V     ++  L +  
Sbjct: 422 TSDSADSDFYFPCE-----DRHTLAP------------------NVVTYGALVDGLCKAH 458

Query: 421 HVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM 480
            V+    L+  + S G          +ID +  + K D+A + F    T CG +      
Sbjct: 459 KVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFL-QMTKCGYLPSVH-- 515

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
             Y+SL+  + K  R   A+ VL +M+     P+V T++ ++      G+ +   KL S+
Sbjct: 516 -TYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSL 574

Query: 541 VRQNGVEPDAYMFKVLIQA 559
           + + G  P+   +  LI  
Sbjct: 575 MEEKGCSPNVVTYTALIDG 593



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 83/203 (40%), Gaps = 1/203 (0%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T  AL   L K+ +      L+  + SS      + +  L+  +  +G ++     +
Sbjct: 443 NVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVF 502

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            +  +   L S  +Y  ++    K G+   A++   Q++ +   PN  TYT MI+ L  +
Sbjct: 503 LQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRI 562

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM- 279
           G+ + AL++ S +           Y  L++G     + D +  L  +M   G  P     
Sbjct: 563 GESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTY 622

Query: 280 RVALERMQEMGFIQGANEFLREM 302
           RV +  +   G +  A   L EM
Sbjct: 623 RVLINHLCAAGLLDKARLLLGEM 645



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 92/208 (44%), Gaps = 6/208 (2%)

Query: 67  LDPFIVTHA-----LRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHEL 121
           L P +VT+      L  A   D A  +++A+ S+     N     AL     K+ +    
Sbjct: 440 LAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSS-GCEPNHIVYDALIDGFCKAGKIDSA 498

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
           + +   ++   +L     + +L+      G L+L +   ++  + +   +  +Y  ++  
Sbjct: 499 QEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDG 558

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
             + G++ +A++    + ++G  PN  TYT +I+ L   GK+D +L++F+ +        
Sbjct: 559 LCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPN 618

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMR 269
              Y +L+         D+A+ LL EM+
Sbjct: 619 YVTYRVLINHLCAAGLLDKARLLLGEMK 646



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 497 FD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV 555
           FD A  +++EM+  G VPD  T+S ++         +    LF  ++  GV PD Y + +
Sbjct: 269 FDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTI 328

Query: 556 LIQAYCK 562
           LI ++CK
Sbjct: 329 LIDSFCK 335



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 12/125 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS ++  L    +   A  + +EM   G+ PDV T++ L+  F   G  +  Q LF  +R
Sbjct: 291 YSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMR 350

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
             G  P    +  LI AY K             + ++   P+  T   L   L K G   
Sbjct: 351 SVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNIS 410

Query: 591 EAAAV 595
           +A  V
Sbjct: 411 KAFEV 415


>gi|413936133|gb|AFW70684.1| hypothetical protein ZEAMMB73_229858 [Zea mays]
          Length = 375

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 63/111 (56%), Gaps = 1/111 (0%)

Query: 165 QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
           Q  +L    ++N ++S + + G   +A+E F+Q+ ++G  PNS TY+ +I  LV   K++
Sbjct: 178 QNDRLRDNSTFNTIISFWCQKGLILQALEVFKQMPEKGCNPNSTTYSTIIGGLVKASKME 237

Query: 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            ALE+ + +   +   T K YL+L +     ++ +E   ++++++D G  P
Sbjct: 238 QALELLNEMA-NKGFNTDKMYLVLTKSLNKEDKIEEVVQVVHKLQDSGISP 287



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 1/115 (0%)

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
           EG  PN+ TY V+I+ +   G +D A E+ ++LP    K  +  Y  +++GF  +ER+ +
Sbjct: 4   EGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRSCKPNTVNYNTVLKGFCSIERWVD 63

Query: 261 AKSLLNEMRDDGKFPGRA-MRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
           A  +L+E+  +   P  A + V +  +   G +Q    +L +M       NV  Y
Sbjct: 64  ANEILDEVVSENCPPNEATLNVTINTLCRKGLLQKVTRYLEKMSKHGCTTNVVTY 118



 Score = 42.7 bits (99), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 72/173 (41%), Gaps = 3/173 (1%)

Query: 63  NDRLLDPFIVTHALRSAPNADSALSIMEALKSNP--NFSHNQSTLHALATVLAKSQRNHE 120
           NDRL D       +         L  +E  K  P    + N +T   +   L K+ +  +
Sbjct: 179 NDRLRDNSTFNTIISFWCQKGLILQALEVFKQMPEKGCNPNSTTYSTIIGGLVKASKMEQ 238

Query: 121 LKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS 180
              L+ ++++  F N    ++ L +  +    +E V+   ++ +       T  YN V+ 
Sbjct: 239 ALELLNEMANKGF-NTDKMYLVLTKSLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLL 297

Query: 181 VYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
              + GK   A++    ++  G +P+  TY ++IE L   G L  A E+ S L
Sbjct: 298 GLCRNGKTNYAIDVLADMVSCGCMPDESTYIILIEGLFYEGYLKEARELLSRL 350



 Score = 40.0 bits (92), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 44/99 (44%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN V+       +  +A E   ++     + ++ T+  +I      G +  ALEVF  +
Sbjct: 152 TYNTVLKGLCSADRWEDAEELMIKMSQNDRLRDNSTFNTIISFWCQKGLILQALEVFKQM 211

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           P       S  Y  ++ G V   + ++A  LLNEM + G
Sbjct: 212 PEKGCNPNSTTYSTIIGGLVKASKMEQALELLNEMANKG 250



 Score = 40.0 bits (92), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 2/134 (1%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           + N+ ++   + G   +      ++   G   N  TY  +I  L   G +DSALE+ S +
Sbjct: 82  TLNVTINTLCRKGLLQKVTRYLEKMSKHGCTTNVVTYNAIIGGLCEQGNVDSALELLSNM 141

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF-PGRAMRVALERMQEMGFI 292
                K     Y  +++G    +R+++A+ L+ +M  + +          +    + G I
Sbjct: 142 QSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLRDNSTFNTIISFWCQKGLI 201

Query: 293 QGANEFLREMLPDK 306
             A E  ++M P+K
Sbjct: 202 LQALEVFKQM-PEK 214



 Score = 39.3 bits (90), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 82/207 (39%), Gaps = 23/207 (11%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D+     +L  L      E  + L+ K+  +      ST   II F+        A
Sbjct: 145 GCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLRDNSTFNTIISFWCQKGLILQA 204

Query: 461 LKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           L+ F       C P S       YS+++  L K  +   A+ +L EM   G   D     
Sbjct: 205 LEVFKQMPEKGCNPNST-----TYSTIIGGLVKASKMEQALELLNEMANKGFNTDKMY-- 257

Query: 520 GLMYHFALQGDEKI--VQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LS 565
            L+   +L  ++KI  V ++   ++ +G+ P   ++  ++   C+             + 
Sbjct: 258 -LVLTKSLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTNYAIDVLADMV 316

Query: 566 NSNLMPDAATKELLKKSLWKEGRRKEA 592
           +   MPD +T  +L + L+ EG  KEA
Sbjct: 317 SCGCMPDESTYIILIEGLFYEGYLKEA 343


>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
 gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
          Length = 603

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 103/253 (40%), Gaps = 42/253 (16%)

Query: 347 KALANTLDEWSPEVVSLLADAKFVWTTRL----VCKVLRHFKSPETAWHFFCWVAYQPGY 402
           ++L   L++ + +V +LL  +    +T+L       VL   +    A  F+ W A +PG+
Sbjct: 33  ESLLAILEDKASDVQALLERSHAAVSTKLSRDTFGGVLGRLRCTCNALGFYHWAATRPGF 92

Query: 403 THDVYALEKMLTILARHGHV--------------------------------ELVDRLIA 430
           +H ++    +L  L R GH+                                E+V+ L+ 
Sbjct: 93  SHTLFTRNSLLLALVRGGHLSDALGFFQSSISEPNVSSFNILLRGFAARDDFEVVNALLR 152

Query: 431 KLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRT 489
           +++S G+    +T  +I+      +  D A+  F+      C P      +  Y+ L+  
Sbjct: 153 EMKSRGITSNGATHGVILSALCARRDLDKAVSYFNSVSPNKCEPT-----LFTYTVLVDG 207

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
           L K  +   A +V EEMI  G  PD+  +S L+   +  G     +KL  ++   G  P 
Sbjct: 208 LCKAHKVERACDVFEEMIRKGYKPDIIAYSSLIDGLSKAGRVDEARKLVDLMVARGPPPT 267

Query: 550 AYMFKVLIQAYCK 562
           A  +  ++   CK
Sbjct: 268 AVAYTSIVAGLCK 280



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 1/192 (0%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L K  R  E    I ++   +       +  ++  Y   G +E   +   E   R     
Sbjct: 278 LCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEMADRDCAPD 337

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
           T SY + +      G+  EA + F  ++++G  P+  TY ++I++    G + +A  V  
Sbjct: 338 TISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLR 397

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMG 290
            +    +K     Y ++++GFV   R +EA  L   +  DG  P        +  + ++ 
Sbjct: 398 LMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLK 457

Query: 291 FIQGANEFLREM 302
            +  A E LREM
Sbjct: 458 KMDEALELLREM 469



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 96/221 (43%), Gaps = 6/221 (2%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS-KFLNVSVNFMN 142
           +AL       + P FSH   T ++L   L    R   L   +G   SS    NVS +F  
Sbjct: 78  NALGFYHWAATRPGFSHTLFTRNSLLLALV---RGGHLSDALGFFQSSISEPNVS-SFNI 133

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L++ ++   D E+V +   E + R    +  ++ +++S         +AV  F  V    
Sbjct: 134 LLRGFAARDDFEVVNALLREMKSRGITSNGATHGVILSALCARRDLDKAVSYFNSVSPNK 193

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P   TYTV+++ L    K++ A +VF  +     K     Y  L++G     R DEA+
Sbjct: 194 CEPTLFTYTVLVDGLCKAHKVERACDVFEEMIRKGYKPDIIAYSSLIDGLSKAGRVDEAR 253

Query: 263 SLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREM 302
            L++ M   G  P   A    +  + + G IQ A + ++EM
Sbjct: 254 KLVDLMVARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEM 294



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 3/174 (1%)

Query: 114 KSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLL--S 171
           KS R  E   L   I     L  +V +  ++        ++  L    E ++R + L  S
Sbjct: 420 KSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPS 479

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
             +Y++++    K G    A +   ++ID G IP+  TYT +I+ L   GK+  A+E+  
Sbjct: 480 IVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLE 539

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER 285
            +    I      Y  LV+  +     D A  LL EM  +G  P      A+E+
Sbjct: 540 EMLKAGIFPDDHTYGTLVQ-ILCRSDVDAAWDLLQEMMRNGHTPNEFTFKAVEK 592



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 44/83 (53%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ YS ++  L K   +  A ++L EMI +G++PD  T++ L+   A  G      +L  
Sbjct: 480 IVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLE 539

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK 562
            + + G+ PD + +  L+Q  C+
Sbjct: 540 EMLKAGIFPDDHTYGTLVQILCR 562



 Score = 43.1 bits (100), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 2/97 (2%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAI-PNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           +Y I++  + K G    A    R ++D+ A+ PN   YT++++  V   +L+ ALE++  
Sbjct: 375 TYGIIIDNFCKEGSMAAATHVLR-LMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQR 433

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
           +    I  ++  Y  ++     +++ DEA  LL EM+
Sbjct: 434 ILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQ 470



 Score = 40.4 bits (93), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 22/102 (21%), Positives = 51/102 (50%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y+ ++   +K G+  EA +    ++  G  P +  YT ++  L   G++  A++    +
Sbjct: 235 AYSSLIDGLSKAGRVDEARKLVDLMVARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEM 294

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              R++     Y  +V G++G+ + ++A +++ EM D    P
Sbjct: 295 RRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEMADRDCAP 336



 Score = 39.7 bits (91), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 74/170 (43%), Gaps = 12/170 (7%)

Query: 396 VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY---G 452
           VA  P  T   Y    ++  L + G ++   + I ++R   +R    T   I+  Y   G
Sbjct: 260 VARGPPPTAVAYT--SIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMG 317

Query: 453 ISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV 512
             +KA A ++   D    C P +     + Y+  +  L    R  +A  V E M+  G  
Sbjct: 318 KVEKAFAVMEEMADRD--CAPDT-----ISYTMFIEALYSIGRREEAEKVFETMVEKGCK 370

Query: 513 PDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           PD+ T+  ++ +F  +G       +  ++ +  V+P+ Y++ +++  + K
Sbjct: 371 PDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVK 420


>gi|15219388|ref|NP_178067.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75200795|sp|Q9SAK0.1|PP132_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g79490, mitochondrial; AltName: Full=Protein EMBRYO
           DEFECTIVE 2217; Flags: Precursor
 gi|4835759|gb|AAD30226.1|AC007202_8 T8K14.9 [Arabidopsis thaliana]
 gi|332198129|gb|AEE36250.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 836

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 102/215 (47%), Gaps = 3/215 (1%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDI--S 129
           +T +L+     D+ALS+    K  P +  +      L   L + +    +++L  ++   
Sbjct: 175 ITQSLKIVKEVDAALSLFRWAKKQPWYLPSDECYVVLFDGLNQGRDFVGIQSLFEEMVQD 234

Query: 130 SSKFLNVSVNFMN-LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN 188
           SS   ++S N  N ++Q+ + +  LE+    + + ++    + T++YN +M ++   G  
Sbjct: 235 SSSHGDLSFNAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLP 294

Query: 189 FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
           ++A E +  +    ++ +  TY ++I  L   G+LD+A ++F  +   +++ +   +  L
Sbjct: 295 YKAFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSL 354

Query: 249 VEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
           V+      R D +  +  EM+  G  P   M V+L
Sbjct: 355 VDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSL 389



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 99/216 (45%), Gaps = 10/216 (4%)

Query: 63  NDRLLDPF---IVTHALRSAPNADSALSIMEALKSN---PNFSHNQSTLHALATVLAKSQ 116
            D LLD     ++  +L  +   D+A  + + +K     P+FS       +L   + K+ 
Sbjct: 307 TDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFS----VFSSLVDSMGKAG 362

Query: 117 RNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYN 176
           R      +  ++        +  F++L+  Y+ +G L+  L  W+E ++     +   Y 
Sbjct: 363 RLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYT 422

Query: 177 IVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM 236
           +++  +AK+GK   A+  F+ +   G +P   TY+ ++E     G++DSA+++++++   
Sbjct: 423 MIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNA 482

Query: 237 RIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
            ++     Y+ L+         D A  +L EM+  G
Sbjct: 483 GLRPGLSSYISLLTLLANKRLVDVAGKILLEMKAMG 518



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 76/183 (41%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           + ST   +   LAKS R      L   +   K       F +L+     +G L+  +  +
Sbjct: 312 DGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVY 371

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            E +      S   +  ++  YAK GK   A+  + ++   G  PN   YT++IE     
Sbjct: 372 MEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKS 431

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR 280
           GKL+ A+ VF  +       T   Y  L+E   G  + D A  + N M + G  PG +  
Sbjct: 432 GKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPGLSSY 491

Query: 281 VAL 283
           ++L
Sbjct: 492 ISL 494



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 26/137 (18%), Positives = 65/137 (47%)

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
            + NLM  +   G        +    +   LL   +Y +++   AK+G+   A + F+Q+
Sbjct: 280 TYNNLMMLFLNKGLPYKAFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQM 339

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
            +    P+   ++ +++ +   G+LD++++V+  +     + ++  ++ L++ +    + 
Sbjct: 340 KERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKL 399

Query: 259 DEAKSLLNEMRDDGKFP 275
           D A  L +EM+  G  P
Sbjct: 400 DTALRLWDEMKKSGFRP 416



 Score = 43.5 bits (101), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 70/351 (19%), Positives = 123/351 (35%), Gaps = 65/351 (18%)

Query: 309 KNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLD-----EWSPEVVSL 363
           K +R  E G DD             +  G   KP+++  ++A  ++     +W PE+ + 
Sbjct: 115 KGIRSVEPGLDD------------HVMVGGLKKPYMNASSVAKIVEVVQRWKWGPELETQ 162

Query: 364 LADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH---- 419
           L   +FV     + + L+  K  + A   F W   QP Y         +   L +     
Sbjct: 163 LDKLQFVPNMVHITQSLKIVKEVDAALSLFRWAKKQPWYLPSDECYVVLFDGLNQGRDFV 222

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS---- 475
           G   L + ++    S G  L F+    +I +   ++K + A   F   +     I     
Sbjct: 223 GIQSLFEEMVQDSSSHG-DLSFNAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTY 281

Query: 476 ------------KFKLMLLYSSLLRT---------------LTKCKRDFDAINVLEEMIF 508
                        +K   +Y S+ +T               L K  R   A  + ++M  
Sbjct: 282 NNLMMLFLNKGLPYKAFEIYESMEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKE 341

Query: 509 SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY----- 563
             + P    FS L+      G      K++  ++  G  P A MF  LI +Y K      
Sbjct: 342 RKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDT 401

Query: 564 -------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
                  +  S   P+     ++ +S  K G+ + A  V +  EK   +P+
Sbjct: 402 ALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAMTVFKDMEKAGFLPT 452


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 99/514 (19%), Positives = 182/514 (35%), Gaps = 94/514 (18%)

Query: 67  LDPFIVTHALRS---APNADSALSIM----EALKSNPNFSHNQSTLHALATVLAKSQRNH 119
           +D  I  H L+    A   D AL I+      L   P+       L +L       Q + 
Sbjct: 148 VDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADD 207

Query: 120 ELKTLI--GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI 177
            L+ +   G + S       V +  ++  +   GD+      + E  QR       +Y+ 
Sbjct: 208 LLRMMAEGGAVCSPDV----VAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSS 263

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           V+    K     +A    RQ++++G +P++ TY  +I    + G+   A+ VF  +    
Sbjct: 264 VVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHS 323

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGAN 296
           I        +L+       +  EA+ + + M   G+ P   + ++ L      G +    
Sbjct: 324 ILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMT 383

Query: 297 EFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEW 356
           +    ML D    ++                        + V +K + +   L   +  +
Sbjct: 384 DLFDLMLGDGIAPDI----------------------YTFSVLIKAYANCGMLDKAMIIF 421

Query: 357 S--------PEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYA 408
           +        P+VV+        +TT  V   L      + A   F  +  Q G   D YA
Sbjct: 422 NEMRDHGVKPDVVT--------YTT--VIAALCRIGKMDDAMEKFNQMIDQ-GVAPDKYA 470

Query: 409 LEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR 468
              ++     HG +     LI ++ ++GMRL                             
Sbjct: 471 YHCLIQGFCTHGSLLKAKELILEIMNNGMRLD---------------------------- 502

Query: 469 TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
                      ++ +SS++  L K  R  DA N+ +  +  G  PD   +S LM  + L 
Sbjct: 503 -----------IVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLV 551

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           G  +   ++F  +   G+EP+  ++  L+  YCK
Sbjct: 552 GKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCK 585



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 8/137 (5%)

Query: 143 LMQWYSTSGDL----ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
           L+Q + T G L    EL+L   N   +    L    ++ +++   K G+  +A   F   
Sbjct: 474 LIQGFCTHGSLLKAKELILEIMNNGMR----LDIVFFSSIINNLCKLGRIMDAQNIFDLT 529

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
           ++ G  P++  Y+++++    +GK++ AL VF A+    I+     Y  LV G+  + R 
Sbjct: 530 VNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRI 589

Query: 259 DEAKSLLNEMRDDGKFP 275
           DE  SL  EM   G  P
Sbjct: 590 DEGLSLFREMLQKGIKP 606



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 47/84 (55%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ YSS++  L K +    A   L +M+  G++PD  T++ L+Y ++  G  K   ++F 
Sbjct: 258 LVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFK 317

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKY 563
            +R++ + PD     +L+ + CKY
Sbjct: 318 EMRRHSILPDVVTLNMLMGSLCKY 341



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 47/98 (47%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           Y+++M  Y   GK  +A+  F  ++  G  PN   Y  ++     +G++D  L +F  + 
Sbjct: 541 YSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREML 600

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
              IK ++  Y I+++G     R   AK   +EM + G
Sbjct: 601 QKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTESG 638



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 23/156 (14%)

Query: 452 GISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
           G S +AD  L+   +   +C P      ++ Y++++    K      A ++ +EM+  GI
Sbjct: 200 GKSGQADDLLRMMAEGGAVCSPD-----VVAYTTVIDCFFKEGDVNKACDLFKEMVQRGI 254

Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ---NGVEPDAYMFKVLIQAYC------- 561
            PD+ T+S +++        + + K  + +RQ    GV PD + +  LI  Y        
Sbjct: 255 PPDLVTYSSVVHALC---KARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKE 311

Query: 562 -----KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                K +   +++PD  T  +L  SL K G+ KEA
Sbjct: 312 AVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEA 347



 Score = 46.6 bits (109), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 56/138 (40%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+  Y   G ++  LS + E  Q+    ST  YNI++      G+   A   F +
Sbjct: 574 VVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHE 633

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + + G   N  TY +++         D A+ +F  L  M +K        ++ G     R
Sbjct: 634 MTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRR 693

Query: 258 FDEAKSLLNEMRDDGKFP 275
            +EAK L   +   G  P
Sbjct: 694 VEEAKDLFASISRSGLVP 711



 Score = 46.2 bits (108), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 98/477 (20%), Positives = 180/477 (37%), Gaps = 61/477 (12%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE- 201
           LM   + +   EL L+ + +  +    +     N ++  + +  +  EA++       E 
Sbjct: 121 LMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPEL 180

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK--QYLILVEGFVGVERFD 259
           G +P+  +Y+++++ L + GK   A ++   +       +     Y  +++ F      +
Sbjct: 181 GCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVN 240

Query: 260 EAKSLLNEMRDDGKFPG----RAMRVALERMQEMGFIQGANEFLREM-----LPDKRIKN 310
           +A  L  EM   G  P      ++  AL + + MG    A  FLR+M     LPD    N
Sbjct: 241 KACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMG---KAEAFLRQMVNKGVLPDNWTYN 297

Query: 311 VRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFV 370
              Y   S     E       VR+   ++    L             P+VV+L       
Sbjct: 298 NLIYGYSSTGQWKE------AVRVFKEMRRHSIL-------------PDVVTL------- 331

Query: 371 WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIA 430
               L+  + ++ K  E A   F  +A + G   DV++ + ML   A  G +  +  L  
Sbjct: 332 --NMLMGSLCKYGKIKE-ARDVFDTMAMK-GQNPDVFSYKIMLNGYATKGCLVDMTDLFD 387

Query: 431 KLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTL 490
            +  DG+     T  ++I  Y      D A+  F++ R           ++ Y++++  L
Sbjct: 388 LMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDH----GVKPDVVTYTTVIAAL 443

Query: 491 TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA 550
            +  +  DA+    +MI  G+ PD   +  L+  F   G     ++L   +  NG+  D 
Sbjct: 444 CRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDI 503

Query: 551 YMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
             F  +I   CK               N    PDA    +L       G+ ++A  V
Sbjct: 504 VFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRV 560



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 81/207 (39%), Gaps = 19/207 (9%)

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALK 462
           T   YA+  ++    R    EL      +L   G+R+       ++  +  +K+ D AL 
Sbjct: 114 TSHTYAI--LMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALD 171

Query: 463 AFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV--PDVQTFSG 520
                    G +     +  YS LL++L    +   A ++L  M   G V  PDV  ++ 
Sbjct: 172 ILLHRTPELGCVPD---VFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTT 228

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSN 568
           ++  F  +GD      LF  + Q G+ PD   +  ++ A CK             + N  
Sbjct: 229 VIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKG 288

Query: 569 LMPDAATKELLKKSLWKEGRRKEAAAV 595
           ++PD  T   L       G+ KEA  V
Sbjct: 289 VLPDNWTYNNLIYGYSSTGQWKEAVRV 315


>gi|414887654|tpg|DAA63668.1| TPA: hypothetical protein ZEAMMB73_339081 [Zea mays]
          Length = 1098

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 105/493 (21%), Positives = 194/493 (39%), Gaps = 46/493 (9%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  +  SG  E  L+ W E   R    +T ++N V++   K  +  EA E   ++    
Sbjct: 495 LLDGFFKSGKTEKALNLWKETLARGLAKNTTTFNTVINGLCKIERMPEAEELVDKMKQWR 554

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  TY  +      +G +D A  + + L  +    T + +  L+ G    ++  +  
Sbjct: 555 CPPDIITYRTLFSGYCKIGDMDRASRILNELENLGFAPTIEFFNSLITGHFIAKQHGKVN 614

Query: 263 SLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNV--------RY 313
            +L EM + G  P      AL     + G +  A     EM+    + N+         +
Sbjct: 615 DILFEMSNRGLSPNTVAYGALIAGWCKEGDLHTAYNLYLEMIEKGLVPNLFICSSLVSCF 674

Query: 314 YEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTT 373
           Y  G  D+ +    N  G  +   +   P L+   +AN +D  +         AK +W  
Sbjct: 675 YRKGKFDEANLVLQNLVGTDMIPDIS-APRLEIGKVANFIDTVAG---GNHHSAKIMWNI 730

Query: 374 RL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAK 431
            +  +CK+ R     E A +    +    G+  D +    ++   +  G V++   L   
Sbjct: 731 VIFGLCKLGRI----EDAKNLLADLK-DKGFVADNFTYSSLIHGCSASGFVDVAFDLRDT 785

Query: 432 LRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM---------LL 482
           + S G+     T   +I  YG+ K  +           L   +S FK +         + 
Sbjct: 786 MLSVGLTPNIVTYNSLI--YGLCKSGE-----------LSRAVSLFKKLWTKGISPNAIT 832

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++L+    K     +A  + + MI  GI P V T+S L+     QG  +   KL   + 
Sbjct: 833 YNTLIDKHCKDGYITEAFKLKQRMIEEGIHPTVFTYSILINGLCTQGYMEEAIKLLDQMI 892

Query: 543 QNGVEPDAYMFKVLIQAYCKYLS-NSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEK 601
           +N V+P+   +  LIQ Y +  S +  +MP   +  ++K S  +  RR  + +   R  +
Sbjct: 893 ENNVDPNYVTYWTLIQGYVRCESVDVPIMPLDQSTIVVKASPRRAVRRPGSVS---RPAR 949

Query: 602 INDVPSLALRGHI 614
           +   P  + R ++
Sbjct: 950 LTPAPKASGRDYV 962



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 110/595 (18%), Positives = 219/595 (36%), Gaps = 95/595 (15%)

Query: 51  RSNSSNSLSSLLNDRLLDPFIVTHAL-----RSAPNADSALSIMEALKSNPNFSHNQSTL 105
           ++N +  +   L  R   P IVT+ L      +  N + A  +++ ++ N     +++  
Sbjct: 293 QTNDARRMLDSLPGRGFSPNIVTYTLLVKGYCNEKNMEEAEGVVQEIRKNKQLVVDEAVF 352

Query: 106 HALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM-QWYSTSGDLELVLSTWNEYR 164
            A+     +  R  +   L+ ++  S+ L V++   N+M   Y   G +    +  +E  
Sbjct: 353 GAVINGYCQMGRMEDAARLLNEMVDSR-LQVNLFVYNIMINGYCKLGRMVEAHNILHEMT 411

Query: 165 QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
                  T SYN ++  Y K G   +A ET+  ++  G    + TY  +++   +LG +D
Sbjct: 412 GVGVRPDTYSYNSLVDGYCKKGLMNKAFETYNTMLRNGFAATTLTYNALLKGFCSLGSID 471

Query: 225 SALEVF-----------------------------SALPLMR------IKRTSKQYLILV 249
            AL ++                              AL L +      + + +  +  ++
Sbjct: 472 DALRLWFLMLKKGIAPNEISCSTLLDGFFKSGKTEKALNLWKETLARGLAKNTTTFNTVI 531

Query: 250 EGFVGVERFDEAKSLLNEMRD----------DGKFPG--------RAMRVALERMQEMGF 291
            G   +ER  EA+ L+++M+              F G        RA R+ L  ++ +GF
Sbjct: 532 NGLCKIERMPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRASRI-LNELENLGF 590

Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALAN 351
                EF   ++    I   + +   +D   + ++   S   +AYG  +  W     L  
Sbjct: 591 APTI-EFFNSLITGHFI--AKQHGKVNDILFEMSNRGLSPNTVAYGALIAGWCKEGDLHT 647

Query: 352 TLDEWSPEVVSLLADAKFVWTTRLVC--------------------KVLRHFKSPE---- 387
             + +   +   L    F+ ++ + C                     ++    +P     
Sbjct: 648 AYNLYLEMIEKGLVPNLFICSSLVSCFYRKGKFDEANLVLQNLVGTDMIPDISAPRLEIG 707

Query: 388 TAWHFFCWVAYQPGYTHDVYALEKMLTI-LARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
              +F   VA   G  H    +  ++   L + G +E    L+A L+  G      T   
Sbjct: 708 KVANFIDTVA--GGNHHSAKIMWNIVIFGLCKLGRIEDAKNLLADLKDKGFVADNFTYSS 765

Query: 447 IIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
           +I     S   D A     D R     +     ++ Y+SL+  L K      A+++ +++
Sbjct: 766 LIHGCSASGFVDVAF----DLRDTMLSVGLTPNIVTYNSLIYGLCKSGELSRAVSLFKKL 821

Query: 507 IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
              GI P+  T++ L+      G      KL   + + G+ P  + + +LI   C
Sbjct: 822 WTKGISPNAITYNTLIDKHCKDGYITEAFKLKQRMIEEGIHPTVFTYSILINGLC 876



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 73/164 (44%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L K  R  + K L+ D+    F+  +  + +L+   S SG +++     +         +
Sbjct: 735 LCKLGRIEDAKNLLADLKDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDTMLSVGLTPN 794

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
             +YN ++    K+G+   AV  F+++  +G  PN+ TY  +I+     G +  A ++  
Sbjct: 795 IVTYNSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLIDKHCKDGYITEAFKLKQ 854

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            +    I  T   Y IL+ G       +EA  LL++M ++   P
Sbjct: 855 RMIEEGIHPTVFTYSILINGLCTQGYMEEAIKLLDQMIENNVDP 898



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 66/139 (47%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           + +F  L++  + +G L+  L  ++E R     LS  S N +++  A+TG     V  F 
Sbjct: 173 AASFDLLLRALANAGQLDGALQVFDEMRTLGCRLSMRSCNSILNRLAQTGDLGATVAVFE 232

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           Q+   GA+P+  T  +M +    +  +  ALE    +  M ++     Y  ++ G+  V 
Sbjct: 233 QMQRAGALPDKFTVAIMAKAYCKVKGVVHALEFVEEMTKMGVEVNLVAYHAVMNGYCEVG 292

Query: 257 RFDEAKSLLNEMRDDGKFP 275
           + ++A+ +L+ +   G  P
Sbjct: 293 QTNDARRMLDSLPGRGFSP 311



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 71/158 (44%), Gaps = 16/158 (10%)

Query: 118 NHELKTLIGDISSSKFLNVS----------------VNFMNLMQWYSTSGDLELVLSTWN 161
           N    +LI   S+S F++V+                V + +L+     SG+L   +S + 
Sbjct: 760 NFTYSSLIHGCSASGFVDVAFDLRDTMLSVGLTPNIVTYNSLIYGLCKSGELSRAVSLFK 819

Query: 162 EYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG 221
           +   +    +  +YN ++  + K G   EA +  +++I+EG  P   TY+++I  L   G
Sbjct: 820 KLWTKGISPNAITYNTLIDKHCKDGYITEAFKLKQRMIEEGIHPTVFTYSILINGLCTQG 879

Query: 222 KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
            ++ A+++   +    +      Y  L++G+V  E  D
Sbjct: 880 YMEEAIKLLDQMIENNVDPNYVTYWTLIQGYVRCESVD 917


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 104/243 (42%), Gaps = 15/243 (6%)

Query: 65  RLLDPFIVT-------HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR 117
           R ++P +VT       H LRS    D A+ + + +     F+ +  +   L     K QR
Sbjct: 298 RGVEPNVVTYNALMDGHCLRS--EMDEAVKVFDTMVCK-GFAPDVVSYSTLINGYCKIQR 354

Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI 177
             +   L  ++   + +  +V +  LM      G L+  ++ ++E   R ++    SY I
Sbjct: 355 IEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCI 414

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           ++    K  +  EA+   + +      P+ + YT++I+ +   G+L++A ++FS L    
Sbjct: 415 LLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKG 474

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANE 297
           +      Y I++ G        EA  L  EM+  G  P       + R    GF++  NE
Sbjct: 475 LHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITR----GFLRN-NE 529

Query: 298 FLR 300
            LR
Sbjct: 530 TLR 532



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 86/399 (21%), Positives = 163/399 (40%), Gaps = 48/399 (12%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++N ++      GK  E +  F ++I EG  PN  TY  +I  L  +G   +A+ +  ++
Sbjct: 131 TFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSM 190

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG----RAMRVALERMQEM 289
                +     Y  +++      +  +A +L +EM   G  P      ++  AL  + E 
Sbjct: 191 EQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEW 250

Query: 290 GFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGV---QLKPWLDP 346
             +      L EM+  K + NV  +    D    E       V  A+ V    +K  ++P
Sbjct: 251 KHVTA---LLNEMVNSKIMPNVVIFSTVVDALCKEGK-----VMEAHDVVDMMIKRGVEP 302

Query: 347 KALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQP---GYT 403
             +          + S + +A  V+ T +VCK      +P+        V+Y     GY 
Sbjct: 303 NVVTYNALMDGHCLRSEMDEAVKVFDT-MVCKGF----APDV-------VSYSTLINGYC 350

Query: 404 HDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKA 463
             +  +EK + +       EL+   +           +ST+   +   G   +   A+  
Sbjct: 351 -KIQRIEKAMYLFEEMCRKELIPNTVT----------YSTLMHGLCHVG---RLQDAIAL 396

Query: 464 FHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
           FH+  T  G I  F   + Y  LL  L K +R  +AI +L+ +  S + PD+Q ++ ++ 
Sbjct: 397 FHEMVTR-GQIPDF---VSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVID 452

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
                G+ +  + LFS +   G+ P+ + + ++I   C+
Sbjct: 453 GMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQ 491



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 12/128 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++++S+++  L K  +  +A +V++ MI  G+ P+V T++ LM    L+ +     K+F 
Sbjct: 269 VVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFD 328

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEG 587
            +   G  PD   +  LI  YCK             +    L+P+  T   L   L   G
Sbjct: 329 TMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVG 388

Query: 588 RRKEAAAV 595
           R ++A A+
Sbjct: 389 RLQDAIAL 396



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 8/174 (4%)

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
           NL +W       + V +  NE      + +   ++ V+    K GK  EA +    +I  
Sbjct: 246 NLCEW-------KHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKR 298

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G  PN  TY  +++      ++D A++VF  +           Y  L+ G+  ++R ++A
Sbjct: 299 GVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKA 358

Query: 262 KSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
             L  EM      P       L   +  +G +Q A     EM+   +I +   Y
Sbjct: 359 MYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSY 412



 Score = 46.6 bits (109), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 79/420 (18%), Positives = 161/420 (38%), Gaps = 43/420 (10%)

Query: 187 KNFEAVETFRQVIDE-GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
           K++  V +    +D  G  PN  T  ++I    +L +L  A  V + +  +  +     +
Sbjct: 73  KHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATF 132

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLP 304
             L+ G     +  E   L ++M  +G  P       L   + ++G    A   LR M  
Sbjct: 133 NTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQ 192

Query: 305 DKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLL 364
                +V  Y    D    +        ++     L   +  + ++ ++  ++  + +L 
Sbjct: 193 GNCQPDVVVYTSIIDSLCKDR-------QVTQAFNLFSEMIHQGISPSIFTYNSLIHALC 245

Query: 365 ADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVEL 424
              ++   T L+ +++     P               ++  V AL K   ++  H   ++
Sbjct: 246 NLCEWKHVTALLNEMVNSKIMPNVVI-----------FSTVVDALCKEGKVMEAH---DV 291

Query: 425 VDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS 484
           VD +I +    G+     T   ++D + +  + D A+K F  D  +C   +    ++ YS
Sbjct: 292 VDMMIKR----GVEPNVVTYNALMDGHCLRSEMDEAVKVF--DTMVCKGFAPD--VVSYS 343

Query: 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544
           +L+    K +R   A+ + EEM    ++P+  T+S LM+     G  +    LF  +   
Sbjct: 344 TLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTR 403

Query: 545 GVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           G  PD   + +L+   C            K +  SN+ PD     ++   + + G  + A
Sbjct: 404 GQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAA 463



 Score = 46.2 bits (108), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 16/127 (12%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ--KLFSM 540
           Y +L+  L K      AI +L  M      PDV  ++ ++   +L  D ++ Q   LFS 
Sbjct: 167 YGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIID--SLCKDRQVTQAFNLFSE 224

Query: 541 VRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGR 588
           +   G+ P  + +  LI A C              + NS +MP+      +  +L KEG+
Sbjct: 225 MIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGK 284

Query: 589 RKEAAAV 595
             EA  V
Sbjct: 285 VMEAHDV 291


>gi|222628664|gb|EEE60796.1| hypothetical protein OsJ_14385 [Oryza sativa Japonica Group]
          Length = 808

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 99/226 (43%), Gaps = 18/226 (7%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D++    ++  L +   ++  +R++ ++   G R    T   +I  Y IS   + +
Sbjct: 199 GIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNES 258

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           ++ F    + CG I         +S +  L K  R  +A  + + M+  G  PD+ ++S 
Sbjct: 259 VRVF-KQMSSCGVIPTVDNC---NSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYST 314

Query: 521 LMYHFALQGDEKI--VQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSN 566
           +++ +A   D  +  V  +F+++   G+ P+ ++F +LI AY +             + N
Sbjct: 315 MLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQN 374

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRG 612
             ++PD  T   +  SL + GR  +A         I   PS A+ G
Sbjct: 375 KGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYG 420



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 88/184 (47%), Gaps = 7/184 (3%)

Query: 96  PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD--L 153
           P   +  S +HAL     K  R +E K +   +         +++  ++  Y+T+ D  L
Sbjct: 272 PTVDNCNSFIHALF----KHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCL 327

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
             V + +N    +    +   +NI+++ YA+ G   +A+  F  + ++G IP++ T+  +
Sbjct: 328 ADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATV 387

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD-DG 272
           I  L  +G+LD AL  F+ +  + +  +   Y  L++G        +AK L++EM + D 
Sbjct: 388 ISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDI 447

Query: 273 KFPG 276
             PG
Sbjct: 448 PPPG 451



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 45/80 (56%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           +SS++  L K  R  +  ++++ M+ +G  P+V TF+ LM  + L G+ +    L   + 
Sbjct: 455 FSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMA 514

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
             G+EP+ Y++  L+  YCK
Sbjct: 515 SIGIEPNCYIYGTLVDGYCK 534



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 26/176 (14%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS----GLMYHFALQGDEKIVQ 535
           +L+ +S+++ L K K    A +++++M+ SGI PD+ T+S    GL    A+   E++++
Sbjct: 169 ILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLE 228

Query: 536 KLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSL 583
           ++     + G  P++  +  LI  Y             K +S+  ++P          +L
Sbjct: 229 QMV----EAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHAL 284

Query: 584 WKEGRRKEAAAVEERCEKINDVP-----SLALRGHIWAVSSADLTRVHSIYRNSIT 634
           +K GR  EA  + +        P     S  L G+  A  S  L  VH+I+   +T
Sbjct: 285 FKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSC-LADVHNIFNLMLT 339



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 96/474 (20%), Positives = 171/474 (36%), Gaps = 44/474 (9%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN ++  Y+ +G   E+V  F+Q+   G IP        I  L   G+ + A  +F ++
Sbjct: 241 TYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSM 300

Query: 234 PLMRIKRTSKQYLILVEGFVGV--ERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMG 290
            L   K     Y  ++ G+         +  ++ N M   G  P +    + +      G
Sbjct: 301 VLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCG 360

Query: 291 FIQGANEFLREMLPDKRIKNVRYYED--------GSDDD--EDENDDNNSGV---RIAYG 337
            +  A     +M     I +   +          G  DD     N   + GV      YG
Sbjct: 361 MMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYG 420

Query: 338 VQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVA 397
             ++   +   L    +  S  +   +      + + ++  + +  +  E        V 
Sbjct: 421 CLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMV- 479

Query: 398 YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA 457
            Q G   +V     ++      G++E    L+  + S G+         ++D Y  + + 
Sbjct: 480 -QTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRI 538

Query: 458 DAALKAFHDD-RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
           D AL  F D       P S     +LYS +L  L + +R   A  +  EMI SG    + 
Sbjct: 539 DDALTVFRDMLHKGVKPTS-----VLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIH 593

Query: 517 TF----SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY--------- 563
           T+     GL  +        +++KLF+M     V+ D   F ++I A  K          
Sbjct: 594 TYGVVLGGLCRNNCTDEANMLLEKLFAM----NVKFDIITFNIVISAMFKVGRRQEAKEL 649

Query: 564 ---LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHI 614
              +S   L+P+  T  ++  +L KE   +EA  +    EK        L  HI
Sbjct: 650 FDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHI 703


>gi|359490016|ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Vitis vinifera]
          Length = 1442

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 20/215 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G+  D      +L   AR G+V+ V  +   +   G      T   II  YG   + D A
Sbjct: 359 GFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLA 418

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
            +  + D  L G   +    + Y+ L+ +L K     +A  V+ EM+ + + P ++TFS 
Sbjct: 419 FQ-LYSDMKLSG---RSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSA 474

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM---------- 570
           L+  +A  G     ++ F  + ++G++PD   + V++    ++  +   M          
Sbjct: 475 LICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHS 534

Query: 571 --PDAATKELLKKSLWKEGRRKEAAAV----EERC 599
             PD A  E++ + L KE R ++   V    EE C
Sbjct: 535 FKPDHALYEVMLRVLGKENREEDVHKVVKDMEELC 569



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 101/215 (46%), Gaps = 8/215 (3%)

Query: 67  LDPFIVTH-ALRSAPNADSALSIMEALKS-NPNFSHNQS----TLHALATVLAKSQRNHE 120
           + P I+T+  L SA + +S L   EA+K  N   +H       T +A+ +V  +   + E
Sbjct: 290 IQPDIITYNTLISACSRESNLE--EAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSRE 347

Query: 121 LKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS 180
              L  D+ S  FL  +V + +L+  ++  G+++ V     +  +        +YN ++ 
Sbjct: 348 AGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIH 407

Query: 181 VYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR 240
           +Y K G++  A + +  +   G  P++ TYTV+I+ L     +  A EV S +   R+K 
Sbjct: 408 MYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKP 467

Query: 241 TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           T + +  L+ G+    +  EA+   + M   G  P
Sbjct: 468 TLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKP 502



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 100/476 (21%), Positives = 191/476 (40%), Gaps = 50/476 (10%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQ---WYSTSGDL 153
           +F  + +    +  VL K  R  ++  ++ D+     +N  V    L++   +   +  L
Sbjct: 534 SFKPDHALYEVMLRVLGKENREEDVHKVVKDMEELCGMNSQVICSILVKGECFDHAANML 593

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
            L +S   E   R  LLS      ++  Y  +G++ EA E    + +  +  +      +
Sbjct: 594 RLAISQGCEL-DRENLLS------ILGSYGSSGRHLEARELLDFLREHSSGSHQLINEAL 646

Query: 214 IEHLVNLGKLDSAL-EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           I  L    +L  AL E   A        +   Y  L+      E F EA  + ++MR  G
Sbjct: 647 IIMLCKAHQLGDALREYGKARDFGLFCGSFTMYESLLLCCEENELFAEASQIFSDMRFYG 706

Query: 273 KFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSG 331
             P   + R  +    +MGF + A+      L D+  +    ++D S          ++G
Sbjct: 707 VEPSDHLYRSMVVTYCKMGFPETAH-----YLIDQAEEKGLLFDDVS---------IHTG 752

Query: 332 VRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWH 391
           V  AYG +LK W   ++L  +L +            K     R V   L H  +    + 
Sbjct: 753 VIEAYG-KLKLWQKAESLVGSLRQ------------KCTMVDRKVWNALIHAYAASGCYE 799

Query: 392 -----FFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
                F   +   P  T D  ++  ++  L   G ++ +  +I +L+  G ++  S+I L
Sbjct: 800 RARAIFNTMMRDGPSPTVD--SVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITL 857

Query: 447 IIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
           ++D +  +       K +   +        F  M LY  ++  L K KR  D   ++ EM
Sbjct: 858 MLDAFAHAGNIFEVKKIYQGMKA----AGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEM 913

Query: 507 IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
             +   PD+  ++ ++  +   GD K   +++ ++++ G++PD   +  LI  YC+
Sbjct: 914 EVARFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCR 969



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 107/498 (21%), Positives = 183/498 (36%), Gaps = 36/498 (7%)

Query: 85  ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
           AL + E L     +S N   L  + +VL K+ +      +     ++    V V +  +M
Sbjct: 171 ALEVYEWLNLRHWYSPNARMLATILSVLGKANQEALAVEIFARAEAASGNTVQV-YNAMM 229

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE--AVETFRQVIDEG 202
             Y+ +G    V    +  R R       S+N +++   K+G      A+E   +V   G
Sbjct: 230 GVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSG 289

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY--LILVEGFVGVERFDE 260
             P+  TY  +I        L+ A++V++ +   R +     Y  +I V G  G+ R  E
Sbjct: 290 IQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSR--E 347

Query: 261 AKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREML-----PDKRIKNVRYY 314
           A  L  ++   G  P        L      G +    E   +M+      D+   N   +
Sbjct: 348 AGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIH 407

Query: 315 EDGSDDDED-----ENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF 369
             G     D      +D   SG R    V     +D    AN + E + EV+S + +A+ 
Sbjct: 408 MYGKRGQHDLAFQLYSDMKLSG-RSPDAVTYTVLIDSLGKANMIKE-AAEVMSEMLNARV 465

Query: 370 VWTTR----LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELV 425
             T R    L+C   +  K  E    F C +  + G   D  A   ML IL R       
Sbjct: 466 KPTLRTFSALICGYAKAGKRVEAEETFDCML--RSGIKPDHLAYSVMLDILLRFNESGKA 523

Query: 426 DRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSS 485
            +L  ++     +   +   +++   G   + +   K   D   LCG  S+    +L   
Sbjct: 524 MKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDMEELCGMNSQVICSILVKG 583

Query: 486 LLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544
                 +C   FD A N+L   I  G   D +    ++  +   G     ++L   +R++
Sbjct: 584 ------EC---FDHAANMLRLAISQGCELDRENLLSILGSYGSSGRHLEARELLDFLREH 634

Query: 545 GVEPDAYMFKVLIQAYCK 562
                  + + LI   CK
Sbjct: 635 SSGSHQLINEALIIMLCK 652



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 79/185 (42%), Gaps = 18/185 (9%)

Query: 424 LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRT-LCGPISKFKLMLL 482
           L   L+ ++R  G++    T   +I         + A+K ++D     C P      +  
Sbjct: 277 LAIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPD-----LWT 331

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++++    +C    +A  + +++   G +PD  T++ L+Y FA +G+   V+++   + 
Sbjct: 332 YNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMV 391

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
           + G   D   +  +I  Y K             +  S   PDA T  +L  SL K    K
Sbjct: 392 KMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIK 451

Query: 591 EAAAV 595
           EAA V
Sbjct: 452 EAAEV 456



 Score = 42.4 bits (98), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 40/204 (19%), Positives = 87/204 (42%), Gaps = 7/204 (3%)

Query: 75   ALRSAPNADSALSIMEALKSNPNFSHNQSTLH---ALATVLAKSQRNHELKTLIGDISSS 131
            A   A N      I + +K+   F     T+H    +  +LAK +R  +++ ++ ++  +
Sbjct: 861  AFAHAGNIFEVKKIYQGMKAAGYFP----TMHLYRIMIGLLAKGKRVRDVEAMVSEMEVA 916

Query: 132  KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
            +F      + ++++ Y+  GD +     +   ++       ++YN ++ +Y +  +  E 
Sbjct: 917  RFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEG 976

Query: 192  VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
            +    ++   G  P   TY  +I     L  ++ A E+F  L     K     Y I+++ 
Sbjct: 977  LSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKM 1036

Query: 252  FVGVERFDEAKSLLNEMRDDGKFP 275
            F       +A+ LL  M++ G  P
Sbjct: 1037 FRNSGNHSKAEKLLGVMKEAGVEP 1060


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 2/176 (1%)

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           I+S   LNV  ++  L++ +  +G+LE+ L  + E  +   L +  +YN V+  Y K  +
Sbjct: 195 IASGVSLNV-FSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKR 253

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
             EA +  R +  EG  PN  TY ++I  L  +G+++    V + +           Y  
Sbjct: 254 IDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNT 313

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREM 302
           LV G+  V  F +A  L +EM  +G  P      +L   M + G +  A EF  +M
Sbjct: 314 LVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQM 369



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 94/220 (42%), Gaps = 24/220 (10%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T  +L   L + +R +E   L  ++ +   L     + +L+  Y   GDL   L+  +E 
Sbjct: 485 TYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEM 544

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL--- 220
            ++  L  T +YN++++   K  +  EA     ++  + +IPN  TY  +IE   ++   
Sbjct: 545 IKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFK 604

Query: 221 ------------GKLDSALEVFSALPLMRIKRTSKQ----YLILVEGFVGVERFDEAKSL 264
                       G ++ A +VF ++    IKR  K     Y +++ G        +A  L
Sbjct: 605 SVVALIKGFCMKGLMNEADQVFESM----IKRNQKPNEAVYNVIIHGHCRDGNVHKAHKL 660

Query: 265 LNEMRDDGKFPGRAMRVALER-MQEMGFIQGANEFLREML 303
             EM D G  P     +AL + +   G  +  N  +R++L
Sbjct: 661 YKEMVDFGFIPHTVTIIALVKALYSEGMDEQLNLVIRDIL 700



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 29/139 (20%), Positives = 63/139 (45%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
            V + +L+  +S  G ++     W+E  +     +  +YN +++ +  +G+  EA+   R
Sbjct: 378 GVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLR 437

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
            +  +G  P+  +Y+ +I       +LD A ++ + +    +   +  Y  L++G     
Sbjct: 438 GMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQR 497

Query: 257 RFDEAKSLLNEMRDDGKFP 275
           R +EA  L  EM +    P
Sbjct: 498 RLNEACDLFQEMLNKSLLP 516



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 66/175 (37%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T + +   L +  R  E   ++ ++    F    V +  L+  Y   G+    L   
Sbjct: 272 NLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLH 331

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           +E  +        +Y  +++   K G    A+E F Q+   G  PN  TYT +I      
Sbjct: 332 SEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQK 391

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           G +D A  ++  +       T   Y  L+ G     R +EA  LL  M   G  P
Sbjct: 392 GFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSP 446



 Score = 46.6 bits (109), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 24/208 (11%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA--D 458
           G   DV     ++  + + G++        ++   G+R    T   +I+  G S+K   D
Sbjct: 338 GLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLIN--GFSQKGFMD 395

Query: 459 AALKAFHDDRTLCG-PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
            A + + D+    G P +    ++ Y++LL       R  +AI +L  M   G+ PDV +
Sbjct: 396 EAYRIW-DEMIRSGFPPT----IVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVS 450

Query: 518 FSGLMYHFA-LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------L 564
           +S ++  F   Q  ++  Q    MV + GV PDA  +  LIQ  C+             +
Sbjct: 451 YSTIIAGFCRYQELDRAFQMNAEMVEK-GVSPDAITYSSLIQGLCEQRRLNEACDLFQEM 509

Query: 565 SNSNLMPDAATKELLKKSLWKEGRRKEA 592
            N +L+PD  T   L     KEG   EA
Sbjct: 510 LNKSLLPDEFTYTSLINGYCKEGDLNEA 537



 Score = 45.8 bits (107), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 13/129 (10%)

Query: 480 MLLYSSLLRTLTKCKRD-FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF 538
           +L Y+++L ++ +C++    A  V  EMI SG+  +V +++ L+  F   G+ ++  + F
Sbjct: 167 VLSYNAILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFF 226

Query: 539 SMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKE 586
             + +N   P+   +  +I AYCK             +    L P+  T  ++   L + 
Sbjct: 227 EEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRV 286

Query: 587 GRRKEAAAV 595
           GR +E + V
Sbjct: 287 GRIEETSGV 295



 Score = 43.5 bits (101), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS+++    + +    A  +  EM+  G+ PD  T+S L+     Q        LF  + 
Sbjct: 451 YSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEML 510

Query: 543 QNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRK 590
              + PD + +  LI  YCK             +     +PD  T  +L   L K+ R +
Sbjct: 511 NKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTR 570

Query: 591 EA 592
           EA
Sbjct: 571 EA 572



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 57/308 (18%), Positives = 114/308 (37%), Gaps = 27/308 (8%)

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           S F    V +  L+  +  SG +E  +        +       SY+ +++ + +  +   
Sbjct: 407 SGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDR 466

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A +   +++++G  P++ TY+ +I+ L    +L+ A ++F  +    +      Y  L+ 
Sbjct: 467 AFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLIN 526

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIK 309
           G+      +EA +L +EM   G  P      V +  + +    + A   L ++  D+ I 
Sbjct: 527 GYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIP 586

Query: 310 NVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF 369
           N   Y        D   ++ S +     V L      K L N  D+    ++        
Sbjct: 587 NGITY--------DTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIK------- 631

Query: 370 VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
                      R+ K  E  ++       + G  H  + L K +       H   +  L+
Sbjct: 632 -----------RNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALV 680

Query: 430 AKLRSDGM 437
             L S+GM
Sbjct: 681 KALYSEGM 688



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 42/79 (53%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           + YSSL++ L + +R  +A ++ +EM+   ++PD  T++ L+  +  +GD      L   
Sbjct: 484 ITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDE 543

Query: 541 VRQNGVEPDAYMFKVLIQA 559
           + + G  PD   + VLI  
Sbjct: 544 MIKKGFLPDTVTYNVLING 562



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 4/162 (2%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G + +V++   ++      G++E+  R   ++  +       T   +I  Y   K+ D A
Sbjct: 198 GVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEA 257

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
            K     R++ G       +L Y+ ++  L +  R  +   VL EM   G  PD  T++ 
Sbjct: 258 FKLL---RSM-GLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNT 313

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           L+  +   G+      L S + +NG+ PD   +  LI   CK
Sbjct: 314 LVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCK 355


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 82/178 (46%), Gaps = 5/178 (2%)

Query: 98  FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVL 157
           F++N S +HAL  +    +  H + TL+ ++ +SK +   V F  ++      G + +  
Sbjct: 288 FTYN-SLIHALCNL---CEWKH-VTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAH 342

Query: 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217
              +   +R       +Y  +M  +    +  EAV+ F  ++ +G +PN R+Y ++I   
Sbjct: 343 DVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGY 402

Query: 218 VNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             + ++D A+ +   + L  +   +  Y  L+ G   V R   A +L +EM   G+ P
Sbjct: 403 CQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIP 460



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 16/144 (11%)

Query: 480 MLLYSSLLRTLTKCKRDFDAI--NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL 537
           ++++S+++  L  CK    AI  +V++ MI  G+ PDV T++ LM    L+ +     K+
Sbjct: 322 VVVFSTVVDAL--CKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKV 379

Query: 538 FSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWK 585
           F  +   G  P+   + +LI  YC+             +S   L+ D  T   L   L  
Sbjct: 380 FDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCH 439

Query: 586 EGRRKEAAAVEERCEKINDVPSLA 609
            GR + A A+         +P L 
Sbjct: 440 VGRLQHAIALFHEMVASGQIPDLV 463



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 77/414 (18%), Positives = 159/414 (38%), Gaps = 36/414 (8%)

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE-GAIPNSRTYT 211
           L+  LS++N         ST  +  +++  AK  K++  V +    +D  G  P+  T  
Sbjct: 93  LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKM-KHYSTVLSLSTQMDSFGIPPDVYTLN 151

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
           ++I    +L +L  A  V + L  +  +  +  +  L+ G     +  EA  L ++   +
Sbjct: 152 ILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGE 211

Query: 272 GKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNS 330
           G  P       L   + ++G    A   LR M+      NV                   
Sbjct: 212 GFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNV------------------- 252

Query: 331 GVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPET 388
              IAY   +      + +    + +S  +   ++   F + + +  +C  L  +K   T
Sbjct: 253 ---IAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCN-LCEWKHVTT 308

Query: 389 AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII 448
             +        P    +V     ++  L + G + +   ++  +   G+     T   ++
Sbjct: 309 LLNEMVNSKIMP----NVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALM 364

Query: 449 DFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF 508
           D + +  + D A+K F D     G +   +    Y+ L+    + +R   A+ +LE+M  
Sbjct: 365 DGHCLRSEMDEAVKVF-DTMVHKGCVPNVRS---YNILINGYCQIQRMDKAMGLLEQMSL 420

Query: 509 SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            G++ D  T++ L++     G  +    LF  +  +G  PD   +++L+   CK
Sbjct: 421 QGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCK 474


>gi|302811221|ref|XP_002987300.1| hypothetical protein SELMODRAFT_125836 [Selaginella moellendorffii]
 gi|300144935|gb|EFJ11615.1| hypothetical protein SELMODRAFT_125836 [Selaginella moellendorffii]
          Length = 511

 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 62/119 (52%)

Query: 165 QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
           ++ KL S+ SYNIV++   K G+N  AVE FR++  +  +P+  T+  +I+ L   GK  
Sbjct: 140 RKMKLPSSMSYNIVIAACVKRGRNEAAVELFREMKVKKRVPDIFTFNTVIQSLSKAGKFK 199

Query: 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
            AL++   +  ++       + +LV G    +R  EA+S+L  M   G  P   +  AL
Sbjct: 200 EALDIVDEMVWLQCSPNELTFGLLVHGLCKAKRALEAESVLEVMDRVGCVPDVVLLTAL 258



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 94/490 (19%), Positives = 168/490 (34%), Gaps = 131/490 (26%)

Query: 165 QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
           Q    L  ++ NIV+    K G   +A E    ++D+G  P++ T   +++ L  + K++
Sbjct: 2   QSIACLDVKTCNIVVDSLCKGGLVDDAAELVHGMMDKGPYPDTVTCNSLLDGLFKVNKVE 61

Query: 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR------- 277
            A++++  +    +K  +  Y IL+ G     R  EA   L+    D + P R       
Sbjct: 62  HAMKLYEKMSRSFVKADAFTYNILLHGLCKGGRIQEACQKLSAALRDREAPVRHELLYEA 121

Query: 278 ---------------------------AMRVALERMQEMGFIQGANEFLREMLPDKRIKN 310
                                      +  + +    + G  + A E  REM   KR+ +
Sbjct: 122 LIGGLCKVGKYDHAMAVFRKMKLPSSMSYNIVIAACVKRGRNEAAVELFREMKVKKRVPD 181

Query: 311 VRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDE--W---SPEVVSLLA 365
           +  +             N     ++   + K  LD       +DE  W   SP  ++   
Sbjct: 182 IFTF-------------NTVIQSLSKAGKFKEALD------IVDEMVWLQCSPNELT--- 219

Query: 366 DAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELV 425
              F      +CK  R  ++          V  + G   DV  L  +++   + G V+  
Sbjct: 220 ---FGLLVHGLCKAKRALEAESVL-----EVMDRVGCVPDVVLLTALISGHLKEGRVDDA 271

Query: 426 DRLIAKLRSDGMRLPFSTIRLI-IDFYGISK-----KADAALKAFHDDRTLCGPISKFKL 479
            RL  ++ S G R     +R   I  +G+ K     +ADA ++   D+            
Sbjct: 272 SRLFERMLSGGQRWSKPNLRTFNIMIHGLCKANKVGEADALVRRMEDE------------ 319

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM-YHFALQGDEKIVQKLF 538
                                         G+ PD  TF+ ++  HF     +   ++LF
Sbjct: 320 -----------------------------CGVAPDEFTFNTIIDGHFKAGDSKGAFKQLF 350

Query: 539 SMVRQNGVEPDAYMFKVLIQAYCKYL--------------SNSNLMPDAATKELLKKSLW 584
             + + G  PD+  F +L+   CK                +     PD  +   L   L 
Sbjct: 351 QEMSRFGCHPDSVTFTILVSESCKQRRIHEALELVEQMTKNKGGCAPDTLSFNALLGCLC 410

Query: 585 KEGRRKEAAA 594
            +GR +EA A
Sbjct: 411 CDGRLEEAVA 420


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 94/204 (46%), Gaps = 5/204 (2%)

Query: 106 HALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQ 165
           +++A+ L K  R  E K L+  +        +++F  L+  Y   G+       + E  +
Sbjct: 443 NSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEE 502

Query: 166 RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
           +  + +  +YN+++  Y+K G   EA +   ++ + G IP+  T T +I      GK+D 
Sbjct: 503 KGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDM 562

Query: 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER 285
           AL++F  +P   +      Y  ++ G     R +EA  L +EM++ G  P   +  +L  
Sbjct: 563 ALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSL-- 620

Query: 286 MQEMGFIQGANEFLREMLPDKRIK 309
              +G +  A+E +   +   ++K
Sbjct: 621 ---VGSLHSADESISMQIQGSQVK 641



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 20/174 (11%)

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALK--AFHDDRTLCGP 473
           + + G +E    L+ +++  G+ L       +ID Y  S   D AL+     + + L   
Sbjct: 379 VCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESD 438

Query: 474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
           +        Y+S+   L K  R  +A  +L  M+  G+ P+  +F+ L+  +  +G+   
Sbjct: 439 V------FAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVE 492

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAAT 575
            +++F  + + G  P+   + VLI  Y K             L N  L+PD  T
Sbjct: 493 AKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYT 546



 Score = 45.4 bits (106), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 60/135 (44%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+  +S  G +E     + E R++        Y  ++S   ++G    A+  F +
Sbjct: 300 VTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDE 359

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + D+G IP++ TY  +I  +   G++++A  + + +    I      +  L++G+     
Sbjct: 360 MTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGM 419

Query: 258 FDEAKSLLNEMRDDG 272
            DEA  L   M   G
Sbjct: 420 VDEALRLQVVMEKKG 434



 Score = 43.1 bits (100), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 14/162 (8%)

Query: 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA----- 460
           VY+L  +L  L + G VE+  +L+ ++ + G++    T    I+  G  K+ D       
Sbjct: 229 VYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIE--GYFKRLDLGGVAEI 286

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           L     +   C  ++       Y+ L+   +   +  +A  + EEM   GI  DV  ++ 
Sbjct: 287 LTLMEKEGVACNVVT-------YTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTS 339

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           ++      G+ K    LF  +   G+ P A+ +  LI   CK
Sbjct: 340 IISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCK 381



 Score = 40.0 bits (92), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 8/103 (7%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDE----GAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           S  IV+    K G     VE  R+++DE    G   N  TY   IE       L    E+
Sbjct: 231 SLTIVLDGLCKRGD----VEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEI 286

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
            + +    +      Y +L+ GF  + + +EA+ L  EMR+ G
Sbjct: 287 LTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKG 329



 Score = 40.0 bits (92), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 18/81 (22%), Positives = 40/81 (49%)

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
           +Y+S++    +      A+ + +EM   G++P   T+  L++     G  +  Q L + +
Sbjct: 336 VYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEM 395

Query: 542 RQNGVEPDAYMFKVLIQAYCK 562
           +  G++ +  +F  LI  YC+
Sbjct: 396 QGKGIDLNPVIFNTLIDGYCE 416


>gi|15225722|ref|NP_180822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75160493|sp|Q8S8P6.1|PP180_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g32630
 gi|20197234|gb|AAM14987.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330253613|gb|AEC08707.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 624

 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 86/191 (45%), Gaps = 1/191 (0%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
            D A  I + ++    F  +  T + +A+   + +R  E K  +  +        +V++ 
Sbjct: 415 VDEASMIYDVMEQ-KGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYT 473

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
           NL+  Y   G++E     + E   +    +  +YN+++  Y K GK  EA +    +   
Sbjct: 474 NLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEAN 533

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G  P+S TYT +I        +D A+ +FS + L  + + S  Y +++ G     + DEA
Sbjct: 534 GMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEA 593

Query: 262 KSLLNEMRDDG 272
             L +EM+  G
Sbjct: 594 FGLYDEMKRKG 604



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/421 (19%), Positives = 158/421 (37%), Gaps = 63/421 (14%)

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           ++V  VY   G   E +  F  ++ +G   + R+  V +       ++D  LE+F  +  
Sbjct: 158 DLVFRVYVDNGMFEEGLRVFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEIFRRMVD 217

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG----RAMRVALERMQEMGF 291
             +K T     I+VEG       +++K L+ E    G  P       +  A  + ++   
Sbjct: 218 SGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSG 277

Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALAN 351
           ++G    L+ M  D  + N   Y                 + +   V+     D + L +
Sbjct: 278 VEGV---LKVMKKDGVVYNKVTYT----------------LLMELSVKNGKMSDAEKLFD 318

Query: 352 TLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEK 411
            + E   E    +  +   W  R          + + A+  F  +  + G +   Y    
Sbjct: 319 EMRERGIESDVHVYTSLISWNCRK--------GNMKRAFLLFDELT-EKGLSPSSYTYGA 369

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA--------LKA 463
           ++  + + G +   + L+ +++S G+ +       +ID Y      D A         K 
Sbjct: 370 LIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKG 429

Query: 464 FHDDRTLCGPISK---------------FKLM--------LLYSSLLRTLTKCKRDFDAI 500
           F  D   C  I+                F++M        + Y++L+    K     +A 
Sbjct: 430 FQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAK 489

Query: 501 NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
            +  EM   G+ P+  T++ ++Y +  QG  K  +KL + +  NG++PD+Y +  LI   
Sbjct: 490 RLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGE 549

Query: 561 C 561
           C
Sbjct: 550 C 550



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 18/169 (10%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII-------DFYGI 453
           G    VY+L  ++  L R G VE   +LI +    G++    T   II       DF G+
Sbjct: 219 GVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGV 278

Query: 454 SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP 513
               +  LK    D  +   ++       Y+ L+    K  +  DA  + +EM   GI  
Sbjct: 279 ----EGVLKVMKKDGVVYNKVT-------YTLLMELSVKNGKMSDAEKLFDEMRERGIES 327

Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           DV  ++ L+     +G+ K    LF  + + G+ P +Y +  LI   CK
Sbjct: 328 DVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCK 376



 Score = 43.1 bits (100), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 3/172 (1%)

Query: 104 TLHALATVLAKSQRNHEL---KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           T+++L  V+    R  E+   K LI + S       +  +  ++  Y    D   V    
Sbjct: 223 TVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVL 282

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
              ++   + +  +Y ++M +  K GK  +A + F ++ + G   +   YT +I      
Sbjct: 283 KVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRK 342

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           G +  A  +F  L    +  +S  Y  L++G   V     A+ L+NEM+  G
Sbjct: 343 GNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKG 394



 Score = 39.7 bits (91), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 77/393 (19%), Positives = 151/393 (38%), Gaps = 42/393 (10%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVID-EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           +YN +++ Y K  ++F  VE   +V+  +G + N  TYT+++E  V  GK+  A ++F  
Sbjct: 261 TYNTIINAYVKQ-RDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDE 319

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGF 291
           +    I+     Y  L+           A  L +E+ + G  P      AL + + ++G 
Sbjct: 320 MRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGE 379

Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALAN 351
           +  A   + EM                          + GV I   V     +D      
Sbjct: 380 MGAAEILMNEM-------------------------QSKGVNITQ-VVFNTLIDGYCRKG 413

Query: 352 TLDEWSPEVVSLLADAKF---VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYA 408
            +DE S  +  ++    F   V+T   +       K  + A  +  +   + G      +
Sbjct: 414 MVDEASM-IYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWL-FRMMEGGVKLSTVS 471

Query: 409 LEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA--LKAFHD 466
              ++ +  + G+VE   RL  ++ S G++    T  ++I  Y    K   A  L+A  +
Sbjct: 472 YTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANME 531

Query: 467 DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
              +  P S       Y+SL+          +A+ +  EM   G+  +  T++ ++   +
Sbjct: 532 ANGM-DPDS-----YTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLS 585

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
             G       L+  +++ G   D  ++  LI +
Sbjct: 586 KAGKSDEAFGLYDEMKRKGYTIDNKVYTALIGS 618



 Score = 39.3 bits (90), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 88/196 (44%), Gaps = 4/196 (2%)

Query: 80  PNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI--GDISSSKFLNVS 137
           P+  + +++   L SN  F+  +S L+++       +   EL + +   DIS  KF    
Sbjct: 95  PDLTAVVTLSHRLYSNRRFNEMRSLLNSVVNDGFYKRPVEELGSAMVDCDISEEKFEFFE 154

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE-AVETFR 196
             F  + + Y  +G  E  L  + +Y  +  L   E   IV  V AK  +  +  +E FR
Sbjct: 155 KFFDLVFRVYVDNGMFEEGLRVF-DYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEIFR 213

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           +++D G      + T+++E L   G+++ + ++     +  IK  +  Y  ++  +V   
Sbjct: 214 RMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQR 273

Query: 257 RFDEAKSLLNEMRDDG 272
            F   + +L  M+ DG
Sbjct: 274 DFSGVEGVLKVMKKDG 289



 Score = 38.9 bits (89), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 4/108 (3%)

Query: 483 YSSLLRTLTKCKRDFDAI-NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
           Y++++    K +RDF  +  VL+ M   G+V +  T++ LM      G     +KLF  +
Sbjct: 262 YNTIINAYVK-QRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEM 320

Query: 542 RQNGVEPDAYMFKVLIQAYCKY--LSNSNLMPDAATKELLKKSLWKEG 587
           R+ G+E D +++  LI   C+   +  + L+ D  T++ L  S +  G
Sbjct: 321 RERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYG 368


>gi|225456884|ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Vitis vinifera]
          Length = 631

 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 95/244 (38%), Gaps = 34/244 (13%)

Query: 352 TLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKS-PETAWHFFCWVAYQPGYTHDVYALE 410
           T+  WS EV   L + K  ++   V  VLR  +  P  A  FF WV   PGY H      
Sbjct: 210 TMSVWSSEVEKKLGELKNSFSDNFVLHVLRELRGYPLKALRFFQWVGECPGYEHSSITYN 269

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF------ 464
            +  +L R   +     ++ +++S G  +   T   I   +  +K  + A+K +      
Sbjct: 270 VIARVLGRDDSIGEFWSMVEEMKSKGHEMDIDTYIKISRQFQKNKMLEDAVKLYEIMMDG 329

Query: 465 ------HDDRTLCGPIS---------------KFKLM------LLYSSLLRTLTKCKRDF 497
                  D   L   IS               K++ +       +Y  + R+LT   R  
Sbjct: 330 PYKPSVQDCTMLLRSISLSSNPDLALVFRVTEKYEAVGNSLCKAVYDGIHRSLTSVGRFD 389

Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           +A  ++E M  +G  PD  T+S L+Y        +   KL   +   G  PD   + +LI
Sbjct: 390 EAGKIMESMRSAGCEPDNITYSQLVYGLCKARKLEEACKLLDEMEACGCVPDIKTWTILI 449

Query: 558 QAYC 561
           Q +C
Sbjct: 450 QGHC 453


>gi|302821834|ref|XP_002992578.1| hypothetical protein SELMODRAFT_43484 [Selaginella moellendorffii]
 gi|300139647|gb|EFJ06384.1| hypothetical protein SELMODRAFT_43484 [Selaginella moellendorffii]
          Length = 427

 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 51/99 (51%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y +++    K G+  EA E F  +I     P + TY  +I  L  +G+++ ALE+F  +
Sbjct: 317 TYWVIIDGLGKAGRGLEADEVFSDMIRGDVSPQTVTYNALISGLCRVGRVERALELFREM 376

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           P    +  +  Y  L++G    ER D+A +LL E  + G
Sbjct: 377 PQRECRPDAATYGALLDGICKAERADDAVTLLREASESG 415



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 157/404 (38%), Gaps = 25/404 (6%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           S N ++    + G++ +A   F+Q       PN+ TYTV++  L + G++D A EVF+ +
Sbjct: 4   SANQLLETLVRCGRSMDAYGIFKQRFSRMFKPNAFTYTVLVRGLCDAGRIDEACEVFNEM 63

Query: 234 P-LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFI 292
                I+  +  Y +L+ G +   + D+A S    M++  +         +  +   G +
Sbjct: 64  QGRGGIEAKTAIYSVLLNGLLRSGKLDDAFSYYQMMQETCQPDSSTYSTMIYELSRQGRL 123

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSD--DDEDENDDNNSGVRIAYGVQLKPWLDPKAL- 349
             A +  +EM+   +I ++       +         D    +R+      KP   P    
Sbjct: 124 DHATKVAQEMVDKDKIPDMPCLGVALEILCRCGRVSDAWKLLRMMKEKHFKPDAVPHTYV 183

Query: 350 ------ANTLDEWSPEVVSLLADAK----FVWTTRLVCKVLRHFKSPETAWHFFCWVAYQ 399
                 A  LDE       +  + K    FV T  ++   L   +  + AW F   +  +
Sbjct: 184 LRKFCEAGRLDEALKGFEEMTGNEKCEPDFV-TYSVIVDGLCSAQRLDDAWKFMEKMVAK 242

Query: 400 PGYTHDVYALEKMLTILARHGHVELV-DRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
            G   DV       +++  H    LV DR   KL  DG R   +     +  YG+ +K  
Sbjct: 243 -GRMPDVRTFR---SLVESHSKPRLVEDR--GKL-EDGKRAKPTATMYTLLLYGLLRKGR 295

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
           A        + L G  S     L Y  ++  L K  R  +A  V  +MI   + P   T+
Sbjct: 296 AGEAMELYQQVLSG--STRPSFLTYWVIIDGLGKAGRGLEADEVFSDMIRGDVSPQTVTY 353

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           + L+      G  +   +LF  + Q    PDA  +  L+   CK
Sbjct: 354 NALISGLCRVGRVERALELFREMPQRECRPDAATYGALLDGICK 397



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/140 (18%), Positives = 60/140 (42%), Gaps = 1/140 (0%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           S  +  ++   S  G L+       E   + K+       + + +  + G+  +A +  R
Sbjct: 107 SSTYSTMIYELSRQGRLDHATKVAQEMVDKDKIPDMPCLGVALEILCRCGRVSDAWKLLR 166

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL-MRIKRTSKQYLILVEGFVGV 255
            + ++   P++  +T ++      G+LD AL+ F  +    + +     Y ++V+G    
Sbjct: 167 MMKEKHFKPDAVPHTYVLRKFCEAGRLDEALKGFEEMTGNEKCEPDFVTYSVIVDGLCSA 226

Query: 256 ERFDEAKSLLNEMRDDGKFP 275
           +R D+A   + +M   G+ P
Sbjct: 227 QRLDDAWKFMEKMVAKGRMP 246


>gi|224111048|ref|XP_002315730.1| predicted protein [Populus trichocarpa]
 gi|222864770|gb|EEF01901.1| predicted protein [Populus trichocarpa]
          Length = 760

 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 97/215 (45%), Gaps = 3/215 (1%)

Query: 56  NSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAK- 114
           NS+ +L+ +   D  +V + L  A   D AL     ++      H++ T   +  +L + 
Sbjct: 104 NSIRALVPE--FDHSLVYNVLHGARKPDHALQFFRWVERAGLIQHDRETHMKIIQILGRY 161

Query: 115 SQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTES 174
           S  NH    ++ D+    F      F+ L+  Y  +G ++  +  +++ ++     S +S
Sbjct: 162 SMLNHARCIVLEDMPKKGFELDEDMFVLLIDSYGKAGIVQESVKMFSKMKELGVERSVKS 221

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YN +  V  + G+   A   F +++DEG  P   TY V+I       +L +A+  +  + 
Sbjct: 222 YNALFKVIVRKGRYMMAKRFFNKMLDEGIGPTRHTYNVLIWGFFLSMRLRTAVRFYEDMK 281

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
           +  I      Y  ++ G+   +R +EA+ L  EM+
Sbjct: 282 VRGISPDVVTYNTMINGYYRHKRMEEAEKLFAEMK 316



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 85/211 (40%), Gaps = 24/211 (11%)

Query: 371 WTTRL---------------VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
           WTTRL               V  VL   + P+ A  FF WV       HD     K++ I
Sbjct: 98  WTTRLQNSIRALVPEFDHSLVYNVLHGARKPDHALQFFRWVERAGLIQHDRETHMKIIQI 157

Query: 416 LARH---GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
           L R+    H   +  ++  +   G  L      L+ID YG +     ++K F   + L  
Sbjct: 158 LGRYSMLNHARCI--VLEDMPKKGFELDEDMFVLLIDSYGKAGIVQESVKMFSKMKELGV 215

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
             S    +  Y++L + + +  R   A     +M+  GI P   T++ L++ F L    +
Sbjct: 216 ERS----VKSYNALFKVIVRKGRYMMAKRFFNKMLDEGIGPTRHTYNVLIWGFFLSMRLR 271

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY 563
              + +  ++  G+ PD   +  +I  Y ++
Sbjct: 272 TAVRFYEDMKVRGISPDVVTYNTMINGYYRH 302



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 67/135 (49%), Gaps = 2/135 (1%)

Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           + + +YN V+      G+  +A   FRQ++ +G + +   +  +I      G  DSA E+
Sbjct: 471 MESGAYNPVIQYLCSHGQTGKAEILFRQLLKKG-VEDPLAFNNLICGHAKEGTPDSAFEI 529

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQE 288
              +    I R +  Y +L+E ++      +AK+ L+ M +DG  P  ++ R  +E + E
Sbjct: 530 LKIMGRKGIPRDADAYRLLIESYLRKGEPADAKTALDSMIEDGHLPDSSVFRSVMESLYE 589

Query: 289 MGFIQGANEFLREML 303
            G +Q A+  ++ M+
Sbjct: 590 DGRVQTASRVMKSMV 604


>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 530

 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 102/232 (43%), Gaps = 19/232 (8%)

Query: 377 CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
           C  +RH      +  FF W     G+        +M+ +  +  H +L   LI  ++S G
Sbjct: 114 CSGVRHGIPFLQSLAFFNWATTLEGFPSSPEPYNEMIDLAGKLRHFDLAWHLIDLMKSRG 173

Query: 437 MRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKR 495
           +R+  ST  +++  Y  +  A  A+ AF+  +   C P  K    ++ SSL +     KR
Sbjct: 174 VRITVSTFSVLVRRYVRAGLAAEAVHAFNRMEDYGCKP-DKVSFSIVISSLCK-----KR 227

Query: 496 DFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV 555
                 +  + +     PDV  ++ L++ +   GD    +++FS +++ GV+P+ Y + +
Sbjct: 228 RASEAELFFDSLKHKFEPDVIVYTSLVHGWCRAGDIAKAEEVFSDMKEAGVKPNVYTYSI 287

Query: 556 LIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
           +I + C+             + ++   P+A T   L +   K GR ++   V
Sbjct: 288 VIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQV 339



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 83/181 (45%), Gaps = 2/181 (1%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           +V F +LM+ +  +G  E VL  +N+ ++      T SYN ++  + K     EAV+   
Sbjct: 317 AVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFLIESHCKDENLDEAVKVLD 376

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
            ++ +G  PN+ T+  +   +  L  ++ A  +++ +  ++    +  Y IL+  F   +
Sbjct: 377 TMVKKGVAPNASTFNSIFGCIAELHDVNGAHRMYAKMKELKCMPNTLTYNILMRMFADSK 436

Query: 257 RFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIK-NVRYY 314
             D    L  EM +    P     R+ +    E G    A   ++EM+ +K +K N+  Y
Sbjct: 437 SIDMVLKLKKEMDESEVEPNVNTYRILILMFCEKGHWNNAYNLMKEMVEEKCLKPNLSIY 496

Query: 315 E 315
           E
Sbjct: 497 E 497



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 101/237 (42%), Gaps = 6/237 (2%)

Query: 79  APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV 138
           A  A  A + ME     P+    + +   + + L K +R  E + L  D    KF    +
Sbjct: 194 AAEAVHAFNRMEDYGCKPD----KVSFSIVISSLCKKRRASEAE-LFFDSLKHKFEPDVI 248

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
            + +L+  +  +GD+      +++ ++     +  +Y+IV+    + G+   A + F ++
Sbjct: 249 VYTSLVHGWCRAGDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSLCRCGQITRAHDVFSEM 308

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
           ID G  PN+ T+  ++   V  G+ +  L+V++ +  +     +  Y  L+E     E  
Sbjct: 309 IDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFLIESHCKDENL 368

Query: 259 DEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
           DEA  +L+ M   G  P           + E+  + GA+    +M   K + N   Y
Sbjct: 369 DEAVKVLDTMVKKGVAPNASTFNSIFGCIAELHDVNGAHRMYAKMKELKCMPNTLTY 425



 Score = 45.8 bits (107), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 44/80 (55%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS ++ +L +C +   A +V  EMI +G  P+  TF+ LM      G  + V ++++ ++
Sbjct: 285 YSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMK 344

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
           + G   D   +  LI+++CK
Sbjct: 345 RLGCAADTISYNFLIESHCK 364


>gi|147862837|emb|CAN78368.1| hypothetical protein VITISV_028672 [Vitis vinifera]
          Length = 927

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 137/354 (38%), Gaps = 78/354 (22%)

Query: 312 RYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT---LDEW---SPEVVSLLA 365
           R  +  +D D + + D N G  +   V +    DP+ ++     +DE       + ++L 
Sbjct: 169 RVSQGETDSDPETDGDENVGGDLDE-VNVNSGADPEEVSRVCRVIDELFALDRNMEAVLD 227

Query: 366 DAKFVWTTRLVCKVLRHFK-SPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVEL 424
           +     +  LV  VL  FK + + A+ FFCW   + G+TH+      M+++L R    E 
Sbjct: 228 ECNVDLSHALVVGVLERFKHARKPAFRFFCWAGQKAGFTHNSRTYNAMMSVLGRTRQFES 287

Query: 425 VDRLIAKLRSDGM------------------------------RLPF----STIRLIIDF 450
           +  ++ ++   G+                              R  F     TI  ++D 
Sbjct: 288 MMGMLGEMGEKGLLTMETFSIAIKAFAAAKERKKAVGVFELMKRYNFDAGVDTINCLLDN 347

Query: 451 YG---ISKKADAALKAFHD-------------------------DRTLCGPISK-FKLML 481
            G   + K+A A  +   D                          RT    I K FK  +
Sbjct: 348 LGRAKLGKEAQALFEKLEDRFTPNLRTYTVLLNGWCRIKNLVEAGRTWNEMIDKGFKPDI 407

Query: 482 L-YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           + + ++L  L KCK+  DAI + E M   G  P+V+T++ L+     Q   K   + F  
Sbjct: 408 IAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYTILIRDLCKQMKMKEAVEYFDE 467

Query: 541 VRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPD--AATKELLKKSLWKEGRRKEA 592
           +  +G +PDA ++  LI  +     N   M    A  KE+ +K    +GR   A
Sbjct: 468 MVDSGCQPDAAVYTCLITGF----GNQKKMDKVYALLKEMKEKGCPADGRTYNA 517



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 83/188 (44%), Gaps = 2/188 (1%)

Query: 85  ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
           A+ + E +K   NF     T++ L   L +++   E + L   +      N+    + L 
Sbjct: 322 AVGVFELMKRY-NFDAGVDTINCLLDNLGRAKLGKEAQALFEKLEDRFTPNLRTYTVLLN 380

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204
            W      +E    TWNE   +       +++ ++    K  K  +A++ F  +  +G  
Sbjct: 381 GWCRIKNLVE-AGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPS 439

Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL 264
           PN RTYT++I  L    K+  A+E F  +     +  +  Y  L+ GF   ++ D+  +L
Sbjct: 440 PNVRTYTILIRDLCKQMKMKEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYAL 499

Query: 265 LNEMRDDG 272
           L EM++ G
Sbjct: 500 LKEMKEKG 507



 Score = 42.7 bits (99), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 5/94 (5%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+R L K  +  +A+   +EM+ SG  PD   ++ L+  F  Q     V  L   ++
Sbjct: 445 YTILIRDLCKQMKMKEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMK 504

Query: 543 QNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATK 576
           + G   D   +  LI+     L  +  MPD A +
Sbjct: 505 EKGCPADGRTYNALIK-----LMTNRQMPDDAVR 533



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 39/214 (18%), Positives = 79/214 (36%), Gaps = 6/214 (2%)

Query: 64  DRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRN 118
           D+   P I+ H      L        A+ + E +K+    S N  T   L   L K  + 
Sbjct: 400 DKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAK-GPSPNVRTYTILIRDLCKQMKM 458

Query: 119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV 178
            E      ++  S     +  +  L+  +     ++ V +   E +++       +YN +
Sbjct: 459 KEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMKEKGCPADGRTYNAL 518

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI 238
           + +        +AV  ++++I  G  P   TY +M++        +    V+  +     
Sbjct: 519 IKLMTNRQMPDDAVRIYKKMIQNGIQPTLHTYNMMMKSYFYTRNYEMGCAVWKEMGRKGC 578

Query: 239 KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
                 Y++ + G +   R +EA   L EM + G
Sbjct: 579 CPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEKG 612



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 45/102 (44%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y I++    K  K  EAVE F +++D G  P++  YT +I    N  K+D    +   +
Sbjct: 444 TYTILIRDLCKQMKMKEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEM 503

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                    + Y  L++     +  D+A  +  +M  +G  P
Sbjct: 504 KEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQP 545


>gi|357502007|ref|XP_003621292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360248|gb|ABN08261.1| Pentatricopeptide repeat [Medicago truncatula]
 gi|355496307|gb|AES77510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 738

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 83/179 (46%), Gaps = 3/179 (1%)

Query: 116 QRNHELKTLIGDISSSKFLNVS---VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
           +++HELK     + +   +N+    V +  +      +G++E   + +N +         
Sbjct: 557 EKSHELKEAFILLRTMLEMNMKPSKVMYSKIFTALCCNGNMEGAHTLFNLFIHTGFTPDA 616

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            +Y I+++ Y KT    EA E F+ + + G  P++ TYT+MI     +  L  A E+F  
Sbjct: 617 VTYTIMINGYCKTNCLPEAHELFKDMKERGITPDAVTYTIMINGYCKMNCLREAHELFKD 676

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGF 291
           +    IK     Y ++++G +     + A  L NEM D G  PG  ++  +++  +  F
Sbjct: 677 MKERGIKPDVIAYTVIIKGLLNSGHTEIAFQLYNEMIDMGMTPGATLKRCIQKANKRQF 735



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 87/460 (18%), Positives = 180/460 (39%), Gaps = 52/460 (11%)

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           +L  +   +YR R   +   +Y  V+  +    K  EA   F ++  +G +P+   Y  +
Sbjct: 277 DLGYAVLQDYRTRNAHVHKYAYTAVIRGFCNETKLDEAESVFLEMEKQGLVPDVYVYCAL 336

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           +    N    D AL V+ ++    IK     +  ++     + R  E   +  E ++ G 
Sbjct: 337 VHGYCNSRNFDKALAVYKSMISRGIKTNCVIFSCILHCLDEMGRALEVVDMFEEFKESGL 396

Query: 274 FPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGV 332
           F  R A  +  + + ++G +  A   L E+   +   ++++Y               + +
Sbjct: 397 FIDRKAYNILFDALCKLGKVDDAVGMLDELKSMQLDVDMKHY---------------TTL 441

Query: 333 RIAYGVQLKPWLDPKALANTLDE--WSPEVVS--LLADAKFVWTTRLVCKVLRHFKSPET 388
              Y +Q KP ++ ++L   ++E  + P+VV+  +LA   F   T      L ++   + 
Sbjct: 442 INGYFLQGKP-IEAQSLFKEMEERGFKPDVVAYNVLAAGFFRNRTDFEAMDLLNYMESQ- 499

Query: 389 AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII 448
                     +P  T     +E     L   G VE  +     L+ + + +       ++
Sbjct: 500 --------GVEPNSTTHKIIIEG----LCSAGKVEEAEEFFNWLKGESVEISVEIYTALV 547

Query: 449 DFY---GISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEE 505
           + Y    + +K+    +AF   RT+     K    ++YS +   L  C  + +  + L  
Sbjct: 548 NGYCEAALIEKSHELKEAFILLRTMLEMNMK-PSKVMYSKIFTALC-CNGNMEGAHTLFN 605

Query: 506 M-IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY- 563
           + I +G  PD  T++ ++  +          +LF  +++ G+ PDA  + ++I  YCK  
Sbjct: 606 LFIHTGFTPDAVTYTIMINGYCKTNCLPEAHELFKDMKERGITPDAVTYTIMINGYCKMN 665

Query: 564 -----------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                      +    + PD     ++ K L   G  + A
Sbjct: 666 CLREAHELFKDMKERGIKPDVIAYTVIIKGLLNSGHTEIA 705



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 61/133 (45%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  Y  S + +  L+ +     R    +   ++ ++    + G+  E V+ F +  + G
Sbjct: 336 LVHGYCNSRNFDKALAVYKSMISRGIKTNCVIFSCILHCLDEMGRALEVVDMFEEFKESG 395

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
              + + Y ++ + L  LGK+D A+ +   L  M++    K Y  L+ G+    +  EA+
Sbjct: 396 LFIDRKAYNILFDALCKLGKVDDAVGMLDELKSMQLDVDMKHYTTLINGYFLQGKPIEAQ 455

Query: 263 SLLNEMRDDGKFP 275
           SL  EM + G  P
Sbjct: 456 SLFKEMEERGFKP 468



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 97/215 (45%), Gaps = 9/215 (4%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + H L     A   + + E  K +  F  ++   + L   L K  +  +   ++ ++ S 
Sbjct: 371 ILHCLDEMGRALEVVDMFEEFKESGLFI-DRKAYNILFDALCKLGKVDDAVGMLDELKSM 429

Query: 132 KFLNVSV-NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           + L+V + ++  L+  Y   G      S + E  +R       +YN++ + + +   +FE
Sbjct: 430 Q-LDVDMKHYTTLINGYFLQGKPIEAQSLFKEMEERGFKPDVVAYNVLAAGFFRNRTDFE 488

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A++    +  +G  PNS T+ ++IE L + GK++ A E F+ L    ++ + + Y  LV 
Sbjct: 489 AMDLLNYMESQGVEPNSTTHKIIIEGLCSAGKVEEAEEFFNWLKGESVEISVEIYTALVN 548

Query: 251 GFVG---VERFDEAKS---LLNEMRDDGKFPGRAM 279
           G+     +E+  E K    LL  M +    P + M
Sbjct: 549 GYCEAALIEKSHELKEAFILLRTMLEMNMKPSKVM 583



 Score = 39.7 bits (91), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 83/214 (38%), Gaps = 25/214 (11%)

Query: 81  NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDI----SSSKFLNV 136
           N   A S    LK+   FSHN  T  ++  +L     + +L +L  DI           +
Sbjct: 74  NPSLAYSYFTQLKNQHGFSHNIQTYTSIIRILCYYNLDRKLDSLFLDIIDHSKQDPCFEI 133

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAK-----------LLSTE----------SY 175
           +V F +L +  +   +   + + +N + +              LL T           S+
Sbjct: 134 NVLFDSLFEGVNDVNEDHYLFNAFNGFVKACVSQNMFVEAIDFLLQTRKNVVILPNILSF 193

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           N +++   K  +   A+  F +    G I N  TYT++I+ L   G  ++ + VF  +  
Sbjct: 194 NFLINRLVKHDEVDMALCLFVRFKSFGLIFNEYTYTIVIKALCKKGDWENVVRVFDEMKE 253

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
             +   S  Y   +EG     R D   ++L + R
Sbjct: 254 AGVDDDSYCYATFIEGLCKNNRSDLGYAVLQDYR 287


>gi|3193306|gb|AAC19289.1| contains similarity to Arabidopsis membrane-associated
           salt-inducible-like protein (GB:AL021637) [Arabidopsis
           thaliana]
          Length = 991

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 23/233 (9%)

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           V K++     P  A   F + + QP + H   +   ++  L R  +  L+D ++AK RS 
Sbjct: 54  VQKLIASQSDPLLAKEIFDYASQQPNFRHSRSSHLILILKLGRGRYFNLIDDVLAKHRSS 113

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK--C 493
           G  L       +I  Y  +K  +  L  F+        + +F        L R L     
Sbjct: 114 GYPLTGEIFTYLIKVYAEAKLPEKVLSTFY-------KMLEFNFTPQPKHLNRILDVLVS 166

Query: 494 KRDF--DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAY 551
            R +   A  + +     G++P+ ++++ LM  F L  D  I  +LF  + +  V PD  
Sbjct: 167 HRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVD 226

Query: 552 MFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
            +K+LIQ +C+             + N   +PD  +   L  SL ++ + +EA
Sbjct: 227 SYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREA 279



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 77/162 (47%), Gaps = 1/162 (0%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           LMQ +  + DL +    + +  +R  +   +SY I++  + + G+   A+E    ++++G
Sbjct: 196 LMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKG 255

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +P+  +YT ++  L    +L  A ++   + L         Y  ++ GF   +R  +A+
Sbjct: 256 FVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDAR 315

Query: 263 SLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREML 303
            +L++M  +G  P   + R  +  + + G      ++L EM+
Sbjct: 316 KVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMI 357



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 87/194 (44%), Gaps = 1/194 (0%)

Query: 85  ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
           A  I +     PNF H++S+   L   L + +  + +  ++    SS +      F  L+
Sbjct: 67  AKEIFDYASQQPNFRHSRSSHLILILKLGRGRYFNLIDDVLAKHRSSGYPLTGEIFTYLI 126

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV-YAKTGKNFEAVETFRQVIDEGA 203
           + Y+ +   E VLST+ +  +       +  N ++ V  +  G   +A E F+     G 
Sbjct: 127 KVYAEAKLPEKVLSTFYKMLEFNFTPQPKHLNRILDVLVSHRGYLQKAFELFKSSRLHGV 186

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
           +PN+R+Y ++++       L  A ++F  +    +      Y IL++GF    + + A  
Sbjct: 187 MPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAME 246

Query: 264 LLNEMRDDGKFPGR 277
           LL++M + G  P R
Sbjct: 247 LLDDMLNKGFVPDR 260


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 105/517 (20%), Positives = 195/517 (37%), Gaps = 67/517 (12%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T +AL  VL ++        +   +     L  + ++  L++ Y T GD E  +S  
Sbjct: 399 NTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSML 458

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
               +     +  +YNI++  Y  +G    A+     +   G  P+  +YT +I     +
Sbjct: 459 TNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKI 518

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAM 279
            K++ A  +F+ +    +      Y  L+ G+   E+ D A  +L  M+  G  P  +  
Sbjct: 519 SKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTY 578

Query: 280 RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQ 339
            V +  + +     GA E  + ML +K   +V  Y          N   N+G  I   ++
Sbjct: 579 NVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVI------NGLCNNGA-IPLALE 631

Query: 340 LKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQ 399
           +   +        L  +S  + +L  + +                  E A   F  +  Q
Sbjct: 632 MFNKMVKHGCLPNLHTYSSLIQALGQEGRV-----------------EEAEEMFSELKKQ 674

Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID-------FYG 452
            G   D     KM+ +    G V+     + ++ + G +    T  ++I        ++ 
Sbjct: 675 -GLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQNEMVYHK 733

Query: 453 ISKKADAALKAFHDDR--------TLCGPISKFKLML---LYSSLLRTLTKCKRDFDAIN 501
           +    +AA  +  DD+         L   +++    L   LY +LL  L++  R F+A N
Sbjct: 734 LVALPNAASTSTFDDQIINKDVISVLSSKLAELDFELSRQLYDALLSRLSRSGRWFEANN 793

Query: 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           +   M+     P+  T+     HF           L S++R   V+    +FK +    C
Sbjct: 794 LYRSMVSQSQCPNQDTYK----HF-----------LISLLRALKVDLAMDVFKHMSDQRC 838

Query: 562 KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
           +       +     KEL+  +L +  RRKEA  V E+
Sbjct: 839 E-------LHLTGYKELI-CTLCQLHRRKEARFVFEK 867



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 94/491 (19%), Positives = 189/491 (38%), Gaps = 101/491 (20%)

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
           T +Y  ++  Y +      A E F ++ +EG  PN+ TY+ +I  L N G+++ AL+  S
Sbjct: 263 TFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFIS 322

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-----------RAMR 280
            +    +  T   +   +     + R ++A  +  +M+  G  P            R  R
Sbjct: 323 EMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQRVSR 382

Query: 281 VAL---ERMQEMGFIQGA-------NEFLREM-----------------LPDKRIKN--V 311
           +A+    RM   G +          N  +  M                 LP+    N  +
Sbjct: 383 MAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELI 442

Query: 312 RYYEDGSDDDEDENDDNN------SGVRIAYGVQLKPWLDP-------------KALANT 352
           R Y    D ++  +   N      +   + Y + +K + D              KA    
Sbjct: 443 RGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQ 502

Query: 353 LDEWS-PEVVSLLAD-AKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
            DEWS  E++S     +K    + +  +++     P        + A   GY  D    E
Sbjct: 503 PDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVT----YTALISGYCKD----E 554

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470
           K+          +   R++ +++  G R    T  ++I  +G++K+ +     F     L
Sbjct: 555 KL----------DCAARMLERMKRSGCRPNVQTYNVLI--HGLTKQNN-----FSGAEEL 597

Query: 471 CGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
           C  + + K+   ++ YS+++  L        A+ +  +M+  G +P++ T+S L+     
Sbjct: 598 CKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQ 657

Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA------------YCKYLSNSNLMPDAAT 575
           +G  +  +++FS +++ G+ PD   +  +I+             +   + N+   P   T
Sbjct: 658 EGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQT 717

Query: 576 KELLKKSLWKE 586
            ++L K L  E
Sbjct: 718 YDVLIKGLQNE 728



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 73/160 (45%), Gaps = 6/160 (3%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   ++     ++  L + G+V   + +I K+   GM+    T   +I  Y  ++  D+A
Sbjct: 223 GLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSA 282

Query: 461 LKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
            + F+  D   C P +       YS+L+  L    R  +A++ + EM   G++P V TF+
Sbjct: 283 FEIFNRMDEEGCEPNAA-----TYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFT 337

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
             +      G  +   K+F  +++ G +P+ Y +  LI  
Sbjct: 338 APIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISG 377



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 6/194 (3%)

Query: 64  DRLLDPFIVTH-ALRSA----PNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRN 118
           DR L P  VT+ AL S        D A  ++E +K +     N  T + L   L K    
Sbjct: 533 DRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRS-GCRPNVQTYNVLIHGLTKQNNF 591

Query: 119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV 178
              + L   +   K     V +  ++     +G + L L  +N+  +   L +  +Y+ +
Sbjct: 592 SGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSL 651

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI 238
           +    + G+  EA E F ++  +G IP+  TY  MIE  V  GK+D A +    +     
Sbjct: 652 IQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGC 711

Query: 239 KRTSKQYLILVEGF 252
           + T + Y +L++G 
Sbjct: 712 QPTLQTYDVLIKGL 725



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 1/141 (0%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YN V++   K G   +A     +V   G  P++ TYT MI        LDSA E+F+ + 
Sbjct: 231 YNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMD 290

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQ 293
               +  +  Y  L+ G     R +EA   ++EM   G  P        +  + +MG I+
Sbjct: 291 EEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIE 350

Query: 294 GANEFLREMLPDKRIKNVRYY 314
            A +   +M       NV  Y
Sbjct: 351 DAWKIFIDMKKKGCKPNVYTY 371



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 92/202 (45%), Gaps = 22/202 (10%)

Query: 420 GHVELVDRLIAKLRSDGMRL-PFSTIRLIIDFYGISKKADAALKAFHD--DRTLCGPISK 476
           G  ++  R++  ++++G +   +S   LI  F  ISK  + A   F++  DR LC P   
Sbjct: 484 GDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISK-MELASGMFNEMMDRGLC-PNE- 540

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
               + Y++L+    K ++   A  +LE M  SG  P+VQT++ L++    Q +    ++
Sbjct: 541 ----VTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEE 596

Query: 537 LFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLW 584
           L  ++ +  + PD   +  +I   C              +     +P+  T   L ++L 
Sbjct: 597 LCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALG 656

Query: 585 KEGRRKEAAAVEERCEKINDVP 606
           +EGR +EA  +    +K   +P
Sbjct: 657 QEGRVEEAEEMFSELKKQGLIP 678



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 44/82 (53%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +L+Y+S++  L K     DA +++ ++  SG+ PD  T++ ++  +    D     ++F+
Sbjct: 228 LLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFN 287

Query: 540 MVRQNGVEPDAYMFKVLIQAYC 561
            + + G EP+A  +  LI   C
Sbjct: 288 RMDEEGCEPNAATYSTLINGLC 309



 Score = 42.7 bits (99), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 50/99 (50%)

Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           LS + Y+ ++S  +++G+ FEA   +R ++ +   PN  TY   +  L+   K+D A++V
Sbjct: 770 LSRQLYDALLSRLSRSGRWFEANNLYRSMVSQSQCPNQDTYKHFLISLLRALKVDLAMDV 829

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           F  +   R +     Y  L+     + R  EA+ +  +M
Sbjct: 830 FKHMSDQRCELHLTGYKELICTLCQLHRRKEARFVFEKM 868



 Score = 42.4 bits (98), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 28/138 (20%), Positives = 60/138 (43%), Gaps = 12/138 (8%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+R          A+++L  M+     P + T++ ++  +   GD  +  ++  +++
Sbjct: 438 YNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMK 497

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
            NG +PD + +  LI  +CK             + +  L P+  T   L     K+ +  
Sbjct: 498 ANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLD 557

Query: 591 EAAAVEERCEKINDVPSL 608
            AA + ER ++    P++
Sbjct: 558 CAARMLERMKRSGCRPNV 575



 Score = 42.4 bits (98), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 25/125 (20%), Positives = 55/125 (44%), Gaps = 12/125 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           +  Y++LL  L K       ++   +++  G+ P++  ++ ++      G+ +  + + +
Sbjct: 193 LFTYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVRDAESIIN 252

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEG 587
            V ++G++PD + +  +I  YC+             +      P+AAT   L   L   G
Sbjct: 253 KVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSG 312

Query: 588 RRKEA 592
           R  EA
Sbjct: 313 RVNEA 317



 Score = 39.7 bits (91), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 78/188 (41%), Gaps = 8/188 (4%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           DSA  I   +        N +T   L   L  S R +E    I +++    L     F  
Sbjct: 280 DSAFEIFNRMDEE-GCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTA 338

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE--AVETFRQVID 200
            +      G +E     + + +++    +  +Y  ++S     G+     A+  F ++  
Sbjct: 339 PIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLIS-----GQRVSRMAIGLFHRMSR 393

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
           +G +PN+ TY  ++  L+   ++DSAL VF+ +        +  Y  L+ G+  +   ++
Sbjct: 394 DGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEK 453

Query: 261 AKSLLNEM 268
           A S+L  M
Sbjct: 454 AMSMLTNM 461


>gi|222613081|gb|EEE51213.1| hypothetical protein OsJ_32035 [Oryza sativa Japonica Group]
          Length = 861

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 95/212 (44%), Gaps = 15/212 (7%)

Query: 77  RSAPNADSALSIMEALKSNPN-FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLN 135
           R++   D  L  M  L   PN FS+N + L+ L     +SQ   EL  ++ D        
Sbjct: 137 RTSDAMDIVLRRMTELGCIPNVFSYN-NLLNGLCDE-NRSQEALELLHMMADDRGGGSPP 194

Query: 136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV------------YA 183
             V++  ++  +   GD +   ST++E   R  L    +Y+ +++             + 
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHC 254

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           K G+  E+ + F  ++  G  P+  TY+ +I+     GK+D A+++ S +  + +K  + 
Sbjct: 255 KEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTV 314

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            Y  L+ G+  + R ++A  L  EM   G  P
Sbjct: 315 TYSTLINGYCKISRMEDALVLFKEMESSGVSP 346



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 1/158 (0%)

Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI 177
           +  +K L G +S     N +V +  L+  Y     +E  L  + E           +YNI
Sbjct: 295 DEAMKLLSGMVSVGLKPN-TVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNI 353

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           ++    +T +   A E + ++ + G      TY +++  L      D AL++F  L LM 
Sbjct: 354 ILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMD 413

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +K  ++ + I+++  + V R DEAK L      +G  P
Sbjct: 414 LKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVP 451



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 84/195 (43%), Gaps = 34/195 (17%)

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD--DRTLCGPISKFKLMLLYSS 485
           ++A  R  G      +   +I+ +     +D A   +H+  DR +         ++ YSS
Sbjct: 183 MMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGI------LPDVVTYSS 236

Query: 486 LLRTLTK----------CK--RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
           ++  L K          CK  R  ++  + + M+  G+ PD+ T+S L+  + L G    
Sbjct: 237 IIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDE 296

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKK 581
             KL S +   G++P+   +  LI  YCK             + +S + PD  T  ++ +
Sbjct: 297 AMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQ 356

Query: 582 SLWKEGRRKEAAAVE 596
            L++   R+ AAA E
Sbjct: 357 GLFQT--RRTAAAKE 369



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 20/190 (10%)

Query: 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK 476
            + G V   ++L   +   G++    T   +ID Y ++ K D A+K       L G +S 
Sbjct: 254 CKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMK------LLSGMVSV 307

Query: 477 F--KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
                 + YS+L+    K  R  DA+ + +EM  SG+ PD+ T++ ++            
Sbjct: 308 GLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAA 367

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCK---------YLSNSNLMP---DAATKELLKKS 582
           ++L+  + ++G + +   + +++   CK            N  LM    +A T  ++  +
Sbjct: 368 KELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDA 427

Query: 583 LWKEGRRKEA 592
           L K GR  EA
Sbjct: 428 LLKVGRNDEA 437



 Score = 40.0 bits (92), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 78/198 (39%), Gaps = 9/198 (4%)

Query: 79  APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSK----FL 134
           A   D A+ ++  + S      N  T   L     K  R  +   L  ++ SS      +
Sbjct: 291 AGKMDEAMKLLSGMVS-VGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDII 349

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
             ++    L Q   T+   EL +       Q    +   +YNI++    K     +A++ 
Sbjct: 350 TYNIILQGLFQTRRTAAAKELYVRITESGTQ----IELSTYNIILHGLCKNKLTDDALQM 405

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
           F+ +        +RT+ +MI+ L+ +G+ D A ++F A     +      Y ++ E  +G
Sbjct: 406 FQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIG 465

Query: 255 VERFDEAKSLLNEMRDDG 272
               +E   L   M D+G
Sbjct: 466 QGLLEELDQLFLSMEDNG 483



 Score = 40.0 bits (92), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 19/121 (15%)

Query: 456 KADAALKAFH---DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV 512
           ++  AL+  H   DDR    P      ++ Y++++    K      A +   EM+  GI+
Sbjct: 173 RSQEALELLHMMADDRGGGSPPD----VVSYTTVINGFFKEGDSDKAYSTYHEMLDRGIL 228

Query: 513 PDVQTFSGLM------------YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
           PDV T+S ++            +    +G     +KLF ++ + GV+PD   +  LI  Y
Sbjct: 229 PDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 288

Query: 561 C 561
           C
Sbjct: 289 C 289



 Score = 39.7 bits (91), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 46/99 (46%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y+ ++  Y   GK  EA++    ++  G  PN+ TY+ +I     + +++ AL +F  +
Sbjct: 280 TYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEM 339

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
               +      Y I+++G     R   AK L   + + G
Sbjct: 340 ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESG 378


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 104/243 (42%), Gaps = 15/243 (6%)

Query: 65  RLLDPFIVT-------HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR 117
           R ++P +VT       H LRS    D A+ + + +     F+ +  +   L     K QR
Sbjct: 307 RGVEPNVVTYNALMDGHCLRS--EMDEAVKVFDTMVCK-GFAPDVVSYSTLINGYCKIQR 363

Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI 177
             +   L  ++   + +  +V +  LM      G L+  ++ ++E   R ++    SY I
Sbjct: 364 IEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCI 423

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           ++    K  +  EA+   + +      P+ + YT++I+ +   G+L++A ++FS L    
Sbjct: 424 LLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKG 483

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANE 297
           +      Y I++ G        EA  L  EM+  G  P       + R    GF++  NE
Sbjct: 484 LHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITR----GFLRN-NE 538

Query: 298 FLR 300
            LR
Sbjct: 539 TLR 541



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 86/399 (21%), Positives = 163/399 (40%), Gaps = 48/399 (12%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++N ++      GK  E +  F ++I EG  PN  TY  +I  L  +G   +A+ +  ++
Sbjct: 140 TFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSM 199

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG----RAMRVALERMQEM 289
                +     Y  +++      +  +A +L +EM   G  P      ++  AL  + E 
Sbjct: 200 EQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEW 259

Query: 290 GFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGV---QLKPWLDP 346
             +      L EM+  K + NV  +    D    E       V  A+ V    +K  ++P
Sbjct: 260 KHVTA---LLNEMVNSKIMPNVVIFSTVVDALCKEGK-----VMEAHDVVDMMIKRGVEP 311

Query: 347 KALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQP---GYT 403
             +          + S + +A  V+ T +VCK      +P+        V+Y     GY 
Sbjct: 312 NVVTYNALMDGHCLRSEMDEAVKVFDT-MVCKGF----APDV-------VSYSTLINGYC 359

Query: 404 HDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKA 463
             +  +EK + +       EL+   +           +ST+   +   G   +   A+  
Sbjct: 360 -KIQRIEKAMYLFEEMCRKELIPNTVT----------YSTLMHGLCHVG---RLQDAIAL 405

Query: 464 FHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
           FH+  T  G I  F   + Y  LL  L K +R  +AI +L+ +  S + PD+Q ++ ++ 
Sbjct: 406 FHEMVTR-GQIPDF---VSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVID 461

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
                G+ +  + LFS +   G+ P+ + + ++I   C+
Sbjct: 462 GMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQ 500



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 12/128 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++++S+++  L K  +  +A +V++ MI  G+ P+V T++ LM    L+ +     K+F 
Sbjct: 278 VVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFD 337

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEG 587
            +   G  PD   +  LI  YCK             +    L+P+  T   L   L   G
Sbjct: 338 TMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVG 397

Query: 588 RRKEAAAV 595
           R ++A A+
Sbjct: 398 RLQDAIAL 405



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 8/174 (4%)

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
           NL +W       + V +  NE      + +   ++ V+    K GK  EA +    +I  
Sbjct: 255 NLCEW-------KHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKR 307

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G  PN  TY  +++      ++D A++VF  +           Y  L+ G+  ++R ++A
Sbjct: 308 GVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKA 367

Query: 262 KSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
             L  EM      P       L   +  +G +Q A     EM+   +I +   Y
Sbjct: 368 MYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSY 421



 Score = 46.2 bits (108), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 74/163 (45%), Gaps = 6/163 (3%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G+  ++     ++  L   G +  V  L  K+  +G +    T   +I+         AA
Sbjct: 133 GHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAA 192

Query: 461 LKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           ++     ++  C P      +++Y+S++ +L K ++   A N+  EMI  GI P + T++
Sbjct: 193 IRLLRSMEQGNCQPD-----VVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYN 247

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            L++      + K V  L + +  + + P+  +F  ++ A CK
Sbjct: 248 SLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCK 290



 Score = 46.2 bits (108), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 79/420 (18%), Positives = 161/420 (38%), Gaps = 43/420 (10%)

Query: 187 KNFEAVETFRQVIDE-GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
           K++  V +    +D  G  PN  T  ++I    +L +L  A  V + +  +  +     +
Sbjct: 82  KHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATF 141

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLP 304
             L+ G     +  E   L ++M  +G  P       L   + ++G    A   LR M  
Sbjct: 142 NTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQ 201

Query: 305 DKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLL 364
                +V  Y    D    +        ++     L   +  + ++ ++  ++  + +L 
Sbjct: 202 GNCQPDVVVYTSIIDSLCKDR-------QVTQAFNLFSEMIHQGISPSIFTYNSLIHALC 254

Query: 365 ADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVEL 424
              ++   T L+ +++     P               ++  V AL K   ++  H   ++
Sbjct: 255 NLCEWKHVTALLNEMVNSKIMPNVVI-----------FSTVVDALCKEGKVMEAH---DV 300

Query: 425 VDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS 484
           VD +I +    G+     T   ++D + +  + D A+K F  D  +C   +    ++ YS
Sbjct: 301 VDMMIKR----GVEPNVVTYNALMDGHCLRSEMDEAVKVF--DTMVCKGFAPD--VVSYS 352

Query: 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544
           +L+    K +R   A+ + EEM    ++P+  T+S LM+     G  +    LF  +   
Sbjct: 353 TLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTR 412

Query: 545 GVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           G  PD   + +L+   C            K +  SN+ PD     ++   + + G  + A
Sbjct: 413 GQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAA 472



 Score = 45.8 bits (107), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 16/127 (12%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ--KLFSM 540
           Y +L+  L K      AI +L  M      PDV  ++ ++   +L  D ++ Q   LFS 
Sbjct: 176 YGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIID--SLCKDRQVTQAFNLFSE 233

Query: 541 VRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGR 588
           +   G+ P  + +  LI A C              + NS +MP+      +  +L KEG+
Sbjct: 234 MIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGK 293

Query: 589 RKEAAAV 595
             EA  V
Sbjct: 294 VMEAHDV 300


>gi|302822703|ref|XP_002993008.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
 gi|300139208|gb|EFJ05954.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
          Length = 431

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/452 (18%), Positives = 163/452 (36%), Gaps = 112/452 (24%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           ++  Y  S  +  V+  + E  +     +  +Y  V+    K G    A++   ++I  G
Sbjct: 20  VIAAYGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMDFLDKMIKTG 79

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P++  Y V+++ L     +D A ++F+++  M        Y IL+      +R +EA 
Sbjct: 80  LEPDTLLYNVVLDGLGKANMIDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEAT 139

Query: 263 SLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDD 321
            L +EM + G  P   A    ++   + G I+ A   L++ML                  
Sbjct: 140 LLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKML------------------ 181

Query: 322 EDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLR 381
            D+N              L P           D+++  + SL+        T L C++  
Sbjct: 182 -DKN--------------LAP-----------DDYT--LNSLITAVSRTGRTELACEIFE 213

Query: 382 HFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPF 441
             K              + G   +  +   ML    + G V L  + + ++ + G++   
Sbjct: 214 RMK--------------KSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNS 259

Query: 442 STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAIN 501
            T   +I+  G +K A  A K                                       
Sbjct: 260 ITFNTLINCLGRAKYASEAYK--------------------------------------- 280

Query: 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           VL+EM  +G+ PDV T++ ++  FA  G+     ++F  + + G   +   + +LI A  
Sbjct: 281 VLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALV 340

Query: 562 KY------------LSNSNLMPDAATKELLKK 581
           K             +    ++PDA T  +L++
Sbjct: 341 KAGRYQDARDIYFDMKKKGILPDAITATVLQQ 372



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/208 (19%), Positives = 92/208 (44%), Gaps = 1/208 (0%)

Query: 79  APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV 138
           A   +SA+ +++ +  + N + +  TL++L T ++++ R      +   +  S     +V
Sbjct: 167 AGRIESAMVVLKKM-LDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTV 225

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
           +F  ++     +G + L     +E   R    ++ ++N +++   +     EA +  +++
Sbjct: 226 SFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEM 285

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
              G  P+  TYT MIE     G +  A E+F  +           Y +L++  V   R+
Sbjct: 286 RSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRY 345

Query: 259 DEAKSLLNEMRDDGKFPGRAMRVALERM 286
            +A+ +  +M+  G  P       L+++
Sbjct: 346 QDARDIYFDMKKKGILPDAITATVLQQL 373



 Score = 46.6 bits (109), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 41/205 (20%), Positives = 81/205 (39%), Gaps = 1/205 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           +V   L  A   D A  +  ++KS      +  T   L   L + +R+ E   L  ++  
Sbjct: 89  VVLDGLGKANMIDEACKLFASMKS-MGCPADDYTYAILIRSLGRCKRDEEATLLFDEMEE 147

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                 +  + N++  Y  +G +E  +    +   +       + N +++  ++TG+   
Sbjct: 148 RGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTEL 207

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A E F ++   G   N+ ++  M++     GK+  A +    +    IK  S  +  L+ 
Sbjct: 208 ACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLIN 267

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP 275
                +   EA  +L EMR  G  P
Sbjct: 268 CLGRAKYASEAYKVLQEMRSAGLTP 292


>gi|15228788|ref|NP_191813.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122214682|sp|Q3EAF8.1|PP294_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g62540, mitochondrial; Flags: Precursor
 gi|332646841|gb|AEE80362.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 599

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 2/205 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I   A  +A     A+ I E +K    F     T++ L   L +++   E + L  D   
Sbjct: 234 IAMKAFAAAKERKKAVGIFELMKKY-KFKIGVETINCLLDSLGRAKLGKEAQVLF-DKLK 291

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
            +F    + +  L+  +    +L      WN+           ++N+++    ++ K  +
Sbjct: 292 ERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSD 351

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A++ F  +  +G  PN R+YT+MI        +++A+E F  +    ++  +  Y  L+ 
Sbjct: 352 AIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLIT 411

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP 275
           GF   ++ D    LL EM++ G  P
Sbjct: 412 GFGTQKKLDTVYELLKEMQEKGHPP 436



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/312 (20%), Positives = 125/312 (40%), Gaps = 51/312 (16%)

Query: 316 DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEW---SPEVVSLLADAKFVWT 372
           DG D++ +   DN+    ++         + + +   +DE       + ++L + K   +
Sbjct: 101 DGCDEEVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLS 160

Query: 373 TRLVCKVL---RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
             L+ +VL   RH + P  A+ FFCW A + G+ H       M++ILA+    E +  ++
Sbjct: 161 HDLIVEVLERFRHARKP--AFRFFCWAAERQGFAHASRTYNSMMSILAKTRQFETMVSVL 218

Query: 430 AKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF------------HDDRTLCGPISKF 477
            ++ + G+ L   T  + +  +  +K+   A+  F                 L   + + 
Sbjct: 219 EEMGTKGL-LTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRA 277

Query: 478 KL------------------MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           KL                  M+ Y+ LL    + +   +A  +  +MI  G+ PD+   +
Sbjct: 278 KLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHN 337

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLS------------NS 567
            ++        +    KLF +++  G  P+   + ++I+ +CK  S            +S
Sbjct: 338 VMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDS 397

Query: 568 NLMPDAATKELL 579
            L PDAA    L
Sbjct: 398 GLQPDAAVYTCL 409



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 10/122 (8%)

Query: 455 KKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
           KK+DA +K FH  ++  GP    +    Y+ ++R   K      AI   ++M+ SG+ PD
Sbjct: 348 KKSDA-IKLFHVMKSK-GPCPNVRS---YTIMIRDFCKQSSMETAIEYFDDMVDSGLQPD 402

Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAA 574
              ++ L+  F  Q     V +L   +++ G  PD   +  LI    K ++N   MP+  
Sbjct: 403 AAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALI----KLMANQK-MPEHG 457

Query: 575 TK 576
           T+
Sbjct: 458 TR 459


>gi|356555246|ref|XP_003545945.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g47360-like [Glycine max]
          Length = 617

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 98/227 (43%), Gaps = 18/227 (7%)

Query: 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR 445
           P+    FF W  +Q GY H  Y   K   +L  H + +++  +I    ++G  +  +  R
Sbjct: 238 PQLGVRFFVWAGFQSGYRHSSYMYTKASNLLRIHHNPQIIRDVIESYEAEGSLVTVNMFR 297

Query: 446 LIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD-AINVLE 504
            ++     ++ AD AL      R +    +     ++Y+ ++R   K K D + A+ +  
Sbjct: 298 EVLKLCKEARLADMALWVL---RKMEDTFNLHADTVMYNLVIRLCCK-KGDIETALKLTS 353

Query: 505 EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYL 564
           EM  + + PD+ T+  ++  F+  G  +    +  ++R +G  P+  +   ++  +C+  
Sbjct: 354 EMSSNDLCPDLITYMAIVEGFSNAGRSEEAYSVLKVMRLHGCSPNLVILSAILDGFCRSG 413

Query: 565 SNSNLM-------------PDAATKELLKKSLWKEGRRKEAAAVEER 598
           S    +             P+  T   + +S  K G+ KEA  + +R
Sbjct: 414 SMERALELLDEMEKGGVCTPNVVTYTSVIQSFCKRGQWKEALDILDR 460



 Score = 42.4 bits (98), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 6/104 (5%)

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
           T  YN+V+ +  K G    A++   ++      P+  TY  ++E   N G+ +   E +S
Sbjct: 329 TVMYNLVIRLCCKKGDIETALKLTSEMSSNDLCPDLITYMAIVEGFSNAGRSE---EAYS 385

Query: 232 ALPLMRIKRTSKQYLIL---VEGFVGVERFDEAKSLLNEMRDDG 272
            L +MR+   S   +IL   ++GF      + A  LL+EM   G
Sbjct: 386 VLKVMRLHGCSPNLVILSAILDGFCRSGSMERALELLDEMEKGG 429


>gi|357431224|gb|AET78289.1| At1g03560-like protein [Arabidopsis halleri]
 gi|357431228|gb|AET78291.1| At1g03560-like protein [Arabidopsis halleri]
          Length = 161

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 54/98 (55%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           Y +++  YAK+G   +A+   +++IDEG  P+  TY+V++  L   G+++ AL+ F    
Sbjct: 9   YTVLIDGYAKSGSVEDAIRLLQRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFKTCR 68

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
              +   S  Y  L++G   V R DEA+ L  EM + G
Sbjct: 69  FNGLAINSMFYSSLIDGLGKVGRVDEAERLFEEMSEKG 106



 Score = 48.1 bits (113), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 1/137 (0%)

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
           NV++ +  L+  Y+ SG +E  +                +Y++V++   K G+  EA++ 
Sbjct: 5   NVAI-YTVLIDGYAKSGSVEDAIRLLQRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDY 63

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
           F+     G   NS  Y+ +I+ L  +G++D A  +F  +      R S  Y  L++ F  
Sbjct: 64  FKTCRFNGLAINSMFYSSLIDGLGKVGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTK 123

Query: 255 VERFDEAKSLLNEMRDD 271
             + DEA +L   M ++
Sbjct: 124 HGKVDEALALFKRMEEE 140



 Score = 40.4 bits (93), Expect = 2.9,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 5/147 (3%)

Query: 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK 476
           A+ G VE   RL+ ++  +G +    T  ++++    + + + AL  F   R     I+ 
Sbjct: 17  AKSGSVEDAIRLLQRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFKTCRFNGLAINS 76

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
               + YSSL+  L K  R  +A  + EEM   G   D   ++ L+  F   G       
Sbjct: 77  ----MFYSSLIDGLGKVGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEALA 132

Query: 537 LFS-MVRQNGVEPDAYMFKVLIQAYCK 562
           LF  M  + G +   Y + +LI    K
Sbjct: 133 LFKRMEEEEGCDQTVYTYTILISGMFK 159


>gi|357431222|gb|AET78288.1| At1g03560-like protein [Arabidopsis halleri]
 gi|357431240|gb|AET78297.1| At1g03560-like protein [Arabidopsis halleri]
 gi|357431242|gb|AET78298.1| At1g03560-like protein [Arabidopsis halleri]
 gi|357431244|gb|AET78299.1| At1g03560-like protein [Arabidopsis halleri]
 gi|357431246|gb|AET78300.1| At1g03560-like protein [Arabidopsis halleri]
 gi|357431262|gb|AET78308.1| At1g03560-like protein [Arabidopsis halleri]
          Length = 161

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 54/98 (55%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           Y +++  YAK+G   +A+   +++IDEG  P+  TY+V++  L   G+++ AL+ F    
Sbjct: 9   YTVLIDGYAKSGSVEDAIRLLQRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFKTCR 68

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
              +   S  Y  L++G   V R DEA+ L  EM + G
Sbjct: 69  FNGLAINSMFYSSLIDGLGKVGRVDEAERLFEEMSEKG 106



 Score = 47.8 bits (112), Expect = 0.018,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 1/137 (0%)

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
           NV++ +  L+  Y+ SG +E  +                +Y++V++   K G+  EA++ 
Sbjct: 5   NVAI-YTVLIDGYAKSGSVEDAIRLLQRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDY 63

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
           F+     G   NS  Y+ +I+ L  +G++D A  +F  +      R S  Y  L++ F  
Sbjct: 64  FKTCRFNGLAINSMFYSSLIDGLGKVGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTK 123

Query: 255 VERFDEAKSLLNEMRDD 271
             + BEA +L   M ++
Sbjct: 124 HGKVBEALALFKRMEEE 140



 Score = 40.4 bits (93), Expect = 2.7,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 5/147 (3%)

Query: 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK 476
           A+ G VE   RL+ ++  +G +    T  ++++    + + + AL  F   R     I+ 
Sbjct: 17  AKSGSVEDAIRLLQRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFKTCRFNGLAINS 76

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
               + YSSL+  L K  R  +A  + EEM   G   D   ++ L+  F   G       
Sbjct: 77  ----MFYSSLIDGLGKVGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVBEALA 132

Query: 537 LFS-MVRQNGVEPDAYMFKVLIQAYCK 562
           LF  M  + G +   Y + +LI    K
Sbjct: 133 LFKRMEEEEGCDQTVYTYTILISGMFK 159


>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
 gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
          Length = 538

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 113/261 (43%), Gaps = 30/261 (11%)

Query: 378 KVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM 437
           +V+R F+  +         A  PGY          L  L + G+++   + + +LR  G+
Sbjct: 246 RVIRFFEEEKARKGGSLEAAAYPGY----------LDALCKAGYLDRARKSVEELRQSGV 295

Query: 438 RLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
                T  ++I+ +  + + DA+L+   D  R    P      ++ YS+L+  L K ++ 
Sbjct: 296 VPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPD-----VVTYSTLINVLCKERKF 350

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
            DA  +LE M  +G  P+V T++ +M      G    V +++ M+ ++   PD   + ++
Sbjct: 351 QDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSII 410

Query: 557 IQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKI-- 602
           +    K             + +S   PDAA   ++  SL + G+ +EA  +    E    
Sbjct: 411 MNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEEACGMYHGMEVTVA 470

Query: 603 NDVPSLALRGHIWAVSSADLT 623
            D    AL G + A+  A+ T
Sbjct: 471 GDNICRALAGLVAALCDAERT 491



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 5/160 (3%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           + G   D  A   + T L R      V RL   L S G+    +T +L++D    +  A+
Sbjct: 12  EAGVKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMAN 71

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
            AL+   +   +  P      + +Y+ ++  L +  R  DA  VLE+M+   IVP+V T+
Sbjct: 72  QALELVRELSGVYTPT-----LFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTY 126

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           + L+         K+ +++F  +++NG +P+   +  LIQ
Sbjct: 127 TILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQ 166



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 47/102 (46%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y I+++   ++ K   A E F+++   G  PN  TY  +I+HL   G++D AL V    
Sbjct: 125 TYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQ 184

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             + +         +V G     R D+A   + EMR  G  P
Sbjct: 185 RSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRP 226



 Score = 39.7 bits (91), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 45/95 (47%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN VM    K+GK  E    +  ++     P+  TY++++  L   G LDSA+++F  +
Sbjct: 371 TYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELI 430

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
              R    +  Y +++       + +EA  + + M
Sbjct: 431 KSSREGPDAAAYSMVITSLCRAGKLEEACGMYHGM 465



 Score = 38.9 bits (89), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 43/95 (45%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YN +++   +  +  +A +   ++++E  +PN  TYT+++  L    K   A EVF  + 
Sbjct: 91  YNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMK 150

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
               K     Y  L++        DEA  ++ E R
Sbjct: 151 RNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQR 185


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 113/271 (41%), Gaps = 50/271 (18%)

Query: 67  LDPFIVTH-----ALRSAPNADSALSI---MEALKSNPNFSHNQSTLHALATVLAKSQRN 118
           L P IVT+      L +    D A+++   M  L   PN      T +AL     K +  
Sbjct: 304 LKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIV----TFNALINGFCKKKMI 359

Query: 119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV---------------LSTWN-- 161
            E + L  DI+    +  ++ F  ++  +  +G +E                 +ST+N  
Sbjct: 360 KEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCL 419

Query: 162 --------EYRQRAKLLS----------TESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
                     R   KLL+            +YNI++  + K G+  +A +   ++++ G 
Sbjct: 420 IAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGV 479

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
            PN  TY  +++     G L +AL+V + +     +     Y +L++GF    + ++A  
Sbjct: 480 KPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANR 539

Query: 264 LLNEMRDDGKFPGRAMR--VALERMQEMGFI 292
           LLNEM + G  P R     V LE M E GFI
Sbjct: 540 LLNEMLEKGLNPNRTTYDVVRLE-MLEKGFI 569



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 90/224 (40%), Gaps = 16/224 (7%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N +T +     L K+ + ++ + +I DI +  F    V +  L+  +   G      S  
Sbjct: 199 NLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKG------SAG 252

Query: 161 NEYRQRA--------KLLSTE-SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT 211
             YR  A        K+   E ++N ++  + K      A   F ++  +G  PN  TY 
Sbjct: 253 KMYRADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYN 312

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
            +I  L N GKLD A+ ++  +  + +K     +  L+ GF   +   EA+ L +++ + 
Sbjct: 313 SLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQ 372

Query: 272 GKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
              P        ++   + G ++        ML +    NV  Y
Sbjct: 373 DLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTY 416



 Score = 47.0 bits (110), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 48/83 (57%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y+SL+  L+   +  +AI + ++M+  G+ P++ TF+ L+  F  +   K  +KLF 
Sbjct: 308 IVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFD 367

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK 562
            + +  + P+A  F  +I A+CK
Sbjct: 368 DIAEQDLVPNAITFNTMIDAFCK 390



 Score = 45.4 bits (106), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 79/189 (41%), Gaps = 4/189 (2%)

Query: 82  ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
           AD+ L  M A K  PN    + T + L     K +     K    ++         V + 
Sbjct: 257 ADAILKEMLANKICPN----EITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYN 312

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
           +L+   S +G L+  ++ W++        +  ++N +++ + K     EA + F  + ++
Sbjct: 313 SLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQ 372

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
             +PN+ T+  MI+     G ++    + +++    I      Y  L+ G    +    A
Sbjct: 373 DLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAA 432

Query: 262 KSLLNEMRD 270
           K LLNEM +
Sbjct: 433 KKLLNEMEN 441



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 85/200 (42%), Gaps = 29/200 (14%)

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY------GISKKADAALKAFHDDRT 469
           L + G +   + +I  +++ G      T   +ID +      G   +ADA LK    ++ 
Sbjct: 210 LCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANKI 269

Query: 470 LCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
               I+       +++L+    K +    A N  EEM   G+ P++ T++ L+   +  G
Sbjct: 270 CPNEIT-------FNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNG 322

Query: 530 --DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAAT 575
             DE I   L+  +   G++P+   F  LI  +CK             ++  +L+P+A T
Sbjct: 323 KLDEAIA--LWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAIT 380

Query: 576 KELLKKSLWKEGRRKEAAAV 595
              +  +  K G  +E  A+
Sbjct: 381 FNTMIDAFCKAGMMEEGFAL 400



 Score = 43.1 bits (100), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 100/473 (21%), Positives = 178/473 (37%), Gaps = 77/473 (16%)

Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           LS  S N ++S   K  +  E    ++++I     PN  T+ + I  L   GKL+ A +V
Sbjct: 163 LSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDV 222

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEM 289
              +           Y  L++G                                 +    
Sbjct: 223 IEDIKAWGFSPNIVTYNTLIDGHC-------------------------------KKGSA 251

Query: 290 GFIQGANEFLREMLPDKRIKNVRYYE---DGSDDDEDENDDNNSGVRIAYGVQLKPWLDP 346
           G +  A+  L+EML +K   N   +    DG   DE     N    + A+    +  L P
Sbjct: 252 GKMYRADAILKEMLANKICPNEITFNTLIDGFCKDE-----NVLAAKNAFEEMQRQGLKP 306

Query: 347 K---------ALANT--LDE----WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWH 391
                      L+N   LDE    W  ++V L      V    L+    +  K  + A  
Sbjct: 307 NIVTYNSLINGLSNNGKLDEAIALWD-KMVGLGLKPNIVTFNALINGFCKK-KMIKEARK 364

Query: 392 FFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY 451
            F  +A Q     +      M+    + G +E    L   +  +G+    ST   +I   
Sbjct: 365 LFDDIAEQD-LVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGL 423

Query: 452 GISKKADAALKAFHDDRTLCGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIF 508
             ++   AA K  ++       +  ++L   ++ Y+ L+    K      A  +L EM+ 
Sbjct: 424 CRNQNVRAAKKLLNE-------MENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLN 476

Query: 509 SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY--LSN 566
            G+ P+  T++ LM  + ++G+ K   K+ + + + G   +   + VLI+ +CK   L +
Sbjct: 477 VGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLED 536

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAVSS 619
           +N + +    E+L+K L    R        E  EK   +P   + GH++ +SS
Sbjct: 537 ANRLLN----EMLEKGL-NPNRTTYDVVRLEMLEK-GFIPD--IEGHLYNISS 581


>gi|334183970|ref|NP_177858.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332197845|gb|AEE35966.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 402

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 107/275 (38%), Gaps = 31/275 (11%)

Query: 81  NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI--------------- 125
           +  +ALS  + +   PNF HN ++  +L T+L   +  +E+  +                
Sbjct: 39  DPQTALSFSDWISRIPNFKHNVTSYASLVTLLCSQEIPYEVPKITILMIKSCNSVRDALF 98

Query: 126 ----------GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
                     GD    K+      + NL+   +  G +E +   + E  +        ++
Sbjct: 99  VVDFCRTMRKGDSFEIKYKLTPKCYNNLLSSLARFGLVEEMKRLYTEMLEDLVSPDIYTF 158

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           N +++ Y K G   EA +    +I  G  P+  TYT  I       ++D+A +VF  +  
Sbjct: 159 NTLVNGYCKLGYVVEAKQYVTWLIQAGCDPDYFTYTSFITGHCRRKEVDAAFKVFKEMTQ 218

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQG 294
               R    Y  L+ G    ++ DEA SLL +M+DD   P  R   V ++ +   G    
Sbjct: 219 NGCHRNEVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNVRTYTVLIDALCGSGQKSE 278

Query: 295 ANEFLREML-----PDKRIKNVRYYEDGSDDDEDE 324
           A    ++M      PD  +  V      S D  DE
Sbjct: 279 AMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDE 313



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 106/241 (43%), Gaps = 24/241 (9%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           D+Y    ++    + G+V    + +  L   G    + T    I  +   K+ DAA K F
Sbjct: 154 DIYTFNTLVNGYCKLGYVVEAKQYVTWLIQAGCDPDYFTYTSFITGHCRRKEVDAAFKVF 213

Query: 465 HD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
            +  +  C      +  + Y+ L+  L + K+  +A+++L +M      P+V+T++ L+ 
Sbjct: 214 KEMTQNGC-----HRNEVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNVRTYTVLID 268

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMP 571
                G +     LF  + ++G++PD  M+ VLIQ++C            +++  + LMP
Sbjct: 269 ALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHMLENGLMP 328

Query: 572 DAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWA--VSSADLTRVHSIY 629
           +  T   L K   K+   K    + +  E+ N VP L     + A   SS +L    S Y
Sbjct: 329 NVITYNALIKGFCKKNVHKAMGLLSKMLEQ-NLVPDLITYNTLIAGQCSSGNL---DSAY 384

Query: 630 R 630
           R
Sbjct: 385 R 385



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 57/125 (45%)

Query: 190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV 249
           EA+    ++ D+   PN RTYTV+I+ L   G+   A+ +F  +    IK     Y +L+
Sbjct: 243 EALSLLVKMKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLI 302

Query: 250 EGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIK 309
           + F   +  DEA  LL  M ++G  P      AL +      +  A   L +ML    + 
Sbjct: 303 QSFCSGDTLDEASGLLEHMLENGLMPNVITYNALIKGFCKKNVHKAMGLLSKMLEQNLVP 362

Query: 310 NVRYY 314
           ++  Y
Sbjct: 363 DLITY 367



 Score = 42.4 bits (98), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 82/182 (45%), Gaps = 24/182 (13%)

Query: 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRL-IAKLRSDGMRLPFSTI 444
           P+TA  F  W++  P + H+V +   ++T+L        V ++ I  ++S       +++
Sbjct: 40  PQTALSFSDWISRIPNFKHNVTSYASLVTLLCSQEIPYEVPKITILMIKS------CNSV 93

Query: 445 R---LIIDFYGISKKADAALKAFHDDRTLCGPISKFKLML-LYSSLLRTLTKCKRDFDAI 500
           R    ++DF    +K D+    F           K+KL    Y++LL +L +     +  
Sbjct: 94  RDALFVVDFCRTMRKGDS----FE---------IKYKLTPKCYNNLLSSLARFGLVEEMK 140

Query: 501 NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
            +  EM+   + PD+ TF+ L+  +   G     ++  + + Q G +PD + +   I  +
Sbjct: 141 RLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEAKQYVTWLIQAGCDPDYFTYTSFITGH 200

Query: 561 CK 562
           C+
Sbjct: 201 CR 202


>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 83/442 (18%), Positives = 182/442 (41%), Gaps = 37/442 (8%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L K  R+ E   +   +++       V +  L+  Y+T G    ++S +N  +    + +
Sbjct: 231 LCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVAN 290

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
              + I++  YAK G   EA+    ++  +G  P+  TY+ +I  L  +G+L  A++ F+
Sbjct: 291 CLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFN 350

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGF 291
            +    ++  +  Y  L++GF       +AK L+ EM ++G          + R     F
Sbjct: 351 QMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNG----------IPRPNIAFF 400

Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALAN 351
               N  +  +  + R+ +  +  D   D  + +D       I +   +  +     +  
Sbjct: 401 ----NSIVHSICKEGRVMDAHHIFDLVKDIGERSD------IIMFNTLIDGYCLVGEMGK 450

Query: 352 TLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSP--ETAWHFFCWVA---YQPGYTHDV 406
                   + + +    F + T     V  +FKS   +   + F  ++    +P  T   
Sbjct: 451 AFSVLDAMISAGIGPDTFTYNTL----VNGYFKSGRIDDGLNLFREMSDKKIKP--TTVT 504

Query: 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD 466
           Y +  +L  L R G      +++ ++   G  +   T  +I+     +   D A+  F  
Sbjct: 505 YNI--ILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMF-- 560

Query: 467 DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
            + LC    KF +  L ++++ ++   +R  +A ++   +  SG+VP+  T+  ++ +  
Sbjct: 561 -QKLCTMNVKFNITTL-NTMINSMYTVQRREEAKDLFSAISDSGLVPNASTYGIMIRNLL 618

Query: 527 LQGDEKIVQKLFSMVRQNGVEP 548
            +G  +    +FS + ++G  P
Sbjct: 619 KEGSVEEADNMFSSMEKSGCAP 640



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 4/180 (2%)

Query: 96  PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLEL 155
           P+   + S ++AL    A++  N EL  L+  +  +      V + +++  YST G  E 
Sbjct: 149 PDVVTHNSIINALCK--ARAVDNAEL--LLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEE 204

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
               + E   R  +    S+N  M    K G++ EA E F  +  +G  PN  TY +++ 
Sbjct: 205 ATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLH 264

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                G     +  F+ +    I      + IL++ +      DEA  +L+EM+  G  P
Sbjct: 265 GYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSP 324



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 89/206 (43%), Gaps = 16/206 (7%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           Q G+  DV     ++  L +   V+  + L+ ++  +G+     T   +I  Y    + +
Sbjct: 144 QQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWE 203

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
            A K F +  T  G I     ++ ++S + +L K  R  +A  +   M   G  P++ T+
Sbjct: 204 EATKMFRE-MTGRGLIPD---IVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTY 259

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSN 566
             L++ +A +G    +   F+ ++ +G+  +  +F +LI AY K             +  
Sbjct: 260 GILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQG 319

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEA 592
             L PD  T   L  +L + GR  +A
Sbjct: 320 QGLSPDVFTYSTLISALCRMGRLADA 345



 Score = 46.6 bits (109), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 70/172 (40%), Gaps = 26/172 (15%)

Query: 454 SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP 513
           S++A   L+    +  +C P      ++ Y++++    K  +   A N+  EM+  G VP
Sbjct: 95  SQQALDLLRMMAKEEGVCSPD-----VVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVP 149

Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------ 561
           DV T + ++            + L   +  NGV P+   +  +I  Y             
Sbjct: 150 DVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMF 209

Query: 562 KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGH 613
           + ++   L+PD  +      SL K GR KEAA +           S+A +GH
Sbjct: 210 REMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEI---------FYSMAAKGH 252



 Score = 45.8 bits (107), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 44/205 (21%), Positives = 86/205 (41%), Gaps = 17/205 (8%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D+ +    +  L +HG  +    +   + + G R    T  +++  Y  ++   A 
Sbjct: 216 GLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYA-TEGCFAD 274

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           + +F +     G ++     L+++ L+    K     +A+ +L EM   G+ PDV T+S 
Sbjct: 275 MMSFFNTMKGDGIVAN---CLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYST 331

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY-------------LSNS 567
           L+      G        F+ +   GV+P+  ++  LIQ +C +             ++N 
Sbjct: 332 LISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNG 391

Query: 568 NLMPDAATKELLKKSLWKEGRRKEA 592
              P+ A    +  S+ KEGR  +A
Sbjct: 392 IPRPNIAFFNSIVHSICKEGRVMDA 416



 Score = 42.0 bits (97), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 54/249 (21%), Positives = 99/249 (39%), Gaps = 23/249 (9%)

Query: 69  PFIVTH-----ALRSAPNADSALSIMEALKSN---PNFSHNQSTLHALATV-----LAKS 115
           P +VTH     AL  A   D+A  ++  +  N   PN     S +H  +T+       K 
Sbjct: 149 PDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKM 208

Query: 116 QRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
            R    + LI DI S        +FM+ +  +  S +   +  +      R  +++   Y
Sbjct: 209 FREMTGRGLIPDIVSWN------SFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVT---Y 259

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
            I++  YA  G   + +  F  +  +G + N   +T++I+     G +D A+ + S +  
Sbjct: 260 GILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQG 319

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQG 294
             +      Y  L+     + R  +A    N+M   G  P   +  +L +     G +  
Sbjct: 320 QGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVK 379

Query: 295 ANEFLREML 303
           A E + EM+
Sbjct: 380 AKELVYEMM 388



 Score = 39.7 bits (91), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 42/219 (19%), Positives = 89/219 (40%), Gaps = 2/219 (0%)

Query: 85  ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
           A S+++A+ S      +  T + L     KS R  +   L  ++S  K    +V +  ++
Sbjct: 451 AFSVLDAMIS-AGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIIL 509

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204
                +G         +E       +S  +YNI++    +     EA+  F+++      
Sbjct: 510 DGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMNVK 569

Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL 264
            N  T   MI  +  + + + A ++FSA+    +   +  Y I++   +     +EA ++
Sbjct: 570 FNITTLNTMINSMYTVQRREEAKDLFSAISDSGLVPNASTYGIMIRNLLKEGSVEEADNM 629

Query: 265 LNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREM 302
            + M   G  P  R +   +  + E G I  A  ++ ++
Sbjct: 630 FSSMEKSGCAPCSRLLNDTIRTLLEKGEIVKAGNYMSKV 668



 Score = 39.7 bits (91), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 22/93 (23%), Positives = 43/93 (46%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  ++  +   G +    + ++E  Q+  +    ++N +++   K      A    RQ
Sbjct: 117 VTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQ 176

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           ++D G  PN  TYT MI     LG+ + A ++F
Sbjct: 177 MVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMF 209


>gi|218194637|gb|EEC77064.1| hypothetical protein OsI_15455 [Oryza sativa Indica Group]
          Length = 864

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 99/226 (43%), Gaps = 18/226 (7%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D++    ++  L +   ++  +R++ ++   G R    T   +I  Y IS   + +
Sbjct: 255 GIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNES 314

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           ++ F    + CG I         +S +  L K  R  +A  + + M+  G  PD+ ++S 
Sbjct: 315 VRVF-KQMSSCGVIPTVDNC---NSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYST 370

Query: 521 LMYHFALQGDEKI--VQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSN 566
           +++ +A   D  +  V  +F+++   G+ P+ ++F +LI AY +             + N
Sbjct: 371 MLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQN 430

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRG 612
             ++PD  T   +  SL + GR  +A         I   PS A+ G
Sbjct: 431 KGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYG 476



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 88/184 (47%), Gaps = 7/184 (3%)

Query: 96  PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD--L 153
           P   +  S +HAL     K  R +E K +   +         +++  ++  Y+T+ D  L
Sbjct: 328 PTVDNCNSFIHALF----KHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCL 383

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
             V + +N    +    +   +NI+++ YA+ G   +A+  F  + ++G IP++ T+  +
Sbjct: 384 ADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATV 443

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD-DG 272
           I  L  +G+LD AL  F+ +  + +  +   Y  L++G        +AK L++EM + D 
Sbjct: 444 ISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDI 503

Query: 273 KFPG 276
             PG
Sbjct: 504 PPPG 507



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 45/80 (56%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           +SS++  L K  R  +  ++++ M+ +G  P+V TF+ LM  + L G+ +    L   + 
Sbjct: 511 FSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMA 570

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
             G+EP+ Y++  L+  YCK
Sbjct: 571 SIGIEPNCYIYGTLVDGYCK 590



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 26/176 (14%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS----GLMYHFALQGDEKIVQ 535
           +L+ +S+++ L K K    A +++++M+ SGI PD+ T+S    GL    A+   E++++
Sbjct: 225 ILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLE 284

Query: 536 KLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSL 583
           ++     + G  P++  +  LI  Y             K +S+  ++P          +L
Sbjct: 285 QMV----EAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHAL 340

Query: 584 WKEGRRKEAAAVEERCEKINDVP-----SLALRGHIWAVSSADLTRVHSIYRNSIT 634
           +K GR  EA  + +        P     S  L G+  A  S  L  VH+I+   +T
Sbjct: 341 FKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSC-LADVHNIFNLMLT 395



 Score = 43.5 bits (101), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 93/456 (20%), Positives = 164/456 (35%), Gaps = 52/456 (11%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN ++  Y+ +G   E+V  F+Q+   G IP        I  L   G+ + A  +F ++
Sbjct: 297 TYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSM 356

Query: 234 PLMRIKRTSKQYLILVEGFVGV--ERFDEAKSLLNEMRDDGKFPGR-------------- 277
            L   K     Y  ++ G+         +  ++ N M   G  P +              
Sbjct: 357 VLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCG 416

Query: 278 ----AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVR 333
               AM +  E MQ  G I     F   +    RI  +   +D         D       
Sbjct: 417 MMDKAMLI-FEDMQNKGMIPDTVTFATVISSLCRIGRL---DDALHKFNHMVDIGVPPSE 472

Query: 334 IAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFF 393
             YG  ++   +   L    +  S  +   +      + + ++  + +  +  E      
Sbjct: 473 AVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMD 532

Query: 394 CWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGI 453
             V  Q G   +V     ++      G++E    L+  + S G+         ++D Y  
Sbjct: 533 MMV--QTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCK 590

Query: 454 SKKADAALKAFHDD-RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV 512
           + + D AL  F D       P S     +LYS +L  L + +R   A  +  EMI SG  
Sbjct: 591 NGRIDDALTVFRDMLHKGVKPTS-----VLYSIILHGLFQARRTTAAKKMFHEMIESGTT 645

Query: 513 PDVQTF----SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY----- 563
             + T+     GL  +        +++KLF+M     V+ D   F ++I A  K      
Sbjct: 646 VSIHTYGVVLGGLCRNNCTDEANMLLEKLFAM----NVKFDIITFNIVISAMFKVGRRQE 701

Query: 564 -------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                  +S   L+P+  T  ++  +L KE   +EA
Sbjct: 702 AKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEA 737


>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
          Length = 676

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 84/201 (41%), Gaps = 1/201 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A  +M  +K    F  N  T +A+     K  +  E   ++   +S       V +  
Sbjct: 374 DRAFELMNKMKLE-GFLPNIYTYNAIIGGFCKKGKIQEAYKVLRMATSQGLHLDKVTYTI 432

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  +   G +   L  + +  +++      +Y  ++++Y +  +  ++ + F + +  G
Sbjct: 433 LITEHCKQGHITCALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSIG 492

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +P  +TYT MI     LGKL SAL+VF  +        S  Y  L+       R +EA+
Sbjct: 493 LVPTKQTYTSMIAGYCRLGKLTSALKVFERMVQHGCLPDSITYGALISSLCKESRLEEAR 552

Query: 263 SLLNEMRDDGKFPGRAMRVAL 283
           +L   M D    P    RV L
Sbjct: 553 ALFETMLDKHLVPCDVTRVTL 573



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 77/186 (41%), Gaps = 7/186 (3%)

Query: 89  MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG-DISSSKFLNVS-VNFMNLMQW 146
           M  + + PN  +  + +  L       Q  H L+ ++G  +  + + + S ++ +  + W
Sbjct: 242 MSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGW 301

Query: 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206
              +  L L L   + Y+      +  +Y +++  Y K GK   A     +++++G  PN
Sbjct: 302 MERAFRLFLKLVKSSSYKP-----NVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPN 356

Query: 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
           + TYT +I      G  D A E+ + + L         Y  ++ GF    +  EA  +L 
Sbjct: 357 TNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKVLR 416

Query: 267 EMRDDG 272
                G
Sbjct: 417 MATSQG 422



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 74/165 (44%), Gaps = 9/165 (5%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D  +   ++    R G  E  D L+A + + G  L  +T  +++  +    +    
Sbjct: 176 GVRPDHRSFRALVLGCCREGRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNV 235

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDF--DAINVLEEMIFSGIVPDVQTF 518
              F     +  P +    M+ YS+ +  L  C+R +   A +VLEEM+  G+ P+V T 
Sbjct: 236 TDLFRRMSEMGTPPN----MVNYSAWIDGL--CERGYVKQAFHVLEEMVGKGLKPNVYTH 289

Query: 519 SGLMYHFALQG-DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           + L+      G  E+  +    +V+ +  +P+ + + V+I  YCK
Sbjct: 290 TSLIDGLCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCK 334



 Score = 42.4 bits (98), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 28/151 (18%), Positives = 59/151 (39%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           + A  +   L  + ++  N  T   +     K  +    + L+G +        +  +  
Sbjct: 303 ERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTT 362

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  +   G  +      N+ +    L +  +YN ++  + K GK  EA +  R    +G
Sbjct: 363 LIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKVLRMATSQG 422

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
              +  TYT++I      G +  AL++F  +
Sbjct: 423 LHLDKVTYTILITEHCKQGHITCALDLFKQM 453



 Score = 39.3 bits (90), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 30/163 (18%), Positives = 70/163 (42%), Gaps = 6/163 (3%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G+  ++Y    ++    + G ++   +++    S G+ L   T  ++I  +        A
Sbjct: 387 GFLPNIYTYNAIIGGFCKKGKIQEAYKVLRMATSQGLHLDKVTYTILITEHCKQGHITCA 446

Query: 461 LKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           L  F       C P      +  Y++++    + ++   +  + ++ +  G+VP  QT++
Sbjct: 447 LDLFKQMAEKSCHPD-----IHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYT 501

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            ++  +   G      K+F  + Q+G  PD+  +  LI + CK
Sbjct: 502 SMIAGYCRLGKLTSALKVFERMVQHGCLPDSITYGALISSLCK 544


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 90/415 (21%), Positives = 166/415 (40%), Gaps = 62/415 (14%)

Query: 165 QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
           ++  + +T +Y I+ +   +  +  EA  TF ++   G  P+    + +I+  +  G +D
Sbjct: 3   EKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDID 62

Query: 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVAL 283
             L +   +    I      Y +L+ G     + ++A  +L  M   G  P  R   + +
Sbjct: 63  EVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLI 122

Query: 284 E---RMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQL 340
           E   R   MG    A E L EM  +KR                    N     ++YG  +
Sbjct: 123 EGYCREHNMGR---ALELLDEM--EKR--------------------NLVPSAVSYGAMI 157

Query: 341 KPWLDPK--ALANTLDE------WSPEVVSLLADAKFVWTTRLVCKVLRHFKSP---ETA 389
                 K  +LAN L E        P VV        V++T     ++  + S    E A
Sbjct: 158 NGLCHCKDLSLANKLLEKMTFSGLKPNVV--------VYST-----LIMGYASEGRIEEA 204

Query: 390 WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID 449
                 ++   G   D++    +++ L++ G +E     + +++  G++    T    I 
Sbjct: 205 RRLLDGMSCS-GVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFIL 263

Query: 450 FYGISKKADAALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMI 507
            Y  + K   A K F +  D  L  P +      LY+ L+    K     +A+++   + 
Sbjct: 264 GYSKTGKMTEAAKYFDEMLDHGLM-PNNP-----LYTVLINGHFKAGNLMEALSIFRHLH 317

Query: 508 FSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
             G++PDVQT S  ++     G  +   K+FS +++ G+ PD + +  LI  +CK
Sbjct: 318 ALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCK 372



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 84/193 (43%), Gaps = 3/193 (1%)

Query: 86  LSIMEALKSNPNFSHNQSTLHALATVL---AKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           LS+   L     FS  +  +   +T++   A   R  E + L+  +S S        +  
Sbjct: 166 LSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNA 225

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           ++   S +G +E   +   E + R       ++   +  Y+KTGK  EA + F +++D G
Sbjct: 226 IISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHG 285

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +PN+  YTV+I      G L  AL +F  L  + +    +     + G +   R  EA 
Sbjct: 286 LMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEAL 345

Query: 263 SLLNEMRDDGKFP 275
            + +E+++ G  P
Sbjct: 346 KVFSELKEKGLVP 358



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 75/155 (48%), Gaps = 1/155 (0%)

Query: 150 SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRT 209
           +G ++  L  ++E +++  +    +Y+ ++S + K G+  +A E   ++  +G  PN   
Sbjct: 338 NGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFI 397

Query: 210 YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
           Y  +++ L   G +  A ++F  +P   ++  S  Y  +++G+   E   EA SL +EM 
Sbjct: 398 YNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMP 457

Query: 270 DDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREML 303
             G  P   +  AL     + G ++ A    REML
Sbjct: 458 SKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREML 492



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 41/80 (51%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YSSL+    K      A  + +EM   GI P++  ++ L+      GD +  +KLF  + 
Sbjct: 363 YSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMP 422

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
           + G+EPD+  +  +I  YCK
Sbjct: 423 EKGLEPDSVTYSTMIDGYCK 442



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 20/166 (12%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y +++  L  CK    A  +LE+M FSG+ P+V  +S L+  +A +G  +  ++L   + 
Sbjct: 153 YGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMS 212

Query: 543 QNGVEPDAYMFKVLIQAYCK---------YL---SNSNLMPDAATKELLKKSLWKEGRRK 590
            +GV PD + +  +I    K         YL       L PDA T         K G+  
Sbjct: 213 CSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMT 272

Query: 591 EAAA-----VEERCEKINDVPSLALRGHIWAVSSADLTRVHSIYRN 631
           EAA      ++      N + ++ + GH  A    +L    SI+R+
Sbjct: 273 EAAKYFDEMLDHGLMPNNPLYTVLINGHFKA---GNLMEALSIFRH 315



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 104/523 (19%), Positives = 193/523 (36%), Gaps = 93/523 (17%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  +   GD++ VL   +        ++  +YN+++    K GK  +A E  + +I  G
Sbjct: 51  LIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLG 110

Query: 203 AIPNSRTYTVMIEHLV---NLGK--------------------------------LDSAL 227
             PNSRT+ ++IE      N+G+                                L  A 
Sbjct: 111 CKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLAN 170

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERM 286
           ++   +    +K     Y  L+ G+    R +EA+ LL+ M   G  P        +  +
Sbjct: 171 KLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCL 230

Query: 287 QEMGFIQGANEFL-----REMLPD---------------KRIKNVRYYEDGSDDDEDEND 326
            + G ++ A+ +L     R + PD               K  +  +Y+++  D     N+
Sbjct: 231 SKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNN 290

Query: 327 DNNSGVRIAYGVQLKPWLDPKALANTLDEWSP-EVVSLLADAKFVWTTRLVCKVLRHFKS 385
                    Y V +        L   L  +     + +L D +    +  +  +L++ + 
Sbjct: 291 P-------LYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQ--TCSAFIHGLLKNGRV 341

Query: 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR 445
            E A   F  +  + G   DV+    +++   + G VE    L  ++   G+        
Sbjct: 342 QE-ALKVFSELK-EKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYN 399

Query: 446 LIIDFYGISKKADA--ALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAIN 501
            ++D  G+ K  D   A K F    ++ L  P S     + YS+++    K +   +A +
Sbjct: 400 ALVD--GLCKSGDIQRARKLFDGMPEKGL-EPDS-----VTYSTMIDGYCKSENVAEAFS 451

Query: 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           +  EM   G+ P    ++ L++    +GD +    LF  + Q G       F  LI  YC
Sbjct: 452 LFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDGYC 510

Query: 562 KY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           K             +    +MPD  T   +     K G+ +EA
Sbjct: 511 KSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEA 553



 Score = 46.6 bits (109), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 93/228 (40%), Gaps = 7/228 (3%)

Query: 79  APNADSALSI---MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLN 135
           A N   ALSI   + AL   P+     + +H L     K+ R  E   +  ++     + 
Sbjct: 303 AGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLL----KNGRVQEALKVFSELKEKGLVP 358

Query: 136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF 195
               + +L+  +   G++E      +E   +    +   YN ++    K+G    A + F
Sbjct: 359 DVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLF 418

Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
             + ++G  P+S TY+ MI+       +  A  +F  +P   ++  S  Y  LV G    
Sbjct: 419 DGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKE 478

Query: 256 ERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREML 303
              ++A +L  EM   G     +    ++   +   IQ A++  +EM+
Sbjct: 479 GDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMI 526



 Score = 45.4 bits (106), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 1/121 (0%)

Query: 113 AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
            KS+   E  +L  ++ S      S  +  L+      GD+E  ++ + E  Q+    +T
Sbjct: 441 CKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG-FATT 499

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            S+N ++  Y K+ K  EA + F+++I +  +P+  TYT +I+     GK++ A  +F  
Sbjct: 500 LSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKE 559

Query: 233 L 233
           +
Sbjct: 560 M 560



 Score = 44.3 bits (103), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 80/196 (40%), Gaps = 16/196 (8%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           M+  L     + L ++L+ K+   G++        +I  Y    + + A +    D   C
Sbjct: 156 MINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLL--DGMSC 213

Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
             ++    +  Y++++  L+K  +  +A   L E+   G+ PD  TF   +  ++  G  
Sbjct: 214 SGVAPD--IFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKM 271

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELL 579
               K F  +  +G+ P+  ++ VLI  + K            +L    ++PD  T    
Sbjct: 272 TEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAF 331

Query: 580 KKSLWKEGRRKEAAAV 595
              L K GR +EA  V
Sbjct: 332 IHGLLKNGRVQEALKV 347



 Score = 40.4 bits (93), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 12/137 (8%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ +   L + KR  +A    EEM  +G+ PD    S L+  F  +GD   V ++  ++ 
Sbjct: 13  YTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMV 72

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
             G+  +   + VLI   CK+            +      P++ T  LL +   +E    
Sbjct: 73  SCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMG 132

Query: 591 EAAAVEERCEKINDVPS 607
            A  + +  EK N VPS
Sbjct: 133 RALELLDEMEKRNLVPS 149


>gi|242074342|ref|XP_002447107.1| hypothetical protein SORBIDRAFT_06g028710 [Sorghum bicolor]
 gi|241938290|gb|EES11435.1| hypothetical protein SORBIDRAFT_06g028710 [Sorghum bicolor]
          Length = 363

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 78/175 (44%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           +  + + L   L +  +  E  +L+ ++           +   M +      ++     +
Sbjct: 176 DTCSFNILVKGLCQCSKFDEAISLLHEMPKQGCQPNVATYSTFMHFLCQRSLVDKAFELF 235

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
              R++     T  YNI++S   +  +  EA + F+ +  EG  PNS TY V+++ L++L
Sbjct: 236 ERMRKQDIAADTVVYNILISGLCREERVSEAFDLFKSMTSEGCYPNSGTYQVLLDGLISL 295

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           GK   A  + S +    ++ + + Y +L++G    +  D+A  +L +M   G  P
Sbjct: 296 GKFFEAKSLVSTMSTEGVRPSFQSYKLLIDGLCSEDCVDDAHLVLKQMVGQGFVP 350



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 1/138 (0%)

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           E+V   ++   +    L T S+NI++    +  K  EA+    ++  +G  PN  TY+  
Sbjct: 159 EVVHEIYSSAPRLGVTLDTCSFNILVKGLCQCSKFDEAISLLHEMPKQGCQPNVATYSTF 218

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           +  L     +D A E+F  +    I   +  Y IL+ G    ER  EA  L   M  +G 
Sbjct: 219 MHFLCQRSLVDKAFELFERMRKQDIAADTVVYNILISGLCREERVSEAFDLFKSMTSEGC 278

Query: 274 FPGRAM-RVALERMQEMG 290
           +P     +V L+ +  +G
Sbjct: 279 YPNSGTYQVLLDGLISLG 296



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 64/128 (50%), Gaps = 4/128 (3%)

Query: 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE-AVETFRQVIDEGAIPNSRTY 210
           D+E +LS     + R    S E +  ++ +Y    ++ + A++T   +      P+++T+
Sbjct: 89  DVEELLSKAKTEKLR---FSDEFFYRLIKMYGNVAEHPQKAIDTLFAMPGYNCWPSTKTF 145

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
             ++  LV   + +   E++S+ P + +   +  + ILV+G     +FDEA SLL+EM  
Sbjct: 146 NYVLHMLVCKRQYEVVHEIYSSAPRLGVTLDTCSFNILVKGLCQCSKFDEAISLLHEMPK 205

Query: 271 DGKFPGRA 278
            G  P  A
Sbjct: 206 QGCQPNVA 213



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 18/128 (14%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK---LFS 539
           ++ L++ L +C +  +AI++L EM   G  P+V T+S  M HF  Q    +V K   LF 
Sbjct: 180 FNILVKGLCQCSKFDEAISLLHEMPKQGCQPNVATYSTFM-HFLCQ--RSLVDKAFELFE 236

Query: 540 MVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEG 587
            +R+  +  D  ++ +LI   C            K +++    P++ T ++L   L   G
Sbjct: 237 RMRKQDIAADTVVYNILISGLCREERVSEAFDLFKSMTSEGCYPNSGTYQVLLDGLISLG 296

Query: 588 RRKEAAAV 595
           +  EA ++
Sbjct: 297 KFFEAKSL 304


>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
 gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
          Length = 595

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y +L+R L        A+ +L+EM  SG+ P+V  +S L+  +   G  + V K+F  + 
Sbjct: 161 YGTLIRGLCDASELDAALELLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMS 220

Query: 543 QNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRK 590
           + G++PD  MF  LI   CK             +    L P+  T  +L  SL KEG  +
Sbjct: 221 RRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVR 280

Query: 591 EA 592
           EA
Sbjct: 281 EA 282



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 4/135 (2%)

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLL 487
           L+  +++ G+R    T   +I     + + DAAL+   +   +CG   +  + ++YS LL
Sbjct: 145 LLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDE---MCGSGVQPNV-VVYSCLL 200

Query: 488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE 547
           R   +  R  D   V E+M   GI PDV  F+GL+     +G      K+  M+ Q G+E
Sbjct: 201 RGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLE 260

Query: 548 PDAYMFKVLIQAYCK 562
           P+   + VLI + CK
Sbjct: 261 PNVVTYNVLINSLCK 275



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 12/127 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++++R L   +R  +A+ +L  M  SG+  DV T+  L+       +     +L   + 
Sbjct: 126 YTTVMRGLCASRRTGEAVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEMC 185

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
            +GV+P+  ++  L++ YC+             +S   + PD      L   L KEG+  
Sbjct: 186 GSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTG 245

Query: 591 EAAAVEE 597
           +AA V++
Sbjct: 246 KAAKVKD 252



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 59/145 (40%)

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L+ ++  S      V +  L++ Y  SG  + V   + +  +R        +  ++    
Sbjct: 180 LLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLC 239

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           K GK  +A +    ++  G  PN  TY V+I  L   G +  AL +   +    +     
Sbjct: 240 KEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVV 299

Query: 244 QYLILVEGFVGVERFDEAKSLLNEM 268
            Y  L+ G  GV   DEA S L EM
Sbjct: 300 TYNTLIAGLSGVLEMDEAMSFLEEM 324



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 2/174 (1%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T + L   L K     E  TL  ++         V +  L+   S   +++  +S  
Sbjct: 262 NVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFL 321

Query: 161 NEYRQRAKLLSTE--SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
            E  Q   ++  +  ++N V+    K G+  +AV+    + + G + N  TY  +I   +
Sbjct: 322 EEMIQGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFL 381

Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
            + K+  A+ +   L +  ++  S  Y IL+ GF  +   D A+  L  MR  G
Sbjct: 382 RVHKVKMAMNLMDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRG 435



 Score = 42.4 bits (98), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 28/131 (21%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
           +++ L+      G +E  +  +NE  +   L +  +Y+ ++    K+G      +  + +
Sbjct: 442 HYIPLLAAMCQQGMMERAMGLFNEMDKNCGLDAI-AYSTMIHGACKSGDMKTVKQLIQDM 500

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
           +DEG  P++ TY+++I     LG L+ A  V   +           +  L++G+    + 
Sbjct: 501 LDEGLAPDAVTYSMLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLIKGYSAEGQT 560

Query: 259 DEAKSLLNEMR 269
           D+   L++EMR
Sbjct: 561 DKVLKLIHEMR 571



 Score = 39.7 bits (91), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 40/78 (51%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS+++    K         ++++M+  G+ PD  T+S L+  +A  GD +  +++   + 
Sbjct: 477 YSTMIHGACKSGDMKTVKQLIQDMLDEGLAPDAVTYSMLINMYAKLGDLEEAERVLKQMT 536

Query: 543 QNGVEPDAYMFKVLIQAY 560
            +G  PD  +F  LI+ Y
Sbjct: 537 ASGFVPDVAVFDSLIKGY 554



 Score = 38.9 bits (89), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 37/64 (57%)

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A+N+++E+  SG+ PD  T+S L+  F+   +    +K    +RQ G++ + + +  L+ 
Sbjct: 389 AMNLMDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLA 448

Query: 559 AYCK 562
           A C+
Sbjct: 449 AMCQ 452


>gi|302781494|ref|XP_002972521.1| hypothetical protein SELMODRAFT_52385 [Selaginella moellendorffii]
 gi|300159988|gb|EFJ26607.1| hypothetical protein SELMODRAFT_52385 [Selaginella moellendorffii]
          Length = 450

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 50/99 (50%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y +++    K G+  EA E F  +I     P + TY  +I  L  +G ++ ALE+F  +
Sbjct: 320 TYWVIIDGLGKAGRGLEADEVFSDMIRGDVSPQTVTYNALISGLCRIGCVERALELFREM 379

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           P    +  S  Y  L++G    ER D+A +LL E  + G
Sbjct: 380 PQRECRPDSASYGALLDGICKAERADDAVTLLREASESG 418



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 102/454 (22%), Positives = 172/454 (37%), Gaps = 38/454 (8%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           S N ++    + G++ +A   F++       PN+ TYTV++  L + G++D A EVF+ +
Sbjct: 8   SANQLLETLVRCGRSMDAYGIFKR-FSRMFKPNAFTYTVLVRGLCDAGRIDEACEVFNEM 66

Query: 234 P-LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFI 292
                I+  +  Y +L+ G +   + D+A S    M++  +         +  +   G +
Sbjct: 67  QGRGGIEAKTAIYSVLLNGLLRSGKLDDAFSYYQMMQETCQPDSSTYSTMIYELSRQGRL 126

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSD--DDEDENDDNNSGVRIAYGVQLKPWLDPKAL- 349
             A +  +EM+   +I ++       +         D    +R+      KP   P    
Sbjct: 127 DHATKVAQEMVDKDKIPDMPCLGVALEILCRCGRVSDAWKLLRMMKEKHFKPDAVPHTYV 186

Query: 350 ------ANTLDEWSPEVVSLLADAK----FVWTTRLVCKVLRHFKSPETAWHFFCWVAYQ 399
                 A  LDE       +  + K    FV T  ++   L   +  + AW F   +  +
Sbjct: 187 LRKFCEAGRLDEALKGFEEMTGNEKCEPDFV-TYSVIMDGLCSAQRLDDAWKFMEKMVAK 245

Query: 400 PGYTHDVYALEKMLTILARHGHVELV-DRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
            G   DV       +++  H    LV DR   KL  DG R   +     +  YG+ +K  
Sbjct: 246 -GRMPDVRTFR---SLVESHSKPRLVEDR--GKL-EDGKRAKPTATMYTLLLYGLLRKGR 298

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
           A        + L G  S     L Y  ++  L K  R  +A  V  +MI   + P   T+
Sbjct: 299 AGEAMELYQQVLSG--STRPSFLTYWVIIDGLGKAGRGLEADEVFSDMIRGDVSPQTVTY 356

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSN 566
           + L+      G  +   +LF  + Q    PD+  +  L+   CK              S 
Sbjct: 357 NALISGLCRIGCVERALELFREMPQRECRPDSASYGALLDGICKAERADDAVTLLREASE 416

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEAAAVEERCE 600
           S +  D A  E +   L   GR  EA  V  R E
Sbjct: 417 SGVEIDVAVHEAVVAMLKSTGRVSEAENVTARME 450


>gi|255685750|gb|ACU28364.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
          Length = 178

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 54/98 (55%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           Y +++  YAK+G   +A+   +++IDEG  P+  TY+V++  L   G+++ AL+ F    
Sbjct: 24  YTVLIDGYAKSGSVEDAIRLLQRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFKTCR 83

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
              +   S  Y  L++G   V R DEA+ L  EM + G
Sbjct: 84  FNGLAINSMFYSSLIDGLGKVGRVDEAERLFEEMSEKG 121



 Score = 46.2 bits (108), Expect = 0.049,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 1/137 (0%)

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
           NV++ +  L+  Y+ SG +E  +                +Y++V++   K G+  EA++ 
Sbjct: 20  NVAI-YTVLIDGYAKSGSVEDAIRLLQRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDY 78

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
           F+     G   NS  Y+ +I+ L  +G++D A  +F  +      R S  Y  L++ F  
Sbjct: 79  FKTCRFNGLAINSMFYSSLIDGLGKVGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTK 138

Query: 255 VERFDEAKSLLNEMRDD 271
             + +EA +L   M ++
Sbjct: 139 HGKVNEAVALFKRMEEE 155



 Score = 40.8 bits (94), Expect = 2.5,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 5/151 (3%)

Query: 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK 476
           A+ G VE   RL+ ++  +G +    T  ++++    + + + AL  F   R     I+ 
Sbjct: 32  AKSGSVEDAIRLLQRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFKTCRFNGLAINS 91

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
               + YSSL+  L K  R  +A  + EEM   G   D   ++ L+  F   G       
Sbjct: 92  ----MFYSSLIDGLGKVGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVNEAVA 147

Query: 537 LFS-MVRQNGVEPDAYMFKVLIQAYCKYLSN 566
           LF  M  + G +   Y + +LI    K   N
Sbjct: 148 LFKRMEEEEGCDQTVYTYTILISGMFKEHRN 178


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 1/151 (0%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+      GDLE   +  +E   +       +YNI++      G+  +A+    ++  +G
Sbjct: 382 LIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKG 441

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  TY  MI+     G L +AL + S +  +        Y +L++GF   ++ ++A 
Sbjct: 442 LKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDAN 501

Query: 263 SLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
            LLNEM + G  P R    +  E M E GF+
Sbjct: 502 GLLNEMLEKGLIPNRMTYEIVTEEMMEKGFV 532



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 85/185 (45%), Gaps = 18/185 (9%)

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPI 474
           + + G +   D ++ ++R+DG+     T  ++ID +   K   AA+K F + +R    P 
Sbjct: 211 MGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPN 270

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
                ++ Y+SL+  L    +  +A  + ++M+ S + P++ T + L+  F      K  
Sbjct: 271 -----VVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQA 325

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKS 582
            +LF  + + G+ P+   + +LI AYCK             +    + PD +T   L   
Sbjct: 326 GELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAG 385

Query: 583 LWKEG 587
           L ++G
Sbjct: 386 LCRKG 390



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 73/399 (18%), Positives = 147/399 (36%), Gaps = 72/399 (18%)

Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           LS  S N +MS   K G+  +    ++++I     P   ++ ++I  L  +GKL+ A ++
Sbjct: 126 LSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDI 185

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFD---EAKSLLNEMRDDGKFPGRAMRVALERM 286
              + +  +      Y  L++G+  + +     +A ++L EMR DG  P           
Sbjct: 186 IEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICP----------- 234

Query: 287 QEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDP 346
                    NE    +L D   K                D N S     +    +  + P
Sbjct: 235 ---------NEVTFNILIDGFCK----------------DKNVSAAMKVFAEMNRQGVKP 269

Query: 347 KALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDV 406
             +      ++  +  L  + K    T L  +++     P    H               
Sbjct: 270 NVVT-----YNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITH--------------- 309

Query: 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD 466
                +L    ++  V+    L   +   G+    +T  ++ID Y   +  + A   +  
Sbjct: 310 ---NALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRI 366

Query: 467 --DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAI-NVLEEMIFSGIVPDVQTFSGLMY 523
              + +C  +S +  ++  + L R     K D +A  N++ EM    +  D+ T++ L+ 
Sbjct: 367 MLGKGVCPDVSTYNCLI--AGLCR-----KGDLEAARNLVSEMDTKHLKADLITYNILID 419

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
               +G+ K   +L   + + G++P    +  +I  YCK
Sbjct: 420 SLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCK 458



 Score = 46.6 bits (109), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 1/142 (0%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YNI++  Y K     +A   +R ++ +G  P+  TY  +I  L   G L++A  + S +
Sbjct: 343 TYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEM 402

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
               +K     Y IL++         +A  LL+EM   G  P +      ++   + G +
Sbjct: 403 DTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNL 462

Query: 293 QGANEFLREMLPDKRIKNVRYY 314
           + A     +M    R+ NV  Y
Sbjct: 463 RAALNLRSQMEKVGRLANVATY 484



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/82 (21%), Positives = 43/82 (52%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  ++  Y   G+L   L+  ++  +  +L +  +YN+++  + K  K  +A     +++
Sbjct: 449 YNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEML 508

Query: 200 DEGAIPNSRTYTVMIEHLVNLG 221
           ++G IPN  TY ++ E ++  G
Sbjct: 509 EKGLIPNRMTYEIVTEEMMEKG 530



 Score = 39.7 bits (91), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 12/139 (8%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+    K +   DA  +   M+  G+ PDV T++ L+     +GD +  + L S + 
Sbjct: 344 YNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMD 403

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
              ++ D   + +LI + C              +    L P   T   +     KEG  +
Sbjct: 404 TKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLR 463

Query: 591 EAAAVEERCEKINDVPSLA 609
            A  +  + EK+  + ++A
Sbjct: 464 AALNLRSQMEKVGRLANVA 482


>gi|18071423|gb|AAL58282.1|AC068923_24 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 952

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 95/212 (44%), Gaps = 15/212 (7%)

Query: 77  RSAPNADSALSIMEALKSNPN-FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLN 135
           R++   D  L  M  L   PN FS+N + L+ L     +SQ   EL  ++ D        
Sbjct: 137 RTSDAMDIVLRRMTELGCIPNVFSYN-NLLNGLCDE-NRSQEALELLHMMADDRGGGSPP 194

Query: 136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV------------YA 183
             V++  ++  +   GD +   ST++E   R  L    +Y+ +++             + 
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHC 254

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           K G+  E+ + F  ++  G  P+  TY+ +I+     GK+D A+++ S +  + +K  + 
Sbjct: 255 KEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTV 314

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            Y  L+ G+  + R ++A  L  EM   G  P
Sbjct: 315 TYSTLINGYCKISRMEDALVLFKEMESSGVSP 346



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 80/186 (43%), Gaps = 2/186 (1%)

Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI 177
           +  +K L G +S     N +V +  L+  Y     +E  L  + E           +YNI
Sbjct: 295 DEAMKLLSGMVSVGLKPN-TVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNI 353

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           ++    +T +   A E + ++ + G      TY +++  L      D AL++F  L LM 
Sbjct: 354 ILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMD 413

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGAN 296
           +K  ++ + I+++  + V R DEAK L      +G  P     R+  E +   G ++  +
Sbjct: 414 LKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELD 473

Query: 297 EFLREM 302
           +    M
Sbjct: 474 QLFLSM 479



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 84/195 (43%), Gaps = 34/195 (17%)

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD--DRTLCGPISKFKLMLLYSS 485
           ++A  R  G      +   +I+ +     +D A   +H+  DR +         ++ YSS
Sbjct: 183 MMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGI------LPDVVTYSS 236

Query: 486 LLRTLTK----------CK--RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
           ++  L K          CK  R  ++  + + M+  G+ PD+ T+S L+  + L G    
Sbjct: 237 IIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDE 296

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKK 581
             KL S +   G++P+   +  LI  YCK             + +S + PD  T  ++ +
Sbjct: 297 AMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQ 356

Query: 582 SLWKEGRRKEAAAVE 596
            L++   R+ AAA E
Sbjct: 357 GLFQT--RRTAAAKE 369



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 20/190 (10%)

Query: 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK 476
            + G V   ++L   +   G++    T   +ID Y ++ K D A+K       L G +S 
Sbjct: 254 CKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMK------LLSGMVSV 307

Query: 477 F--KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
                 + YS+L+    K  R  DA+ + +EM  SG+ PD+ T++ ++            
Sbjct: 308 GLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAA 367

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCK---------YLSNSNLMP---DAATKELLKKS 582
           ++L+  + ++G + +   + +++   CK            N  LM    +A T  ++  +
Sbjct: 368 KELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDA 427

Query: 583 LWKEGRRKEA 592
           L K GR  EA
Sbjct: 428 LLKVGRNDEA 437



 Score = 40.4 bits (93), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 19/121 (15%)

Query: 456 KADAALKAFH---DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV 512
           ++  AL+  H   DDR    P      ++ Y++++    K      A +   EM+  GI+
Sbjct: 173 RSQEALELLHMMADDRGGGSPPD----VVSYTTVINGFFKEGDSDKAYSTYHEMLDRGIL 228

Query: 513 PDVQTFSGLM------------YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
           PDV T+S ++            +    +G     +KLF ++ + GV+PD   +  LI  Y
Sbjct: 229 PDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 288

Query: 561 C 561
           C
Sbjct: 289 C 289



 Score = 40.0 bits (92), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 46/99 (46%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y+ ++  Y   GK  EA++    ++  G  PN+ TY+ +I     + +++ AL +F  +
Sbjct: 280 TYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEM 339

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
               +      Y I+++G     R   AK L   + + G
Sbjct: 340 ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESG 378



 Score = 40.0 bits (92), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 78/198 (39%), Gaps = 9/198 (4%)

Query: 79  APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSK----FL 134
           A   D A+ ++  + S      N  T   L     K  R  +   L  ++ SS      +
Sbjct: 291 AGKMDEAMKLLSGMVS-VGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDII 349

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
             ++    L Q   T+   EL +       Q    +   +YNI++    K     +A++ 
Sbjct: 350 TYNIILQGLFQTRRTAAAKELYVRITESGTQ----IELSTYNIILHGLCKNKLTDDALQM 405

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
           F+ +        +RT+ +MI+ L+ +G+ D A ++F A     +      Y ++ E  +G
Sbjct: 406 FQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIG 465

Query: 255 VERFDEAKSLLNEMRDDG 272
               +E   L   M D+G
Sbjct: 466 QGLLEELDQLFLSMEDNG 483


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 101/504 (20%), Positives = 196/504 (38%), Gaps = 50/504 (9%)

Query: 60  SLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAK 114
           S + ++ + P IVT+     A  S    + A  +M A+     FS    T + +   L K
Sbjct: 259 SQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGK-GFSPGVYTYNTVINGLCK 317

Query: 115 SQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTES 174
             +    K +  ++  S     S  + +L+      GD+      +++ R R  +     
Sbjct: 318 HGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVC 377

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           ++ +MS++ ++G   +A+  F  V + G IP++  YT++I+     G +  A+ + + + 
Sbjct: 378 FSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEML 437

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQ 293
                     Y  ++ G    +   EA  L NEM +   FP    + + ++   ++G +Q
Sbjct: 438 QQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQ 497

Query: 294 GANEFLREMLPDKRIK-NVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLD--PKALA 350
            A E  ++M  +KRI+ +V  Y    D      D + +          + W D   K + 
Sbjct: 498 NAMELFQKM-KEKRIRLDVVTYNTLLDGFGKVGDIDTAK---------EIWADMVSKEIL 547

Query: 351 NTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
            T   +S  V +L +                H       W        +P     V    
Sbjct: 548 PTPISYSILVNALCSKG--------------HLAEAFRVWDEMISKNIKP----TVMICN 589

Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK-----KADAALKAFH 465
            M+    R G+    +  + K+ S+G      +   +I  YG  +     KA   +K   
Sbjct: 590 SMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLI--YGFVREENMSKAFGLVKKME 647

Query: 466 DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF 525
           +++    P      +  Y+S+L    +  +  +A  VL +MI  G+ PD  T++ ++  F
Sbjct: 648 EEQGGLVPD-----VFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGF 702

Query: 526 ALQGDEKIVQKLFSMVRQNGVEPD 549
             Q +     ++   + Q G  PD
Sbjct: 703 VSQDNLTEAFRIHDEMLQRGFSPD 726



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 89/219 (40%), Gaps = 28/219 (12%)

Query: 389 AWHFFCWVAYQ----PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI 444
            W    W  YQ     G   +VY L  M+  L + G +E V   +++++  G+     T 
Sbjct: 214 GWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTY 273

Query: 445 RLIIDFY---GISKKADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAI 500
             +I  Y   G+ ++A   + A         P   F   +  Y++++  L K  +   A 
Sbjct: 274 NTLISAYSSKGLMEEAFELMNAM--------PGKGFSPGVYTYNTVINGLCKHGKYERAK 325

Query: 501 NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ-- 558
            V  EM+ SG+ PD  T+  L+     +GD    +K+FS +R   V PD   F  ++   
Sbjct: 326 EVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLF 385

Query: 559 ----------AYCKYLSNSNLMPDAATKELLKKSLWKEG 587
                      Y   +  + L+PD     +L +   ++G
Sbjct: 386 TRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKG 424



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 11/198 (5%)

Query: 84  SALSIMEALKSN-PNFSHNQSTLHALATVLAKSQR---NHELKTLIGDISSSKFLNVSVN 139
           S L I+ +L S   N   N S    L     ++++    HE  TL+     SK   VS++
Sbjct: 146 SRLEIVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAFTLL----RSKGFTVSID 201

Query: 140 FMN-LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF-RQ 197
             N L+      G +EL    + E  +    ++  + NI+++   K GK  E V TF  Q
Sbjct: 202 ACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGK-MEKVGTFLSQ 260

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           V ++G  P+  TY  +I    + G ++ A E+ +A+P          Y  ++ G     +
Sbjct: 261 VQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGK 320

Query: 258 FDEAKSLLNEMRDDGKFP 275
           ++ AK +  EM   G  P
Sbjct: 321 YERAKEVFAEMLRSGLSP 338



 Score = 46.6 bits (109), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 82/194 (42%), Gaps = 39/194 (20%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           D Y L  ++    + G+++    L  K++   +RL   T   ++D +G     D A + +
Sbjct: 479 DSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIW 538

Query: 465 HD---DRTLCGPIS----------------KFKL------------MLLYSSLLRTLTKC 493
            D      L  PIS                 F++            +++ +S+++   + 
Sbjct: 539 ADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRS 598

Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR-----QNGVEP 548
               D  + LE+MI  G VPD  +++ L+Y F     E+ + K F +V+     Q G+ P
Sbjct: 599 GNASDGESFLEKMISEGFVPDCISYNTLIYGFV---REENMSKAFGLVKKMEEEQGGLVP 655

Query: 549 DAYMFKVLIQAYCK 562
           D + +  ++  +C+
Sbjct: 656 DVFTYNSILHGFCR 669



 Score = 45.8 bits (107), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 82/215 (38%), Gaps = 1/215 (0%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  TL+ +   L K  +  ++ T +  +         V +  L+  YS+ G +E      
Sbjct: 234 NVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELM 293

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           N    +       +YN V++   K GK   A E F +++  G  P+S TY  ++      
Sbjct: 294 NAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKK 353

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM- 279
           G +    +VFS +    +      +  ++  F      D+A    N +++ G  P   + 
Sbjct: 354 GDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIY 413

Query: 280 RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
            + ++     G I  A     EML      +V  Y
Sbjct: 414 TILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTY 448



 Score = 40.4 bits (93), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 41/206 (19%), Positives = 81/206 (39%), Gaps = 20/206 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA- 459
           G++  VY    ++  L +HG  E    + A++   G+    +T R ++      KK D  
Sbjct: 300 GFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLL--MEACKKGDVV 357

Query: 460 -ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
              K F D R+          ++ +SS++   T+      A+     +  +G++PD   +
Sbjct: 358 ETEKVFSDMRSR----DVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIY 413

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSN 566
           + L+  +  +G   +   L + + Q G   D   +  ++   CK             ++ 
Sbjct: 414 TILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTE 473

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEA 592
             L PD+ T  +L     K G  + A
Sbjct: 474 RALFPDSYTLTILIDGHCKLGNLQNA 499


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 12/118 (10%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++L+ TL K  +  ++ N+L  M   G+ PDV  +S LM  + L G+ +  +++F ++ 
Sbjct: 223 YNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMV 282

Query: 543 QNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGR 588
           Q GV PD Y + ++I   CK             + + N++PD  T   L   L K GR
Sbjct: 283 QTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGR 340



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/243 (20%), Positives = 103/243 (42%), Gaps = 14/243 (5%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHAL--------RSAPNADSALSIMEALK 93
           LID++    +   S +L +++  + + P +V +++             A     +M    
Sbjct: 226 LIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTG 285

Query: 94  SNPN-FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD 152
            NP+ +S+N      +   L K +R  E   L+ ++     +  +V + +L+      G 
Sbjct: 286 VNPDVYSYN-----IIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGR 340

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
           +  +L    E   R +  +  +YN ++    K     +A+  F ++ + G  PN  TYT 
Sbjct: 341 ITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTA 400

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +I+ L   G+L     +F  L +         Y +++ G      FDEA ++ ++M D+G
Sbjct: 401 LIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNG 460

Query: 273 KFP 275
             P
Sbjct: 461 CIP 463



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 86/216 (39%), Gaps = 17/216 (7%)

Query: 389 AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII 448
           + HF   V  Q G+  D  +   +L  L + G      +L+  +     R        II
Sbjct: 99  SLHFHDKVVAQ-GFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTII 157

Query: 449 DFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF 508
           D     K  D A   + +          F  ++ Y++L+       +  +A  +L EMI 
Sbjct: 158 DGLCKDKLVDEAYDLYSEMNAR----GIFPDVITYTTLICGFCLAGQLMEAFGLLNEMIL 213

Query: 509 SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------- 561
             I P++ T++ L+     +G  K  + L +++ + GV+PD  ++ +L+  YC       
Sbjct: 214 KNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQK 273

Query: 562 -----KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                  +  + + PD  +  ++   L K  R  EA
Sbjct: 274 AKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEA 309



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 100/253 (39%), Gaps = 57/253 (22%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           ++Y    ++  L + G V+    L+A +   G++       +++D Y +  +   A + F
Sbjct: 219 NIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIF 278

Query: 465 HD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM- 522
               +T   P      +  Y+ ++  L K KR  +A+N+L EM+   ++PD  T+S L+ 
Sbjct: 279 LVMVQTGVNPD-----VYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLID 333

Query: 523 -----------------------------YHFALQG-------DEKIVQKLFSMVRQNGV 546
                                        Y+  L G       D+ I   LF  +++ G+
Sbjct: 334 GLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIA--LFMKMKERGI 391

Query: 547 EPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAA 594
           +P+ Y +  LI   CK            +L       D  T  ++   L KEG   EA A
Sbjct: 392 QPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALA 451

Query: 595 VEERCEKINDVPS 607
           ++ + E    +P+
Sbjct: 452 MKSKMEDNGCIPN 464



 Score = 46.6 bits (109), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 71/166 (42%), Gaps = 1/166 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + +  L+  +  +G L       NE   +    +  +YN ++    K GK  E+      
Sbjct: 186 ITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAV 245

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +  +G  P+   Y+++++    +G++  A ++F  +    +      Y I++ G    +R
Sbjct: 246 MTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKR 305

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREM 302
            DEA +LL EM      P      +L + + ++G I    +  +EM
Sbjct: 306 VDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEM 351



 Score = 42.4 bits (98), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 57/126 (45%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           LM+     G+++  L   ++   +   +   SY I+++   K G+   A++  R + D  
Sbjct: 86  LMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRS 145

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+   Y+ +I+ L     +D A +++S +    I      Y  L+ GF    +  EA 
Sbjct: 146 TRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAF 205

Query: 263 SLLNEM 268
            LLNEM
Sbjct: 206 GLLNEM 211


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 104/243 (42%), Gaps = 11/243 (4%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           ++   + S  + +  L  M  ++     S N  T + L     K ++  E   L+  ++ 
Sbjct: 212 VIIRGVVSQGDLEKGLGFMRKMEKE-GISPNVVTYNTLIDASCKKKKVKEAMALLRAMAV 270

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                  +++ +++      G +  V     E R +  +    +YN +++ + K G   +
Sbjct: 271 GGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQ 330

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
            +    +++ +G  PN  TYT +I  +   G L  A+E+F  + +  ++   + Y  L++
Sbjct: 331 GLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLID 390

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA-------LERMQE-MGFIQGANEFLREM 302
           GF      +EA  +L+EM   G  P      A       L R+QE +G ++G  E  R +
Sbjct: 391 GFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVE--RGL 448

Query: 303 LPD 305
            PD
Sbjct: 449 PPD 451



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 16/124 (12%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK--LFSM 540
           YS+++    + +    A  + EEM+  G++PD  T+S L+    LQ  +K+V+   LF  
Sbjct: 455 YSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQ--QKLVEAFDLFRE 512

Query: 541 VRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGR 588
           + + G+ PD   +  LI AYC              +     +PD  T  +L   L K+ R
Sbjct: 513 MMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKAR 572

Query: 589 RKEA 592
            K A
Sbjct: 573 TKVA 576



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/175 (17%), Positives = 69/175 (39%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           ++ T + L     K    H+   L+ ++         V +  L+     +G+L   +  +
Sbjct: 311 DEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIF 370

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           ++ R R    +  +Y  ++  + + G   EA +   ++I  G  P+  TY  ++     L
Sbjct: 371 DQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFL 430

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           G++  A+ +   +    +      Y  ++ GF       +A  +  EM + G  P
Sbjct: 431 GRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLP 485



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 44/102 (43%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN+++      G   + +   R++  EG  PN  TY  +I+      K+  A+ +  A+
Sbjct: 209 TYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAM 268

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            +  +      Y  ++ G  G  R  E   L+ EMR  G  P
Sbjct: 269 AVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVP 310



 Score = 42.7 bits (99), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 4/162 (2%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G + +VY    ++  +   G +E     + K+  +G+     T   +ID     KK   A
Sbjct: 202 GVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEA 261

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           + A      + G  +    ++ Y+S++  L    R  +   ++EEM   G+VPD  T++ 
Sbjct: 262 M-ALLRAMAVGGVAAN---LISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNT 317

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           L+  F  +G+      L S +   G+ P+   +  LI   CK
Sbjct: 318 LVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCK 359



 Score = 42.7 bits (99), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 73/165 (44%), Gaps = 12/165 (7%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G + +V     ++  + + G++     +  ++R  G+R    T   +ID +      + A
Sbjct: 342 GLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEA 401

Query: 461 LKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
            K   +       +S F   ++ Y++L+       R  +A+ +L  M+  G+ PDV ++S
Sbjct: 402 YKVLSEM-----IVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYS 456

Query: 520 GLMYHFALQGDEKIVQKLFSM---VRQNGVEPDAYMFKVLIQAYC 561
            ++  F     E+ + K F M   + + GV PD   +  LIQ  C
Sbjct: 457 TVIAGFC---RERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLC 498



 Score = 42.7 bits (99), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 485 SLLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           +LLR  +   RD+D A  V  +M+ +G+ P+V T++ ++     QGD +        + +
Sbjct: 176 ALLRRSSSNHRDYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEK 235

Query: 544 NGVEPDAYMFKVLIQAYCK 562
            G+ P+   +  LI A CK
Sbjct: 236 EGISPNVVTYNTLIDASCK 254



 Score = 42.4 bits (98), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 16/115 (13%)

Query: 493 CKRDF--DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD-EKIVQKLFSMVRQNGVEPD 549
           C++    +A  VL EMI SG  P V T++ L++ +   G  ++ V  L  MV + G+ PD
Sbjct: 393 CQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMV-ERGLPPD 451

Query: 550 AYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
              +  +I  +C+             +    ++PD  T   L + L  + +  EA
Sbjct: 452 VVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEA 506



 Score = 42.0 bits (97), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 108/273 (39%), Gaps = 20/273 (7%)

Query: 67  LDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHEL 121
           L P +VT+      +  A N   A+ I + ++       N+ T   L     +    +E 
Sbjct: 343 LSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVR-GLRPNERTYTTLIDGFCQKGLMNEA 401

Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
             ++ ++  S F    V +  L+  Y   G ++  +       +R       SY+ V++ 
Sbjct: 402 YKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAG 461

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
           + +  +  +A +   +++++G +P++ TY+ +I+ L    KL  A ++F  +    +   
Sbjct: 462 FCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPD 521

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLRE 301
              Y  L+  +       +A  L +EM   G  P       L        I G N+  R 
Sbjct: 522 EVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVL--------INGLNKKART 573

Query: 302 MLPDKRIKNVRYYEDGSDDDED-----ENDDNN 329
            +  KR+    +YE+   DD       EN  NN
Sbjct: 574 KVA-KRLLLKLFYEESVPDDVTYNTLIENCSNN 605


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/392 (19%), Positives = 158/392 (40%), Gaps = 38/392 (9%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y +V+    K G   + ++ FR++I+ G  PN   Y+ +I  L  +GKL  A+ +F  +
Sbjct: 81  TYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEM 140

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFI 292
               IK     Y  L+        + EA    ++M  +G  P       L + + + G +
Sbjct: 141 VSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKV 200

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKA-LAN 351
           Q A +    M+      N+  Y                   +  G+ L   +D    L  
Sbjct: 201 QEAYKIFELMIKQGEAPNIVTYNS-----------------LLNGLCLHHQMDHAVRLFE 243

Query: 352 TLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEK 411
            + E   ++         +    L+       K+ E A   F  + Y+   T  +     
Sbjct: 244 VMVERGIKI-------DVISYNTLINGYCTSGKTEE-AMTLFRKMQYEE-LTPSITTYTI 294

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA--DAALKAFHDDRT 469
           +L  L ++G +     L   ++  G      T  +++D  G+ K    + A+  F   ++
Sbjct: 295 LLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLD--GLCKNGCIEEAIDVFRSLKS 352

Query: 470 LCGPISKFKLML-LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
           +     K+K  + +YS L+  + + +R   A+ + +E+   G+VP++ T++ ++     +
Sbjct: 353 I-----KYKPSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKE 407

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
           G     ++LF  + ++G E D   F  +I+ +
Sbjct: 408 GKLLEAERLFVQMEESGCEQDEISFNFIIRGF 439



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 106/240 (44%), Gaps = 15/240 (6%)

Query: 45  SIRLAVRSNSSNSLSSLLNDRLLDPFIVTHA-----LRSAPNADSALSIMEAL---KSNP 96
           S R  +   ++ + S ++ + +L P +VT       L        A  I E +      P
Sbjct: 159 SCRFGLWKEATRTFSQMVGEGIL-PDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAP 217

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV-NFMNLMQWYSTSGDLEL 155
           N     S L+ L       Q +H ++    ++   + + + V ++  L+  Y TSG  E 
Sbjct: 218 NIVTYNSLLNGLC---LHHQMDHAVRLF--EVMVERGIKIDVISYNTLINGYCTSGKTEE 272

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
            ++ + + +      S  +Y I++    + G+   A E F  +   G  P+  TYTV+++
Sbjct: 273 AMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLD 332

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            L   G ++ A++VF +L  ++ K + + Y IL+ G     R++ A  + +E+   G  P
Sbjct: 333 GLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLVP 392



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 22/223 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF---YGISKKA 457
           G   +V     ++  L R G +     L  ++ S G++    T   +I     +G+ K+A
Sbjct: 109 GICPNVIVYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEA 168

Query: 458 DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
                    +  L   ++       +++L+  L+K  +  +A  + E MI  G  P++ T
Sbjct: 169 TRTFSQMVGEGILPDVVT-------FTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVT 221

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLS 565
           ++ L+    L        +LF ++ + G++ D   +  LI  YC            + + 
Sbjct: 222 YNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQ 281

Query: 566 NSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
              L P   T  +L K+L++ GR + A  +    +     PSL
Sbjct: 282 YEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSL 324



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 15/158 (9%)

Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL 461
           Y + + AL K  T  AR   VEL  R+++++ S      F T  L+ID       A   L
Sbjct: 47  YGYLINALRK--TRQARRA-VELHRRMLSEICSGN----FFTYGLVIDSLCKDGLAIKGL 99

Query: 462 KAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           K F +  +  +C  +      ++YSSL+  L +  +  +A+N+ +EM+  GI  +V T++
Sbjct: 100 KMFREMINMGICPNV------IVYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYN 153

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
            L++     G  K   + FS +   G+ PD   F  LI
Sbjct: 154 SLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLI 191



 Score = 46.6 bits (109), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 9/137 (6%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           S ++Y +++    K G   EA++ FR +      P+ R Y+++I  +    + +SA+E+F
Sbjct: 323 SLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEIF 382

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-----AMRVALER 285
             +P + +      Y I++ G     +  EA+ L  +M + G           +R  L+ 
Sbjct: 383 DEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFLQE 442

Query: 286 MQEMGFIQGANEFLREM 302
            Q    +Q A EFL+ M
Sbjct: 443 NQ----VQKAMEFLKRM 455



 Score = 45.8 bits (107), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 12/139 (8%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y  ++ +L K       + +  EMI  GI P+V  +S L+      G  +    LF  + 
Sbjct: 82  YGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEMV 141

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
             G++ +   +  LI A C++            +    ++PD  T   L   L K+G+ +
Sbjct: 142 SQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQ 201

Query: 591 EAAAVEERCEKINDVPSLA 609
           EA  + E   K  + P++ 
Sbjct: 202 EAYKIFELMIKQGEAPNIV 220



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 1/138 (0%)

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
           NV V + +L+      G L   ++ ++E   +    +  +YN ++    + G   EA  T
Sbjct: 113 NVIV-YSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRT 171

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
           F Q++ EG +P+  T+T +I+HL   GK+  A ++F  +           Y  L+ G   
Sbjct: 172 FSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCL 231

Query: 255 VERFDEAKSLLNEMRDDG 272
             + D A  L   M + G
Sbjct: 232 HHQMDHAVRLFEVMVERG 249



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 2/121 (1%)

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A+E F ++   G +PN  TY +MI  L   GKL  A  +F  +     ++    +  ++ 
Sbjct: 378 AMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIR 437

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERM--QEMGFIQGANEFLREMLPDKRI 308
           GF+   +  +A   L  MR+    P  ++ + L  +   +    +  N FL E++  K +
Sbjct: 438 GFLQENQVQKAMEFLKRMREKNFSPNDSVTLMLVNLYAADAQSSELPNNFLHELVQKKTL 497

Query: 309 K 309
           K
Sbjct: 498 K 498


>gi|224136033|ref|XP_002327364.1| predicted protein [Populus trichocarpa]
 gi|222835734|gb|EEE74169.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 114/608 (18%), Positives = 229/608 (37%), Gaps = 77/608 (12%)

Query: 68  DPFIVTH----ALRSAPNADSALSIMEALKS--------------NPNFSHNQSTLHALA 109
           DPF+       AL  +   + A  I+++L S              +PNF H+  T   + 
Sbjct: 89  DPFLCLQNYLSALSISLTPNEASEILKSLNSPSLALRFFHFCPSLSPNFHHDCFTYSRII 148

Query: 110 TVLAKSQ---RNHELKTLIGDISSSKFLNVSVNFMN-LMQWYSTSGDLELVLSTWNEYRQ 165
            +L+KS    R H  ++++ ++  +  +  S++ +N L+ +Y  S DL+  +    ++  
Sbjct: 149 LILSKSNLPDRFHLARSIVSEMERNG-VRGSISTVNILIGFYENSEDLQKCIGLIKKWGL 207

Query: 166 RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
           R   ++  +Y  ++  Y ++    +    + ++  +G + +   + ++++ LV   ++D 
Sbjct: 208 R---MTGYTYKCLVQAYLRSRNTEKGFAVYLEMKKKGHMLDIFAFNMLLDALVKDSEVDH 264

Query: 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALE 284
           A +VF  +     +     Y I++     + + DE+  L  EM + G  P   A    ++
Sbjct: 265 AYKVFEDMKRKHCEPDEYTYTIMIRMTGKIGKPDESLELFEEMLNKGYSPNVIAYNTMIQ 324

Query: 285 RMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWL 344
            +     +  A     +M+     K  R  E                    Y V L    
Sbjct: 325 ALANARMVDKAILLFLKMVE----KECRPSE------------------FTYSVILHLLA 362

Query: 345 DPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFC--WVAYQPGY 402
             + L + LDE        ++ + + +  R     L+       A   FC  W  ++ G 
Sbjct: 363 TERKL-HKLDEVVEVSKKYMSRSIYAYLVR----TLKKLGHASEAHRLFCNMWNCHERG- 416

Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK-KADAAL 461
             D  A   ML  L   G       L+ K+   G+ +   T+     F  + K K  + L
Sbjct: 417 --DRDACVSMLECLCSAGKTTEAIDLLGKIHEKGVSV--DTVMYNTVFSALGKLKQISPL 472

Query: 462 KAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL 521
              ++     GP+        Y+ L+ +  +  +  +AI + EE+  S   PD  +++ L
Sbjct: 473 HDLYEKMKQDGPLPD---TFTYNILISSFGRAGKVDEAIKIFEELEDSDYKPDTCSYNSL 529

Query: 522 MYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY---------CKYLSN---SNL 569
           +      G        F  + + G+ PD   +  LI+ +         C+          
Sbjct: 530 INCLGKNGHLDEAHMKFKEMCEKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGC 589

Query: 570 MPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAVSSADLTRVHSIY 629
            P+  T  +L   L + GR  EA  +  + ++   +P       +  + S    +V    
Sbjct: 590 YPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLIPDSITYSVLARLQSGSHRKVRVRK 649

Query: 630 RNSITSIV 637
           +N IT  V
Sbjct: 650 QNPITGWV 657


>gi|296081511|emb|CBI20034.3| unnamed protein product [Vitis vinifera]
          Length = 596

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 83/188 (44%), Gaps = 2/188 (1%)

Query: 85  ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
           A+ + E +K   NF     T++ L   L +++   E + L   +      N+    + L 
Sbjct: 277 AVGVFELMKRY-NFDAGVDTINCLLDNLGRAKLGKEAQALFEKLEDRFTPNLRTYTVLLN 335

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204
            W      +E    TWNE   +       +++ ++    K  K  +A++ F  +  +G  
Sbjct: 336 GWCRIKNLVE-AGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPS 394

Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL 264
           PN RTYT++I  L    K+  A+E F  +     +  +  Y  L+ GF   ++ D+  +L
Sbjct: 395 PNVRTYTILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYAL 454

Query: 265 LNEMRDDG 272
           L EM++ G
Sbjct: 455 LKEMKEKG 462



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 98/260 (37%), Gaps = 68/260 (26%)

Query: 375 LVCKVLRHFK-SPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
           LV  VL  FK + + A+ FFCW   + G+TH+      M+++L R    E +  ++ ++ 
Sbjct: 192 LVVGVLERFKHARKPAFRFFCWAGQKAGFTHNSRTYNAMMSVLGRTRQFESMMGMLGEMG 251

Query: 434 SDGM------------------------------RLPF----STIRLIIDFYG---ISKK 456
             G+                              R  F     TI  ++D  G   + K+
Sbjct: 252 EKGLLTMETFSIAIKAFAAAKERKKAVGVFELMKRYNFDAGVDTINCLLDNLGRAKLGKE 311

Query: 457 ADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
           A A  +   D  T          +  Y+ LL    + K   +A     EMI  G  PD+ 
Sbjct: 312 AQALFEKLEDRFT--------PNLRTYTVLLNGWCRIKNLVEAGRTWNEMIDKGFKPDI- 362

Query: 517 TFSGLMYHFALQGDEKIVQ-----KLFSMVRQNGVEPDAYMFKVLIQAYCKYLS------ 565
               + +H  L+G  K  +     KLF +++  G  P+   + +LI+  CK +       
Sbjct: 363 ----IAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYTILIRDLCKQMKMQEAVE 418

Query: 566 ------NSNLMPDAATKELL 579
                 +S   PDAA    L
Sbjct: 419 YFDEMVDSGCQPDAAVYTCL 438



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 6/111 (5%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ + ++L  L KCK+  DAI + E M   G  P+V+T++ L+     Q   +   + F 
Sbjct: 362 IIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYTILIRDLCKQMKMQEAVEYFD 421

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPD--AATKELLKKSLWKEGR 588
            +  +G +PDA ++  LI  +     N   M    A  KE+ +K    +GR
Sbjct: 422 EMVDSGCQPDAAVYTCLITGF----GNQKKMDKVYALLKEMKEKGCPADGR 468



 Score = 42.4 bits (98), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 5/94 (5%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+R L K  +  +A+   +EM+ SG  PD   ++ L+  F  Q     V  L   ++
Sbjct: 400 YTILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMK 459

Query: 543 QNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATK 576
           + G   D   +  LI+     L  +  MPD A +
Sbjct: 460 EKGCPADGRTYNALIK-----LMTNRQMPDDAVR 488



 Score = 40.0 bits (92), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 45/102 (44%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           +  +Y I++    K  K  EAVE F +++D G  P++  YT +I    N  K+D    + 
Sbjct: 396 NVRTYTILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALL 455

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
             +         + Y  L++     +  D+A  +  +M  +G
Sbjct: 456 KEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNG 497


>gi|224117008|ref|XP_002317451.1| predicted protein [Populus trichocarpa]
 gi|222860516|gb|EEE98063.1| predicted protein [Populus trichocarpa]
          Length = 461

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 2/140 (1%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV-ETFRQV 198
           +  L+     +G  E  L  W + ++R     T +YN++++++ K  K+FEA      ++
Sbjct: 259 YSTLISGLFKAGRKEEALGVWEDMKERGYKPDTVTYNVIINLFCKD-KDFEAAYRLLDEM 317

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
           +++G  P+  +Y V++  L   GK   A ++F  +P          Y IL +GF    +F
Sbjct: 318 VEKGCKPDVISYNVILRELFEEGKRGEANDLFEDMPRRGCAPDVVSYRILFDGFCNGMQF 377

Query: 259 DEAKSLLNEMRDDGKFPGRA 278
            EA  +L+EM   G  P  A
Sbjct: 378 KEAAFILDEMIFKGFVPCSA 397



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 113/267 (42%), Gaps = 49/267 (18%)

Query: 379 VLRHFKSPETAWHFF----CWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
           +LR  K P+ A   F         +P + + + + + ++T L R      +  ++A+L+ 
Sbjct: 15  LLRLQKDPKLALQLFKNPNPKTPSKP-FRYSLLSYDLIITKLGRAKMFNEMQEILAQLKE 73

Query: 435 DGMRLPFSTIRL-IIDFYGISKKADAALK------AFHDDRT------------LCGPIS 475
           + +  P   +   II+FYG ++  + ALK      +F   RT            +C    
Sbjct: 74  ETLFTPKEALFCDIINFYGRARLPENALKLLVELPSFRVQRTVKSYNSLLSVFLMCKDFD 133

Query: 476 KFKLMLL------------YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
           K + + +            Y+ L+R      R  DA  V +EM   G+ P+V TF  L+Y
Sbjct: 134 KMRELFVGIEKLGKADACTYNLLIRGFCASGRLDDASKVFDEMTNRGVSPNVITFGNLIY 193

Query: 524 HFALQGDEKIVQKLFS-MVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLM 570
            F L    K   KL + MV+   V P+AY++  LI+  C            K +  + + 
Sbjct: 194 GFCLHLRLKEAFKLKTDMVKVYRVYPNAYIYASLIKGVCKNGELSLAFRLKKEMIRNKIE 253

Query: 571 PDAATKELLKKSLWKEGRRKEAAAVEE 597
            D A    L   L+K GR++EA  V E
Sbjct: 254 LDPAIYSTLISGLFKAGRKEEALGVWE 280



 Score = 39.7 bits (91), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 493 CK-RDFDA-INVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA 550
           CK +DF+A   +L+EM+  G  PDV +++ ++     +G       LF  + + G  PD 
Sbjct: 302 CKDKDFEAAYRLLDEMVEKGCKPDVISYNVILRELFEEGKRGEANDLFEDMPRRGCAPDV 361

Query: 551 YMFKVLIQAYC 561
             +++L   +C
Sbjct: 362 VSYRILFDGFC 372



 Score = 39.3 bits (90), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 12/123 (9%)

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
           +Y+SL++ + K      A  + +EMI + I  D   +S L+      G ++    ++  +
Sbjct: 223 IYASLIKGVCKNGELSLAFRLKKEMIRNKIELDPAIYSTLISGLFKAGRKEEALGVWEDM 282

Query: 542 RQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRR 589
           ++ G +PD   + V+I  +CK             +      PD  +  ++ + L++EG+R
Sbjct: 283 KERGYKPDTVTYNVIINLFCKDKDFEAAYRLLDEMVEKGCKPDVISYNVILRELFEEGKR 342

Query: 590 KEA 592
            EA
Sbjct: 343 GEA 345



 Score = 38.9 bits (89), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 89/212 (41%), Gaps = 13/212 (6%)

Query: 65  RLLDPFIVTHALRSAPNADSALSIMEALKSNPN-------FSHNQSTLHALATVLAKSQR 117
           R + PF +   LR   +   AL + +    NPN       F ++  +   + T L +++ 
Sbjct: 5   RPITPFRLASLLRLQKDPKLALQLFK----NPNPKTPSKPFRYSLLSYDLIITKLGRAKM 60

Query: 118 NHELKTLIGDISSSK-FLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYN 176
            +E++ ++  +     F      F +++ +Y  +   E  L    E        + +SYN
Sbjct: 61  FNEMQEILAQLKEETLFTPKEALFCDIINFYGRARLPENALKLLVELPSFRVQRTVKSYN 120

Query: 177 IVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM 236
            ++SV+    K+F+ +      I++    ++ TY ++I      G+LD A +VF  +   
Sbjct: 121 SLLSVFLMC-KDFDKMRELFVGIEKLGKADACTYNLLIRGFCASGRLDDASKVFDEMTNR 179

Query: 237 RIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
            +      +  L+ GF    R  EA  L  +M
Sbjct: 180 GVSPNVITFGNLIYGFCLHLRLKEAFKLKTDM 211


>gi|302814999|ref|XP_002989182.1| hypothetical protein SELMODRAFT_129427 [Selaginella moellendorffii]
 gi|300143082|gb|EFJ09776.1| hypothetical protein SELMODRAFT_129427 [Selaginella moellendorffii]
          Length = 614

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 61/116 (52%)

Query: 165 QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
           ++ KL S+ SYNIV++   K G+N  AVE FR++  +  +P+  T+  +I+ L   GK  
Sbjct: 140 RKMKLPSSMSYNIVIAACVKRGRNEAAVELFREMKVKKRVPDIFTFNTVIQSLSKAGKFK 199

Query: 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR 280
            AL++   +  ++       + +LV G    +R  EA+S+L  M   G  P   +R
Sbjct: 200 EALDIVDEMVWLQCSPNELTFGLLVHGLCKAKRALEAESVLEVMDTVGCVPDPNLR 255



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 51/108 (47%)

Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           L   + NI++    K G   +A E    ++D+G  P++ T   +++ L  + K++ A+++
Sbjct: 7   LDVRTCNIMVDSLCKGGLVDDAAELVHGMMDKGPYPDTVTCNSLLDGLFKVNKVEHAMKL 66

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR 277
           +  +    +K  +  Y IL+ G     R  EA   L+    D + P R
Sbjct: 67  YEKMSRSFVKADAFTYNILLHGLCKAGRIQEACQKLSAALRDREAPVR 114



 Score = 40.0 bits (92), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 87/209 (41%), Gaps = 21/209 (10%)

Query: 71  IVTHAL---RSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI-- 125
           ++ H L   + A  A+S L +M+ +   P+   N  T + +   L K+ +  E   L+  
Sbjct: 222 LLVHGLCKAKRALEAESVLEVMDTVGCVPD--PNLRTFNIMIHGLCKANKVGEADALVRR 279

Query: 126 ----GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
                 ++  +F      F  ++  +  +GD +  LS + E  +  +   + + N V++ 
Sbjct: 280 MEDECGVAPDEF-----TFNTIIDGHFKAGDSKGALSLFKEMARLGRCRCSVTLNTVVTG 334

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRT--YTVMIEHLVNLGKLDSALEVFSALPLMRIK 239
             K G+   AV   R   D  +   +    Y V+I+    LG+ +++ ++F  +      
Sbjct: 335 LCKAGEVDRAVTLVR---DSASARQATVFMYNVVIDKFAKLGRFEASKQLFQEMSRFGCH 391

Query: 240 RTSKQYLILVEGFVGVERFDEAKSLLNEM 268
             S  + ILV       R  EA  L+ +M
Sbjct: 392 PDSVTFTILVSESCKQRRTHEALELVEQM 420


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 81/411 (19%), Positives = 156/411 (37%), Gaps = 72/411 (17%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN V+  + K G   +A + F++++  G  P+  TY+ ++  L     +D A      +
Sbjct: 223 AYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQM 282

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
               +   +  Y  L+ G+    ++ EA  +  EMR     P   A+   +  + + G I
Sbjct: 283 VNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKI 342

Query: 293 QGANEFLREMLPDKRIKNVRYYE-------------DGSDDDEDENDDNNSGVRIAYGVQ 339
           + A +    M    +  +V  Y              D +D  +    D  + V   + V 
Sbjct: 343 KEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVL 402

Query: 340 LKPWLDPKALANTLDEWS--------PEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWH 391
           +K + +   L   +  ++        P VV+      ++     +C++ +     + A  
Sbjct: 403 IKAYANCGMLDKAMIIFNEMRDHGVKPHVVT------YMTVIAALCRIGKM----DDAME 452

Query: 392 FFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY 451
            F  +  Q G   D YA   ++     HG +     LI+++ ++GMRL        I F+
Sbjct: 453 KFNQMIDQ-GVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLD-------IVFF 504

Query: 452 GISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
           G                                S++  L K  R  DA N+ +  +  G+
Sbjct: 505 G--------------------------------SIINNLCKLGRVMDAQNIFDLTVNVGL 532

Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            PD   ++ LM  + L G  +   ++F  +   G+EP+   +  L+  YCK
Sbjct: 533 HPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCK 583



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 4/180 (2%)

Query: 96  PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLEL 155
           P+     S +HAL    A  +    L+ ++    +   L  +  + NL+  YS++G  + 
Sbjct: 254 PDLVTYSSVVHALCKARAMDKAEAFLRQMV----NKGVLPDNWTYNNLIYGYSSTGQWKE 309

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
            +  + E R+++ L    + N +M    K GK  EA + F  +  +G  P+  +YT+M+ 
Sbjct: 310 AVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLN 369

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                G L    ++F  +    I      + +L++ +      D+A  + NEMRD G  P
Sbjct: 370 GYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKP 429



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 59/133 (44%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+Q + T G L       +E       L    +  +++   K G+  +A   F   ++ G
Sbjct: 472 LIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVG 531

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P++  Y ++++    +GK++ AL VF A+    I+     Y  LV G+  + R DE  
Sbjct: 532 LHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGL 591

Query: 263 SLLNEMRDDGKFP 275
           SL  EM   G  P
Sbjct: 592 SLFREMLQKGIKP 604



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 96/420 (22%), Positives = 160/420 (38%), Gaps = 66/420 (15%)

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQ-----YLILVEGFVGVE 256
           G +P+  +Y ++++ L N GK   A ++   L +M    T        Y  +++GF    
Sbjct: 179 GCVPDVFSYNILLKSLCNQGKSGQADDL---LRMMAEGGTVCSPDVVAYNTVIDGFFKEG 235

Query: 257 RFDEAKSLLNEMRDDGKFPG----RAMRVALERMQEMGFIQGANEFLREM-----LPDKR 307
             ++A  L  EM   G  P      ++  AL + + M     A  FLR+M     LPD  
Sbjct: 236 DVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAM---DKAEAFLRQMVNKGVLPDNW 292

Query: 308 IKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADA 367
             N   Y   S     E       VR+   ++ +  L             P+VV+L    
Sbjct: 293 TYNNLIYGYSSTGQWKE------AVRVFKEMRRQSIL-------------PDVVAL---- 329

Query: 368 KFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDR 427
                  L+  + ++ K  E A   F  +A + G   DV++   ML   A  G +  +  
Sbjct: 330 -----NTLMGSLCKYGKIKE-ARDVFDTMAMK-GQNPDVFSYTIMLNGYATKGCLVDMTD 382

Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLL 487
           L   +  DG+     T  ++I  Y      D A+  F++ R           ++ Y +++
Sbjct: 383 LFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDH----GVKPHVVTYMTVI 438

Query: 488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE 547
             L +  +  DA+    +MI  G+VPD   +  L+  F   G     ++L S +  NG+ 
Sbjct: 439 AALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMR 498

Query: 548 PDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
            D   F  +I   CK               N  L PDA    +L       G+ ++A  V
Sbjct: 499 LDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRV 558



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 6/179 (3%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+  Y   G ++  LS + E  Q+    ST  YNI++    + G+   A   F +
Sbjct: 572 VGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHE 631

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + + G   N  TY++++  L      D A+ +F  L  M +K        ++ G     R
Sbjct: 632 MTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRR 691

Query: 258 FDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREML-----PDKRIKN 310
            +EAK L   +   G  P      + +  + + G ++ A +    M      PD R+ N
Sbjct: 692 VEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLN 750



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 48/98 (48%)

Query: 136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF 195
           V   F  L++ Y+  G L+  +  +NE R         +Y  V++   + GK  +A+E F
Sbjct: 395 VICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKF 454

Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
            Q+ID+G +P+   Y  +I+     G L  A E+ S +
Sbjct: 455 NQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEI 492



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 47/98 (47%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YN++M  Y   GK  +A+  F  ++  G  PN   Y  ++     +G++D  L +F  + 
Sbjct: 539 YNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREML 598

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
              IK ++  Y I+++G     R   AK   +EM + G
Sbjct: 599 QKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESG 636



 Score = 42.0 bits (97), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 78/203 (38%), Gaps = 17/203 (8%)

Query: 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD 466
           Y    ++    R    EL      +L   G+R+       ++  +  +K+ D AL     
Sbjct: 114 YTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLH 173

Query: 467 DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV--PDVQTFSGLMYH 524
                G +     +  Y+ LL++L    +   A ++L  M   G V  PDV  ++ ++  
Sbjct: 174 RTPELGCVPD---VFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDG 230

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPD 572
           F  +GD      LF  + Q G+ PD   +  ++ A CK             + N  ++PD
Sbjct: 231 FFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPD 290

Query: 573 AATKELLKKSLWKEGRRKEAAAV 595
             T   L       G+ KEA  V
Sbjct: 291 NWTYNNLIYGYSSTGQWKEAVRV 313



 Score = 39.3 bits (90), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 2/104 (1%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAI--PNSRTYTVMIEHLVNLGKLDSALEVFS 231
           SYNI++      GK+ +A +  R + + G +  P+   Y  +I+     G ++ A ++F 
Sbjct: 186 SYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFK 245

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            +    I      Y  +V         D+A++ L +M + G  P
Sbjct: 246 EMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLP 289


>gi|242052075|ref|XP_002455183.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
 gi|241927158|gb|EES00303.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
          Length = 892

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 101/505 (20%), Positives = 197/505 (39%), Gaps = 53/505 (10%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N    +AL   L K +R  E + L   +++       V +  L+      G ++  L  +
Sbjct: 334 NLFACNALIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCMF 393

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           +  R++   ++   YN +++ Y +     +A     +++++G  P++ +Y+ +I  L   
Sbjct: 394 DRMREKGIRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLCRK 453

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AM 279
           G L SA+E+   +    +      +  L+ GF      DEA  L ++M D    P     
Sbjct: 454 GDLASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTF 513

Query: 280 RVALERMQEMGFIQGANEFLREML-----PD----KRIKNVRYYEDGSDDDEDENDD--N 328
            V +E    +G ++ A +   +M+     PD    + + +V     G+   ++  DD  N
Sbjct: 514 NVMIEGYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRSLISVLCLTLGAMKAKEFVDDLEN 573

Query: 329 NSGV-------RIAYGV--------QLKPWLDPKALANTLDEWSPEVVSLLA-------- 365
           N  V        + YG             W + +A    LD  S  V+   A        
Sbjct: 574 NCVVLNSFSLTTLMYGFCKEGRLTETYHIWDEMRARGVKLDLISFTVIVYAALKLHDGEK 633

Query: 366 --------DAKFVWTTRL--VCKVLRHFKSPETAWHFFCW-VAYQPGYTHDVYALEKMLT 414
                     K V    +   C +  H K         CW      G + +V     ++ 
Sbjct: 634 ISVLFREMKEKGVKPDNVFHTCMIDVHSKEENIVQALNCWDKMIADGCSPNVVTYTVLIN 693

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFS-TIRLIIDFYGISKKADAALKAFHDDRTLCGP 473
            L + G++     L  ++   G  LP S T    +DF     + + A K  H    L G 
Sbjct: 694 HLCKSGYLSSAQILCEEMLV-GRFLPNSFTYNCFLDFLANEGELEKA-KVLHAT-ILEGC 750

Query: 474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
           ++     + +++L++   K  +   AI++++    SG  PD  ++S ++      GD   
Sbjct: 751 LAN---TVTFNTLIKGFCKAGQIQGAIDLMQNNTESGFFPDCISYSTIINELCKVGDINK 807

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQ 558
             +L++ +   G++PD   + +LI+
Sbjct: 808 AFQLWNEMLYKGLKPDIVAYNILIR 832



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 53/257 (20%), Positives = 101/257 (39%), Gaps = 23/257 (8%)

Query: 348 ALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY 407
           AL  T D  S   V  +A   F+         LR     + A+   C +  + G   +++
Sbjct: 284 ALEMTDDMLSLHFVPSVASCSFMVDG------LRKRGHIDKAFRLACHLG-ELGMVPNLF 336

Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDD 467
           A   ++  L +       +RL   + + G+     T  ++I         D AL  F   
Sbjct: 337 ACNALIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRM 396

Query: 468 RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
           R     ++ +     Y+SL+    +      A  +L EM+  G+ P   ++S L+     
Sbjct: 397 REKGIRVTVYP----YNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLCR 452

Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAAT 575
           +GD     +L   + +NGV  + Y F  LI  +CK             + +S+++P+  T
Sbjct: 453 KGDLASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVT 512

Query: 576 KELLKKSLWKEGRRKEA 592
             ++ +   + G  ++A
Sbjct: 513 FNVMIEGYCRVGNVRKA 529


>gi|11079485|gb|AAG29197.1|AC078898_7 hypothetical protein [Arabidopsis thaliana]
          Length = 441

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 107/275 (38%), Gaps = 31/275 (11%)

Query: 81  NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI--------------- 125
           +  +ALS  + +   PNF HN ++  +L T+L   +  +E+  +                
Sbjct: 39  DPQTALSFSDWISRIPNFKHNVTSYASLVTLLCSQEIPYEVPKITILMIKSCNSVRDALF 98

Query: 126 ----------GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
                     GD    K+      + NL+   +  G +E +   + E  +        ++
Sbjct: 99  VVDFCRTMRKGDSFEIKYKLTPKCYNNLLSSLARFGLVEEMKRLYTEMLEDLVSPDIYTF 158

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           N +++ Y K G   EA +    +I  G  P+  TYT  I       ++D+A +VF  +  
Sbjct: 159 NTLVNGYCKLGYVVEAKQYVTWLIQAGCDPDYFTYTSFITGHCRRKEVDAAFKVFKEMTQ 218

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQG 294
               R    Y  L+ G    ++ DEA SLL +M+DD   P  R   V ++ +   G    
Sbjct: 219 NGCHRNEVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNVRTYTVLIDALCGSGQKSE 278

Query: 295 ANEFLREM-----LPDKRIKNVRYYEDGSDDDEDE 324
           A    ++M      PD  +  V      S D  DE
Sbjct: 279 AMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDE 313



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 97/217 (44%), Gaps = 19/217 (8%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           D+Y    ++    + G+V    + +  L   G    + T    I  +   K+ DAA K F
Sbjct: 154 DIYTFNTLVNGYCKLGYVVEAKQYVTWLIQAGCDPDYFTYTSFITGHCRRKEVDAAFKVF 213

Query: 465 HD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
            +  +  C      +  + Y+ L+  L + K+  +A+++L +M      P+V+T++ L+ 
Sbjct: 214 KEMTQNGC-----HRNEVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNVRTYTVLID 268

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMP 571
                G +     LF  + ++G++PD  M+ VLIQ++C            +++  + LMP
Sbjct: 269 ALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHMLENGLMP 328

Query: 572 DAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
           +  T   L K   K+   K    + +  E+ N VP L
Sbjct: 329 NVITYNALIKGFCKKNVHKAMGLLSKMLEQ-NLVPDL 364



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 44/86 (51%)

Query: 190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV 249
           EA+    ++ D+   PN RTYTV+I+ L   G+   A+ +F  +    IK     Y +L+
Sbjct: 243 EALSLLVKMKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLI 302

Query: 250 EGFVGVERFDEAKSLLNEMRDDGKFP 275
           + F   +  DEA  LL  M ++G  P
Sbjct: 303 QSFCSGDTLDEASGLLEHMLENGLMP 328



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 82/182 (45%), Gaps = 24/182 (13%)

Query: 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRL-IAKLRSDGMRLPFSTI 444
           P+TA  F  W++  P + H+V +   ++T+L        V ++ I  ++S       +++
Sbjct: 40  PQTALSFSDWISRIPNFKHNVTSYASLVTLLCSQEIPYEVPKITILMIKS------CNSV 93

Query: 445 R---LIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM-LLYSSLLRTLTKCKRDFDAI 500
           R    ++DF    +K D+    F           K+KL    Y++LL +L +     +  
Sbjct: 94  RDALFVVDFCRTMRKGDS----FE---------IKYKLTPKCYNNLLSSLARFGLVEEMK 140

Query: 501 NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
            +  EM+   + PD+ TF+ L+  +   G     ++  + + Q G +PD + +   I  +
Sbjct: 141 RLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEAKQYVTWLIQAGCDPDYFTYTSFITGH 200

Query: 561 CK 562
           C+
Sbjct: 201 CR 202


>gi|356523145|ref|XP_003530202.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Glycine max]
          Length = 529

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 97/200 (48%), Gaps = 4/200 (2%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVS--VNFMNLMQWYSTSGDLELVLSTWN 161
           +L+AL   L +++R H L   +   S+ KF  V   V+   L++      ++++ +   +
Sbjct: 152 SLNALLNALVQNKR-HRLAHSVFKSSTEKFRLVPNVVSCNILLKALCKRNEVDVAVRVLD 210

Query: 162 EYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG 221
           E      + +  SY+ V+  +   G    A+  F +++D+G +P+  +YTV++     LG
Sbjct: 211 EMSLMGLVPNVVSYSTVLGGFVFKGDMESAMRVFGEILDKGWMPDVTSYTVLMSGFCRLG 270

Query: 222 KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRV 281
           KL  A+ +   +   R++ +   Y +++E +    +  EA +LL +M + G  P   +  
Sbjct: 271 KLVDAIRMMDLMEENRVQPSEVTYGVMIEAYCKGRKPGEAVNLLEDMVEKGLVPSSVLCC 330

Query: 282 -ALERMQEMGFIQGANEFLR 300
             ++ + E G ++ A E  R
Sbjct: 331 KVVDLLCEEGSVERACEVWR 350



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 90/481 (18%), Positives = 184/481 (38%), Gaps = 78/481 (16%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D  LS+     ++P+ SH    LHAL   L++++R + L++L+  + +            
Sbjct: 68  DPDLSLQIFHHAHPSLSHAPQPLHALFLKLSRARRFYHLESLLTHLPNPP---PEPPLTT 124

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE- 201
           L++ Y  +G     L  + +++     L   S N +++   +  ++  A   F+   ++ 
Sbjct: 125 LIRAYGLAGKPLSALRIFLKFQP----LGVRSLNALLNALVQNKRHRLAHSVFKSSTEKF 180

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
             +PN  +  ++++ L    ++D A+ V   + LM +      Y  ++ GFV     + A
Sbjct: 181 RLVPNVVSCNILLKALCKRNEVDVAVRVLDEMSLMGLVPNVVSYSTVLGGFVFKGDMESA 240

Query: 262 KSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDD 321
             +  E+ D G  P       L      GF +            K +  +R       D 
Sbjct: 241 MRVFGEILDKGWMPDVTSYTVLMS----GFCRLG----------KLVDAIRMM-----DL 281

Query: 322 EDENDDNNSGVRIAYGVQLKPWL---DPKALANTLDEWSPEVVSLLADAKFVWTTRLVCK 378
            +EN    S   + YGV ++ +     P    N L++        + +   V ++ L CK
Sbjct: 282 MEENRVQPS--EVTYGVMIEAYCKGRKPGEAVNLLED--------MVEKGLVPSSVLCCK 331

Query: 379 VLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR 438
           V                                 + +L   G VE    +   +   G R
Sbjct: 332 V---------------------------------VDLLCEEGSVERACEVWRGVVRKGWR 358

Query: 439 LPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD 498
           +  + +  I+ +     K   A      D    G ++    ++ Y++L+  + +  +  +
Sbjct: 359 VGGAVVSTIVHWLCKEGKVVEARGVL--DELEKGEVAS---LMTYNTLIAGMCERGQLCE 413

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A  + +EM+  G VP+  T++ LM  F   GD K   ++   + ++G  P+   F +L+ 
Sbjct: 414 AGRLWDEMVEKGRVPNAFTYNVLMKGFCKVGDVKEAIRVLEEMVESGCLPNKSTFSILVD 473

Query: 559 A 559
            
Sbjct: 474 G 474



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 17/169 (10%)

Query: 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA-DAALKAFH 465
           Y LE +LT L        +  LI      G   P S +R+ + F  +  ++ +A L A  
Sbjct: 104 YHLESLLTHLPNPPPEPPLTTLIRAYGLAGK--PLSALRIFLKFQPLGVRSLNALLNALV 161

Query: 466 DDR-------TLCGPISKFKLM---LLYSSLLRTLTKCKR-DFD-AINVLEEMIFSGIVP 513
            ++              KF+L+   +  + LL+ L  CKR + D A+ VL+EM   G+VP
Sbjct: 162 QNKRHRLAHSVFKSSTEKFRLVPNVVSCNILLKAL--CKRNEVDVAVRVLDEMSLMGLVP 219

Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           +V ++S ++  F  +GD +   ++F  +   G  PD   + VL+  +C+
Sbjct: 220 NVVSYSTVLGGFVFKGDMESAMRVFGEILDKGWMPDVTSYTVLMSGFCR 268


>gi|238480176|ref|NP_001154199.1| uncharacterized protein [Arabidopsis thaliana]
 gi|223635643|sp|Q8LDU5.2|PP298_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g01400, mitochondrial; Flags: Precursor
 gi|332656621|gb|AEE82021.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 466

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 93/223 (41%), Gaps = 23/223 (10%)

Query: 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR 445
           P  A   F + + QP + H   +   ++  L R  +  L+D ++AK RS G  L      
Sbjct: 64  PLLAKEIFDYASQQPNFRHSRSSHLILILKLGRGRYFNLIDDVLAKHRSSGYPLTGEIFT 123

Query: 446 LIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK--CKRDF--DAIN 501
            +I  Y  +K  +  L  F+        + +F        L R L      R +   A  
Sbjct: 124 YLIKVYAEAKLPEKVLSTFYK-------MLEFNFTPQPKHLNRILDVLVSHRGYLQKAFE 176

Query: 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           + +     G++P+ ++++ LM  F L  D  I  +LF  + +  V PD   +K+LIQ +C
Sbjct: 177 LFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFC 236

Query: 562 KY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           +             + N   +PD  +   L  SL ++ + +EA
Sbjct: 237 RKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREA 279



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 77/162 (47%), Gaps = 1/162 (0%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           LMQ +  + DL +    + +  +R  +   +SY I++  + + G+   A+E    ++++G
Sbjct: 196 LMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKG 255

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +P+  +YT ++  L    +L  A ++   + L         Y  ++ GF   +R  +A+
Sbjct: 256 FVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDAR 315

Query: 263 SLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREML 303
            +L++M  +G  P   + R  +  + + G      ++L EM+
Sbjct: 316 KVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMI 357



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 87/194 (44%), Gaps = 1/194 (0%)

Query: 85  ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
           A  I +     PNF H++S+   L   L + +  + +  ++    SS +      F  L+
Sbjct: 67  AKEIFDYASQQPNFRHSRSSHLILILKLGRGRYFNLIDDVLAKHRSSGYPLTGEIFTYLI 126

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV-YAKTGKNFEAVETFRQVIDEGA 203
           + Y+ +   E VLST+ +  +       +  N ++ V  +  G   +A E F+     G 
Sbjct: 127 KVYAEAKLPEKVLSTFYKMLEFNFTPQPKHLNRILDVLVSHRGYLQKAFELFKSSRLHGV 186

Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
           +PN+R+Y ++++       L  A ++F  +    +      Y IL++GF    + + A  
Sbjct: 187 MPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAME 246

Query: 264 LLNEMRDDGKFPGR 277
           LL++M + G  P R
Sbjct: 247 LLDDMLNKGFVPDR 260


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 80/382 (20%), Positives = 157/382 (41%), Gaps = 47/382 (12%)

Query: 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
           + T+ +M+ HL + GK   ALE+   +P    +  +  Y  ++ GF    R   A  ++ 
Sbjct: 41  TTTFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMR 96

Query: 267 EMRD-DGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIK--NVRYYE-DGSDDD 321
           EMR+  G  P +      +    ++G +  A +   EML    +K   V Y    G   D
Sbjct: 97  EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 156

Query: 322 EDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLR 381
           + + D           +  +  +  + +A T+  ++  V +L  D +      LV ++  
Sbjct: 157 QGKLDT---------ALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGG 207

Query: 382 HFKSPET------------------AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVE 423
              +P+                   A   F  ++ + G    V     ++  L++ G V+
Sbjct: 208 KGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRR-GVRATVVTYTSLIYALSKKGQVQ 266

Query: 424 LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM--- 480
             D+L  +    G+R        +I+ +  S   D A +       + G + K ++    
Sbjct: 267 ETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFE-------IMGEMEKKRIAPDD 319

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           + Y++L+R L    R  +A  +++EM   GI PD+ T++ L+  ++++GD K   ++ + 
Sbjct: 320 VTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNE 379

Query: 541 VRQNGVEPDAYMFKVLIQAYCK 562
           +   G  P    +  LIQ  CK
Sbjct: 380 MMNKGFNPTLLTYNALIQGLCK 401



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 92/227 (40%), Gaps = 3/227 (1%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHE-LKTLIGDISSSKFLNVSVNFMN 142
           +AL IM  ++     + NQ T   + +   K  R  E +K     ++  +    +V +  
Sbjct: 90  AALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNA 149

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  Y   G L+  L   +   +R   ++  +YN+++      G+  EA E   ++  +G
Sbjct: 150 LIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKG 209

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  TY ++I      G +  ALE+F  +    ++ T   Y  L+       +  E  
Sbjct: 210 LAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETD 269

Query: 263 SLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRI 308
            L +E    G  P   +  AL       G I  A E + EM   KRI
Sbjct: 270 KLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEM-EKKRI 315



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 69/173 (39%)

Query: 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
           +T + L   L    R  E   L+ ++           +  L+  +   G+++  L  +  
Sbjct: 180 ATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFEN 239

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
             +R    +  +Y  ++   +K G+  E  + F + +  G  P+   Y  +I      G 
Sbjct: 240 MSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGN 299

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +D A E+   +   RI      Y  L+ G   + R DEA+ L++EM   G  P
Sbjct: 300 IDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQP 352



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 3/152 (1%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           L +  I +H+  ++ N D A  IM  ++     + +  T + L   L    R  E + LI
Sbjct: 286 LYNALINSHS--TSGNIDRAFEIMGEMEKK-RIAPDDVTYNTLMRGLCLLGRVDEARKLI 342

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
            +++        V +  L+  YS  GD++  L   NE   +    +  +YN ++    K 
Sbjct: 343 DEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKN 402

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217
           G+  +A    +++++ G  P+  TY  +IE L
Sbjct: 403 GQGDDAENMVKEMVENGITPDDSTYISLIEGL 434



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 11/108 (10%)

Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           L T ++NI++      GK   A+E  RQ+      PN+ TY  +I    + G++ +AL++
Sbjct: 39  LCTTTFNIMLRHLCSAGKPARALELLRQM----PRPNAVTYNTVIAGFCSRGRVQAALDI 94

Query: 230 FSALPLMR----IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
                 MR    I      Y  ++ G+  V R DEA  + +EM   G+
Sbjct: 95  MRE---MRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGE 139



 Score = 42.4 bits (98), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 82/203 (40%), Gaps = 1/203 (0%)

Query: 81  NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNF 140
           N   AL I E + S         T  +L   L+K  +  E   L  +          V +
Sbjct: 229 NVKKALEIFENM-SRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLY 287

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
             L+  +STSG+++       E  ++       +YN +M      G+  EA +   ++  
Sbjct: 288 NALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTK 347

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
            G  P+  TY  +I      G +  AL + + +       T   Y  L++G     + D+
Sbjct: 348 RGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDD 407

Query: 261 AKSLLNEMRDDGKFPGRAMRVAL 283
           A++++ EM ++G  P  +  ++L
Sbjct: 408 AENMVKEMVENGITPDDSTYISL 430



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 12/106 (11%)

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A+ + E M   G+   V T++ L+Y  + +G  +   KLF    + G+ PD  ++  LI 
Sbjct: 233 ALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALIN 292

Query: 559 AYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           ++               +    + PD  T   L + L   GR  EA
Sbjct: 293 SHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEA 338


>gi|32489931|emb|CAE05523.1| OSJNBa0038P21.16 [Oryza sativa Japonica Group]
 gi|38347491|emb|CAE05839.2| OSJNBa0091C07.1 [Oryza sativa Japonica Group]
          Length = 844

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 99/226 (43%), Gaps = 18/226 (7%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D++    ++  L +   ++  +R++ ++   G R    T   +I  Y IS   + +
Sbjct: 275 GIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNES 334

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           ++ F    + CG I         +S +  L K  R  +A  + + M+  G  PD+ ++S 
Sbjct: 335 VRVF-KQMSSCGVIPTVDNC---NSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYST 390

Query: 521 LMYHFALQGDEKI--VQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSN 566
           +++ +A   D  +  V  +F+++   G+ P+ ++F +LI AY +             + N
Sbjct: 391 MLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQN 450

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRG 612
             ++PD  T   +  SL + GR  +A         I   PS A+ G
Sbjct: 451 KGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYG 496



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 88/184 (47%), Gaps = 7/184 (3%)

Query: 96  PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD--L 153
           P   +  S +HAL     K  R +E K +   +         +++  ++  Y+T+ D  L
Sbjct: 348 PTVDNCNSFIHALF----KHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCL 403

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
             V + +N    +    +   +NI+++ YA+ G   +A+  F  + ++G IP++ T+  +
Sbjct: 404 ADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATV 463

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD-DG 272
           I  L  +G+LD AL  F+ +  + +  +   Y  L++G        +AK L++EM + D 
Sbjct: 464 ISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDI 523

Query: 273 KFPG 276
             PG
Sbjct: 524 PPPG 527



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 45/80 (56%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           +SS++  L K  R  +  ++++ M+ +G  P+V TF+ LM  + L G+ +    L   + 
Sbjct: 531 FSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMA 590

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
             G+EP+ Y++  L+  YCK
Sbjct: 591 SIGIEPNCYIYGTLVDGYCK 610



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 26/176 (14%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS----GLMYHFALQGDEKIVQ 535
           +L+ +S+++ L K K    A +++++M+ SGI PD+ T+S    GL    A+   E++++
Sbjct: 245 ILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLE 304

Query: 536 KLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSL 583
           ++     + G  P++  +  LI  Y             K +S+  ++P          +L
Sbjct: 305 QMV----EAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHAL 360

Query: 584 WKEGRRKEAAAVEERCEKINDVP-----SLALRGHIWAVSSADLTRVHSIYRNSIT 634
           +K GR  EA  + +        P     S  L G+  A  S  L  VH+I+   +T
Sbjct: 361 FKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSC-LADVHNIFNLMLT 415



 Score = 43.5 bits (101), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 93/456 (20%), Positives = 164/456 (35%), Gaps = 52/456 (11%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN ++  Y+ +G   E+V  F+Q+   G IP        I  L   G+ + A  +F ++
Sbjct: 317 TYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSM 376

Query: 234 PLMRIKRTSKQYLILVEGFVGV--ERFDEAKSLLNEMRDDGKFPGR-------------- 277
            L   K     Y  ++ G+         +  ++ N M   G  P +              
Sbjct: 377 VLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCG 436

Query: 278 ----AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVR 333
               AM +  E MQ  G I     F   +    RI  +   +D         D       
Sbjct: 437 MMDKAMLI-FEDMQNKGMIPDTVTFATVISSLCRIGRL---DDALHKFNHMVDIGVPPSE 492

Query: 334 IAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFF 393
             YG  ++   +   L    +  S  +   +      + + ++  + +  +  E      
Sbjct: 493 AVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMD 552

Query: 394 CWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGI 453
             V  Q G   +V     ++      G++E    L+  + S G+         ++D Y  
Sbjct: 553 MMV--QTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCK 610

Query: 454 SKKADAALKAFHDD-RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV 512
           + + D AL  F D       P S     +LYS +L  L + +R   A  +  EMI SG  
Sbjct: 611 NGRIDDALTVFRDMLHKGVKPTS-----VLYSIILHGLFQARRTTAAKKMFHEMIESGTT 665

Query: 513 PDVQTF----SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY----- 563
             + T+     GL  +        +++KLF+M     V+ D   F ++I A  K      
Sbjct: 666 VSIHTYGVVLGGLCRNNCTDEANMLLEKLFAM----NVKFDIITFNIVISAMFKVGRRQE 721

Query: 564 -------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                  +S   L+P+  T  ++  +L KE   +EA
Sbjct: 722 AKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEA 757


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           +S L+    K    F+A  VL+ M   G+ P+V T+S LM  ++LQ +    +KLF ++ 
Sbjct: 118 FSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMI 177

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
             G +PD + + +LI  YCK             + +  L PD  +   L   L + GR +
Sbjct: 178 TKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLR 237

Query: 591 EA 592
           EA
Sbjct: 238 EA 239



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 70/142 (49%), Gaps = 1/142 (0%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +++++++++ K G  FEA    + + + G  PN  TY+ ++       ++  A ++F  +
Sbjct: 117 TFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVM 176

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFI 292
                K     Y IL+ G+   +R  EAK L NEM   G  P   +    ++ + ++G +
Sbjct: 177 ITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRL 236

Query: 293 QGANEFLREMLPDKRIKNVRYY 314
           + A++  + ML +  + ++  Y
Sbjct: 237 REAHDLFKNMLTNGNLPDLCTY 258



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 50/97 (51%)

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
             +Y  +++   K G+   A   F+++ + G  P+  TY+ +I+ L    +++ AL++FS
Sbjct: 10  VHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFS 69

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
            +    I      Y  L++G     R+ EA ++LNEM
Sbjct: 70  YMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEM 106



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 16/127 (12%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL--FSM 540
           Y++++  L K      A  + ++M  +G  PDV T+S ++   +L  D ++ + L  FS 
Sbjct: 13  YTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIID--SLCKDRRVNEALDIFSY 70

Query: 541 VRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGR 588
           ++  G+ P+ + +  LIQ  C +            + + N+MP+  T  LL     KEG 
Sbjct: 71  MKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGN 130

Query: 589 RKEAAAV 595
             EA  V
Sbjct: 131 VFEARGV 137



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 53/116 (45%)

Query: 160 WNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219
           +NE   +       SYN ++    + G+  EA + F+ ++  G +P+  TY+++++    
Sbjct: 208 FNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCK 267

Query: 220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            G L  A  +F A+    +K     Y IL++         EA+ L +E+   G  P
Sbjct: 268 QGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQP 323



 Score = 46.2 bits (108), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+    K KR  +A  +  EMI  G+ PD+ +++ L+      G  +    LF  + 
Sbjct: 188 YNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNML 247

Query: 543 QNGVEPDAYMFKVLIQAYCK--YLS----------NSNLMPDAATKELLKKSLWKEGRRK 590
            NG  PD   + +L+  +CK  YL+          ++ L P+     +L  ++ K    K
Sbjct: 248 TNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLK 307

Query: 591 EA 592
           EA
Sbjct: 308 EA 309



 Score = 42.4 bits (98), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 12/116 (10%)

Query: 506 MIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--- 562
           M+  G  PDV T++ ++      G+      LF  + + G +PD   +  +I + CK   
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 563 ---------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA 609
                    Y+    + P+  T   L + L    R +EA+A+      +N +P++ 
Sbjct: 61  VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIV 116


>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
          Length = 590

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 105/246 (42%), Gaps = 16/246 (6%)

Query: 63  NDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELK 122
           N ++L   ++ +A  ++     A+ + E ++ +    H    LHA  TVL  S     L 
Sbjct: 126 NSQILSWLVIFYA--NSRMTQDAIQVFEHMRVHGFKPH----LHA-CTVLLNSLAKARLT 178

Query: 123 TLIGDISSSKFLNVSVN-----FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI 177
            ++  +   K + V V      F  L+     SGD+E      NE   R       +YN 
Sbjct: 179 NMVWKVYK-KMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNT 237

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           ++S+Y K G ++EA+    ++   G  P+  TY  +I      G++  AL +F  +    
Sbjct: 238 LISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREINGAT 297

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGAN 296
               +  Y  L++G+  V   +EA  L   M  +G  PG       L ++ E G I+ AN
Sbjct: 298 PNHVT--YTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDAN 355

Query: 297 EFLREM 302
             L EM
Sbjct: 356 RLLNEM 361



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 97/235 (41%), Gaps = 35/235 (14%)

Query: 388 TAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR-SDGMRLPF---ST 443
            +W FF WV     + H + +   M+  LA+H   +    L+ ++   D +  P    + 
Sbjct: 57  VSWAFFKWVESNLNHXHSLQSSWTMIHTLAKHKQFKTAQNLLERIAVRDYLSSPSVLNAV 116

Query: 444 IRL-------------IIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSS-LLRT 489
           +R+             ++ FY  S+    A++ F   R     +  FK  L   + LL +
Sbjct: 117 VRIHDDPDSNSQILSWLVIFYANSRMTQDAIQVFEHMR-----VHGFKPHLHACTVLLNS 171

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
           L K +       V ++M+  G+VP++  F+ L++     GD +  ++L + +    + PD
Sbjct: 172 LAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPD 231

Query: 550 AYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
            + +  LI  YCK             +    + PD  T   L     +EGR +EA
Sbjct: 232 LFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREA 286



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 14/128 (10%)

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
           F  +  Y++L+    K    ++A+ + + M   G+ PD+ T++ L+Y F  +G  +   +
Sbjct: 229 FPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALR 288

Query: 537 LFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLW 584
           LF  +  NG  P+   +  LI  YC+             +    L P   T   + + L 
Sbjct: 289 LFREI--NGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLC 346

Query: 585 KEGRRKEA 592
           +EG+ K+A
Sbjct: 347 EEGKIKDA 354



 Score = 45.4 bits (106), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 42/80 (52%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+S+LR L +  +  DA  +L EM    + PD  T + L+  +   GD     K+   + 
Sbjct: 338 YNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKML 397

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
           + G++PD + FK LI  +CK
Sbjct: 398 EAGLKPDQFTFKALIHGFCK 417


>gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Glycine max]
          Length = 546

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 89/206 (43%), Gaps = 21/206 (10%)

Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLP-FSTIRLIIDFYGISKKADAALKAFHD 466
           AL   L +L     V+L  +L+   + D  R P      +++ ++  +   D+A +   +
Sbjct: 199 ALSTCLNLLLDSNRVDLARKLLLHAKRDLTRKPNVCVFNILVKYHCKNGDLDSAFEIVEE 258

Query: 467 DRTLCGPISKFKL--MLLYSSLLRTLTKCKRDFDAINVLEEMIF-SGIVPDVQTFSGLMY 523
            R      S+F    ++ YS+L+  L +  R  +A ++ EEM+    IVPD  T++ L+ 
Sbjct: 259 MRN-----SEFSYPNLVTYSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPDPLTYNVLIN 313

Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMP 571
            F   G     + +   ++ NG  P+ Y +  L+   CK             +  S L P
Sbjct: 314 GFCRGGKPDRARNVIQFMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGVLAEIKGSGLKP 373

Query: 572 DAATKELLKKSLWKEGRRKEAAAVEE 597
           DA T   L   L + G+  EA  + E
Sbjct: 374 DAVTYTSLINFLCRNGKSDEAIELLE 399



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 1/136 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE-SYNIVMSVYAKTGKNFEAVETFR 196
           V +  LM     +G ++     + E   R  ++    +YN++++ + + GK   A    +
Sbjct: 270 VTYSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQ 329

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
            +   G  PN   Y+ +++ L  +GKL+ A  V + +    +K  +  Y  L+       
Sbjct: 330 FMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNG 389

Query: 257 RFDEAKSLLNEMRDDG 272
           + DEA  LL EM+++G
Sbjct: 390 KSDEAIELLEEMKENG 405



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 41/80 (51%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS+L+  L K  +  DA  VL E+  SG+ PD  T++ L+      G      +L   ++
Sbjct: 343 YSALVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMK 402

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
           +NG + D+  F VL+   C+
Sbjct: 403 ENGCQADSVTFNVLLGGLCR 422



 Score = 46.6 bits (109), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 83/227 (36%), Gaps = 17/227 (7%)

Query: 85  ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
           A  + E + S  +   +  T + L     +  +    + +I  + S+       N+  L+
Sbjct: 288 AFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSALV 347

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204
                 G LE       E +         +Y  +++   + GK+ EA+E   ++ + G  
Sbjct: 348 DGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKENGCQ 407

Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL 264
            +S T+ V++  L   GK + AL++   LP   +      Y I++           AK L
Sbjct: 408 ADSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKGSYRIVLNSLTQKCELKRAKEL 467

Query: 265 LNEMRDDGKFPGRAMR-----------------VALERMQEMGFIQG 294
           L  M   G  P  A                   VAL  + EMGF  G
Sbjct: 468 LGLMLRRGFQPHYATSNELLVCLCKAGMVDDAAVALFDLVEMGFQPG 514



 Score = 45.4 bits (106), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 56/269 (20%), Positives = 106/269 (39%), Gaps = 44/269 (16%)

Query: 76  LRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLN 135
           ++   +   AL+I   +     F HN +T   +   LA+    H +  ++  ++      
Sbjct: 100 IKREKDPQHALNIFNMVSEQNGFQHNNATYATILDKLARCNNFHAVDRVLHQMTYETCKF 159

Query: 136 VSVNFMNLMQWYSTSGDLELVLSTW--------------------------NEYRQRAKL 169
               F+NLM+ +S S   E +L  +                          N      KL
Sbjct: 160 HEGIFVNLMKHFSKSSLHEKLLHAYFSIQPIVREKPSPKALSTCLNLLLDSNRVDLARKL 219

Query: 170 L-----------STESYNIVMSVYAKTG---KNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
           L           +   +NI++  + K G     FE VE  R    E + PN  TY+ +++
Sbjct: 220 LLHAKRDLTRKPNVCVFNILVKYHCKNGDLDSAFEIVEEMRN--SEFSYPNLVTYSTLMD 277

Query: 216 HLVNLGKLDSALEVFSAL-PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
            L   G++  A ++F  +     I      Y +L+ GF    + D A++++  M+ +G +
Sbjct: 278 GLCRNGRVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCY 337

Query: 275 PGRAMRVAL-ERMQEMGFIQGANEFLREM 302
           P      AL + + ++G ++ A   L E+
Sbjct: 338 PNVYNYSALVDGLCKVGKLEDAKGVLAEI 366



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 12/130 (9%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           L Y+ L+    +  +   A NV++ M  +G  P+V  +S L+      G  +  + + + 
Sbjct: 306 LTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGVLAE 365

Query: 541 VRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGR 588
           ++ +G++PDA  +  LI   C+             +  +    D+ T  +L   L +EG+
Sbjct: 366 IKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKENGCQADSVTFNVLLGGLCREGK 425

Query: 589 RKEAAAVEER 598
            +EA  + E+
Sbjct: 426 FEEALDMVEK 435


>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Vitis vinifera]
          Length = 590

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 105/246 (42%), Gaps = 16/246 (6%)

Query: 63  NDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELK 122
           N ++L   ++ +A  ++     A+ + E ++ +    H    LHA  TVL  S     L 
Sbjct: 126 NSQILSWLVIFYA--NSRMTQDAIQVFEHMRVHGFKPH----LHA-CTVLLNSLAKARLT 178

Query: 123 TLIGDISSSKFLNVSVN-----FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI 177
            ++  +   K + V V      F  L+     SGD+E      NE   R       +YN 
Sbjct: 179 NMVWKVYK-KMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNT 237

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           ++S+Y K G ++EA+    ++   G  P+  TY  +I      G++  AL +F  +    
Sbjct: 238 LISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREINGAT 297

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGAN 296
               +  Y  L++G+  V   +EA  L   M  +G  PG       L ++ E G I+ AN
Sbjct: 298 PNHVT--YTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDAN 355

Query: 297 EFLREM 302
             L EM
Sbjct: 356 RLLNEM 361



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 97/235 (41%), Gaps = 35/235 (14%)

Query: 388 TAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR-SDGMRLPF---ST 443
            +W FF WV     + H + +   M+  LA+H   +    L+ ++   D +  P    + 
Sbjct: 57  VSWAFFKWVESNLNHKHSLQSSWTMIHTLAKHKQFKTAQNLLERIAVRDYLSSPSVLNAV 116

Query: 444 IRL-------------IIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSS-LLRT 489
           +R+             ++ FY  S+    A++ F   R     +  FK  L   + LL +
Sbjct: 117 VRIHDDPDSNSQILSWLVIFYANSRMTQDAIQVFEHMR-----VHGFKPHLHACTVLLNS 171

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
           L K +       V ++M+  G+VP++  F+ L++     GD +  ++L + +    + PD
Sbjct: 172 LAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPD 231

Query: 550 AYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
            + +  LI  YCK             +    + PD  T   L     +EGR +EA
Sbjct: 232 LFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREA 286



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 14/128 (10%)

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
           F  +  Y++L+    K    ++A+ + + M   G+ PD+ T++ L+Y F  +G  +   +
Sbjct: 229 FPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALR 288

Query: 537 LFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLW 584
           LF  +  NG  P+   +  LI  YC+             +    L P   T   + + L 
Sbjct: 289 LFREI--NGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLC 346

Query: 585 KEGRRKEA 592
           +EG+ K+A
Sbjct: 347 EEGKIKDA 354



 Score = 45.4 bits (106), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 44/83 (53%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y+S+LR L +  +  DA  +L EM    + PD  T + L+  +   GD     K+  
Sbjct: 335 VVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKK 394

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK 562
            + + G++PD + FK LI  +CK
Sbjct: 395 KMLEAGLKPDQFTFKALIHGFCK 417


>gi|125560423|gb|EAZ05871.1| hypothetical protein OsI_28108 [Oryza sativa Indica Group]
          Length = 608

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 115/277 (41%), Gaps = 26/277 (9%)

Query: 1   MFSKRFLPAVILSKAFTQLQTRSFVRAPFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSS 60
           M  K + P+VI   A  +    ++ RA    K     RR Q            S    S+
Sbjct: 168 MNKKGYKPSVISQTALME----AYGRAKQYRKAEAVFRRMQ-----------TSGPEPSA 212

Query: 61  LLNDRLLDPFIVTHALRSAPNADSALSIMEAL--KSNPNFSHNQSTLHALATVLAKSQRN 118
           +    +L  F+     + A       +I E L  +   +F  +Q   H +  +  K+   
Sbjct: 213 VTYQIILKSFVEGDKYKEAE------AIFEDLLNEKRASFKPDQKMFHMMIYMYKKAGDY 266

Query: 119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV 178
            + + L   +S       +V F +LM + +   D + V + +++ ++ A      SY+++
Sbjct: 267 AQARKLFAQMSERGIPLSTVTFNSLMSFET---DYKEVSNIYDQMQRTALKPDVVSYSLL 323

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI 238
           +  Y K  +  EA+  F +++D G  P  ++Y ++I+     G ++ A  VF A+   R+
Sbjct: 324 IKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDAFAISGLVEEAHTVFKAMRRHRV 383

Query: 239 KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +     Y  +V  +V     D A+     +++DG  P
Sbjct: 384 EPDLCSYTTMVLAYVNASDMDGAEKFFRRIKEDGLKP 420



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           M+ +  + G      +L A++   G+ L   T   ++ F    K+           RT  
Sbjct: 256 MIYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNSLMSFETDYKEVSNIYDQMQ--RTAL 313

Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
            P      ++ YS L++   K +R+ +A+ V EEM+ +G+ P  ++++ L+  FA+ G  
Sbjct: 314 KPD-----VVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDAFAISGLV 368

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
           +    +F  +R++ VEPD   +  ++ AY
Sbjct: 369 EEAHTVFKAMRRHRVEPDLCSYTTMVLAY 397



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 84/198 (42%), Gaps = 16/198 (8%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           ++T   + G     +R++  +   G +    +   +++ YG +K+   A   F   +T  
Sbjct: 148 LVTAYGKLGDFSRAERVLKYMNKKGYKPSVISQTALMEAYGRAKQYRKAEAVFRRMQT-S 206

Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMI---FSGIVPDVQTFSGLMYHFALQ 528
           GP       + Y  +L++  +  +  +A  + E+++    +   PD + F  ++Y +   
Sbjct: 207 GPEPS---AVTYQIILKSFVEGDKYKEAEAIFEDLLNEKRASFKPDQKMFHMMIYMYKKA 263

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSN---------LMPDAATKELL 579
           GD    +KLF+ + + G+      F  L+     Y   SN         L PD  +  LL
Sbjct: 264 GDYAQARKLFAQMSERGIPLSTVTFNSLMSFETDYKEVSNIYDQMQRTALKPDVVSYSLL 323

Query: 580 KKSLWKEGRRKEAAAVEE 597
            K+  K  R +EA AV E
Sbjct: 324 IKAYGKARREEEALAVFE 341


>gi|255569835|ref|XP_002525881.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534795|gb|EEF36485.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 913

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 12/125 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++++  L K  +  +AI +L+EM    I  DV  ++ L+  +  QG+     K+F  +R
Sbjct: 411 YNNVVDALCKLGKLEEAITLLDEMKMKQINMDVMHYTTLINGYCCQGNVVDAFKVFEEMR 470

Query: 543 QNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRK 590
           +NG+E D   + VL+  +C+            Y+    L P++ T  ++ +SL   G+ K
Sbjct: 471 ENGIEIDVVTYDVLVSGFCRNGLATEALNLLDYMQTQKLKPNSITYNVVVESLCMGGKVK 530

Query: 591 EAAAV 595
           EA AV
Sbjct: 531 EAEAV 535



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 89/433 (20%), Positives = 168/433 (38%), Gaps = 32/433 (7%)

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
           V+  +N+++     L   SYN V+    K GK  EA+    ++  +    +   YT +I 
Sbjct: 392 VVDQFNQFKSLGLFLDGVSYNNVVDALCKLGKLEEAITLLDEMKMKQINMDVMHYTTLIN 451

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                G +  A +VF  +    I+     Y +LV GF       EA +LL+ M+     P
Sbjct: 452 GYCCQGNVVDAFKVFEEMRENGIEIDVVTYDVLVSGFCRNGLATEALNLLDYMQTQKLKP 511

Query: 276 GR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRI 334
                 V +E +   G ++ A E +   + DK + N     +G               R+
Sbjct: 512 NSITYNVVVESLCMGGKVKEA-EAVFNSIEDKSLDNYFAMINGYCKANHTAGAAKLFFRL 570

Query: 335 AYGVQLKPWLDPKALANTLDEWSPEVVSLLAD---------AKFVWTTRLVCKVLR---- 381
           +    +K       L N  +E   + + +L +         +KF++  +L   + R    
Sbjct: 571 SVKGHVKRSCCYNLLKNLCEEGDNDGILMLLETMLNLNVEPSKFIYG-KLFTSLCRAGGA 629

Query: 382 -HFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP 440
              +  ++ +        + G+T D+ A   M+T   R   ++    L   ++  G++  
Sbjct: 630 AGMRKAQSVFDML----LKRGWTPDLIAYTIMITSYCRMNCLKEAVDLFHDMKQRGIKPD 685

Query: 441 FSTIRLIIDFYGIS--KKADAALKAFHDDRTLCGPISKFKLM---------LLYSSLLRT 489
             T  +++D +  +  KK  +A  A   +  +   ++ +  M         + Y+ L+  
Sbjct: 686 LVTFTVLLDGHHKAHIKKVYSAANAKGGNEDIFDALAIWTEMKDTEIKPDVIFYTVLIDG 745

Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
             K     DAI V +EMI  G+ PD+ T++ L+     +GD      L   +   G+ PD
Sbjct: 746 YCKVDSLHDAIGVFDEMIERGLEPDIITYTALLSGCCQRGDVDRAVNLLDQMSLKGISPD 805

Query: 550 AYMFKVLIQAYCK 562
                 L+    K
Sbjct: 806 TRTMSALLHGILK 818



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 69/162 (42%), Gaps = 1/162 (0%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           LM     +  L++ L+ + + ++     +  +Y IV+      G   EA+   +++ + G
Sbjct: 204 LMNSLIKNSKLDMALAVYKQLKRLGLSPNDYTYAIVIKALCINGSLEEAMYVIKEMEESG 263

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P    YT  IE L      D   +V  A     I      Y + V GF    +FD+A+
Sbjct: 264 ITPTGFAYTAYIEGLCVNEMSDLGYQVLQAWKGANIPLDMYAYTVAVRGFCNELKFDKAE 323

Query: 263 SLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREML 303
           S+L +M  +G  P      AL  R  + G +  A  FL EM+
Sbjct: 324 SVLRDMEKEGMVPDMHCYTALICRFCKAGNLLKAYAFLNEMM 365



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 78/192 (40%), Gaps = 4/192 (2%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L K  +  E  TL+ ++   +     +++  L+  Y   G++      + E R+    + 
Sbjct: 418 LCKLGKLEEAITLLDEMKMKQINMDVMHYTTLINGYCCQGNVVDAFKVFEEMRENGIEID 477

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
             +Y++++S + + G   EA+     +  +   PNS TY V++E L   GK+  A  VF+
Sbjct: 478 VVTYDVLVSGFCRNGLATEALNLLDYMQTQKLKPNSITYNVVVESLCMGGKVKEAEAVFN 537

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGF 291
           ++      ++   Y  ++ G+        A  L   +   G          L+ + E G 
Sbjct: 538 SIE----DKSLDNYFAMINGYCKANHTAGAAKLFFRLSVKGHVKRSCCYNLLKNLCEEGD 593

Query: 292 IQGANEFLREML 303
             G    L  ML
Sbjct: 594 NDGILMLLETML 605



 Score = 46.2 bits (108), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 101/237 (42%), Gaps = 24/237 (10%)

Query: 67  LDPFIVTHALRSAPNAD-SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           LD F V   L +  N   SALS    LK +  F H+ ST  A+  +L     + +L+++ 
Sbjct: 64  LDSFKVVDILYNLKNQPISALSFFNQLK-DSGFKHDISTYAAIIRILCYWGLHKQLRSIF 122

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY-----RQRAKLLSTESYNIVMS 180
            DI     + VS N  +      T  ++   L T ++       ++  L  ++ Y+ ++ 
Sbjct: 123 LDI-----IYVSCNDND------TPFEISHFLDTLSDGFVDVDSKKQSLFMSKVYDALVK 171

Query: 181 VYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR 240
            Y   G   +A++   Q+     +P+      ++  L+   KLD AL V+  L  + +  
Sbjct: 172 AYVSVGMFDDAIDVLFQMGRRRFVPHIFICNFLMNSLIKNSKLDMALAVYKQLKRLGLSP 231

Query: 241 TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALE-----RMQEMGF 291
               Y I+++        +EA  ++ EM + G  P G A    +E      M ++G+
Sbjct: 232 NDYTYAIVIKALCINGSLEEAMYVIKEMEESGITPTGFAYTAYIEGLCVNEMSDLGY 288



 Score = 45.4 bits (106), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 27/133 (20%), Positives = 58/133 (43%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  L+  +  +G+L    +  NE   +   ++      ++    + G + E V+ F Q  
Sbjct: 341 YTALICRFCKAGNLLKAYAFLNEMMSKGVKVNCVIVGSILHCLCELGMHSEVVDQFNQFK 400

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
             G   +  +Y  +++ L  LGKL+ A+ +   + + +I      Y  L+ G+       
Sbjct: 401 SLGLFLDGVSYNNVVDALCKLGKLEEAITLLDEMKMKQINMDVMHYTTLINGYCCQGNVV 460

Query: 260 EAKSLLNEMRDDG 272
           +A  +  EMR++G
Sbjct: 461 DAFKVFEEMRENG 473


>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
 gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
          Length = 742

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 122/293 (41%), Gaps = 35/293 (11%)

Query: 21  TRSFVRAPFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAP 80
            R + RA FT+K    L   +     RL    N       ++ + L+  F          
Sbjct: 98  VRGYCRAGFTSKGLELLGEMR-----RLGFSPNK------VVYNTLISSFC------KEG 140

Query: 81  NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVS--- 137
             D A  +++ ++ +   S +  T +A  + L  S +  E   +  D+   + L +    
Sbjct: 141 KTDDAEKLVDEMRKD-GLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDEVLGLPQPN 199

Query: 138 -VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
            + +  ++  +   G LE   + + + +    L++ ESYNI +    + GK  EA    +
Sbjct: 200 IITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEAQLVLK 259

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK------QYLILVE 250
           +++D G  PN  +Y ++++ L   G L      F A  LMR+  +S        Y  L+ 
Sbjct: 260 EMVDMGMEPNVYSYNIVMDGLCKNGVL------FDARMLMRLMTSSGVLPDTVTYTTLLH 313

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREM 302
           G+    +  EA ++L EM  DG  P      + L  + + G I  A E L++M
Sbjct: 314 GYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKM 366



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 80/406 (19%), Positives = 158/406 (38%), Gaps = 39/406 (9%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN+++  + K G   EA   F ++     + N  +Y + +  LV +GKL  A  V   +
Sbjct: 202 TYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEAQLVLKEM 261

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFI 292
             M ++     Y I+++G        +A+ L+  M   G  P       L       G +
Sbjct: 262 VDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKV 321

Query: 293 QGANEFLREML-----PDKRIKNVRYY---EDGSDDDEDENDDNNSGVRIAYGVQLKPWL 344
             AN  LREM+     P+    N+  Y   ++G               RI+   +L   +
Sbjct: 322 SEANNVLREMMRDGCSPNNYTCNILLYSLWKEG---------------RISEAEELLQKM 366

Query: 345 DPKALANTLDEWSPEVV--SLLADAKFVWTTRLVCKVLRHFKSP--ETAWHFFCWVA--- 397
           + K     +D  +  +V   L  + K      +V  +  H  +        +   V    
Sbjct: 367 NEKGY--VIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSD 424

Query: 398 YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA 457
            +     D+ +   +++ L + G V    +   ++    ++   +   + I  +    K 
Sbjct: 425 SRKKCMPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKI 484

Query: 458 DAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
            +A +   D ++  C      K +  Y+SL+  L    + F+   +++EM   G+ PDV 
Sbjct: 485 SSAFRVLKDMEKKGCN-----KTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVS 539

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            ++ ++      G  K    +   + Q G+ P+   F +LI+A+CK
Sbjct: 540 IYNNVLSSLCEGGRVKDAPSVLDEMLQKGISPNISSFSILIKAFCK 585



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 16/165 (9%)

Query: 482 LYSSLLRTLTKCKRDFDAIN-VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           LY+ LLR+ TK  R  D ++ + ++M+ SG+ P+  TF+ L+      G     ++LF  
Sbjct: 23  LYNVLLRSCTKEGR-VDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDDARELFDK 81

Query: 541 VRQNGVEPDAYMFKVLIQAYCKYLSNS------------NLMPDAATKELLKKSLWKEGR 588
           + + G EP+ Y F +L++ YC+    S               P+      L  S  KEG+
Sbjct: 82  MPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLISSFCKEGK 141

Query: 589 RKEAAAVEERCEKINDVPS-LALRGHIWAV-SSADLTRVHSIYRN 631
             +A  + +   K    P  +     I A+ SS  +     I+R+
Sbjct: 142 TDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRD 186



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 101/251 (40%), Gaps = 50/251 (19%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G++ +      +++   + G  +  ++L+ ++R DG+     T    I     S K   A
Sbjct: 121 GFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEA 180

Query: 461 LKAFHD---DRTLCGP---ISKFKLML-----------------------------LYSS 485
            + F D   D  L  P   I  + LML                              Y+ 
Sbjct: 181 SRIFRDMQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNI 240

Query: 486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
            L  L +  +  +A  VL+EM+  G+ P+V +++ +M      G     + L  ++  +G
Sbjct: 241 WLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSG 300

Query: 546 VEPDAYMFKVLIQAYC---KYLSNSNLM---------PDAATKELLKKSLWKEGRRKEAA 593
           V PD   +  L+  YC   K    +N++         P+  T  +L  SLWKEGR  EA 
Sbjct: 301 VLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEA- 359

Query: 594 AVEERCEKIND 604
             EE  +K+N+
Sbjct: 360 --EELLQKMNE 368



 Score = 46.6 bits (109), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 24/104 (23%), Positives = 50/104 (48%)

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
           T ++N+++ +   +G   +A E F ++ ++G  PN  ++ +++      G     LE+  
Sbjct: 56  TYTFNVLIGLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLG 115

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            +  +        Y  L+  F    + D+A+ L++EMR DG  P
Sbjct: 116 EMRRLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSP 159



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 47/105 (44%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YN+++    K G+        + ++  G  P + T+ V+I  L + G LD A E+F  +P
Sbjct: 24  YNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDDARELFDKMP 83

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM 279
               +     + ILV G+       +   LL EMR  G  P + +
Sbjct: 84  EKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVV 128



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 81/210 (38%), Gaps = 22/210 (10%)

Query: 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465
           +Y    +L    + G V+ V  L   + + G+     T  ++I     S   D A + F 
Sbjct: 21  IYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDDARELFD 80

Query: 466 D-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
                 C P +++   +L     R     K     + +L EM   G  P+   ++ L+  
Sbjct: 81  KMPEKGCEP-NEYSFGILVRGYCRAGFTSK----GLELLGEMRRLGFSPNKVVYNTLISS 135

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC---KYLSNSNLM----------- 570
           F  +G     +KL   +R++G+ PD   F   I A C   K L  S +            
Sbjct: 136 FCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDEVLGL 195

Query: 571 --PDAATKELLKKSLWKEGRRKEAAAVEER 598
             P+  T  L+     KEG  +EA A+ E+
Sbjct: 196 PQPNIITYNLMLGGFCKEGMLEEARALFEK 225



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 81/192 (42%), Gaps = 10/192 (5%)

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L+G++    F    V +  L+  +   G  +      +E R+        ++N  +S   
Sbjct: 113 LLGEMRRLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALC 172

Query: 184 KTGKNFEAVETFRQV-IDEG---AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIK 239
            +GK  EA   FR + IDE      PN  TY +M+      G L+ A  +F  + +    
Sbjct: 173 SSGKVLEASRIFRDMQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENL 232

Query: 240 RTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEF 298
              + Y I + G V + +  EA+ +L EM D G  P   +  + ++ + + G +  A   
Sbjct: 233 MNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARML 292

Query: 299 LREM-----LPD 305
           +R M     LPD
Sbjct: 293 MRLMTSSGVLPD 304



 Score = 43.9 bits (102), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 55/106 (51%)

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           ++SS  L  +V +  L+  Y  +G +    +   E  +     +  + NI++    K G+
Sbjct: 296 MTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGR 355

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
             EA E  +++ ++G + ++ T  ++I+ L N GKLD A+E+ + +
Sbjct: 356 ISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGM 401



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 94/510 (18%), Positives = 178/510 (34%), Gaps = 95/510 (18%)

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
           +F  L++ Y  +G     L    E R+     +   YN ++S + K GK  +A +   ++
Sbjct: 93  SFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEM 152

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK----QYLILVEGFVG 254
             +G  P+  T+   I  L + GK+  A  +F  + +  +    +     Y +++ GF  
Sbjct: 153 RKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDEVLGLPQPNIITYNLMLGGFCK 212

Query: 255 VERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRY 313
               +EA++L  +M+       R +  + L  +  +G +  A   L+EM+      NV  
Sbjct: 213 EGMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYS 272

Query: 314 YEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTT 373
           Y    D                             L             +L DA+ +   
Sbjct: 273 YNIVMD----------------------------GLCKN---------GVLFDARMLMRL 295

Query: 374 RLVCKVLRHFKSPETAWHFFCWVA------------YQPGYTHDVYALEKMLTILARHGH 421
                VL    +  T  H +C                + G + + Y    +L  L + G 
Sbjct: 296 MTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGR 355

Query: 422 VELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH---------------- 465
           +   + L+ K+   G  +   T  ++ID    + K D A++  +                
Sbjct: 356 ISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNS 415

Query: 466 --------DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
                   D R  C P      ++ YS+++  L K  R  +A     EM+   + PD   
Sbjct: 416 YIGLVDDSDSRKKCMPD-----LISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAI 470

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI-------QAYCKY-----LS 565
           +   ++ F  +G      ++   + + G       +  LI       Q +  Y     + 
Sbjct: 471 YDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMR 530

Query: 566 NSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
              + PD +    +  SL + GR K+A +V
Sbjct: 531 ERGVSPDVSIYNNVLSSLCEGGRVKDAPSV 560


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 105/242 (43%), Gaps = 14/242 (5%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           L+D + + + ++ A +  +A+S+M         + +  T   L     K++   E   L 
Sbjct: 310 LMDGYFLVYEVKKAQHVFNAMSLM-------GVTPDVHTYTILINGFCKNKMVDEALNLF 362

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
            ++     +   V + +L+     SG +  V    +E R R +     +Y+ ++    K 
Sbjct: 363 KEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKN 422

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
           G    A+  F ++ D+   PN  T+T++++ L   G+L  A EVF  L           Y
Sbjct: 423 GHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTY 482

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGKFPG----RAMRVALERMQEMGFIQGANEFLRE 301
            +++ G       +EA ++L++M D+G  P       + +AL +  E      A + LR+
Sbjct: 483 NVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDEN---DKAEKLLRQ 539

Query: 302 ML 303
           M+
Sbjct: 540 MI 541



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 62/139 (44%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+  +   G L+  +   NE   +    +  +YNI++    K GK  EA      
Sbjct: 235 VTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAV 294

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++     P+  TY+ +++    + ++  A  VF+A+ LM +      Y IL+ GF   + 
Sbjct: 295 MLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKM 354

Query: 258 FDEAKSLLNEMRDDGKFPG 276
            DEA +L  EM      PG
Sbjct: 355 VDEALNLFKEMHQKNMVPG 373



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 8/164 (4%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD-- 458
           GY  D   L  ++  L   G V+       KL + G +L   +   +I+  G+ K  D  
Sbjct: 124 GYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLIN--GVCKIGDTR 181

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
           AA+K     R + G ++K  + ++Y++++  + K +   +A  +  EM   GI  DV T+
Sbjct: 182 AAIKFL---RKIDGRLTKPDV-VMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTY 237

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           + L+Y F + G  K    L + +    + P+ Y + +L+ A CK
Sbjct: 238 NTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCK 281



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 12/118 (10%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+  L K  +  +A +VL  M+ + + PDV T+S LM  + L  + K  Q +F+ + 
Sbjct: 272 YNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMS 331

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGR 588
             GV PD + + +LI  +CK             +   N++P   T   L   L K GR
Sbjct: 332 LMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGR 389



 Score = 42.7 bits (99), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 43/221 (19%), Positives = 89/221 (40%), Gaps = 5/221 (2%)

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
           NPN      T + L   L K  +  E K+++  +  +      + +  LM  Y    +++
Sbjct: 266 NPNVY----TYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVK 321

Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
                +N            +Y I+++ + K     EA+  F+++  +  +P   TY+ +I
Sbjct: 322 KAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLI 381

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
           + L   G++    ++   +           Y  L++G       D A +L N+M+D    
Sbjct: 382 DGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIR 441

Query: 275 PGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
           P      + L+ + + G ++ A E  +++L      NV  Y
Sbjct: 442 PNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTY 482



 Score = 42.7 bits (99), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 80/203 (39%), Gaps = 16/203 (7%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           +VY    ++  L + G V+    ++A +    ++    T   ++D Y +  +   A   F
Sbjct: 268 NVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVF 327

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
            +  +L G          Y+ L+    K K   +A+N+ +EM    +VP + T+S L+  
Sbjct: 328 -NAMSLMGVTPDVHT---YTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDG 383

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPD 572
               G    V  L   +R  G   D   +  LI   CK             + +  + P+
Sbjct: 384 LCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPN 443

Query: 573 AATKELLKKSLWKEGRRKEAAAV 595
             T  +L   L K GR K+A  V
Sbjct: 444 IFTFTILLDGLCKGGRLKDAQEV 466


>gi|326531238|dbj|BAK04970.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 660

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 101/249 (40%), Gaps = 18/249 (7%)

Query: 379 VLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR 438
           V+R     ETA  F+ W   +PG+ H  +A+  ++++L   G+  L+   +  +RS G+ 
Sbjct: 93  VVRGLSDSETAVRFYWWAESRPGFDHSQFAIAYIVSLLFVDGNFALLSEFLGTVRSQGVA 152

Query: 439 LPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD 498
           L  S  R+++  Y  + K D+ +  F  D  +     +F +   Y+  +  L K    FD
Sbjct: 153 LHRSLYRILLSGYVRAGKFDSVIGTF--DEMVMSGCREFGID--YNRYIGVLIK-NCCFD 207

Query: 499 AINVLEEMIFS-GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
            +     M  S G+     T+S  +         ++V++L + + + G  PD +   + I
Sbjct: 208 LVEKYYGMALSKGLCLTPFTYSRWISALCQSNRIELVEELLADMDRFGFSPDIWACNIYI 267

Query: 558 QAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDV 605
              CK             +     +PD  T   +   L    R  EA  + E   K+   
Sbjct: 268 DCLCKQNRLHDALQMVEKMRGKGTIPDVVTYTTVVGCLCNNKRFSEAVGLWEEMVKMGLK 327

Query: 606 PSLALRGHI 614
           P +   G +
Sbjct: 328 PDVVACGAL 336



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 117/593 (19%), Positives = 224/593 (37%), Gaps = 86/593 (14%)

Query: 37  LRRAQLIDSIRLAVRSNSSNSLSSLLN-DRL---LDPFIVTHALRSAPNADSALSIMEAL 92
           L R   +D  R+ +R+  S++ S  +  +RL   LDPF+V   +R   ++++A+      
Sbjct: 51  LFRPVRMDISRVILRALESSTCSEPVELERLDIELDPFVVNLVVRGLSDSETAVRFYWWA 110

Query: 93  KSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD 152
           +S P F H+Q    A+A +++                    L V  NF  L ++  T   
Sbjct: 111 ESRPGFDHSQ---FAIAYIVS-------------------LLFVDGNFALLSEFLGT--- 145

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
                      R +   L    Y I++S Y + GK    + TF +++  G       Y  
Sbjct: 146 ----------VRSQGVALHRSLYRILLSGYVRAGKFDSVIGTFDEMVMSGCREFGIDYNR 195

Query: 213 MIEHLVNLGKLDSALEVFSALPLMR-IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
            I  L+     D  +E +  + L + +  T   Y   +       R +  + LL +M   
Sbjct: 196 YIGVLIKNCCFD-LVEKYYGMALSKGLCLTPFTYSRWISALCQSNRIELVEELLADMDRF 254

Query: 272 GKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNS 330
           G  P   A  + ++ + +   +  A + + +M     I +V  Y             NN 
Sbjct: 255 GFSPDIWACNIYIDCLCKQNRLHDALQMVEKMRGKGTIPDVVTYTTVVG-----CLCNNK 309

Query: 331 GVRIAYGV---QLKPWLDPKALA----------NTLDEWSPEVVSLLADAKFVWTTRLVC 377
               A G+    +K  L P  +A          N+  E + E+ S +       +  +  
Sbjct: 310 RFSEAVGLWEEMVKMGLKPDVVACGALIFGLCKNSKVEEAFELASRMLSLNIELSVSIYN 369

Query: 378 KVLRHF---KSPETAWHFFCWV---AYQPGYTHDVYALEKMLTILARHGHVELVDRLIAK 431
            ++  F    S + A+    ++     +PG       L    TI    G +E  + LI K
Sbjct: 370 ALISGFWRAGSIDKAYTIISFMRTNGCEPGVVTYNILLNHYCTI----GMMEKAENLITK 425

Query: 432 LRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLT 491
           + + G+     +   ++     + + D A  AF  D      +  F  ++  + L+    
Sbjct: 426 METSGVNPDRYSYNQLLKGLCKTHQLDKAF-AFVSDHM---EVGGFCDIVSCNILIDAFC 481

Query: 492 KCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAY 551
           K K+   A+ + +EM + G+  D  T+  L+      G   + ++LF  + +  ++P+  
Sbjct: 482 KVKKVKSALELFKEMDYKGMQADAVTYGTLINGLFSVGYYNLAEELFEQMLKAQIDPNVN 541

Query: 552 MFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           ++ +++   CK            ++    ++PD  T   L   L K  R  EA
Sbjct: 542 LYNIMLHHLCKVGDLKRAQKIFLHMIQKEILPDIVTYNTLIYWLGKNSRAMEA 594



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 36/78 (46%)

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
           LY+ +L  L K      A  +   MI   I+PD+ T++ L+Y             LF  +
Sbjct: 542 LYNIMLHHLCKVGDLKRAQKIFLHMIQKEILPDIVTYNTLIYWLGKNSRAMEALDLFKDM 601

Query: 542 RQNGVEPDAYMFKVLIQA 559
           R  GVEPD+  FK LI  
Sbjct: 602 RTKGVEPDSLTFKYLING 619


>gi|255582522|ref|XP_002532046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528289|gb|EEF30336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 478

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 84/172 (48%), Gaps = 3/172 (1%)

Query: 393 FCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYG 452
           F W+  Q  Y  D     K+++++ + G   +   L +++R+ G R   S    +I  + 
Sbjct: 119 FRWMQKQRWYIADSGVYSKLISVMGKKGQTRMAMWLFSEMRNSGCRPDSSVYNALITAHL 178

Query: 453 ISK-KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
            SK KA A +KA      + G       ++ Y+ LLR   +  R+ + +N L + +   I
Sbjct: 179 HSKDKAKALIKALGYFEKMKGMQRCQPNVVTYNILLRAFAQA-RNVNQVNALFKDLDQSI 237

Query: 512 V-PDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           V PD+ T++G+M  +   G  + ++ + S ++ N  +PD   F +LI +Y K
Sbjct: 238 VSPDIYTYNGVMDAYGKNGMIREMESVLSRMKSNQCKPDIITFNLLIDSYGK 289



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 38/202 (18%), Positives = 84/202 (41%), Gaps = 24/202 (11%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           D+Y    ++    ++G +  ++ ++++++S+  +    T  L+ID YG  +  D   + F
Sbjct: 241 DIYTYNGVMDAYGKNGMIREMESVLSRMKSNQCKPDIITFNLLIDSYGKKQDFDKMEQVF 300

Query: 465 ----HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
               H       P         ++S++    K ++  +A +VL++M      P+  T+  
Sbjct: 301 KSLLHSKERPTLPT--------FNSMITNYGKARQKENAESVLQKMTKMKYTPNFITYES 352

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSN 568
           L+  +         +++F  + ++G E        ++  YC                N  
Sbjct: 353 LIMMYGFCDSVSKAREIFDDMIESGKEVKVSTLNAMLDVYCLNGLPMEADLLFDNARNVG 412

Query: 569 LMPDAATKELLKKSLWKEGRRK 590
           L+PD+ T +LL K+  K   +K
Sbjct: 413 LLPDSTTYKLLYKAYTKANMKK 434


>gi|125537564|gb|EAY84052.1| hypothetical protein OsI_39281 [Oryza sativa Indica Group]
          Length = 762

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 102/253 (40%), Gaps = 18/253 (7%)

Query: 378 KVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM 437
           +VL+       A  FF W+  QPG+ HD ++   M+ IL +      + +L+ ++ S   
Sbjct: 338 QVLKLLHDHTIALGFFQWLKRQPGFKHDGHSYTTMIGILGQARQFGTMRKLLDEMNSVHC 397

Query: 438 RLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDF 497
           +    T   II  YG +     A+K F + +       +    + Y +L+    K     
Sbjct: 398 KPTVVTYNRIIHAYGRANYLREAVKVFEEMQKAGYEPDR----VTYCTLIDIHAKGGYLE 453

Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
            A+++   M   G+ PD  T+S ++      G      KLF  + +NG  P+   + ++I
Sbjct: 454 VAMDLYTRMQEVGLSPDTFTYSAMVNCLGKGGHLAAAYKLFCEMVENGCTPNLVTYNIMI 513

Query: 558 --QAYCKYLSN----------SNLMPDAATKELLKKSLWKEGRRKEAAAV--EERCEKIN 603
             QA  +   N          +   PD  T  ++ + L   G   EA AV  E R +   
Sbjct: 514 ALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRHDWAP 573

Query: 604 DVPSLALRGHIWA 616
           D P   L   +W 
Sbjct: 574 DEPVYGLLVDLWG 586



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/240 (18%), Positives = 100/240 (41%), Gaps = 1/240 (0%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           +D F     L+   +   AL   + LK  P F H+  +   +  +L ++++   ++ L+ 
Sbjct: 331 IDAFQANQVLKLLHDHTIALGFFQWLKRQPGFKHDGHSYTTMIGILGQARQFGTMRKLLD 390

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
           +++S       V +  ++  Y  +  L   +  + E ++        +Y  ++ ++AK G
Sbjct: 391 EMNSVHCKPTVVTYNRIIHAYGRANYLREAVKVFEEMQKAGYEPDRVTYCTLIDIHAKGG 450

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
               A++ + ++ + G  P++ TY+ M+  L   G L +A ++F  +           Y 
Sbjct: 451 YLEVAMDLYTRMQEVGLSPDTFTYSAMVNCLGKGGHLAAAYKLFCEMVENGCTPNLVTYN 510

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPD 305
           I++        ++    L  +M+  G  P +    + +E +   G +  A     EM  D
Sbjct: 511 IMIALQAKARNYENVVKLYKDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRHD 570



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 15/127 (11%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI-RLIIDFYGISKKADA 459
           G+  D      ++ +L   GH++  + +  ++R D    P   +  L++D +G +   D 
Sbjct: 536 GFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRHD--WAPDEPVYGLLVDLWGKAGNVDK 593

Query: 460 ALKAFH----DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
           AL  +H    D      P          +SLL    K  R  DA +VL+ M+  G+VP +
Sbjct: 594 ALGWYHAMLQDGLQPNVPTC--------NSLLSAFLKINRFQDAYSVLQNMLAQGLVPSL 645

Query: 516 QTFSGLM 522
           QT++ L+
Sbjct: 646 QTYTLLL 652


>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 65/144 (45%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           + +L+  Y   G L L    ++E  +R    +  +YNI++    + G+  +A     ++ 
Sbjct: 215 YNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMK 274

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
                P +RT+ ++++ L N G+LD AL     L L+ +  T   Y IL+ GF  V    
Sbjct: 275 RAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSS 334

Query: 260 EAKSLLNEMRDDGKFPGRAMRVAL 283
               L+ EM D G  P +     L
Sbjct: 335 VVSELVREMEDRGISPSKVTYTIL 358



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 79/184 (42%), Gaps = 17/184 (9%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLL----STESYNIVMSVYAKTGKNFEAVETF 195
           F  LM     +G L+  LS    Y ++ KL+    +  +YNI++S ++K G +    E  
Sbjct: 285 FNMLMDGLCNTGQLDKALS----YLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELV 340

Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
           R++ D G  P+  TYT+++   V    ++ A E+F  +  + +      Y +L+ G    
Sbjct: 341 REMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIK 400

Query: 256 ERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGAN-----EFLREMLPDKRIKN 310
               EA  L   M +    P   +   +      G+ +  N     +FL EM+ +    N
Sbjct: 401 GNMVEASKLYKSMVEMHLQPNDVIYNTMIN----GYCKECNSYKALKFLEEMVKNGVTPN 456

Query: 311 VRYY 314
           V  Y
Sbjct: 457 VASY 460



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 5/146 (3%)

Query: 162 EYRQRAKLLST----ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217
           E  Q+ KL+       +YN +++ Y + GK   A + F ++   G   N+ TY ++I  L
Sbjct: 198 ELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGL 257

Query: 218 VNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR 277
              G++  A  +   +    I  T++ + +L++G     + D+A S L +++  G  P  
Sbjct: 258 CRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTL 317

Query: 278 AM-RVALERMQEMGFIQGANEFLREM 302
               + +    ++G     +E +REM
Sbjct: 318 VTYNILISGFSKVGNSSVVSELVREM 343



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 1/139 (0%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           S +F N +   + SG+L+     + EY  R +     S+ I +  + + G   +  E   
Sbjct: 73  SFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQF-DVYSFWITIKAFCENGNVSKGFELLA 131

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           Q+   G  PN   YT++IE     G +D A  +FS +  + +      Y I++ GF    
Sbjct: 132 QMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKG 191

Query: 257 RFDEAKSLLNEMRDDGKFP 275
              +   L  +M+  G  P
Sbjct: 192 YKKDGFELYQKMKLVGVLP 210



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 54/280 (19%), Positives = 111/280 (39%), Gaps = 24/280 (8%)

Query: 344 LDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYT 403
           L  + L  +LD +   V+   + + F +   L   +L    + +  W FF    Y     
Sbjct: 49  LQSQLLEQSLDGFKLMVLKGHSPSSFSFNNAL--DLLAKSGNLDRTWGFF--TEYLGRTQ 104

Query: 404 HDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKA 463
            DVY+    +     +G+V     L+A++ + G+        ++I+    +   D A   
Sbjct: 105 FDVYSFWITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVM 164

Query: 464 FH--DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGL 521
           F   DD  L           +Y+ ++    K     D   + ++M   G++P++ T++ L
Sbjct: 165 FSRMDDLGLAAN------QYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSL 218

Query: 522 MYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNL 569
           +  +   G   +  K+F  + + GV  +A  + +LI   C+             +  +++
Sbjct: 219 ITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHI 278

Query: 570 MPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA 609
            P   T  +L   L   G+  +A +  E+ + I   P+L 
Sbjct: 279 NPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLV 318



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 74/166 (44%), Gaps = 1/166 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+  +S  G+  +V     E   R    S  +Y I+M+ + ++    +A E F  
Sbjct: 318 VTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHL 377

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G +P+  TY V+I  L   G +  A +++ ++  M ++     Y  ++ G+     
Sbjct: 378 MKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECN 437

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVA-LERMQEMGFIQGANEFLREM 302
             +A   L EM  +G  P  A  ++ ++ + + G    A   L+EM
Sbjct: 438 SYKALKFLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEM 483



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           Y I+++ + K G   +  E ++++   G +PN  TY  +I      GKL  A +VF  + 
Sbjct: 180 YTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEIS 239

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
              +   +  Y IL+ G     +  +A+ LL  M+
Sbjct: 240 KRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMK 274



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 63/146 (43%), Gaps = 4/146 (2%)

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
           L R G V   + L+ +++   +     T  +++D    + + D AL      +     I 
Sbjct: 257 LCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKL----IG 312

Query: 476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ 535
               ++ Y+ L+   +K         ++ EM   GI P   T++ LM  F    D +   
Sbjct: 313 LCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAY 372

Query: 536 KLFSMVRQNGVEPDAYMFKVLIQAYC 561
           ++F ++++ G+ PD + + VLI   C
Sbjct: 373 EMFHLMKRIGLVPDQHTYGVLIHGLC 398



 Score = 39.3 bits (90), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 31/151 (20%), Positives = 62/151 (41%), Gaps = 24/151 (15%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+ T  +      A  +   M   G+VPD  T+  L++   ++G+     KL+  + 
Sbjct: 355 YTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMV 414

Query: 543 QNGVEPDAYMFKVLIQAYCKYLSN------------SNLMPDAATKELLKKSLWKEGRRK 590
           +  ++P+  ++  +I  YCK  ++            + + P+ A+     + L K+G+  
Sbjct: 415 EMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGVTPNVASYISTIQILCKDGKSI 474

Query: 591 EAAAV------------EERCEKINDVPSLA 609
           EA  +            E  C K+    S A
Sbjct: 475 EAKRLLKEMTEAGLKPPESLCSKVGQAKSCA 505


>gi|224130680|ref|XP_002320901.1| predicted protein [Populus trichocarpa]
 gi|222861674|gb|EEE99216.1| predicted protein [Populus trichocarpa]
          Length = 475

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 95/220 (43%), Gaps = 17/220 (7%)

Query: 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR 445
           P  A   F + + QP + H   +   ++  L R  +   +D L+  L+S    +  +   
Sbjct: 80  PLLAKEIFDYASRQPNFQHSYSSYLILILKLGRAKYFSFIDDLLTDLKSKNYPVTPTLFS 139

Query: 446 LIIDFYGISKKADAALKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLE 504
            II+ YG +   D ALK F+      C P  K  L  +   L+      K  FD   + +
Sbjct: 140 YIINIYGEANLPDKALKIFYTILKFDCNPSPK-HLNGILEILVSHQNYIKPAFD---LFK 195

Query: 505 EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY- 563
           +     + P+ ++++ L+  F L G   +   LF+ + +  V PD   +++L+QA C+  
Sbjct: 196 DAHTYDVFPNTKSYNILIRAFCLNGQISMAYSLFNQMFKRDVMPDVESYRILMQALCRKS 255

Query: 564 -----------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
                      + N   +PDA +   L  SL ++ + +EA
Sbjct: 256 QVNGAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLREA 295



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 74/162 (45%), Gaps = 1/162 (0%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L++ +  +G + +  S +N+  +R  +   ESY I+M    +  +   AV+    ++++G
Sbjct: 212 LIRAFCLNGQISMAYSLFNQMFKRDVMPDVESYRILMQALCRKSQVNGAVDLLEDMLNKG 271

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +P++ +YT ++  L    KL  A ++   + +         Y  ++ GF    R  +A 
Sbjct: 272 YVPDALSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIIHYNTVILGFCREGRAMDAC 331

Query: 263 SLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREML 303
            +L +M  +G  P   + R  +  + + G    A   L EM+
Sbjct: 332 KVLEDMESNGCMPNLVSYRTLVGGLCDQGMFDEAKSHLEEMM 373



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 7/129 (5%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YN V+  + + G+  +A +    +   G +PN  +Y  ++  L + G  D   E  S L 
Sbjct: 314 YNTVILGFCREGRAMDACKVLEDMESNGCMPNLVSYRTLVGGLCDQGMFD---EAKSHLE 370

Query: 235 LMRIKRTSKQYLI---LVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMG 290
            M +K  S  + +   L++GF  V + +EA  ++ E+   G+ P     V +  R+ E+ 
Sbjct: 371 EMMMKGFSPHFAVSNALIKGFCNVGKIEEACGVVEELLKHGEAPHTETWVMMVSRICEVD 430

Query: 291 FIQGANEFL 299
            +Q   E L
Sbjct: 431 DLQRIGEIL 439



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 12/124 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y  L++ L +  +   A+++LE+M+  G VPD  +++ L+     +   +   KL   ++
Sbjct: 244 YRILMQALCRKSQVNGAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLREAYKLLCRMK 303

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
             G  PD   +  +I  +C+             + ++  MP+  +   L   L  +G   
Sbjct: 304 VKGCNPDIIHYNTVILGFCREGRAMDACKVLEDMESNGCMPNLVSYRTLVGGLCDQGMFD 363

Query: 591 EAAA 594
           EA +
Sbjct: 364 EAKS 367



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 62/162 (38%), Gaps = 16/162 (9%)

Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           L Y++LL +L + K+  +A  +L  M   G  PD+  ++ ++  F  +G      K+   
Sbjct: 277 LSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIIHYNTVILGFCREGRAMDACKVLED 336

Query: 541 VRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGR 588
           +  NG  P+   ++ L+   C            + +      P  A    L K     G+
Sbjct: 337 MESNGCMPNLVSYRTLVGGLCDQGMFDEAKSHLEEMMMKGFSPHFAVSNALIKGFCNVGK 396

Query: 589 RKEAAAVEERCEKINDVPSLALRGHIWAVSSADLTRVHSIYR 630
            +EA  V E   K  + P        W +  + +  V  + R
Sbjct: 397 IEEACGVVEELLKHGEAP----HTETWVMMVSRICEVDDLQR 434



 Score = 40.4 bits (93), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 50/259 (19%), Positives = 94/259 (36%), Gaps = 53/259 (20%)

Query: 85  ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
           A  I +     PNF H+ S+   L   L +++    +  L+ D+ S  +      F  ++
Sbjct: 83  AKEIFDYASRQPNFQHSYSSYLILILKLGRAKYFSFIDDLLTDLKSKNYPVTPTLFSYII 142

Query: 145 QWYSTS--------------------------GDLELVLSTWNEYRQRAKLL-------- 170
             Y  +                          G LE+++S  N  +    L         
Sbjct: 143 NIYGEANLPDKALKIFYTILKFDCNPSPKHLNGILEILVSHQNYIKPAFDLFKDAHTYDV 202

Query: 171 --STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALE 228
             +T+SYNI++  +   G+   A   F Q+     +P+  +Y ++++ L    +++ A++
Sbjct: 203 FPNTKSYNILIRAFCLNGQISMAYSLFNQMFKRDVMPDVESYRILMQALCRKSQVNGAVD 262

Query: 229 VFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP------------- 275
           +   +        +  Y  L+      ++  EA  LL  M+  G  P             
Sbjct: 263 LLEDMLNKGYVPDALSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIIHYNTVILGFC 322

Query: 276 --GRAMRVA--LERMQEMG 290
             GRAM     LE M+  G
Sbjct: 323 REGRAMDACKVLEDMESNG 341


>gi|296084463|emb|CBI25022.3| unnamed protein product [Vitis vinifera]
          Length = 927

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 84/428 (19%), Positives = 174/428 (40%), Gaps = 38/428 (8%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           F  ++ +Y+  GD+     T+   R R    ++  Y  ++  YA      EA+   R++ 
Sbjct: 271 FGLMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCVRKMK 330

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           +EG   +  TY++++     +   ++A   F           +  Y  ++          
Sbjct: 331 EEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAHCQACNMT 390

Query: 260 EAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSD 319
           +A++L+ EM ++    G    + +      G+    NE    ++ D R+K   +      
Sbjct: 391 QAEALVREMEEE----GIDAPIDIYHTMMDGYTIIGNEEKCLIVFD-RLKECGF------ 439

Query: 320 DDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKV 379
                     +   I+YG  +  ++    ++  L     EV  ++  A      +    +
Sbjct: 440 ----------TPSVISYGCLINLYIKIGKVSKAL-----EVSKMMEVAGIKHNMKTYSML 484

Query: 380 LRHF---KSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
           +  F   K    A+  F  V  + G   DV     ++      G+++   R + +++ + 
Sbjct: 485 INGFVRLKDWANAFAVFEDVV-KDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKER 543

Query: 437 MRLPFSTIRLIIDFYGISKKADAALKAFHDDR-TLCGP-ISKFKLMLLYSSLLRTLTKCK 494
            R    T   II  +  S     AL+ F   R + C P +  F  ++L       + KC+
Sbjct: 544 HRPTTRTFMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALIL-----GLVEKCQ 598

Query: 495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK 554
            +  A+ +L+EM  +GI P+  T++ +M+ +A  GD     + F+ ++  G+E D Y ++
Sbjct: 599 ME-KAVEILDEMSLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYE 657

Query: 555 VLIQAYCK 562
            L++A CK
Sbjct: 658 ALLKACCK 665



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 63/137 (45%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L++    SG ++  L+   E   +    +T  YNI++  +A+ G  +EA E  +Q+  EG
Sbjct: 659 LLKACCKSGRMQSALAVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEG 718

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  TYT  I      G +  A +    + ++ +K   K Y  L+ G+      ++A 
Sbjct: 719 VQPDIHTYTSFINACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTLIHGWARASLPEKAL 778

Query: 263 SLLNEMRDDGKFPGRAM 279
               EM+  G  P +A+
Sbjct: 779 KCFQEMKSAGLKPDKAV 795



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y  +M  YA  G   +A E F ++  EG   +  TY  +++     G++ SAL V   +
Sbjct: 620 TYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREM 679

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              +I R +  Y IL++G+       EA  L+ +M+ +G  P
Sbjct: 680 SSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQP 721



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/129 (22%), Positives = 57/129 (44%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           FM ++  ++ SGD+   L  ++  R    + +  ++N ++    +  +  +AVE   ++ 
Sbjct: 551 FMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMS 610

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
             G  PN  TYT ++    +LG    A E F+ L    ++     Y  L++      R  
Sbjct: 611 LAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQ 670

Query: 260 EAKSLLNEM 268
            A ++  EM
Sbjct: 671 SALAVTREM 679



 Score = 42.4 bits (98), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 74/182 (40%), Gaps = 21/182 (11%)

Query: 419 HGHVELVD-----RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGP 473
           HG+  L D         KL+++G+ L   T   ++     S +  +AL    +  +   P
Sbjct: 626 HGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIP 685

Query: 474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
            + F    +Y+ L+    +    ++A  ++++M   G+ PD+ T++  +      GD + 
Sbjct: 686 RNTF----VYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQR 741

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKK 581
             K    +   GV+P+   +  LI  + +             + ++ L PD A    L  
Sbjct: 742 ATKTIQEMEVVGVKPNIKTYTTLIHGWARASLPEKALKCFQEMKSAGLKPDKAVYHCLMT 801

Query: 582 SL 583
           SL
Sbjct: 802 SL 803



 Score = 38.9 bits (89), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 2/107 (1%)

Query: 165 QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK-L 223
           +R K  S + + ++++ YA+ G    A  TF  +   G  P S  YT +I H   +G+ +
Sbjct: 261 ERIKKPSRKEFGLMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLI-HAYAVGRDM 319

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
           + AL     +    I+ +   Y ILV GF  +   + A     E ++
Sbjct: 320 EEALSCVRKMKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKE 366


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 88/205 (42%), Gaps = 18/205 (8%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G +  V+    ++  LAR G +E    L  ++++ G+R    T   +ID YG       A
Sbjct: 246 GLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGA 305

Query: 461 LKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           +  F + +   C P      ++ Y+SL+    K +R   A   L  M   G+ P+V T+S
Sbjct: 306 VSVFEEMKDAGCEPD-----VITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYS 360

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNS 567
            L+  F   G      K F  + + G++P+ + +  LI A CK             +  +
Sbjct: 361 TLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQA 420

Query: 568 NLMPDAATKELLKKSLWKEGRRKEA 592
            +  +  T   L   L ++GR +EA
Sbjct: 421 GVNLNIVTYTALLDGLCEDGRMREA 445



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 53/109 (48%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           Y  ++  Y K GK  EAV   +++ D G      TY V+I+ L  +G +  A+  F  + 
Sbjct: 534 YTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMT 593

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
              ++     Y  L++G    +  +EAK+L NEM D G  P + +  +L
Sbjct: 594 RNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSL 642



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 96/502 (19%), Positives = 194/502 (38%), Gaps = 24/502 (4%)

Query: 74  HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKF 133
           H L  +     ALS  + +      S +  T + +   LA+       ++L  ++ +   
Sbjct: 224 HRLSKSSKGGLALSFFKDMVV-AGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGL 282

Query: 134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE 193
               V + +L+  Y   G L   +S + E +         +YN +++ + K  +  +A E
Sbjct: 283 RPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFE 342

Query: 194 TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
               +   G  PN  TY+ +I+     G L  A + F  +  + ++     Y  L++   
Sbjct: 343 YLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANC 402

Query: 254 GVERFDEAKSLLNEMRDDGKFPGRAMRVA-LERMQEMGFIQGANEFLREMLPDKRIKNVR 312
            +   +EA  L +EM+  G         A L+ + E G ++ A E    +L      N +
Sbjct: 403 KIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQ 462

Query: 313 YY-------------EDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPE 359
            Y             E   D  E+ N  N     + YG ++        + +++      
Sbjct: 463 IYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREM 522

Query: 360 VVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQP-GYTHDVYALEKMLTILAR 418
           +   L    +++TT     +  +FK  +T          Q  G    V     ++  L +
Sbjct: 523 MDCGLTANSYIYTTL----IDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCK 578

Query: 419 HGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFK 478
            G V+   R    +  +G++        +ID    +   + A   F++   L   IS  K
Sbjct: 579 IGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNE--MLDKGISPDK 636

Query: 479 LMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF 538
             L+Y+SL+    K     +A+++   M+  G+  D+  ++ L++ F+  G  ++ + L 
Sbjct: 637 --LVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLL 694

Query: 539 SMVRQNGVEPDAYMFKVLIQAY 560
             + + G+ PD  +   L++ Y
Sbjct: 695 DEMLRKGIIPDQVLCICLLRKY 716



 Score = 45.8 bits (107), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 81/416 (19%), Positives = 149/416 (35%), Gaps = 34/416 (8%)

Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
           GDLE   S + E + +       +YN ++  Y K G    AV  F ++ D G  P+  TY
Sbjct: 265 GDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITY 324

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
             +I       ++  A E    +    ++     Y  L++ F       EA     +M  
Sbjct: 325 NSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDM-- 382

Query: 271 DGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNS 330
                   +RV L+           NEF    L D   K      D ++  + E++   +
Sbjct: 383 --------IRVGLQ----------PNEFTYTSLIDANCK----IGDLNEAFKLESEMQQA 420

Query: 331 GVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHF---KSPE 387
           GV +   V     LD       + E + E+   L  A +    ++   +   +   K  E
Sbjct: 421 GVNLNI-VTYTALLDGLCEDGRMRE-AEELFGALLKAGWTLNQQIYTSLFHGYIKAKMME 478

Query: 388 TAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLI 447
            A         +     D+      +  L R   +E    +I ++   G+         +
Sbjct: 479 KAMDIL-EEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTL 537

Query: 448 IDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMI 507
           ID Y    K   A+    + + L   I+    ++ Y  L+  L K      A+   + M 
Sbjct: 538 IDAYFKVGKTTEAVNLLQEMQDLGIKIT----VVTYGVLIDGLCKIGLVQQAVRYFDHMT 593

Query: 508 FSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY 563
            +G+ P++  ++ L+         +  + LF+ +   G+ PD  ++  LI    K+
Sbjct: 594 RNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKH 649



 Score = 43.5 bits (101), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 43/79 (54%)

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
           + LL  L+K  +   A++  ++M+ +G+ P V T++ ++   A +GD +  + LF  ++ 
Sbjct: 220 NELLHRLSKSSKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKA 279

Query: 544 NGVEPDAYMFKVLIQAYCK 562
            G+ PD   +  LI  Y K
Sbjct: 280 KGLRPDIVTYNSLIDGYGK 298



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 3/115 (2%)

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           N++R   K+    S N ++   +K+ K   A+  F+ ++  G  P+  TY ++I  L   
Sbjct: 208 NKFRVLPKV---RSCNELLHRLSKSSKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLARE 264

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           G L++A  +F  +    ++     Y  L++G+  V     A S+  EM+D G  P
Sbjct: 265 GDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEP 319



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 13/150 (8%)

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
           +Y++L+    K  +  +A+N+L+EM   GI   V T+  L+      G  +   + F  +
Sbjct: 533 IYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHM 592

Query: 542 RQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRR 589
            +NG++P+  ++  LI   CK             + +  + PD      L     K G  
Sbjct: 593 TRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNP 652

Query: 590 KEAAAVEERCEKIN-DVPSLALRGHIWAVS 618
            EA ++  R  +I  ++   A    IW  S
Sbjct: 653 GEALSLRNRMVEIGMELDLCAYTSLIWGFS 682



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 1/107 (0%)

Query: 190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV 249
           EA   F +++D+G  P+   YT +I+  +  G    AL + + +  + ++     Y  L+
Sbjct: 619 EAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLI 678

Query: 250 EGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER-MQEMGFIQGA 295
            GF    +   AKSLL+EM   G  P + + + L R   E+G I  A
Sbjct: 679 WGFSRYGQVQLAKSLLDEMLRKGIIPDQVLCICLLRKYYELGDINEA 725


>gi|296089012|emb|CBI38715.3| unnamed protein product [Vitis vinifera]
          Length = 429

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 97/231 (41%), Gaps = 24/231 (10%)

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           V K++     P  A   F   + QP + H   +   ++  L       L+  L+ +L+S+
Sbjct: 62  VQKLIASQSDPLLAKEIFDLASLQPNFKHSYSSFHILILKLGWARQFSLMQDLLMRLKSE 121

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCK 494
              +  S    II+ YG +   D ALK FH        P+ K       + LL+ L    
Sbjct: 122 QYSINPSLFSDIIEIYGEANLPDQALKTFHSMLQFHSKPLPKH-----LNRLLQLLVS-H 175

Query: 495 RDF--DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYM 552
           R++   A ++ +     G+ PD ++++ LM  F   GD  I   LF+ + +  V PD   
Sbjct: 176 RNYIRPAFDLFKSAHRYGVSPDTKSYNILMSAFCFNGDLSIAYTLFNQMFKRDVAPDVES 235

Query: 553 FKVLIQAYCKY------------LSNSNLMPDA---ATKELLKKSLWKEGR 588
           +++L+Q  C+             + N   +PDA    T  L  + L+ E +
Sbjct: 236 YRILMQGLCRKSQVNRAVDLLEDMLNKGYVPDALSYTTFGLCDQGLYDEAK 286



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 3/176 (1%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           LM  +  +GDL +  + +N+  +R      ESY I+M    +  +   AV+    ++++G
Sbjct: 204 LMSAFCFNGDLSIAYTLFNQMFKRDVAPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKG 263

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +P++ +YT     L + G  D A      +           +  L+ GF  V + +EA 
Sbjct: 264 YVPDALSYTTF--GLCDQGLYDEAKNYVEEMLSKGFSLHFSVFHALINGFCNVGKLEEAC 321

Query: 263 SLLNEMRDDGKFPGRAMRVA-LERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDG 317
            +L EM   G+ P     VA + R+ E+  +        E L  +   N R  E G
Sbjct: 322 EVLREMLRHGEAPHTETWVAIIPRICEVDKLVRMENIFDEALKLEITPNTRLVEAG 377



 Score = 45.4 bits (106), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 99/246 (40%), Gaps = 39/246 (15%)

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKF-LNVSV--------------- 138
            PNF H+ S+ H L   L  +++   ++ L+  + S ++ +N S+               
Sbjct: 85  QPNFKHSYSSFHILILKLGWARQFSLMQDLLMRLKSEQYSINPSLFSDIIEIYGEANLPD 144

Query: 139 ----NFMNLMQWYSTSGD------LELVLSTWNEYRQRAKLLS----------TESYNIV 178
                F +++Q++S          L+L++S  N  R    L            T+SYNI+
Sbjct: 145 QALKTFHSMLQFHSKPLPKHLNRLLQLLVSHRNYIRPAFDLFKSAHRYGVSPDTKSYNIL 204

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI 238
           MS +   G    A   F Q+      P+  +Y ++++ L    +++ A+++   +     
Sbjct: 205 MSAFCFNGDLSIAYTLFNQMFKRDVAPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGY 264

Query: 239 KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQGANE 297
              +  Y     G      +DEAK+ + EM   G           +     +G ++ A E
Sbjct: 265 VPDALSYTTF--GLCDQGLYDEAKNYVEEMLSKGFSLHFSVFHALINGFCNVGKLEEACE 322

Query: 298 FLREML 303
            LREML
Sbjct: 323 VLREML 328


>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 65/144 (45%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           + +L+  Y   G L L    ++E  +R    +  +YNI++    + G+  +A     ++ 
Sbjct: 215 YNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMK 274

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
                P +RT+ ++++ L N G+LD AL     L L+ +  T   Y IL+ GF  V    
Sbjct: 275 RAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSS 334

Query: 260 EAKSLLNEMRDDGKFPGRAMRVAL 283
               L+ EM D G  P +     L
Sbjct: 335 VVSELVREMEDRGISPSKVTYTIL 358



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 1/139 (0%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           S +F N +   + SG+L+     + EY  R +     S+ I +  + + G   +  E   
Sbjct: 73  SFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQF-DVYSFGITIKAFCENGNVSKGFELLA 131

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           Q+   G  PN   YT++IE     G +D A  +FS +  + +      Y I++ GF    
Sbjct: 132 QMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKG 191

Query: 257 RFDEAKSLLNEMRDDGKFP 275
              +   L  +M+  G  P
Sbjct: 192 YKKDGFELYQKMKLVGVLP 210



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 79/184 (42%), Gaps = 17/184 (9%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLL----STESYNIVMSVYAKTGKNFEAVETF 195
           F  LM     +G L+  LS    Y ++ KL+    +  +YNI++S ++K G +    E  
Sbjct: 285 FNMLMDGLCNTGQLDKALS----YLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELV 340

Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
           R++ D G  P+  TYT+++   V    ++ A E+F  +  + +      Y +L+ G    
Sbjct: 341 REMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIK 400

Query: 256 ERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGAN-----EFLREMLPDKRIKN 310
               EA  L   M +    P   +   +      G+ +  N     +FL EM+ +    N
Sbjct: 401 GNMVEASKLYKSMVEMHLQPNDVIYNTMIN----GYCKECNSYKALKFLEEMVKNGVTPN 456

Query: 311 VRYY 314
           V  Y
Sbjct: 457 VASY 460



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 53/275 (19%), Positives = 109/275 (39%), Gaps = 24/275 (8%)

Query: 349 LANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYA 408
           L  +LD +   V+   + + F +   L   +L    + +  W FF    Y      DVY+
Sbjct: 54  LEQSLDSFKLMVLKGHSPSSFSFNNAL--DLLAKSGNLDRTWGFF--TEYLGRTQFDVYS 109

Query: 409 LEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH--D 466
               +     +G+V     L+A++ + G+        ++I+    +   D A   F   D
Sbjct: 110 FGITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMD 169

Query: 467 DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
           D  L           +Y+ ++    K     D   + ++M   G++P++ T++ L+  + 
Sbjct: 170 DLGLAAN------QYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYC 223

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAA 574
             G   +  K+F  + + GV  +A  + +LI   C+             +  +++ P   
Sbjct: 224 RDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTR 283

Query: 575 TKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA 609
           T  +L   L   G+  +A +  E+ + I   P+L 
Sbjct: 284 TFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLV 318



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 5/146 (3%)

Query: 162 EYRQRAKLLST----ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217
           E  Q+ KL+       +YN +++ Y + GK   A + F ++   G   N+ TY ++I  L
Sbjct: 198 ELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGL 257

Query: 218 VNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR 277
              G++  A  +   +    I  T++ + +L++G     + D+A S L +++  G  P  
Sbjct: 258 CRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTL 317

Query: 278 AM-RVALERMQEMGFIQGANEFLREM 302
               + +    ++G     +E +REM
Sbjct: 318 VTYNILISGFSKVGNSSVVSELVREM 343



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 74/166 (44%), Gaps = 1/166 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+  +S  G+  +V     E   R    S  +Y I+M+ + ++    +A E F  
Sbjct: 318 VTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHL 377

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G +P+  TY V+I  L   G +  A +++ ++  M ++     Y  ++ G+     
Sbjct: 378 MKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECN 437

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVA-LERMQEMGFIQGANEFLREM 302
             +A   L EM  +G  P  A  ++ ++ + + G    A   L+EM
Sbjct: 438 SYKALKFLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEM 483



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           Y I+++ + K G   +  E ++++   G +PN  TY  +I      GKL  A +VF  + 
Sbjct: 180 YTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEIS 239

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
              +   +  Y IL+ G     +  +A+ LL  M+
Sbjct: 240 KRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMK 274



 Score = 41.2 bits (95), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 63/146 (43%), Gaps = 4/146 (2%)

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
           L R G V   + L+ +++   +     T  +++D    + + D AL      +     I 
Sbjct: 257 LCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKL----IG 312

Query: 476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ 535
               ++ Y+ L+   +K         ++ EM   GI P   T++ LM  F    D +   
Sbjct: 313 LCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAY 372

Query: 536 KLFSMVRQNGVEPDAYMFKVLIQAYC 561
           ++F ++++ G+ PD + + VLI   C
Sbjct: 373 EMFHLMKRIGLVPDQHTYGVLIHGLC 398



 Score = 39.3 bits (90), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 31/151 (20%), Positives = 62/151 (41%), Gaps = 24/151 (15%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+ T  +      A  +   M   G+VPD  T+  L++   ++G+     KL+  + 
Sbjct: 355 YTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMV 414

Query: 543 QNGVEPDAYMFKVLIQAYCKYLSN------------SNLMPDAATKELLKKSLWKEGRRK 590
           +  ++P+  ++  +I  YCK  ++            + + P+ A+     + L K+G+  
Sbjct: 415 EMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGVTPNVASYISTIQILCKDGKSI 474

Query: 591 EAAAV------------EERCEKINDVPSLA 609
           EA  +            E  C K+    S A
Sbjct: 475 EAKRLLKEMTEAGLKPPESLCSKVGQAKSCA 505


>gi|225447826|ref|XP_002268129.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Vitis vinifera]
          Length = 679

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 83/188 (44%), Gaps = 2/188 (1%)

Query: 85  ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
           A+ + E +K   NF     T++ L   L +++   E + L   +      N+    + L 
Sbjct: 322 AVGVFELMKRY-NFDAGVDTINCLLDNLGRAKLGKEAQALFEKLEDRFTPNLRTYTVLLN 380

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204
            W      +E    TWNE   +       +++ ++    K  K  +A++ F  +  +G  
Sbjct: 381 GWCRIKNLVE-AGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPS 439

Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL 264
           PN RTYT++I  L    K+  A+E F  +     +  +  Y  L+ GF   ++ D+  +L
Sbjct: 440 PNVRTYTILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYAL 499

Query: 265 LNEMRDDG 272
           L EM++ G
Sbjct: 500 LKEMKEKG 507



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 135/350 (38%), Gaps = 78/350 (22%)

Query: 312 RYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT---LDEW---SPEVVSLLA 365
           R  +  +D D + + D N G      V +    DP+ ++     +DE       + ++L 
Sbjct: 169 RVSQGETDSDPETDGDENVGGDFDE-VNVNSGADPEEVSRVCRVIDELFALDRNMEAVLD 227

Query: 366 DAKFVWTTRLVCKVLRHFK-SPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVEL 424
           +     +  LV  VL  FK + + A+ FFCW   + G+TH+      M+++L R    E 
Sbjct: 228 ECNVDLSHALVVGVLERFKHARKPAFRFFCWAGQKAGFTHNSRTYNAMMSVLGRTRQFES 287

Query: 425 VDRLIAKLRSDGM------------------------------RLPF----STIRLIIDF 450
           +  ++ ++   G+                              R  F     TI  ++D 
Sbjct: 288 MMGMLGEMGEKGLLTMETFSIAIKAFAAAKERKKAVGVFELMKRYNFDAGVDTINCLLDN 347

Query: 451 YG---ISKKADAALKAFHD-------------------------DRTLCGPISK-FKLML 481
            G   + K+A A  +   D                          RT    I K FK  +
Sbjct: 348 LGRAKLGKEAQALFEKLEDRFTPNLRTYTVLLNGWCRIKNLVEAGRTWNEMIDKGFKPDI 407

Query: 482 L-YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
           + + ++L  L KCK+  DAI + E M   G  P+V+T++ L+     Q   +   + F  
Sbjct: 408 IAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYTILIRDLCKQMKMQEAVEYFDE 467

Query: 541 VRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPD--AATKELLKKSLWKEGR 588
           +  +G +PDA ++  LI  +     N   M    A  KE+ +K    +GR
Sbjct: 468 MVDSGCQPDAAVYTCLITGF----GNQKKMDKVYALLKEMKEKGCPADGR 513



 Score = 42.7 bits (99), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 5/94 (5%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+R L K  +  +A+   +EM+ SG  PD   ++ L+  F  Q     V  L   ++
Sbjct: 445 YTILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMK 504

Query: 543 QNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATK 576
           + G   D   +  LI+     L  +  MPD A +
Sbjct: 505 EKGCPADGRTYNALIK-----LMTNRQMPDDAVR 533



 Score = 39.7 bits (91), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 44/99 (44%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y I++    K  K  EAVE F +++D G  P++  YT +I    N  K+D    +   +
Sbjct: 444 TYTILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEM 503

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
                    + Y  L++     +  D+A  +  +M  +G
Sbjct: 504 KEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNG 542



 Score = 39.3 bits (90), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 38/214 (17%), Positives = 78/214 (36%), Gaps = 6/214 (2%)

Query: 64  DRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRN 118
           D+   P I+ H      L        A+ + E +K+    S N  T   L   L K  + 
Sbjct: 400 DKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAK-GPSPNVRTYTILIRDLCKQMKM 458

Query: 119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV 178
            E      ++  S     +  +  L+  +     ++ V +   E +++       +YN +
Sbjct: 459 QEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMKEKGCPADGRTYNAL 518

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI 238
           + +        +AV  ++++I  G      TY +M++        +    V+  +     
Sbjct: 519 IKLMTNRQMPDDAVRIYKKMIQNGIQSTLHTYNMMMKSYFYTRNYEMGCAVWEEMGRKGC 578

Query: 239 KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
                 Y++ + G +   R +EA   L EM + G
Sbjct: 579 CPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEKG 612


>gi|255578920|ref|XP_002530313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530169|gb|EEF32080.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 328

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 4/166 (2%)

Query: 111 VLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLL 170
           V+ +    + L+ +   + S   LN +V   + +   S  G     L  +++ + +  + 
Sbjct: 139 VIEEPDDPNNLQLIFHKMRSEGLLNSAVKMFDAL---SKDGLTHEALELFSQIKNKGHMP 195

Query: 171 STESYNIVMSVYAKTG-KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
              +Y  V+  YA  G ++ EA++ F +++  G  PN+ TYTV+I+ L   GKL  A + 
Sbjct: 196 DVVAYTAVIEAYANAGGQSKEALKAFMRMLAAGVAPNAYTYTVLIKGLAGDGKLADANKY 255

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              +    ++  +  Y  + E +   ++ DEAK LL +M+  G  P
Sbjct: 256 VLEMMGKGMRPNAGTYSTVFEAYAKAQKVDEAKLLLQQMKGKGFVP 301


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 1/178 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V++  L+  +S  G +++ LS      +     + ESYN V++  +K  +  EA +   +
Sbjct: 514 VSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDK 573

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           ++++G +PN  TYT +I+ L   G+   A ++F  +   +       Y  L+ G     +
Sbjct: 574 MVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGK 633

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
            DEA+ LL EM   G  P      +L +    +G I  A   LR M+      N R Y
Sbjct: 634 ADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTY 691



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 106/244 (43%), Gaps = 42/244 (17%)

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           V +++   K  E+   FF W++ +P Y H++     ML  L R       DR+ A     
Sbjct: 78  VAEIVAVHKDTESVIQFFYWISKRPFYKHNMNCFISMLNRLVR-------DRVFA----- 125

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS--SLLRTLTKC 493
               P   IR+++     +++    +  F ++ +  G    F    LYS  +LL  L K 
Sbjct: 126 ----PADHIRILMIKACRNEEEIRRVADFLNEISGMG----FGFS-LYSCNTLLIQLAKF 176

Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
           +    A N+ ++M+ SGI P + TF+ L+   + +G  +  + + S + Q  + PD + +
Sbjct: 177 EMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTY 236

Query: 554 KVLIQAYCKYLSNSNL---------------MPDAATKELLKKSLWKEGRRKEAA-AVEE 597
             LI  +C+   N NL                P++ T   L   L  EGR  EA   +EE
Sbjct: 237 TSLILGHCR---NRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEE 293

Query: 598 RCEK 601
             EK
Sbjct: 294 MIEK 297



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 79/174 (45%), Gaps = 7/174 (4%)

Query: 82  ADSALSI---MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV 138
            D ALS+   ME +  NPN      + +A+   L+K  R  E + +   +     L   +
Sbjct: 529 VDIALSLLKRMEEMGCNPNVE----SYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVI 584

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
            +  L+     +G  +     +++  +R  L +  +Y+ ++    + GK  EA    +++
Sbjct: 585 TYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEM 644

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
             +G  P+  T+T +I+  V LG++D A  +   +  M  K   + Y +L++G 
Sbjct: 645 ERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTYSVLLKGL 698



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/220 (20%), Positives = 99/220 (45%), Gaps = 16/220 (7%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   +V     +++ L+R G +E+   L  K+  +G+     T   +I+   +  +   A
Sbjct: 333 GCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTA 392

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           LK FH      G ++  +    Y+ +++ L        A+ + E+M+  G +P V T++ 
Sbjct: 393 LKIFHWMEGH-GSLANTQT---YNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNT 448

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSN 568
           L+  +  +G+     +L  ++++NG EPD + +  L+  + K+            +    
Sbjct: 449 LINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECG 508

Query: 569 LMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
           L P+  +   L     K+G+   A ++ +R E++   P++
Sbjct: 509 LNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNV 548



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 68/136 (50%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           +  L+   S  G LE+ +  +++  +   + +T +YN +++     G+   A++ F  + 
Sbjct: 341 YTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWME 400

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
             G++ N++TY  +I+ L   G ++ A+ +F  +  M    T   Y  L+ G++     +
Sbjct: 401 GHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVN 460

Query: 260 EAKSLLNEMRDDGKFP 275
            A  LL+ M+++G  P
Sbjct: 461 NAARLLDLMKENGCEP 476



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 89/511 (17%), Positives = 199/511 (38%), Gaps = 37/511 (7%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T + L  +L+K  +  E + ++  I           + +L+  +  + +L+L    ++  
Sbjct: 200 TFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRM 259

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
            +     ++ +Y+ +++     G+  EA++   ++I++G  P   TYT+ I  L  +   
Sbjct: 260 VKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHE 319

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
           + A+E+ + +     +   + Y  L+ G   + + + A  L ++M  +G  P      AL
Sbjct: 320 EEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNAL 379

Query: 284 -ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKP 342
              +   G    A +    M     + N + Y +         D   + V     +++ P
Sbjct: 380 INELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGP 439

Query: 343 WLDPKALANTLDEWSPEVVSLLADAKFV------------WTTRLVCKVLRHFKSPETAW 390
            L      NTL        ++   A+ +            WT   +      +   E+A 
Sbjct: 440 -LPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESAS 498

Query: 391 HFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF 450
            +F  +  + G   +  +   ++   ++ G V++   L+ ++   G      +   +I+ 
Sbjct: 499 FYFQEMV-ECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVIN- 556

Query: 451 YGISKKADAALKAFHDDRTLCGPISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMI 507
            G+SK+       F +   +C  + +  L+   + Y++L+  L +  R   A  +  +M 
Sbjct: 557 -GLSKE-----NRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDME 610

Query: 508 FSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------ 561
               +P++ T+S L+Y    +G     + L   + + G+ PD   F  LI  +       
Sbjct: 611 KRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRID 670

Query: 562 ------KYLSNSNLMPDAATKELLKKSLWKE 586
                 + + +    P+  T  +L K L KE
Sbjct: 671 HAFLLLRRMVDMGCKPNYRTYSVLLKGLQKE 701



 Score = 40.0 bits (92), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 86/211 (40%), Gaps = 24/211 (11%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G    +     ++ IL++ G V   + +++++    +     T   +I  +  ++  D A
Sbjct: 193 GIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLA 252

Query: 461 LKAFHDDRTL---CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
              F  DR +   C P S     + YS+L+  L    R  +A+++LEEMI  GI P V T
Sbjct: 253 FGVF--DRMVKEGCDPNS-----VTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYT 305

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA-------------YCKYL 564
           ++  +        E+   +L + +++ G  P+   +  LI               Y K L
Sbjct: 306 YTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKML 365

Query: 565 SNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
               L+P+  T   L   L   GR   A  +
Sbjct: 366 K-EGLVPNTVTYNALINELCVGGRFSTALKI 395


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 80/170 (47%)

Query: 106 HALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQ 165
           +++A+ L K  R  E K L+  +        +++F  L+  Y   G+       + E  +
Sbjct: 439 NSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEE 498

Query: 166 RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
           +  + +  +YN+++  Y+K G   EA +   ++ + G IP+  T T +I      GK+D 
Sbjct: 499 KGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDM 558

Query: 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           AL++F  +P   +      Y  ++ G     R +EA  L +EM++ G  P
Sbjct: 559 ALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTP 608



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 20/174 (11%)

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALK--AFHDDRTLCGP 473
           + + G +E    L+ +++  G+ L       +ID Y  S   D AL+     + + L   
Sbjct: 375 VCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESD 434

Query: 474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
           +        Y+S+   L K  R  +A  +L  M+  G+ P+  +F+ L+  +  +G+   
Sbjct: 435 V------FAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVE 488

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAAT 575
            +++F  + + G  P+   + VLI  Y K             L N  L+PD  T
Sbjct: 489 AKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYT 542



 Score = 45.4 bits (106), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 60/135 (44%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+  +S  G +E     + E R++        Y  ++S   ++G    A+  F +
Sbjct: 296 VTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDE 355

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + D+G IP++ TY  +I  +   G++++A  + + +    I      +  L++G+     
Sbjct: 356 MTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGM 415

Query: 258 FDEAKSLLNEMRDDG 272
            DEA  L   M   G
Sbjct: 416 VDEALRLQVVMEKKG 430



 Score = 43.5 bits (101), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 14/162 (8%)

Query: 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA----- 460
           VY+L  +L  L + G VE+  +L+ ++ + G++    T    I+  G  K+ D       
Sbjct: 225 VYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIE--GYFKRLDLGGVAEI 282

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           L     +   C  ++       Y+ L+   +   +  +A  + EEM   GI  DV  ++ 
Sbjct: 283 LTLMEKEGVACNVVT-------YTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTS 335

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           ++      G+ K    LF  +   G+ P A+ +  LI   CK
Sbjct: 336 IISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCK 377



 Score = 40.0 bits (92), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 8/103 (7%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDE----GAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           S  IV+    K G     VE  R+++DE    G   N  TY   IE       L    E+
Sbjct: 227 SLTIVLDGLCKRGD----VEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEI 282

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
            + +    +      Y +L+ GF  + + +EA+ L  EMR+ G
Sbjct: 283 LTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKG 325



 Score = 40.0 bits (92), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 18/81 (22%), Positives = 40/81 (49%)

Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
           +Y+S++    +      A+ + +EM   G++P   T+  L++     G  +  Q L + +
Sbjct: 332 VYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEM 391

Query: 542 RQNGVEPDAYMFKVLIQAYCK 562
           +  G++ +  +F  LI  YC+
Sbjct: 392 QGKGIDLNPVIFNTLIDGYCE 412


>gi|449443903|ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
 gi|449475521|ref|XP_004154479.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
          Length = 660

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 94/226 (41%), Gaps = 6/226 (2%)

Query: 83  DSALSIMEALKSNPN-----FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVS 137
           D AL + E +K          + +    + L   L K  R  E   L+G + S +    +
Sbjct: 204 DDALEVFEKMKGEKEETKVFVAPDTIMYNTLIDGLCKVGRQEEALCLMGKMRSDQCAPTT 263

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
             F  L+  Y  SG++E+    +NE        +  + N ++    K  +   AVE FR 
Sbjct: 264 ATFNCLINGYCRSGEIEVAHKLFNEMENAQIEPNVITLNTLVDGMCKHNRISTAVEFFRV 323

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +  +G   N+ TYTV I    N+  ++ A+E    +        +  Y  L+ G     R
Sbjct: 324 MQQKGLKGNNVTYTVFINAFCNVNNMNKAMEFLDEMSKDGCFPDAVVYYTLICGLAQAGR 383

Query: 258 FDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
            D+A S+++++++ G    R    V +    +   +  A E+L EM
Sbjct: 384 LDDASSVVSKLKEAGFCLDRVCYNVLISEFCKKNKLDRAQEWLNEM 429



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 87/196 (44%), Gaps = 10/196 (5%)

Query: 373 TRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKL 432
           T+L+ K+ R   +   AW+    +    G   D      +LT L +      ++ L+ K+
Sbjct: 121 TQLISKLCRS-GNTNLAWNILDNLMMLNGL-KDAAPCNALLTGLGKAREFGKMNLLMRKM 178

Query: 433 RSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM-----LLYSSLL 487
           +   ++    T  ++I+     ++ D AL+ F   +   G   + K+      ++Y++L+
Sbjct: 179 KDMNIQPTVITFGILINHLCKFRRIDDALEVFEKMK---GEKEETKVFVAPDTIMYNTLI 235

Query: 488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE 547
             L K  R  +A+ ++ +M      P   TF+ L+  +   G+ ++  KLF+ +    +E
Sbjct: 236 DGLCKVGRQEEALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIEVAHKLFNEMENAQIE 295

Query: 548 PDAYMFKVLIQAYCKY 563
           P+      L+   CK+
Sbjct: 296 PNVITLNTLVDGMCKH 311



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 80/393 (20%), Positives = 153/393 (38%), Gaps = 43/393 (10%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YN ++    K G+  EA+    ++  +   P + T+  +I      G+++ A ++F+ + 
Sbjct: 231 YNTLIDGLCKVGRQEEALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIEVAHKLFNEME 290

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQ 293
             +I+        LV+G     R   A      M+  G K       V +     +  + 
Sbjct: 291 NAQIEPNVITLNTLVDGMCKHNRISTAVEFFRVMQQKGLKGNNVTYTVFINAFCNVNNMN 350

Query: 294 GANEFLREMLPDKRIKN-VRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
            A EFL EM  D    + V YY                   +  G+         A A  
Sbjct: 351 KAMEFLDEMSKDGCFPDAVVYYT------------------LICGL---------AQAGR 383

Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQ--PGYTHDVYALE 410
           LD+ S  VVS L +A F         ++  F           W+      G   D     
Sbjct: 384 LDDAS-SVVSKLKEAGFCLDRVCYNVLISEFCKKNKLDRAQEWLNEMELAGVKPDSVTYN 442

Query: 411 KMLTILARHGHVELVDRLIAKL-RSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRT 469
            +++  ++ G+ +L  + + K+   +G+     T   +I  Y ++   D A+K F +   
Sbjct: 443 TLISYFSKIGNFKLAHKFMKKMTEEEGLSPTVFTYGALIHAYCLNNNIDEAIKIFKEMNN 502

Query: 470 LCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
           +   +    +  +Y+ L+ +L K  +   A+++L++M F G++P+  T++ +   F    
Sbjct: 503 VASKVPPNTV--IYNILIDSLCKQTQVNFALSLLDDMKFRGVMPNTTTYNSI---FKALR 557

Query: 530 DEKIVQKLFS----MVRQNGVEPDAYMFKVLIQ 558
           D+  + K F     MV Q    PD    ++L +
Sbjct: 558 DKNWLDKAFKLMDRMVEQ-ACNPDYITMEILTE 589


>gi|15233137|ref|NP_191711.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183498|sp|Q9M316.1|PP292_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g61520, mitochondrial; Flags: Precursor
 gi|6850843|emb|CAB71082.1| putative protein [Arabidopsis thaliana]
 gi|332646696|gb|AEE80217.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 766

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 95/200 (47%), Gaps = 4/200 (2%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + HA  S  N + A+   E +      S +    +AL + L + +R+H+   ++  +   
Sbjct: 482 LIHACCSVSNVEKAMYWYEKMLE-AGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEG 540

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
            F    + +  L+  +    + E V     +  +  K   + +YN ++S + K  K+FE+
Sbjct: 541 GFSLDLLAYNMLIGLFCDKNNTEKVYEMLTDMEKEGKKPDSITYNTLISFFGKH-KDFES 599

Query: 192 VE-TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM-RIKRTSKQYLILV 249
           VE    Q+ ++G  P   TY  +I+   ++G+LD AL++F  + L  ++   +  Y IL+
Sbjct: 600 VERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILI 659

Query: 250 EGFVGVERFDEAKSLLNEMR 269
             F  +  F +A SL  EM+
Sbjct: 660 NAFSKLGNFGQALSLKEEMK 679



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 75/161 (46%), Gaps = 5/161 (3%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           + G   D      +++   +H   E V+R++ ++R DG+    +T   +ID Y    + D
Sbjct: 574 KEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELD 633

Query: 459 AALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
            ALK F D     G  SK     ++Y+ L+   +K      A+++ EEM    + P+V+T
Sbjct: 634 EALKLFKD----MGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVET 689

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           ++ L      +   + + KL   + +   EP+    ++L++
Sbjct: 690 YNALFKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILME 730



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 50/93 (53%), Gaps = 5/93 (5%)

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
           C P +K     +Y +L+  L + +RD DAI V+E++   G   D+  ++ L+  F  + +
Sbjct: 507 CSPDAK-----IYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNN 561

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY 563
            + V ++ + + + G +PD+  +  LI  + K+
Sbjct: 562 TEKVYEMLTDMEKEGKKPDSITYNTLISFFGKH 594


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 82/178 (46%), Gaps = 5/178 (2%)

Query: 98  FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVL 157
           F++N S +HAL  +    +  H + TL+ ++ +SK +   V F  ++      G + +  
Sbjct: 326 FTYN-SLIHALCNL---CEWKH-VTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAH 380

Query: 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217
              +   +R       +Y  +M  +    +  EAV+ F  ++ +G +PN R+Y ++I   
Sbjct: 381 DVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGY 440

Query: 218 VNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             + ++D A+ +   + L  +   +  Y  L+ G   V R   A +L +EM   G+ P
Sbjct: 441 CQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIP 498



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 16/144 (11%)

Query: 480 MLLYSSLLRTLTKCKRDFDAI--NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL 537
           ++++S+++  L  CK    AI  +V++ MI  G+ PDV T++ LM    L+ +     K+
Sbjct: 360 VVVFSTVVDAL--CKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKV 417

Query: 538 FSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWK 585
           F  +   G  P+   + +LI  YC+             +S   L+ D  T   L   L  
Sbjct: 418 FDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCH 477

Query: 586 EGRRKEAAAVEERCEKINDVPSLA 609
            GR + A A+         +P L 
Sbjct: 478 VGRLQHAIALFHEMVASGQIPDLV 501



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/253 (20%), Positives = 107/253 (42%), Gaps = 19/253 (7%)

Query: 65  RLLDPFIVT-------HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR 117
           R ++P +VT       H LRS    D A+ + + +  +     N  + + L     + QR
Sbjct: 389 RGVEPDVVTYTALMDGHCLRS--EMDEAVKVFDTM-VHKGCVPNVRSYNILINGYCQIQR 445

Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI 177
             +   L+  +S    +  +V +  L+      G L+  ++ ++E     ++    +Y I
Sbjct: 446 MDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRI 505

Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
           ++    K     EA+   + +       +   Y + I+ +   G+L++A ++FS L    
Sbjct: 506 LLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKG 565

Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ---- 293
           ++   + Y I++ G       DEA  L  +M ++G      +   + R    GF++    
Sbjct: 566 LQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENGCSRDGCIYNTIIR----GFLRSNET 621

Query: 294 -GANEFLREMLPD 305
            GA + L+EML +
Sbjct: 622 FGATQLLQEMLAE 634



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 77/414 (18%), Positives = 159/414 (38%), Gaps = 36/414 (8%)

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE-GAIPNSRTYT 211
           L+  LS++N         ST  +  +++  AK  K++  V +    +D  G  P+  T  
Sbjct: 131 LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKM-KHYSTVLSLSTQMDSFGIPPDVYTLN 189

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
           ++I    +L +L  A  V + L  +  +  +  +  L+ G     +  EA  L ++   +
Sbjct: 190 ILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGE 249

Query: 272 GKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNS 330
           G  P       L   + ++G    A   LR M+      NV                   
Sbjct: 250 GFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNV------------------- 290

Query: 331 GVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPET 388
              IAY   +      + +    + +S  +   ++   F + + +  +C  L  +K   T
Sbjct: 291 ---IAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCN-LCEWKHVTT 346

Query: 389 AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII 448
             +        P    +V     ++  L + G + +   ++  +   G+     T   ++
Sbjct: 347 LLNEMVNSKIMP----NVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALM 402

Query: 449 DFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF 508
           D + +  + D A+K F D     G +   +    Y+ L+    + +R   A+ +LE+M  
Sbjct: 403 DGHCLRSEMDEAVKVF-DTMVHKGCVPNVRS---YNILINGYCQIQRMDKAMGLLEQMSL 458

Query: 509 SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            G++ D  T++ L++     G  +    LF  +  +G  PD   +++L+   CK
Sbjct: 459 QGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCK 512



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 44/98 (44%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YNI +    + G+   A + F  +  +G  P+ RTY +MI  L   G LD A ++F  + 
Sbjct: 538 YNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMD 597

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
                R    Y  ++ GF+       A  LL EM  +G
Sbjct: 598 ENGCSRDGCIYNTIIRGFLRSNETFGATQLLQEMLAEG 635


>gi|226509960|ref|NP_001150456.1| LOC100284086 [Zea mays]
 gi|195639404|gb|ACG39170.1| ATP binding protein [Zea mays]
          Length = 634

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 3/210 (1%)

Query: 67  LDPF-IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           +D F +   +  +A    +A+ + E ++ N  F     + + L   LAK     E + + 
Sbjct: 262 MDAFKVAIKSFAAAGEIKNAVGVFELMRKN-GFDDGVESFNCLLVALAKEGLGREARQVF 320

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
            D    ++     ++  LM  +  + +L      WNE  ++        +N ++    + 
Sbjct: 321 -DKMHGQYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRG 379

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
            +  EAV+ F  +  +G  PN  TYT++I      GK+D A+E F  +   + +     Y
Sbjct: 380 QRRPEAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATY 439

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             L+ G+   ++ D   ++L EM   G  P
Sbjct: 440 TCLLVGYGNAKQMDRVTAVLEEMTQKGCPP 469



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 6/103 (5%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+R   K  +   A+   EEM  +   PDV T++ L+  +        V  +   + 
Sbjct: 404 YTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMT 463

Query: 543 QNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAAT--KELLKKSL 583
           Q G  PDA  +  LI    K L+N N+  DAA   K+++KK L
Sbjct: 464 QKGCPPDARTYNALI----KLLTNRNMPDDAARIYKKMIKKGL 502



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 53/254 (20%), Positives = 93/254 (36%), Gaps = 56/254 (22%)

Query: 375 LVCKVLRHFK-SPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
           +V  VL  FK +   ++ FF W     G+TH      KML IL +    E +  +I ++ 
Sbjct: 196 VVLAVLHRFKHAHRPSYRFFRWATVSGGFTHTTITYCKMLHILGKTRQFESMVAMIQEMG 255

Query: 434 SDGMRLPFSTIRLIIDFYGISKKADAALKAFH-------DDRTLCGPISKFKLMLL---- 482
             G  L     ++ I  +  + +   A+  F        DD      +  F  +L+    
Sbjct: 256 KAGA-LSMDAFKVAIKSFAAAGEIKNAVGVFELMRKNGFDDG-----VESFNCLLVALAK 309

Query: 483 ------------------------YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
                                   Y++L+      +   +A  V  EM+  G+ PDV   
Sbjct: 310 EGLGREARQVFDKMHGQYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMDPDV-VV 368

Query: 519 SGLMYHFALQGDEKI-VQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LS 565
              M    L+G  +    K+F +++  G  P+ + + +LI+ +CK             + 
Sbjct: 369 HNTMIEGLLRGQRRPEAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKMDMAMECFEEMQ 428

Query: 566 NSNLMPDAATKELL 579
            +   PD AT   L
Sbjct: 429 EAKCQPDVATYTCL 442


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 92/455 (20%), Positives = 169/455 (37%), Gaps = 79/455 (17%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAI---PNSRTYTVMIEHLVNLGKLDSALEVF 230
           SYN ++       K+ EA+E    +  +G     PN  +Y  +I+     G++D A  +F
Sbjct: 164 SYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLF 223

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEM 289
             +    +      Y  L++G    +  D+A ++L  M D G  P  R   + +     +
Sbjct: 224 HEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSL 283

Query: 290 GFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKAL 349
           G ++ A   L++M                         + SG            L P  +
Sbjct: 284 GQLEEAVRLLKKM-------------------------SGSG------------LQPDVV 306

Query: 350 ANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPE-TAWHFFCWVAYQPGYTHDVY- 407
             +L       +   A+A+ V+ +     ++R  + P  T +H         G   DV  
Sbjct: 307 TYSLLIQYYCKIGRCAEARSVFDS-----MVRKGQKPNSTIYHILLHGYATKGALIDVRD 361

Query: 408 ---------------ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYG 452
                          A   ++   A+HG V+       ++R +G+R    +   +I    
Sbjct: 362 LLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILC 421

Query: 453 ISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV 512
            + + + A+  +H ++ +   +S    ++ ++SL+  L           +  EMI  GI 
Sbjct: 422 KTGRVEDAV--YHFNQMVSEGLSPN--IISFTSLIHGLCSIGEWKKVEELAFEMINRGIH 477

Query: 513 PDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC----------- 561
           PD    + +M +   +G     Q  F MV   GV+PD   +  LI  YC           
Sbjct: 478 PDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQ 537

Query: 562 -KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
              + +  L PD+ T   L    +K GR ++A A+
Sbjct: 538 LDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALAL 572



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 94/478 (19%), Positives = 187/478 (39%), Gaps = 60/478 (12%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  Y+T G L  V    +   +        ++NI++  YAK G   +A+  F ++   G
Sbjct: 346 LLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNG 405

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  +Y+ +I  L   G+++ A+  F+ +    +      +  L+ G   +  + + +
Sbjct: 406 LRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVE 465

Query: 263 SLLNEMRDDGKFPGRA-MRVALERMQEMGFIQGANEFLREML-----PDKRIKNV---RY 313
            L  EM + G  P    M   ++ + + G +  A +F   ++     PD    N     Y
Sbjct: 466 ELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGY 525

Query: 314 YEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTT 373
              G  D+  +  D      ++ G++   W     L         E    L    F    
Sbjct: 526 CFVGKMDESIKQLDR----MVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDV 581

Query: 374 RLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
           +                  FC +       H ++   ++  + AR  ++++VDR      
Sbjct: 582 K------------------FCAITSNI-MLHGLFQAGRI--VAARELYMKMVDR------ 614

Query: 434 SDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTK 492
             G +L   T   ++     +   D AL+ F D R+      +F+L +  +S ++  L K
Sbjct: 615 --GTQLRIETYNTVLGGLCENSCVDEALRMFEDLRS-----KEFELDVRTFSIVINALLK 667

Query: 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYM 552
             R  +A ++   M+  G VPDV T+S ++     +G  +    LF  + +NG   D++M
Sbjct: 668 VGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESDNLFLSMEKNGCAADSHM 727

Query: 553 FKVLIQ------------AYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
             ++++             Y   +   N   +A+T  LL   + ++  +KE   + E+
Sbjct: 728 LNIIVRRLLEKGDVRRAGTYLTKIDEKNFSLEASTAALLIPIVSEKKYQKEVKFLPEK 785



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 93/203 (45%), Gaps = 9/203 (4%)

Query: 77  RSAPNADSALSIMEALKSNPN-FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLN 135
           R+    D     M  L   P+ FS+N     AL   L   +++ E   L+  +++    N
Sbjct: 141 RTDDAMDMVFRRMPELGYTPDVFSYN-----ALIKGLCVEKKSQEALELLIHMTADGGYN 195

Query: 136 VS---VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV 192
            S   V++  ++  +   G+++     ++E   +       +YN ++    K     +AV
Sbjct: 196 CSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAV 255

Query: 193 ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
              + + D+G +P++RTY +MI    +LG+L+ A+ +   +    ++     Y +L++ +
Sbjct: 256 AILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYY 315

Query: 253 VGVERFDEAKSLLNEMRDDGKFP 275
             + R  EA+S+ + M   G+ P
Sbjct: 316 CKIGRCAEARSVFDSMVRKGQKP 338



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 7/165 (4%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG---MRLPFSTIRLIIDFYGISKKA 457
           GYT DV++   ++  L      +    L+  + +DG         +   +ID +    + 
Sbjct: 157 GYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEGEV 216

Query: 458 DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
           D A   FH+      P      ++ Y+SL+  L K +    A+ +L+ M   G++PD +T
Sbjct: 217 DKAYFLFHEMMGQGLPPD----VVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRT 272

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           ++ ++  +   G  +   +L   +  +G++PD   + +LIQ YCK
Sbjct: 273 YNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCK 317



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 82/195 (42%), Gaps = 22/195 (11%)

Query: 36  YLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHAL--------RSAPNADSALS 87
           Y    QL +++RL  + + S           L P +VT++L             A S   
Sbjct: 280 YCSLGQLEEAVRLLKKMSGSG----------LQPDVVTYSLLIQYYCKIGRCAEARSVFD 329

Query: 88  IMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWY 147
            M      PN +     LH  AT  A       L  +I D     F + + N   L+  Y
Sbjct: 330 SMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRD--GIPFEHRAFNI--LICAY 385

Query: 148 STSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNS 207
           +  G ++  ++ + E RQ        SY+ V+ +  KTG+  +AV  F Q++ EG  PN 
Sbjct: 386 AKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNI 445

Query: 208 RTYTVMIEHLVNLGK 222
            ++T +I  L ++G+
Sbjct: 446 ISFTSLIHGLCSIGE 460



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 1/132 (0%)

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
           T +YNI++  Y   G+  EAV   +++   G  P+  TY+++I++   +G+   A  VF 
Sbjct: 270 TRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFD 329

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMG 290
           ++     K  S  Y IL+ G+       + + LL+ M  DG  F  RA  + +    + G
Sbjct: 330 SMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHG 389

Query: 291 FIQGANEFLREM 302
            +  A     EM
Sbjct: 390 AVDKAMTAFTEM 401



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 2/137 (1%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNE-YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
           + +L+  Y  +G +E  L+ + E +R+  K  +  S NI++    + G+   A E + ++
Sbjct: 553 YNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITS-NIMLHGLFQAGRIVAARELYMKM 611

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
           +D G      TY  ++  L     +D AL +F  L     +   + + I++   + V R 
Sbjct: 612 VDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRI 671

Query: 259 DEAKSLLNEMRDDGKFP 275
           DEAKSL + M   G  P
Sbjct: 672 DEAKSLFSAMVLRGPVP 688



 Score = 43.1 bits (100), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 28/133 (21%), Positives = 56/133 (42%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           +++ Y + G LE  +    +           +Y++++  Y K G+  EA   F  ++ +G
Sbjct: 276 MIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKG 335

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             PNS  Y +++      G L    ++   +    I    + + IL+  +      D+A 
Sbjct: 336 QKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAM 395

Query: 263 SLLNEMRDDGKFP 275
           +   EMR +G  P
Sbjct: 396 TAFTEMRQNGLRP 408


>gi|413934035|gb|AFW68586.1| hypothetical protein ZEAMMB73_127077 [Zea mays]
          Length = 800

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 89/222 (40%), Gaps = 5/222 (2%)

Query: 58  LSSLLNDRLLDPFIVTHALRS---APNADSALSIMEALKSNPNFSHNQSTLHALATVLAK 114
           L S L  RL  P + + A+     A +AD+A+    A           +   AL    A 
Sbjct: 92  LFSALTPRLRSPLLHSRAVVPILLATDADAAMYDAIADAQAAGLQPPTAAFEALIFAHAS 151

Query: 115 SQRNHELKTLIGDISSSKFLNVSVNFMN--LMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
           + R+HE       +        +    N  L    ++ G + L L+ +N       L + 
Sbjct: 152 AGRHHEAVEAFSRMEGEFGCRPTTFVYNAVLRVLVASGGAVPLALALYNRMVAAGCLPNR 211

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            +YN+++    K G   +A++ F ++I  G  PN +T+T+++  + N G+L  A  +  +
Sbjct: 212 ATYNVLIHGLCKRGTPVDALKLFDEMISRGITPNVKTHTILLSSMCNAGQLKEAENLLHS 271

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
           +           Y   + G     R DEA   L  +R  G F
Sbjct: 272 MEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRHTGTF 313



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 4/122 (3%)

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
           +E+   ++    ++G+  +A +  R +ID G +P+  TY  ++  L  +  LD AL +F 
Sbjct: 506 SETLQKLVESMCQSGQVLKAYKLLRGIIDSGVVPDVVTYNTLLNGLCKVRNLDGALRLFR 565

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG----RAMRVALERMQ 287
            L +         Y  L++  +   R+++A +L  ++   G  P      +M  +L RMQ
Sbjct: 566 ELQVKGFPLDEITYGTLIDSLLRAHRYNDALTLFQDILHSGGTPSMPIYNSMMRSLCRMQ 625

Query: 288 EM 289
           ++
Sbjct: 626 KL 627



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 36/80 (45%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+  L K     DA+ + +EMI  GI P+V+T + L+      G  K  + L   + 
Sbjct: 214 YNVLIHGLCKRGTPVDALKLFDEMISRGITPNVKTHTILLSSMCNAGQLKEAENLLHSME 273

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
             G  PD   +   +   CK
Sbjct: 274 DKGCPPDEVTYNAFLSGLCK 293



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 58/294 (19%), Positives = 114/294 (38%), Gaps = 22/294 (7%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNP 96
           L+ S+  A +   + +L   + D+   P  VT+      L  A   D A+  +EAL+   
Sbjct: 252 LLSSMCNAGQLKEAENLLHSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRHTG 311

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM-QWYSTSGDLEL 155
            F         L   L  + R  E      ++     ++  +    +M +  + +G    
Sbjct: 312 TFVLGLKGYSCLIDGLFLAGRYEEGFQCYMEVLEQADVSPDIVLYTIMIRGCAEAGRTND 371

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
             + ++E +++     T  YN ++      G    A     +++    + +  TYT MI 
Sbjct: 372 AFAFFDEMKEKGFTPDTFCYNTLLKALCDAGDLDGARSLMSEMVRNNVVLDIHTYTTMII 431

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            L     +D A++VF  +  +    +   Y +L++G     R +EA+ L  +M + G  P
Sbjct: 432 GLCKEQLVDEAMQVFDGMVEVGCHPSVMTYNVLIDGLYRAHRLEEARMLFYKM-EVGNNP 490

Query: 276 GRAMRVAL---------------ERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
              +R+ L               E M + G +  A + LR ++    + +V  Y
Sbjct: 491 SLFLRLTLGANQVRDSETLQKLVESMCQSGQVLKAYKLLRGIIDSGVVPDVVTY 544



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 13/144 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++LY+ ++R   +  R  DA    +EM   G  PD   ++ L+      GD    + L S
Sbjct: 353 IVLYTIMIRGCAEAGRTNDAFAFFDEMKEKGFTPDTFCYNTLLKALCDAGDLDGARSLMS 412

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEG 587
            + +N V  D + +  +I   CK             +      P   T  +L   L++  
Sbjct: 413 EMVRNNVVLDIHTYTTMIIGLCKEQLVDEAMQVFDGMVEVGCHPSVMTYNVLIDGLYRAH 472

Query: 588 RRKEAAAVEERCEKINDVPSLALR 611
           R +EA  +  + E  N+ PSL LR
Sbjct: 473 RLEEARMLFYKMEVGNN-PSLFLR 495


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 81/372 (21%), Positives = 149/372 (40%), Gaps = 37/372 (9%)

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
           F ++  +G  P+  +YT MI  L   G+L  A E+F+ +   R    +  Y  ++ G+  
Sbjct: 6   FHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGS 65

Query: 255 VERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRI-KNVRY 313
             RF++A  LL  +R+ G  P                +   N  L  +   +++ + +  
Sbjct: 66  AGRFEDAYKLLERLRERGCIPS---------------VVSFNSILTCLGKKRKVDEALSL 110

Query: 314 YEDGSDDDEDENDDNNSGV-RIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWT 372
           +E    D E  +   N  +  +  G +++           LDE   E  SL  +   + T
Sbjct: 111 FEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAY------RILDEM--EHASLFPN---LLT 159

Query: 373 TRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKL 432
             ++   L   +  E A+  F   A Q G   D      ++  L + G V+   RL  K+
Sbjct: 160 VNIMVDRLCKARKLEEAYKIF-ESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKM 218

Query: 433 RSDGMRL-PFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTL 490
              G    P     LI +F+   +K D   K F +  R  C P      + L ++ +  +
Sbjct: 219 LDAGHNANPVVYTSLIRNFFIHGRKEDGH-KIFKELIRRGCKPD-----LTLLNTYMDCV 272

Query: 491 TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA 550
            K         + E++   G +PDV+++S L++     G  +    +F  ++Q G   DA
Sbjct: 273 FKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDA 332

Query: 551 YMFKVLIQAYCK 562
             +  ++  +CK
Sbjct: 333 RAYNAVVDGFCK 344



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 69/149 (46%)

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
           DI S  FL    ++  L+   + +G      + ++  +Q+   L   +YN V+  + K+G
Sbjct: 287 DIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSG 346

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
           K  +A E   ++ ++   P   TY  +++ L  + +LD A  +F       I+     Y 
Sbjct: 347 KVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYS 406

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            L++GF  V R DEA  +L EM   G  P
Sbjct: 407 SLIDGFGKVGRIDEAYLILEEMMKKGLTP 435



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/205 (19%), Positives = 90/205 (43%), Gaps = 1/205 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+ H L  A  A    +I  A+K    F+ +    +A+     KS + H+   ++ ++  
Sbjct: 302 ILIHGLTKAGQARETSNIFHAMKQQ-GFALDARAYNAVVDGFCKSGKVHKAYEILEEMKE 360

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                    +  ++   +    L+     + E + +   L+   Y+ ++  + K G+  E
Sbjct: 361 KCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDE 420

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A     +++ +G  PN  T+  +++ LV   +++ AL  F ++  M+    +  Y IL+ 
Sbjct: 421 AYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILIN 480

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP 275
           G   V+++++A     +M+  G  P
Sbjct: 481 GLCRVQKYNKAFVFWQDMQKQGLVP 505



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 86/455 (18%), Positives = 170/455 (37%), Gaps = 35/455 (7%)

Query: 111 VLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLL 170
           VL K+ R  E + L   + + + +  +  +  ++  Y ++G  E         R+R  + 
Sbjct: 27  VLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIP 86

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           S  S+N +++   K  K  EA+  F +V+ + A PNS TY ++I+ L   G+++ A  + 
Sbjct: 87  SVVSFNSILTCLGKKRKVDEALSLF-EVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRIL 145

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEM 289
             +    +        I+V+      + +EA  +       G  P      +L + + + 
Sbjct: 146 DEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKK 205

Query: 290 GFIQGANEFLREMLPDKRIKNVRYYEDGSDD--DEDENDDNNSGVRIAYGVQLKPWLDPK 347
           G +  A     +ML      N   Y     +       +D +   +       KP L   
Sbjct: 206 GQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDL--- 262

Query: 348 ALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY 407
            L NT        +  +  A  V   R++ + +R +                 G+  DV 
Sbjct: 263 TLLNTY-------MDCVFKAGEVEKGRMIFEDIRSY-----------------GFLPDVR 298

Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDD 467
           +   ++  L + G       +   ++  G  L       ++D +  S K   A +   + 
Sbjct: 299 SYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEM 358

Query: 468 RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
           +  C   +    +  Y +++  L K  R  +A  + EE    GI  +V  +S L+  F  
Sbjct: 359 KEKCVQPT----VATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGK 414

Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            G       +   + + G+ P+ Y +  L+ A  K
Sbjct: 415 VGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVK 449



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 107/532 (20%), Positives = 203/532 (38%), Gaps = 53/532 (9%)

Query: 49  AVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQS 103
           A R   +  L   L +R   P +V+       L      D ALS+ E +K +     N S
Sbjct: 66  AGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDA--EPNSS 123

Query: 104 TLHALATVLAKSQRNHELKTLIGDIS-SSKFLNV-SVNFMNLMQWYSTSGDLELVLSTWN 161
           T + +  +L    R  E   ++ ++  +S F N+ +VN M  +     +  LE     + 
Sbjct: 124 TYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIM--VDRLCKARKLEEAYKIFE 181

Query: 162 EYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG 221
              QR       +Y  ++    K G+  EA   F +++D G   N   YT +I +    G
Sbjct: 182 SASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHG 241

Query: 222 KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV----ERFDEAKSLLNEMRDDGKFPG- 276
           + +   ++F  L    I+R  K  L L+  ++         ++ + +  ++R  G  P  
Sbjct: 242 RKEDGHKIFKEL----IRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDV 297

Query: 277 RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAY 336
           R+  + +  + + G  +  +     M       + R Y    D         +  V  AY
Sbjct: 298 RSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVD-----GFCKSGKVHKAY 352

Query: 337 GVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWV 396
            +              L+E   + V        V T   +   L      + A+  F   
Sbjct: 353 EI--------------LEEMKEKCVQ-----PTVATYGAIVDGLAKIDRLDEAYMLF-EE 392

Query: 397 AYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK 456
           A   G   +V     ++    + G ++    ++ ++   G+     T   ++D    +++
Sbjct: 393 AKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEE 452

Query: 457 ADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
            + AL  F   + +  P + +     YS L+  L + ++   A    ++M   G+VP+V 
Sbjct: 453 INEALVCFQSMKEMKCPPNTYT----YSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVV 508

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSN 568
           T++ ++   A  G+      LF   + NG  PDA  F  LI+     +SN+N
Sbjct: 509 TYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEG----MSNAN 556


>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
 gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
          Length = 420

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 6/143 (4%)

Query: 166 RAKLLSTE-----SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           R KLL+++     SY+  ++   K G+  EA+E FR++ ++G+ P+S TY ++I  L   
Sbjct: 80  RPKLLNSQDTDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKD 139

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR 280
            +L+  + +   +       T   Y  L+ GF    R D A  +L+EM   G  P     
Sbjct: 140 AQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTY 199

Query: 281 VAL-ERMQEMGFIQGANEFLREM 302
            AL + + + G ++ A   L+EM
Sbjct: 200 TALIQGLCDCGEVERAILVLKEM 222



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 51/101 (50%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YN ++    K G+   A E    ++++G  P+  TYT +I+ L + G LD AL +   + 
Sbjct: 306 YNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMR 365

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              I   S  Y  L+ GF   +R D A  L+NEM+ +G  P
Sbjct: 366 AKGIVPNSVTYTTLINGFTQADRTDHALQLVNEMKSNGLMP 406



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 5/165 (3%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+        LE+ +S  +E + R    +  +Y  ++  +   G+   A++   ++   G
Sbjct: 132 LINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRG 191

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK--QYLILVEGFVGVERFDE 260
             PN+ TYT +I+ L + G+++ A+ V   + L   +       Y  L+ G      F+ 
Sbjct: 192 ITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEM 251

Query: 261 AKSLLNEMRDDGKFPGRAMRVALER--MQEMGFIQGANEFLREML 303
               L+EM   G FP  A   AL     Q+  F++ A   L EM+
Sbjct: 252 GMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAA-VLLNEMV 295



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 64/156 (41%), Gaps = 3/156 (1%)

Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
           G +   +  + E  ++     + +YNI+++   K  +    V    ++   G  P   TY
Sbjct: 105 GQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTY 164

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
           T +I      G++D+A+++   +    I   +  Y  L++G       + A  +L EM+ 
Sbjct: 165 TTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKL 224

Query: 271 DGK--FPGRAMRVAL-ERMQEMGFIQGANEFLREML 303
            G    P       L   + + G  +   EFL EM+
Sbjct: 225 RGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMI 260


>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 817

 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 92/213 (43%), Gaps = 21/213 (9%)

Query: 359 EVVSLLADAKFVWTTRLVCKVL-------RHFKSPETAWHFFCWVAYQPGYTHDVYALEK 411
           +V  +LA+ K ++ ++  C +L         F+    A+H  C      G + DVY    
Sbjct: 204 DVFPVLAN-KGMFPSKTTCNILLTSLVRATEFQKCCEAFHVVC-----KGVSPDVYLFTT 257

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
            +    + G VE    L +K+   G+     T   +ID  G+S + D A   F +     
Sbjct: 258 AINAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAF-MFKEKMVER 316

Query: 472 G--PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
           G  P      ++ YS L++ LTK KR  DA  VL+EM   G  P+V  ++ L+      G
Sbjct: 317 GVEPT-----LITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAG 371

Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
                 ++  ++   G+   +  +  LI+ YCK
Sbjct: 372 SLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCK 404



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 1/101 (0%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           +   ++ + K GK  EA+E F ++ + G +PN  TY  +I+ L   G+ D A      + 
Sbjct: 255 FTTAINAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMV 314

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              ++ T   Y ILV+G    +R  +A  +L EM + G FP
Sbjct: 315 ERGVEPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKG-FP 354



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 1/151 (0%)

Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
           +E  +  W + ++   +    +Y++++    K  +  E  + F +++     PN+  Y  
Sbjct: 583 VEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNH 642

Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +I      G+L  ALE+   +    I   S  Y  L++G   + R +EAK LL EMR +G
Sbjct: 643 LIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEG 702

Query: 273 KFPGRAMRVAL-ERMQEMGFIQGANEFLREM 302
             P      AL +   ++G +      LREM
Sbjct: 703 LEPNVFHYTALIDGYGKLGQMVKVECLLREM 733



 Score = 46.6 bits (109), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 6/166 (3%)

Query: 113 AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
            K++R  E + L  ++ S+     +V + +L+  Y  SG L + L    + + +    ++
Sbjct: 613 CKAERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNS 672

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            +Y  ++   +   +  EA     ++  EG  PN   YT +I+     GKL   ++V   
Sbjct: 673 ATYTSLIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALID---GYGKLGQMVKVECL 729

Query: 233 LPLMRIKRTSKQ---YLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           L  M  K        Y +++ G+       EA  LL+EMR+ G  P
Sbjct: 730 LREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLHEMREKGIVP 775



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 97/236 (41%), Gaps = 25/236 (10%)

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           +CK  +H K+ E    F        G+  D      +L  L   G +E   R+  ++   
Sbjct: 472 LCKHGKHSKAVELWLKFL-----NKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEILGR 526

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG--PISKFKLMLLYSSLLRTLTKC 493
           G  +   +   +I     +KK D A   F D+    G  P +       YS L+R L   
Sbjct: 527 GFVMDRVSYNTLISGCCGNKKLDEAF-MFMDEMVKKGLKPDN-----YTYSILIRGLLNM 580

Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
            +  +AI    +   +G++PDV T+S ++         +  QKLF  +  N ++P+  ++
Sbjct: 581 NKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVY 640

Query: 554 KVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
             LI AYC+             + +  + P++AT   L K +    R +EA  + E
Sbjct: 641 NHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLE 696



 Score = 43.1 bits (100), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 50/99 (50%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y+I++    K  +  +A    +++ ++G  PN   Y  +I+ L+  G L+ A+E+   +
Sbjct: 324 TYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLM 383

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
               +  TS  Y  L++G+    + D A+ LL EM   G
Sbjct: 384 VSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLSIG 422



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 1/133 (0%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           +T  YN ++  Y ++G+   A+E    +  +G  PNS TYT +I+ +  + +++ A  + 
Sbjct: 636 NTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLL 695

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEM 289
             + +  ++     Y  L++G+  + +  + + LL EM      P +    V +      
Sbjct: 696 EEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARD 755

Query: 290 GFIQGANEFLREM 302
           G +  A+  L EM
Sbjct: 756 GNVTEASRLLHEM 768



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/116 (19%), Positives = 51/116 (43%)

Query: 160 WNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219
           W ++  +  L+ T++ N ++    + GK  E     ++++  G + +  +Y  +I     
Sbjct: 485 WLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEILGRGFVMDRVSYNTLISGCCG 544

Query: 220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             KLD A      +    +K  +  Y IL+ G + + + +EA     + + +G  P
Sbjct: 545 NKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWGDCKRNGMIP 600


>gi|255661036|gb|ACU25687.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 376

 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 62/145 (42%)

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
           S F+  S+ +  ++  +  +G +   L        +  +L   +Y+ +++   K  K  +
Sbjct: 88  SGFVEDSITYGIIIDGFCKNGYINKSLHVLEIAEGKGGVLDAFAYSAMINGLCKEAKLDK 147

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           AV     +I  G  PN+  Y  +I   V   K D A+ VF  +  M    T   Y  L+ 
Sbjct: 148 AVSVLNGMIKSGCKPNAHVYNTLINGFVGASKFDDAIRVFREMGSMDCSPTIVTYHTLIN 207

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP 275
           G    ERF EA  L+ EM + G  P
Sbjct: 208 GLCKGERFSEAYDLVKEMLEKGWKP 232



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 64/131 (48%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V+F  +M+    +G+++  +S W   ++   +  + +Y I++  + K G   +++     
Sbjct: 60  VSFNIMMRGLFDNGEVDKAISIWELMKKSGFVEDSITYGIIIDGFCKNGYINKSLHVLEI 119

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
              +G + ++  Y+ MI  L    KLD A+ V + +     K  +  Y  L+ GFVG  +
Sbjct: 120 AEGKGGVLDAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNTLINGFVGASK 179

Query: 258 FDEAKSLLNEM 268
           FD+A  +  EM
Sbjct: 180 FDDAIRVFREM 190



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 93/216 (43%), Gaps = 18/216 (8%)

Query: 396 VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455
           +A   G   D +A   M+  L +   ++    ++  +   G +        +I+ +  + 
Sbjct: 119 IAEGKGGVLDAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNTLINGFVGAS 178

Query: 456 KADAALKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
           K D A++ F +  ++ C P      ++ Y +L+  L K +R  +A ++++EM+  G  P 
Sbjct: 179 KFDDAIRVFREMGSMDCSPT-----IVTYHTLINGLCKGERFSEAYDLVKEMLEKGWKPC 233

Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY----------- 563
           V T+S LM         ++  +L++ V   G +PD  M  +LI   C             
Sbjct: 234 VITYSLLMKGLCQGHKVEMALQLWNQVLSKGFKPDVQMHNILIHGLCSVGKTQHALMLYF 293

Query: 564 -LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
            +++ N  P+  T   L +  +K+G  + A  +  R
Sbjct: 294 DMNHWNCAPNLVTHNTLMEGFYKDGDIRNALVIWAR 329



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 81/209 (38%), Gaps = 11/209 (5%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + +    A   D A+ +   + S  + S    T H L   L K +R  E   L+ ++   
Sbjct: 170 LINGFVGASKFDDAIRVFREMGS-MDCSPTIVTYHTLINGLCKGERFSEAYDLVKEMLEK 228

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
            +    + +  LM+       +E+ L  WN+   +      + +NI++      GK   A
Sbjct: 229 GWKPCVITYSLLMKGLCQGHKVEMALQLWNQVLSKGFKPDVQMHNILIHGLCSVGKTQHA 288

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQ-----YL 246
           +  +  +      PN  T+  ++E     G + +AL +++     RI R+  Q     Y 
Sbjct: 289 LMLYFDMNHWNCAPNLVTHNTLMEGFYKDGDIRNALVIWA-----RILRSGLQPDIISYN 343

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           I ++G     R   A   L++      FP
Sbjct: 344 ITLKGLCSCNRISFAILFLHDALTKKIFP 372


>gi|15223927|ref|NP_177262.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169669|sp|Q9C9A2.1|PP112_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g71060, mitochondrial; Flags: Precursor
 gi|12323433|gb|AAG51696.1|AC016972_15 hypothetical protein; 31939-30407 [Arabidopsis thaliana]
 gi|332197036|gb|AEE35157.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 510

 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 4/165 (2%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           F +L+    +   L   L  +   +     L   +YN ++  Y  + +  +A +T  ++ 
Sbjct: 305 FCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMR 364

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
            +G  PN+RTY +++ HL+ + +   A EV+     M  + T   Y I+V  F   ER D
Sbjct: 365 LKGVGPNARTYDIILHHLIRMQRSKEAYEVYQT---MSCEPTVSTYEIMVRMFCNKERLD 421

Query: 260 EAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREML 303
            A  + +EM+  G  PG  M  +L   +     +  A E+  EML
Sbjct: 422 MAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEML 466



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 96/208 (46%), Gaps = 12/208 (5%)

Query: 359 EVVSLLADAKFVWTTRLVCKVLRHFKSPET-AWHFFCWVAYQPGYTHDVYALEKMLTILA 417
           +V +LL +A    +  L+ +VL+   +    A   F W   Q G+ H       ++  L 
Sbjct: 80  KVETLLNEASVKLSPALIEEVLKKLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESLG 139

Query: 418 RHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKF 477
           +    +L+  L+  +++  + L   T  LI   Y  ++K   A+ AFH        + +F
Sbjct: 140 KIKQFKLIWSLVDDMKAKKL-LSKETFALISRRYARARKVKEAIGAFH-------KMEEF 191

Query: 478 KLMLL---YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
              +    ++ +L TL+K +   DA  V ++M      PD+++++ L+  +  + +   V
Sbjct: 192 GFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQELNLLRV 251

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            ++   ++  G EPD   + ++I A+CK
Sbjct: 252 DEVNREMKDEGFEPDVVAYGIIINAHCK 279



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 95/228 (41%), Gaps = 45/228 (19%)

Query: 54  SSNSLSSLLNDR--LLDPFIVTHALRSAPNADS-ALSIMEALKSNPNFSHNQSTLHALAT 110
           + + + +LLN+    L P ++   L+   NA   ALS+ +  ++   F H  S  +AL  
Sbjct: 77  TDSKVETLLNEASVKLSPALIEEVLKKLSNAGVLALSVFKWAENQKGFKHTTSNYNALIE 136

Query: 111 VLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLL 170
            L K ++   + +L+ D+ +                                     KLL
Sbjct: 137 SLGKIKQFKLIWSLVDDMKAK------------------------------------KLL 160

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           S E++ ++   YA+  K  EA+  F ++ + G    S  +  M++ L     +  A +VF
Sbjct: 161 SKETFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVF 220

Query: 231 SALPLMRIKRTSKQYLILVEGF---VGVERFDEAKSLLNEMRDDGKFP 275
             +   R +   K Y IL+EG+   + + R DE      EM+D+G  P
Sbjct: 221 DKMKKKRFEPDIKSYTILLEGWGQELNLLRVDEVN---REMKDEGFEP 265



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 24/181 (13%)

Query: 116 QRN-----HELKTLIGDISSSKFLNVSVNFMN----------------LMQWYSTSGDLE 154
           QRN     H   +LI  + S K LN ++ F                  L+  Y  S  +E
Sbjct: 295 QRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRME 354

Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
               T +E R +    +  +Y+I++    +  ++ EA E ++ +  E   P   TY +M+
Sbjct: 355 DAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMSCE---PTVSTYEIMV 411

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
               N  +LD A++++  +    +      +  L+       + DEA    NEM D G  
Sbjct: 412 RMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIR 471

Query: 275 P 275
           P
Sbjct: 472 P 472



 Score = 42.4 bits (98), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 90/232 (38%), Gaps = 15/232 (6%)

Query: 77  RSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNV 136
           R    A  A   ME       F    S  + +   L+KS+   + + +   +   +F   
Sbjct: 176 RKVKEAIGAFHKMEEF----GFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPD 231

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
             ++  L++ +    +L  V     E +         +Y I+++ + K  K  EA+  F 
Sbjct: 232 IKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFN 291

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF-----SALPLMRIKRTSKQYLILVEG 251
           ++      P+   +  +I  L +  KL+ ALE F     S  PL      +  Y  LV  
Sbjct: 292 EMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPL-----EAPTYNALVGA 346

Query: 252 FVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREM 302
           +   +R ++A   ++EMR  G  P  R   + L  +  M   + A E  + M
Sbjct: 347 YCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTM 398



 Score = 39.7 bits (91), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 84/435 (19%), Positives = 164/435 (37%), Gaps = 87/435 (20%)

Query: 213 MIEHLVNLGKLDSALEVFS-ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
           +++ L N G L  AL VF  A      K T+  Y  L+E    +++F    SL+++M+  
Sbjct: 100 VLKKLSNAGVL--ALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAK 157

Query: 272 -----------GKFPGRAMRV-----ALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
                       +   RA +V     A  +M+E GF   +++F R +    + +NV    
Sbjct: 158 KLLSKETFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNV---- 213

Query: 316 DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL 375
                D  +  D     R       +P  D K+    L+ W  E+  L  D         
Sbjct: 214 ----GDAQKVFDKMKKKR------FEP--DIKSYTILLEGWGQELNLLRVD--------- 252

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
             +V R  K                G+  DV A   ++    +    E   R   ++   
Sbjct: 253 --EVNREMKDE--------------GFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQR 296

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR 495
             +        +I+  G  KK + AL+ F   ++   P+        Y++L+      +R
Sbjct: 297 NCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLE----APTYNALVGAYCWSQR 352

Query: 496 DFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV 555
             DA   ++EM   G+ P+ +T+  +++H       K   +++  +     EP    +++
Sbjct: 353 MEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTM---SCEPTVSTYEI 409

Query: 556 LIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIN 603
           +++ +C              +    ++P       L  +L  E +      ++E CE  N
Sbjct: 410 MVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENK------LDEACEYFN 463

Query: 604 DVPSLALR--GHIWA 616
           ++  + +R  GH+++
Sbjct: 464 EMLDVGIRPPGHMFS 478


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 105/242 (43%), Gaps = 14/242 (5%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           L+D + + + ++ A +  +A+S+M         + +  T   L     K++   E   L 
Sbjct: 310 LMDGYFLVYEVKKAQHVFNAMSLM-------GVTPDVHTYTILINGFCKNKMVDEALNLF 362

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
            ++     +   V + +L+     SG +  V    +E R R +     +Y+ ++    K 
Sbjct: 363 KEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKN 422

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
           G    A+  F ++ D+   PN  T+T++++ L   G+L  A EVF  L           Y
Sbjct: 423 GHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTY 482

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGKFPG----RAMRVALERMQEMGFIQGANEFLRE 301
            +++ G       +EA ++L++M D+G  P       + +AL +  E      A + LR+
Sbjct: 483 NVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDEN---DKAEKLLRQ 539

Query: 302 ML 303
           M+
Sbjct: 540 MI 541



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 70/165 (42%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L K Q   E   L  +++        V +  L+  +   G L+  +   NE   +    +
Sbjct: 209 LCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPN 268

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
             +YNI++    K GK  EA      ++     P+  TY+ +++    + ++  A  VF+
Sbjct: 269 VYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFN 328

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
           A+ LM +      Y IL+ GF   +  DEA +L  EM      PG
Sbjct: 329 AMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPG 373



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 8/164 (4%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD-- 458
           GY  D   L  ++  L   G V+       KL + G +L   +   +I+  G+ K  D  
Sbjct: 124 GYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLIN--GVCKIGDTR 181

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
            A+K     R + G ++K  + + YS+++  L K +   +A  +  EM   GI  DV T+
Sbjct: 182 GAIKLL---RKIDGRLTKPNVEM-YSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTY 237

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           S L+Y F ++G  K    L + +    + P+ Y + +L+ A CK
Sbjct: 238 STLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCK 281



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 89/426 (20%), Positives = 163/426 (38%), Gaps = 34/426 (7%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           +V    L++     G ++  L   ++   +   L+  SY  +++   K G    A++  R
Sbjct: 129 TVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLR 188

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           ++      PN   Y+ +I+ L     +  A  +FS + +  I      Y  L+ GF    
Sbjct: 189 KIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEG 248

Query: 257 RFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
           +  EA  LLNEM      P      + ++ + + G ++ A   L  ML      +V  Y 
Sbjct: 249 KLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYS 308

Query: 316 DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL 375
              D           G  + Y V+    +     A +L   +P+V +           ++
Sbjct: 309 TLMD-----------GYFLVYEVKKAQHVFN---AMSLMGVTPDVHTYTILINGFCKNKM 354

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           V + L  FK             +Q      +     ++  L + G +  V  LI ++R  
Sbjct: 355 VDEALNLFKE-----------MHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDR 403

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFH--DDRTLCGPISKFKLMLLYSSLLRTLTKC 493
           G      T   +ID    +   D A+  F+   D+ +   I  F +      LL  L K 
Sbjct: 404 GQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTI------LLDGLCKG 457

Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
            R  DA  V ++++  G   +V T++ ++     QG  +    + S +  NG  P+A+ F
Sbjct: 458 GRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTF 517

Query: 554 KVLIQA 559
           + +I A
Sbjct: 518 ETIIIA 523



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 12/118 (10%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+  L K  +  +A +VL  M+ + + PDV T+S LM  + L  + K  Q +F+ + 
Sbjct: 272 YNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMS 331

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGR 588
             GV PD + + +LI  +CK             +   N++P   T   L   L K GR
Sbjct: 332 LMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGR 389



 Score = 42.4 bits (98), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 80/203 (39%), Gaps = 16/203 (7%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           +VY    ++  L + G V+    ++A +    ++    T   ++D Y +  +   A   F
Sbjct: 268 NVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVF 327

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
            +  +L G          Y+ L+    K K   +A+N+ +EM    +VP + T+S L+  
Sbjct: 328 -NAMSLMGVTPDVHT---YTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDG 383

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPD 572
               G    V  L   +R  G   D   +  LI   CK             + +  + P+
Sbjct: 384 LCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPN 443

Query: 573 AATKELLKKSLWKEGRRKEAAAV 595
             T  +L   L K GR K+A  V
Sbjct: 444 IFTFTILLDGLCKGGRLKDAQEV 466



 Score = 42.0 bits (97), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 43/221 (19%), Positives = 89/221 (40%), Gaps = 5/221 (2%)

Query: 95  NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
           NPN      T + L   L K  +  E K+++  +  +      + +  LM  Y    +++
Sbjct: 266 NPNVY----TYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVK 321

Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
                +N            +Y I+++ + K     EA+  F+++  +  +P   TY+ +I
Sbjct: 322 KAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLI 381

Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
           + L   G++    ++   +           Y  L++G       D A +L N+M+D    
Sbjct: 382 DGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIR 441

Query: 275 PG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
           P      + L+ + + G ++ A E  +++L      NV  Y
Sbjct: 442 PNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTY 482


>gi|326527465|dbj|BAK08007.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 363

 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 78/175 (44%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           +    + L   L +  R +E  +L+ ++        ++ +  LM +   +  ++     +
Sbjct: 176 DTCCFNILIKGLCQFGRFNEALSLLDEMPKQDCRPNAMTYSTLMHFLCRNCRVDEAFELF 235

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
              R+      T  YNI++S   + G+   A + F+ +  +G  PNS TY V+++ LV  
Sbjct: 236 ERMRKEEIDADTVVYNILVSGLCREGRVTSAYDLFKSMSSQGCHPNSGTYQVLLDGLVAS 295

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                A ++   +    ++ +   Y +L++GF  V   D+A  +L +M D G  P
Sbjct: 296 KNFVEAKDLVGMMSAESLRPSFSSYKLLIDGFCSVNCLDDAHHVLKQMVDQGFVP 350



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 64/119 (53%), Gaps = 4/119 (3%)

Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE-AVETFRQVIDEGAIPNSRT 209
           GD+E +L+     R R    S + +  ++ +Y     + E A+ET   + + G  P+++T
Sbjct: 88  GDVEELLARARAERFR---FSDDFFYRLIKMYGNVANHPEKAMETLYAMSEYGCWPSTKT 144

Query: 210 YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           +  ++  LV   + +   EV+S+ P + ++  +  + IL++G     RF+EA SLL+EM
Sbjct: 145 FNYVLHMLVCRRQYEVVHEVYSSAPRLGVELDTCCFNILIKGLCQFGRFNEALSLLDEM 203



 Score = 46.2 bits (108), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 46/106 (43%)

Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
           L T  +NI++    + G+  EA+    ++  +   PN+ TY+ ++  L    ++D A E+
Sbjct: 175 LDTCCFNILIKGLCQFGRFNEALSLLDEMPKQDCRPNAMTYSTLMHFLCRNCRVDEAFEL 234

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           F  +    I   +  Y ILV G     R   A  L   M   G  P
Sbjct: 235 FERMRKEEIDADTVVYNILVSGLCREGRVTSAYDLFKSMSSQGCHP 280



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 12/115 (10%)

Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           A+  L  M   G  P  +TF+ +++    +   ++V +++S   + GVE D   F +LI+
Sbjct: 126 AMETLYAMSEYGCWPSTKTFNYVLHMLVCRRQYEVVHEVYSSAPRLGVELDTCCFNILIK 185

Query: 559 AYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEK 601
             C++            +   +  P+A T   L   L +  R  EA  + ER  K
Sbjct: 186 GLCQFGRFNEALSLLDEMPKQDCRPNAMTYSTLMHFLCRNCRVDEAFELFERMRK 240


>gi|302805861|ref|XP_002984681.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
 gi|300147663|gb|EFJ14326.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
          Length = 651

 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 81/399 (20%), Positives = 139/399 (34%), Gaps = 97/399 (24%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           +M  Y+  GD       W +            YNI++  + K G+  +A+     +    
Sbjct: 331 IMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANR 390

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
            +P   TYT +++  V  G +  ALEVF  +    ++     Y  L+ G     + + A+
Sbjct: 391 LLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENAR 450

Query: 263 SLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDD 321
            +LNEM  +G  P   +  AL E     G ++ A    + M  +    ++          
Sbjct: 451 LMLNEMLANGVVPSERIYTALTEGYARTGDVEKAFGVFQRMKKENLAIDI---------- 500

Query: 322 EDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLR 381
                       +AYG  LK   +  A+       + EV   + DA         C +L 
Sbjct: 501 ------------VAYGALLKACCNSGAM-----HGAAEVFQQITDAGLKHNQITYCTMLD 543

Query: 382 HFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPF 441
                          AY                  AR G VE  + L++ +  DG +   
Sbjct: 544 G--------------AY------------------ARAGRVEEAEELVSAMERDGTKPDT 571

Query: 442 STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK-CKRDFDAI 500
                +I+ YG+S +        H+D           +  L + ++++ +K  K D    
Sbjct: 572 LIYNSLINAYGVSGR--------HED-----------MEALLAKMVKSSSKQTKPDIGTY 612

Query: 501 NVL------------EEMIFSG-----IVPDVQTFSGLM 522
           N L             E +F G     +VPD  T++ LM
Sbjct: 613 NTLIQVYAQAGFIPRAEELFQGLARLKLVPDATTWTALM 651



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/217 (20%), Positives = 97/217 (44%), Gaps = 8/217 (3%)

Query: 58  LSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVL 112
           L ++  +RLL P I T+           N   AL + + +K+         + ++L + L
Sbjct: 383 LENIEANRLL-PTIETYTSILDGYVKGGNIQKALEVFDRIKT-AGLRPGVVSYNSLLSGL 440

Query: 113 AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
           AK+++    + ++ ++ ++  +     +  L + Y+ +GD+E     +   ++    +  
Sbjct: 441 AKARQMENARLMLNEMLANGVVPSERIYTALTEGYARTGDVEKAFGVFQRMKKENLAIDI 500

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH-LVNLGKLDSALEVFS 231
            +Y  ++     +G    A E F+Q+ D G   N  TY  M++      G+++ A E+ S
Sbjct: 501 VAYGALLKACCNSGAMHGAAEVFQQITDAGLKHNQITYCTMLDGAYARAGRVEEAEELVS 560

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           A+     K  +  Y  L+  +    R ++ ++LL +M
Sbjct: 561 AMERDGTKPDTLIYNSLINAYGVSGRHEDMEALLAKM 597



 Score = 46.2 bits (108), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 29/143 (20%), Positives = 64/143 (44%), Gaps = 20/143 (13%)

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL 479
           G++E V+ L+A++  +G +        +++ +   +  +  L  FH              
Sbjct: 250 GNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHR------------- 296

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
                  L+   +      A+++LEEM   G+ P+   ++ +M  +A  GD     K++ 
Sbjct: 297 -------LKVSPQAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWE 349

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK 562
            +   G++PD  ++ +L+ A+CK
Sbjct: 350 DMVSAGLKPDIVIYNILVHAFCK 372



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 72/403 (17%), Positives = 156/403 (38%), Gaps = 19/403 (4%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           Y +++  YA+ G    A  TF  +      PN   YT +I        ++ A+     + 
Sbjct: 134 YGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEML 193

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQ 293
              I+     +  ++ G+      + A+    + + +   PG  +  ++ +   + G ++
Sbjct: 194 SQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNME 253

Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTL 353
                L +M  +    N+  Y    +   +  D+      +++  +LK       +A  L
Sbjct: 254 TVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKC---LSFFHRLKVSPQAGNMAKAL 310

Query: 354 DEWSPEVVSLLADAKFVWTTRLVCKVLRH--FKSPETAWHFFCWVAYQPGYTHDVYALEK 411
           D         ++  K ++   ++    R   F +    W        +P    D+     
Sbjct: 311 DILEEMDKHGVSPNKMIYAM-IMDGYARGGDFTAAFKVWEDMVSAGLKP----DIVIYNI 365

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           ++    + G ++    ++  + ++ +     T   I+D Y        AL+ F  DR   
Sbjct: 366 LVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVF--DRIKT 423

Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
             +     ++ Y+SLL  L K ++  +A  +L EM+ +G+VP  + ++ L   +A  GD 
Sbjct: 424 AGLRPG--VVSYNSLLSGLAKARQMENARLMLNEMLANGVVPSERIYTALTEGYARTGDV 481

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAA 574
           +    +F  +++  +  D   +  L++A C    NS  M  AA
Sbjct: 482 EKAFGVFQRMKKENLAIDIVAYGALLKACC----NSGAMHGAA 520



 Score = 43.5 bits (101), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 38/204 (18%), Positives = 76/204 (37%), Gaps = 36/204 (17%)

Query: 108 LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA 167
           L     K+ R  +   ++ +I +++ L     + +++  Y   G+++  L  ++  +   
Sbjct: 366 LVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAG 425

Query: 168 KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH----------- 216
                 SYN ++S  AK  +   A     +++  G +P+ R YT + E            
Sbjct: 426 LRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPSERIYTALTEGYARTGDVEKAF 485

Query: 217 ------------------------LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG- 251
                                     N G +  A EVF  +    +K     Y  +++G 
Sbjct: 486 GVFQRMKKENLAIDIVAYGALLKACCNSGAMHGAAEVFQQITDAGLKHNQITYCTMLDGA 545

Query: 252 FVGVERFDEAKSLLNEMRDDGKFP 275
           +    R +EA+ L++ M  DG  P
Sbjct: 546 YARAGRVEEAEELVSAMERDGTKP 569


>gi|297807861|ref|XP_002871814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317651|gb|EFH48073.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 459

 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 6/208 (2%)

Query: 372 TTRLVCKVLRHF-KSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIA 430
           T+  V +VLR   +S   +  FF W    P YT      E++   LA H   E + +++ 
Sbjct: 76  TSEFVFRVLRATSRSANDSLRFFNWARSNPSYTPTSMEYEELAKSLASHKKYESMWKILK 135

Query: 431 KLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTL 490
           +++   + +   T+  II+ YG +   D A++ F+      G         +Y++LL  L
Sbjct: 136 QMKDLSLDISGETLCFIIEQYGKNGHVDQAVELFNGVPKTLGCQQTVD---VYNALLHAL 192

Query: 491 TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA 550
              K    A  ++  MI  G+ PD +T++ L+  +   G  K  Q+    + + G  P A
Sbjct: 193 CDVKMFHGAYALIRRMIRKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSRKGFNPPA 252

Query: 551 YMFKVLIQAY--CKYLSNSNLMPDAATK 576
               +LI+      YL ++  + D  TK
Sbjct: 253 RGRDLLIEGLLNAGYLESAKEIVDKMTK 280



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/203 (19%), Positives = 83/203 (40%), Gaps = 15/203 (7%)

Query: 81  NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNH-------ELKTLIGDISSSKF 133
           +A+ +L      +SNP+++        LA  LA  ++         ++K L  DIS    
Sbjct: 90  SANDSLRFFNWARSNPSYTPTSMEYEELAKSLASHKKYESMWKILKQMKDLSLDISGETL 149

Query: 134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST-ESYNIVMSVYAKTGKNFEAV 192
             +       ++ Y  +G ++  +  +N   +      T + YN ++           A 
Sbjct: 150 CFI-------IEQYGKNGHVDQAVELFNGVPKTLGCQQTVDVYNALLHALCDVKMFHGAY 202

Query: 193 ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252
              R++I +G  P+ RTY +++    + GK+  A E    +        ++   +L+EG 
Sbjct: 203 ALIRRMIRKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSRKGFNPPARGRDLLIEGL 262

Query: 253 VGVERFDEAKSLLNEMRDDGKFP 275
           +     + AK ++++M   G  P
Sbjct: 263 LNAGYLESAKEIVDKMTKGGFVP 285


>gi|413945076|gb|AFW77725.1| ATP binding protein isoform 1 [Zea mays]
 gi|413945077|gb|AFW77726.1| ATP binding protein isoform 2 [Zea mays]
 gi|413945078|gb|AFW77727.1| ATP binding protein isoform 3 [Zea mays]
          Length = 634

 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 3/210 (1%)

Query: 67  LDPF-IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           +D F +   +  +A    +A+ + E ++ N  F     + + L   LAK     E + + 
Sbjct: 262 MDAFKVAIKSFAAAGEIKNAVGVFELMRKN-GFDDGVESFNCLLVALAKEGLGREARQVF 320

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
            D    ++     ++  LM  +  + +L      WNE  ++        +N ++    + 
Sbjct: 321 -DKMHGQYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMDPDVVVHNTMIEGLLRG 379

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
            +  EAV+ F  +  +G  PN  TYT++I      GK+D A+E F  +   + +     Y
Sbjct: 380 QRRPEAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATY 439

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             L+ G+   ++ D   ++L EM   G  P
Sbjct: 440 TCLLVGYGNAKQMDRVTAVLEEMTQKGCPP 469



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 6/103 (5%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+ L+R   K  +   A+   EEM  +   PDV T++ L+  +        V  +   + 
Sbjct: 404 YTMLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMT 463

Query: 543 QNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAAT--KELLKKSL 583
           Q G  PDA  +  LI    K L+N N+  DAA   K+++KK L
Sbjct: 464 QKGCPPDARTYNALI----KLLTNRNMPDDAARIYKKMIKKGL 502



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 53/254 (20%), Positives = 93/254 (36%), Gaps = 56/254 (22%)

Query: 375 LVCKVLRHFK-SPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
           +V  VL  FK +   ++ FF W     G+TH      KML IL +    E +  +I ++ 
Sbjct: 196 VVLAVLHRFKHAHRPSYRFFRWATVSGGFTHTTITYCKMLHILGKTRQFESMVAMIQEMG 255

Query: 434 SDGMRLPFSTIRLIIDFYGISKKADAALKAFH-------DDRTLCGPISKFKLMLL---- 482
             G  L     ++ I  +  + +   A+  F        DD      +  F  +L+    
Sbjct: 256 KAGA-LSMDAFKVAIKSFAAAGEIKNAVGVFELMRKNGFDDG-----VESFNCLLVALAK 309

Query: 483 ------------------------YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
                                   Y++L+      +   +A  V  EM+  G+ PDV   
Sbjct: 310 EGLGREARQVFDKMHGQYSPDLRSYTALMLAWCNARNLVEAGRVWNEMLEKGMDPDV-VV 368

Query: 519 SGLMYHFALQGDEKI-VQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LS 565
              M    L+G  +    K+F +++  G  P+ + + +LI+ +CK             + 
Sbjct: 369 HNTMIEGLLRGQRRPEAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKMDMAMECFEEMQ 428

Query: 566 NSNLMPDAATKELL 579
            +   PD AT   L
Sbjct: 429 EAKCQPDVATYTCL 442


>gi|302820365|ref|XP_002991850.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
 gi|300140388|gb|EFJ07112.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
          Length = 425

 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 85/452 (18%), Positives = 162/452 (35%), Gaps = 112/452 (24%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           ++  Y  S  +  V+  + E  +     +  +Y  V+    K G    A+E   ++I  G
Sbjct: 20  VIAAYGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMELLDKMIKTG 79

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P++    V+++ L     +D A ++F+++  M        Y IL+      +R +EA 
Sbjct: 80  LEPDTLLCNVVLDGLGKANMMDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEAT 139

Query: 263 SLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDD 321
            L +EM + G  P   A    ++   + G I+ A   L++ML                  
Sbjct: 140 LLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKML------------------ 181

Query: 322 EDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLR 381
            D+N              L P           D+++  + SL+        T L C++  
Sbjct: 182 -DKN--------------LAP-----------DDYT--LNSLITAVSRTGRTELACEIFE 213

Query: 382 HFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPF 441
             K              + G   +  +   ML    + G V L  + + ++ + G++   
Sbjct: 214 RMK--------------KSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNS 259

Query: 442 STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAIN 501
            T   +I+  G +K A  A K                                       
Sbjct: 260 ITFNTLINCLGRAKYASEAYK--------------------------------------- 280

Query: 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
           VL+EM  +G+ PDV T++ ++  FA  G+     ++F  + + G   +   + +LI A  
Sbjct: 281 VLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALV 340

Query: 562 KY------------LSNSNLMPDAATKELLKK 581
           K             +    ++PDA T  +L++
Sbjct: 341 KAGRYQDARDIYFDMKKKGILPDAITATVLQQ 372



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/204 (19%), Positives = 91/204 (44%), Gaps = 1/204 (0%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           +SA+ +++ +  + N + +  TL++L T ++++ R      +   +  S     +V+F  
Sbjct: 171 ESAMVVLKKM-LDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNA 229

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           ++     +G + L     +E   R    ++ ++N +++   +     EA +  +++   G
Sbjct: 230 MLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAG 289

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  TYT MIE     G +  A E+F  +           Y +L++  V   R+ +A+
Sbjct: 290 LTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDAR 349

Query: 263 SLLNEMRDDGKFPGRAMRVALERM 286
            +  +M+  G  P       L+++
Sbjct: 350 DIYFDMKKKGILPDAITATVLQQL 373



 Score = 47.0 bits (110), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 41/205 (20%), Positives = 81/205 (39%), Gaps = 1/205 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           +V   L  A   D A  +  ++KS      +  T   L   L + +R+ E   L  ++  
Sbjct: 89  VVLDGLGKANMMDEACKLFASMKSM-GCPADDYTYAILIRSLGRCKRDEEATLLFDEMEE 147

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                 +  + N++  Y  +G +E  +    +   +       + N +++  ++TG+   
Sbjct: 148 RGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTEL 207

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A E F ++   G   N+ ++  M++     GK+  A +    +    IK  S  +  L+ 
Sbjct: 208 ACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLIN 267

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP 275
                +   EA  +L EMR  G  P
Sbjct: 268 CLGRAKYASEAYKVLQEMRSAGLTP 292


>gi|22327132|ref|NP_680234.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174514|sp|Q9LKU8.1|PP401_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g28460
 gi|9502149|gb|AAF88002.1| contains similarity to Pfam family PF01535 (Domain of unknown
           function), score=340.5, E=1.9e-98, N=2 [Arabidopsis
           thaliana]
 gi|15529206|gb|AAK97697.1| AT5g28460/F21B23_120 [Arabidopsis thaliana]
 gi|27363272|gb|AAO11555.1| At5g28460/F21B23_120 [Arabidopsis thaliana]
 gi|332006418|gb|AED93801.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 766

 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 95/200 (47%), Gaps = 4/200 (2%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + HA  S  N + A+   E +      S +    +AL + L + +R+H+   ++  +   
Sbjct: 482 LIHACCSVSNVEKAMYWYEKMLE-AGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEG 540

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
            F    + +  L+  +    + E V     +  +  K   + +YN ++S + K  K+FE+
Sbjct: 541 GFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLISFFGKH-KDFES 599

Query: 192 VE-TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM-RIKRTSKQYLILV 249
           VE    Q+ ++G  P   TY  +I+   ++G+LD AL++F  + L  ++   +  Y IL+
Sbjct: 600 VERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILI 659

Query: 250 EGFVGVERFDEAKSLLNEMR 269
             F  +  F +A SL  EM+
Sbjct: 660 NAFSKLGNFGQALSLKEEMK 679



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 75/161 (46%), Gaps = 5/161 (3%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           + G   D      +++   +H   E V+R++ ++R DG+    +T   +ID Y    + D
Sbjct: 574 KEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELD 633

Query: 459 AALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
            ALK F D     G  SK     ++Y+ L+   +K      A+++ EEM    + P+V+T
Sbjct: 634 EALKLFKD----MGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVET 689

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           ++ L      +   + + KL   + +   EP+    ++L++
Sbjct: 690 YNALFKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILME 730



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 39/198 (19%), Positives = 93/198 (46%), Gaps = 7/198 (3%)

Query: 370 VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
           VW TR +  + ++ ++  TAW     +  +     +      +L+ L R+  +  ++ L+
Sbjct: 260 VWLTRFISSLCKNARA-NTAWDILSDL-MKNKTPLEAPPFNALLSCLGRNMDISRMNDLV 317

Query: 430 AKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD---DRTLCGPISKFKLMLLYSSL 486
            K+    +R    T+ ++I+    S++ D AL+ F      RT  G + K    + +++L
Sbjct: 318 LKMDEVKIRPDVVTLGILINTLCKSRRVDEALEVFEQMRGKRTDDGNVIKAD-SIHFNTL 376

Query: 487 LRTLTKCKRDFDAINVLEEM-IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
           +  L K  R  +A  +L  M +    VP+  T++ L+  +   G  +  +++ S ++++ 
Sbjct: 377 IDGLCKVGRLKEAEELLVRMKLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDE 436

Query: 546 VEPDAYMFKVLIQAYCKY 563
           ++P+      ++   C++
Sbjct: 437 IKPNVVTVNTIVGGMCRH 454



 Score = 43.1 bits (100), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 50/93 (53%), Gaps = 5/93 (5%)

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
           C P +K     +Y +L+  L + +RD DAI V+E++   G   D+  ++ L+  F  + +
Sbjct: 507 CSPDAK-----IYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNN 561

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY 563
            + V ++ + + + G +PD+  +  LI  + K+
Sbjct: 562 AEKVYEMLTDMEKEGKKPDSITYNTLISFFGKH 594


>gi|297723047|ref|NP_001173887.1| Os04g0351333 [Oryza sativa Japonica Group]
 gi|255675359|dbj|BAH92615.1| Os04g0351333 [Oryza sativa Japonica Group]
          Length = 740

 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 99/226 (43%), Gaps = 18/226 (7%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D++    ++  L +   ++  +R++ ++   G R    T   +I  Y IS   + +
Sbjct: 113 GIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNES 172

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           ++ F    + CG I         +S +  L K  R  +A  + + M+  G  PD+ ++S 
Sbjct: 173 VRVF-KQMSSCGVIPTVDNC---NSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYST 228

Query: 521 LMYHFALQGDEKI--VQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSN 566
           +++ +A   D  +  V  +F+++   G+ P+ ++F +LI AY +             + N
Sbjct: 229 MLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQN 288

Query: 567 SNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRG 612
             ++PD  T   +  SL + GR  +A         I   PS A+ G
Sbjct: 289 KGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYG 334



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 88/184 (47%), Gaps = 7/184 (3%)

Query: 96  PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD--L 153
           P   +  S +HAL     K  R +E K +   +         +++  ++  Y+T+ D  L
Sbjct: 186 PTVDNCNSFIHALF----KHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCL 241

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
             V + +N    +    +   +NI+++ YA+ G   +A+  F  + ++G IP++ T+  +
Sbjct: 242 ADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATV 301

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD-DG 272
           I  L  +G+LD AL  F+ +  + +  +   Y  L++G        +AK L++EM + D 
Sbjct: 302 ISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDI 361

Query: 273 KFPG 276
             PG
Sbjct: 362 PPPG 365



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 45/80 (56%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           +SS++  L K  R  +  ++++ M+ +G  P+V TF+ LM  + L G+ +    L   + 
Sbjct: 369 FSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMA 428

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
             G+EP+ Y++  L+  YCK
Sbjct: 429 SIGIEPNCYIYGTLVDGYCK 448



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 26/176 (14%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS----GLMYHFALQGDEKIVQ 535
           +L+ +S+++ L K K    A +++++M+ SGI PD+ T+S    GL    A+   E++++
Sbjct: 83  ILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLE 142

Query: 536 KLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSL 583
           ++     + G  P++  +  LI  Y             K +S+  ++P          +L
Sbjct: 143 QMV----EAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHAL 198

Query: 584 WKEGRRKEAAAVEERCEKINDVP-----SLALRGHIWAVSSADLTRVHSIYRNSIT 634
           +K GR  EA  + +        P     S  L G+  A  S  L  VH+I+   +T
Sbjct: 199 FKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSC-LADVHNIFNLMLT 253



 Score = 43.5 bits (101), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 91/452 (20%), Positives = 165/452 (36%), Gaps = 44/452 (9%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +YN ++  Y+ +G   E+V  F+Q+   G IP        I  L   G+ + A  +F ++
Sbjct: 155 TYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSM 214

Query: 234 PLMRIKRTSKQYLILVEGFVGV--ERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMG 290
            L   K     Y  ++ G+         +  ++ N M   G  P +    + +      G
Sbjct: 215 VLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCG 274

Query: 291 FIQGANEFLREMLPDKRIKNVRYYED--------GSDDD--EDENDDNNSGV---RIAYG 337
            +  A     +M     I +   +          G  DD     N   + GV      YG
Sbjct: 275 MMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYG 334

Query: 338 VQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVA 397
             ++   +   L    +  S  +   +      + + ++  + +  +  E        V 
Sbjct: 335 CLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMV- 393

Query: 398 YQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA 457
            Q G   +V     ++      G++E    L+  + S G+         ++D Y  + + 
Sbjct: 394 -QTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRI 452

Query: 458 DAALKAFHDD-RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
           D AL  F D       P S     +LYS +L  L + +R   A  +  EMI SG    + 
Sbjct: 453 DDALTVFRDMLHKGVKPTS-----VLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSIH 507

Query: 517 TF----SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY--------- 563
           T+     GL  +        +++KLF+M     V+ D   F ++I A  K          
Sbjct: 508 TYGVVLGGLCRNNCTDEANMLLEKLFAM----NVKFDIITFNIVISAMFKVGRRQEAKEL 563

Query: 564 ---LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
              +S   L+P+  T  ++  +L KE   +EA
Sbjct: 564 FDAISTYGLVPNIQTYSMMITNLIKEESYEEA 595


>gi|15241779|ref|NP_198189.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|9502152|gb|AAF88005.1| similar to a large family of Arabidopsis thaliana salt inducible
           protein-like proteins; contains similarity to Pfam
           family PF01535 (Domain of unknown function),
           score=340.5, E=1.9e-98, N=2 [Arabidopsis thaliana]
 gi|332006410|gb|AED93793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 727

 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 95/200 (47%), Gaps = 4/200 (2%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + HA  S  N + A+   E +      S +    +AL + L + +R+H+   ++  +   
Sbjct: 482 LIHACCSVSNVEKAMYWYEKMLE-AGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEG 540

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
            F    + +  L+  +    + E V     +  +  K   + +YN ++S + K  K+FE+
Sbjct: 541 GFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLISFFGKH-KDFES 599

Query: 192 VE-TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM-RIKRTSKQYLILV 249
           VE    Q+ ++G  P   TY  +I+   ++G+LD AL++F  + L  ++   +  Y IL+
Sbjct: 600 VERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILI 659

Query: 250 EGFVGVERFDEAKSLLNEMR 269
             F  +  F +A SL  EM+
Sbjct: 660 NAFSKLGNFGQALSLKEEMK 679



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           + G   D      +++   +H   E V+R++ ++R DG+    +T   +ID Y    + D
Sbjct: 574 KEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELD 633

Query: 459 AALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
            ALK F D     G  SK     ++Y+ L+   +K      A+++ EEM    + P+V+T
Sbjct: 634 EALKLFKD----MGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVET 689

Query: 518 FSGL 521
           ++ L
Sbjct: 690 YNAL 693



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 39/198 (19%), Positives = 93/198 (46%), Gaps = 7/198 (3%)

Query: 370 VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
           VW TR +  + ++ ++  TAW     +  +     +      +L+ L R+  +  ++ L+
Sbjct: 260 VWLTRFISSLCKNARA-NTAWDILSDLM-KNKTPLEAPPFNALLSCLGRNMDISRMNDLV 317

Query: 430 AKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD---DRTLCGPISKFKLMLLYSSL 486
            K+    +R    T+ ++I+    S++ D AL+ F      RT  G + K    + +++L
Sbjct: 318 LKMDEVKIRPDVVTLGILINTLCKSRRVDEALEVFEQMRGKRTDDGNVIKAD-SIHFNTL 376

Query: 487 LRTLTKCKRDFDAINVLEEM-IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
           +  L K  R  +A  +L  M +    VP+  T++ L+  +   G  +  +++ S ++++ 
Sbjct: 377 IDGLCKVGRLKEAEELLVRMKLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDE 436

Query: 546 VEPDAYMFKVLIQAYCKY 563
           ++P+      ++   C++
Sbjct: 437 IKPNVVTVNTIVGGMCRH 454



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 50/93 (53%), Gaps = 5/93 (5%)

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
           C P +K     +Y +L+  L + +RD DAI V+E++   G   D+  ++ L+  F  + +
Sbjct: 507 CSPDAK-----IYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNN 561

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY 563
            + V ++ + + + G +PD+  +  LI  + K+
Sbjct: 562 AEKVYEMLTDMEKEGKKPDSITYNTLISFFGKH 594


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 93/484 (19%), Positives = 187/484 (38%), Gaps = 41/484 (8%)

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           ++SS  LN  VN  N  +     G  +          ++  +  T +Y+ V++   +  K
Sbjct: 412 LASSCVLN-KVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMK 470

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
             +A   F+++   G IP+  TYT++I+    +G ++ A   F  +  +    +   Y  
Sbjct: 471 VEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTA 530

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDK 306
           L+  ++  ++  +A  + + M D G  P      AL + + + G  Q A E   +M+   
Sbjct: 531 LLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTS 590

Query: 307 RIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLAD 366
                 +Y +G   D    +    G  I    +    +D + L + +     E   ++ D
Sbjct: 591 DNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYD 650

Query: 367 AKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVD 426
           A         CKV +   + E  +        + GY   V+    ++  + +   ++L  
Sbjct: 651 A----LIDGFCKVGKLDNAQEVFFRM-----SKCGYLPTVHTYTSLIDAMFKDRRLDLAI 701

Query: 427 RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSS 485
           ++++++          T   +ID      +   ALK     ++  C P      ++ Y+S
Sbjct: 702 KVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPN-----VVTYTS 756

Query: 486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
           L+  L K  +   ++ +  +MI  G  P+  T+  L+ H    G       L S ++Q  
Sbjct: 757 LIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQT- 815

Query: 546 VEPDAYMFKVLIQAYC--------KYLSNSNLMPD---------AATKELLKKSLWKEGR 588
                  +   +Q YC        K++++  L+ +         A    LL  S  K GR
Sbjct: 816 ------YWPKYVQGYCSVVQGFSKKFIASLGLLEELESHGMVSIAPVYGLLIDSFSKAGR 869

Query: 589 RKEA 592
            ++A
Sbjct: 870 LEKA 873



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 100/249 (40%), Gaps = 18/249 (7%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A  I++ L     F  + ST   + T L ++ +  +   L  ++ S   +     +  
Sbjct: 437 DKAFQIIK-LMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTI 495

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  +   G +E   S ++E        S  +Y  ++  Y KT +  +A + F +++D G
Sbjct: 496 LIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAG 555

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM----------------RIKRTSKQYL 246
             PN+ TY+ +++ L   G+   A EV++ +                    I      Y 
Sbjct: 556 CAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYG 615

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPD 305
            L++G     +  +A+ LL+ M  +G  P   +  AL +   ++G +  A E    M   
Sbjct: 616 ALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKC 675

Query: 306 KRIKNVRYY 314
             +  V  Y
Sbjct: 676 GYLPTVHTY 684



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 108/258 (41%), Gaps = 12/258 (4%)

Query: 48  LAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHA 107
           L V S++    + ++ D L+D F     L    NA      M      P       T  +
Sbjct: 634 LDVMSSNGCEPNHIIYDALIDGFCKVGKLD---NAQEVFFRMSKCGYLPTVH----TYTS 686

Query: 108 LATVLAKSQR-NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR 166
           L   + K +R +  +K L   + SS   NV V +  ++      G+ +  L   +   +R
Sbjct: 687 LIDAMFKDRRLDLAIKVLSQMLESSCTPNV-VTYTAMIDGLCRIGECQKALKLLSMMEKR 745

Query: 167 AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
               +  +Y  ++    K+GK   +++ F Q+I +G  PN  TY V+I H    G LD A
Sbjct: 746 GCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEA 805

Query: 227 LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALER 285
             + S +      +  + Y  +V+GF   ++F  +  LL E+   G         + ++ 
Sbjct: 806 HSLLSEMKQTYWPKYVQGYCSVVQGF--SKKFIASLGLLEELESHGMVSIAPVYGLLIDS 863

Query: 286 MQEMGFIQGANEFLREML 303
             + G ++ A E  +EM+
Sbjct: 864 FSKAGRLEKALELHKEMM 881



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 82/203 (40%), Gaps = 1/203 (0%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T  AL   L K+ +  + + L+  +SS+      + +  L+  +   G L+     +
Sbjct: 610 NVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVF 669

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
               +   L +  +Y  ++    K  +   A++   Q+++    PN  TYT MI+ L  +
Sbjct: 670 FRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRI 729

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM- 279
           G+   AL++ S +           Y  L++G     + D +  L  +M   G  P     
Sbjct: 730 GECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTY 789

Query: 280 RVALERMQEMGFIQGANEFLREM 302
           RV +      G +  A+  L EM
Sbjct: 790 RVLINHCCAAGLLDEAHSLLSEM 812



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 85/206 (41%), Gaps = 6/206 (2%)

Query: 69  PFIVTHA-----LRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT 123
           P +VT+      L  A     A  +++ + SN     N     AL     K  +    + 
Sbjct: 609 PNVVTYGALIDGLCKAHKVVDAQELLDVMSSN-GCEPNHIIYDALIDGFCKVGKLDNAQE 667

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           +   +S   +L     + +L+        L+L +   ++  + +   +  +Y  ++    
Sbjct: 668 VFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLC 727

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           + G+  +A++    +   G  PN  TYT +I+ L   GK+D +L++F+ +          
Sbjct: 728 RIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYV 787

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMR 269
            Y +L+         DEA SLL+EM+
Sbjct: 788 TYRVLINHCCAAGLLDEAHSLLSEMK 813


>gi|255660976|gb|ACU25657.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 376

 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 65/149 (43%)

Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
           ++ S F+  S  +  L+  +  +G ++  L       Q+  +L   +Y+ +++   K   
Sbjct: 85  MNESGFVEDSRTYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEAN 144

Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
              AV     +I  G  PN   Y  +I  LV   K + A+ VF  +  M    T   Y  
Sbjct: 145 LDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNT 204

Query: 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
           L+ GF   + F EA +L+ E+ D G  PG
Sbjct: 205 LINGFCKNKMFGEAYNLVKELLDKGLDPG 233



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 99/218 (45%), Gaps = 22/218 (10%)

Query: 396 VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455
           +A Q G   D +A   M+  L +  +++    ++  +   G +        +I+    + 
Sbjct: 119 MAEQKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGAS 178

Query: 456 KADAALKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
           K + A++ F +  T+ C P      ++ Y++L+    K K   +A N+++E++  G+ P 
Sbjct: 179 KFEDAIRVFREMGTMHCSPT-----IITYNTLINGFCKNKMFGEAYNLVKELLDKGLDPG 233

Query: 515 VQTFSGLMYHFALQGDEKIVQ--KLFSMVRQNGVEPDAYMFKVLIQAYCKY------LS- 565
           V T+S LM    L  D K+ +  +L++ V   G +PD  M  +LI+  C        LS 
Sbjct: 234 VITYSMLMEGLCL--DHKVARALQLWNQVTSKGFKPDVQMHNILIRGLCSVGKMQLALSL 291

Query: 566 --NSNL---MPDAATKELLKKSLWKEGRRKEAAAVEER 598
             + NL    P+  +   L +  +K+G  + A  +  R
Sbjct: 292 YFDMNLWKCAPNLVSHNTLMEGFYKDGDIRNALVIWAR 329



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/129 (22%), Positives = 58/129 (44%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           F  +M+    +G ++ V+S W    +   +  + +Y I++  + K G   +++       
Sbjct: 62  FNTMMRGLFDNGKVDEVISIWELMNESGFVEDSRTYGILVHGFCKNGYIDKSLHVLEMAE 121

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
            +G + ++  Y+ MI  L     LD A+ V + +     K     Y  L+ G VG  +F+
Sbjct: 122 QKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFE 181

Query: 260 EAKSLLNEM 268
           +A  +  EM
Sbjct: 182 DAIRVFREM 190



 Score = 39.7 bits (91), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 43/105 (40%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           S  S+N +M      GK  E +  +  + + G + +SRTY +++      G +D +L V 
Sbjct: 58  SVSSFNTMMRGLFDNGKVDEVISIWELMNESGFVEDSRTYGILVHGFCKNGYIDKSLHVL 117

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                      +  Y  ++ G       D A S+LN M   G  P
Sbjct: 118 EMAEQKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKP 162


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 1/126 (0%)

Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
           +T  Y  +M  + K GK  EAV    ++ D G  PN  TY  +I+ L   G +  A+  F
Sbjct: 478 NTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHF 537

Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEM 289
             +  + +    + Y  L++GF  +    +A  L+NEM D G    + +  +L +   + 
Sbjct: 538 DKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQ 597

Query: 290 GFIQGA 295
           G +QGA
Sbjct: 598 GDLQGA 603



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 3/144 (2%)

Query: 132 KFLNVSVNFMNLMQW---YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN 188
           K L V  N + L  +   +   G +   +  + + R R  + +  +Y  ++    K G+ 
Sbjct: 296 KRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRL 355

Query: 189 FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248
            +A+    +++ +G +PN  TYTVM++ L   GK+  A +V S +    +K     Y  L
Sbjct: 356 DDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTL 415

Query: 249 VEGFVGVERFDEAKSLLNEMRDDG 272
           + G    +  + A  LLNEM++ G
Sbjct: 416 IHGHFMNKNSERALDLLNEMKNKG 439



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 98/236 (41%), Gaps = 16/236 (6%)

Query: 56  NSLSSLLNDR-LLDPFIVTHA----LRSAPNADSALSIMEALKSNPN-------FSH--- 100
           ++L SLL D  LLD  +   A    LR  PN  +   I+  L  N         F H   
Sbjct: 137 DTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFEHLPA 196

Query: 101 -NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLST 159
            N  T + +   L K     E + L   + +       V + +L+  Y   G+LE V   
Sbjct: 197 PNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELL 256

Query: 160 WNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219
            +E R+        +YN +++ ++K G   +A   F ++   G + N  T +  ++    
Sbjct: 257 VSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCK 316

Query: 220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            G +  A+++F+ + +  +      Y  LV+G     R D+A  LL+EM   G  P
Sbjct: 317 EGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVP 372



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 81/184 (44%), Gaps = 4/184 (2%)

Query: 89  MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS 148
           M+A+  +P+      T ++L     K     E++ L+ ++  S      V +  L+  +S
Sbjct: 225 MKAMGCSPDVV----TYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALINCFS 280

Query: 149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSR 208
             G +E   S + E ++   + +  + +  +  + K G   EA++ F Q+   G +PN  
Sbjct: 281 KFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEF 340

Query: 209 TYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
           TYT +++     G+LD A+ +   +    +      Y ++V+G     +   A  +L+ M
Sbjct: 341 TYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLM 400

Query: 269 RDDG 272
              G
Sbjct: 401 ERAG 404



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 73/162 (45%), Gaps = 4/162 (2%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           + G   DV     ++   ++ G +E       +++  G+     T+   +D +       
Sbjct: 262 KSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVR 321

Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
            A+K F   R      ++F     Y+SL+    K  R  DAI +L+EM+  G+VP+V T+
Sbjct: 322 EAMKLFAQMRVRGMMPNEFT----YTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTY 377

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
           + ++     +G   +   + S++ + GV+ +  ++  LI  +
Sbjct: 378 TVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGH 419



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/258 (19%), Positives = 102/258 (39%), Gaps = 37/258 (14%)

Query: 81  NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNF 140
           N++ AL ++  +K N     + S    L   L K Q+  E K+L+  +        +V +
Sbjct: 424 NSERALDLLNEMK-NKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIY 482

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
             +M  +  +G     ++  ++        +  +Y  ++    K G  +EA+  F ++ +
Sbjct: 483 TTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRE 542

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALE---------------VFSALPLMRIKRTSKQ- 244
            G  PN + YT +I+    +G L  A+                V+++L    +K+   Q 
Sbjct: 543 LGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQG 602

Query: 245 -------------------YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALE 284
                              Y   + GF  +    EA+ +L+EM   G  P + A    + 
Sbjct: 603 AFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIR 662

Query: 285 RMQEMGFIQGANEFLREM 302
           + Q++G ++ A+    EM
Sbjct: 663 KYQKLGNMEEASSLQNEM 680



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 21/155 (13%)

Query: 419 HGHV-----ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK--KADAALKAFH--DDRT 469
           HGH      E    L+ ++++ GM L  S    +I  +G+ K  K D A    H  DD  
Sbjct: 417 HGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLI--WGLCKVQKLDEAKSLLHKMDD-- 472

Query: 470 LCG--PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
            CG  P +     ++Y++++    K  ++ +A+ +L ++  SG+ P+V T+  L+     
Sbjct: 473 -CGLRPNT-----VIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCK 526

Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            G        F  +R+ G++P+  ++  LI  +CK
Sbjct: 527 AGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCK 561



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 51/252 (20%), Positives = 96/252 (38%), Gaps = 52/252 (20%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           +V+    ++  L + G +     L  ++++ G      T   +ID YG            
Sbjct: 198 NVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGK----------- 246

Query: 465 HDDRTLCGPISKFKLML-------------LYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
                 CG + + +L++              Y++L+   +K      A +   EM   G+
Sbjct: 247 ------CGELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGV 300

Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY-------- 563
           + +V T S  +  F  +G  +   KLF+ +R  G+ P+ + +  L+   CK         
Sbjct: 301 MANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIV 360

Query: 564 ----LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAVSS 619
               + +  L+P+  T  ++   L KEG+   A          +DV SL  R  + A   
Sbjct: 361 LLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVA----------DDVLSLMERAGVKANEL 410

Query: 620 ADLTRVHSIYRN 631
              T +H  + N
Sbjct: 411 LYTTLIHGHFMN 422


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 91/198 (45%), Gaps = 16/198 (8%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           DV+    ++  L + G +++ ++L  +++  G+R    T   +ID    S++ D+A+  +
Sbjct: 292 DVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTY 351

Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
           H   T+         +++Y++LL  L K      A  +++EM   G+ PD  T++ L+  
Sbjct: 352 HQMLTM----GVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDG 407

Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPD 572
           +  +GD +   ++   + + GV  D   F  LI  +C            + +  + + PD
Sbjct: 408 YCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPD 467

Query: 573 AATKELLKKSLWKEGRRK 590
            AT  ++     K+G  K
Sbjct: 468 DATYTMVIDGYCKKGNVK 485



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/226 (21%), Positives = 100/226 (44%), Gaps = 26/226 (11%)

Query: 381 RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP 440
           R   S    +H    +  +P    D+     +L  L + G V    +L+ ++R  GM+  
Sbjct: 342 RRIDSAMNTYHQMLTMGVKP----DLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPD 397

Query: 441 FSTIRLIIDFYGISKKADAAL---KAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDF 497
             T   +ID Y      ++A+   K  +++  +   ++       +++L+    +  R  
Sbjct: 398 KITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVA-------FTALISGFCRDGRVR 450

Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           DA   L EM+ +G+ PD  T++ ++  +  +G+ K+  KL   ++ NG +P    + VL+
Sbjct: 451 DAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLM 510

Query: 558 QAYCK--YLSNSNLM----------PDAATKELLKKSLWKEGRRKE 591
              CK   + N+N++          PD  T  +L +   K G+ ++
Sbjct: 511 NGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGKAED 556



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 8/171 (4%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  +   G +      +NE R+R    +T S+N +++   K+ +N +     ++ ++E 
Sbjct: 229 LINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKS-RNLDEGFRLKKTMEEN 287

Query: 203 AI-PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
            I P+  TY+V+I  L   G+LD A ++F  +    ++     +  L++G     R D A
Sbjct: 288 RIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSA 347

Query: 262 KSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREML-----PDK 306
            +  ++M   G  P   M    L  + ++G +  A + + EM      PDK
Sbjct: 348 MNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDK 398



 Score = 46.2 bits (108), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 53/110 (48%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y++++    K G+   A + F ++   G  PN  T+T +I+      ++DSA+  +  +
Sbjct: 295 TYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQM 354

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
             M +K     Y  L+ G   V   ++A+ L++EMR  G  P +     L
Sbjct: 355 LTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTL 404



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 82/220 (37%), Gaps = 27/220 (12%)

Query: 395 WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS-DGMRLPFSTIRLIIDFYGI 453
           W++  P + H   +   M   L+ H   +    +I  L S  G     S    I+D  G 
Sbjct: 90  WLSSIPTFRHTSQSYCAMANFLSAHQMFQECQSIIRFLVSRKGKDSAASVFAAILDTAGT 149

Query: 454 SKKA---DAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAI---------- 500
                  DA + A+ D   +   I  F+L +  S+       C    D +          
Sbjct: 150 RCSNFVFDALMIAYWDSGFVSDAIQCFRL-VRNSNFQIPFHGCGYLLDKMINSNSPVTIW 208

Query: 501 NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
               E++  G  P VQ ++ L+  F  +G  +  + +F+ +R+ G+ P    F  LI   
Sbjct: 209 TFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGL 268

Query: 561 C------------KYLSNSNLMPDAATKELLKKSLWKEGR 588
           C            K +  + + PD  T  +L   L KEGR
Sbjct: 269 CKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGR 308



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 112/272 (41%), Gaps = 22/272 (8%)

Query: 37  LRRAQLI-DSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSN 95
           +R A+LI + IR      ++ S ++L+N            L  + N D    + + ++ N
Sbjct: 239 IRDAKLIFNEIRKRGLRPTTVSFNTLIN-----------GLCKSRNLDEGFRLKKTMEEN 287

Query: 96  PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLEL 155
             +  +  T   L   L K  R    + L  ++         + F  L+     S  ++ 
Sbjct: 288 RIYP-DVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDS 346

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE----GAIPNSRTYT 211
            ++T+++            YN +++   K G     V   R+++DE    G  P+  TYT
Sbjct: 347 AMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGD----VNKARKLVDEMRMVGMKPDKITYT 402

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
            +I+     G L+SA+E+   +    +   +  +  L+ GF    R  +A+  L EM + 
Sbjct: 403 TLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEA 462

Query: 272 GKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
           G  P  A   + ++   + G ++   + L+EM
Sbjct: 463 GMKPDDATYTMVIDGYCKKGNVKMGFKLLKEM 494



 Score = 43.5 bits (101), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 47/111 (42%)

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           + YNI+++ + K G   +A   F ++   G  P + ++  +I  L     LD    +   
Sbjct: 224 QYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKT 283

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
           +   RI      Y +L+ G     R D A+ L +EM+  G  P      AL
Sbjct: 284 MEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTAL 334



 Score = 42.7 bits (99), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 71/180 (39%), Gaps = 6/180 (3%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+      GD+       +E R         +Y  ++  Y K G    A+E  + 
Sbjct: 364 VMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKG 423

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           + +EG + ++  +T +I      G++  A      +    +K     Y ++++G+     
Sbjct: 424 MNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGN 483

Query: 258 FDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREML-----PDKRIKNV 311
                 LL EM+ +G  PG     V +  + + G ++ AN  L  ML     PD    N+
Sbjct: 484 VKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNI 543



 Score = 42.7 bits (99), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 42/80 (52%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           +++L+  L K +   +   + + M  + I PDV T+S L++    +G   + ++LF  ++
Sbjct: 261 FNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQ 320

Query: 543 QNGVEPDAYMFKVLIQAYCK 562
           Q G+ P+   F  LI   C+
Sbjct: 321 QRGLRPNGITFTALIDGQCR 340


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 101/474 (21%), Positives = 187/474 (39%), Gaps = 58/474 (12%)

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTES----------Y 175
           GDI   K L   +   N+     T   L   L    ++++ A++L T +          Y
Sbjct: 248 GDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAY 307

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
            ++    +K G+  +A++    ++  G  PN+ TY  +I  L   G++D AL +   +  
Sbjct: 308 TVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAK 367

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGA 295
              K     Y  LV+G  GV + DEA  LLN +    +F  +    A             
Sbjct: 368 KGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSK-EFHIKPDVFAF------------ 414

Query: 296 NEFLREMLPDKRIKNVR--YY---EDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALA 350
           N  ++E+   +R+++ +  YY   E G   +            + Y + +  +L    L 
Sbjct: 415 NLVIQELCKQRRLRHAKRVYYTMVERGFPSN-----------IVTYNILIDGYLSAGKLT 463

Query: 351 NTLDEWSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYA 408
             L+ W   V S ++     +T  +  +CK+    +    A   F       G    V  
Sbjct: 464 KALELWKDAVDSGISPNAATYTVLINGLCKM----QMLSIAKGLF-NKKRASGTRPTVSE 518

Query: 409 LEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR 468
              ++  L R   VE    L  ++R+        +  +IID  G  K  D  +++  +  
Sbjct: 519 YNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIID--GTLKAGD--VESAKELL 574

Query: 469 TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
                ++     + +S L+    K  +  +A ++ E M+  G VPD   F  L+  ++L+
Sbjct: 575 LEMLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLK 634

Query: 529 GD-EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKK 581
           G  EK+V  L  M  ++ V  D+ +   ++   C      N+  D   +++L K
Sbjct: 635 GKTEKVVSMLQQMADKD-VVLDSKLTSTILACLC------NMSKDVDIEKILPK 681



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 9/197 (4%)

Query: 76  LRSAPNADSALSI---MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSK 132
           LR A + D  +S+   M ++   P F+    +L AL      +Q+      ++G I    
Sbjct: 69  LRKAKHYDHVISVHSKMASVSVFPCFT----SLSALIESFVNTQKPSFAFGVLGLIMKRG 124

Query: 133 F-LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
           F LNV  NF  L++ +  SGD    +  +   ++   +    SYN V++   K  +  EA
Sbjct: 125 FHLNV-YNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLCKGKRLVEA 183

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
            E F+++      PNS T++ +I+     G ++    +   +  M ++     Y  L+ G
Sbjct: 184 KELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISG 243

Query: 252 FVGVERFDEAKSLLNEM 268
           F      +  K L NEM
Sbjct: 244 FCSKGDIERGKELFNEM 260



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 12/123 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++++  L K KR  +A  + +EM      P+  TFS L+  F   GD +    L   + 
Sbjct: 167 YNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEME 226

Query: 543 QNGVEPDAYMFKVLIQAYC--------KYLSNS----NLMPDAATKELLKKSLWKEGRRK 590
           + G+E D +++  LI  +C        K L N     N+ P+  T   L  +L K+ + K
Sbjct: 227 KMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWK 286

Query: 591 EAA 593
           EAA
Sbjct: 287 EAA 289



 Score = 46.6 bits (109), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 18/140 (12%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS-MV 541
           +S+L+    K     +   +LEEM   G+  DV  +S L+  F  +GD +  ++LF+ M+
Sbjct: 202 FSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEML 261

Query: 542 RQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRR 589
           R+N V P+   +  L+ A CK             ++   + PD     +L   L K GR 
Sbjct: 262 RKN-VTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRA 320

Query: 590 KEAAAVEE----RCEKINDV 605
            +A  V +    R E+ N+V
Sbjct: 321 SDAIKVLDLMVKRGEEPNNV 340



 Score = 45.4 bits (106), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 67/164 (40%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L K +R  E K L  ++   +    SV F  L+  +  +GD+E       E  +      
Sbjct: 174 LCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGD 233

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
              Y+ ++S +   G      E F +++ +   PN  TY+ ++  L    K   A ++  
Sbjct: 234 VFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLD 293

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            +   +++     Y +L +G     R  +A  +L+ M   G+ P
Sbjct: 294 TMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEP 337



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 1/224 (0%)

Query: 92  LKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG 151
           L+  PN   + S+ + L   L K++    + ++   ++S        +   L++ +  + 
Sbjct: 49  LQDYPNSIPSYSSCNTLIDNLRKAKHYDHVISVHSKMASVSVFPCFTSLSALIESFVNTQ 108

Query: 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT 211
                        +R   L+  ++N+++  + ++G + +A++ F  +     IP+  +Y 
Sbjct: 109 KPSFAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYN 168

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
            +I  L    +L  A E+F  +     K  S  +  L++GF      +E   LL EM   
Sbjct: 169 TVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKM 228

Query: 272 GKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
           G      +  AL       G I+   E   EML      NV  Y
Sbjct: 229 GLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTY 272



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 78/181 (43%), Gaps = 3/181 (1%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
           N + N  T   L   L K Q+  E   ++  ++  K     V +  L    S +G     
Sbjct: 264 NVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDA 323

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           +   +   +R +  +  +YN +++   K G+  +A+     +  +G  P+  TY+ +++ 
Sbjct: 324 IKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKG 383

Query: 217 LVNLGKLDSALEVFSAL--PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
           L  +GK+D A+++ + L      IK     + ++++      R   AK +   M + G F
Sbjct: 384 LCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERG-F 442

Query: 275 P 275
           P
Sbjct: 443 P 443



 Score = 43.5 bits (101), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 18/158 (11%)

Query: 474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
           +S F      S+L+ +    ++   A  VL  ++  G   +V  F+ L+  F   GD   
Sbjct: 88  VSVFPCFTSLSALIESFVNTQKPSFAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHK 147

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKK 581
              LF M+++N + PD   +  +I   C            K +      P++ T   L  
Sbjct: 148 AMDLFCMMKRNCLIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALID 207

Query: 582 SLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAVSS 619
              K G  +E   + E  EK      + L G ++  S+
Sbjct: 208 GFCKNGDVEEGFGLLEEMEK------MGLEGDVFVYSA 239


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 106/467 (22%), Positives = 168/467 (35%), Gaps = 71/467 (15%)

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
           RQ+    S  +YN  +   AK      A E F+Q+   G  P+  TY++++  L   G+L
Sbjct: 30  RQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGEL 89

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL 283
           D A E+   L    +K     Y ++++G     R D+A  +   M   G      +    
Sbjct: 90  DKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTF-- 147

Query: 284 ERMQEMGFIQGANEFLREMLPDKRIKNV-RYYEDGSDDDEDENDDNNSGVRIAYGVQLKP 342
                       N  L+ +   +R+      +E  +    + N        I+Y      
Sbjct: 148 ------------NSLLKGLCSGERMSEAFVLFEYMAKAGCEPN-------VISYST---- 184

Query: 343 WLDPKALANTLDE----WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAY 398
            LD    A  LDE    W  E+V        V  T  V  + +  +  E      C    
Sbjct: 185 LLDGLCKAGRLDEACRLWE-EMVEKSCVPDLVAYTSFVTGLCKANRVAEACD--CCRKMV 241

Query: 399 QPGYTHDVYALEKMLTILARHGHVELV-DRLIAKLRSDGM--------------RLPFST 443
             G   D  A   ++ IL + GH E   +++I  L   GM                P S 
Sbjct: 242 TKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSA 301

Query: 444 --IRLIIDFYGISKKADAALKAFHDDRTL----CGPISKFKLMLLYSSLLRTLTKCKRDF 497
                +I     SK+    +  F   +++    C P      +  Y+ ++  L K K+  
Sbjct: 302 ELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPN-----LETYNIMVDNLCKAKQLD 356

Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
           +A  ++ EM   G+ PDV T+S L+      G       L   + + GV PD++    ++
Sbjct: 357 EAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASIL 416

Query: 558 QAYCK------YLSNSNLM------PDAATKELLKKSLWKEGRRKEA 592
            A  K       LS+   M      PD  T   L   L K GR  EA
Sbjct: 417 NALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEA 463



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 89/223 (39%), Gaps = 38/223 (17%)

Query: 375 LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY-----------------ALEK------ 411
           +V +VLRH     T    F W+  Q GY H V+                 A EK      
Sbjct: 7   VVGEVLRHLGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQR 66

Query: 412 ------------MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
                       +L  L + G ++    L+ +LR  G++L   T  ++ID    + + D 
Sbjct: 67  RGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDD 126

Query: 460 ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
           AL+ F    +  G +     ++ ++SLL+ L   +R  +A  + E M  +G  P+V ++S
Sbjct: 127 ALEIFKTMSSGGGCVPD---VVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYS 183

Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
            L+      G      +L+  + +    PD   +   +   CK
Sbjct: 184 TLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCK 226



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 69/346 (19%), Positives = 128/346 (36%), Gaps = 65/346 (18%)

Query: 16  FTQLQTRSFVRAPFTNKLALY-LRRAQLIDSIR--LAVRSNSSNSLSSLLNDRLLDPFIV 72
           F Q+Q R +    FT  + L  L +A  +D  +  L     S   L+ +    ++D    
Sbjct: 61  FQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVID---- 116

Query: 73  THALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSK 132
                 A   D AL I + + S      +  T ++L   L   +R  E   L   ++ + 
Sbjct: 117 --GCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAG 174

Query: 133 FLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV 192
                +++  L+     +G L+     W E  +++ +    +Y   ++   K  +  EA 
Sbjct: 175 CEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEAC 234

Query: 193 ETFRQVIDEGAIPNSRTYTV-----------------MIEHLVNLGKLDSALEVF----- 230
           +  R+++ +G+  ++  ++                  MIEHL   G LD A + F     
Sbjct: 235 DCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMIS 294

Query: 231 -------------------------SALPLMRIKRTSKQYL--------ILVEGFVGVER 257
                                      L   R+K   + Y         I+V+     ++
Sbjct: 295 RNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQ 354

Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREM 302
            DEA+ L+NEM + G  P      AL + + ++G +  A + L EM
Sbjct: 355 LDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEM 400



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 5/156 (3%)

Query: 123 TLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVY 182
           T+IG +        + N M  ++    SG L+    T+ E   R    S E +N ++   
Sbjct: 254 TVIGILCKKGHAEEAQNQM--IEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAV 311

Query: 183 AKTGKNFEAVETFRQVIDEGAI---PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIK 239
            K+ +  + V  F+++         PN  TY +M+++L    +LD A E+ + +    + 
Sbjct: 312 CKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLS 371

Query: 240 RTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                Y  LV+G   + + D A  LL EM  +G FP
Sbjct: 372 PDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFP 407



 Score = 46.6 bits (109), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 9/128 (7%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y++LL  L K  R  +AI  L +M+ +   PDV +++ ++      G       +F 
Sbjct: 444 LVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQ 503

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK---------YLSNSNLMPDAATKELLKKSLWKEGRRK 590
            + + GV PD  ++  L+    +          L  S   PD    +++   L K G+ +
Sbjct: 504 EMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDFVMHKMVLDGLCKAGKAE 563

Query: 591 EAAAVEER 598
           +A  V ER
Sbjct: 564 DACEVVER 571



 Score = 40.0 bits (92), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 34/163 (20%), Positives = 66/163 (40%), Gaps = 1/163 (0%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+   L  A   D A  ++  + +N   S +  T  AL   L K  +      L+ ++S 
Sbjct: 344 IMVDNLCKAKQLDEAQELVNEM-ANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSK 402

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                 S    +++   S +G ++  LS     + R       +YN ++    K G+  E
Sbjct: 403 EGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDE 462

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           A+    +++     P+  +YT++I  L   G+   A  +F  +
Sbjct: 463 AITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEM 505



 Score = 39.3 bits (90), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 35/204 (17%), Positives = 80/204 (39%), Gaps = 2/204 (0%)

Query: 74  HALRSAPNADSALSIMEALKSNPNF--SHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           HA+  +      + + + +KS   F    N  T + +   L K+++  E + L+ ++++ 
Sbjct: 309 HAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANY 368

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
                 V +  L+      G L+       E  +      + +   +++  +K GK   A
Sbjct: 369 GLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYA 428

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
           +     +   G+ P+  TY  +++ L   G++D A+   + +   +       Y I++  
Sbjct: 429 LSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITA 488

Query: 252 FVGVERFDEAKSLLNEMRDDGKFP 275
                +   A ++  EM   G  P
Sbjct: 489 LCRSGQAAGAHAIFQEMVKRGVLP 512


>gi|255660926|gb|ACU25632.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 484

 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 4/188 (2%)

Query: 375 LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
           LV  VL   K+ E A  FF WV     + H+     K++ IL R   +     ++  +  
Sbjct: 14  LVYNVLHGAKNSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPK 73

Query: 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCK 494
            G+        L+ID YG       ++K F     L       + +  Y +L + + +  
Sbjct: 74  KGLEWDEDMWVLMIDSYGKEGIVQESVKLFQKMEEL----GVERTIKSYDALFKVIMRRG 129

Query: 495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK 554
           R   A     +M+  GI P   TF+ +++ F L G  +   + F  ++   + PD   + 
Sbjct: 130 RFMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVITYN 189

Query: 555 VLIQAYCK 562
            +I  YC+
Sbjct: 190 TMINGYCR 197



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 96/214 (44%), Gaps = 2/214 (0%)

Query: 56  NSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKS 115
           NS+ +L+     D  +V + L  A N++ AL     ++ +  F HN+ T   +  +L ++
Sbjct: 1   NSIRNLVPS--FDHELVYNVLHGAKNSEHALQFFRWVERSNLFEHNRETHLKIIEILGRA 58

Query: 116 QRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
            + +  + ++ D+           ++ ++  Y   G ++  +  + +  +     + +SY
Sbjct: 59  SKLNHARCILLDMPKKGLEWDEDMWVLMIDSYGKEGIVQESVKLFQKMEELGVERTIKSY 118

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           + +  V  + G+   A   F +++ EG  P   T+ VMI      GK+++A   F  +  
Sbjct: 119 DALFKVIMRRGRFMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKS 178

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
             I      Y  ++ G+  V++ +EA+    EM+
Sbjct: 179 REISPDVITYNTMINGYCRVKKMEEAEKYFVEMK 212



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 1/130 (0%)

Query: 142 NLMQW-YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
           N+M W +  SG +E     + + + R       +YN +++ Y +  K  EA + F ++  
Sbjct: 154 NVMIWGFFLSGKVETANRFFEDMKSREISPDVITYNTMINGYCRVKKMEEAEKYFVEMKG 213

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
           +   P   TYT +I+  V++ ++D AL +   +    IK  +  Y  L+ G    E+  E
Sbjct: 214 KNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSE 273

Query: 261 AKSLLNEMRD 270
           A+S+L EM D
Sbjct: 274 ARSILKEMVD 283


>gi|242048586|ref|XP_002462039.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
 gi|241925416|gb|EER98560.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
          Length = 798

 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 90/222 (40%), Gaps = 5/222 (2%)

Query: 58  LSSLLNDRLLDPFIVTHALRS---APNADSALSIMEALKSNPNFSHNQSTLHALATVLAK 114
           L S L  RL  P + + A+     A +AD+A+    A           +   AL    A 
Sbjct: 90  LFSALTPRLRSPLLHSRAVVPILLATDADAAMYDAIADAQAAGLQPPAAAFEALIFAHAS 149

Query: 115 SQRNHELKTLIGDISSSKFLNVSVNFMN--LMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
           + R+HE       +        +    N  L    ++ G + L L+ +N       L + 
Sbjct: 150 AGRHHEAVDAFSRMEGEFGCRPTTFVYNAVLRVLVASGGVVPLALALYNRMVAAGCLPNR 209

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
            +YN++M    K G   +A++ F +++  G  PN +T+T+++  + N G+L  A  + ++
Sbjct: 210 ATYNVLMDGLCKRGTAVDALKLFDEMLQRGITPNVKTHTILLSSMCNAGQLKEAENLLNS 269

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
           +           Y   + G     R DEA   L  +R  G F
Sbjct: 270 MEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRRTGTF 311



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/252 (20%), Positives = 107/252 (42%), Gaps = 7/252 (2%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNP 96
           L+ S+  A +   + +L + + D+   P  VT+      L  A   D A+  +EAL+   
Sbjct: 250 LLSSMCNAGQLKEAENLLNSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRRTG 309

Query: 97  NFSHNQSTLHALATVLAKSQRNHE-LKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLEL 155
            F         L   L  + R  E  +  +  +  + F    V +  +++  + +G ++ 
Sbjct: 310 TFVLGLKGYSCLIDGLFLAGRYEEGFQCYMEVLEQADFSPDIVLYTIMIRGCAEAGRIDD 369

Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
             + ++E +++     T  YN ++     +G    A     ++     + ++ T+T+MI 
Sbjct: 370 AFAFFDEMKEKRFTPDTFCYNTLLKALCDSGDLDGARSLMSEMAQNNVVLDTNTHTIMIH 429

Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            L     +D A++VF  +  +    T   Y +L++G     R +EA+ L  +M + G  P
Sbjct: 430 GLCKKQLVDEAMQVFDGMVEVGCHPTVMTYNVLIDGLYRAHRLEEARMLFYKM-EVGNNP 488

Query: 276 GRAMRVALERMQ 287
              +R+ L   Q
Sbjct: 489 SLFLRLTLGANQ 500



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 75/162 (46%), Gaps = 14/162 (8%)

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
           +ES   ++    ++G+  +A +  R ++D G +P+  TY  ++  L  +  LD AL +F 
Sbjct: 504 SESLQKLVDSMCQSGQVLKAYKLLRGIMDSGVVPDVVTYNTLLNGLCKVRNLDGALRLFR 563

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG----RAMRVALERMQ 287
            L +         Y  L++  +   R+++A +L  ++   G  P      ++  +L RM 
Sbjct: 564 ELQVKGFSLDEITYGTLIDSLLRAHRYNDAMTLFQDILHIGGTPSLSIYNSIMRSLCRMN 623

Query: 288 EMGFIQGANEFLREMLP-------DKRIKNVR-YYEDGSDDD 321
           ++   Q  N +   +L        D+ I + R  +E+GS D+
Sbjct: 624 KLS--QAINFWFDHLLKKYNLSAQDEVIASARKKFEEGSLDE 663



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 82/202 (40%), Gaps = 25/202 (12%)

Query: 429 IAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH--DDRTLCGPISKFKLMLLYSSL 486
           IA  ++ G++ P +    +I  +  + +   A+ AF   +    C P +      +Y+++
Sbjct: 125 IADAQAAGLQPPAAAFEALIFAHASAGRHHEAVDAFSRMEGEFGCRPTT-----FVYNAV 179

Query: 487 LRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
           LR L         A+ +   M+ +G +P+  T++ LM     +G      KLF  + Q G
Sbjct: 180 LRVLVASGGVVPLALALYNRMVAAGCLPNRATYNVLMDGLCKRGTAVDALKLFDEMLQRG 239

Query: 546 VEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
           + P+     +L+ + C              + +    PD  T       L K GR  EA 
Sbjct: 240 ITPNVKTHTILLSSMCNAGQLKEAENLLNSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAI 299

Query: 594 AVEERCEKINDVPS--LALRGH 613
              ER E +    +  L L+G+
Sbjct: 300 ---ERLEALRRTGTFVLGLKGY 318



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 88/226 (38%), Gaps = 21/226 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHV-ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
           G   D       L+ L + G V E ++RL A  R+    L       +ID   ++ + + 
Sbjct: 274 GCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRRTGTFVLGLKGYSCLIDGLFLAGRYEE 333

Query: 460 ALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
             + + +  ++    P      ++LY+ ++R   +  R  DA    +EM      PD   
Sbjct: 334 GFQCYMEVLEQADFSPD-----IVLYTIMIRGCAEAGRIDDAFAFFDEMKEKRFTPDTFC 388

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LS 565
           ++ L+      GD    + L S + QN V  D     ++I   CK             + 
Sbjct: 389 YNTLLKALCDSGDLDGARSLMSEMAQNNVVLDTNTHTIMIHGLCKKQLVDEAMQVFDGMV 448

Query: 566 NSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALR 611
                P   T  +L   L++  R +EA  +  + E  N+ PSL LR
Sbjct: 449 EVGCHPTVMTYNVLIDGLYRAHRLEEARMLFYKMEVGNN-PSLFLR 493


>gi|15225055|ref|NP_181456.1| lateral organ junction protein [Arabidopsis thaliana]
 gi|75100007|sp|O80958.1|PP194_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g39230, mitochondrial; AltName: Full=Protein LATERAL
           ORGAN JUNCTION; Flags: Precursor
 gi|3402682|gb|AAC28985.1| unknown protein [Arabidopsis thaliana]
 gi|330254554|gb|AEC09648.1| lateral organ junction protein [Arabidopsis thaliana]
          Length = 867

 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 72/146 (49%), Gaps = 1/146 (0%)

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           N  +++   +S  SYN ++  + K G    AVET+R++ + G  PN  T+T +I      
Sbjct: 579 NLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKS 638

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR 280
            ++D ALE+   +  M +K     Y  L++GF        A +L +E+ + G  P  ++ 
Sbjct: 639 NRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVY 698

Query: 281 VAL-ERMQEMGFIQGANEFLREMLPD 305
            +L    + +G +  A +  ++M+ D
Sbjct: 699 NSLISGFRNLGKMDAAIDLYKKMVND 724



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 91/510 (17%), Positives = 204/510 (40%), Gaps = 47/510 (9%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           + +++  +   G++E  +   +E       +S  +   +++ Y K  +  +A++ F ++ 
Sbjct: 313 YTSVIVAFVKEGNMEEAVRVMDEMVGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRME 372

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           +EG  P+   ++VM+E      +++ A+E +  +  +RI  +S     +++G +  E  +
Sbjct: 373 EEGLAPDKVMFSVMVEWFCKNMEMEKAIEFYMRMKSVRIAPSSVLVHTMIQGCLKAESPE 432

Query: 260 EAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIK-NVRYYEDG- 317
            A  + N+  +     G           + G +  A  FL+ M+  K I+ NV +Y +  
Sbjct: 433 AALEIFNDSFESWIAHGFMCNKIFLLFCKQGKVDAATSFLK-MMEQKGIEPNVVFYNNMM 491

Query: 318 ----------------SDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVV 361
                           S+  E   + NN      Y + +  +   K   N  D  +    
Sbjct: 492 LAHCRMKNMDLARSIFSEMLEKGLEPNN----FTYSILIDGFFKNKDEQNAWDVINQMNA 547

Query: 362 SLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH 419
           S     + ++ T +  +CKV +  K+ E   +       +  Y+    +   ++    + 
Sbjct: 548 SNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLI----KEKRYSMSCTSYNSIIDGFVKV 603

Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL 479
           G  +       ++  +G      T   +I+ +  S + D AL+  H+ +++     + KL
Sbjct: 604 GDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSM-----ELKL 658

Query: 480 ML-LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF 538
            L  Y +L+    K      A  +  E+   G++P+V  ++ L+  F   G       L+
Sbjct: 659 DLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKMDAAIDLY 718

Query: 539 SMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKE 586
             +  +G+  D + +  +I    K             L +  ++PD     +L   L K+
Sbjct: 719 KKMVNDGISCDLFTYTTMIDGLLKDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSKK 778

Query: 587 GRRKEAAAVEERCEKINDVPSLALRGHIWA 616
           G+  +A+ + E  +K +  P++ L   + A
Sbjct: 779 GQFLKASKMLEEMKKKDVTPNVLLYSTVIA 808



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 100/226 (44%), Gaps = 21/226 (9%)

Query: 57  SLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQ 116
           S+S    + ++D F+         + DSA+     +  N   S N  T  +L     KS 
Sbjct: 587 SMSCTSYNSIIDGFV------KVGDTDSAVETYREMSENGK-SPNVVTFTSLINGFCKSN 639

Query: 117 R-------NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKL 169
           R        HE+K++   +    +         L+  +    D++   + ++E  +   +
Sbjct: 640 RMDLALEMTHEMKSMELKLDLPAY-------GALIDGFCKKNDMKTAYTLFSELPELGLM 692

Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
            +   YN ++S +   GK   A++ +++++++G   +  TYT MI+ L+  G ++ A ++
Sbjct: 693 PNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNINLASDL 752

Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +S L  + I      +++LV G     +F +A  +L EM+     P
Sbjct: 753 YSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKMLEEMKKKDVTP 798


>gi|473874|gb|AAA17740.1| a membrane-associated salt-inducible protein [Nicotiana tabacum]
          Length = 435

 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 91/185 (49%), Gaps = 10/185 (5%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   DV     ++      G+++   R++ +++ +  R    T   II  +  +     A
Sbjct: 26  GLKPDVVLYNNIIRAFCGMGNMDRALRIVEQMKKERHRPTSRTFMPIIHAFAKAGAIRKA 85

Query: 461 LKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTF 518
           L  F    R+ C P  +      Y++L+  L + KR  D A+ V++EM+ +GI P+ +T+
Sbjct: 86  LDVFDMMRRSGCIPTVQ-----TYNALILGLVE-KRQMDKAVEVVDEMLLAGIRPNERTY 139

Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKEL 578
           + +M  +A  GD     + FS ++  G+E D Y ++ L++A CK     + +  A TKE+
Sbjct: 140 TTIMDGYASLGDTGKAFEYFSRIKDEGLELDVYTYEALLKACCKSGRIESAL--AVTKEM 197

Query: 579 LKKSL 583
             K++
Sbjct: 198 NAKNI 202



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 25/160 (15%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y  +M  YA  G   +A E F ++ DEG   +  TY  +++     G+++SAL V   +
Sbjct: 138 TYTTIMDGYASLGDTGKAFEYFSRIKDEGLELDVYTYEALLKACCKSGRIESALAVTKEM 197

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP--------------GRAM 279
               I R +  Y IL++G+       EA  L+ +MR +G  P                 M
Sbjct: 198 NAKNIPRNTFVYNILIDGWARRSDVWEAADLMQQMRQEGVQPDIHTYTSFVNACCKAGDM 257

Query: 280 RVALERMQEMGFIQGANEFLREM----------LPDKRIK 309
           + A+  +QEM  + G N  L+ +          LP+K +K
Sbjct: 258 QKAMNTIQEMKRV-GLNPMLKPIPLSYTVGHASLPEKALK 296



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/135 (20%), Positives = 68/135 (50%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V + N+++ +   G+++  L    + ++     ++ ++  ++  +AK G   +A++ F  
Sbjct: 32  VLYNNIIRAFCGMGNMDRALRIVEQMKKERHRPTSRTFMPIIHAFAKAGAIRKALDVFDM 91

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G IP  +TY  +I  LV   ++D A+EV   + L  I+   + Y  +++G+  +  
Sbjct: 92  MRRSGCIPTVQTYNALILGLVEKRQMDKAVEVVDEMLLAGIRPNERTYTTIMDGYASLGD 151

Query: 258 FDEAKSLLNEMRDDG 272
             +A    + ++D+G
Sbjct: 152 TGKAFEYFSRIKDEG 166


>gi|356555026|ref|XP_003545840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Glycine max]
          Length = 587

 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 3/156 (1%)

Query: 148 STSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNS 207
           S SGD+E      NE   +  L    +YN ++S+Y K G ++EA+    ++  EG   + 
Sbjct: 207 SKSGDVERAEQLLNEMDVKGVLQDIFTYNTLLSLYCKKGMHYEALSIQNRMEREGINLDI 266

Query: 208 RTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNE 267
            +Y  +I      G++  A+ +FS +        +  Y  L++G+      +EA  +   
Sbjct: 267 VSYNSLIYGFCKEGRMREAMRMFSEIKNATPNHVT--YTTLIDGYCKTNELEEALKMCKL 324

Query: 268 MRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
           M   G +PG       L ++ + G I+ AN+ L EM
Sbjct: 325 MEAKGLYPGVVTYNSILRKLCQDGRIRDANKLLNEM 360



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 90/231 (38%), Gaps = 35/231 (15%)

Query: 392 FFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKL-----------------RS 434
           FF W+   P Y+H +     M+ IL  H H +    ++ K+                   
Sbjct: 60  FFKWLDSIPHYSHSLQCSWAMIHILTEHKHFKTAQHVLEKIAHKDFLSSPSVLSTLVRTH 119

Query: 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSS-LLRTLTKC 493
           D   +    +  ++  Y  SK    A++ F   R     + + K  L   + LL +L K 
Sbjct: 120 DNQEVNSQVLSWLVIHYAKSKMTQDAIQVFEQMR-----LHEVKPHLHACTVLLNSLLKD 174

Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
                   + + M+  G+VP++  ++ L +  +  GD +  ++L + +   GV  D + +
Sbjct: 175 GVTHMVWKIYKRMVQVGVVPNIYIYNCLFHACSKSGDVERAEQLLNEMDVKGVLQDIFTY 234

Query: 554 KVLIQAYCK------YLSNSNLMP------DAATKELLKKSLWKEGRRKEA 592
             L+  YCK       LS  N M       D  +   L     KEGR +EA
Sbjct: 235 NTLLSLYCKKGMHYEALSIQNRMEREGINLDIVSYNSLIYGFCKEGRMREA 285



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 14/122 (11%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++LL    K    ++A+++   M   GI  D+ +++ L+Y F  +G  +   ++FS ++
Sbjct: 234 YNTLLSLYCKKGMHYEALSIQNRMEREGINLDIVSYNSLIYGFCKEGRMREAMRMFSEIK 293

Query: 543 QNGVEPDAYMFKVLIQAY------------CKYLSNSNLMPDAATKELLKKSLWKEGRRK 590
                P+   +  LI  Y            CK +    L P   T   + + L ++GR +
Sbjct: 294 N--ATPNHVTYTTLIDGYCKTNELEEALKMCKLMEAKGLYPGVVTYNSILRKLCQDGRIR 351

Query: 591 EA 592
           +A
Sbjct: 352 DA 353



 Score = 43.9 bits (102), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 10/123 (8%)

Query: 443 TIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL---MLLYSSLLRTLTKCKRDFDA 499
           T   +ID Y  + + + ALK       +C  +    L   ++ Y+S+LR L +  R  DA
Sbjct: 301 TYTTLIDGYCKTNELEEALK-------MCKLMEAKGLYPGVVTYNSILRKLCQDGRIRDA 353

Query: 500 INVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
             +L EM    +  D  T + L+  +   GD K   K  + + + G++PD + +K LI  
Sbjct: 354 NKLLNEMSERKLQADNITCNTLINAYCKIGDLKSALKFKNKMLEAGLKPDPFTYKALIHG 413

Query: 560 YCK 562
           +CK
Sbjct: 414 FCK 416



 Score = 42.7 bits (99), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 55/261 (21%), Positives = 100/261 (38%), Gaps = 8/261 (3%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           L+D +  T+ L  A        +MEA    P       T +++   L +  R  +   L+
Sbjct: 305 LIDGYCKTNELEEAL---KMCKLMEAKGLYPGVV----TYNSILRKLCQDGRIRDANKLL 357

Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
            ++S  K    ++    L+  Y   GDL+  L   N+  +        +Y  ++  + KT
Sbjct: 358 NEMSERKLQADNITCNTLINAYCKIGDLKSALKFKNKMLEAGLKPDPFTYKALIHGFCKT 417

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
            +   A E    ++D G  P+  TY+ +++       +D+ L +        I      Y
Sbjct: 418 NELESAKELMFSMLDAGFTPSYCTYSWIVDGYNKKDNMDAVLALPDEFLSRGICLDVSVY 477

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQ-EMGFIQGANEFLREMLP 304
             L+     VER   A+ L   M   G      +  ++      +G +  A+  L EM  
Sbjct: 478 RALIRSSCKVERIQCAERLFYHMEGKGISGESVIYTSIAYAYWNVGNVSAASSMLEEMAR 537

Query: 305 DKRIKNVRYYEDGSDDDEDEN 325
            + +  V+ Y   S  D +EN
Sbjct: 538 RRLMITVKLYRCFSTSDANEN 558


>gi|414591141|tpg|DAA41712.1| TPA: hypothetical protein ZEAMMB73_063178 [Zea mays]
          Length = 374

 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 93/203 (45%), Gaps = 5/203 (2%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D AL I  A++       +  T + LA  L +  R  E KTL+  +     +   V +  
Sbjct: 160 DDALKIKAAMEKM-GVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTT 218

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE- 201
           L+  +   GD+      + E  ++    S  +YN+++  YAK G   EA E FR+ +++ 
Sbjct: 219 LISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIHGYAKKGSIREA-ERFRKEMEKK 277

Query: 202 GAIPNSRTYTVMIE-HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
           G +P+  TY  ++  H VN GK+D AL++F  +     +     Y  L+ G     R + 
Sbjct: 278 GFVPDVYTYASLVHGHCVN-GKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEA 336

Query: 261 AKSLLNEMRDDGKFPGRAMRVAL 283
           A  L ++M   G  P  ++  AL
Sbjct: 337 AFQLYDDMLKAGLIPDDSLYSAL 359



 Score = 46.2 bits (108), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 10/154 (6%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           ++    + G +E  + L+A ++  G+ L       +ID Y      D ALK       + 
Sbjct: 114 LINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALK-------IK 166

Query: 472 GPISKFKLML---LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
             + K  + L    Y++L   L +  R  +A  +L  MI  G+VP+  T++ L+      
Sbjct: 167 AAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKD 226

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           GD    ++LF  + + G  P    + V+I  Y K
Sbjct: 227 GDMVEARRLFREMAEKGATPSVVTYNVMIHGYAK 260



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 12/98 (12%)

Query: 504 EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY 563
           +EM   G VPDV T++ L++   + G   +  KLF  ++Q G EP+   +  LI    K 
Sbjct: 272 KEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKE 331

Query: 564 ------------LSNSNLMPDAATKELLKKSLWKEGRR 589
                       +  + L+PD +    L  SL  + R+
Sbjct: 332 GRSEAAFQLYDDMLKAGLIPDDSLYSALVGSLHTDNRK 369



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 49/102 (48%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y ++++ + K G+   A      +  +G   N   +  MI+     G +D AL++ +A+
Sbjct: 110 TYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAM 169

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
             M ++     Y  L  G   V R DEAK+LL+ M + G  P
Sbjct: 170 EKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVP 211



 Score = 39.3 bits (90), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y++L+    K     +A  +  EM   G  P V T++ +++ +A +G  +  ++    + 
Sbjct: 216 YTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIHGYAKKGSIREAERFRKEME 275

Query: 543 QNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRK 590
           + G  PD Y +  L+  +C            + +      P+      L   L KEGR +
Sbjct: 276 KKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSE 335

Query: 591 EA 592
            A
Sbjct: 336 AA 337


>gi|413919532|gb|AFW59464.1| hypothetical protein ZEAMMB73_836837 [Zea mays]
          Length = 365

 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/190 (20%), Positives = 83/190 (43%), Gaps = 2/190 (1%)

Query: 88  IMEALKSNPNF--SHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQ 145
           + E   S P    + +  + + L   L +  +  E  +L+ ++        +  +   M 
Sbjct: 161 VHEVYSSAPRLGVTLDTCSFNILVKGLCQYGKFDEAISLLHEMPKQGCQPNATTYSTFMH 220

Query: 146 WYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP 205
           +      ++     +   R++     T  YNI++S   +  +  EA + F+ +  EG  P
Sbjct: 221 FLCQRSQVDKAFELFERMRKQDIAADTVVYNILISGLCRDERVTEAFDLFKSMTSEGCCP 280

Query: 206 NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL 265
           NS TY V+++ L++LGKL  A  +   +    ++ + + Y +L++G    +   +A  +L
Sbjct: 281 NSGTYQVLLDGLISLGKLFEAKSLVCTMSTEGVRPSFQSYKLLIDGLCSDDCVGDAHLVL 340

Query: 266 NEMRDDGKFP 275
            +M   G  P
Sbjct: 341 KQMVGQGFVP 350



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 1/138 (0%)

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           E+V   ++   +    L T S+NI++    + GK  EA+    ++  +G  PN+ TY+  
Sbjct: 159 EVVHEVYSSAPRLGVTLDTCSFNILVKGLCQYGKFDEAISLLHEMPKQGCQPNATTYSTF 218

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           +  L    ++D A E+F  +    I   +  Y IL+ G    ER  EA  L   M  +G 
Sbjct: 219 MHFLCQRSQVDKAFELFERMRKQDIAADTVVYNILISGLCRDERVTEAFDLFKSMTSEGC 278

Query: 274 FPGRAM-RVALERMQEMG 290
            P     +V L+ +  +G
Sbjct: 279 CPNSGTYQVLLDGLISLG 296



 Score = 45.8 bits (107), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 63/125 (50%), Gaps = 4/125 (3%)

Query: 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE-AVETFRQVIDEGAIPNSRTY 210
           D+E +LS     + R    S E +  ++ +Y    ++ + A++T   +      P+++T+
Sbjct: 89  DVEELLSKARTEKLR---FSDEFFYRLIKMYGNVAEHPQKAMDTLFAMPGYNCWPSTKTF 145

Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
             ++  LV   + +   EV+S+ P + +   +  + ILV+G     +FDEA SLL+EM  
Sbjct: 146 NYVLHMLVCKRQYEVVHEVYSSAPRLGVTLDTCSFNILVKGLCQYGKFDEAISLLHEMPK 205

Query: 271 DGKFP 275
            G  P
Sbjct: 206 QGCQP 210



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/125 (21%), Positives = 57/125 (45%), Gaps = 12/125 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           ++ L++ L +  +  +AI++L EM   G  P+  T+S  M+    +       +LF  +R
Sbjct: 180 FNILVKGLCQYGKFDEAISLLHEMPKQGCQPNATTYSTFMHFLCQRSQVDKAFELFERMR 239

Query: 543 QNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRK 590
           +  +  D  ++ +LI   C            K +++    P++ T ++L   L   G+  
Sbjct: 240 KQDIAADTVVYNILISGLCRDERVTEAFDLFKSMTSEGCCPNSGTYQVLLDGLISLGKLF 299

Query: 591 EAAAV 595
           EA ++
Sbjct: 300 EAKSL 304


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 8/177 (4%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           + G+  +      +L ++ + G   L   L+ K+    ++L      +IID        D
Sbjct: 205 ETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLD 264

Query: 459 AALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
            A   F++       I  FK  +++Y++L+R      R  D   +L +MI   I PDV  
Sbjct: 265 NAFNLFNEME-----IKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVA 319

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--YLSNSNLMPD 572
           FS L+  F  +G  +  ++L   + Q G+ PD   +  LI  +CK   L  +N M D
Sbjct: 320 FSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLD 376



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 61/145 (42%)

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L+ D+   K     V F  L+  +   G L        E  QR     T +Y  ++  + 
Sbjct: 304 LLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFC 363

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           K  +  +A      ++ +G  PN RT+ ++I        +D  LE+F  + L  +   + 
Sbjct: 364 KENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTV 423

Query: 244 QYLILVEGFVGVERFDEAKSLLNEM 268
            Y  L++GF  + + + AK L  EM
Sbjct: 424 TYNTLIQGFCELGKLEVAKELFQEM 448



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 63/299 (21%), Positives = 115/299 (38%), Gaps = 63/299 (21%)

Query: 66  LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
           L+D F+    LR A      + I   +  +P+     S +          + NH L    
Sbjct: 323 LIDCFVKEGKLREAEELHKEM-IQRGI--SPDTVTYTSLIDGFCKENQLDKANHML---- 375

Query: 126 GDISSSKFLNVSVNFMN-LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK 184
            D+  SK    ++   N L+  Y  +  ++  L  + +   R  +  T +YN ++  + +
Sbjct: 376 -DLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 434

Query: 185 TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV--------------- 229
            GK   A E F++++     P+  +Y ++++ L + G+ + ALE+               
Sbjct: 435 LGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGI 494

Query: 230 --------------------FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
                               F +LPL  +K   K Y I++ G        EA  L  +M 
Sbjct: 495 YNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKME 554

Query: 270 DDGKFP---------------GRAMRVA--LERMQEMGFIQGAN--EFLREMLPDKRIK 309
           +DG  P               G A + A  +E ++  GF   A+  + + +ML D R+K
Sbjct: 555 EDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVDMLSDGRLK 613



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 106/530 (20%), Positives = 212/530 (40%), Gaps = 63/530 (11%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           ++F  L    + +   +LVL    +   +    +  + +I+++   +  K   A     +
Sbjct: 73  IDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGK 132

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +I  G  P++ T++ +I  L   G++  ALE+   +  M  K T      LV G     +
Sbjct: 133 IIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGK 192

Query: 258 FDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIK--NVRY- 313
             +A  L++ M + G  P        L+ M + G    A E LR+M  +++IK   V+Y 
Sbjct: 193 VSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKM-EERKIKLDAVKYS 251

Query: 314 ------YEDGSDDDEDE--NDDNNSGVR---IAYGVQLKP------WLDPKALANTL--D 354
                  +DGS D+     N+    G +   I Y   ++       W D   L   +   
Sbjct: 252 IIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKR 311

Query: 355 EWSPEVV--SLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
           + +P+VV  S L D  FV   +L        ++ E           Q G + D      +
Sbjct: 312 KITPDVVAFSALIDC-FVKEGKL-------REAEELHKEMI-----QRGISPDTVTYTSL 358

Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
           +    +   ++  + ++  + S G      T  ++I+ Y  +   D  L+ F    +L G
Sbjct: 359 IDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRK-MSLRG 417

Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
            ++     + Y++L++   +  +   A  + +EM+   + PD+ ++  L+      G+ +
Sbjct: 418 VVAD---TVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPE 474

Query: 533 IVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLK 580
              ++F  + ++ +E D  ++ ++I   C              L    + PD  T  ++ 
Sbjct: 475 KALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMI 534

Query: 581 KSLWKEGRRKEAAAVEERCEKINDVP-----SLALRGHIW---AVSSADL 622
             L K+G   EA  +  + E+    P     ++ +R H+    A  SA L
Sbjct: 535 GGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKL 584



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 70/357 (19%), Positives = 133/357 (37%), Gaps = 23/357 (6%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
            F  N+ T   +  V+ KS +      L+  +   K    +V +  ++      G L+  
Sbjct: 207 GFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNA 266

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
            + +NE   +        Y  ++  +   G+  +  +  R +I     P+   ++ +I+ 
Sbjct: 267 FNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDC 326

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
            V  GKL  A E+   +    I   +  Y  L++GF    + D+A  +L+ M   G  P 
Sbjct: 327 FVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPN 386

Query: 277 -RAMRVALERMQEMGFIQGANEFLREM-----LPDKRIKNV---RYYEDGSDDDEDE--N 325
            R   + +    +   I    E  R+M     + D    N     + E G  +   E   
Sbjct: 387 IRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQ 446

Query: 326 DDNNSGVR---IAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF---VWTTRLVCKV 379
           +  +  VR   ++Y + L    D     N   E + E+   +  +K    +    ++   
Sbjct: 447 EMVSRRVRPDIVSYKILLDGLCD-----NGEPEKALEIFEKIEKSKMELDIGIYNIIIHG 501

Query: 380 LRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
           + +    + AW  FC +  + G   DV     M+  L + G +   D L  K+  DG
Sbjct: 502 MCNASKVDDAWDLFCSLPLK-GVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDG 557



 Score = 45.4 bits (106), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 36/176 (20%), Positives = 74/176 (42%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
             +HN  TL  +     + ++     + +G I    +   +V F  L+      G +   
Sbjct: 102 GIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEA 161

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           L   +   +     +  + N +++     GK  +AV    ++++ G  PN  TY  +++ 
Sbjct: 162 LELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKV 221

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           +   G+   A+E+   +   +IK  + +Y I+++G       D A +L NEM   G
Sbjct: 222 MCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 277



 Score = 38.9 bits (89), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 68/172 (39%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           TL+AL   L  + +  +   LI  +  + F    V +  +++    SG   L +    + 
Sbjct: 179 TLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKM 238

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
            +R   L    Y+I++    K G    A   F ++  +G   +   YT +I      G+ 
Sbjct: 239 EERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRW 298

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           D   ++   +   +I      +  L++ FV   +  EA+ L  EM   G  P
Sbjct: 299 DDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISP 350


>gi|384251704|gb|EIE25181.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 905

 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 67/172 (38%), Gaps = 35/172 (20%)

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK-------------- 184
            +  LM      G+  L L T+N  RQ     +  +YN ++ VY K              
Sbjct: 247 TYTALMNVCIKCGNCPLALDTYNHMRQDGACPNVVTYNTLIDVYGKMGLWEQGIKVLTLM 306

Query: 185 ---------------------TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
                                 G+  EA+  +++++DEG  PN+ TY  +I      G+L
Sbjct: 307 KTEGVEPVLRTYNTLIIACNMCGQPREAMAVYKRMLDEGYSPNATTYNALISAYGKAGQL 366

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           D  +EVF  +     +R+   Y  L+       +++ A  L NEM  +G  P
Sbjct: 367 DKVMEVFQEMVHKGCERSVITYSSLISACEKAGQWELALELFNEMAGEGCIP 418



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 83/183 (45%), Gaps = 7/183 (3%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
            +S N +T +AL +   K+ +  ++  +  ++         + + +L+     +G  EL 
Sbjct: 345 GYSPNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVITYSSLISACEKAGQWELA 404

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           L  +NE      + +T +YN +++  A+  +  +A E F Q+   G  P+  T+T +I  
Sbjct: 405 LELFNEMAGEGCIPNTVTYNSLITACAQGAQWEKASEVFEQMQKGGCTPDVVTFTALISS 464

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE-----GFVGVERFDEAKSLLNEMRDD 271
               G+   AL  +  + L R K  +  +  +++     G +  +R  +A +L  +  +D
Sbjct: 465 YEKGGQWRRALGAYEQMRLQRCKPDAIVFNAIIDTLWETGVIWAQR--KALALFQQAVED 522

Query: 272 GKF 274
           G F
Sbjct: 523 GHF 525



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 66/160 (41%), Gaps = 20/160 (12%)

Query: 442 STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKF--KLMLLYSSLLRTLTKCKRDFDA 499
           +T   +I  YG + + D  ++ F +       + K   + ++ YSSL+    K  +   A
Sbjct: 351 TTYNALISAYGKAGQLDKVMEVFQEM------VHKGCERSVITYSSLISACEKAGQWELA 404

Query: 500 INVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
           + +  EM   G +P+  T++ L+   A     +   ++F  +++ G  PD   F  LI +
Sbjct: 405 LELFNEMAGEGCIPNTVTYNSLITACAQGAQWEKASEVFEQMQKGGCTPDVVTFTALISS 464

Query: 560 YCK------------YLSNSNLMPDAATKELLKKSLWKEG 587
           Y K             +      PDA     +  +LW+ G
Sbjct: 465 YEKGGQWRRALGAYEQMRLQRCKPDAIVFNAIIDTLWETG 504



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 4/126 (3%)

Query: 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT 211
           D++  +    E R R    +  +Y  +M+V  K G    A++T+  +  +GA PN  TY 
Sbjct: 225 DVDRAMDLAKEMRVRNIERNVHTYTALMNVCIKCGNCPLALDTYNHMRQDGACPNVVTYN 284

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY--LILVEGFVGVERFDEAKSLLNEMR 269
            +I+    +G  +  ++V + +    ++   + Y  LI+     G  R  EA ++   M 
Sbjct: 285 TLIDVYGKMGLWEQGIKVLTLMKTEGVEPVLRTYNTLIIACNMCGQPR--EAMAVYKRML 342

Query: 270 DDGKFP 275
           D+G  P
Sbjct: 343 DEGYSP 348


>gi|356564530|ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g11690-like [Glycine max]
          Length = 556

 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 75/170 (44%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           NQ T   L     K     E   +  +++ S  +  +  +  L+  Y   G ++     +
Sbjct: 227 NQHTYSVLMNGFFKQGLQREGFQMYENMNRSGIVPNAYAYNCLISEYCNDGMVDKAFKVF 286

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
            E R++       +YNI++    +  K  EAV+   +V   G  PN  TY ++I    ++
Sbjct: 287 AEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDV 346

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
           GK+D+A+ +F+ L    +  T   Y  L+ G+  VE    A  L+ EM +
Sbjct: 347 GKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEE 396



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 90/461 (19%), Positives = 180/461 (39%), Gaps = 69/461 (14%)

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
           T  Y+ +++ Y  +    +A+     +I EG  P S T+  ++  L+     D A  +F+
Sbjct: 89  TPLYDAIVNAYVHSHSTDQALTFLHHMIHEGHAPLSNTFNNLLCLLIRSNYFDKAWWIFN 148

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMG 290
            L   ++   +  + I++ G      F     LL  + + G  P   +   L +   + G
Sbjct: 149 VLK-SKVVLNAYSFGIMITGCCEAGYFVRVFRLLAVLEEFGLSPNVVIYTTLIDGCCKNG 207

Query: 291 FIQGANEFLREM-----LPDKRIKNV---RYYEDGSDDDEDE--NDDNNSGV---RIAYG 337
            +  A     +M     +P++   +V    +++ G   +  +   + N SG+     AY 
Sbjct: 208 DVMLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQMYENMNRSGIVPNAYAYN 267

Query: 338 VQLKPWLD---------------PKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRH 382
             +  + +                K +A  +  ++  +  L    KF    +LV KV + 
Sbjct: 268 CLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKV 327

Query: 383 FKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFS 442
             SP                T+++     ++      G ++   RL  +L+S G+     
Sbjct: 328 GLSPNIV-------------TYNI-----LINGFCDVGKMDTAVRLFNQLKSSGLSPTLV 369

Query: 443 TIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINV 502
           T   +I  Y   +    AL    +    C   SK    +L  +  R L    +  +  ++
Sbjct: 370 TYNTLIAGYSKVENLAGALDLVKEMEERCIARSKVTYTILIDAFAR-LNYTDKACEMHSL 428

Query: 503 LEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
           +E+   SG+VPDV T+S L++   + G+ K   K F  + +  ++P++ ++  +I  YCK
Sbjct: 429 MEK---SGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMIHGYCK 485

Query: 563 YLS------------NSNLMPDAAT-----KELLKKSLWKE 586
             S            +S ++P+ A+       L +   WKE
Sbjct: 486 EGSSYRALRLLNEMVHSGMVPNVASFCSTMGLLCRDEKWKE 526



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 65/138 (47%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           V +  L+     +GD+ L  + + +  +   + +  +Y+++M+ + K G   E  + +  
Sbjct: 194 VIYTTLIDGCCKNGDVMLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQMYEN 253

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G +PN+  Y  +I    N G +D A +VF+ +    I      Y IL+ G    ++
Sbjct: 254 MNRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKK 313

Query: 258 FDEAKSLLNEMRDDGKFP 275
           F EA  L++++   G  P
Sbjct: 314 FGEAVKLVHKVNKVGLSP 331



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 64/155 (41%)

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           L   + SS      V +  L+  YS   +L   L    E  +R    S  +Y I++  +A
Sbjct: 355 LFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIARSKVTYTILIDAFA 414

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           +     +A E    +   G +P+  TY+V+I      G +  A + F +L  M ++  S 
Sbjct: 415 RLNYTDKACEMHSLMEKSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPNSV 474

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA 278
            Y  ++ G+        A  LLNEM   G  P  A
Sbjct: 475 IYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVA 509


>gi|145334827|ref|NP_001078759.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635742|sp|Q9LVD3.2|PP434_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g57250, mitochondrial; Flags: Precursor
 gi|332009488|gb|AED96871.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 971

 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 83/191 (43%)

Query: 85  ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
           AL   E+   +     N  T   L + L +  +  E++ L+  +    F    V + N +
Sbjct: 190 ALGFFESAVDSGVLVPNLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWI 249

Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204
             Y   G L   L    E  ++       SY+I++   +K G   EA+    ++I EG  
Sbjct: 250 HGYFKGGALVDALMQDREMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVE 309

Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL 264
           PN  TYT +I  L  +GKL+ A  +F+ +  + I+     Y+ L++G       + A S+
Sbjct: 310 PNLITYTAIIRGLCKMGKLEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAFSM 369

Query: 265 LNEMRDDGKFP 275
           L +M   G  P
Sbjct: 370 LGDMEQRGIQP 380



 Score = 45.4 bits (106), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 46/94 (48%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           YN ++  Y K G+  +A+    + +     P++ T + MI+     G ++ AL VF+   
Sbjct: 763 YNSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKKGDMEEALSVFTEFK 822

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
              I      +L L++GF    R +EA+ LL EM
Sbjct: 823 DKNISADFFGFLFLIKGFCTKGRMEEARGLLREM 856



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 92/233 (39%), Gaps = 20/233 (8%)

Query: 377 CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
           CK+ +    PE A  FF           ++     +++ L + G V+ V  L+ +L  +G
Sbjct: 182 CKIGK----PELALGFFESAVDSGVLVPNLVTYTTLVSALCQLGKVDEVRDLVRRLEDEG 237

Query: 437 MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
                      I  Y    K  A + A   DR +       + ++ YS L+  L+K    
Sbjct: 238 FEFDCVFYSNWIHGY---FKGGALVDALMQDREMVEK-GMNRDVVSYSILIDGLSKEGNV 293

Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
            +A+ +L +MI  G+ P++ T++ ++      G  +    LF+ +   G+E D +++  L
Sbjct: 294 EEALGLLGKMIKEGVEPNLITYTAIIRGLCKMGKLEEAFVLFNRILSVGIEVDEFLYVTL 353

Query: 557 IQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
           I   C+             +    + P   T   +   L   GR  EA  V +
Sbjct: 354 IDGICRKGNLNRAFSMLGDMEQRGIQPSILTYNTVINGLCMAGRVSEADEVSK 406



 Score = 42.7 bits (99), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 49/267 (18%), Positives = 96/267 (35%), Gaps = 41/267 (15%)

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           I+   L    N + AL ++  +        N  T  A+   L K  +  E   L   I S
Sbjct: 282 ILIDGLSKEGNVEEALGLLGKM-IKEGVEPNLITYTAIIRGLCKMGKLEEAFVLFNRILS 340

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
                    ++ L+      G+L    S   +  QR    S  +YN V++     G+  E
Sbjct: 341 VGIEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSILTYNTVINGLCMAGRVSE 400

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV--------------------- 229
           A E     + +G + +  TY+ +++  + +  +D+ LE+                     
Sbjct: 401 ADE-----VSKGVVGDVITYSTLLDSYIKVQNIDAVLEIRRRFLEAKIPMDLVMCNILLK 455

Query: 230 --------------FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
                         + A+P M +   +  Y  +++G+    + +EA  + NE+R      
Sbjct: 456 AFLLMGAYGEADALYRAMPEMDLTPDTATYATMIKGYCKTGQIEEALEMFNELRKSSVSA 515

Query: 276 GRAMRVALERMQEMGFIQGANEFLREM 302
                  ++ + + G +  A E L E+
Sbjct: 516 AVCYNRIIDALCKKGMLDTATEVLIEL 542



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 12/122 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y  L+  L K     DA  +L+ M+  G+VP++  ++ ++  +   G  +   ++ S   
Sbjct: 728 YGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKM 787

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
              V PDA+    +I+ YCK               + N+  D      L K    +GR +
Sbjct: 788 MGRVTPDAFTVSSMIKGYCKKGDMEEALSVFTEFKDKNISADFFGFLFLIKGFCTKGRME 847

Query: 591 EA 592
           EA
Sbjct: 848 EA 849



 Score = 40.4 bits (93), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 35/175 (20%), Positives = 74/175 (42%), Gaps = 5/175 (2%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
           ++ + +L+      G L   L  ++       + S  +Y I++    K G   +A +   
Sbjct: 690 TITYNSLINGLCQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLD 749

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
            ++ +G +PN   Y  +++    LG+ + A+ V S   + R+   +     +++G+    
Sbjct: 750 SMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKKG 809

Query: 257 RFDEAKSLLNEMRD---DGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRI 308
             +EA S+  E +D      F G      ++     G ++ A   LREML  + +
Sbjct: 810 DMEEALSVFTEFKDKNISADFFG--FLFLIKGFCTKGRMEEARGLLREMLVSESV 862



 Score = 38.9 bits (89), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 75/172 (43%), Gaps = 10/172 (5%)

Query: 393 FCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYG 452
            C  A   G T +      ++  L + G +    RL   L + G+     T  ++ID   
Sbjct: 677 LCSFAKSRGVTLNTITYNSLINGLCQQGCLVEALRLFDSLENIGLVPSEVTYGILID--N 734

Query: 453 ISKKADAALKAFHD-DRTLCGPISKFKL--MLLYSSLLRTLTKCKRDFDAINVLEEMIFS 509
           + K+       F D ++ L   +SK  +  +++Y+S++    K  +  DA+ V+   +  
Sbjct: 735 LCKEG-----LFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMG 789

Query: 510 GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
            + PD  T S ++  +  +GD +    +F+  +   +  D + F  LI+ +C
Sbjct: 790 RVTPDAFTVSSMIKGYCKKGDMEEALSVFTEFKDKNISADFFGFLFLIKGFC 841



 Score = 38.9 bits (89), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 12/125 (9%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           Y+SL+  L +     +A+ + + +   G+VP   T+  L+ +   +G     +KL   + 
Sbjct: 693 YNSLINGLCQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMV 752

Query: 543 QNGVEPDAYMFKVLIQAYCKYLSNSNLM------------PDAATKELLKKSLWKEGRRK 590
             G+ P+  ++  ++  YCK     + M            PDA T   + K   K+G  +
Sbjct: 753 SKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKKGDME 812

Query: 591 EAAAV 595
           EA +V
Sbjct: 813 EALSV 817


>gi|21537126|gb|AAM61467.1| unknown [Arabidopsis thaliana]
          Length = 766

 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 95/200 (47%), Gaps = 4/200 (2%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + HA  S  N + A+   E +      S +    +AL + L + +R+H+   ++  +   
Sbjct: 482 LIHACCSVSNVEKAMYWYEKMLE-AGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEG 540

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
            F    + +  L+  +    + E V     +  +  K   + +YN ++S + K  K+FE+
Sbjct: 541 GFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLISFFGKH-KDFES 599

Query: 192 VE-TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM-RIKRTSKQYLILV 249
           VE    Q+ ++G  P   TY  +I+   ++G+LD AL++F  + L  ++   +  Y IL+
Sbjct: 600 VERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILI 659

Query: 250 EGFVGVERFDEAKSLLNEMR 269
             F  +  F +A SL  EM+
Sbjct: 660 NAFSKLGNFGQALSLKEEMK 679



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 75/161 (46%), Gaps = 5/161 (3%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           + G   D      +++   +H   E V+R++ ++R DG+    +T   +ID Y    + D
Sbjct: 574 KEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELD 633

Query: 459 AALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
            ALK F D     G  SK     ++Y+ L+   +K      A+++ EEM    + P+V+T
Sbjct: 634 EALKLFKD----MGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVET 689

Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
           ++ L      +   + + KL   + +   EP+    ++L++
Sbjct: 690 YNALFKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILME 730



 Score = 43.5 bits (101), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 50/93 (53%), Gaps = 5/93 (5%)

Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
           C P +K     +Y +L+  L + +RD DAI V+E++   G   D+  ++ L+  F  + +
Sbjct: 507 CSPDAK-----IYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNN 561

Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY 563
            + V ++ + + + G +PD+  +  LI  + K+
Sbjct: 562 AEKVYEMLTDMEKEGKKPDSITYNTLISFFGKH 594


>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 754

 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 104/559 (18%), Positives = 205/559 (36%), Gaps = 54/559 (9%)

Query: 13  SKAFTQLQTRSFVRAPF--TNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPF 70
           ++ F ++ T    R+ F  T  +  Y R  Q   S+ L  R        S+L        
Sbjct: 162 TEIFEEMPTHGVPRSVFSYTALINSYGRHGQYEVSLELLERMKKEKVTPSILTYNT---- 217

Query: 71  IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
           ++    R   N +  LS+   ++ +     +  T + L    A      E + +   ++ 
Sbjct: 218 VINSCARGGLNWEGLLSLFAEMR-HEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNE 276

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
              +     + NL++ +     LE V     E      L    SYN+++  YA  G    
Sbjct: 277 GGMVPDITTYRNLVETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRH 336

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A+  FRQ+ +   +PN+ TY++++      G+ D   E+F  + +   +     Y +L+E
Sbjct: 337 AMGVFRQMQEARCVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIE 396

Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIK 309
            F     F E  +L ++M ++   P       L     + G  + A + L  M     + 
Sbjct: 397 VFGEGGYFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVP 456

Query: 310 NVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF 369
           + + Y               +GV  AYG Q   + +   + NT++E        +     
Sbjct: 457 STKAY---------------TGVIEAYG-QAASYEEALVMFNTMNE--------MGSKPT 492

Query: 370 VWTTRLVCKVLRH---FKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVD 426
           V T   +  +      +K  E       W   + G   D  +   ++    + G  E   
Sbjct: 493 VETYNSLINMFARGGLYKESEA----IMWKMGESGVARDRDSFNGVIEGYRQGGQFEEAI 548

Query: 427 RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSL 486
           +   +L     +    T   ++  Y  +   D + + F + R   G +     ++ Y  +
Sbjct: 549 KTYVELEKARFQPDERTFEAVLSVYCTAGLVDESEEQFREIRA-SGILPS---VMCYCMM 604

Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE------KIVQKLFSM 540
           +    +  R  DA  VL+EM+ +  V ++    G M    ++GD       ++V+ +F  
Sbjct: 605 IAVYARSNRWDDAYEVLDEMV-TNKVSNIHQVVGKM----MKGDYDDYSNWQMVEYVFDK 659

Query: 541 VRQNGVEPDAYMFKVLIQA 559
           +   G       +  L++A
Sbjct: 660 LNSEGCGLGMRFYNTLLEA 678



 Score = 44.7 bits (104), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 92/211 (43%), Gaps = 23/211 (10%)

Query: 428 LIAKLRSDGMR---LPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS 484
           L A++R +G++   + ++T+       G+  +A+   +  ++     G +     +  Y 
Sbjct: 235 LFAEMRHEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEG----GMVPD---ITTYR 287

Query: 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544
           +L+ T  K  +      +L+EM  SG +PD+ +++ L+  +A +GD +    +F  +++ 
Sbjct: 288 NLVETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEA 347

Query: 545 GVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
              P+A  + +L+  Y  +            +  SN  PD  T  +L +   + G  KE 
Sbjct: 348 RCVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEV 407

Query: 593 AAVEERCEKINDVPSLA-LRGHIWAVSSADL 622
             +     + N  P++    G I+A     L
Sbjct: 408 VTLFHDMVEENVEPNMGTYEGLIYACGKGGL 438



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 39/212 (18%), Positives = 100/212 (47%), Gaps = 23/212 (10%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           ++++L R G +E    +  ++ + G+     +   +I+ YG   + + +L+       L 
Sbjct: 148 IISLLGREGLLEKSTEIFEEMPTHGVPRSVFSYTALINSYGRHGQYEVSLE-------LL 200

Query: 472 GPISKFKL---MLLYSSLLRTLTKCKRDFDAI-NVLEEMIFSGIVPDVQTFSGLMYHFAL 527
             + K K+   +L Y++++ +  +   +++ + ++  EM   GI PD+ T++ L+   A 
Sbjct: 201 ERMKKEKVTPSILTYNTVINSCARGGLNWEGLLSLFAEMRHEGIQPDIITYNTLLNACAN 260

Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAAT 575
           +G     + +F  + + G+ PD   ++ L++ + K             + +S  +PD ++
Sbjct: 261 RGLGDEAEMVFRTMNEGGMVPDITTYRNLVETFGKLNKLEKVSELLKEMESSGNLPDISS 320

Query: 576 KELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
             +L ++   +G  + A  V  + ++   VP+
Sbjct: 321 YNVLLEAYASKGDIRHAMGVFRQMQEARCVPN 352


>gi|326490553|dbj|BAJ84940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 856

 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 106/284 (37%), Gaps = 34/284 (11%)

Query: 355 EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT 414
           +W P    +L   +         +VL+       A  FF W+  QPG+ HD +    M+ 
Sbjct: 312 KWGPMTEHVLDGLRCKIDAFQANQVLKLLHDHNIALGFFHWLKRQPGFKHDGHTYTTMIG 371

Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-------- 466
           IL +      + +L+ ++ S   +    T   II  YG +     A+K F +        
Sbjct: 372 ILGQAKQFGTMRKLLDEMSSVNCKPTVVTYNRIIHAYGRANYLREAVKVFEEMEGAGYQP 431

Query: 467 DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
           DR            + Y +L+    K      A+++   M   G+ PD  T+S ++    
Sbjct: 432 DR------------VTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLG 479

Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI--QAYCKYLSN----------SNLMPDAA 574
             G      KLF  +  NG  P+   + ++I  QA  +   N          +   PD  
Sbjct: 480 KGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRPDKI 539

Query: 575 TKELLKKSLWKEGRRKEAAAV--EERCEKINDVPSLALRGHIWA 616
           T  ++ + L   G   EA AV  E R +   D P   L   +W 
Sbjct: 540 TYSIVMEVLGHCGHLDEAEAVFLEMRRDWAPDEPVYGLLVDLWG 583



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/240 (19%), Positives = 97/240 (40%), Gaps = 35/240 (14%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           +D F     L+   + + AL     LK  P F H+  T   +  +L ++++   ++ L+ 
Sbjct: 328 IDAFQANQVLKLLHDHNIALGFFHWLKRQPGFKHDGHTYTTMIGILGQAKQFGTMRKLLD 387

Query: 127 DISS-----------------------------------SKFLNVSVNFMNLMQWYSTSG 151
           ++SS                                   + +    V +  L+  ++ SG
Sbjct: 388 EMSSVNCKPTVVTYNRIIHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSG 447

Query: 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT 211
            LE+ +  +   ++      T +Y+ +++   K G+   A + F ++ID G  PN  TY 
Sbjct: 448 YLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYN 507

Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
           ++I         D+ ++++  + +   +     Y I++E        DEA+++  EMR D
Sbjct: 508 IIIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDEAEAVFLEMRRD 567



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 15/127 (11%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI-RLIIDFYGISKKADA 459
           G+  D      ++ +L   GH++  + +  ++R D    P   +  L++D +G +   D 
Sbjct: 533 GFRPDKITYSIVMEVLGHCGHLDEAEAVFLEMRRD--WAPDEPVYGLLVDLWGKAGNVDK 590

Query: 460 ALKAFH----DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
           AL  +H    D      P          +SLL    K  R  DA  VL+ M+  G+VP +
Sbjct: 591 ALGWYHAMLQDGLQPNVPTC--------NSLLSAFLKLNRFQDAYGVLQNMLAQGLVPSL 642

Query: 516 QTFSGLM 522
           QT++ L+
Sbjct: 643 QTYTLLL 649


>gi|115475155|ref|NP_001061174.1| Os08g0191900 [Oryza sativa Japonica Group]
 gi|40253652|dbj|BAD05595.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623143|dbj|BAF23088.1| Os08g0191900 [Oryza sativa Japonica Group]
 gi|125602452|gb|EAZ41777.1| hypothetical protein OsJ_26318 [Oryza sativa Japonica Group]
 gi|215695295|dbj|BAG90486.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215704436|dbj|BAG93870.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 609

 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 115/277 (41%), Gaps = 26/277 (9%)

Query: 1   MFSKRFLPAVILSKAFTQLQTRSFVRAPFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSS 60
           M  K + P+VI   A  +    ++ RA    K     RR Q            S    S+
Sbjct: 168 MNKKGYKPSVISQTALME----AYGRAKQYRKAEAVFRRMQ-----------TSGPEPSA 212

Query: 61  LLNDRLLDPFIVTHALRSAPNADSALSIMEAL--KSNPNFSHNQSTLHALATVLAKSQRN 118
           +    +L  F+     + A       +I E L  +   +F  +Q   H +  +  K+   
Sbjct: 213 VTYQIILKSFVEGDKYKEAE------AIFEDLLNEKRASFKPDQKMFHMMIYMYKKAGDY 266

Query: 119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV 178
            + + L   +S       +V F +LM + +   + + V S +++ ++ A      SY+++
Sbjct: 267 AQARKLFAQMSERGIPLSTVTFNSLMSFET---NYKEVSSIYDQMQRTALKPDVVSYSLL 323

Query: 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI 238
           +  Y K  +  EA+  F +++D G  P  ++Y ++I+     G ++ A  VF A+   R+
Sbjct: 324 IKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDAFAISGLVEEAHTVFKAMRRHRV 383

Query: 239 KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           +     Y  +V  +V     D A+     +++DG  P
Sbjct: 384 EPDLCSYTTMVLAYVNASDMDGAEKFFRRIKEDGLKP 420



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 7/149 (4%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           M+ +  + G      +L A++   G+ L   T   ++ F    K+  +        RT  
Sbjct: 256 MIYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNSLMSFETNYKEVSSIYDQMQ--RTAL 313

Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
            P      ++ YS L++   K +R+ +A+ V EEM+ +G+ P  ++++ L+  FA+ G  
Sbjct: 314 KPD-----VVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDAFAISGLV 368

Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
           +    +F  +R++ VEPD   +  ++ AY
Sbjct: 369 EEAHTVFKAMRRHRVEPDLCSYTTMVLAY 397



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 84/198 (42%), Gaps = 16/198 (8%)

Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
           ++T   + G     +R++  +   G +    +   +++ YG +K+   A   F   +T  
Sbjct: 148 LVTAYGKLGDFSRAERVLKYMNKKGYKPSVISQTALMEAYGRAKQYRKAEAVFRRMQT-S 206

Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMI---FSGIVPDVQTFSGLMYHFALQ 528
           GP       + Y  +L++  +  +  +A  + E+++    +   PD + F  ++Y +   
Sbjct: 207 GPEPS---AVTYQIILKSFVEGDKYKEAEAIFEDLLNEKRASFKPDQKMFHMMIYMYKKA 263

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY---------LSNSNLMPDAATKELL 579
           GD    +KLF+ + + G+      F  L+     Y         +  + L PD  +  LL
Sbjct: 264 GDYAQARKLFAQMSERGIPLSTVTFNSLMSFETNYKEVSSIYDQMQRTALKPDVVSYSLL 323

Query: 580 KKSLWKEGRRKEAAAVEE 597
            K+  K  R +EA AV E
Sbjct: 324 IKAYGKARREEEALAVFE 341


>gi|242043154|ref|XP_002459448.1| hypothetical protein SORBIDRAFT_02g004810 [Sorghum bicolor]
 gi|241922825|gb|EER95969.1| hypothetical protein SORBIDRAFT_02g004810 [Sorghum bicolor]
          Length = 316

 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 78/175 (44%)

Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
           N  T   L   L KS    E + +   +  S     +  + +L+  Y+T G+L  + +  
Sbjct: 9   NVVTYSMLINCLCKSGLRAEAREIFNSMIQSGQKPNAATYRSLLHGYATEGNLVDMNNVK 68

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           +   Q         +NI +  Y K G+  EA  TF ++   G +P+  TYT +I+ L  +
Sbjct: 69  DLMVQNGMRPDRHVFNIEIYAYCKCGRLDEASLTFNKMQQLGFMPDIVTYTTVIDGLCKI 128

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           G+LD A+  F  +    +      +  L+ GF    ++++A+ L  EM D G  P
Sbjct: 129 GRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPP 183



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 14/134 (10%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           YS L+  L K     +A  +   MI SG  P+  T+  L++ +A +G+   +  +  ++ 
Sbjct: 13  YSMLINCLCKSGLRAEAREIFNSMIQSGQKPNAATYRSLLHGYATEGNLVDMNNVKDLMV 72

Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
           QNG+ PD ++F + I AYCK             +     MPD  T   +   L K GR  
Sbjct: 73  QNGMRPDRHVFNIEIYAYCKCGRLDEASLTFNKMQQLGFMPDIVTYTTVIDGLCKIGRLD 132

Query: 591 EAAAVEERCEKIND 604
           +  A+   C+ I+D
Sbjct: 133 D--AMSRFCQMIDD 144



 Score = 46.6 bits (109), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 8/182 (4%)

Query: 96  PNFSHNQSTLHALATV--LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
           PN +  +S LH  AT   L       +L    G        N+ +        Y   G L
Sbjct: 43  PNAATYRSLLHGYATEGNLVDMNNVKDLMVQNGMRPDRHVFNIEI------YAYCKCGRL 96

Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
           +    T+N+ +Q   +    +Y  V+    K G+  +A+  F Q+ID+G  PN  T+T +
Sbjct: 97  DEASLTFNKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTL 156

Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
           I      GK + A E+F  +    I      +  +++      +  EA+ L + M   G 
Sbjct: 157 IHGFSMYGKWEKAEELFYEMMDRGIPPNVNTFNSMIDRLFKEGKVTEARKLFDLMPRAGA 216

Query: 274 FP 275
            P
Sbjct: 217 KP 218



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 4/142 (2%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           ++  ++  ++  GK  +A E F +++D G  PN  T+  MI+ L   GK+  A ++F  +
Sbjct: 152 TFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPNVNTFNSMIDRLFKEGKVTEARKLFDLM 211

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA-MRVALERMQEMGF- 291
           P    K     Y  ++ G+       E   LL++M   G  P    +   L+ M  +G  
Sbjct: 212 PRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPNAVNLNTLLDGMLSIGLK 271

Query: 292 --IQGANEFLREMLPDKRIKNV 311
             +      +     D RI+++
Sbjct: 272 PNVDTCKTLIDSCCEDDRIEDI 293



 Score = 42.7 bits (99), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 45/78 (57%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ Y++++  L K  R  DA++   +MI  G+ P++ TF+ L++ F++ G  +  ++LF 
Sbjct: 115 IVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFY 174

Query: 540 MVRQNGVEPDAYMFKVLI 557
            +   G+ P+   F  +I
Sbjct: 175 EMMDRGIPPNVNTFNSMI 192


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 79/168 (47%), Gaps = 1/168 (0%)

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
           +F  L+  Y  +  ++     ++E   R  +  T SYN ++S   +  +  EA E F+ +
Sbjct: 373 SFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDM 432

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
              G  PN  TY+++++ L   G LD A+ +F A+    +K     Y I+++G     +F
Sbjct: 433 HSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKF 492

Query: 259 DEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPD 305
            +A+ L  E+   G  P        ++ + + G +  A++  R+M  D
Sbjct: 493 KDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEKD 540



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 78/395 (19%), Positives = 158/395 (40%), Gaps = 38/395 (9%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           S  I+++ + +            ++I  G  PN  T++ +I      GK+  A+E+F  +
Sbjct: 128 SLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVM 187

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFI 292
                K     Y I+++G   V +  E   LL  M+  G  P   +    ++R+ +   +
Sbjct: 188 VARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLV 247

Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQ-LKPWLDPKALAN 351
             A     +M     +  V  Y                   + +G++ L  W +   L N
Sbjct: 248 NEAVHIFCKMKGTGILPTVVTYTS-----------------LIHGLRNLGRWKEAFGLLN 290

Query: 352 TLDEWS--PEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYAL 409
            +   +  P++V+      F     ++CK     +   +          + G   DV   
Sbjct: 291 EMKGGNIMPDLVA------FSVLIDIMCK-----EGEVSEARVILKTMTEMGVEPDVATY 339

Query: 410 EKMLTILARHGHVELVDRLIAKLRSDGMRLP-FSTIRLIIDFYGISKKADAALKAFHDDR 468
             ++        V    ++   + S G R+P   +  ++++ Y  +K+ D A + F D+ 
Sbjct: 340 NTLMNGYCLRMEVVEARKVFEVMISKG-RMPDVFSFSILVNGYCKAKRIDEAKQLF-DEM 397

Query: 469 TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528
           T  G I      + Y++L+  L + +R  +A  + ++M  +G  P++ T+S L+   + Q
Sbjct: 398 THRGLIPD---TVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQ 454

Query: 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY 563
           G       LF  +  +G++PD   + ++I   CKY
Sbjct: 455 GYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKY 489



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 70/166 (42%), Gaps = 1/166 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           + F  L+  +   G +   +  ++    R    +  SY+I++    + GK  E ++    
Sbjct: 162 ITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEH 221

Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
           +   G  P+   Y  +++ L     ++ A+ +F  +    I  T   Y  L+ G   + R
Sbjct: 222 MKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGR 281

Query: 258 FDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREM 302
           + EA  LLNEM+     P   A  V ++ M + G +  A   L+ M
Sbjct: 282 WKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTM 327



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 12/125 (9%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           ++ +S L+  + K     +A  +L+ M   G+ PDV T++ LM  + L+ +    +K+F 
Sbjct: 301 LVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFE 360

Query: 540 MVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEG 587
           ++   G  PD + F +L+  YCK             +++  L+PD  +   L   L +  
Sbjct: 361 VMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQAR 420

Query: 588 RRKEA 592
           R  EA
Sbjct: 421 RPLEA 425



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 20/202 (9%)

Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
           D+ A   ++ I+ + G V     ++  +   G+    +T   +++ Y +  +   A K F
Sbjct: 300 DLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVF 359

Query: 465 HDDRTLCGPISKFKL--MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
                    ISK ++  +  +S L+    K KR  +A  + +EM   G++PD  +++ L+
Sbjct: 360 EV------MISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLI 413

Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI-----QAYC-------KYLSNSNLM 570
                       ++LF  +  NG  P+   + +L+     Q Y        + + NS L 
Sbjct: 414 SGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLK 473

Query: 571 PDAATKELLKKSLWKEGRRKEA 592
           PD  T  ++   + K G+ K+A
Sbjct: 474 PDLVTYNIMIDGMCKYGKFKDA 495



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 81/204 (39%), Gaps = 16/204 (7%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           GY  +V++   ++  L R G    V +L+  ++  G          I+D     +  + A
Sbjct: 191 GYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEA 250

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           +  F   +           ++ Y+SL+  L    R  +A  +L EM    I+PD+  FS 
Sbjct: 251 VHIFCKMKG----TGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSV 306

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSN 568
           L+     +G+    + +   + + GVEPD   +  L+  YC            + + +  
Sbjct: 307 LIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKG 366

Query: 569 LMPDAATKELLKKSLWKEGRRKEA 592
            MPD  +  +L     K  R  EA
Sbjct: 367 RMPDVFSFSILVNGYCKAKRIDEA 390



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 22/224 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G +HDV +L  ++    R  HV+    ++ K+   G+     T   +I+ + I  K   A
Sbjct: 121 GISHDVLSLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRA 180

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           ++ F D     G          YS +++ L +  +  + I +LE M   G  PDV  ++ 
Sbjct: 181 IELF-DVMVARGYKPNVH---SYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNT 236

Query: 521 LMYHFALQGDEKIVQK---LFSMVRQNGVEPDAYMFKVLIQ------------AYCKYLS 565
           ++        +++V +   +F  ++  G+ P    +  LI                  + 
Sbjct: 237 IVDRLC---KDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMK 293

Query: 566 NSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA 609
             N+MPD     +L   + KEG   EA  + +   ++   P +A
Sbjct: 294 GGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVA 337



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 49/105 (46%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y+I++   +K G   +A+  FR + + G  P+  TY +MI+ +   GK   A E+F+ L
Sbjct: 443 TYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAEL 502

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA 278
            +  ++  +      ++G       DEA     +M  D   P + 
Sbjct: 503 SVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEKDDCSPAQG 547



 Score = 43.1 bits (100), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 34/164 (20%), Positives = 67/164 (40%)

Query: 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS 171
           L K +  +E   +   +  +  L   V + +L+      G  +      NE +    +  
Sbjct: 241 LCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPD 300

Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
             ++++++ +  K G+  EA    + + + G  P+  TY  ++       ++  A +VF 
Sbjct: 301 LVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFE 360

Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
            +           + ILV G+   +R DEAK L +EM   G  P
Sbjct: 361 VMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIP 404


>gi|168049914|ref|XP_001777406.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671255|gb|EDQ57810.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 570

 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 91/209 (43%)

Query: 67  LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
           L+P+ V   L +  +   ALS+ + L++  NF+ N  T + +  VL + Q+    + +  
Sbjct: 8   LNPYDVVAILNTLKSWKVALSLFKWLQAEQNFNLNIYTYNVMLKVLRRGQQWELSQQIAE 67

Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
           D+ ++     ++ +  L+   +     +  ++ ++       +    +Y+ ++ VY K G
Sbjct: 68  DMINAGIRPDNITYSTLISCANRCNYQDAAMAWFDRMHDAQCVPDAVTYSTMIDVYGKVG 127

Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
           K  EAV  +  V   G  P+  TY  M+      G + +A+ +F  +    I+  S  Y 
Sbjct: 128 KYDEAVALYESVKKSGWKPDKVTYGTMVRLFGRAGYISAAVSIFDEMKGSGIQPGSVVYN 187

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           I++       R   A  +  EM+  G  P
Sbjct: 188 IMISCLGRAGRMGHALKVFQEMKQAGVKP 216



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 82/187 (43%), Gaps = 10/187 (5%)

Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
           V  +L   KS + A   F W+  +  +  ++Y    ML +L R    EL  ++   + + 
Sbjct: 13  VVAILNTLKSWKVALSLFKWLQAEQNFNLNIYTYNVMLKVLRRGQQWELSQQIAEDMINA 72

Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAF---HDDRTLCGPISKFKLMLLYSSLLRTLTK 492
           G+R    T   +I         DAA+  F   HD +  C P +     + YS+++    K
Sbjct: 73  GIRPDNITYSTLISCANRCNYQDAAMAWFDRMHDAQ--CVPDA-----VTYSTMIDVYGK 125

Query: 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYM 552
             +  +A+ + E +  SG  PD  T+  ++  F   G       +F  ++ +G++P + +
Sbjct: 126 VGKYDEAVALYESVKKSGWKPDKVTYGTMVRLFGRAGYISAAVSIFDEMKGSGIQPGSVV 185

Query: 553 FKVLIQA 559
           + ++I  
Sbjct: 186 YNIMISC 192



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 76/164 (46%), Gaps = 13/164 (7%)

Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
           QPG    VY +  M++ L R G +    ++  +++  G++    T+  +++ Y  S K  
Sbjct: 180 QPGSV--VYNI--MISCLGRAGRMGHALKVFQEMKQAGVKPNAVTLSTVMEIYSRSGKVM 235

Query: 459 AALKAFHDDRT--LCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
             L  FH  R    C        +++Y+++++   +     +A   L EM+  G  P+  
Sbjct: 236 EGLGIFHHMRQDLACD-------IIVYNAVIKMCREAGLVPEAEQYLREMVEYGHQPNDW 288

Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
           T+  ++  +A  G     Q++FS + + G +PD   +  L+Q Y
Sbjct: 289 TYRNMISLYAKNGMAVEAQRMFSQLVEAGYQPDVMSYTSLLQGY 332



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 4/186 (2%)

Query: 84  SALSIMEALKSNPNFSHNQSTLHALATVLAKSQR-NHELKTLIGDISSSKFLNVSVNFMN 142
           +A+SI + +K +          + + + L ++ R  H LK +  ++  +     +V    
Sbjct: 166 AAVSIFDEMKGS-GIQPGSVVYNIMISCLGRAGRMGHALK-VFQEMKQAGVKPNAVTLST 223

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           +M+ YS SG +   L  ++  RQ         YN V+ +  + G   EA +  R++++ G
Sbjct: 224 VMEIYSRSGKVMEGLGIFHHMRQDLAC-DIIVYNAVIKMCREAGLVPEAEQYLREMVEYG 282

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             PN  TY  MI      G    A  +FS L     +     Y  L++G+   + +++ +
Sbjct: 283 HQPNDWTYRNMISLYAKNGMAVEAQRMFSQLVEAGYQPDVMSYTSLLQGYGNAKDYEKVQ 342

Query: 263 SLLNEM 268
            +L+EM
Sbjct: 343 EILHEM 348



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/127 (20%), Positives = 57/127 (44%)

Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
           T   +  V  K  +  E   L   +  S +    V +  +++ +  +G +   +S ++E 
Sbjct: 115 TYSTMIDVYGKVGKYDEAVALYESVKKSGWKPDKVTYGTMVRLFGRAGYISAAVSIFDEM 174

Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
           +       +  YNI++S   + G+   A++ F+++   G  PN+ T + ++E     GK+
Sbjct: 175 KGSGIQPGSVVYNIMISCLGRAGRMGHALKVFQEMKQAGVKPNAVTLSTVMEIYSRSGKV 234

Query: 224 DSALEVF 230
              L +F
Sbjct: 235 MEGLGIF 241


>gi|357168491|ref|XP_003581673.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14580,
           mitochondrial-like [Brachypodium distachyon]
          Length = 392

 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 81/190 (42%), Gaps = 2/190 (1%)

Query: 88  IMEALKSNP--NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQ 145
           I E  +S P    + +    + L   L +  +  E  +L+ ++   + L   V +  LM 
Sbjct: 161 IHEVYESAPWLGVTLDTCCFNILIKGLCQFGKFDEAISLLHEMPKQECLPNVVTYSTLMH 220

Query: 146 WYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP 205
           +    G ++     +   R+      T  YNI++S   + GK   A + F+ +  EG  P
Sbjct: 221 FLCQHGRVDKAFELFERMRKEEIDADTVVYNILISGLCREGKVTIAFDMFKSMSSEGCYP 280

Query: 206 NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL 265
           NS TY V+++ L+       A ++   +    ++ +   Y +L++G   V   ++   + 
Sbjct: 281 NSGTYQVLLDSLLTSRNFTEAKDLVCMMSAEGLRPSFSSYKLLIDGLCSVNCLEDGHLIF 340

Query: 266 NEMRDDGKFP 275
            +M D G  P
Sbjct: 341 KQMVDQGFIP 350



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 14/195 (7%)

Query: 89  MEALKSNPNFSHNQSTL---HALATVLAKSQRN--HELKTLIGDISSSKFLNVSVN---F 140
           ME L + P ++   ST    + L  ++ K Q    HE+        S+ +L V+++   F
Sbjct: 127 MEMLYAMPGYNCWPSTKTFNYVLHMLVCKRQYEVIHEV------YESAPWLGVTLDTCCF 180

Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
             L++     G  +  +S  +E  ++  L +  +Y+ +M    + G+  +A E F ++  
Sbjct: 181 NILIKGLCQFGKFDEAISLLHEMPKQECLPNVVTYSTLMHFLCQHGRVDKAFELFERMRK 240

Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
           E    ++  Y ++I  L   GK+  A ++F ++        S  Y +L++  +    F E
Sbjct: 241 EEIDADTVVYNILISGLCREGKVTIAFDMFKSMSSEGCYPNSGTYQVLLDSLLTSRNFTE 300

Query: 261 AKSLLNEMRDDGKFP 275
           AK L+  M  +G  P
Sbjct: 301 AKDLVCMMSAEGLRP 315



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 12/113 (10%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           ++ L++ L +  +  +AI++L EM     +P+V T+S LM+     G      +LF  +R
Sbjct: 180 FNILIKGLCQFGKFDEAISLLHEMPKQECLPNVVTYSTLMHFLCQHGRVDKAFELFERMR 239

Query: 543 QNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSL 583
           +  ++ D  ++ +LI   C            K +S+    P++ T ++L  SL
Sbjct: 240 KEEIDADTVVYNILISGLCREGKVTIAFDMFKSMSSEGCYPNSGTYQVLLDSL 292


>gi|356557791|ref|XP_003547194.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 793

 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 97/252 (38%), Gaps = 17/252 (6%)

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
           W+P     L          LVC VLR       A +FF W   Q  Y+H       ML +
Sbjct: 150 WNPNFEGRLRHLLRSLKPPLVCAVLRSQADERVALNFFYWADRQWRYSHHPVVYYTMLDV 209

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
           L++    +   R++  +   G+  P      ++  Y  + K   AL+      TL     
Sbjct: 210 LSKTKLCQGARRVLRLMTRRGIECPPEAFGYVMVSYSRAGKLRNALRVL----TLMQKAG 265

Query: 476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ 535
               + + ++ +  L K  +   A+  LE M  +GI PD+ T++ L+  +      +   
Sbjct: 266 VEPSLSICNTTIYVLVKGGKLEKALKFLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDAL 325

Query: 536 KLFSMVRQNGVEPDAYMFKVLIQAYC-------------KYLSNSNLMPDAATKELLKKS 582
           +L + +   G  PD   +  ++   C             K + NSNL+PD  T   L   
Sbjct: 326 ELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEEVKCLMEKMVWNSNLIPDQVTYNTLIHM 385

Query: 583 LWKEGRRKEAAA 594
           L K G   +A A
Sbjct: 386 LSKHGHADDALA 397



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 97/244 (39%), Gaps = 11/244 (4%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD-ISS 130
           V H LR       A  +   +     F      ++ L   L ++Q+  E K  + + ++ 
Sbjct: 522 VMHGLRREGKLSEACDLTREMVEK-GFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNK 580

Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
              +NV VNF  ++  +   GD+E  LS  ++     K     +Y  +     K G+  E
Sbjct: 581 GCAINV-VNFTTVIHGFCQIGDMEAALSVLDDMYLSGKHPDAVTYTALFDALGKKGRLDE 639

Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
           A E   +++ +G  P   TY  +I      G++D  L +   +   +  RT   Y  ++E
Sbjct: 640 AAELIVKMLSKGLDPTPVTYRSVIHRYSQWGRVDDMLNLLEKMLKRQPFRTV--YNQVIE 697

Query: 251 GFVGVERFDEAKSLLNE-MRDDGKFPGRAMRVALERMQEMGFIQGANE-----FLREMLP 304
                   +EA+ LL + +R   K       V +E   + G    A +     F R + P
Sbjct: 698 KLCDFGNLEEAEKLLGKVLRTASKVDANTCHVLMESYLKKGVAISAYKVACRMFRRNLTP 757

Query: 305 DKRI 308
           D ++
Sbjct: 758 DLKL 761



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 85/204 (41%)

Query: 65  RLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTL 124
           R L P +V   LRS  +   AL+          +SH+    + +  VL+K++     + +
Sbjct: 163 RSLKPPLVCAVLRSQADERVALNFFYWADRQWRYSHHPVVYYTMLDVLSKTKLCQGARRV 222

Query: 125 IGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK 184
           +  ++          F  +M  YS +G L   L      ++     S    N  + V  K
Sbjct: 223 LRLMTRRGIECPPEAFGYVMVSYSRAGKLRNALRVLTLMQKAGVEPSLSICNTTIYVLVK 282

Query: 185 TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQ 244
            GK  +A++   ++   G  P+  TY  +I+   +L +++ ALE+ + LP          
Sbjct: 283 GGKLEKALKFLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVS 342

Query: 245 YLILVEGFVGVERFDEAKSLLNEM 268
           Y  ++      ++ +E K L+ +M
Sbjct: 343 YYTVMGFLCKEKKIEEVKCLMEKM 366



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 43/223 (19%), Positives = 94/223 (42%), Gaps = 3/223 (1%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDIS-SSKFLNVSVNFM 141
           + AL ++  L S      ++ + + +   L K ++  E+K L+  +  +S  +   V + 
Sbjct: 322 EDALELIAGLPSK-GCPPDKVSYYTVMGFLCKEKKIEEVKCLMEKMVWNSNLIPDQVTYN 380

Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
            L+   S  G  +  L+   E + +   +    Y+ ++  + + G+  EA      +   
Sbjct: 381 TLIHMLSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSR 440

Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
           G  P+  TYT +++    LG++D A ++   +     K  +  Y  L+ G     +  EA
Sbjct: 441 GCNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTVSYTALLNGLCHSGKSLEA 500

Query: 262 KSLLNEMRDDGKFPGRAMRVA-LERMQEMGFIQGANEFLREML 303
           + ++N   +    P      A +  ++  G +  A +  REM+
Sbjct: 501 REMINVSEEHWWTPNAITYGAVMHGLRREGKLSEACDLTREMV 543



 Score = 43.5 bits (101), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 41/201 (20%), Positives = 83/201 (41%), Gaps = 1/201 (0%)

Query: 72  VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
           + H L    +AD AL+ ++  + +  F  ++    A+     +  R  E K+L+ D+ S 
Sbjct: 382 LIHMLSKHGHADDALAFLKEAQ-DKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSR 440

Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
                 V +  ++  +   G ++       +  +     +T SY  +++    +GK+ EA
Sbjct: 441 GCNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTVSYTALLNGLCHSGKSLEA 500

Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
            E      +    PN+ TY  ++  L   GKL  A ++   +       T  +  +L++ 
Sbjct: 501 REMINVSEEHWWTPNAITYGAVMHGLRREGKLSEACDLTREMVEKGFFPTPVEINLLIQS 560

Query: 252 FVGVERFDEAKSLLNEMRDDG 272
               ++  EAK  L E  + G
Sbjct: 561 LCQNQKVVEAKKYLEECLNKG 581



 Score = 40.8 bits (94), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 5/120 (4%)

Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
           E++  VM  Y++ GK   A+     +   G  P+       I  LV  GKL+ AL+    
Sbjct: 236 EAFGYVMVSYSRAGKLRNALRVLTLMQKAGVEPSLSICNTTIYVLVKGGKLEKALKFLER 295

Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFI 292
           + +  IK     Y  L++G+  + R ++A  L+  +   G  P +     +     MGF+
Sbjct: 296 MQVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYYTV-----MGFL 350


>gi|449464322|ref|XP_004149878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37230-like [Cucumis sativus]
          Length = 760

 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 110/268 (41%), Gaps = 25/268 (9%)

Query: 315 EDGSDDDEDENDDN---NSGVRIAY-GVQLKPWLDPKALANTLDEWSPEVVSLLADAKFV 370
           ++GS +D   + D     +G   A  GVQ      P+      ++    +  ++A+ +  
Sbjct: 46  QNGSPNDPSASSDAALPQTGESAAVNGVQQVKGRIPRGRPRDPEKLEKIICKMMANRE-- 103

Query: 371 WTTRL---------------VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
           WTTRL               V  VL   K  E A +FF WV     + HD     K++ I
Sbjct: 104 WTTRLQNSIRSLVPQFDHNLVYNVLHAAKKSEHALNFFRWVERAGLFQHDRETHFKIIEI 163

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
           L R   +     ++  + + G++       ++I+ YG +     A+K F   + L G   
Sbjct: 164 LGRASKLNHARCILLDMPNKGVQWDEDLFVVLIESYGKAGIVQEAVKIFQKMKEL-GVER 222

Query: 476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ 535
             K    Y +L + + +  R   A      M+  GI P   T++ +++ F L    +  +
Sbjct: 223 SVKS---YDALFKEIMRRGRYMMAKRYFNAMLNEGIEPIRHTYNVMLWGFFLSLRLETAK 279

Query: 536 KLFSMVRQNGVEPDAYMFKVLIQAYCKY 563
           + +  ++  G+ PD   +  +I  YC++
Sbjct: 280 RFYEDMKSRGISPDVVTYNTMINGYCRF 307



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 105/560 (18%), Positives = 222/560 (39%), Gaps = 85/560 (15%)

Query: 56  NSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKS 115
           NS+ SL+     D  +V + L +A  ++ AL+    ++    F H++ T   +  +L ++
Sbjct: 110 NSIRSLVPQ--FDHNLVYNVLHAAKKSEHALNFFRWVERAGLFQHDRETHFKIIEILGRA 167

Query: 116 QRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
            + +  + ++ D+ +         F+ L++ Y  +G ++  +  + + ++     S +SY
Sbjct: 168 SKLNHARCILLDMPNKGVQWDEDLFVVLIESYGKAGIVQEAVKIFQKMKELGVERSVKSY 227

Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
           + +     + G+   A   F  +++EG  P   TY VM+       +L++A   +  +  
Sbjct: 228 DALFKEIMRRGRYMMAKRYFNAMLNEGIEPIRHTYNVMLWGFFLSLRLETAKRFYEDMKS 287

Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGA 295
             I      Y  ++ G+   +  +EA+    EM+  GK       +A   +     I+G 
Sbjct: 288 RGISPDVVTYNTMINGYCRFKMMEEAEQFFTEMK--GK------NIAPTVISYTTMIKGY 339

Query: 296 NEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDE 355
               R          +R +E+     E  ND       I Y   L    D + L      
Sbjct: 340 VSVSRA------DDALRLFEEMKAAGEKPND-------ITYSTLLPGLCDAEKL------ 380

Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
             PE   +L +            V RHF +P+    F                  ++L+ 
Sbjct: 381 --PEARKILTEM-----------VTRHF-APKDNSIFM-----------------RLLSC 409

Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFST----IRLIIDFYGISKKADAALKAFH---DDR 468
             +HG ++    ++  +    +RL   T      ++I+    +   D A+K      +  
Sbjct: 410 QCKHGDLDAAMHVLKAM----IRLSIPTEAGHYGILIENCCKAGMYDQAVKLLENLVEKE 465

Query: 469 TLCGPISKFKLML-LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
            +  P S  ++    Y+ +++ L    +   A     +++  GI  +V  F+ L+   A 
Sbjct: 466 IILRPQSTLEMEASAYNLIIQYLCNHGQTGKADTFFRQLLKKGIQDEV-AFNNLIRGHAK 524

Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAAT 575
           +G+  +  ++  ++ + GV  DA  +K+LI++Y               +  +   PD+A 
Sbjct: 525 EGNPDLAFEMLKIMGRRGVSRDAESYKLLIKSYLSKGEPADAKTALDSMIENGHSPDSAL 584

Query: 576 KELLKKSLWKEGRRKEAAAV 595
              + +SL+ +GR + A+ V
Sbjct: 585 FRSVMESLFADGRVQTASRV 604


>gi|115436822|ref|NP_001043145.1| Os01g0505500 [Oryza sativa Japonica Group]
 gi|56201654|dbj|BAD73118.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113532676|dbj|BAF05059.1| Os01g0505500 [Oryza sativa Japonica Group]
 gi|125570544|gb|EAZ12059.1| hypothetical protein OsJ_01942 [Oryza sativa Japonica Group]
          Length = 540

 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 94/196 (47%), Gaps = 13/196 (6%)

Query: 372 TTRLVCKVLRHFKSPET-AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIA 430
           + +LV +VL++  +    A  FF W   Q G+ +       ++  L +     LV  L+ 
Sbjct: 119 SPQLVAEVLKNLSNAGILALAFFRWAERQQGFRYSAEGFHNLIEALGKIKQFRLVWSLVE 178

Query: 431 KLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL---MLLYSSLL 487
            +R     L   T ++I+  Y  ++K   A++ F         +S F L   +  Y+ L+
Sbjct: 179 AMRCRSC-LSKDTFKIIVRRYARARKVKEAVETFEK-------MSSFGLKTDLSDYNWLI 230

Query: 488 RTLTKCKRDFDAINVLEEMIFSG-IVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
             L+K K+   A  + +EM   G  +PD++T++ LM  +  + D  +++ ++  +   G+
Sbjct: 231 DILSKSKQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLDAGI 290

Query: 547 EPDAYMFKVLIQAYCK 562
           +PD   + +LI A+CK
Sbjct: 291 KPDVVAYGMLISAFCK 306



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 82/174 (47%), Gaps = 11/174 (6%)

Query: 108 LATVLAKSQRNHELKTLIGDIS-SSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR 166
           L  +L+KS++  +   +  ++    +F+     +  LM+ +    DL ++ + + E    
Sbjct: 229 LIDILSKSKQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLDA 288

Query: 167 AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
                  +Y +++S + K+GK  EA++ F ++ + G +P+   Y ++I  L ++ +LD A
Sbjct: 289 GIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLINGLGSMERLDEA 348

Query: 227 LEVF-----SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           L+ F     S  P M +   +     ++  +     F  A  +++EMR  G  P
Sbjct: 349 LKYFQLSKESGFP-MEVPTCNA----VIGAYCRALEFHHAFKMVDEMRKSGIGP 397



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/205 (21%), Positives = 88/205 (42%), Gaps = 6/205 (2%)

Query: 108 LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA 167
           L +   KS +  E   +  ++  S  +     +  L+    +   L+  L  +   ++  
Sbjct: 300 LISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLINGLGSMERLDEALKYFQLSKESG 359

Query: 168 KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227
             +   + N V+  Y +  +   A +   ++   G  PN+RTY +++ HL+   K++ A 
Sbjct: 360 FPMEVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAY 419

Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQ 287
            +F  +     +     Y ++V  F   ER D A  +  +M++ G  P   M  AL  + 
Sbjct: 420 NLFQRMERDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSAL--IN 477

Query: 288 EMGF---IQGANEFLREMLPDKRIK 309
            + F   ++ A  + +EML DK I+
Sbjct: 478 GLCFENRLEEACVYFQEML-DKGIR 501



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 3/146 (2%)

Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
           +E R+     +T +Y+I+++   K+ K  EA   F+++  +G  P   TYT+M+    + 
Sbjct: 388 DEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTMMVGMFCSN 447

Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAM 279
            ++D AL+V+  +    +      +  L+ G     R +EA     EM D G + PG+  
Sbjct: 448 ERVDMALKVWKQMKEKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLF 507

Query: 280 RVALERMQEMGFIQGANEFLR--EML 303
               E + E G I  A E  +  EML
Sbjct: 508 SNLKEALVEGGRITLAQEVTQRLEML 533



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 84/193 (43%), Gaps = 21/193 (10%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   DV A   +++   + G  +   ++  ++   G         ++I+  G  ++ D A
Sbjct: 289 GIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLINGLGSMERLDEA 348

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFS 519
           LK F   +    P+       +  +  R L     +F  A  +++EM  SGI P+ +T+ 
Sbjct: 349 LKYFQLSKESGFPMEVPTCNAVIGAYCRAL-----EFHHAFKMVDEMRKSGIGPNTRTYD 403

Query: 520 GLMYHFALQGDEKIVQ--KLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKE 577
            ++ H  L   EKI +   LF  + ++G EP+   + +++  +C     SN   D A K 
Sbjct: 404 IILNH--LIKSEKIEEAYNLFQRMERDGCEPELNTYTMMVGMFC-----SNERVDMALK- 455

Query: 578 LLKKSLWKEGRRK 590
                +WK+ + K
Sbjct: 456 -----VWKQMKEK 463



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 66/173 (38%), Gaps = 37/173 (21%)

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
            F NL++         LV S     R R+  LS +++ I++  YA+  K  EAVETF ++
Sbjct: 156 GFHNLIEALGKIKQFRLVWSLVEAMRCRS-CLSKDTFKIIVRRYARARKVKEAVETFEKM 214

Query: 199 IDEGA------------------------------------IPNSRTYTVMIEHLVNLGK 222
              G                                     IP+ +TYTV++E   +   
Sbjct: 215 SSFGLKTDLSDYNWLIDILSKSKQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKD 274

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
           L     V+  +    IK     Y +L+  F    + DEA  + +EM + G  P
Sbjct: 275 LLMLKAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMP 327


>gi|125524465|gb|EAY72579.1| hypothetical protein OsI_00445 [Oryza sativa Indica Group]
          Length = 1014

 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 109/262 (41%), Gaps = 16/262 (6%)

Query: 44  DSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPN-FSHNQ 102
           D IRL    + +N   S + D L    +V  A   A         +  L   PN F++N 
Sbjct: 293 DMIRLGFVPSEANC--SFMIDELRKKELVEEAFSLACK-------LGDLGMVPNVFAYN- 342

Query: 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE 162
               AL   L K++R  +   L  +++        V +  L+      G +E  L  +++
Sbjct: 343 ----ALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDK 398

Query: 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222
            R +   ++   YN +++ Y K G    A      ++ EG  P + +Y+ +I  L   G 
Sbjct: 399 MRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGD 458

Query: 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRV 281
           L SA+E+   +    I   +  +  L+ GF   ++ DEA  L ++M D    P      V
Sbjct: 459 LSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNV 518

Query: 282 ALERMQEMGFIQGANEFLREML 303
            +E    +G I+ A +   +M+
Sbjct: 519 MIEGYCLVGNIRKAFQLYDQMV 540



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 1/153 (0%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
            +S N  T   L   L KS      + L  ++ +   L     +   + +++T GD+E  
Sbjct: 683 GYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKA 742

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
               +   Q   L S  S+NI++    K GK  EA++  R++ + G  P+  +Y+ +I  
Sbjct: 743 KDLHSAMLQ-GHLASIVSFNILIKGLCKAGKIQEAIDLMRKITESGFSPDCISYSTIIHE 801

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILV 249
           L  +G ++ A E+++ +    +K     Y I +
Sbjct: 802 LCKMGDINKAFELWNEMLYKGLKPDVVAYNIFI 834



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 94/227 (41%), Gaps = 9/227 (3%)

Query: 42  LIDSIRLAVRSNSSNSLSSLLNDRLLDP-----FIVTHALRSAPNADSALSIMEALKSNP 96
           LID +    R + ++ L   +  R L+P      I+ HAL      + AL + + ++ + 
Sbjct: 344 LIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMR-DK 402

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
                    ++L     K       + L+  +        + ++  L+     +GDL   
Sbjct: 403 GIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSA 462

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           +    E  +R    +  ++  +++ + K  K  EA   F ++ID   IPN  T+ VMIE 
Sbjct: 463 MELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEG 522

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV---GVERFDE 260
              +G +  A +++  +  M +K  +  Y  L+ G     GV + +E
Sbjct: 523 YCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANE 569



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 46/79 (58%)

Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
           +++L+    K K+  +A  + ++MI S ++P+  TF+ ++  + L G+ +   +L+  + 
Sbjct: 481 FTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMV 540

Query: 543 QNGVEPDAYMFKVLIQAYC 561
           + G++PD Y ++ LI   C
Sbjct: 541 EMGLKPDNYTYRSLISGLC 559



 Score = 40.0 bits (92), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 32/164 (19%), Positives = 70/164 (42%), Gaps = 1/164 (0%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           + +L+  Y   G L+      +   +     +  SY+ +++   + G    A+E  R++ 
Sbjct: 411 YNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSAMELHREMA 470

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           + G   N+ T+T +I       K+D A  +F  +    +      + +++EG+  V    
Sbjct: 471 ERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIR 530

Query: 260 EAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREM 302
           +A  L ++M + G  P     R  +  +     +  ANEF+ ++
Sbjct: 531 KAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADL 574



 Score = 39.7 bits (91), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 46/225 (20%), Positives = 89/225 (39%), Gaps = 17/225 (7%)

Query: 380 LRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
           LR  +  E A+   C +    G   +V+A   ++  L ++   +  DRL  ++   G+  
Sbjct: 313 LRKKELVEEAFSLACKLG-DLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEP 371

Query: 440 PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDA 499
              T  ++I         + AL  F   R     ++ +     Y+SL+    K      A
Sbjct: 372 NEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYP----YNSLINGYCKQGSLDRA 427

Query: 500 INVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
             +L  M+  G+ P   ++S L+      GD     +L   + + G+  + Y F  LI  
Sbjct: 428 RGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSAMELHREMAERGIAWNNYTFTALING 487

Query: 560 YCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
           +CK             + +SN++P+  T  ++ +     G  ++A
Sbjct: 488 FCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKA 532


>gi|357162065|ref|XP_003579293.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Brachypodium distachyon]
          Length = 858

 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 96/226 (42%), Gaps = 22/226 (9%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D+Y     +  + + G++EL  +++  + +  ++    T   +ID Y   +K D A
Sbjct: 334 GIGRDIYTYNTFIDAICKCGNIELAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEA 393

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
           LK +   ++L   + +    + Y+++L    K  +  +   V +EM  SGI  D  T++ 
Sbjct: 394 LKLYEKMKSLGIQLDR----VCYNTVLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNS 449

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK----------YL--SNSN 568
           L+  +  QG   IV  L   +R+ GV P    +  LI  Y K          YL    S 
Sbjct: 450 LINGYGKQGRLDIVSFLVQDMRRRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESG 509

Query: 569 LMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHI 614
           L PD         +L K G       VE     +ND+  + ++ ++
Sbjct: 510 LKPDVVLFSSFIDTLAKNG------LVEWALSLLNDMTEMGIKPNV 549



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 96/223 (43%), Gaps = 14/223 (6%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D AL + E +KS      ++   + +  +  K+ +  E+  +  ++  S     +V + +
Sbjct: 391 DEALKLYEKMKS-LGIQLDRVCYNTVLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNS 449

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  Y   G L++V     + R+R    S  +Y+ ++ +Y+K G + +A   +    + G
Sbjct: 450 LINGYGKQGRLDIVSFLVQDMRRRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESG 509

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+   ++  I+ L   G ++ AL + + +  M IK     Y  +++ F   +   E  
Sbjct: 510 LKPDVVLFSSFIDTLAKNGLVEWALSLLNDMTEMGIKPNVVTYNTIIDAFGKSKVLSEED 569

Query: 263 SLLNEMRDDGKFPGRAMRVA-------------LERMQEMGFI 292
               EM   G + G+ +R A             + R QE+ FI
Sbjct: 570 PEAGEMGIVGVYNGQIIRAANPVTRGRSAIDVRMRRSQELYFI 612



 Score = 46.6 bits (109), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 34/167 (20%), Positives = 75/167 (44%), Gaps = 1/167 (0%)

Query: 107 ALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG-DLELVLSTWNEYRQ 165
           AL +  A+S   +E   ++  +  +     +V +  ++      G DL   L  + +  +
Sbjct: 238 ALISAYARSGLVNEAMGVLESMKGAGLRPTTVTYNAVIDACGKGGVDLRFTLGYFRQMLR 297

Query: 166 RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
                  +++N ++S  ++ G   +A   F ++I  G   +  TY   I+ +   G ++ 
Sbjct: 298 DRLCPDRKTFNSLLSACSRAGHLEDARALFDEMIHLGIGRDIYTYNTFIDAICKCGNIEL 357

Query: 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
           A++V   +    +K     Y  L++G+  +E++DEA  L  +M+  G
Sbjct: 358 AMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSLG 404



 Score = 44.3 bits (103), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 23/172 (13%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           GY + V+A   +++  AR G V     ++  ++  G+R    T   +ID  G        
Sbjct: 228 GYGNTVFANSALISAYARSGLVNEAMGVLESMKGAGLRPTTVTYNAVIDACG-------- 279

Query: 461 LKAFHDDRTLCGPISKFKLML---------LYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
            K   D R   G    F+ ML          ++SLL   ++     DA  + +EMI  GI
Sbjct: 280 -KGGVDLRFTLG---YFRQMLRDRLCPDRKTFNSLLSACSRAGHLEDARALFDEMIHLGI 335

Query: 512 VPDVQTFSGLMYHFALQGD-EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
             D+ T++  +      G+ E  +Q L  M  +N V+P+   +  LI  Y K
Sbjct: 336 GRDIYTYNTFIDAICKCGNIELAMQVLLDMEAKN-VKPNVVTYSTLIDGYSK 386



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 69/174 (39%), Gaps = 4/174 (2%)

Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
           G   D      +L I  + G    +  +  ++   G+     T   +I+ YG   + D  
Sbjct: 404 GIQLDRVCYNTVLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLDIV 463

Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
                D R      S    +L YS+L+   +K     DA NV  +   SG+ PDV  FS 
Sbjct: 464 SFLVQDMRRRGVAPS----VLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSS 519

Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAA 574
            +   A  G  +    L + + + G++P+   +  +I A+ K    S   P+A 
Sbjct: 520 FIDTLAKNGLVEWALSLLNDMTEMGIKPNVVTYNTIIDAFGKSKVLSEEDPEAG 573



 Score = 40.4 bits (93), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 30/133 (22%), Positives = 58/133 (43%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           F +L+   S +G LE   + ++E           +YN  +    K G    A++    + 
Sbjct: 307 FNSLLSACSRAGHLEDARALFDEMIHLGIGRDIYTYNTFIDAICKCGNIELAMQVLLDME 366

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
            +   PN  TY+ +I+    L K D AL+++  +  + I+     Y  ++  +V   ++ 
Sbjct: 367 AKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSLGIQLDRVCYNTVLAIYVKAGKYG 426

Query: 260 EAKSLLNEMRDDG 272
           E   + +EM D G
Sbjct: 427 EIAIVCDEMEDSG 439


>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 724

 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 78/205 (38%), Gaps = 1/205 (0%)

Query: 79  APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV 138
           A N D A  +M  L  +  F  N  T +A+   L K  R  E   L+    S       V
Sbjct: 429 AGNFDRAYELMN-LMDDEGFRPNIYTYNAVIDSLCKKSRAPEAYELLNKAFSCGLEADGV 487

Query: 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198
            +  L+Q      D++  L+ +    +          NI+++ + +  K  E+   F+ V
Sbjct: 488 TYTILIQEQCKQSDIKQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLV 547

Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
           +  G +P   TYT MI      G  D AL+ F  +        S  Y  L+ G       
Sbjct: 548 VSLGLVPTKETYTSMISGYCKEGDFDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMV 607

Query: 259 DEAKSLLNEMRDDGKFPGRAMRVAL 283
           DEA  L   M D G  P    RV L
Sbjct: 608 DEACKLYEAMIDRGLSPPEVTRVTL 632



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 79/388 (20%), Positives = 150/388 (38%), Gaps = 41/388 (10%)

Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
           +++ G+  EAV     + ++G  P+S T   ++E  +  G +D A  VF  + +  +   
Sbjct: 180 FSEIGRLNEAVGMVMDMQNQGLSPSSITMNCVLEIAIESGLIDYAENVFDEMSVRGVCPD 239

Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA-MRVALERMQEMGFIQGANEFLR 300
           S  + ++V G     +  EA   L+ M   G  P  A   + L  + E G +  A  + R
Sbjct: 240 SSSFKLMVIGCFRDGKIQEADRWLSGMIQRGFIPDNATCTLILSALCENGLVNRAIWYFR 299

Query: 301 EMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEV 360
           +M+      N+  +    D           G+     ++    +  + + N    W P V
Sbjct: 300 KMIDLGFKPNLINFTSLID-----------GLCKKGSIKQAFEMLEEMVRNG---WKPNV 345

Query: 361 V--SLLADA--KFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTIL 416
              + L D   K  WT              E A+  F  +     Y  +V+    M+   
Sbjct: 346 YTHTALIDGLCKRGWT--------------EKAFRLFLKLVRSDIYKPNVHTYTSMIGGY 391

Query: 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA--LKAFHDDRTLCGPI 474
            +   +   + L ++++  G+    +T   +I+ +  +   D A  L    DD      I
Sbjct: 392 CKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNI 451

Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
                   Y++++ +L K  R  +A  +L +    G+  D  T++ L+     Q D K  
Sbjct: 452 ------YTYNAVIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQSDIKQA 505

Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
              F  + + G E D  +  +LI A+C+
Sbjct: 506 LAFFCRMNKTGFEADMRLNNILIAAFCR 533



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/83 (22%), Positives = 45/83 (54%)

Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
           M L + L+    + K+  ++  + + ++  G+VP  +T++ ++  +  +GD  +  K F 
Sbjct: 521 MRLNNILIAAFCRQKKMKESERLFQLVVSLGLVPTKETYTSMISGYCKEGDFDLALKYFH 580

Query: 540 MVRQNGVEPDAYMFKVLIQAYCK 562
            ++++G  PD++ +  LI   CK
Sbjct: 581 NMKRHGCVPDSFTYGSLISGLCK 603



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 1/139 (0%)

Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
           +NF +L+      G ++       E  +     +  ++  ++    K G   +A   F +
Sbjct: 311 INFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLK 370

Query: 198 VIDEGAI-PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
           ++      PN  TYT MI       KL+ A  +FS +    +      Y  L+ G     
Sbjct: 371 LVRSDIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAG 430

Query: 257 RFDEAKSLLNEMRDDGKFP 275
            FD A  L+N M D+G  P
Sbjct: 431 NFDRAYELMNLMDDEGFRP 449


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 103/503 (20%), Positives = 196/503 (38%), Gaps = 60/503 (11%)

Query: 83  DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
           D A  I++ +     F  + ST   + T L ++ +  +   L  ++ S         +  
Sbjct: 270 DMAFQIIKVMMGK-GFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTI 328

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L+  +  +G +E   S ++E R      +  +Y  ++  Y K  +  +A + F ++ID G
Sbjct: 329 LIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAG 388

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALP----------LMRIKRTSK------QYL 246
             PN+ TY+ +++ L   G++  A EV++ L               K T         Y 
Sbjct: 389 CPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYG 448

Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPD 305
            L++G     +  +A+ LL+ M  +G  P   +  AL +   ++G I  A E    M   
Sbjct: 449 ALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKC 508

Query: 306 KRIKNVRYYEDGSDDD-EDENDDNNSGVRIAYGVQLKPWLDPKALANTLD-EWSPEVVSL 363
             +  V  Y    D   +D   D                L  K L+  ++   +P VV+ 
Sbjct: 509 GYLPTVHTYTSLIDAMFKDRRLD----------------LAMKVLSQMVESSCTPNVVTY 552

Query: 364 LADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVE 423
            A    +       K L+     E           + G + +V     ++  L + G V+
Sbjct: 553 TAMIDGLCRIGECQKALKLLSMME-----------EKGCSPNVVTYTALIDGLGKSGKVD 601

Query: 424 LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLY 483
           L  +L  ++ + G    + T R++I+    +   D A     + +    P    K +  Y
Sbjct: 602 LSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWP----KYLQGY 657

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
            S+++  +  K+   ++ +LEE+   G VP    +  L+ +F+  G  +   +L   + +
Sbjct: 658 CSVVQGFS--KKFIASLGLLEELESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMME 715

Query: 544 -----NGVEPDAYMFKVLIQAYC 561
                N    D  M+  LIQA C
Sbjct: 716 LSSSLNITSKD--MYTSLIQALC 736



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 87/206 (42%), Gaps = 6/206 (2%)

Query: 69  PFIVTHA-----LRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKT 123
           P +VT+      L  A     A  +++A+ SN     N     AL     K  +    + 
Sbjct: 442 PNVVTYGALIDGLCKAHKVVDAQELLDAMLSN-GCEPNHIIYDALIDGFCKVGKIDNAQE 500

Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
           +   +S   +L     + +L+        L+L +   ++  + +   +  +Y  ++    
Sbjct: 501 VFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLC 560

Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
           + G+  +A++    + ++G  PN  TYT +I+ L   GK+D +L++F  +          
Sbjct: 561 RIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYV 620

Query: 244 QYLILVEGFVGVERFDEAKSLLNEMR 269
            Y +L+         DEA SLL+EM+
Sbjct: 621 TYRVLINHCCAAGLLDEAHSLLSEMK 646



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 497 FD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV 555
           FD A  +++ M+  G VPD  T+S ++         +    LF  ++  GV PD Y + +
Sbjct: 269 FDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTI 328

Query: 556 LIQAYCK 562
           LI ++CK
Sbjct: 329 LIDSFCK 335



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 44/87 (50%)

Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
           GK   A +  + ++ +G +P++ TY+ +I  L    K++ A  +F  +  + +      Y
Sbjct: 267 GKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTY 326

Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDG 272
            IL++ F      ++A+S  +EMR  G
Sbjct: 327 TILIDSFCKAGLIEQARSWFDEMRSIG 353


>gi|242038885|ref|XP_002466837.1| hypothetical protein SORBIDRAFT_01g014995 [Sorghum bicolor]
 gi|241920691|gb|EER93835.1| hypothetical protein SORBIDRAFT_01g014995 [Sorghum bicolor]
          Length = 1014

 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 100/521 (19%), Positives = 199/521 (38%), Gaps = 93/521 (17%)

Query: 97  NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
           NF  + +T + L   L  +    + + ++  + + +  N SV +  ++ WY   G  +  
Sbjct: 218 NFPLDVTTCNILLNSLCTNGEFRKAEDMLQKMKTCRLSN-SVTYNTILHWYVKKGRFKAA 276

Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
           L    +  + +      +YNI++    +  ++  A    +++  +  IP+  TY  +I  
Sbjct: 277 LCVLEDMERDSIPADIYTYNIMIDKLCRIKRSARAFLLLKRMRKDDLIPDECTYNTLING 336

Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
               GK++ A  VF+ +       +   Y  +++G+    R D+A S+L+EM+  G  P 
Sbjct: 337 FFGEGKINHAHYVFNHMLRQTFVPSVATYTTMIDGYCRNRRIDKALSVLSEMQITGVMPS 396

Query: 277 RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDD-------EDENDDNN 329
                          I  A + L+ ML           EDG D D        +E     
Sbjct: 397 E--------------ISKAKQILKSML-----------EDGIDPDIVTYSALINEGMITE 431

Query: 330 SGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETA 389
           +     Y  ++K   D  +    +D +       + +A  V+       ++R+  SP   
Sbjct: 432 AEHFRQYMSRMKISFDSVSFNCIIDSYCHR--GNIVEAFTVYDA-----MVRYGHSP--- 481

Query: 390 WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP-------FS 442
                          +V   + +L  L + GH+    + +  L    + +P       F+
Sbjct: 482 ---------------NVCTYQNLLRGLCQGGHLVQAKQFMFCL----LDIPSAIDEKTFN 522

Query: 443 TIRLIIDFYGISKKA-DAALKAFHDDRTLCGP-ISKFKLMLLYSSLLRTLTKCKRDFDAI 500
            + L I  YG   +A D   K   ++   C P I  + ++L  S   R      +   A+
Sbjct: 523 ALLLGICKYGTLDEALDLCEKMVKNN---CLPDIHTYTILL--SGFCRK----GKILPAL 573

Query: 501 NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS-MVRQNGVEPDAYMFKVLIQA 559
            +L+ M+  G+VPD   ++ L+     +G  K    +F  ++ + G+  D   +  L+  
Sbjct: 574 IMLQMMLDKGVVPDTVAYTCLLNGLINEGQVKAASYVFQEIICKEGLYADCIAYNSLMNG 633

Query: 560 YCKY------------LSNSNLMPDAATKELLKKSLWKEGR 588
           Y K             +  S + P++A+  +L     K G+
Sbjct: 634 YLKGGNINTIKRMMSDMYQSEVYPNSASYNILMHGYVKGGQ 674



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 1/121 (0%)

Query: 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242
            K GK  EAV  F  ++  G +P   T+T ++  L    K+  AL +   +   R+K   
Sbjct: 845 CKCGKLEEAVIVFSTMMRSGMVPTVATFTTLMHCLCKESKIADALHLKRLMESCRLKVDV 904

Query: 243 KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALE-RMQEMGFIQGANEFLRE 301
             Y +L+ G    +R  +A  L  EM+  G +P     + L   M   G +Q   E L +
Sbjct: 905 VSYNVLITGLCKDKRISDALDLYEEMKSKGLWPNVTTYITLTGAMYSTGIMQNGEELLED 964

Query: 302 M 302
           +
Sbjct: 965 I 965



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 77/182 (42%), Gaps = 35/182 (19%)

Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
            + + +LM  Y   G++  +    ++  Q     ++ SYNI+M  Y K G+  +++  ++
Sbjct: 624 CIAYNSLMNGYLKGGNINTIKRMMSDMYQSEVYPNSASYNILMHGYVKGGQFSKSLYLYK 683

Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLG----------------------------------- 221
            ++ +G  P++ TY ++I  L   G                                   
Sbjct: 684 YMVRKGIRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDRLVFDILITAFSEKS 743

Query: 222 KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRV 281
           K+ +AL++F+ +  +R+  +SK Y  ++ G +     D++  +L EM   G  P     +
Sbjct: 744 KMHNALQLFNCMKWLRMSPSSKTYSAMINGLIRKNYLDQSHEVLREMLQVGLQPNHTHYI 803

Query: 282 AL 283
           AL
Sbjct: 804 AL 805



 Score = 45.8 bits (107), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 16/137 (11%)

Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF--SMV 541
           SS++R L KC +  +A+ V   M+ SG+VP V TF+ LM+   L  + KI   L    ++
Sbjct: 838 SSIIRGLCKCGKLEEAVIVFSTMMRSGMVPTVATFTTLMH--CLCKESKIADALHLKRLM 895

Query: 542 RQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRR 589
               ++ D   + VLI   CK             + +  L P+  T   L  +++  G  
Sbjct: 896 ESCRLKVDVVSYNVLITGLCKDKRISDALDLYEEMKSKGLWPNVTTYITLTGAMYSTGIM 955

Query: 590 KEAAAVEERCEKINDVP 606
           +    + E  E+   +P
Sbjct: 956 QNGEELLEDIEERGLIP 972


>gi|225464410|ref|XP_002269194.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic [Vitis vinifera]
          Length = 929

 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 84/428 (19%), Positives = 174/428 (40%), Gaps = 38/428 (8%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           F  ++ +Y+  GD+     T+   R R    ++  Y  ++  YA      EA+   R++ 
Sbjct: 292 FGLMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCVRKMK 351

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
           +EG   +  TY++++     +   ++A   F           +  Y  ++          
Sbjct: 352 EEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAHCQACNMT 411

Query: 260 EAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSD 319
           +A++L+ EM ++    G    + +      G+    NE    ++ D R+K   +      
Sbjct: 412 QAEALVREMEEE----GIDAPIDIYHTMMDGYTIIGNEEKCLIVFD-RLKECGF------ 460

Query: 320 DDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKV 379
                     +   I+YG  +  ++    ++  L     EV  ++  A      +    +
Sbjct: 461 ----------TPSVISYGCLINLYIKIGKVSKAL-----EVSKMMEVAGIKHNMKTYSML 505

Query: 380 LRHF---KSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436
           +  F   K    A+  F  V  + G   DV     ++      G+++   R + +++ + 
Sbjct: 506 INGFVRLKDWANAFAVFEDVV-KDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKER 564

Query: 437 MRLPFSTIRLIIDFYGISKKADAALKAFHDDR-TLCGP-ISKFKLMLLYSSLLRTLTKCK 494
            R    T   II  +  S     AL+ F   R + C P +  F  ++L       + KC+
Sbjct: 565 HRPTTRTFMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALIL-----GLVEKCQ 619

Query: 495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK 554
            +  A+ +L+EM  +GI P+  T++ +M+ +A  GD     + F+ ++  G+E D Y ++
Sbjct: 620 ME-KAVEILDEMSLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYE 678

Query: 555 VLIQAYCK 562
            L++A CK
Sbjct: 679 ALLKACCK 686



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 63/137 (45%)

Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
           L++    SG ++  L+   E   +    +T  YNI++  +A+ G  +EA E  +Q+  EG
Sbjct: 680 LLKACCKSGRMQSALAVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEG 739

Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
             P+  TYT  I      G +  A +    + ++ +K   K Y  L+ G+      ++A 
Sbjct: 740 VQPDIHTYTSFINACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTLIHGWARASLPEKAL 799

Query: 263 SLLNEMRDDGKFPGRAM 279
               EM+  G  P +A+
Sbjct: 800 KCFQEMKSAGLKPDKAV 816



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%)

Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
           +Y  +M  YA  G   +A E F ++  EG   +  TY  +++     G++ SAL V   +
Sbjct: 641 TYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREM 700

Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
              +I R +  Y IL++G+       EA  L+ +M+ +G  P
Sbjct: 701 SSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQP 742



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/129 (22%), Positives = 57/129 (44%)

Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
           FM ++  ++ SGD+   L  ++  R    + +  ++N ++    +  +  +AVE   ++ 
Sbjct: 572 FMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMS 631

Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
             G  PN  TYT ++    +LG    A E F+ L    ++     Y  L++      R  
Sbjct: 632 LAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQ 691

Query: 260 EAKSLLNEM 268
            A ++  EM
Sbjct: 692 SALAVTREM 700



 Score = 42.4 bits (98), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 74/182 (40%), Gaps = 21/182 (11%)

Query: 419 HGHVELVD-----RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGP 473
           HG+  L D         KL+++G+ L   T   ++     S +  +AL    +  +   P
Sbjct: 647 HGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIP 706

Query: 474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533
            + F    +Y+ L+    +    ++A  ++++M   G+ PD+ T++  +      GD + 
Sbjct: 707 RNTF----VYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQR 762

Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKK 581
             K    +   GV+P+   +  LI  + +             + ++ L PD A    L  
Sbjct: 763 ATKTIQEMEVVGVKPNIKTYTTLIHGWARASLPEKALKCFQEMKSAGLKPDKAVYHCLMT 822

Query: 582 SL 583
           SL
Sbjct: 823 SL 824



 Score = 38.9 bits (89), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 2/107 (1%)

Query: 165 QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK-L 223
           +R K  S + + ++++ YA+ G    A  TF  +   G  P S  YT +I H   +G+ +
Sbjct: 282 ERIKKPSRKEFGLMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLI-HAYAVGRDM 340

Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
           + AL     +    I+ +   Y ILV GF  +   + A     E ++
Sbjct: 341 EEALSCVRKMKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKE 387


>gi|357431212|gb|AET78283.1| At1g03560-like protein [Arabidopsis halleri]
 gi|357431214|gb|AET78284.1| At1g03560-like protein [Arabidopsis halleri]
 gi|357431216|gb|AET78285.1| At1g03560-like protein [Arabidopsis halleri]
 gi|357431218|gb|AET78286.1| At1g03560-like protein [Arabidopsis halleri]
 gi|357431220|gb|AET78287.1| At1g03560-like protein [Arabidopsis halleri]
 gi|357431226|gb|AET78290.1| At1g03560-like protein [Arabidopsis halleri]
 gi|357431230|gb|AET78292.1| At1g03560-like protein [Arabidopsis halleri]
 gi|357431232|gb|AET78293.1| At1g03560-like protein [Arabidopsis halleri]
 gi|357431234|gb|AET78294.1| At1g03560-like protein [Arabidopsis halleri]
 gi|357431236|gb|AET78295.1| At1g03560-like protein [Arabidopsis halleri]
 gi|357431238|gb|AET78296.1| At1g03560-like protein [Arabidopsis halleri]
 gi|357431248|gb|AET78301.1| At1g03560-like protein [Arabidopsis halleri]
 gi|357431260|gb|AET78307.1| At1g03560-like protein [Arabidopsis halleri]
 gi|357431264|gb|AET78309.1| At1g03560-like protein [Arabidopsis halleri]
 gi|357431266|gb|AET78310.1| At1g03560-like protein [Arabidopsis halleri]
          Length = 161

 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 54/98 (55%)

Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
           Y +++  YAK+G   +A+   +++IDEG  P+  TY+V++  L   G+++ AL+ F    
Sbjct: 9   YTVLIDGYAKSGSVEDAIRLLQRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFKTCR 68

Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
              +   S  Y  L++G   V R DEA+ L  EM + G
Sbjct: 69  FNGLAINSMFYSSLIDGLGKVGRVDEAERLFEEMSEKG 106



 Score = 45.8 bits (107), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 1/137 (0%)

Query: 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
           NV++ +  L+  Y+ SG +E  +                +Y++V++   K G+  EA++ 
Sbjct: 5   NVAI-YTVLIDGYAKSGSVEDAIRLLQRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDY 63

Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
           F+     G   NS  Y+ +I+ L  +G++D A  +F  +      R S  Y  L++ F  
Sbjct: 64  FKTCRFNGLAINSMFYSSLIDGLGKVGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTK 123

Query: 255 VERFDEAKSLLNEMRDD 271
             + +EA +L   M ++
Sbjct: 124 HGKVNEALALFKRMEEE 140



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 5/144 (3%)

Query: 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK 476
           A+ G VE   RL+ ++  +G +    T  ++++    + + + AL  F   R     I+ 
Sbjct: 17  AKSGSVEDAIRLLQRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFKTCRFNGLAINS 76

Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
               + YSSL+  L K  R  +A  + EEM   G   D   ++ L+  F   G       
Sbjct: 77  ----MFYSSLIDGLGKVGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVNEALA 132

Query: 537 LFS-MVRQNGVEPDAYMFKVLIQA 559
           LF  M  + G +   Y + +LI  
Sbjct: 133 LFKRMEEEEGCDQTVYTYTILISG 156


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.321    0.134    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,227,467,884
Number of Sequences: 23463169
Number of extensions: 366132828
Number of successful extensions: 1396624
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4141
Number of HSP's successfully gapped in prelim test: 2149
Number of HSP's that attempted gapping in prelim test: 1320463
Number of HSP's gapped (non-prelim): 59360
length of query: 638
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 489
effective length of database: 8,863,183,186
effective search space: 4334096577954
effective search space used: 4334096577954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)