BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006615
(638 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B3H4P1|PP450_ARATH Pentatricopeptide repeat-containing protein At5g66631
OS=Arabidopsis thaliana GN=At5g66631 PE=2 SV=1
Length = 661
Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/643 (58%), Positives = 474/643 (73%), Gaps = 25/643 (3%)
Query: 20 QTRSFVRAPFTNKLALYLRRAQLIDSIRLAVRS--NSSNSLSSLLNDRLLDPFIVTHALR 77
Q R F R PF NK+ YL RA LIDSIRL++RS S +L+SLLN RLLD F+V +ALR
Sbjct: 20 QIRFFSRDPFPNKVQHYLYRANLIDSIRLSLRSPTTSDRTLASLLNHRLLDSFVVKNALR 79
Query: 78 SAPNADSALSIMEALK-SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNV 136
S+P+ SA SI + L +P FS TLHA ATVLAK QR+ EL +LIG +++ KF NV
Sbjct: 80 SSPSVSSAWSIFKTLSHKSPRFSFETETLHAFATVLAKFQRSSELNSLIGVVNAWKFRNV 139
Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYR--QRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
+FMNL+ Y+T+GD + VL TW+EYR K TESYNIVM VY GK+ EAV+T
Sbjct: 140 HFSFMNLLNLYATAGDFDSVLKTWDEYRCSGEEKKGCTESYNIVMQVYMTLGKDSEAVQT 199
Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
F Q+I+EG IPNSRT+T+MIEHLV LG LD+A+++F LPLMRI RT K Y +LVE FV
Sbjct: 200 FDQIINEGGIPNSRTFTIMIEHLVKLGNLDAAMKIFETLPLMRITRTLKHYSVLVEAFVD 259
Query: 255 VERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
+RFDE K+L+ EM+ DGKFP R M L+RM+E GF EFLREMLPD+RIK++ Y
Sbjct: 260 AQRFDEVKTLIAEMKSDGKFPSRRMLEPLKRMREAGFEHETEEFLREMLPDERIKDISMY 319
Query: 315 E-DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTT 373
D D EDE D+ V A V+LKPWLDPKALA +L +WS + V+ L +A FVWT
Sbjct: 320 SMDNPSDSEDEGDEYKDDVNEA-QVKLKPWLDPKALATSLKKWSSDAVTALEEANFVWTN 378
Query: 374 RLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
LVCK+LR+F++PETAW FFCWVA QPG+THD Y +E+M+ +LAR+G VELVD+LI+K+R
Sbjct: 379 LLVCKMLRNFRAPETAWSFFCWVAIQPGFTHDAYTIERMMAMLARNGQVELVDKLISKVR 438
Query: 434 SDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKC 493
+G++LPFSTIRLIID YGISKK +AA+K F++DRTLCG IS F LMLLYSSLLRTLTKC
Sbjct: 439 IEGIKLPFSTIRLIIDLYGISKKPEAAIKVFNEDRTLCGSISDFNLMLLYSSLLRTLTKC 498
Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
KR+ +A+ LE+M+ +G+ PD+QTFSGLMYHFALQG+ + V++LFSMVRQ G+EPD YM
Sbjct: 499 KRNAEALETLEDMMLTGVSPDIQTFSGLMYHFALQGEIQTVERLFSMVRQIGLEPDPYML 558
Query: 554 KVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEK 601
K+L+QAYC+ + +SNLMPD TKELL KSLW+E +RKEAAAVEE E+
Sbjct: 559 KLLVQAYCRCERSVLAYRVFQDMKDSNLMPDRETKELLVKSLWREEKRKEAAAVEESYEE 618
Query: 602 IND------VPSLALRGHIWAVSSADLTRVHSIYRNSITSIVT 638
ND V LAL+GH+W +SS D++RV+++YR+ + T
Sbjct: 619 ENDNKNSSNVLRLALKGHVWTISSTDISRVYNLYRDCVLKTST 661
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 96.7 bits (239), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 131/585 (22%), Positives = 240/585 (41%), Gaps = 75/585 (12%)
Query: 45 SIRLAVRSNSSNSLSSLLNDRLLDPFI-----VTHALRSAPNADSALSIMEALKSNPNFS 99
S+R +V S S+ S + + P + VT L+S P+ DS+ S +++ N N
Sbjct: 56 SMRCSVVSMKSSDFSGSMIRKSSKPDLSSSEEVTRGLKSFPDTDSSFSYFKSVAGNLNLV 115
Query: 100 HNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN-FMNLMQWYSTSGDLELVLS 158
H T + + L + E+ + D+ + + N ++ + + S G L+
Sbjct: 116 HTTETCNYMLEALRVDGKLEEMAYVF-DLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPY 174
Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
+ R+ +L+ SYN ++ + K+ EA+E +R++I EG P+ +TY+ + +V
Sbjct: 175 ALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSL---MV 231
Query: 219 NLGK---LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
LGK +DS + + + + +K + I + + +EA +L M D+G P
Sbjct: 232 GLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGP 291
Query: 276 GRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRI 334
V ++ + + A E +M K R+ D R+
Sbjct: 292 DVVTYTVLIDALCTARKLDCAKEVFEKM------KTGRHKPD----------------RV 329
Query: 335 AYGVQLKPWLDPKALANTLDEWS--------PEVVS--LLADAKFVWTTRLVCKVLRHFK 384
Y L + D + L + WS P+VV+ +L DA +CK +
Sbjct: 330 TYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDA--------LCKAGNFGE 381
Query: 385 SPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI 444
+ +T V G +++ ++ L R ++ L + S G++ T
Sbjct: 382 AFDTLD-----VMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTY 436
Query: 445 RLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLE 504
+ ID+YG S + +AL+ F +T ++ ++ L +L K RD +A +
Sbjct: 437 IVFIDYYGKSGDSVSALETFEKMKTK----GIAPNIVACNASLYSLAKAGRDREAKQIFY 492
Query: 505 EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY- 563
+ G+VPD T++ +M ++ G+ KL S + +NG EPD + LI K
Sbjct: 493 GLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKAD 552
Query: 564 -----------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
+ L P T L L K G+ +EA + E
Sbjct: 553 RVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFE 597
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 35/199 (17%)
Query: 71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
IV L A N D AL + L S+ +FS T L L+KS R +E K L
Sbjct: 860 IVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQL------ 913
Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
F ++ +Y R + YNI+++ + K G+
Sbjct: 914 ---------FEGML-----------------DYGCRP---NCAIYNILINGFGKAGEADA 944
Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
A F++++ EG P+ +TY+V+++ L +G++D L F L + Y +++
Sbjct: 945 ACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIIN 1004
Query: 251 GFVGVERFDEAKSLLNEMR 269
G R +EA L NEM+
Sbjct: 1005 GLGKSHRLEEALVLFNEMK 1023
Score = 52.8 bits (125), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%)
Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
+Y ++ +K+G+ +EA + F ++D G PN Y ++I G+ D+A +F +
Sbjct: 893 TYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRM 952
Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
++ K Y +LV+ V R DE E+++ G P
Sbjct: 953 VKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNP 994
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/386 (20%), Positives = 143/386 (37%), Gaps = 27/386 (6%)
Query: 83 DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
D+A+S E L +N S L + K +TL + + + N
Sbjct: 730 DNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYN 789
Query: 143 LMQWYSTSGDL-ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
L+ D+ E+ + + + + +YN ++ Y K+GK E E ++++
Sbjct: 790 LLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTH 849
Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR-IKRTSKQYLILVEGFVGVERFDE 260
N+ T+ ++I LV G +D AL+++ L R T+ Y L++G R E
Sbjct: 850 ECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYE 909
Query: 261 AKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSD 319
AK L M D G P A+ + + + G A + M+ + +++ Y D
Sbjct: 910 AKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVD 969
Query: 320 DDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKV 379
R+ G+ L L +P+VV L+
Sbjct: 970 CLCMVG-------RVDEGLHYFKELKESGL-------NPDVVCY----------NLIING 1005
Query: 380 LRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
L E A F + G T D+Y ++ L G VE ++ +++ G+
Sbjct: 1006 LGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEP 1065
Query: 440 PFSTIRLIIDFYGISKKADAALKAFH 465
T +I Y +S K + A +
Sbjct: 1066 NVFTFNALIRGYSLSGKPEHAYAVYQ 1091
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 12/122 (9%)
Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
Y L+ L+K R ++A + E M+ G P+ ++ L+ F G+ LF +
Sbjct: 894 YGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMV 953
Query: 543 QNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRK 590
+ GV PD + VL+ C K L S L PD L+ L K R +
Sbjct: 954 KEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLE 1013
Query: 591 EA 592
EA
Sbjct: 1014 EA 1015
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 71/147 (48%), Gaps = 7/147 (4%)
Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPI 474
+ G + L ++ +G+R T +++D + + D L F + + P
Sbjct: 936 FGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPD 995
Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS-GIVPDVQTFSGLMYHFALQGDEKI 533
++ Y+ ++ L K R +A+ + EM S GI PD+ T++ L+ + + G +
Sbjct: 996 -----VVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEE 1050
Query: 534 VQKLFSMVRQNGVEPDAYMFKVLIQAY 560
K+++ +++ G+EP+ + F LI+ Y
Sbjct: 1051 AGKIYNEIQRAGLEPNVFTFNALIRGY 1077
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 123/608 (20%), Positives = 221/608 (36%), Gaps = 141/608 (23%)
Query: 71 IVTHALRSAPNADSALSIMEALKSN---PNFSHNQSTLHALATVLAKSQRNHELK---TL 124
I+ AL A N A ++ ++ PN LH T++ R H L L
Sbjct: 368 ILVDALCKAGNFGEAFDTLDVMRDQGILPN-------LHTYNTLICGLLRVHRLDDALEL 420
Query: 125 IGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR----------AKLLS--- 171
G++ S + ++ + +Y SGD L T+ + + + A L S
Sbjct: 421 FGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAK 480
Query: 172 ----------------------TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRT 209
+ +YN++M Y+K G+ EA++ ++++ G P+
Sbjct: 481 AGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIV 540
Query: 210 YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
+I L ++D A ++F + M++K T Y L+ G + EA L M
Sbjct: 541 VNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMV 600
Query: 270 DDGKFPGR--------------AMRVALE---RMQEMGFIQGANEFLREMLPDKRIKNVR 312
G P + +AL+ +M +MG + + F + +KN +
Sbjct: 601 QKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCV--PDVFTYNTIIFGLVKNGQ 658
Query: 313 YYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVV--SLLADAKFV 370
E + + Q+K + P + TL P VV SL+ DA +
Sbjct: 659 VKE-----------------AMCFFHQMKKLVYPDFV--TLCTLLPGVVKASLIEDAYKI 699
Query: 371 WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHG---HVELVDR 427
T +F A QP +++ + + +ILA G V +R
Sbjct: 700 IT------------------NFLYNCADQPA---NLFWEDLIGSILAEAGIDNAVSFSER 738
Query: 428 LIAK-LRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSL 486
L+A + DG + IR +S A + F D + + + L++ L
Sbjct: 739 LVANGICRDGDSILVPIIRYSCKHNNVS-GARTLFEKFTKDLGVQPKLPTYNLLI--GGL 795
Query: 487 LRTLTKCKRDFDAINVLEEMIF----SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
L D I + +++ +G +PDV T++ L+ + G + +L+ +
Sbjct: 796 LEA--------DMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMS 847
Query: 543 QNGVEPDAYMFKVLIQA-------------YCKYLSNSNLMPDAATKELLKKSLWKEGRR 589
+ E + ++I Y +S+ + P A T L L K GR
Sbjct: 848 THECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRL 907
Query: 590 KEAAAVEE 597
EA + E
Sbjct: 908 YEAKQLFE 915
Score = 36.2 bits (82), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 68/158 (43%), Gaps = 3/158 (1%)
Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
+ G D+ ++ L G V+ +L+ G+ LII+ G S + +
Sbjct: 954 KEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLE 1013
Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
AL F++ +T G + Y+SL+ L +A + E+ +G+ P+V TF
Sbjct: 1014 EALVLFNEMKTSRGITPD---LYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTF 1070
Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
+ L+ ++L G + ++ + G P+ ++ L
Sbjct: 1071 NALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 123/593 (20%), Positives = 248/593 (41%), Gaps = 46/593 (7%)
Query: 51 RSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTL 105
R +S+ SL + LD IV + + D A +++N ++ T
Sbjct: 218 RVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEAN-GLKPDEVTY 276
Query: 106 HALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQ 165
++ VL K+ R E + + ++ + + + ++ Y ++G + S R
Sbjct: 277 TSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRA 336
Query: 166 RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
+ + S +YN +++ K GK EA++ F ++ + A PN TY ++I+ L GKLD+
Sbjct: 337 KGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAA-PNLSTYNILIDMLCRAGKLDT 395
Query: 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-E 284
A E+ ++ + + I+V+ ++ DEA ++ EM P +L +
Sbjct: 396 AFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLID 455
Query: 285 RMQEMGFIQGANEFLREML-PDKRIKNVRY-------YEDGSDDDEDENDDNNSGVRIAY 336
+ ++G + A + +ML D R ++ Y + G +D + + +
Sbjct: 456 GLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSP 515
Query: 337 GVQL-KPWLDPKALANTLDEWSPEVVSLLADAKFVWTTR----LVCKVLRHFKSPETAWH 391
+QL ++D A ++ + A +FV R L+ +++ + ET
Sbjct: 516 DLQLLNTYMDCMFKAGEPEKGRAMFEEIKA-RRFVPDARSYSILIHGLIKAGFANETYEL 574
Query: 392 FFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY 451
F + + G D A ++ + G V +L+ ++++ G T +ID
Sbjct: 575 F--YSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGL 632
Query: 452 GISKKADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSG 510
+ D A F + ++ + +L +++YSSL+ K R +A +LEE++ G
Sbjct: 633 AKIDRLDEAYMLFEEAKS-----KRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKG 687
Query: 511 IVPDVQTFSGLMYHFALQGDEKIVQKL--FSMVRQNGVEPDAYMFKVLIQAYCKY----- 563
+ P++ T++ L+ AL E+I + L F +++ P+ + +LI CK
Sbjct: 688 LTPNLYTWNSLLD--ALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNK 745
Query: 564 -------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA 609
+ + P + + L K G EA A+ +R + VP A
Sbjct: 746 AFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSA 798
Score = 72.8 bits (177), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 110/484 (22%), Positives = 185/484 (38%), Gaps = 47/484 (9%)
Query: 86 LSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHE--LKTLIGDISSSKFLNVSVNFMNL 143
+ +M K P FS + + A + V NH + TL + + F L
Sbjct: 156 VQMMRKFKFRPAFSAYTTLIGAFSAV------NHSDMMLTLFQQMQELGYEPTVHLFTTL 209
Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
++ ++ G ++ LS +E + + YN+ + + K GK A + F ++ G
Sbjct: 210 IRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGL 269
Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
P+ TYT MI L +LD A+E+F L R + Y ++ G+ +FDEA S
Sbjct: 270 KPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYS 329
Query: 264 LLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDE 322
LL R G P A L +++MG + A + EM D N+ Y
Sbjct: 330 LLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDA-APNLSTY-------- 380
Query: 323 DENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF--VWTTRLVCKVL 380
+D A LD S+ F V T ++ L
Sbjct: 381 ------------------NILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRL 422
Query: 381 RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAK-LRSDGMRL 439
+ + A F + Y+ T D ++ L + G V+ ++ K L SD
Sbjct: 423 CKSQKLDEACAMFEEMDYKV-CTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTN 481
Query: 440 PFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD 498
LI +F+ +K D K + D C P L LL ++ + + K
Sbjct: 482 SIVYTSLIKNFFNHGRKEDGH-KIYKDMINQNCSP----DLQLL-NTYMDCMFKAGEPEK 535
Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
+ EE+ VPD +++S L++ G +LF +++ G D + ++I
Sbjct: 536 GRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVID 595
Query: 559 AYCK 562
+CK
Sbjct: 596 GFCK 599
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/296 (20%), Positives = 111/296 (37%), Gaps = 43/296 (14%)
Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
W P + L+ F V VLR K A +F W + H + +L +
Sbjct: 48 WGPSAENTLSALSFKPQPEFVIGVLRRLKDVNRAIEYFRWYERRTELPHCPESYNSLLLV 107
Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFST-IRLIIDFYGISKKADAA-----------LKA 463
+AR + + +D+++ ++ G +T I +++ +K + A
Sbjct: 108 MARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPA 167
Query: 464 FHDDRTLCGPISKFK---LML----------------LYSSLLRTLTKCKRDFDAINVLE 504
F TL G S +ML L+++L+R K R A+++L+
Sbjct: 168 FSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLD 227
Query: 505 EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK-- 562
EM S + D+ ++ + F G + K F + NG++PD + +I CK
Sbjct: 228 EMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKAN 287
Query: 563 ----------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
+L + +P + G+ EA ++ ER +PS+
Sbjct: 288 RLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSV 343
Score = 46.2 bits (108), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 104/531 (19%), Positives = 203/531 (38%), Gaps = 42/531 (7%)
Query: 78 SAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVS 137
SA D A S++E ++ + + + + T L K + E + ++ N+S
Sbjct: 320 SAGKFDEAYSLLERQRAKGSIP-SVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLS 378
Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
+ L+ +G L+ + ++ + + NI++ K+ K EA F +
Sbjct: 379 T-YNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEE 437
Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
+ + P+ T+ +I+ L +G++D A +V+ + + S Y L++ F R
Sbjct: 438 MDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGR 497
Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDG 317
++ + +M + P + L + F G E R M + IK R+ D
Sbjct: 498 KEDGHKIYKDMINQNCSPDLQL---LNTYMDCMFKAGEPEKGRAMFEE--IKARRFVPDA 552
Query: 318 SD-----DDEDENDDNNSGVRIAYGVQLKPW-LDPKALANTLDEWSP-----EVVSLLAD 366
+ N + Y ++ + LD +A +D + + LL +
Sbjct: 553 RSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEE 612
Query: 367 AKF------VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHG 420
K V T V L + A+ F A +V ++ + G
Sbjct: 613 MKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLF-EEAKSKRIELNVVIYSSLIDGFGKVG 671
Query: 421 HVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFKL 479
++ ++ +L G+ T ++D +++ + AL F + L C P
Sbjct: 672 RIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQ---- 727
Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
+ Y L+ L K ++ A +EM G+ P +++ ++ A G+ LF
Sbjct: 728 -VTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFD 786
Query: 540 MVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRK 590
+ NG PD+ + +I+ LSN N DA SL++E RR+
Sbjct: 787 RFKANGGVPDSACYNAMIEG----LSNGNRAMDAF-------SLFEETRRR 826
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 1/191 (0%)
Query: 83 DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
D A I+E L + N T ++L L K++ +E + K V +
Sbjct: 674 DEAYLILEELMQK-GLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGI 732
Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
L+ W E +++ ST SY ++S AK G EA F + G
Sbjct: 733 LINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANG 792
Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
+P+S Y MIE L N + A +F + +K ++L++ + ++A
Sbjct: 793 GVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKNDCLEQAA 852
Query: 263 SLLNEMRDDGK 273
+ +R+ GK
Sbjct: 853 IVGAVLRETGK 863
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 82.8 bits (203), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 108/513 (21%), Positives = 212/513 (41%), Gaps = 37/513 (7%)
Query: 71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
++T R + + ++A + E +K+ FS+++ T +AL V KS R E ++ ++
Sbjct: 285 LITCCKRGSLHQEAA-QVFEEMKA-AGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVL 342
Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
+ F V + +L+ Y+ G L+ + N+ ++ +Y ++S + + GK
Sbjct: 343 NGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVES 402
Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR--TSKQYLIL 248
A+ F ++ + G PN T+ I+ N GK +++F + + + + L+
Sbjct: 403 AMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLA 462
Query: 249 VEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREML---- 303
V G G++ E + EM+ G P R + G + A R ML
Sbjct: 463 VFGQNGMD--SEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGV 520
Query: 304 -PDKRIKNV--------RYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLD 354
PD N +E + D + Y L + + K + +
Sbjct: 521 TPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIG-LMH 579
Query: 355 EWSPEVVSLLADAKFVW--TTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
+ EV S + + + V T LVC E A+ + G++ D+ L M
Sbjct: 580 SLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSEL----KERGFSPDITTLNSM 635
Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
++I R V + ++ ++ G +T ++ Y S+ AD K+ R +
Sbjct: 636 VSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLM--YMHSRSADFG-KSEEILREILA 692
Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
K + + Y++++ + R DA + EM SGIVPDV T++ + +A +
Sbjct: 693 KGIKPDI-ISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAA---DS 748
Query: 533 IVQKLFSMVR---QNGVEPDAYMFKVLIQAYCK 562
+ ++ +VR ++G P+ + ++ YCK
Sbjct: 749 MFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCK 781
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 102/542 (18%), Positives = 209/542 (38%), Gaps = 54/542 (9%)
Query: 87 SIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQW 146
S++E +KS+ + + T + L T + + E + ++ ++ F V + L+
Sbjct: 265 SLVEKMKSD-GIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDV 323
Query: 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206
Y S + + NE S +YN ++S YA+ G EA+E Q+ ++G P+
Sbjct: 324 YGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPD 383
Query: 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266
TYT ++ GK++SA+ +F + K + ++ + +F E + +
Sbjct: 384 VFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFD 443
Query: 267 EMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM-----LPDKRIKNV---RYYEDG 317
E+ G P L + G + +EM +P++ N Y G
Sbjct: 444 EINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCG 503
Query: 318 SDDDEDENDDNNSGVRIAYGVQLKPWLDP---------KALA-NTLDEWSPEVVSLLADA 367
S + Y L + P ALA + E S +V++ + D
Sbjct: 504 SFEQ----------AMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDG 553
Query: 368 KFVWTTRLVCKVLRHFKSPETA--WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELV 425
+ C +L + + + H Y L+ ++ + ++ +
Sbjct: 554 RCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEA 613
Query: 426 DRLIAKLRSDGMRLPFSTIRLIIDFYG---ISKKADAALKAFHDDRTLCGPISKFKLMLL 482
+R ++L+ G +T+ ++ YG + KA+ L + +R M
Sbjct: 614 ERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLD-YMKERGFT------PSMAT 666
Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
Y+SL+ ++ + +L E++ GI PD+ +++ ++Y + + ++FS +R
Sbjct: 667 YNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMR 726
Query: 543 QNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRK 590
+G+ PD + I +Y +Y+ P+ T + K R+
Sbjct: 727 NSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKD 786
Query: 591 EA 592
EA
Sbjct: 787 EA 788
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 89/209 (42%), Gaps = 7/209 (3%)
Query: 80 PNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN 139
P A+ A S ++ FS + +TL+++ ++ + Q + ++ + F
Sbjct: 611 PEAERAFSELKER----GFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMAT 666
Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
+ +LM +S S D E + SYN V+ Y + + +A F ++
Sbjct: 667 YNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMR 726
Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
+ G +P+ TY I + A+ V + + Y +V+G+ + R D
Sbjct: 727 NSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKD 786
Query: 260 EAKSLLNEMRD-DGKFP-GRAMRVALERM 286
EAK + ++R+ D P G +R+ LER+
Sbjct: 787 EAKLFVEDLRNLDPHAPKGEDLRL-LERI 814
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/228 (20%), Positives = 86/228 (37%), Gaps = 29/228 (12%)
Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS----KK 456
G++ DVY+ +++ A G + K+ DG + T +I++ +G K
Sbjct: 203 GFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNK 262
Query: 457 ADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDF---DAINVLEEMIFSGIVP 513
+ ++ D + Y++L+ T CKR +A V EEM +G
Sbjct: 263 ITSLVEKMKSDGIAPDAYT-------YNTLI---TCCKRGSLHQEAAQVFEEMKAAGFSY 312
Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK----------- 562
D T++ L+ + K K+ + + NG P + LI AY +
Sbjct: 313 DKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELK 372
Query: 563 -YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA 609
++ PD T L + G+ + A ++ E P++
Sbjct: 373 NQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNIC 420
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
G + + +N ++ L SY ++S +A +G+ EAV F+++ ++G P TY
Sbjct: 187 GRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITY 246
Query: 211 TVMIEHLVNLG 221
V++ +G
Sbjct: 247 NVILNVFGKMG 257
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 82.8 bits (203), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 108/548 (19%), Positives = 218/548 (39%), Gaps = 76/548 (13%)
Query: 75 ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFL 134
+LRS P+ +AL + PNFS + + L +S ++K ++ D+ SS+
Sbjct: 56 SLRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCE 115
Query: 135 NVSVNFMNLMQWYSTSGDLELVLST--W-----------NEYRQRAKLL----------- 170
+ F+ L++ Y+ + +LS W + Y + LL
Sbjct: 116 MGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEI 175
Query: 171 ------------STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
++N+++ + + A+ + G +P+ +T+T +++ +
Sbjct: 176 SHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYI 235
Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD-DGKFPGR 277
G LD AL + + ++ ++V GF R ++A + + EM + DG FP +
Sbjct: 236 EEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQ 295
Query: 278 -AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGV---- 332
+ + + G ++ A E + ML ++G D D + SG+
Sbjct: 296 YTFNTLVNGLCKAGHVKHAIEIMDVML-----------QEGYDPDVYTYNSVISGLCKLG 344
Query: 333 RIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL------------VC--- 377
+ V++ + + + ++ + +L + + T L VC
Sbjct: 345 EVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFN 404
Query: 378 ---KVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
+ L ++ A F + + G D + ++ L G ++ ++ ++
Sbjct: 405 SLIQGLCLTRNHRVAMELFEEMRSK-GCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMEL 463
Query: 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCK 494
G T +ID + + K A + F D+ + G +S+ + Y++L+ L K +
Sbjct: 464 SGCARSVITYNTLIDGFCKANKTREAEEIF-DEMEVHG-VSRNSVT--YNTLIDGLCKSR 519
Query: 495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK 554
R DA ++++MI G PD T++ L+ HF GD K + + NG EPD +
Sbjct: 520 RVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYG 579
Query: 555 VLIQAYCK 562
LI CK
Sbjct: 580 TLISGLCK 587
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 44/243 (18%)
Query: 395 WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF---- 450
W+ + G D + +ML +L ++LV+ AK+ G++ ST ++I
Sbjct: 143 WMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRA 202
Query: 451 ---------------YGI---SKKADAALKAFHDDRTLCGPISKFKLMLLYSS------- 485
YG+ K ++ + ++ L G + + M+ +
Sbjct: 203 HQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSV 262
Query: 486 --LLRTLTKCKRDFDAINVLEEMIFS-GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
++ K R DA+N ++EM G PD TF+ L+ G K ++ ++
Sbjct: 263 NVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVML 322
Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
Q G +PD Y + +I CK + + P+ T L +L KE + +
Sbjct: 323 QEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVE 382
Query: 591 EAA 593
EA
Sbjct: 383 EAT 385
Score = 41.2 bits (95), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 52/261 (19%), Positives = 98/261 (37%), Gaps = 45/261 (17%)
Query: 380 LRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
LR A F + +P ++ + E++L L R G + + +++ ++S +
Sbjct: 57 LRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEM 116
Query: 440 PFSTIRLIIDFYGISKKADAALKA--FHDDRTLCGPISKFKLMLL--------------- 482
ST ++I+ Y + D L + D P + F +L
Sbjct: 117 GTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEIS 176
Query: 483 ---------------YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
++ L++ L + + AI +LE+M G+VPD +TF+ +M +
Sbjct: 177 HAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIE 236
Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSN-LMPDAA 574
+GD ++ + + G V++ +CK +SN + PD
Sbjct: 237 EGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQY 296
Query: 575 TKELLKKSLWKEGRRKEAAAV 595
T L L K G K A +
Sbjct: 297 TFNTLVNGLCKAGHVKHAIEI 317
Score = 38.1 bits (87), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 43/99 (43%)
Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
+YN ++ K+ + +A + Q+I EG P+ TY ++ H G + A ++ A+
Sbjct: 507 TYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAM 566
Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
+ Y L+ G R + A LL ++ G
Sbjct: 567 TSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKG 605
>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
Length = 874
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 116/523 (22%), Positives = 215/523 (41%), Gaps = 46/523 (8%)
Query: 60 SLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNH 119
+L ++++ IV+ R N DS ++E ++ + T ++ + L K +
Sbjct: 212 GVLPNKVIYNTIVSSFCREGRNDDSE-KMVEKMREE-GLVPDIVTFNSRISALCKEGKVL 269
Query: 120 ELKTLIGDISSSKFLNV----SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
+ + D+ ++L + S+ + +++ + G LE + + R+ L S +SY
Sbjct: 270 DASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSY 329
Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
NI + + GK EA +Q+ D+G P+ +Y ++++ L LG L A + +
Sbjct: 330 NIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKR 389
Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQG 294
+ + Y L+ G+ V + D AKSLL EM + P + L + +MG I
Sbjct: 390 NGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISE 449
Query: 295 ANEFLREMLPDKRIKNVRYYEDGSD--------DDEDENDDNNSGVRIAYGVQLKPWLDP 346
A E LR+M N + Y G D D + + + + I G+++
Sbjct: 450 AEELLRKM-------NEKGY--GLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVH---GS 497
Query: 347 KALANTLDEWSPEVVSLLADAK-----FVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQ 399
AL N + + V L + ++T L +CK R F + + Q
Sbjct: 498 AALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGR-FAEAKNLFAEMMGEKLQ 556
Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
P D A + + G + R++ + G T +I GI K
Sbjct: 557 P----DSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGI-KNQIF 611
Query: 460 ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
+ D+ G + Y++ ++ L + ++ DA N+L+EM+ I P+V +F
Sbjct: 612 EIHGLMDEMKEKGISPN---ICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFK 668
Query: 520 GLMYHFALQGDEKIVQKLF-SMVRQNGVEPDAY--MFKVLIQA 559
L+ F D + Q++F + V G + Y MF L+ A
Sbjct: 669 YLIEAFCKVPDFDMAQEVFETAVSICGQKEGLYSLMFNELLAA 711
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 96/224 (42%), Gaps = 27/224 (12%)
Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD---GMRLPFSTIRLIIDFYGISK 455
+ G D+ ++ L + G V R+ + + D G+ P S Y +
Sbjct: 245 EEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSIT------YNLML 298
Query: 456 KADAALKAFHDDRTLCGPISK---FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV 512
K + D +TL I + + Y+ L+ L + + +A VL++M GI
Sbjct: 299 KGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIG 358
Query: 513 PDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC----------- 561
P + +++ LM G + + ++++NGV PDA + L+ YC
Sbjct: 359 PSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSL 418
Query: 562 -KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND 604
+ + +N +P+A T +L SLWK GR EA EE K+N+
Sbjct: 419 LQEMMRNNCLPNAYTCNILLHSLWKMGRISEA---EELLRKMNE 459
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 89/436 (20%), Positives = 166/436 (38%), Gaps = 93/436 (21%)
Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
F L++ Y +G + L N L + YN ++S + + G+N ++ + ++
Sbjct: 185 FGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMR 244
Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL---MRIKR-TSKQYLILVEGFVGV 255
+EG +P+ T+ I L GK+ A +FS + L + + R S Y ++++GF V
Sbjct: 245 EEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKV 304
Query: 256 ERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
++AK+L +R++ ++ + L+ + G A L++M DK I Y
Sbjct: 305 GLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQM-TDKGIGPSIY- 362
Query: 315 EDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTR 374
+Y + + + +L+DAK +
Sbjct: 363 --------------------SYNILMDGLCK---------------LGMLSDAKTI---- 383
Query: 375 LVCKVLRHFKSPETA-----WHFFCWVA------------YQPGYTHDVYALEKMLTILA 417
V + R+ P+ H +C V + + Y +L L
Sbjct: 384 -VGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLW 442
Query: 418 RHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALK--------------- 462
+ G + + L+ K+ G L T +I+D S + D A++
Sbjct: 443 KMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGN 502
Query: 463 ------AFHDDRTL---CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP 513
DD + C P ++ YS+LL L K R +A N+ EM+ + P
Sbjct: 503 LGNSYIGLVDDSLIENNCLPD-----LITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQP 557
Query: 514 DVQTFSGLMYHFALQG 529
D ++ ++HF QG
Sbjct: 558 DSVAYNIFIHHFCKQG 573
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 107/252 (42%), Gaps = 22/252 (8%)
Query: 375 LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI---LAR---HGHVELVDRL 428
LV +L++ +P AW F + P +L+ TI L R H ++ + L
Sbjct: 5 LVKALLKNTNNPRLAWRIFKRIFSSPSEESHGISLDATPTIARILVRAKMHEEIQELHNL 64
Query: 429 IAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLR 488
I L S + S++ ++ + S D A F R+ P +K + L Y+ LL
Sbjct: 65 I--LSSSIQKTKLSSLLSVVSIFAKSNHIDKAFPQFQLVRSRF-PENKPSVYL-YNLLLE 120
Query: 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548
+ K +R + ++M+ GI P TF+ L+ ++LF + + G +P
Sbjct: 121 SCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKP 180
Query: 549 DAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVE 596
+ + F +L++ YCK + + ++P+ + S +EGR ++ +
Sbjct: 181 NEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMV 240
Query: 597 ERCEKINDVPSL 608
E+ + VP +
Sbjct: 241 EKMREEGLVPDI 252
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 117/559 (20%), Positives = 220/559 (39%), Gaps = 57/559 (10%)
Query: 71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHA---LATVLAKSQRNHELKTLIGD 127
+V L++ N A I + + S+P+ + +L A +A +L +++ + E++ L
Sbjct: 5 LVKALLKNTNNPRLAWRIFKRIFSSPSEESHGISLDATPTIARILVRAKMHEEIQELHNL 64
Query: 128 ISSSKFLNVSVN-FMNLMQWYSTSGDLELVLSTWNEYRQR--AKLLSTESYNIVMSVYAK 184
I SS ++ ++++ ++ S ++ + R R S YN+++ K
Sbjct: 65 ILSSSIQKTKLSSLLSVVSIFAKSNHIDKAFPQFQLVRSRFPENKPSVYLYNLLLESCIK 124
Query: 185 TGKNFEAVE-TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
+ E V ++ ++ G P + T+ ++I L + +D+A E+F +P K
Sbjct: 125 E-RRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEF 183
Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-----------------RVALERM 286
+ ILV G+ D+ LLN M G P + + +E+M
Sbjct: 184 TFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKM 243
Query: 287 QEMGFIQGA---NEFLREMLPDKRIKNV-RYYEDGSDDDEDENDDNNSGVRIAYGVQLKP 342
+E G + N + + + ++ + R + D D+ NS I Y + LK
Sbjct: 244 REEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNS---ITYNLMLKG 300
Query: 343 WL------DPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRH--FKSPETAWHFFC 394
+ D K L ++ E + ++ SL + +W LV RH F ET
Sbjct: 301 FCKVGLLEDAKTLFESIRE-NDDLASL--QSYNIWLQGLV----RHGKFIEAETVLKQM- 352
Query: 395 WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS 454
G +Y+ ++ L + G + ++ ++ +G+ T ++ Y
Sbjct: 353 ---TDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSV 409
Query: 455 KKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP 513
K DAA + R C P + +LL+S L K R +A +L +M G
Sbjct: 410 GKVDAAKSLLQEMMRNNCLPNAYTCNILLHS-----LWKMGRISEAEELLRKMNEKGYGL 464
Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDA 573
D T + ++ G+ ++ +R +G + I L +N +PD
Sbjct: 465 DTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDL 524
Query: 574 ATKELLKKSLWKEGRRKEA 592
T L L K GR EA
Sbjct: 525 ITYSTLLNGLCKAGRFAEA 543
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 68/159 (42%), Gaps = 6/159 (3%)
Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
D+ +L L + G L A++ + ++ + I + K +A +
Sbjct: 523 DLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVL 582
Query: 465 HD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
D ++ C K + Y+SL+ L + F+ +++EM GI P++ T++ +
Sbjct: 583 KDMEKKGC-----HKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQ 637
Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
+ + L + Q + P+ + FK LI+A+CK
Sbjct: 638 YLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCK 676
Score = 40.0 bits (92), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 88/226 (38%), Gaps = 22/226 (9%)
Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
P VY +L + VE V L + G+ T L+I S DA
Sbjct: 106 PENKPSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDA 165
Query: 460 ALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
A + F + C P ++F + L+R K + +L M G++P+ +
Sbjct: 166 ARELFDEMPEKGCKP-NEFT----FGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIY 220
Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC---KYLSNSNLM----- 570
+ ++ F +G +K+ +R+ G+ PD F I A C K L S +
Sbjct: 221 NTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMEL 280
Query: 571 --------PDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
P++ T L+ K K G ++A + E + +D+ SL
Sbjct: 281 DEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASL 326
Score = 32.7 bits (73), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 1/123 (0%)
Query: 210 YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
Y++M L+ G+L A E+ A+ + + Y LVE + + A +L++M
Sbjct: 701 YSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVESLCKKDELEVASGILHKMI 760
Query: 270 DDG-KFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDN 328
D G F A+ ++ + +MG + AN F +M+ + V D + D + N
Sbjct: 761 DRGYGFDPAALMPVIDGLGKMGNKKEANSFADKMMEMASVGEVANKVDPNARDIHQKKHN 820
Query: 329 NSG 331
+G
Sbjct: 821 KNG 823
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 111/477 (23%), Positives = 181/477 (37%), Gaps = 116/477 (24%)
Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAI-PNSRTYTVMIEHLVNLGKLDSALEVFSA 232
+YN+++S Y K G+ A+ V+D ++ P+ TY ++ L + GKL A+EV
Sbjct: 174 TYNVMISGYCKAGEINNAL----SVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDR 229
Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGF 291
+ Y IL+E A LL+EMRD G P V + + + G
Sbjct: 230 MLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGR 289
Query: 292 IQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKP------WLD 345
+ A +FL +M NV I + + L+ W+D
Sbjct: 290 LDEAIKFLNDMPSSGCQPNV----------------------ITHNIILRSMCSTGRWMD 327
Query: 346 P-KALANTLDE-WSPEVVSLLADAKFVWTTRLVCKVL-------RHFKSPETA-----WH 391
K LA+ L + +SP VV+ F+ L+ + + +H P + H
Sbjct: 328 AEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLH 387
Query: 392 FFC-------WVAY-----QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439
FC + Y G D+ MLT L + G VE ++ +L S G
Sbjct: 388 GFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKG--- 444
Query: 440 PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDA 499
C P+ ++ Y++++ L K + A
Sbjct: 445 -------------------------------CSPV-----LITYNTVIDGLAKAGKTGKA 468
Query: 500 INVLEEMIFSGIVPDVQTFSGLMYHFALQG--DEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
I +L+EM + PD T+S L+ + +G DE I K F + G+ P+A F ++
Sbjct: 469 IKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAI--KFFHEFERMGIRPNAVTFNSIM 526
Query: 558 QAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRKEA-AAVEERCEK 601
CK ++ N P+ + +L + L EG KEA + E C K
Sbjct: 527 LGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNK 583
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
LR + + + LE M++ G VPD+ + L+ F G + K+ ++ +G
Sbjct: 109 LRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGA 168
Query: 547 EPDAYMFKVLIQAYCK---------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
PD + V+I YCK L ++ PD T + +SL G+ K+A V +
Sbjct: 169 VPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLD 228
Query: 598 R 598
R
Sbjct: 229 R 229
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 90/216 (41%), Gaps = 12/216 (5%)
Query: 62 LNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSN---PNFSHNQSTLHALATVLA 113
+ DR P +VT+ + D A+ + + S+ PN + L ++ +
Sbjct: 265 MRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCS--- 321
Query: 114 KSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE 173
+ R + + L+ D+ F V F L+ + G L + + Q ++
Sbjct: 322 -TGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSL 380
Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
SYN ++ + K K A+E +++ G P+ TY M+ L GK++ A+E+ + L
Sbjct: 381 SYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQL 440
Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269
Y +++G + +A LL+EMR
Sbjct: 441 SSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMR 476
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 83/199 (41%), Gaps = 1/199 (0%)
Query: 74 HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKF 133
H D A+ +E + S + + T + + T L K + + ++ +SS
Sbjct: 387 HGFCKEKKMDRAIEYLERMVSRGCYP-DIVTYNTMLTALCKDGKVEDAVEILNQLSSKGC 445
Query: 134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE 193
V + + ++ + +G + +E R + T +Y+ ++ ++ GK EA++
Sbjct: 446 SPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIK 505
Query: 194 TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
F + G PN+ T+ ++ L + D A++ + K Y IL+EG
Sbjct: 506 FFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLA 565
Query: 254 GVERFDEAKSLLNEMRDDG 272
EA LLNE+ + G
Sbjct: 566 YEGMAKEALELLNELCNKG 584
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 21/147 (14%)
Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
++ Y+ ++ K +A++VL+ M S PDV T++ ++ G K ++
Sbjct: 172 VITYNVMISGYCKAGEINNALSVLDRMSVS---PDVVTYNTILRSLCDSGKLKQAMEVLD 228
Query: 540 MVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEG 587
+ Q PD + +LI+A C+ + + PD T +L + KEG
Sbjct: 229 RMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEG 288
Query: 588 RRKEAAAVEERCEKINDVPSLALRGHI 614
R EA +ND+PS + ++
Sbjct: 289 RLDEAIKF------LNDMPSSGCQPNV 309
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 59/138 (42%)
Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
V + L+ G L+ + N+ + ++NI++ TG+ +A +
Sbjct: 275 VTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLAD 334
Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
++ +G P+ T+ ++I L G L A+++ +P + S Y L+ GF ++
Sbjct: 335 MLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKK 394
Query: 258 FDEAKSLLNEMRDDGKFP 275
D A L M G +P
Sbjct: 395 MDRAIEYLERMVSRGCYP 412
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 72/166 (43%), Gaps = 1/166 (0%)
Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
V + ++ G +E + N+ + +YN V+ AK GK +A++ +
Sbjct: 415 VTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDE 474
Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
+ + P++ TY+ ++ L GK+D A++ F M I+ + + ++ G +
Sbjct: 475 MRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQ 534
Query: 258 FDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREM 302
D A L M + G P + + +E + G + A E L E+
Sbjct: 535 TDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNEL 580
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 107/444 (24%), Positives = 184/444 (41%), Gaps = 40/444 (9%)
Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
+ +L+ Y DL+ +NE + + +Y ++ + EA++ F ++
Sbjct: 256 YTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMK 315
Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
D+ P RTYTV+I+ L + AL + + IK Y +L++ +F+
Sbjct: 316 DDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFE 375
Query: 260 EAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGS 318
+A+ LL +M + G P AL + G I+ A + + M K N R Y
Sbjct: 376 KARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTY---- 431
Query: 319 DDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLD--------------EWSPEVVSLL 364
+E S V A GV L L+ K L + + + + ++SL+
Sbjct: 432 --NELIKGYCKSNVHKAMGV-LNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLM 488
Query: 365 ADAKFV---WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGH 421
D V WT + L K E A F + Q G +V ++ + G
Sbjct: 489 NDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLE-QKGVNPNVVMYTALIDGYCKAGK 547
Query: 422 VELVDRLIAKLRSDGMRLPFS-TIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM 480
V+ ++ K+ S LP S T +I +G+ AD LK + L + K L
Sbjct: 548 VDEAHLMLEKMLSKNC-LPNSLTFNALI--HGLC--ADGKLK---EATLLEEKMVKIGLQ 599
Query: 481 LLYSS---LLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
S+ L+ L K DFD A + ++M+ SG PD T++ + + +G +
Sbjct: 600 PTVSTDTILIHRLLK-DGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAED 658
Query: 537 LFSMVRQNGVEPDAYMFKVLIQAY 560
+ + +R+NGV PD + + LI+ Y
Sbjct: 659 MMAKMRENGVSPDLFTYSSLIKGY 682
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 100/432 (23%), Positives = 169/432 (39%), Gaps = 45/432 (10%)
Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
+YN +++ Y K G EA + ++++ G P+ TYT +I LDSA +VF+ +
Sbjct: 220 TYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEM 279
Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFI 292
PL +R Y L+ G R DEA L +M+DD FP R V ++ +
Sbjct: 280 PLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERK 339
Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDP-----K 347
A ++EM N+ Y D + + R G L+ L P
Sbjct: 340 SEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKA--RELLGQMLEKGLMPNVITYN 397
Query: 348 ALAN-----TLDEWSPEVVSLLADAKFVWTTRLVCKVLRHF-KSPETAWHFFCWVAYQPG 401
AL N + E + +VV L+ K TR ++++ + KS +
Sbjct: 398 ALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERK 457
Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL 461
DV ++ R G+ + RL++ + G+ T +ID SK+ + A
Sbjct: 458 VLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEAC 517
Query: 462 KAFH------------------DDRTLCGPISKFKLM-------------LLYSSLLRTL 490
F D G + + LM L +++L+ L
Sbjct: 518 DLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGL 577
Query: 491 TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA 550
+ +A + E+M+ G+ P V T + L++ GD F + +G +PDA
Sbjct: 578 CADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDA 637
Query: 551 YMFKVLIQAYCK 562
+ + IQ YC+
Sbjct: 638 HTYTTFIQTYCR 649
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 112/594 (18%), Positives = 222/594 (37%), Gaps = 70/594 (11%)
Query: 40 AQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKS 94
LI + +A R + + L + D P + T+ +L + AL++++ ++
Sbjct: 292 THLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEE 351
Query: 95 NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154
N T L L + + + L+G + + + + L+ Y G +E
Sbjct: 352 T-GIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIE 410
Query: 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214
+ R +T +YN ++ Y K+ + +A+ ++++ +P+ TY +I
Sbjct: 411 DAVDVVELMESRKLSPNTRTYNELIKGYCKSNVH-KAMGVLNKMLERKVLPDVVTYNSLI 469
Query: 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274
+ G DSA + S + + Y +++ +R +EA L + + G
Sbjct: 470 DGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVN 529
Query: 275 PGRAMRVAL-ERMQEMGFIQGANEFLREM-----LPDKRIKNVRYYEDGSDDDEDENDDN 328
P M AL + + G + A+ L +M LP+ N + +D E
Sbjct: 530 PNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKE---- 585
Query: 329 NSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPET 388
+ +K L P +T+ + LL D F +
Sbjct: 586 ---ATLLEEKMVKIGLQPTVSTDTI-----LIHRLLKDGDF-----------------DH 620
Query: 389 AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII 448
A+ F G D + + R G + + ++AK+R +G+ T +I
Sbjct: 621 AYSRF-QQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLI 679
Query: 449 DFYGISKKADAALKAFHDDR-TLCGPISKFKLMLLYSSLLRTLTKCK------------R 495
YG + + A R T C P L L+ L K K
Sbjct: 680 KGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMM 739
Query: 496 DFDA-INVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS-MVRQNGVEPDAYMF 553
+FD + +LE+M+ + P+ +++ L+ G+ ++ +K+F M R G+ P +F
Sbjct: 740 EFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVF 799
Query: 554 KVLIQAYCKYLSNSNL------------MPDAATKELLKKSLWKEGRRKEAAAV 595
L+ CK ++ +P + ++L L+K+G ++ +V
Sbjct: 800 NALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSV 853
Score = 62.4 bits (150), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 112/558 (20%), Positives = 212/558 (37%), Gaps = 91/558 (16%)
Query: 84 SALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNL 143
+AL+ + NP + H+ + +L T+L + +G + + L +
Sbjct: 105 TALNFSHWISQNPRYKHSVYSYASLLTLLINN-------GYVGVVFKIRLL--------M 149
Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKL-----LSTESYNIVMSVYAKTGKNFEAVETFRQV 198
++ + GD VL + + + L YN +++ A+ G E + + ++
Sbjct: 150 IKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEM 209
Query: 199 IDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258
+++ PN TY M+ LG ++ A + S + + Y L+ G+ +
Sbjct: 210 LEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDL 269
Query: 259 DEAKSLLNEMRDDGKFPGRAMRVALERMQEMGF-----IQGANEFLREMLPDKRIKNVRY 313
D A + NEM G R VA + G I A + +M D+ VR
Sbjct: 270 DSAFKVFNEMPLKG---CRRNEVAYTHLIH-GLCVARRIDEAMDLFVKMKDDECFPTVRT 325
Query: 314 YE------DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADA 367
Y GS+ R + + L ++ + + ++ + SL +
Sbjct: 326 YTVLIKSLCGSE-------------RKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQC 372
Query: 368 KFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDR 427
KF L+ ++L + G +V ++ + G +E
Sbjct: 373 KFEKARELLGQML------------------EKGLMPNVITYNALINGYCKRGMIEDAVD 414
Query: 428 LIAKLRSDGMRLPFSTIRLIIDFYGISK--KADAALKAFHDDRTLCGPISKFKLMLLYSS 485
++ + S + T +I Y S KA L + + L ++ Y+S
Sbjct: 415 VVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVT-------YNS 467
Query: 486 LLRTLTKCKR-DFD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
L+ +C+ +FD A +L M G+VPD T++ ++ + LF + Q
Sbjct: 468 LIDG--QCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQ 525
Query: 544 NGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKE 591
GV P+ M+ LI YCK + + N +P++ T L L +G+ KE
Sbjct: 526 KGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKE 585
Query: 592 AAAVEERCEKINDVPSLA 609
A +EE+ KI P+++
Sbjct: 586 ATLLEEKMVKIGLQPTVS 603
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 89/185 (48%), Gaps = 30/185 (16%)
Query: 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR 445
P+TA +F W++ P Y H VY+ +LT+L +G+V +V + IR
Sbjct: 103 PKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFK----------------IR 146
Query: 446 LIIDFYGISKKADAALKAFHDDRTLCGPIS-------KFKLML-LYSSLLRTLTKCKRDF 497
L+ + K D+ A + LC ++ K+KL++ Y++LL +L +
Sbjct: 147 LL-----MIKSCDSVGDALY-VLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVD 200
Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
+ V EM+ + P++ T++ ++ + G+ + + S + + G++PD + + LI
Sbjct: 201 EMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLI 260
Query: 558 QAYCK 562
YC+
Sbjct: 261 MGYCQ 265
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 100/497 (20%), Positives = 197/497 (39%), Gaps = 69/497 (13%)
Query: 86 LSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQ 145
L +++ ++S ++ T + + A+ E K ++ S + +V + L+Q
Sbjct: 266 LGVLDEMRSK-GLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQ 324
Query: 146 WYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP 205
+ +G LS E + + + +YN +++ Y + G + EA + +G +P
Sbjct: 325 VFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMP 384
Query: 206 NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL 265
N+ TYT +I+ GK D AL++F ++ + Y ++ R +E +L
Sbjct: 385 NAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKML 444
Query: 266 NEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREML-----PDKRIKNVRYYEDGSD 319
+M+ +G P RA L G + N REM PD+ N G
Sbjct: 445 CDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRC 504
Query: 320 DDE-DENDDNNSGVRIAYGVQLKPWLDPKALANTL---DEW-SPEVVSLLADAKFVWTTR 374
E D + R + + + AL N L +W S E V ++D K
Sbjct: 505 GSEVDASKMYGEMTRAGFNACVTTY---NALLNALARKGDWRSGENV--ISDMKS----- 554
Query: 375 LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
+ FK ET++ ML A+ G+ ++R+ +++
Sbjct: 555 ------KGFKPTETSYSL-------------------MLQCYAKGGNYLGIERIENRIKE 589
Query: 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL---------MLLYSS 485
+ + +R + L A R L G F L M++++S
Sbjct: 590 GQIFPSWMLLRTL-------------LLANFKCRALAGSERAFTLFKKHGYKPDMVIFNS 636
Query: 486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
+L T+ A +LE + G+ PD+ T++ LM + +G+ +++ + ++
Sbjct: 637 MLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQ 696
Query: 546 VEPDAYMFKVLIQAYCK 562
++PD + +I+ +C+
Sbjct: 697 LKPDLVSYNTVIKGFCR 713
Score = 70.1 bits (170), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 102/496 (20%), Positives = 193/496 (38%), Gaps = 67/496 (13%)
Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
T +AL V K+ E +++ ++ + SV + L+ Y +G +
Sbjct: 318 TYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMM 377
Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
++ + + +Y V+ Y K GK EA++ F + + G +PN+ TY ++ L GK
Sbjct: 378 TKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLL---GKK 434
Query: 224 DSALEVFSALPLMR-----IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR- 277
+ E+ L M+ R + ++ + G G+++F + EM+ G P R
Sbjct: 435 SRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKF--VNRVFREMKSCGFEPDRD 492
Query: 278 AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE-------------DGSDDDEDE 324
+ G A++ EM V Y G + D
Sbjct: 493 TFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDM 552
Query: 325 NDDNNSGVRIAYGVQLKPW------LDPKALANTLDE------WSPEVVSLLADAKFVWT 372
+Y + L+ + L + + N + E W LLA+ K
Sbjct: 553 KSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFK---- 608
Query: 373 TRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKL 432
C+ L E A+ F + GY D+ ML+I R+ + + ++ +
Sbjct: 609 ----CRAL---AGSERAFTLF----KKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESI 657
Query: 433 RSDGMRLPFSTIRLIIDFY---GISKKADAALKAFHDDRTLCGPISKFKLMLL-YSSLLR 488
R DG+ T ++D Y G KA+ LK S+ K L+ Y+++++
Sbjct: 658 REDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEK--------SQLKPDLVSYNTVIK 709
Query: 489 TLTKCKRDF--DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
C+R +A+ +L EM GI P + T++ + + G ++ + + +N
Sbjct: 710 GF--CRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDC 767
Query: 547 EPDAYMFKVLIQAYCK 562
P+ FK+++ YC+
Sbjct: 768 RPNELTFKMVVDGYCR 783
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 81/408 (19%), Positives = 159/408 (38%), Gaps = 55/408 (13%)
Query: 169 LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALE 228
LL +Y ++ Y++TGK +A++ F ++ + G P TY V+++ +G+ S +
Sbjct: 207 LLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGR--SWRK 264
Query: 229 VFSALPLMRIKRTSKQYLILVEGFVGVER---FDEAKSLLNEMRDDGKFPGRAMRVA-LE 284
+ L MR K R EAK E++ G PG A L+
Sbjct: 265 ILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQ 324
Query: 285 RMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGS--DDDEDENDDNNSGVRIAYGVQLKP 342
+ G A L+EM E+ S D N+ + VR +
Sbjct: 325 VFGKAGVYTEALSVLKEM------------EENSCPADSVTYNELVAAYVRAGFS----- 367
Query: 343 WLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGY 402
K A ++ + + V + +A +TT V + A F + + G
Sbjct: 368 ----KEAAGVIEMMTKKGV--MPNA-ITYTT--VIDAYGKAGKEDEALKLF-YSMKEAGC 417
Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGM---RLPFSTIRLIIDFYGISKKADA 459
+ +L++L + + +++ ++S+G R ++T+ + G+ K +
Sbjct: 418 VPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNR 477
Query: 460 ALK-----AFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
+ F DR +++L+ +C + DA + EM +G
Sbjct: 478 VFREMKSCGFEPDRD------------TFNTLISAYGRCGSEVDASKMYGEMTRAGFNAC 525
Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
V T++ L+ A +GD + + + S ++ G +P + +++Q Y K
Sbjct: 526 VTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAK 573
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/210 (19%), Positives = 86/210 (40%), Gaps = 13/210 (6%)
Query: 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
V A A D AL + ++K N T +A+ ++L K R++E+ ++ D+ S+
Sbjct: 392 VIDAYGKAGKEDEALKLFYSMK-EAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSN 450
Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
+ ++ G + V + E + +++N ++S Y + G +A
Sbjct: 451 GCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDA 510
Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE- 250
+ + ++ G TY ++ L G S V S + K T Y ++++
Sbjct: 511 SKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQC 570
Query: 251 -----GFVGVERFDEAKSLLNEMRDDGKFP 275
++G+ER + N +++ FP
Sbjct: 571 YAKGGNYLGIERIE------NRIKEGQIFP 594
Score = 41.6 bits (96), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 88/216 (40%), Gaps = 17/216 (7%)
Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
D +E + IL R + +L+ K+ L I+ Y + K + A+ F
Sbjct: 174 DHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLF 233
Query: 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAI-NVLEEMIFSGIVPDVQTFSGLMY 523
+ + GP ++ Y+ +L K R + I VL+EM G+ D T S ++
Sbjct: 234 ERMKEM-GPSPT---LVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLS 289
Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMP 571
A +G + ++ F+ ++ G EP + L+Q + K + ++
Sbjct: 290 ACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPA 349
Query: 572 DAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPS 607
D+ T L + + G KEAA V E K +P+
Sbjct: 350 DSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPN 385
Score = 38.1 bits (87), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 138 VNFMNLMQWYSTSGDL---ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194
V + +LM Y G+ E +L T + + + L+S YN V+ + + G EAV
Sbjct: 667 VTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVS---YNTVIKGFCRRGLMQEAVRM 723
Query: 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254
++ + G P TY + +G +V + + + ++V+G+
Sbjct: 724 LSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMVVDGYCR 783
Query: 255 VERFDEAKSLLNEMR------DDGKFPGRAMRV 281
++ EA +++++ DD A+RV
Sbjct: 784 AGKYSEAMDFVSKIKTFDPCFDDQSIQRLALRV 816
>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840
OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2
Length = 1096
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 91/466 (19%), Positives = 171/466 (36%), Gaps = 77/466 (16%)
Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
+YN +++ ++ GK A + +++ G PN T+ +I+ ++ G AL++F +
Sbjct: 300 TYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMM 359
Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFI 292
+ + Y +L++G FD A+ M+ +G GR + + + + GF+
Sbjct: 360 EAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFL 419
Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
A L EM +DG D D
Sbjct: 420 DEAVVLLNEM-----------SKDGIDPD------------------------------- 437
Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPE-----TAWHFFCWVA--------YQ 399
+ +S + +F +VC++ R SP T + C + Y+
Sbjct: 438 IVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYE 497
Query: 400 P----GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455
G+T D + ++T L + G V + + + SDG+ + +I+ YG S
Sbjct: 498 AMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSG 557
Query: 456 KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
+ A F D+ T G F Y SLL+ L K +A L+ + D
Sbjct: 558 EGLKAFSVF-DEMTKVGHHPTF---FTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDT 613
Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------- 562
++ L+ G+ LF + Q + PD+Y + LI C+
Sbjct: 614 VMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKE 673
Query: 563 YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
+ N++P+ ++K G+ K E+ + + P +
Sbjct: 674 AEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDI 719
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 4/223 (1%)
Query: 97 NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
S ++ T A+ +VL ++ R E + ++ ++S S ++ L+ GD++
Sbjct: 854 GISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTA 913
Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
E + + ++ AK GK EA R ++ +P ++T ++
Sbjct: 914 FVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHL 973
Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
G + ALE+ + +K Y +L+ G A L EM+ DG
Sbjct: 974 CCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLAN 1033
Query: 277 RAMRVALER---MQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
AL R +E F GA+ L+++L I ++ +D
Sbjct: 1034 ATTYKALIRGLLARETAF-SGADIILKDLLARGFITSMSLSQD 1075
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 100/256 (39%), Gaps = 40/256 (15%)
Query: 85 ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
A+ I EA+ + + + T + L T L K+ + E + + ++S L +V+F L+
Sbjct: 492 AIRIYEAMILEGH-TRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLI 550
Query: 145 QWYSTSGDLELVLSTWNEY-------------------------RQRAKLLS-------- 171
Y SG+ S ++E R+ K L
Sbjct: 551 NGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAA 610
Query: 172 --TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
T YN +++ K+G +AV F +++ +P+S TYT +I L GK A+ +
Sbjct: 611 VDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAI-L 669
Query: 230 FSALPLMR--IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERM 286
F+ R + Y V+G ++ +M + G P A+ +
Sbjct: 670 FAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGY 729
Query: 287 QEMGFIQGANEFLREM 302
MG I+ N+ L EM
Sbjct: 730 SRMGKIEKTNDLLPEM 745
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/138 (20%), Positives = 58/138 (42%)
Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
+ + ++ +G L+ + NE + +Y+ +++ + K G+ A E +
Sbjct: 404 ITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCR 463
Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
+ G PN Y+ +I + +G L A+ ++ A+ L R + +LV +
Sbjct: 464 IYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGK 523
Query: 258 FDEAKSLLNEMRDDGKFP 275
EA+ + M DG P
Sbjct: 524 VAEAEEFMRCMTSDGILP 541
Score = 40.8 bits (94), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 80/390 (20%), Positives = 138/390 (35%), Gaps = 66/390 (16%)
Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
++N++++ K GK EA E R + +G +PN+ ++ +I N G+ A VF +
Sbjct: 510 TFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEM 569
Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFI 292
+ T Y L++G EA+ L + M L M + G +
Sbjct: 570 TKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNL 629
Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
A EM+ + + Y + G+ K K +
Sbjct: 630 AKAVSLFGEMVQRSILPDSYTYTS-----------------LISGLCRKG----KTVIAI 668
Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPE-TAWHFFCWVAYQPGYTHDVYALEK 411
L E + K ++T C V FK+ + A +F G+T D+
Sbjct: 669 LFAKEAEARGNVLPNKVMYT----CFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNA 724
Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
M+ +R G +E + L+ ++ + +T +++ +G SK+ D +
Sbjct: 725 MIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILL--HGYSKRKDVSTS--------- 773
Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
LLY S+ I +GI+PD T L+
Sbjct: 774 --------FLLYRSI--------------------ILNGILPDKLTCHSLVLGICESNML 805
Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
+I K+ GVE D Y F +LI C
Sbjct: 806 EIGLKILKAFICRGVEVDRYTFNMLISKCC 835
Score = 38.5 bits (88), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 477 FKLMLLY---------SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
F+LM LY +++L ++ K D + L+EM+ I PDV TF+ L+
Sbjct: 146 FRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCA 205
Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
+G + L + ++G P + ++ YCK
Sbjct: 206 EGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCK 240
Score = 38.5 bits (88), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 2/139 (1%)
Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
V F L+ + + G+ + L + + S SY +++ K + F+ F
Sbjct: 334 VTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAE-FDLARGFYM 392
Query: 198 VIDEGAIPNSR-TYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
+ + R TYT MI+ L G LD A+ + + + I Y L+ GF V
Sbjct: 393 RMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVG 452
Query: 257 RFDEAKSLLNEMRDDGKFP 275
RF AK ++ + G P
Sbjct: 453 RFKTAKEIVCRIYRVGLSP 471
Score = 37.4 bits (85), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 88/475 (18%), Positives = 178/475 (37%), Gaps = 51/475 (10%)
Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
Y+I++ VY + G +++E FR + G P+ T ++ +V G+ S +
Sbjct: 126 YDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEML 185
Query: 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQ 293
+I + IL+ F+++ L+ +M G P L + G +
Sbjct: 186 KRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFK 245
Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTL 353
A E L M +V Y D N RIA G L + + +
Sbjct: 246 AAIELLDHMKSKGVDADVCTYNMLIHDLCRSN-------RIAKGYLLLRDMRKRMIHPNE 298
Query: 354 DEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSP------------------ETAWHFFCW 395
++ + + K + ++L+ ++L SP + A F +
Sbjct: 299 VTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMF-Y 357
Query: 396 VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455
+ G T + +L L ++ +L +++ +G+ + T +ID G+ K
Sbjct: 358 MMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMID--GLCK 415
Query: 456 KADAALKAFHDDRT-LCGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
F D+ L +SK + ++ YS+L+ K R A ++ + G+
Sbjct: 416 NG------FLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGL 469
Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--------- 562
P+ +S L+Y+ G K +++ + G D + F VL+ + CK
Sbjct: 470 SPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEE 529
Query: 563 ---YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHI 614
+++ ++P+ + + L G +A +V + K+ P+ G +
Sbjct: 530 FMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSL 584
Score = 36.2 bits (82), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%)
Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
S+++R L KC + +A +L M+ +VP + +F+ LM+ G+ +L ++
Sbjct: 933 SAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSN 992
Query: 544 NGVEPDAYMFKVLIQAYC 561
G++ D + VLI C
Sbjct: 993 CGLKLDLVSYNVLITGLC 1010
Score = 33.9 bits (76), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/140 (19%), Positives = 60/140 (42%), Gaps = 1/140 (0%)
Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
+V + L+ SG+L +S + E QR+ L + +Y ++S + GK A+ +
Sbjct: 613 TVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAK 672
Query: 197 QVIDEG-AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
+ G +PN YT ++ + G+ + + + + +++G+ +
Sbjct: 673 EAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRM 732
Query: 256 ERFDEAKSLLNEMRDDGKFP 275
+ ++ LL EM + P
Sbjct: 733 GKIEKTNDLLPEMGNQNGGP 752
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 75.9 bits (185), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 112/514 (21%), Positives = 207/514 (40%), Gaps = 55/514 (10%)
Query: 106 HALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQ 165
++L L+K++R E ++ + ++ + + + + Y + + E R+
Sbjct: 491 NSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE 550
Query: 166 RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225
L + +++ Y K GK EA +R ++D+G + +++TYTV++ L K+D
Sbjct: 551 CGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDD 610
Query: 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER 285
A E+F + I Y +L+ GF + +A S+ +EM ++G P V +
Sbjct: 611 AEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTP----NVIIYN 666
Query: 286 MQEMGFIQ-GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWL 344
M GF + G E +E+L + +K + N+ + Y + +
Sbjct: 667 MLLGGFCRSGEIEKAKELLDEMSVKGLH---------------PNA---VTYCTIIDGYC 708
Query: 345 DPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTH 404
LA + + L FV+TT LV R E A F + G
Sbjct: 709 KSGDLAEAFRLFDEMKLKGLVPDSFVYTT-LVDGCCR-LNDVERAITIF--GTNKKGCAS 764
Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFS-----TIRLIIDFYGISKKADA 459
++ + + G EL ++ +L DG F T ++ID+ +A
Sbjct: 765 STAPFNALINWVFKFGKTELKTEVLNRLM-DGSFDRFGKPNDVTYNIMIDYLCKEGNLEA 823
Query: 460 ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
A + FH + + ++ Y+SLL K R + V +E I +GI PD +S
Sbjct: 824 AKELFHQMQN----ANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYS 879
Query: 520 GLMYHFALQG-DEKIVQKLFSMVRQNGVEPDAYM----FKVLIQAYCKY----------- 563
++ F +G K + + M +N V+ + + L+ + K
Sbjct: 880 VIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVME 939
Query: 564 -LSNSNLMPDAATK-ELLKKSLWKEGRRKEAAAV 595
+ +PD+AT EL+ +S +R EA AV
Sbjct: 940 NMVRLQYIPDSATVIELINESCISSNQRVEADAV 973
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 100/242 (41%), Gaps = 9/242 (3%)
Query: 71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
++ L NAD+A ++ + S+ + V++K + K L + +
Sbjct: 317 LLIDGLLKGRNADAAKGLVHEMVSH-GINIKPYMYDCCICVMSKEGVMEKAKALFDGMIA 375
Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
S + + + +L++ Y ++ E ++R ++S +Y V+ +G
Sbjct: 376 SGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDG 435
Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
A +++I G PN YT +I+ + + A+ V + I Y L+
Sbjct: 436 AYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLII 495
Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKN 310
G +R DEA+S L EM ++G P A G+I+ A+EF DK +K
Sbjct: 496 GLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFIS----GYIE-ASEFAS---ADKYVKE 547
Query: 311 VR 312
+R
Sbjct: 548 MR 549
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 90/452 (19%), Positives = 172/452 (38%), Gaps = 67/452 (14%)
Query: 160 WNEYR---QRAKLLSTESYNIVMSVYAKTGKN-------FEAVETFR------------- 196
W+ Y+ +R + ++Y++++ + + G F+ + FR
Sbjct: 206 WDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLK 265
Query: 197 -QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
+I +G +P TY V+I+ L + +L+ A + + + + + Y +L++G +
Sbjct: 266 ESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKG 325
Query: 256 ERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
D AK L++EM G + M + G ++ A M+ I + Y
Sbjct: 326 RNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAY 385
Query: 315 E---DGSDDDEDENDDNNSGVRI----------AYGVQLKPWL---DPKALANTLDE--- 355
+G +++ V + YG +K D N + E
Sbjct: 386 ASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIA 445
Query: 356 --WSPEVVSLLADAK-FVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
P VV K F+ +R +VL+ K A FC+ + G + E
Sbjct: 446 SGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDE 505
Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470
AR VE+V+ +G++ T I Y + + +A K + R
Sbjct: 506 ------ARSFLVEMVE--------NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE- 550
Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
CG + +L + L+ K + +A + M+ GI+ D +T++ LM
Sbjct: 551 CGVLPN---KVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDK 607
Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
+++F +R G+ PD + + VLI + K
Sbjct: 608 VDDAEEIFREMRGKGIAPDVFSYGVLINGFSK 639
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
+++Y++L++T + R DA+ VL+EM GI PD+ ++ L+ + +
Sbjct: 452 VVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLV 511
Query: 540 MVRQNGVEPDAYMFKVLIQA------------YCKYLSNSNLMPDAATKELLKKSLWKEG 587
+ +NG++P+A+ + I Y K + ++P+ L K+G
Sbjct: 512 EMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKG 571
Query: 588 RRKEAAA 594
+ EA +
Sbjct: 572 KVIEACS 578
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
+ Y+SL+ L+K KR +A + L EM+ +G+ P+ T+ + + + K
Sbjct: 487 IFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVK 546
Query: 540 MVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEG 587
+R+ GV P+ + LI YCK + + ++ DA T +L L+K
Sbjct: 547 EMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKND 606
Query: 588 RRKEAAAV 595
+ +A +
Sbjct: 607 KVDDAEEI 614
>sp|Q9ZU29|PP139_ARATH Pentatricopeptide repeat-containing protein At2g01390
OS=Arabidopsis thaliana GN=At2g01390/At2g01380 PE=2 SV=2
Length = 577
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 106/238 (44%), Gaps = 8/238 (3%)
Query: 68 DPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD 127
D I+ L++ P A F H+ T + + ++ R + ++
Sbjct: 88 DSHIINRVLKAHPPMQKAWLFFNWAAQIKGFKHDHFTYTTMLDIFGEAGRIQSMYSVFHL 147
Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187
+ L +V + +L+ W S+SGD++ + W E R + SY M + G+
Sbjct: 148 MKEKGVLIDTVTYTSLIHWVSSSGDVDGAMRLWEEMRDNGCEPTVVSYTAYMKMLFADGR 207
Query: 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247
EA E +++++ PN TYTV++E+LV GK + AL++F + + ++ I
Sbjct: 208 VEEATEVYKEMLRSRVSPNCHTYTVLMEYLVATGKCEEALDIFFKMQEIGVQPDKAACNI 267
Query: 248 LVEGFVGVERFDEAKSLLNEMRDDG---KFPGRAMRVALERMQEMGFIQGANEFLREM 302
L+ + +L M+++G ++P + +E ++ + +++ LRE+
Sbjct: 268 LIAKALKFGETSFMTRVLVYMKENGVVLRYP-----IFVEALETLKAAGESDDLLREV 320
Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 91/198 (45%), Gaps = 6/198 (3%)
Query: 371 WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIA 430
W + ++ +VL+ + AW FF W A G+ HD + ML I G ++ + +
Sbjct: 87 WDSHIINRVLKAHPPMQKAWLFFNWAAQIKGFKHDHFTYTTMLDIFGEAGRIQSMYSVFH 146
Query: 431 KLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR-TLCGPISKFKLMLLYSSLLRT 489
++ G+ + T +I + S D A++ + + R C P ++ Y++ ++
Sbjct: 147 LMKEKGVLIDTVTYTSLIHWVSSSGDVDGAMRLWEEMRDNGCEPT-----VVSYTAYMKM 201
Query: 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
L R +A V +EM+ S + P+ T++ LM + G + +F +++ GV+PD
Sbjct: 202 LFADGRVEEATEVYKEMLRSRVSPNCHTYTVLMEYLVATGKCEEALDIFFKMQEIGVQPD 261
Query: 550 AYMFKVLIQAYCKYLSNS 567
+LI K+ S
Sbjct: 262 KAACNILIAKALKFGETS 279
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 101/478 (21%), Positives = 188/478 (39%), Gaps = 64/478 (13%)
Query: 146 WYSTSGDLELVLSTWNEYRQRAKLLS-------------TESYNIVMSVYAKTGKNFEAV 192
YSTS +LV+ +++ K LS SYN V+ ++ +N
Sbjct: 130 CYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFA 189
Query: 193 E-TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
E F+++++ PN TY ++I G +D AL +F + Y L++G
Sbjct: 190 ENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDG 249
Query: 252 FVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKN 310
+ + + D+ LL M G P + V + + G ++ + L EM ++R
Sbjct: 250 YCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEM--NRR--- 304
Query: 311 VRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFV 370
G DE + Y +K + L + + L +
Sbjct: 305 ------GYSLDE-----------VTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVIT 347
Query: 371 WTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRL 428
+T+ + +CK + A F + + G + ++ ++ G++ R+
Sbjct: 348 YTSLIHSMCKA----GNMNRAMEFLDQMRVR-GLCPNERTYTTLVDGFSQKGYMNEAYRV 402
Query: 429 IAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD--DRTLCGPISKFKLMLLYSSL 486
+ ++ +G T +I+ + ++ K + A+ D ++ L + YS++
Sbjct: 403 LREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVS------YSTV 456
Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546
L + +A+ V EM+ GI PD T+S L+ F Q K L+ + + G+
Sbjct: 457 LSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGL 516
Query: 547 EPDAYMFKVLIQAYC------KYLSNSN------LMPDAATKELLKKSLWKEGRRKEA 592
PD + + LI AYC K L N ++PD T +L L K+ R +EA
Sbjct: 517 PPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREA 574
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 13/129 (10%)
Query: 480 MLLYSSLLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF 538
+L Y+++L + KR+ A NV +EM+ S + P+V T++ L+ F G+ + LF
Sbjct: 169 VLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLF 228
Query: 539 SMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKE 586
+ G P+ + LI YCK ++ L P+ + ++ L +E
Sbjct: 229 DKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCRE 288
Query: 587 GRRKEAAAV 595
GR KE + V
Sbjct: 289 GRMKEVSFV 297
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 101/502 (20%), Positives = 192/502 (38%), Gaps = 52/502 (10%)
Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
L++ + +G++++ L+ +++ + L + +YN ++ Y K K + + R + +G
Sbjct: 211 LIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKG 270
Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
PN +Y V+I L G++ V + + Y L++G+ F +A
Sbjct: 271 LEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQAL 330
Query: 263 SLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDD 321
+ EM G P +L M + G + A EFL +M N R Y D
Sbjct: 331 VMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGF 390
Query: 322 EDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVS---LLADAKFVWTTRLVCK 378
+ N AY V L+ D + +SP VV+ L+
Sbjct: 391 SQKGYMNE-----AYRV-LREMND--------NGFSPSVVTYNALINGHCVTGKMEDAIA 436
Query: 379 VLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR 438
VL K + G + DV + +L+ R V+ R+ ++ G++
Sbjct: 437 VLEDMK--------------EKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIK 482
Query: 439 LPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFD 498
T +I + ++ A + + + P +F Y++L+
Sbjct: 483 PDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFT----YTALINAYCMEGDLEK 538
Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
A+ + EM+ G++PDV T+S L+ Q + ++L + P + LI+
Sbjct: 539 ALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIE 598
Query: 559 AYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP-----SLALRGH 613
+ SN+ + L K +G EA V E N P ++ + GH
Sbjct: 599 ------NCSNIEFKSVVS--LIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGH 650
Query: 614 IWAVSSADLTRVHSIYRNSITS 635
A D+ + +++Y+ + S
Sbjct: 651 CRA---GDIRKAYTLYKEMVKS 669
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/214 (17%), Positives = 97/214 (45%), Gaps = 6/214 (2%)
Query: 67 LDPFIVT-----HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHEL 121
L P ++T H++ A N + A+ ++ ++ N+ T L ++ +E
Sbjct: 341 LTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVR-GLCPNERTYTTLVDGFSQKGYMNEA 399
Query: 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181
++ +++ + F V + L+ + +G +E ++ + +++ SY+ V+S
Sbjct: 400 YRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSG 459
Query: 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
+ ++ EA+ R+++++G P++ TY+ +I+ + A +++ + + +
Sbjct: 460 FCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPD 519
Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
Y L+ + ++A L NEM + G P
Sbjct: 520 EFTYTALINAYCMEGDLEKALQLHNEMVEKGVLP 553
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 61/148 (41%), Gaps = 15/148 (10%)
Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
+ L+ Y GDLE L NE ++ L +Y+++++ K + EA ++
Sbjct: 523 YTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLF 582
Query: 200 DEGAIPNSRTYTVMIEHLVNL---------------GKLDSALEVFSALPLMRIKRTSKQ 244
E ++P+ TY +IE+ N+ G + A +VF ++ K
Sbjct: 583 YEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTA 642
Query: 245 YLILVEGFVGVERFDEAKSLLNEMRDDG 272
Y I++ G +A +L EM G
Sbjct: 643 YNIMIHGHCRAGDIRKAYTLYKEMVKSG 670
Score = 42.0 bits (97), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 71/176 (40%), Gaps = 1/176 (0%)
Query: 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199
+ L+ +S G + E S +YN +++ + TGK +A+ +
Sbjct: 383 YTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMK 442
Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259
++G P+ +Y+ ++ +D AL V + IK + Y L++GF R
Sbjct: 443 EKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTK 502
Query: 260 EAKSLLNEMRDDGKFPGRAMRVALERMQEM-GFIQGANEFLREMLPDKRIKNVRYY 314
EA L EM G P AL M G ++ A + EM+ + +V Y
Sbjct: 503 EACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTY 558
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 101/470 (21%), Positives = 187/470 (39%), Gaps = 56/470 (11%)
Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
+YN +++ + K + +A ++ + P++ TY +MI L + GKLD AL+V + L
Sbjct: 160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL 219
Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
+ T Y IL+E + DEA L++EM G P + I+
Sbjct: 220 LSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKP--------DMFTYNTIIR 271
Query: 294 GANEFLREMLPDKRIKNVRYYE-DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
G +E + D+ + VR E G + D I+Y + L+ L+
Sbjct: 272 G---MCKEGMVDRAFEMVRNLELKGCEPD-----------VISYNILLRALLNQGKWEEG 317
Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
++ ++ S D V + L+ + R K E A + + + G T D Y+ + +
Sbjct: 318 -EKLMTKMFSEKCDPNVVTYSILITTLCRDGKI-EEAMNLL-KLMKEKGLTPDAYSYDPL 374
Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLC 471
+ R G +++ + + SDG ++ + KAD AL+ F C
Sbjct: 375 IAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGC 434
Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
P S Y+++ L A++++ EM+ +GI PD T++ ++ +G
Sbjct: 435 SPNSSS-----YNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMV 489
Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELL 579
+L +R P + +++ +CK + + P+ T +L
Sbjct: 490 DEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVL 549
Query: 580 KKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAVSSADLTRVHSIY 629
+ + G R EA E ND+ I A+S R+H +
Sbjct: 550 IEGIGFAGYRAEAM------ELANDLV------RIDAISEYSFKRLHRTF 587
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 105/252 (41%), Gaps = 48/252 (19%)
Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
++P+V+ K +T R + K +R + E QP DV+A ++
Sbjct: 120 YNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG--------QP----DVFAYNALING 167
Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH----DDRTLC 471
+ ++ R++ ++RS T ++I K D ALK + D+ C
Sbjct: 168 FCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDN---C 224
Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
P +L+ +++L +A+ +++EM+ G+ PD+ T++ ++ +G
Sbjct: 225 QPTVITYTILIEATMLEGGVD-----EALKLMDEMLSRGLKPDMFTYNTIIRGMCKEG-- 277
Query: 532 KIVQKLFSMVRQ---NGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGR 588
+V + F MVR G EPD + +L++A LL + W+EG
Sbjct: 278 -MVDRAFEMVRNLELKGCEPDVISYNILLRA------------------LLNQGKWEEGE 318
Query: 589 RKEAAAVEERCE 600
+ E+C+
Sbjct: 319 KLMTKMFSEKCD 330
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 65/154 (42%), Gaps = 2/154 (1%)
Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
VN+ ++ +G + L + + + ++ SYN + S +G A+ +
Sbjct: 404 VNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILE 463
Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
++ G P+ TY MI L G +D A E+ + + Y I++ GF R
Sbjct: 464 MMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHR 523
Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGF 291
++A ++L M +G P L ++ +GF
Sbjct: 524 IEDAINVLESMVGNGCRPNETTYTVL--IEGIGF 555
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/234 (20%), Positives = 100/234 (42%), Gaps = 4/234 (1%)
Query: 83 DSALSIMEALKSNPNFSHNQSTLHAL-ATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
D A +++ ++S +FS + T + + ++ ++ + + LK L + S + +
Sbjct: 175 DDATRVLDRMRSK-DFSPDTVTYNIMIGSLCSRGKLDLALKVL-NQLLSDNCQPTVITYT 232
Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
L++ G ++ L +E R +YN ++ K G A E R + +
Sbjct: 233 ILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELK 292
Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
G P+ +Y +++ L+N GK + ++ + + + Y IL+ + +EA
Sbjct: 293 GCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEA 352
Query: 262 KSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
+LL M++ G P + + G + A EFL M+ D + ++ Y
Sbjct: 353 MNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNY 406
Score = 42.0 bits (97), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 48/108 (44%)
Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
V + L+ G +E ++ +++ SY+ +++ + + G+ A+E
Sbjct: 334 VTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLET 393
Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
+I +G +P+ Y ++ L GK D ALE+F L + S Y
Sbjct: 394 MISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSY 441
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHF-ALQGDEKIVQKLFSMVRQNGVEPDAYMFKV 555
+++++LE M+ G PDV + L+ F L+ K V ++ ++ + G +PD + +
Sbjct: 106 IESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAV-RVMEILEKFG-QPDVFAYNA 163
Query: 556 LIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGR 588
LI +CK + + + PD T ++ SL G+
Sbjct: 164 LINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGK 208
>sp|Q9FNG8|PP366_ARATH Putative pentatricopeptide repeat-containing protein At5g06400,
mitochondrial OS=Arabidopsis thaliana GN=At5g06400 PE=3
SV=1
Length = 1030
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 106/230 (46%), Gaps = 22/230 (9%)
Query: 381 RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP 440
R FK P A FF WV + G++H V ML+I ++++VD L++++ +G
Sbjct: 164 RCFKVPHLAMRFFNWVKQKDGFSHRVGIYNTMLSIAGEARNLDMVDELVSEMEKNGCDKD 223
Query: 441 FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDA 499
T ++I YG +KK L F R S F+L Y+ ++R+L R A
Sbjct: 224 IRTWTILISVYGKAKKIGKGLLVFEKMRK-----SGFELDATAYNIMIRSLCIAGRGDLA 278
Query: 500 INVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF-SMVRQNGV-EPDAYMFKVLI 557
+ +EM+ GI ++T+ L+ A +VQ + MVR + E DA+ + L+
Sbjct: 279 LEFYKEMMEKGITFGLRTYKMLLDCIAKSEKVDVVQSIADDMVRICEISEHDAFGY--LL 336
Query: 558 QAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
+++C + L N + DA E+L K L + R +A +
Sbjct: 337 KSFCVSGKIKEALELIRELKNKEMCLDAKYFEILVKGLCRANRMVDALEI 386
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 117/525 (22%), Positives = 209/525 (39%), Gaps = 56/525 (10%)
Query: 66 LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
LL F V+ ++ A L ++ LK N + L L ++ R + ++
Sbjct: 335 LLKSFCVSGKIKEA------LELIRELK-NKEMCLDAKYFEILVKGLCRANRMVDALEIV 387
Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
DI + L+ S + ++ Y D+ L + ++ + +Y +M K
Sbjct: 388 -DIMKRRKLDDSNVYGIIISGYLRQNDVSKALEQFEVIKKSGRPPRVSTYTEIMQHLFKL 446
Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
+ + F ++I+ G P+S T ++ + ++ A +VFS++ IK T K Y
Sbjct: 447 KQFEKGCNLFNEMIENGIEPDSVAITAVVAGHLGQNRVAEAWKVFSSMEEKGIKPTWKSY 506
Query: 246 LILVEGFVGVERFDEAKSLLNEM-------RDDGKFPGRAMRVALERMQEMGFIQGANEF 298
I V+ R+DE + N+M RDD + M++ G + +
Sbjct: 507 SIFVKELCRSSRYDEIIKIFNQMHASKIVIRDD------IFSWVISSMEKNGEKEKIH-L 559
Query: 299 LREMLPDKRIKNVRYYEDGSD----DDEDENDDNNSGVRIAYGVQLKPWL------DPKA 348
++E+ KR + +GS E+E D+ + ++ L P L D +
Sbjct: 560 IKEI--QKRSNSYCDELNGSGKAEFSQEEELVDDYNCPQLVQQSALPPALSAVDKMDVQE 617
Query: 349 LANTLD---EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETA-WHFFCWVAYQPGYTH 404
+ L +W L + +T LV +VLRH K A FF WV + GY H
Sbjct: 618 ICRVLSSSRDWE-RTQEALEKSTVQFTPELVVEVLRHAKIQGNAVLRFFSWVGKRNGYKH 676
Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
+ A + + + + L ++R G + T ++I YG + + A++ F
Sbjct: 677 NSEAYNMSIKVAGCGKDFKQMRSLFYEMRRQGCLITQDTWAIMIMQYGRTGLTNIAIRTF 736
Query: 465 HD--DRTLCGPISKFKLML--LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD---VQT 517
+ D L S FK ++ L R + + R F EMI SG VPD VQ
Sbjct: 737 KEMKDMGLIPSSSTFKCLITVLCEKKGRNVEEATRTF------REMIRSGFVPDRELVQD 790
Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
+ G + G+ K + + + G P + + I+A C+
Sbjct: 791 YLGCLCEV---GNTKDAKSCLDSLGKIGF-PVTVAYSIYIRALCR 831
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/247 (19%), Positives = 95/247 (38%), Gaps = 41/247 (16%)
Query: 69 PFIVTHALRSAP-NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD 127
P +V LR A ++ L + + HN + V + ++++L +
Sbjct: 644 PELVVEVLRHAKIQGNAVLRFFSWVGKRNGYKHNSEAYNMSIKVAGCGKDFKQMRSLFYE 703
Query: 128 ISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA-KTG 186
+ L + ++ Y +G + + T+ E + + S+ ++ +++V K G
Sbjct: 704 MRRQGCLITQDTWAIMIMQYGRTGLTNIAIRTFKEMKDMGLIPSSSTFKCLITVLCEKKG 763
Query: 187 KNFE-AVETFRQVIDEGAIPNSR----------------------------------TYT 211
+N E A TFR++I G +P+ Y+
Sbjct: 764 RNVEEATRTFREMIRSGFVPDRELVQDYLGCLCEVGNTKDAKSCLDSLGKIGFPVTVAYS 823
Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL--LNEMR 269
+ I L +GKL+ AL ++ R Y +V G ++R D K+L +N M+
Sbjct: 824 IYIRALCRIGKLEEALSELASFEGERSLLDQYTYGSIVHGL--LQRGDLQKALDKVNSMK 881
Query: 270 DDGKFPG 276
+ G PG
Sbjct: 882 EIGTKPG 888
Score = 40.8 bits (94), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 54/125 (43%)
Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
GDL+ L N ++ Y ++ + K + + +ET +++ E P+ TY
Sbjct: 868 GDLQKALDKVNSMKEIGTKPGVHVYTSLIVYFFKEKQLEKVLETCQKMEGESCEPSVVTY 927
Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
T MI ++LGK++ A F + K Y + + ++A LL+EM D
Sbjct: 928 TAMICGYMSLGKVEEAWNAFRNMEERGTSPDFKTYSKFINCLCQACKSEDALKLLSEMLD 987
Query: 271 DGKFP 275
G P
Sbjct: 988 KGIAP 992
Score = 40.0 bits (92), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 1/143 (0%)
Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
++ I++SVY K K + + F ++ G ++ Y +MI L G+ D ALE + +
Sbjct: 226 TWTILISVYGKAKKIGKGLLVFEKMRKSGFELDATAYNIMIRSLCIAGRGDLALEFYKEM 285
Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFI 292
I + Y +L++ E+ D +S+ ++M + A L+ G I
Sbjct: 286 MEKGITFGLRTYKMLLDCIAKSEKVDVVQSIADDMVRICEISEHDAFGYLLKSFCVSGKI 345
Query: 293 QGANEFLREMLPDKRIKNVRYYE 315
+ A E +RE+ + + +Y+E
Sbjct: 346 KEALELIRELKNKEMCLDAKYFE 368
Score = 39.7 bits (91), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 5/149 (3%)
Query: 90 EALKSNPNFSHNQSTL--HALATVLAKSQRNHELKTLIGDISSSKFLNVSVN---FMNLM 144
EAL +F +S L + +++ + +L+ + ++S K + + +L+
Sbjct: 837 EALSELASFEGERSLLDQYTYGSIVHGLLQRGDLQKALDKVNSMKEIGTKPGVHVYTSLI 896
Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204
++ LE VL T + + S +Y ++ Y GK EA FR + + G
Sbjct: 897 VYFFKEKQLEKVLETCQKMEGESCEPSVVTYTAMICGYMSLGKVEEAWNAFRNMEERGTS 956
Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
P+ +TY+ I L K + AL++ S +
Sbjct: 957 PDFKTYSKFINCLCQACKSEDALKLLSEM 985
Score = 38.1 bits (87), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/218 (18%), Positives = 95/218 (43%), Gaps = 11/218 (5%)
Query: 62 LNDRL------LDPFIVTHALRSAPNADS-ALSIMEALKSNPNFSHNQSTLHALATVLAK 114
+ DRL +P IV + L+ A+ +K FSH + + ++ +
Sbjct: 142 MEDRLEKLSFRFEPEIVENVLKRCFKVPHLAMRFFNWVKQKDGFSHRVGIYNTMLSIAGE 201
Query: 115 SQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTES 174
++ + L+ ++ + + L+ Y + + L + + R+ L +
Sbjct: 202 ARNLDMVDELVSEMEKNGCDKDIRTWTILISVYGKAKKIGKGLLVFEKMRKSGFELDATA 261
Query: 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234
YNI++ G+ A+E +++++++G RTY ++++ + K+D + A
Sbjct: 262 YNIMIRSLCIAGRGDLALEFYKEMMEKGITFGLRTYKMLLDCIAKSEKVDVVQSI--ADD 319
Query: 235 LMRIKRTSKQ--YLILVEGFVGVERFDEAKSLLNEMRD 270
++RI S+ + L++ F + EA L+ E+++
Sbjct: 320 MVRICEISEHDAFGYLLKSFCVSGKIKEALELIRELKN 357
Score = 34.3 bits (77), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 79/394 (20%), Positives = 147/394 (37%), Gaps = 59/394 (14%)
Query: 171 STESYNIVMSVYAKTGKNFEAVET-FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
++E+YN+ + V A GK+F+ + + F ++ +G + T+ +MI G + A+
Sbjct: 677 NSEAYNMSIKV-AGCGKDFKQMRSLFYEMRRQGCLITQDTWAIMIMQYGRTGLTNIAIRT 735
Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEM 289
F + M + +S + L+ ++L E + GR + A +EM
Sbjct: 736 FKEMKDMGLIPSSSTFKCLI-------------TVLCEKK------GRNVEEATRTFREM 776
Query: 290 ---GFIQGANEFLREMLPDKRIKNVRYY-----EDGSDDDEDENDDNNSGVRIAYGVQLK 341
GF+ PD+ + V+ Y E G+ D D+ + V
Sbjct: 777 IRSGFV-----------PDREL--VQDYLGCLCEVGNTKDAKSCLDSLGKIGFPVTVAYS 823
Query: 342 PWLDPKALANTLDEWSPEVVSLLADAKFV--WTTRLVCKVLRHFKSPETAW---HFFCWV 396
++ L+E E+ S + + +T + L + A + +
Sbjct: 824 IYIRALCRIGKLEEALSELASFEGERSLLDQYTYGSIVHGLLQRGDLQKALDKVNSMKEI 883
Query: 397 AYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK 456
+PG V+ ++ + +E V K+ + T +I Y K
Sbjct: 884 GTKPG----VHVYTSLIVYFFKEKQLEKVLETCQKMEGESCEPSVVTYTAMICGYMSLGK 939
Query: 457 ADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
+ A AF + G FK YS + L + + DA+ +L EM+ GI P
Sbjct: 940 VEEAWNAFRNMEER-GTSPDFKT---YSKFINCLCQACKSEDALKLLSEMLDKGIAPSTI 995
Query: 517 TFSGLMYHFALQGDEKI----VQKLFSMVRQNGV 546
F + Y +G + +QK ++V Q V
Sbjct: 996 NFRTVFYGLNREGKHDLARIALQKKSALVAQRTV 1029
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 72.8 bits (177), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 95/442 (21%), Positives = 175/442 (39%), Gaps = 56/442 (12%)
Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
SY V++ + K G + +A T+ +++D G +P+ TY +I L +D A+EV + +
Sbjct: 198 SYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTM 257
Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293
+ Y ++ G+ + EA L +MR DG P
Sbjct: 258 VKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEP------------------ 299
Query: 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVR---IAYGVQLKPWLDPKALA 350
+ +L D KN R E D G++ YG L+ + AL
Sbjct: 300 --DVVTYSLLMDYLCKNGRCMEARKIFDS----MTKRGLKPEITTYGTLLQGYATKGALV 353
Query: 351 NTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410
V + + +V++ L+C + K + F Q G +
Sbjct: 354 EMHGLLDLMVRNGIHPDHYVFSI-LICAYAKQGKVDQAMLVF--SKMRQQGLNPNAVTYG 410
Query: 411 KMLTILARHGHVE----LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD 466
++ IL + G VE +++I + S G + S I + + + L+
Sbjct: 411 AVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML-- 468
Query: 467 DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
DR +C + ++S++ + K R ++ + E M+ G+ P+V T++ L+ +
Sbjct: 469 DRGICLNT------IFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYC 522
Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAA 574
L G KL S + G++P+ + LI YCK + +S + PD
Sbjct: 523 LAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDII 582
Query: 575 TKELLKKSLWKEGRRKEAAAVE 596
T ++ + L++ R+ AAA E
Sbjct: 583 TYNIILQGLFQT--RRTAAAKE 602
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 1/205 (0%)
Query: 71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
I+ A D A+ + ++ + N T A+ +L KS R + +
Sbjct: 376 ILICAYAKQGKVDQAMLVFSKMRQQ-GLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID 434
Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
++ + +L+ T E E R L+T +N ++ + K G+ E
Sbjct: 435 EGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIE 494
Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
+ + F ++ G PN TY +I GK+D A+++ S + + +K + Y L+
Sbjct: 495 SEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLIN 554
Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP 275
G+ + R ++A L EM G P
Sbjct: 555 GYCKISRMEDALVLFKEMESSGVSP 579
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 105/520 (20%), Positives = 201/520 (38%), Gaps = 39/520 (7%)
Query: 64 DRLLDPFIVTH-----ALRSAPNADSALSIMEALKSN---PNFSHNQSTLHALATVLAKS 115
DR + P +VT+ AL A D A+ ++ + N P+ S LH +
Sbjct: 224 DRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPK 283
Query: 116 QRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESY 175
+ LK + D + S+ LM + +G ++ +R +Y
Sbjct: 284 EAIGFLKKMRSDGVEPDVVTYSL----LMDYLCKNGRCMEARKIFDSMTKRGLKPEITTY 339
Query: 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235
++ YA G E ++ G P+ ++++I GK+D A+ VFS +
Sbjct: 340 GTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQ 399
Query: 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQG 294
+ + Y ++ R ++A +M D+G PG + +L + +
Sbjct: 400 QGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWER 459
Query: 295 ANEFLREMLPDKRIKNVRYYEDGSDDDEDEND--DNNSGVRIAYGVQLKP-------WLD 345
A E + EML N ++ D E ++ + + +KP ++
Sbjct: 460 AEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLIN 519
Query: 346 PKALANTLDEWS---PEVVSLLADAKFVWTTRLV---CKVLRHFKSPETAWHFFCWVAYQ 399
LA +DE +VS+ V + L+ CK+ R E A F +
Sbjct: 520 GYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRM----EDALVLFKEME-S 574
Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
G + D+ +L L + L ++ G ++ ST +I+ +K D
Sbjct: 575 SGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDD 634
Query: 460 ALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
AL+ F + LC + KL ++ ++ L K R+ +A ++ +G+VP+ T+
Sbjct: 635 ALQMFQN---LC--LMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTY 689
Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
+ + QG + + +LF + NG D+ M +++
Sbjct: 690 RLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVR 729
Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 111/559 (19%), Positives = 215/559 (38%), Gaps = 68/559 (12%)
Query: 77 RSAPNADSALSIMEALKSNPN-FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLN 135
R++ D L M L PN FS+N L L +SQ EL ++ D
Sbjct: 137 RTSDAMDIVLRRMTELGCIPNVFSYN-ILLKGLCDE-NRSQEALELLHMMADDRGGGSPP 194
Query: 136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF 195
V++ ++ + GD + ST++E R L +YN +++ K +A+E
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVL 254
Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
++ G +P+ TY ++ + G+ A+ + ++ Y +L++
Sbjct: 255 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKN 314
Query: 256 ERFDEAKSLLNEMRDDGKFP----------GRAMRVALERMQEMGFIQGANEFLREMLPD 305
R EA+ + + M G P G A + AL M + + N + PD
Sbjct: 315 GRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG----IHPD 370
Query: 306 KRIKNV---RYYEDGSDDD--------EDENDDNNSGVRIAYGVQLKPWLDPKALANTLD 354
+ ++ Y + G D + + N+ + YG + + + +
Sbjct: 371 HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNA---VTYGAVIGILCKSGRVEDAML 427
Query: 355 EWSPEVVSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
+ + L+ V+ + + +C + ++ E G + +
Sbjct: 428 YFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML-----DRGICLNTIFFNSI 482
Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
+ + G V ++L + G++ T +I+ Y ++ K D A+K L G
Sbjct: 483 IDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMK------LLSG 536
Query: 473 PIS-KFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG- 529
+S K + YS+L+ K R DA+ + +EM SG+ PD+ T Y+ LQG
Sbjct: 537 MVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIIT-----YNIILQGL 591
Query: 530 ----DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK---------YLSNSNLMP---DA 573
++L+ + ++G + + + +++ CK N LM +A
Sbjct: 592 FQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEA 651
Query: 574 ATKELLKKSLWKEGRRKEA 592
T ++ +L K GR EA
Sbjct: 652 RTFNIMIDALLKVGRNDEA 670
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 8/137 (5%)
Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
Y+S++ L K + A+ VL M+ +G++PD T++ +++ + G K +R
Sbjct: 234 YNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMR 293
Query: 543 QNGVEPDAYMFKVLIQAYCKYLSNSNLMP-----DAATKELLKKSLWKEGRRKEAAAVEE 597
+GVEPD + +L+ CK N M D+ TK LK + G + A +
Sbjct: 294 SDGVEPDVVTYSLLMDYLCK---NGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKG 350
Query: 598 RCEKINDVPSLALRGHI 614
+++ + L +R I
Sbjct: 351 ALVEMHGLLDLMVRNGI 367
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 98/493 (19%), Positives = 185/493 (37%), Gaps = 62/493 (12%)
Query: 125 IGDISSSKFLNVSVNFMNLMQWYS----TSGDLELVLSTWNEYRQRAKLLSTESYNIVMS 180
+G++ F ++ F L++ TS +++VL E + + SYNI++
Sbjct: 110 LGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTEL---GCIPNVFSYNILLK 166
Query: 181 VYAKTGKNFEAVETFRQVIDE---GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
++ EA+E + D+ G+ P+ +YT +I G D A + +
Sbjct: 167 GLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRG 226
Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-GRAMRVALERMQEMGFIQGAN 296
I Y ++ + D+A +LN M +G P L G + A
Sbjct: 227 ILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAI 286
Query: 297 EFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDE- 355
FL++M D +V Y + + Y + ++ + + +++ +
Sbjct: 287 GFLKKMRSDGVEPDVVTYS----------------LLMDYLCKNGRCMEARKIFDSMTKR 330
Query: 356 -WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT 414
PE+ + + T K H + + G D Y ++
Sbjct: 331 GLKPEITTYGTLLQGYAT-----------KGALVEMHGLLDLMVRNGIHPDHYVFSILIC 379
Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH---DDRTLC 471
A+ G V+ + +K+R G+ T +I S + + A+ F D+
Sbjct: 380 AYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP 439
Query: 472 GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE 531
G I +Y+SL+ L C + A ++ EM+ GI + F+ ++ +G
Sbjct: 440 GNI-------VYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 492
Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYC---------KYLS---NSNLMPDAATKELL 579
+KLF ++ + GV+P+ + LI YC K LS + L P+ T L
Sbjct: 493 IESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTL 552
Query: 580 KKSLWKEGRRKEA 592
K R ++A
Sbjct: 553 INGYCKISRMEDA 565
>sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420,
mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2
SV=1
Length = 535
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 110/482 (22%), Positives = 188/482 (39%), Gaps = 59/482 (12%)
Query: 81 NADSALSI-MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS-KFLNVSV 138
N D AL I + A KS+P F+HN T H++ L++++ +++L+ D+ +S +
Sbjct: 61 NIDLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGE 120
Query: 139 N-FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
N F++L++ Y +G E + + S S N +++V + + F+ V +
Sbjct: 121 NLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQN-QRFDLVHAMFK 179
Query: 198 VIDE--GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255
E G PN T ++++ L ++SA +V +P M + Y ++ G+V
Sbjct: 180 NSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVAR 239
Query: 256 ERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
+ AK +L EM D G +P L D K R+ E
Sbjct: 240 GDMESAKRVLEEMLDRGWYPDATTYTVLM--------------------DGYCKLGRFSE 279
Query: 316 DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALA---NTLDEWSPEVVSLLADAKFVWT 372
+ D+ E ++ + YGV ++ K N DE + + F+
Sbjct: 280 AATVMDDMEKNEIEPN-EVTYGVMIRALCKEKKSGEARNMFDE--------MLERSFMPD 330
Query: 373 TRLVCKVL----RHFKSPETA--WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVD 426
+ L CKV+ K E W P D L ++ L + G V
Sbjct: 331 SSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMP----DNALLSTLIHWLCKEGRVTEAR 386
Query: 427 RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKA-FHDD--RTLCGPISKFKLMLLY 483
+L + + + LI G+ +K + DD C P + Y
Sbjct: 387 KLFDEFEKGSIPSLLTYNTLIA---GMCEKGELTEAGRLWDDMYERKCKPNA-----FTY 438
Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
+ L+ L+K + + VLEEM+ G P+ TF L G E+ K+ SM
Sbjct: 439 NVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMKIVSMAVM 498
Query: 544 NG 545
NG
Sbjct: 499 NG 500
Score = 52.8 bits (125), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 79/183 (43%), Gaps = 3/183 (1%)
Query: 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
V AL D A + + N N + + L L L K R E + L +
Sbjct: 337 VIDALCEDHKVDEACGLWRKMLKN-NCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEKG 395
Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
++ + + L+ G+L W++ +R + +YN+++ +K G E
Sbjct: 396 SIPSL-LTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEG 454
Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
V ++++ G PN T+ ++ E L LGK + A+++ S + +M K + + + ++
Sbjct: 455 VRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMKIVS-MAVMNGKVDKESWELFLKK 513
Query: 252 FVG 254
F G
Sbjct: 514 FAG 516
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 106/242 (43%), Gaps = 50/242 (20%)
Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF---YGISK 455
PG+TH+ +L L+R + V+ L+A LR+ + L ID YG++
Sbjct: 76 HPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGE-NLFIDLLRNYGLAG 134
Query: 456 KADAALKAF---------HDDRTLCGPIS------KFKL-----------------MLLY 483
+ +++++ F R+L ++ +F L +
Sbjct: 135 RYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTC 194
Query: 484 SSLLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
+ L++ L K K D + A VL+E+ G+VP++ T++ ++ + +GD + +++ +
Sbjct: 195 NLLVKALCK-KNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEML 253
Query: 543 QNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRK 590
G PDA + VL+ YCK + + + P+ T ++ ++L KE +
Sbjct: 254 DRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSG 313
Query: 591 EA 592
EA
Sbjct: 314 EA 315
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 83/227 (36%), Gaps = 13/227 (5%)
Query: 54 SSNSLSSLLNDRLLDP-FIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVL 112
S SL++LLN + + F + HA+ N+ + I + N T + L L
Sbjct: 154 SVRSLNTLLNVLIQNQRFDLVHAMFK--NSKESFGI----------TPNIFTCNLLVKAL 201
Query: 113 AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172
K ++ +I S + V + ++ Y GD+E E R
Sbjct: 202 CKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDA 261
Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232
+Y ++M Y K G+ EA + PN TY VMI L K A +F
Sbjct: 262 TTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDE 321
Query: 233 LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM 279
+ S +++ + DEA L +M + P A+
Sbjct: 322 MLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNAL 368
Score = 41.2 bits (95), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 73/166 (43%), Gaps = 9/166 (5%)
Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
L+ W G + ++E+ ++ + S +YN +++ + G+ EA + + +
Sbjct: 372 LIHWLCKEGRVTEARKLFDEF-EKGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMYERK 430
Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
PN+ TY V+IE L G + + V + + +LIL EG + + ++A
Sbjct: 431 CKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAM 490
Query: 263 SLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRI 308
+++ +GK + + L++ A E + +LP K +
Sbjct: 491 KIVSMAVMNGKVDKESWELFLKKF--------AGELDKGVLPLKEL 528
Score = 40.0 bits (92), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 90/223 (40%), Gaps = 23/223 (10%)
Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
G T +++ ++ L + +E +++ ++ S G+ T I+ Y ++A
Sbjct: 186 GITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESA 245
Query: 461 LKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
+ + DR + Y+ L+ K R +A V+++M + I P+ T+
Sbjct: 246 KRVLEEMLDRGW------YPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTY 299
Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC-------------KYLS 565
++ + + +F + + PD+ + +I A C K L
Sbjct: 300 GVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLK 359
Query: 566 NSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
N N MPD A L L KEGR EA + + EK +PSL
Sbjct: 360 N-NCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEK-GSIPSL 400
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 82/198 (41%), Gaps = 15/198 (7%)
Query: 370 VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
++T L+ K L E+A+ + G ++ +L G +E R++
Sbjct: 191 IFTCNLLVKALCKKNDIESAYKVLDEIPSM-GLVPNLVTYTTILGGYVARGDMESAKRVL 249
Query: 430 AKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM---LLYSSL 486
++ G +T +++D Y L F + T+ + K ++ + Y +
Sbjct: 250 EEMLDRGWYPDATTYTVLMDGY-------CKLGRFSEAATVMDDMEKNEIEPNEVTYGVM 302
Query: 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK--LFSMVRQN 544
+R L K K+ +A N+ +EM+ +PD ++ AL D K+ + L+ + +N
Sbjct: 303 IRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVID--ALCEDHKVDEACGLWRKMLKN 360
Query: 545 GVEPDAYMFKVLIQAYCK 562
PD + LI CK
Sbjct: 361 NCMPDNALLSTLIHWLCK 378
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 103/472 (21%), Positives = 189/472 (40%), Gaps = 59/472 (12%)
Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
SY+I++ + G+ EA Q+ ++G P++RTYTV+I+ L + G +D A +F +
Sbjct: 268 SYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEM 327
Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFI 292
K Y +L++G + +EA + +M D FP AL + G +
Sbjct: 328 IPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRV 387
Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
A E L M NVR + N+ R+ KP+ L
Sbjct: 388 VPAFELLTVMEKRACKPNVRTF----------NELMEGLCRVG-----KPYKAVHLLKRM 432
Query: 353 LDE-WSPEVVS--LLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYAL 409
LD SP++VS +L D +C+ H + +P D
Sbjct: 433 LDNGLSPDIVSYNVLIDG--------LCRE-GHMNTAYKLLSSMNCFDIEP----DCLTF 479
Query: 410 EKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID-FYGISKKADA--ALKAFHD 466
++ + G ++ + + G+ L T +ID + K DA L+
Sbjct: 480 TAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVK 539
Query: 467 DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
R L P S + +L L+K + + + +L ++ G+VP V T++ L+
Sbjct: 540 MRILTTPHS-------LNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLI 592
Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAA 574
GD ++ +++ +G P+ Y + ++I C++ + +S + P+
Sbjct: 593 RSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHV 652
Query: 575 TKELLKKSLWKEGRRKEAA----AVEERCEKIND-VPSLALRGHIWAVSSAD 621
T ++ K G+ A A+ ER ++ND + S L+G + + D
Sbjct: 653 TYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGFVLSQKGID 704
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 5/181 (2%)
Query: 85 ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
AL I+E L + S L+ + +L+K + E ++G I+ + V + L+
Sbjct: 530 ALFILETLVKMRILTTPHS-LNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLV 588
Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204
SGD+ + L + Y I+++ + G+ EA + + D G
Sbjct: 589 DGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVS 648
Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV----GVERFDE 260
PN TYTVM++ VN GKLD ALE A+ + + Y L++GFV G++ +E
Sbjct: 649 PNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGFVLSQKGIDNSEE 708
Query: 261 A 261
+
Sbjct: 709 S 709
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 70/168 (41%), Gaps = 1/168 (0%)
Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
SV++ L+ G LE ++ ++ ST +Y +++ G +A F
Sbjct: 266 SVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFD 325
Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
++I G PN TYTV+I+ L GK++ A V + RI + Y L+ G+
Sbjct: 326 EMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDG 385
Query: 257 RFDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREML 303
R A LL M P R +E + +G A L+ ML
Sbjct: 386 RVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRML 433
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 166 RAKLLST-ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
+ ++L+T S N+++ + +K K E + ++ G +P+ TYT +++ L+ G +
Sbjct: 539 KMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDIT 598
Query: 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
+ + + L Y I++ G R +EA+ LL+ M+D G P
Sbjct: 599 GSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSP 649
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/172 (19%), Positives = 71/172 (41%)
Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
N T L L + + E + + + + + L+ Y G +
Sbjct: 335 NVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELL 394
Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
+RA + ++N +M + GK ++AV ++++D G P+ +Y V+I+ L
Sbjct: 395 TVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCRE 454
Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
G +++A ++ S++ I+ + ++ F + D A + L M G
Sbjct: 455 GHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKG 506
Score = 37.0 bits (84), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 110/282 (39%), Gaps = 13/282 (4%)
Query: 42 LIDSIRLAVRSNSSNSLS-SLLNDRLLDPFIVTHALRSAPNADS-------ALSIMEALK 93
LID + + +N + ++ DR+ I +AL + D L++ME
Sbjct: 342 LIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRA 401
Query: 94 SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153
PN + L V + H LK ++ + S ++ +V L + +
Sbjct: 402 CKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAY 461
Query: 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213
+L LS+ N + L+ + +++ + K GK A ++ +G + T T +
Sbjct: 462 KL-LSSMNCFDIEPDCLT---FTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTL 517
Query: 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
I+ + +GK AL + L MRI T ++++ + E ++L ++ G
Sbjct: 518 IDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGL 577
Query: 274 FPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
P L + + G I G+ L M + NV Y
Sbjct: 578 VPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPY 619
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/270 (21%), Positives = 105/270 (38%), Gaps = 18/270 (6%)
Query: 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415
W P L + +VL+ A FF W+ QPG+ HD + M+
Sbjct: 314 WGPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGN 373
Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPI 474
L R +++L+ ++ DG + T +I YG + + A+ F+ C P
Sbjct: 374 LGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPD 433
Query: 475 SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534
+ Y +L+ K A+++ + M G+ PD T+S ++ G
Sbjct: 434 R-----VTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAA 488
Query: 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKS 582
KLF + G P+ + +++ + K + N+ PD T ++ +
Sbjct: 489 HKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEV 548
Query: 583 LWKEGRRKEAAAVEERCEKINDVPSLALRG 612
L G +EA AV ++ N +P + G
Sbjct: 549 LGHCGYLEEAEAVFTEMQQKNWIPDEPVYG 578
Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/248 (18%), Positives = 108/248 (43%), Gaps = 6/248 (2%)
Query: 67 LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
+D + L+ + +AL LK P F H+ T + L ++++ + L+
Sbjct: 329 IDAYQANQVLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLD 388
Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
++ +V + L+ Y + L ++ +N+ ++ +Y ++ ++AK G
Sbjct: 389 EMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAG 448
Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
A++ ++++ G P++ TY+V+I L G L +A ++F + Y
Sbjct: 449 FLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYN 508
Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM--- 302
I+++ + A L +M++ G P + + +E + G+++ A EM
Sbjct: 509 IMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQK 568
Query: 303 --LPDKRI 308
+PD+ +
Sbjct: 569 NWIPDEPV 576
Score = 36.6 bits (83), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/149 (18%), Positives = 68/149 (45%)
Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
N T + + + AK++ L D+ ++ F V + +M+ G LE + +
Sbjct: 503 NLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVF 562
Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
E +Q+ + Y +++ ++ K G +A + ++ ++ G PN T ++ + +
Sbjct: 563 TEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRV 622
Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILV 249
K+ A E+ + + ++ + + Y +L+
Sbjct: 623 NKIAEAYELLQNMLALGLRPSLQTYTLLL 651
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 76/166 (45%), Gaps = 8/166 (4%)
Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
+ G D ++ I A+ G +++ + ++++ G+ T +II+ G +
Sbjct: 427 EAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLP 486
Query: 459 AALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
AA K F + D+ C P ++ Y+ ++ K + +A+ + +M +G PD
Sbjct: 487 AAHKLFCEMVDQG-CTPN-----LVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKV 540
Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
T+S +M G + + +F+ ++Q PD ++ +L+ + K
Sbjct: 541 TYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGK 586
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 89/417 (21%), Positives = 165/417 (39%), Gaps = 26/417 (6%)
Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
L+L ++E +L+ + + GK +A R++I +G IP++ TY+
Sbjct: 429 LDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSK 488
Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
++ +L N K++ A +F + + Y I+V+ F ++A+ NEMR+ G
Sbjct: 489 VLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVG 548
Query: 273 KFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYE---DGSDDDEDENDDN 328
P AL + + ANE ML + + N+ Y DG
Sbjct: 549 CTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKAC 608
Query: 329 NSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSL--LADAKFVWTTRLVCKVLRHFKSP 386
R+ G + P +D + P VV+ L D CK R
Sbjct: 609 QIFERMC-GSKDVPDVDMYFKQYDDNSERPNVVTYGALLDG--------FCKSHR----V 655
Query: 387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446
E A ++ + G + + ++ L + G ++ + ++ G T
Sbjct: 656 EEARKLLDAMSME-GCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSS 714
Query: 447 IIDFYGISKKADAALKAFHDD-RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEE 505
+ID Y K+ D A K C P +++Y+ ++ L K + +A +++
Sbjct: 715 LIDRYFKVKRQDLASKVLSKMLENSCAPN-----VVIYTEMIDGLCKVGKTDEAYKLMQM 769
Query: 506 MIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
M G P+V T++ ++ F + G + +L + GV P+ ++VLI CK
Sbjct: 770 MEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCK 826
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 86/204 (42%), Gaps = 7/204 (3%)
Query: 66 LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
LLD F +H + A A+S ME + N Q AL L K + E + +
Sbjct: 645 LLDGFCKSHRVEEARKLLDAMS-MEGCEPN------QIVYDALIDGLCKVGKLDEAQEVK 697
Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
++S F + +L+ Y +L ++ + + + Y ++ K
Sbjct: 698 TEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKV 757
Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
GK EA + + + ++G PN TYT MI+ +GK+++ LE+ + + Y
Sbjct: 758 GKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTY 817
Query: 246 LILVEGFVGVERFDEAKSLLNEMR 269
+L++ D A +LL EM+
Sbjct: 818 RVLIDHCCKNGALDVAHNLLEEMK 841
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 80/203 (39%), Gaps = 1/203 (0%)
Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
N T AL KS R E + L+ +S + + L+ G L+
Sbjct: 638 NVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 697
Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
E + + +Y+ ++ Y K + A + ++++ PN YT MI+ L +
Sbjct: 698 TEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKV 757
Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM- 279
GK D A ++ + + Y +++GF + + + LL M G P
Sbjct: 758 GKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTY 817
Query: 280 RVALERMQEMGFIQGANEFLREM 302
RV ++ + G + A+ L EM
Sbjct: 818 RVLIDHCCKNGALDVAHNLLEEM 840
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 12/138 (8%)
Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
YS +L L + A + EEM G+V DV T++ ++ F G + +K F+ +R
Sbjct: 486 YSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMR 545
Query: 543 QNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRK 590
+ G P+ + LI AY K + + +P+ T L K G+ +
Sbjct: 546 EVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVE 605
Query: 591 EAAAVEERCEKINDVPSL 608
+A + ER DVP +
Sbjct: 606 KACQIFERMCGSKDVPDV 623
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 64/128 (50%), Gaps = 11/128 (8%)
Query: 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID----EGAIPNS 207
D+++ +++ +R +++ Y ++ + K+ + VE R+++D EG PN
Sbjct: 622 DVDMYFKQYDDNSERPNVVT---YGALLDGFCKSHR----VEEARKLLDAMSMEGCEPNQ 674
Query: 208 RTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNE 267
Y +I+ L +GKLD A EV + + T Y L++ + V+R D A +L++
Sbjct: 675 IVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSK 734
Query: 268 MRDDGKFP 275
M ++ P
Sbjct: 735 MLENSCAP 742
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 92/517 (17%), Positives = 189/517 (36%), Gaps = 58/517 (11%)
Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
N+ + + L + + + ++I ++ F+ + + ++ + + +EL +
Sbjct: 447 NKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLF 506
Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
E ++ + +Y I++ + K G +A + F ++ + G PN TYT +I +
Sbjct: 507 EEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKA 566
Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR 280
K+ A E+F + Y L++G + ++A + M P M
Sbjct: 567 KKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMY 626
Query: 281 V-ALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED-----GSDDDEDENDDNNSGV-- 332
+ E + L R++ R D G + ++ D G+
Sbjct: 627 FKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCK 686
Query: 333 --RIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW 390
++ ++K + TL +S + + ++++ K+L + +P
Sbjct: 687 VGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVI 746
Query: 391 HF-----FCWV-----AY-------QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433
+ C V AY + G +V M+ G +E L+ ++
Sbjct: 747 YTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMG 806
Query: 434 SDGMRLPFSTIRLIIDFY--------------------------GISKKADAALKAFHDD 467
S G+ + T R++ID G K + K F +
Sbjct: 807 SKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIES 866
Query: 468 RTLCGPISK---FKLMLLYSSLLRTLTKCKRDFDAINVLEEM-IFSGIVPDV-QTFSGLM 522
L I + + +Y L+ L K +R A+ +LEE+ FS + D T++ L+
Sbjct: 867 LGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLI 926
Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
L + +LFS + + GV P+ F LI+
Sbjct: 927 ESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKG 963
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 86/225 (38%), Gaps = 34/225 (15%)
Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
G+ D K+L L +EL L +++ G+ T +++D + + + A
Sbjct: 478 GFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQA 537
Query: 461 LKAFHDDRTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
K F++ R + C P ++ Y++L+ K K+ A + E M+ G +P++ T+S
Sbjct: 538 RKWFNEMREVGCTPN-----VVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYS 592
Query: 520 GLMYHFALQGD-EKIVQKL---------------FSMVRQNGVEPDAYMFKVLIQAYCK- 562
L+ G EK Q F N P+ + L+ +CK
Sbjct: 593 ALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKS 652
Query: 563 -----------YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVE 596
+S P+ + L L K G+ EA V+
Sbjct: 653 HRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 697
Score = 39.7 bits (91), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 17/92 (18%)
Query: 470 LCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
LCG ++K + L +CKR VL M+ G P + F+ L++ + G
Sbjct: 344 LCGCLNK-----------KQLGRCKR------VLNMMMMEGCYPSPKIFNSLVHAYCTSG 386
Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
D KL + + G P ++ +LI + C
Sbjct: 387 DHSYAYKLLKKMVKCGHMPGYVVYNILIGSIC 418
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/244 (18%), Positives = 89/244 (36%), Gaps = 17/244 (6%)
Query: 326 DDNNSGVRIAYGVQLKPWLDPKALANTL----DEWSPEVVSLLADAKFVWTTRLVCKVLR 381
D N V + + +D +A+A+ + D + + L + + LV +VLR
Sbjct: 81 DYGNVNVHQVVPIITQSSIDARAIADAVSGVDDVFGRKSQKFLRQFREKLSESLVIEVLR 140
Query: 382 HFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPF 441
P FF W Q GY H ++ ++ R ++ + + ++R D +
Sbjct: 141 LIARPSAVISFFVWAGRQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKEVFG 200
Query: 442 STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL---MLLYSSLLRTLTKCKRDFD 498
+ +++ + + AL+ G + F+ Y+ L++ K R
Sbjct: 201 EFLNVLVRKHCRNGSFSIALEEL-------GRLKDFRFRPSRSTYNCLIQAFLKADRLDS 253
Query: 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558
A + EM + + D T Y G + + ++V PD + LI
Sbjct: 254 ASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWR---EALTLVETENFVPDTVFYTKLIS 310
Query: 559 AYCK 562
C+
Sbjct: 311 GLCE 314
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 39/81 (48%)
Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
+ Y+ L+ L + +A++ L M + +P+V T+S L+ + +++ +M
Sbjct: 303 VFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNM 362
Query: 541 VRQNGVEPDAYMFKVLIQAYC 561
+ G P +F L+ AYC
Sbjct: 363 MMMEGCYPSPKIFNSLVHAYC 383
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 88/486 (18%), Positives = 199/486 (40%), Gaps = 35/486 (7%)
Query: 97 NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
+HN TL+ + + + +++G + + + F L++ G +
Sbjct: 118 GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEA 177
Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
+ + + +YN +++ ++G A++ R++ + + TY+ +I+
Sbjct: 178 VVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDS 237
Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
L G +D+A+ +F + IK + Y LV G ++++ LL +M P
Sbjct: 238 LCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPN 297
Query: 277 R-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIA 335
V L+ + G +Q ANE +EM+ N+ Y D +N + + +
Sbjct: 298 VITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLD 357
Query: 336 YGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCW 395
V+ ++ SP++V+ + K + V ++ F++
Sbjct: 358 LMVR--------------NKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNIS-------- 395
Query: 396 VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455
+ G + ++ + G ++L + L ++ S G+ T +++D +
Sbjct: 396 ---KRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNG 452
Query: 456 KADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
K + AL+ F D + SK L +++Y++++ + K + DA N+ + G+ P+
Sbjct: 453 KLEKALEIFEDLQK-----SKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPN 507
Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAA 574
V T++ ++ +G L + ++G P+ + LI+A +L + +L A
Sbjct: 508 VMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRA---HLRDGDLTASAK 564
Query: 575 TKELLK 580
E +K
Sbjct: 565 LIEEMK 570
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 98/225 (43%), Gaps = 2/225 (0%)
Query: 83 DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
D+A+S+ + +++ + T ++L L K+ + ++ L+ D+ S + + + F
Sbjct: 245 DAAISLFKEMET-KGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNV 303
Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
L+ + G L+ + E R + +YN +M Y + EA ++
Sbjct: 304 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363
Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
P+ T+T +I+ + ++D ++VF + + + Y ILV+GF + A+
Sbjct: 364 CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAE 423
Query: 263 SLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDK 306
L EM G P + L+ + + G ++ A E ++ K
Sbjct: 424 ELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 468
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 81/197 (41%), Gaps = 9/197 (4%)
Query: 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF 464
+V +L + + G ++ + L ++ + G+ T ++D Y + + A
Sbjct: 297 NVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML 356
Query: 465 H-DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
R C P ++ ++SL++ KR D + V + G+V + T+S L+
Sbjct: 357 DLMVRNKCSPD-----IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQ 411
Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSL 583
F G K+ ++LF + +GV PD + +L+ C N L E L+KS
Sbjct: 412 GFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLC---DNGKLEKALEIFEDLQKSK 468
Query: 584 WKEGRRKEAAAVEERCE 600
G +E C+
Sbjct: 469 MDLGIVMYTTIIEGMCK 485
Score = 41.2 bits (95), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 13/117 (11%)
Query: 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553
K+D DAI + +EMI S +P + FS A +V + NG+ + Y
Sbjct: 68 KKD-DAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTL 126
Query: 554 KVLIQAYCKYLSNS------------NLMPDAATKELLKKSLWKEGRRKEAAAVEER 598
++I +C+ PD T L K L+ EG+ EA + +R
Sbjct: 127 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDR 183
Score = 37.4 bits (85), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 12/114 (10%)
Query: 486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545
++ +C + A +VL +++ G PD TF+ L+ L+G L + +NG
Sbjct: 129 MINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENG 188
Query: 546 VEPDAYMFKVLIQAYCKYLSNS------------NLMPDAATKELLKKSLWKEG 587
+PD + ++ C+ S N+ D T + SL ++G
Sbjct: 189 CQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDG 242
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 70.1 bits (170), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 106/529 (20%), Positives = 206/529 (38%), Gaps = 79/529 (14%)
Query: 173 ESYNIVMSVYAKTGKNFEAVETFRQVI-DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
++YN+++ + K K FE F + EG P+ +Y+ +I L GKLD ALE+F
Sbjct: 150 QTYNVLIKMSCKK-KEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFD 208
Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK-FPG-RAMRVALERMQEM 289
+ + Y IL++GF+ + A L + + +D +P + + + + +
Sbjct: 209 EMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKC 268
Query: 290 GFIQGANEFLREMLPDKRIKNVRYYE-------DGSDDDEDEN-----DDNNSGVR-IAY 336
G + + M ++R K++ Y D + D+ E+ D+ + + + Y
Sbjct: 269 GRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTY 328
Query: 337 GVQLKPWLDPKALANTLDEW-------SPEVVS-------LLADAKFVWTTRLVCKVL-- 380
L + + +L+ W S +VS LL + K T ++ +++
Sbjct: 329 NTMLGGFCRCGKIKESLELWRIMEHKNSVNIVSYNILIKGLLENGKIDEAT-MIWRLMPA 387
Query: 381 RHFKSPETAWHFFCWVAYQPGYTH----------------DVYALEKMLTILARHGHVEL 424
+ + + +T + F GY + DVYA ++ L + +E
Sbjct: 388 KGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEE 447
Query: 425 VDRLIAKLRSDGMRLPFSTIR-LIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLY 483
L+ ++ G+ L LI S+ +A+ + C P ++ Y
Sbjct: 448 ASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPT-----VVSY 502
Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
+ L+ L K + +A ++EM+ +G PD++T+S L+ + +L+ Q
Sbjct: 503 NILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQ 562
Query: 544 NGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKE 591
+G+E D M +LI C + + N + T L + +K G
Sbjct: 563 SGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNR 622
Query: 592 AAAVEERCEKINDVPSL-----------ALRGHIWAVSSADLTRVHSIY 629
A + K+ P + RG +A+ D R H I+
Sbjct: 623 ATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDDARNHGIF 671
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 104/269 (38%), Gaps = 47/269 (17%)
Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
V K+L+ K+P A+ F PGY H +L L+ V V R++ +RS
Sbjct: 13 VLKLLKSEKNPRAAFALFDSATRHPGYAHSAVVYHHILRRLSETRMVNHVSRIVELIRSQ 72
Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL--CGP-ISKFKLML----------- 481
+ +I YG + D AL F R + C P I + +L
Sbjct: 73 ECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVK 132
Query: 482 ------------------LYSSLLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLM 522
Y+ L++ K K++F+ A L+ M G PDV ++S ++
Sbjct: 133 VESLFAYFETAGVAPNLQTYNVLIKMSCK-KKEFEKARGFLDWMWKEGFKPDVFSYSTVI 191
Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK-------------YLSNSNL 569
A G +LF + + GV PD + +LI + K L +S++
Sbjct: 192 NDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSV 251
Query: 570 MPDAATKELLKKSLWKEGRRKEAAAVEER 598
P+ T ++ L K GR + + ER
Sbjct: 252 YPNVKTHNIMISGLSKCGRVDDCLKIWER 280
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 93/204 (45%), Gaps = 13/204 (6%)
Query: 71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATV---LAKSQRNHELKTLIGD 127
I H L + AL +M+ ++S S ++A A++ L K +R E L+ +
Sbjct: 399 IFIHGLCVNGYVNKALGVMQEVES----SGGHLDVYAYASIIDCLCKKKRLEEASNLVKE 454
Query: 128 ISSSKF-LNVSVN--FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK 184
+S LN V + + S G+ L + R ++S YNI++ K
Sbjct: 455 MSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVS---YNILICGLCK 511
Query: 185 TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQ 244
GK EA +++++ G P+ +TY++++ L K+D ALE++ ++
Sbjct: 512 AGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMM 571
Query: 245 YLILVEGFVGVERFDEAKSLLNEM 268
+ IL+ G V + D+A +++ M
Sbjct: 572 HNILIHGLCSVGKLDDAMTVMANM 595
Score = 40.0 bits (92), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 74/408 (18%), Positives = 160/408 (39%), Gaps = 28/408 (6%)
Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
+ +++NI++S +K G+ + ++ + ++ + TY+ +I L + G +D A VF
Sbjct: 254 NVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVF 313
Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMG 290
+ L + Y ++ GF + E+ L M + + ++ + E G
Sbjct: 314 NELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKNSVNIVSYNILIKGLLENG 373
Query: 291 FIQGANEFLREMLPDKRIK-------------NVRYYEDGSDDDEDENDDNNSGVRI-AY 336
I A R ++P K V Y + + E + + + + AY
Sbjct: 374 KIDEATMIWR-LMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAY 432
Query: 337 GVQLKPWLDPKAL---ANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFF 393
+ K L +N + E S V L + L+ ++R + E + FF
Sbjct: 433 ASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHV----CNALIGGLIRDSRLGEAS--FF 486
Query: 394 CWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGI 453
+ G V + ++ L + G + ++ +G + T +++
Sbjct: 487 LREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCR 546
Query: 454 SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP 513
+K D AL+ +H + L + +M ++ L+ L + DA+ V+ M
Sbjct: 547 DRKIDLALELWH--QFLQSGLETDVMM--HNILIHGLCSVGKLDDAMTVMANMEHRNCTA 602
Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
++ T++ LM F GD ++ + + G++PD + +++ C
Sbjct: 603 NLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLC 650
Score = 36.6 bits (83), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/123 (18%), Positives = 49/123 (39%)
Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
++L L W+++ Q +NI++ GK +A+ + N TY
Sbjct: 550 IDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNT 609
Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
++E +G + A ++ + M ++ Y +++G A ++ R+ G
Sbjct: 610 LMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDDARNHG 669
Query: 273 KFP 275
FP
Sbjct: 670 IFP 672
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 101/248 (40%), Gaps = 18/248 (7%)
Query: 378 KVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM 437
+VL+ + A FF W+ QPG+ HD + M+ L R +++L+ ++ DG
Sbjct: 331 QVLKQMDNYANALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGC 390
Query: 438 RLPFSTIRLIIDFYGISKKADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496
+ T +I YG + A+ F+ C P + Y +L+ K
Sbjct: 391 KPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDR-----VTYCTLIDIHAKAGFL 445
Query: 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVL 556
A+++ + M +G+ PD T+S ++ G +LF + G P+ F ++
Sbjct: 446 DIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIM 505
Query: 557 IQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND 604
I + K + N+ PD T ++ + L G +EA V ++ N
Sbjct: 506 IALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNW 565
Query: 605 VPSLALRG 612
VP + G
Sbjct: 566 VPDEPVYG 573
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/248 (19%), Positives = 110/248 (44%), Gaps = 6/248 (2%)
Query: 67 LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIG 126
+D + L+ N +AL LK P F H+ T + L ++++ E+ L+
Sbjct: 324 MDAYQANQVLKQMDNYANALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLD 383
Query: 127 DISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186
++ +V + L+ Y + L+ ++ +N+ ++ +Y ++ ++AK G
Sbjct: 384 EMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAG 443
Query: 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246
A++ ++++ + G P++ TY+V+I L G L +A +F + +
Sbjct: 444 FLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFN 503
Query: 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM--- 302
I++ ++ A L +M++ G P + + +E + GF++ A EM
Sbjct: 504 IMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRK 563
Query: 303 --LPDKRI 308
+PD+ +
Sbjct: 564 NWVPDEPV 571
>sp|Q9FKR3|PP404_ARATH Pentatricopeptide repeat-containing protein At5g38730
OS=Arabidopsis thaliana GN=At5g38730 PE=2 SV=1
Length = 596
Score = 69.7 bits (169), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 98/241 (40%), Gaps = 34/241 (14%)
Query: 383 FKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFS 442
+ P +W FF W P H + + KM+ IL +H H + +L+ KL +
Sbjct: 57 YGGPSLSWSFFIWTDSLPSSKHSLQSSWKMILILTKHKHFKTAHQLLDKLAQRELLSSPL 116
Query: 443 TIRLIID------------------FYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS 484
+R ++ +Y + + ++ F R+ CG + +
Sbjct: 117 VLRSLVGGVSEDPEDVSHVFSWLMIYYAKAGMINDSIVVFEQIRS-CGLKPHLQAC---T 172
Query: 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544
LL +L K + + ++M+ G+V ++ ++ L++ + GD + +KL S + +
Sbjct: 173 VLLNSLVKQRLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEK 232
Query: 545 GVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEA 592
GV PD + + LI YCK + S + P+ T +EGR +EA
Sbjct: 233 GVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSREGRMREA 292
Query: 593 A 593
Sbjct: 293 T 293
Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 112/276 (40%), Gaps = 14/276 (5%)
Query: 41 QLIDSIRLAVRS--NSSNSLSSLLNDRLLDPFIVTHALR-------SAPNADSALSIMEA 91
QL+D +LA R +S L SL+ DP V+H A + ++ + E
Sbjct: 101 QLLD--KLAQRELLSSPLVLRSLVGGVSEDPEDVSHVFSWLMIYYAKAGMINDSIVVFEQ 158
Query: 92 LKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG 151
++S H Q+ L +++ + + K + N+ V + L+ S SG
Sbjct: 159 IRSCGLKPHLQACTVLLNSLVKQRLTDTVWKIFKKMVKLGVVANIHV-YNVLVHACSKSG 217
Query: 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT 211
D E +E ++ +YN ++SVY K +FEA+ ++ G PN TY
Sbjct: 218 DPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYN 277
Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
I G++ A +F + + Y L++G+ + DEA L M
Sbjct: 278 SFIHGFSREGRMREATRLFREIK-DDVTANHVTYTTLIDGYCRMNDIDEALRLREVMESR 336
Query: 272 GKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDK 306
G PG L ++ E G I+ AN L EM K
Sbjct: 337 GFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKK 372
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 60/128 (46%), Gaps = 13/128 (10%)
Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
F + Y++L+ K F+A++V + M SG+ P++ T++ ++ F+ +G + +
Sbjct: 235 FPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSREGRMREATR 294
Query: 537 LFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLW 584
LF ++ + V + + LI YC+ + + P T + + L
Sbjct: 295 LFREIKDD-VTANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLC 353
Query: 585 KEGRRKEA 592
++GR +EA
Sbjct: 354 EDGRIREA 361
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 91/231 (39%), Gaps = 22/231 (9%)
Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
+ G ++ + +R G + RL +++ D + T +ID Y D
Sbjct: 266 RSGVAPNIVTYNSFIHGFSREGRMREATRLFREIKDD-VTANHVTYTTLIDGYCRMNDID 324
Query: 459 AALK--AFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
AL+ + R + + Y+S+LR L + R +A +L EM I PD
Sbjct: 325 EALRLREVMESRGFSPGV------VTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNI 378
Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSN-------- 568
T + L+ + D K+ + ++G++ D Y +K LI +CK L N
Sbjct: 379 TCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELENAKEELFSM 438
Query: 569 ----LMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLAL-RGHI 614
P AT L + + ++ E + E EK +AL RG I
Sbjct: 439 IEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYRGLI 489
Score = 37.7 bits (86), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 75/192 (39%), Gaps = 1/192 (0%)
Query: 81 NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNF 140
+ D AL + E ++S FS T +++ L + R E L+ ++S K ++
Sbjct: 322 DIDEALRLREVMESR-GFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITC 380
Query: 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200
L+ Y D+ + + + L SY ++ + K + A E +I+
Sbjct: 381 NTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELENAKEELFSMIE 440
Query: 201 EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
+G P TY+ +++ N K D ++ + Y L+ +E+ D
Sbjct: 441 KGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYRGLIRRICKLEQVDY 500
Query: 261 AKSLLNEMRDDG 272
AK L M G
Sbjct: 501 AKVLFESMEKKG 512
Score = 36.2 bits (82), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 74/197 (37%), Gaps = 8/197 (4%)
Query: 85 ALSI---MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
ALS+ ME PN S +H + + R E L +I N V +
Sbjct: 257 ALSVQDRMERSGVAPNIVTYNSFIHGFS----REGRMREATRLFREIKDDVTAN-HVTYT 311
Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
L+ Y D++ L R +YN ++ + G+ EA ++ +
Sbjct: 312 TLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGK 371
Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
P++ T +I + + SA++V + +K Y L+ GF V + A
Sbjct: 372 KIEPDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELENA 431
Query: 262 KSLLNEMRDDGKFPGRA 278
K L M + G PG A
Sbjct: 432 KEELFSMIEKGFSPGYA 448
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 69.3 bits (168), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 106/246 (43%), Gaps = 11/246 (4%)
Query: 65 RLLDPFIVTHALRSAPNA-------DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR 117
R +DP I T++ S N D A + E + S F N T + L K++R
Sbjct: 354 RSIDPDIFTYS--SLINGFCMHDRLDEAKHMFELMISKDCFP-NVVTYNTLIKGFCKAKR 410
Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI 177
E L ++S + +V + L+Q +GD ++ + + +Y+I
Sbjct: 411 VEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSI 470
Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
++ K GK +A+ F + P+ TY +MIE + GK++ ++F +L L
Sbjct: 471 LLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 530
Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQ-EMGFIQGAN 296
+K Y ++ GF +EA +L EM++DG P L R + G +
Sbjct: 531 VKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASA 590
Query: 297 EFLREM 302
E ++EM
Sbjct: 591 ELIKEM 596
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 88/484 (18%), Positives = 193/484 (39%), Gaps = 46/484 (9%)
Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
L G++ S+ L V F L+ + +LV+S + SYNI+++ +
Sbjct: 67 LFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFC 126
Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
+ + A+ +++ G P+ T + ++ + ++ A+ + + +M + +
Sbjct: 127 RRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTV 186
Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREM 302
+ L+ G + EA +L++ M G P + + + G I A L++M
Sbjct: 187 TFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM 246
Query: 303 LPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVS 362
K +V Y D + + N++ + L +D K + + ++ +
Sbjct: 247 EKGKIEADVVIYTTIIDALCNYKNVNDA-------LNLFTEMDNKGIRPNVVTYNSLIRC 299
Query: 363 LLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHV 422
L ++ +RL+ ++ +P +V ++ + G +
Sbjct: 300 LCNYGRWSDASRLLSDMIERKINP------------------NVVTFSALIDAFVKEGKL 341
Query: 423 ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK--FKLM 480
++L ++ + T +I+ + + + D A F ISK F +
Sbjct: 342 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE------LMISKDCFPNV 395
Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
+ Y++L++ K KR + + + EM G+V + T++ L+ GD + QK+F
Sbjct: 396 VTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKK 455
Query: 541 VRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGR 588
+ +GV PD + +L+ CK YL S + PD T ++ + + K G+
Sbjct: 456 MVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGK 515
Query: 589 RKEA 592
++
Sbjct: 516 VEDG 519
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 83/204 (40%), Gaps = 1/204 (0%)
Query: 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
+ AL + N + AL++ + N N T ++L L R + L+ D+
Sbjct: 261 IIDALCNYKNVNDALNLFTEM-DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIER 319
Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
K V F L+ + G L ++E +R+ +Y+ +++ + + EA
Sbjct: 320 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 379
Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
F +I + PN TY +I+ +++ +E+F + + + Y L++G
Sbjct: 380 KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQG 439
Query: 252 FVGVERFDEAKSLLNEMRDDGKFP 275
D A+ + +M DG P
Sbjct: 440 LFQAGDCDMAQKIFKKMVSDGVPP 463
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 88/469 (18%), Positives = 173/469 (36%), Gaps = 71/469 (15%)
Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
+T ++N ++ K EAV +++ G P+ TY ++ L G +D AL +
Sbjct: 184 NTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLL 243
Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER-MQEM 289
+ +I+ Y +++ + ++A +L EM + G P +L R +
Sbjct: 244 KKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNY 303
Query: 290 GFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPK-- 347
G A+ L +M+ K NV + D E + Y +K +DP
Sbjct: 304 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEA--EKLYDEMIKRSIDPDIF 361
Query: 348 ---------ALANTLDEWSPEVVSLLADAKF--VWTTRLVCKVLRHFKSPETAWHFFCWV 396
+ + LDE +++ F V T + K K E F +
Sbjct: 362 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM 421
Query: 397 AYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK 456
+ Q G + ++ L + G ++ ++ K+ SDG +P I
Sbjct: 422 S-QRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG--VPPDIIT----------- 467
Query: 457 ADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
YS LL L K + A+ V E + S + PD+
Sbjct: 468 --------------------------YSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIY 501
Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------L 564
T++ ++ G + LF + GV+P+ ++ +I +C+ +
Sbjct: 502 TYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREM 561
Query: 565 SNSNLMPDAATKELLKKSLWKEGRRKEAAAV--EER-CEKINDVPSLAL 610
+P++ T L ++ ++G + +A + E R C + D ++++
Sbjct: 562 KEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISM 610
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/203 (18%), Positives = 85/203 (41%), Gaps = 16/203 (7%)
Query: 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALK 462
++D+Y+ ++ R + L ++ K+ G T+ +++ Y K+ A+
Sbjct: 112 SYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAV- 170
Query: 463 AFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
A D + + + +++L+ L + +A+ +++ M+ G PD+ T+ ++
Sbjct: 171 ALVDQMFV---MEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVV 227
Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLM 570
+GD + L + + +E D ++ +I A C Y + N +
Sbjct: 228 NGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIR 287
Query: 571 PDAATKELLKKSLWKEGRRKEAA 593
P+ T L + L GR +A+
Sbjct: 288 PNVVTYNSLIRCLCNYGRWSDAS 310
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 104/246 (42%), Gaps = 11/246 (4%)
Query: 65 RLLDPFIVTHALRSAPNA-------DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR 117
R +DP I T++ S N D A + E + S F N T L K++R
Sbjct: 357 RSIDPDIFTYS--SLINGFCMHDRLDEAKHMFELMISKDCFP-NVVTYSTLIKGFCKAKR 413
Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI 177
E L ++S + +V + L+ + + D + + + + +YNI
Sbjct: 414 VEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNI 473
Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
++ K GK +A+ F + P+ TY +MIE + GK++ E+F L L
Sbjct: 474 LLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKG 533
Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQ-EMGFIQGAN 296
+ Y ++ GF +EA SLL +M++DG P L R + G + +
Sbjct: 534 VSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASA 593
Query: 297 EFLREM 302
E ++EM
Sbjct: 594 ELIKEM 599
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 89/487 (18%), Positives = 189/487 (38%), Gaps = 52/487 (10%)
Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
L GD+ S+ V F L+ + ELV+S + + +Y+I ++ +
Sbjct: 70 LFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFC 129
Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
+ + A+ +++ G P+ T + ++ + ++ A+ + + M K +
Sbjct: 130 RRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTF 189
Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
+ L+ G + EA +L+++M G P + + + G I A L++M
Sbjct: 190 TFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKM 249
Query: 303 LPDKRIKNVRYYE---DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPE 359
K +V Y DG + +D + L +D K + + +S
Sbjct: 250 EKGKIEADVVIYNTIIDGLCKYKHMDD----------ALNLFTEMDNKGIRPDVFTYSSL 299
Query: 360 VVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH 419
+ L ++ +RL+ ++ +P +V ++ +
Sbjct: 300 ISCLCNYGRWSDASRLLSDMIERKINP------------------NVVTFSALIDAFVKE 341
Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK--F 477
G + ++L ++ + T +I+ + + + D A F ISK F
Sbjct: 342 GKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL------MISKDCF 395
Query: 478 KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL 537
++ YS+L++ K KR + + + EM G+V + T++ L++ F D Q +
Sbjct: 396 PNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMV 455
Query: 538 FSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWK 585
F + GV P+ + +L+ CK YL S + PD T ++ + + K
Sbjct: 456 FKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCK 515
Query: 586 EGRRKEA 592
G+ ++
Sbjct: 516 AGKVEDG 522
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 86/207 (41%), Gaps = 20/207 (9%)
Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
G +HD+Y + R + L ++AK+ G T+ +++ Y SK+ A
Sbjct: 113 GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDA 172
Query: 461 LKAFHDDRTLCG--PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
+ A D G P + +++L+ L + +A+ ++++M+ G PD+ T+
Sbjct: 173 V-ALVDQMVEMGYKPDT-----FTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTY 226
Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSN 566
++ +GD + L + + +E D ++ +I CKY + N
Sbjct: 227 GTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDN 286
Query: 567 SNLMPDAATKELLKKSLWKEGRRKEAA 593
+ PD T L L GR +A+
Sbjct: 287 KGIRPDVFTYSSLISCLCNYGRWSDAS 313
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/204 (19%), Positives = 81/204 (39%), Gaps = 1/204 (0%)
Query: 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
+ L + D AL++ + N + T +L + L R + L+ D+
Sbjct: 264 IIDGLCKYKHMDDALNLFTEM-DNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIER 322
Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
K V F L+ + G L ++E +R+ +Y+ +++ + + EA
Sbjct: 323 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 382
Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
F +I + PN TY+ +I+ +++ +E+F + + + Y L+ G
Sbjct: 383 KHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHG 442
Query: 252 FVGVERFDEAKSLLNEMRDDGKFP 275
F D A+ + +M G P
Sbjct: 443 FFQARDCDNAQMVFKQMVSVGVHP 466
Score = 36.2 bits (82), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 83/211 (39%), Gaps = 20/211 (9%)
Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
G DV+ +++ L +G RL++ + + T +ID + K A
Sbjct: 288 GIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEA 347
Query: 461 LKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
K + + R++ I YSSL+ R +A ++ E MI P+V T+
Sbjct: 348 EKLYDEMIKRSIDPDI------FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 401
Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY-----C-------KYLSN 566
S L+ F + +LF + Q G+ + + LI + C K + +
Sbjct: 402 STLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVS 461
Query: 567 SNLMPDAATKELLKKSLWKEGRRKEAAAVEE 597
+ P+ T +L L K G+ +A V E
Sbjct: 462 VGVHPNILTYNILLDGLCKNGKLAKAMVVFE 492
Score = 33.1 bits (74), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 12/150 (8%)
Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536
F ++ ++ LL + K + I++ E+M GI D+ T+S + F + +
Sbjct: 80 FPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALA 139
Query: 537 LFSMVRQNGVEPDAYMFKVLIQAYC--KYLSNS----------NLMPDAATKELLKKSLW 584
+ + + + G EPD L+ YC K +S++ PD T L L+
Sbjct: 140 VLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLF 199
Query: 585 KEGRRKEAAAVEERCEKINDVPSLALRGHI 614
+ EA A+ ++ + P L G +
Sbjct: 200 LHNKASEAVALVDQMVQRGCQPDLVTYGTV 229
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 67.0 bits (162), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 79/174 (45%)
Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
T L + L + R E K L ++ V + +L+ S +++ + E
Sbjct: 194 TYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEM 253
Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
+ + + +Y+ +M K G++ +A+E F ++ G PN TYT +I L K+
Sbjct: 254 KSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKI 313
Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR 277
A+E+ + L +K + Y ++ GF + +F EA + L+EM G P R
Sbjct: 314 QEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNR 367
Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 1/124 (0%)
Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA-VETFRQVIDEGAIPNSRTYT 211
L L + R+ + S N+++ + +A ++ F ++ G P+S TY
Sbjct: 137 LNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYG 196
Query: 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
+I L G++D A ++F+ + T Y L+ G G + DEA L EM+
Sbjct: 197 TLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSK 256
Query: 272 GKFP 275
G P
Sbjct: 257 GIEP 260
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530
C P ++ Y+SL+ L K +A+ LEEM GI P+V T+S LM G
Sbjct: 223 CAPT-----VVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGR 277
Query: 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
+LF M+ G P+ + LI CK
Sbjct: 278 SLQAMELFEMMMARGCRPNMVTYTTLITGLCK 309
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 8/163 (4%)
Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
G D Y +++ L R G ++ +L ++ T +I+ SK D A
Sbjct: 187 GCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEA 246
Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
++ + ++ + F YSSL+ L K R A+ + E M+ G P++ T++
Sbjct: 247 MRYLEEMKSKGIEPNVFT----YSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTT 302
Query: 521 LMYHFALQGDEKIVQKLFSMVRQN--GVEPDAYMFKVLIQAYC 561
L+ L ++KI + + + R N G++PDA ++ +I +C
Sbjct: 303 LIT--GLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFC 343
Score = 42.0 bits (97), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 85/205 (41%), Gaps = 17/205 (8%)
Query: 369 FVWTTRL----VCKVLRHFKSPETAWHFF--CWVAYQPGYTHDVYALEKMLTILARHGHV 422
F W+ + V K++R K E + F Y GY HD + M+ L
Sbjct: 8 FKWSKNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKF 67
Query: 423 ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFKLML 481
+ + LI +++ + + + I YG + +L+ FH + C P K
Sbjct: 68 KAAEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQK----- 122
Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ---KLF 538
Y ++L L + + A + M G+ P V + + L+ AL ++ V K+F
Sbjct: 123 AYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIK--ALCRNDGTVDAGLKIF 180
Query: 539 SMVRQNGVEPDAYMFKVLIQAYCKY 563
+ + G +PD+Y + LI C++
Sbjct: 181 LEMPKRGCDPDSYTYGTLISGLCRF 205
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 66.6 bits (161), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 106/547 (19%), Positives = 218/547 (39%), Gaps = 65/547 (11%)
Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
L GD+ S+ V F L+ + +LV+S + + + +Y+I+++ +
Sbjct: 68 LFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFC 127
Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
+ + A+ +++ G P+ T ++ + ++ A+ + + M + S
Sbjct: 128 RRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSF 187
Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
+ L+ G R EA +L++ M G P + + + + G I A L++M
Sbjct: 188 TFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKM 247
Query: 303 LPDKRIKNVRYYE---DGSDDDEDENDD-------NNSGVR---IAYGVQLKP------W 343
K V Y D + ++ ND +N G+R + Y ++ W
Sbjct: 248 EQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRW 307
Query: 344 LDPKALANTLDE--WSPEVV--SLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQ 399
D L + + E +P VV S L DA FV +LV E + +
Sbjct: 308 SDASRLLSDMIERKINPNVVTFSALIDA-FVKEGKLV--------EAEKLYDEMIKRSID 358
Query: 400 PGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459
P D++ ++ H ++ + + S T +I + +K+ D
Sbjct: 359 P----DIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDE 414
Query: 460 ALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
++ F + R L G + Y++L+ + + +A V ++M+ G++PD+ T
Sbjct: 415 GMELFREMSQRGLVGNT------VTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMT 468
Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LS 565
+S L+ G + +F ++++ +EPD Y + ++I+ CK LS
Sbjct: 469 YSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLS 528
Query: 566 NSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA-----LRGHIW---AV 617
+ P+ T + ++G ++EA A+ ++ +P +R H+
Sbjct: 529 LKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKA 588
Query: 618 SSADLTR 624
+SA+L R
Sbjct: 589 ASAELIR 595
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 108/262 (41%), Gaps = 17/262 (6%)
Query: 65 RLLDPFIVTHALRSAPNA-------DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR 117
R +DP I T++ S N D A + E + S F N T + L K++R
Sbjct: 355 RSIDPDIFTYS--SLINGFCMHDRLDEAKHMFELMISKDCFP-NVVTYNTLIKGFCKAKR 411
Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI 177
E L ++S + +V + L+ + + + + + + L +Y+I
Sbjct: 412 VDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSI 471
Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
++ GK A+ F + P+ TY +MIE + GK++ ++F +L L
Sbjct: 472 LLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 531
Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQ-EMGFIQGAN 296
+K Y ++ GF +EA +L EM+++G P L R G +
Sbjct: 532 VKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASA 591
Query: 297 EFLREMLPDKRIKNVRYYEDGS 318
E +REM ++ R+ D S
Sbjct: 592 ELIREM------RSCRFVGDAS 607
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 83/204 (40%), Gaps = 1/204 (0%)
Query: 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
+ AL + N + AL++ + N N T ++L L R + L+ D+
Sbjct: 262 IIDALCNYKNVNDALNLFTEM-DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIER 320
Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
K V F L+ + G L ++E +R+ +Y+ +++ + + EA
Sbjct: 321 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 380
Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
F +I + PN TY +I+ ++D +E+F + + + Y L+ G
Sbjct: 381 KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHG 440
Query: 252 FVGVERFDEAKSLLNEMRDDGKFP 275
F D A+ + +M DG P
Sbjct: 441 FFQARECDNAQIVFKQMVSDGVLP 464
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%)
Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
DA+N+ +M+ S P + FS L+ A +V L ++ G+ + Y + +LI
Sbjct: 64 DAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILI 123
Query: 558 QAYCK 562
+C+
Sbjct: 124 NCFCR 128
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 66.6 bits (161), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 3/157 (1%)
Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
G+ D +L AR + E V + +++ G T II YG + D A
Sbjct: 362 GFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLA 421
Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
L+ + D + L G + + Y+ L+ +L K R +A ++ EM+ GI P +QT+S
Sbjct: 422 LQLYKDMKGLSG---RNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSA 478
Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
L+ +A G + + FS + ++G +PD + V++
Sbjct: 479 LICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVML 515
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 95/228 (41%), Gaps = 25/228 (10%)
Query: 399 QPGYTHDVYALEKMLTILARHGHV--ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK 456
Q G D+ + ++ + G + L L+ +R+ G+R T ++
Sbjct: 253 QRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSN 312
Query: 457 ADAALKAFHD-DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515
D A+K F D + C P + Y++++ +C +A + E+ G PD
Sbjct: 313 LDGAVKVFEDMEAHRCQPD-----LWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDA 367
Query: 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------ 563
T++ L+Y FA + + + V++++ +++ G D + +I Y K
Sbjct: 368 VTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKD 427
Query: 564 ---LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
LS N PDA T +L SL K R EAAA+ + P+L
Sbjct: 428 MKGLSGRN--PDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTL 473
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 106/240 (44%), Gaps = 9/240 (3%)
Query: 81 NADSALSI---MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVS 137
N D A+ + MEA + P+ T +A+ +V + E + L ++ F +
Sbjct: 312 NLDGAVKVFEDMEAHRCQPDLW----TYNAMISVYGRCGLAAEAERLFMELELKGFFPDA 367
Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
V + +L+ ++ + E V + + ++ +YN ++ +Y K G+ A++ ++
Sbjct: 368 VTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKD 427
Query: 198 VID-EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
+ G P++ TYTV+I+ L + A + S + + IK T + Y L+ G+
Sbjct: 428 MKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAG 487
Query: 257 RFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
+ +EA+ + M G P A V L+ + + A R+M+ D + YE
Sbjct: 488 KREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYE 547
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
G + V ++ +L L G +E + ++ +L+ G ++ S+I L++D + +
Sbjct: 817 GPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNI-FE 875
Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
+K + G + +L Y ++ L K KR DA ++ EM + ++ ++
Sbjct: 876 VKKIYSSMKAAGYLPTIRL---YRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNS 932
Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
++ + D K +++ +++ G+EPD + LI YC+
Sbjct: 933 MLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCR 974
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 83/358 (23%), Positives = 133/358 (37%), Gaps = 42/358 (11%)
Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG---KNFEAVETFRQVI 199
+M YS SG + RQR + S+N +++ K+G N AVE V
Sbjct: 231 MMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNL-AVELLDMVR 289
Query: 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY--LILVEGFVGVER 257
+ G P++ TY ++ LD A++VF + R + Y +I V G G+
Sbjct: 290 NSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAA 349
Query: 258 FDEAKSLLNEMRDDGKFPG-----------------RAMRVALERMQEMGFIQGANEFLR 300
EA+ L E+ G FP ++ ++MQ+MGF G +E
Sbjct: 350 --EAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGF--GKDEMTY 405
Query: 301 EMLPDKRIKNVRYYEDGSDDDEDENDDNNSGV--RIAYGVQLKPWLDPKALANTLDEWSP 358
+ Y + G D + + G+ R + +D AN E +
Sbjct: 406 NTIIH------MYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVE-AA 458
Query: 359 EVVSLLADAKFVWT----TRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT 414
++S + D T + L+C + K E F C + + G D A ML
Sbjct: 459 ALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCML--RSGTKPDNLAYSVMLD 516
Query: 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
+L R L + SDG ++ L+I ++D K D LCG
Sbjct: 517 VLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEELCG 574
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 41/108 (37%), Gaps = 14/108 (12%)
Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------ 562
VQ ++ +M ++ G Q+L +RQ G PD F LI A K
Sbjct: 225 VQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVEL 284
Query: 563 --YLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608
+ NS L PDA T L + ++ A V E E P L
Sbjct: 285 LDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDL 332
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 65.9 bits (159), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 79/159 (49%), Gaps = 4/159 (2%)
Query: 404 HDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKA 463
DV++ +L + + G ++L ++A++ + + +ID + + + D AL
Sbjct: 372 QDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNL 431
Query: 464 FHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
F + R L + + Y++LL TK R +A+++L EM GI DV T++ L+
Sbjct: 432 FGEMRYLGIALDRVS----YNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLG 487
Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
+ QG V+K+F+ +++ V P+ + LI Y K
Sbjct: 488 GYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSK 526
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 79/178 (44%), Gaps = 1/178 (0%)
Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
V++ ++ ++ +G + L+ + E R L SYN ++S+Y K G++ EA++ R+
Sbjct: 410 VSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILRE 469
Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
+ G + TY ++ GK D +VF+ + + Y L++G+
Sbjct: 470 MASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGL 529
Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
+ EA + E + G + AL + + + G + A + EM + NV Y
Sbjct: 530 YKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTY 587
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 6/167 (3%)
Query: 112 LAKSQRNHELKTLIGDISSSKFLNVS---VNFMNLMQWYSTSGDLELVLSTWNEYRQRAK 168
AK+ R E L G++ ++L ++ V++ L+ Y+ G E L E
Sbjct: 419 FAKAGRFDEALNLFGEM---RYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGI 475
Query: 169 LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALE 228
+YN ++ Y K GK E + F ++ E +PN TY+ +I+ G A+E
Sbjct: 476 KKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAME 535
Query: 229 VFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
+F ++ Y L++ A SL++EM +G P
Sbjct: 536 IFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISP 582
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 59/135 (43%)
Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
+ F +L+ S G E + ++E R SYN ++ K G+ A E Q
Sbjct: 340 ITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQ 399
Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
+ + +PN +Y+ +I+ G+ D AL +F + + I Y L+ + V R
Sbjct: 400 MPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGR 459
Query: 258 FDEAKSLLNEMRDDG 272
+EA +L EM G
Sbjct: 460 SEEALDILREMASVG 474
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 80/197 (40%), Gaps = 23/197 (11%)
Query: 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC 471
M++ L R+G V + R+ + G +I YG S + A+ F+
Sbjct: 239 MISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNS----- 293
Query: 472 GPISKFKL---MLLYSSLLRTLTKCKRDFDAI-NVLEEMIFSGIVPDVQTFSGLMYHFAL 527
+ ++ L ++ Y++++ K +F + +EM +G+ PD TF+ L+ +
Sbjct: 294 --MKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSR 351
Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAAT 575
G + + LF + +E D + + L+ A CK + +MP+ +
Sbjct: 352 GGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVS 411
Query: 576 KELLKKSLWKEGRRKEA 592
+ K GR EA
Sbjct: 412 YSTVIDGFAKAGRFDEA 428
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/199 (18%), Positives = 86/199 (43%), Gaps = 1/199 (0%)
Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
T ++L V ++ + L ++++ + ++ L+ G ++L +
Sbjct: 341 TFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQM 400
Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
+ + + SY+ V+ +AK G+ EA+ F ++ G + +Y ++ +G+
Sbjct: 401 PVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRS 460
Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVA 282
+ AL++ + + IK+ Y L+ G+ ++DE K + EM+ + P
Sbjct: 461 EEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTL 520
Query: 283 LERMQEMGFIQGANEFLRE 301
++ + G + A E RE
Sbjct: 521 IDGYSKGGLYKEAMEIFRE 539
Score = 40.8 bits (94), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 51/257 (19%), Positives = 93/257 (36%), Gaps = 44/257 (17%)
Query: 396 VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455
A+ GY + VYA +++ R G E + ++ G+R T +ID G
Sbjct: 258 TAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGG 317
Query: 456 KADAALKAFHDD-------------RTLCGPISKFKL-------------------MLLY 483
+ F D+ +L S+ L + Y
Sbjct: 318 MEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSY 377
Query: 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543
++LL + K + A +L +M I+P+V ++S ++ FA G LF +R
Sbjct: 378 NTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRY 437
Query: 544 NGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKE 591
G+ D + L+ Y K +++ + D T L K+G+ E
Sbjct: 438 LGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDE 497
Query: 592 AAAVEERCEKINDVPSL 608
V ++ + +P+L
Sbjct: 498 VKKVFTEMKREHVLPNL 514
Score = 40.0 bits (92), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 66/149 (44%)
Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
+ + L ++ K R+ E ++ +++S V + L+ Y G + V + E
Sbjct: 446 SYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEM 505
Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
++ L + +Y+ ++ Y+K G EA+E FR+ G + Y+ +I+ L G +
Sbjct: 506 KREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLV 565
Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGF 252
SA+ + + I Y +++ F
Sbjct: 566 GSAVSLIDEMTKEGISPNVVTYNSIIDAF 594
Score = 36.2 bits (82), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 59/126 (46%), Gaps = 4/126 (3%)
Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
G DV +L + G + V ++ +++ + + T +ID Y A
Sbjct: 474 GIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEA 533
Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
++ F + ++ G + ++LYS+L+ L K A+++++EM GI P+V T++
Sbjct: 534 MEIFREFKS-AGLRAD---VVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNS 589
Query: 521 LMYHFA 526
++ F
Sbjct: 590 IIDAFG 595
Score = 32.7 bits (73), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 47/121 (38%)
Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
T +AL K + E+K + ++ L + + L+ YS G + + + E+
Sbjct: 481 TYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREF 540
Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
+ Y+ ++ K G AV ++ EG PN TY +I+ +
Sbjct: 541 KSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATM 600
Query: 224 D 224
D
Sbjct: 601 D 601
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/394 (18%), Positives = 160/394 (40%), Gaps = 37/394 (9%)
Query: 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231
T +Y+ ++S Y K G+N A+ F ++ D P + YT ++ +GK++ AL++F
Sbjct: 233 TITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFE 292
Query: 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA-MRVALERMQEMG 290
+ T Y L++G R DEA +M DG P + + + ++G
Sbjct: 293 EMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVG 352
Query: 291 FIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALA 350
++ EM + V ++Y +K + KA
Sbjct: 353 RVEELTNVFSEMGMWRCTPTV----------------------VSYNTVIKALFESKAHV 390
Query: 351 NTLDEWSPEV-VSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY 407
+ + W ++ ++ ++F ++ + CK R K+ + G+
Sbjct: 391 SEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKA-----LLLLEEMDEKGFPPCPA 445
Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDD 467
A ++ L + E + L +L+ + + ++I +G K A+ F++
Sbjct: 446 AYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEM 505
Query: 468 RTL-CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526
+ GP + Y++L+ + K +A ++L +M +G D+ + + ++ FA
Sbjct: 506 KNQGSGPD-----VYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFA 560
Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
G + ++F ++ +G++PD + L+ +
Sbjct: 561 RTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCF 594
Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 92/200 (46%), Gaps = 2/200 (1%)
Query: 105 LHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYR 164
L+ L +L K R EL + ++ + V++ +++ S +S+W +
Sbjct: 341 LNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKM 400
Query: 165 QRAKLLSTE-SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
+ + +E +Y+I++ Y KT + +A+ ++ ++G P Y +I L +
Sbjct: 401 KADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRY 460
Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-RAMRVA 282
++A E+F L +S+ Y ++++ F + EA L NEM++ G P A
Sbjct: 461 EAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNAL 520
Query: 283 LERMQEMGFIQGANEFLREM 302
+ M + G I AN LR+M
Sbjct: 521 MSGMVKAGMINEANSLLRKM 540
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 81/191 (42%), Gaps = 3/191 (1%)
Query: 83 DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
+ AL ++E + F + +L L K++R L ++ + F NVS
Sbjct: 426 EKALLLLEEM-DEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKEN-FGNVSSRVYA 483
Query: 143 LM-QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
+M + + G L + +NE + + +YN +MS K G EA R++ +
Sbjct: 484 VMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEEN 543
Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
G + ++ +++ G A+E+F + IK Y L+ F F+EA
Sbjct: 544 GCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEA 603
Query: 262 KSLLNEMRDDG 272
++ EM+D G
Sbjct: 604 ARMMREMKDKG 614
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 59/130 (45%)
Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
L+ Y + +E L E ++ +Y +++ K + A E F+++ +
Sbjct: 415 LIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENF 474
Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
+SR Y VMI+H GKL A+++F+ + Y L+ G V +EA
Sbjct: 475 GNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEAN 534
Query: 263 SLLNEMRDDG 272
SLL +M ++G
Sbjct: 535 SLLRKMEENG 544
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 93/253 (36%), Gaps = 20/253 (7%)
Query: 355 EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT 414
+W P+ L K RLV +L FF W + + HD ++
Sbjct: 75 KWGPDAEKALEVLKLKVDHRLVRSILEIDVEINVKIQFFKWAGKRRNFQHDCSTYMTLIR 134
Query: 415 ILARHG-HVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CG 472
L + E+ + +R+ + + + + ++ G +K AL F+ + C
Sbjct: 135 CLEEARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQAKGRKCK 194
Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSG-IVPDVQTFSGLMYHFALQGDE 531
P S Y+S++ L + + V EM G PD T+S L+ + G
Sbjct: 195 PTSS-----TYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRN 249
Query: 532 KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELL 579
+LF ++ N ++P ++ L+ Y K + + P T L
Sbjct: 250 DSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTEL 309
Query: 580 KKSLWKEGRRKEA 592
K L K GR EA
Sbjct: 310 IKGLGKAGRVDEA 322
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 66/159 (41%), Gaps = 16/159 (10%)
Query: 447 IIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506
+I+ G +K+ +AA + F + + G +S +Y+ +++ KC + +A+++ EM
Sbjct: 450 LINALGKAKRYEAANELFKELKENFGNVSS----RVYAVMIKHFGKCGKLSEAVDLFNEM 505
Query: 507 IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK---- 562
G PDV ++ LM G L + +NG D +++ + +
Sbjct: 506 KNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVP 565
Query: 563 --------YLSNSNLMPDAATKELLKKSLWKEGRRKEAA 593
+ +S + PD T L G +EAA
Sbjct: 566 RRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAA 604
Score = 37.0 bits (84), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 9/165 (5%)
Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
QP T +Y +L I + G VE L +++ G T +I G + + D
Sbjct: 265 QP--TEKIYTT--LLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVD 320
Query: 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
A F+ D G ++ ++L+ L K R + NV EM P V ++
Sbjct: 321 EAY-GFYKDMLRDGLTPD---VVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSY 376
Query: 519 SGLMYH-FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
+ ++ F + V F ++ + V P + + +LI YCK
Sbjct: 377 NTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCK 421
>sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470,
mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2
SV=1
Length = 599
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/312 (20%), Positives = 126/312 (40%), Gaps = 51/312 (16%)
Query: 316 DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEW---SPEVVSLLADAKFVWT 372
DG D++ + DN+ ++ + + + +DE + ++L + K +
Sbjct: 101 DGCDEEVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLS 160
Query: 373 TRLVCKVL---RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
L+ +VL RH + P A+ FFCW A + G+ HD M++ILA+ E + ++
Sbjct: 161 HDLIVEVLERFRHARKP--AFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVL 218
Query: 430 AKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF------------HDDRTLCGPISKF 477
++ + G+ L T + + + +K+ A+ F L + +
Sbjct: 219 EEMGTKGL-LTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRA 277
Query: 478 KL------------------MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
KL M+ Y+ LL + + +A + +MI G+ PD+ +
Sbjct: 278 KLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHN 337
Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLS------------NS 567
++ + KLF +++ G P+ + ++I+ +CK S +S
Sbjct: 338 VMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDS 397
Query: 568 NLMPDAATKELL 579
L PDAA L
Sbjct: 398 GLQPDAAVYTCL 409
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 89/205 (43%), Gaps = 2/205 (0%)
Query: 71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
I A +A A+ I E +K F T++ L L +++ E + L D
Sbjct: 234 IAMKAFAAAKERKKAVGIFELMKKY-KFKIGVETINCLLDSLGRAKLGKEAQVLF-DKLK 291
Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
+F + + L+ + +L WN+ + ++N+++ ++ K +
Sbjct: 292 ERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSD 351
Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
A++ F + +G PN R+YT+MI +++A+E F + ++ + Y L+
Sbjct: 352 AIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLIT 411
Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP 275
GF ++ D LL EM++ G P
Sbjct: 412 GFGTQKKLDTVYELLKEMQEKGHPP 436
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 9/123 (7%)
Query: 454 SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP 513
S+K A+K FH ++ GP + Y+ ++R K AI ++M+ SG+ P
Sbjct: 346 SRKKSDAIKLFHVMKSK-GPCPNVRS---YTIMIRDFCKQSSMETAIEYFDDMVDSGLQP 401
Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDA 573
D ++ L+ F Q V +L +++ G PD + LI K ++N MP+
Sbjct: 402 DAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALI----KLMANQK-MPEH 456
Query: 574 ATK 576
AT+
Sbjct: 457 ATR 459
Score = 40.4 bits (93), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
+Y+ L+ K+ +L+EM G PD +T++ L+ A Q + ++++ +
Sbjct: 405 VYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKM 464
Query: 542 RQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSL 583
QN +EP + F +++++Y +++ + M A +E++KK +
Sbjct: 465 IQNEIEPSIHTFNMIMKSY--FMARNYEMGRAVWEEMIKKGI 504
Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 43/81 (53%)
Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
++ ++ +L L + ++ DAI + M G P+V++++ ++ F Q + + F
Sbjct: 333 IVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFD 392
Query: 540 MVRQNGVEPDAYMFKVLIQAY 560
+ +G++PDA ++ LI +
Sbjct: 393 DMVDSGLQPDAAVYTCLITGF 413
Score = 33.5 bits (75), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 31/173 (17%), Positives = 70/173 (40%), Gaps = 13/173 (7%)
Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
G +V + M+ + +E + G++ + +I +G KK D
Sbjct: 363 GPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTV 422
Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
+ + + P Y++L++ + K A + +MI + I P + TF+
Sbjct: 423 YELLKEMQEKGHPPDG----KTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNM 478
Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY---------CKYL 564
+M + + + ++ + ++ + + G+ PD + VLI+ C+YL
Sbjct: 479 IMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYL 531
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 103/260 (39%), Gaps = 13/260 (5%)
Query: 65 RLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNH 119
R +DP I T+ D A + E + S F + T + L KS+R
Sbjct: 284 RSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFP-DLDTYNTLIKGFCKSKRVE 342
Query: 120 ELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM 179
+ L ++S + +V + L+Q GD + + + +Y+I++
Sbjct: 343 DGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILL 402
Query: 180 SVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIK 239
GK +A+E F + + YT MIE + GK+D ++F +L L +K
Sbjct: 403 DGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVK 462
Query: 240 RTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQ-EMGFIQGANEF 298
Y ++ G EA +LL +M++DG P L R G + E
Sbjct: 463 PNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAEL 522
Query: 299 LREMLPDKRIKNVRYYEDGS 318
+REM ++ R+ D S
Sbjct: 523 IREM------RSCRFVGDAS 536
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 79/190 (41%), Gaps = 16/190 (8%)
Query: 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS 475
L + G ++L L+ K+ + + IID + D AL F + T
Sbjct: 160 LCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETK----G 215
Query: 476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQ 535
++ YSSL+ L R DA +L +MI I P++ TF+ L+ F +G +
Sbjct: 216 IRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAE 275
Query: 536 KLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSL 583
KL + + ++PD + + LI +C +++ + + PD T L K
Sbjct: 276 KLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGF 335
Query: 584 WKEGRRKEAA 593
K R ++
Sbjct: 336 CKSKRVEDGT 345
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 9/136 (6%)
Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
Y++L++ K KR D + EM G+V D T++ L+ GD QK+F +
Sbjct: 328 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 387
Query: 543 QNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCE-- 600
+GV PD + +L+ C +N L + ++KS K +E C+
Sbjct: 388 SDGVPPDIMTYSILLDGLC---NNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAG 444
Query: 601 KIND----VPSLALRG 612
K++D SL+L+G
Sbjct: 445 KVDDGWDLFCSLSLKG 460
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 91/551 (16%), Positives = 200/551 (36%), Gaps = 89/551 (16%)
Query: 97 NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
SHN T + L + + L+G + + V +L+ Y +
Sbjct: 40 GISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDA 99
Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
++ ++ + T ++ ++ K EAV +++ G PN TY V++
Sbjct: 100 VALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG 159
Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276
L G +D A + + + +I+ + +++ D+A +L EM G P
Sbjct: 160 LCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPN 219
Query: 277 RAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIA 335
+L + G A++ L +M+ K
Sbjct: 220 VVTYSSLISCLCSYGRWSDASQLLSDMIEKK----------------------------- 250
Query: 336 YGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCW 395
++P L ++ + + + + KFV +L +++ P
Sbjct: 251 --------INP-----NLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDP--------- 288
Query: 396 VAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455
D++ ++ H ++ ++ + S T +I + SK
Sbjct: 289 ---------DIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSK 339
Query: 456 KADAALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP 513
+ + + F + R L G + Y++L++ L +A V ++M+ G+ P
Sbjct: 340 RVEDGTELFREMSHRGLVGDT------VTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPP 393
Query: 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY---------- 563
D+ T+S L+ G + ++F ++++ ++ D Y++ +I+ CK
Sbjct: 394 DIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLF 453
Query: 564 --LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA-----LRGHIW- 615
LS + P+ T + L + +EA A+ ++ ++ +P +R H+
Sbjct: 454 CSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRD 513
Query: 616 --AVSSADLTR 624
+SA+L R
Sbjct: 514 GDKAASAELIR 524
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 10/160 (6%)
Query: 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465
++ K+L+ +A+ +LV L K++ G+ T ++I+ + + AL
Sbjct: 10 IFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLAL---- 65
Query: 466 DDRTLCGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522
L G + K ++ SSLL KR DA+ ++++M+ G PD TF+ L+
Sbjct: 66 ---ALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLI 122
Query: 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
+ L L + Q G +P+ + V++ CK
Sbjct: 123 HGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCK 162
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 86/198 (43%), Gaps = 4/198 (2%)
Query: 82 ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM 141
A +ME PN + +H KS+R + + ++S + ++ +
Sbjct: 312 ARQMFYLMERNGCYPNEVIYTTLIHGFC----KSKRVEDGMKIFYEMSQKGVVANTITYT 367
Query: 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201
L+Q Y G ++ +N+ R +YN+++ GK +A+ F +
Sbjct: 368 VLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKR 427
Query: 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261
N TYT++I+ + LGK++ A ++F +L +K Y ++ GF EA
Sbjct: 428 EMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEA 487
Query: 262 KSLLNEMRDDGKFPGRAM 279
SL +M++DG P ++
Sbjct: 488 DSLFKKMKEDGFLPNESV 505
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 78/179 (43%), Gaps = 1/179 (0%)
Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
V + L+ + S +E + + E Q+ + +T +Y +++ Y G+ A E F Q
Sbjct: 329 VIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQ 388
Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
+ A P+ RTY V+++ L GK++ AL +F + + Y I+++G + +
Sbjct: 389 MSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGK 448
Query: 258 FDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYE 315
++A L + G P + G I A+ ++M D + N Y+
Sbjct: 449 VEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVYK 507
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 89/449 (19%), Positives = 159/449 (35%), Gaps = 58/449 (12%)
Query: 37 LRRAQLIDSIRLAVRSNSSNSLSSLLN-DRLLDPFIVTHALRSAPNADSALSIMEALKSN 95
L Q D++ L R S L S+++ RLL V + S M+ L
Sbjct: 59 LHNLQFNDALDLFTRMVHSRPLPSIIDFTRLLS---VIAKMNRYDVVISLFEQMQILGIP 115
Query: 96 PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLEL 155
P +H + S + +G + F V F +L+ Y +E
Sbjct: 116 PLLCTCNIVMHCVCL----SSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIED 171
Query: 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215
++ +++ + +Y ++ K AVE F Q+ G+ PN TY ++
Sbjct: 172 AIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVT 231
Query: 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
L +G+ A + + RI+ + L++ FV V + EAK L N M +P
Sbjct: 232 GLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYP 291
Query: 276 ----------GRAMRVALERMQEMGFI---QGA--NEFLREMLPDKRIKNVRYYEDGSDD 320
G M L+ ++M ++ G NE + L K+ R EDG
Sbjct: 292 DVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKR-VEDGMKI 350
Query: 321 DEDENDDNNSGVRIAYGVQLKPWL---DPKALANTLDEWS-----PEVVS-------LLA 365
+ + I Y V ++ + P ++ S P++ + L
Sbjct: 351 FYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCC 410
Query: 366 DAKF------------------VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY 407
+ K + T ++ + + E A+ FC + + G +V
Sbjct: 411 NGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSL-FSKGMKPNVI 469
Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDG 436
M++ R G + D L K++ DG
Sbjct: 470 TYTTMISGFCRRGLIHEADSLFKKMKEDG 498
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
++Y++L+ K KR D + + EM G+V + T++ L+ + L G + Q++F+
Sbjct: 329 VIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQ 388
Query: 541 VRQNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGR 588
+ PD + VL+ C +Y+ + + T ++ + + K G+
Sbjct: 389 MSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGK 448
Query: 589 RKEA 592
++A
Sbjct: 449 VEDA 452
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 71/165 (43%), Gaps = 10/165 (6%)
Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR-LIIDFYGISKKADA 459
G+ +V ++ L ++ H+ L ++ ++G R T L+ I + DA
Sbjct: 183 GFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDA 242
Query: 460 A--LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
A L+ R I+ +++L+ K + +A + MI + PDV T
Sbjct: 243 AWLLRDMMKRRIEPNVIT-------FTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFT 295
Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
+ L+ + G +++F ++ +NG P+ ++ LI +CK
Sbjct: 296 YGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCK 340
Score = 41.2 bits (95), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
Y++L+ L + R DA +L +M+ I P+V TF+ L+ F G ++L++++
Sbjct: 226 YNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMI 285
Query: 543 QNGVEPDAYMFKVLIQAYCKY 563
Q V PD + + LI C Y
Sbjct: 286 QMSVYPDVFTYGSLINGLCMY 306
Score = 35.8 bits (81), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 29/155 (18%), Positives = 67/155 (43%), Gaps = 10/155 (6%)
Query: 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470
++L+++A+ ++V L +++ G+ T +++ +S + A
Sbjct: 88 RLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRA-------SCF 140
Query: 471 CGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
G + K ++ ++SLL R DAI + ++++ G P+V T++ L+
Sbjct: 141 LGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCK 200
Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
+LF+ + NG P+ + L+ C+
Sbjct: 201 NRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCE 235
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%)
Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
++ LL + K R I++ E+M GI P + T + +M+ L +
Sbjct: 86 FTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMM 145
Query: 543 QNGVEPDAYMFKVLIQAYCKY 563
+ G EPD F L+ YC +
Sbjct: 146 KLGFEPDLVTFTSLLNGYCHW 166
>sp|Q9ZUA2|PP141_ARATH Pentatricopeptide repeat-containing protein At2g01740
OS=Arabidopsis thaliana GN=At2g01740 PE=3 SV=1
Length = 559
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 86/400 (21%), Positives = 167/400 (41%), Gaps = 59/400 (14%)
Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
+Y+ + + K+G+ A+++F + + PN T+T +I+ G L+ A+ ++ +
Sbjct: 165 TYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEM 224
Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFI 292
+R+ Y L++GF A+ + + M +D P + + + + G
Sbjct: 225 RRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDS 284
Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRI---AYGVQLKPWLDPKAL 349
A +FL +ML N G+R+ AYGV + L
Sbjct: 285 DNAMKFLAKML-------------------------NQGMRLDITAYGVIISGLCGNGKL 319
Query: 350 ANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPE-----TAWHFFCWVAYQPGYTH 404
+ S L ++TT + +FKS +H ++P
Sbjct: 320 KEATEIVEDMEKSDLVPDMVIFTTMMN----AYFKSGRMKAAVNMYHKLIERGFEP---- 371
Query: 405 DVYALEKMLTILARHGHV-ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKA 463
DV AL M+ +A++G + E + + +D M ++ID + K+ D
Sbjct: 372 DVVALSTMIDGIAKNGQLHEAIVYFCIEKANDVM------YTVLID--ALCKEGD----- 418
Query: 464 FHDDRTLCGPISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
F + L IS+ L+ +Y+S + L K DA + M+ G++ D+ ++
Sbjct: 419 FIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTRMVQEGLLLDLLAYTT 478
Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
L+Y A +G +++F + +G+ PD+ +F +LI+AY
Sbjct: 479 LIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDLLIRAY 518
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 67/138 (48%)
Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
V F L+ Y +GDLE+ +S + E R+ L+ +Y ++ + K G+ A E + +
Sbjct: 199 VTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSR 258
Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
++++ PNS YT +I+ G D+A++ + + ++ Y +++ G G +
Sbjct: 259 MVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGK 318
Query: 258 FDEAKSLLNEMRDDGKFP 275
EA ++ +M P
Sbjct: 319 LKEATEIVEDMEKSDLVP 336
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 106/241 (43%), Gaps = 4/241 (1%)
Query: 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
+ H L D A+S++E + S+ N T L L K +R + L+ +
Sbjct: 298 LIHGLCLKGKLDKAVSLLERMVSSKCIP-NDVTYGTLINGLVKQRRATDAVRLLSSMEER 356
Query: 132 KF-LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
+ LN + + L+ G E +S W + ++ + Y++++ + GK E
Sbjct: 357 GYHLNQHI-YSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNE 415
Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
A E ++I G +PN+ TY+ +++ G + A++V+ + R Y +L++
Sbjct: 416 AKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLID 475
Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIK 309
G GV R EA + ++M G P A ++ + +G + A + EML + K
Sbjct: 476 GLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPK 535
Query: 310 N 310
+
Sbjct: 536 S 536
Score = 62.8 bits (151), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 111/512 (21%), Positives = 213/512 (41%), Gaps = 66/512 (12%)
Query: 92 LKSNP---NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS 148
KS P +F STL ++ A S ++ L+ I + + +F+ + + Y
Sbjct: 64 FKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVIIERSFIVVFRAYG 123
Query: 149 TS----GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA- 203
+ ++L +E+R + S +S+N V++V G +E + V++
Sbjct: 124 KAHLPDKAVDLFHRMVDEFRCKR---SVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMN 180
Query: 204 ---IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260
PN ++ ++I+ L L +D A+EVF +P + Y L++G ER DE
Sbjct: 181 MNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDE 240
Query: 261 AKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGA-----NEFLREMLPDKRIKNVRYY 314
A LL+EM+ +G P + V ++ + + G + N FL+ +P++ N +
Sbjct: 241 AVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIH 300
Query: 315 EDGSDDDEDEN--------------DDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEV 360
D+ +D G I V+ + D L ++++E +
Sbjct: 301 GLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHL 360
Query: 361 VSLLADAKFVWTTRLVCKVLRHFKSPE--TAWHFFCWVAYQPGYTHDVYALEKMLTILAR 418
+ +++ L+ + + K+ E + W +P VY++ ++ L R
Sbjct: 361 ------NQHIYSV-LISGLFKEGKAEEAMSLWRKMAEKGCKPNIV--VYSV--LVDGLCR 409
Query: 419 HGHV----ELVDRLIAKLRSDGMRLPFSTIRLIIDFY--GISKKADAALKAFHDDRTLCG 472
G E+++R+IA S + ++ L+ F+ G+ ++A K D+T C
Sbjct: 410 EGKPNEAKEILNRMIA---SGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEM--DKTGCS 464
Query: 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532
+KF YS L+ L R +A+ V +M+ GI PD +S ++ G
Sbjct: 465 R-NKF----CYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMD 519
Query: 533 IVQKLF-SMVRQN--GVEPDAYMFKVLIQAYC 561
KL+ M+ Q +PD + +L+ C
Sbjct: 520 AALKLYHEMLCQEEPKSQPDVVTYNILLDGLC 551
Score = 38.9 bits (89), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 24/151 (15%)
Query: 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
Y +L+ L K +R +A+ +L+EM G P ++ L+ +GD V KL +
Sbjct: 225 YCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMF 284
Query: 543 QNGVEPDAYMFKVLIQAYC------------KYLSNSNLMPDAATKELLKKSLWKEGRRK 590
G P+ + LI C + + +S +P+ T L L K+ R
Sbjct: 285 LKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAT 344
Query: 591 EA----AAVEERCEKINDVPSLALRGHIWAV 617
+A +++EER +N HI++V
Sbjct: 345 DAVRLLSSMEERGYHLNQ--------HIYSV 367
Score = 37.4 bits (85), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 89/239 (37%), Gaps = 50/239 (20%)
Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDD 467
L M+ A G + V++L++++R + + + ++ YG + D A+ FH
Sbjct: 79 TLSSMIESYANSGDFDSVEKLLSRIRLENRVIIERSFIVVFRAYGKAHLPDKAVDLFHR- 137
Query: 468 RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAIN-VLEEMIFSGIVPDVQTFSGLMYHFA 526
+ +F +CKR + N VL +I G +YH
Sbjct: 138 -----MVDEF--------------RCKRSVKSFNSVLNVIINEG-----------LYHRG 167
Query: 527 LQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAA 574
L+ + +V +M + P+ F ++I+A CK + +PD
Sbjct: 168 LEFYDYVVNSNMNM----NISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGY 223
Query: 575 TKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHI--WAVSSADLTRVHSIYRN 631
T L L KE R EA + + + PS + + DLTRV + N
Sbjct: 224 TYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDN 282
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 95/453 (20%), Positives = 174/453 (38%), Gaps = 54/453 (11%)
Query: 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218
+ E+ + + SYNIV+ + G+ EA + +G P+ +Y+ ++
Sbjct: 233 VFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYC 292
Query: 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA 278
G+LD ++ + +K S Y ++ + + EA+ +EM G P
Sbjct: 293 RFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTV 352
Query: 279 MRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYG 337
+ L + + G I+ A++F +YE S D D + I G
Sbjct: 353 VYTTLIDGFCKRGDIRAASKF--------------FYEMHS---RDITPDVLTYTAIISG 395
Query: 338 -VQLKPWLDPKALANTL--DEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFC 394
Q+ ++ L + + P+ V+ F CK + H
Sbjct: 396 FCQIGDMVEAGKLFHEMFCKGLEPDSVT------FTELINGYCKAGHMKDAFRVHNHMI- 448
Query: 395 WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS 454
Q G + +V ++ L + G ++ + L+ ++ G++ T I++ S
Sbjct: 449 ----QAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKS 504
Query: 455 KKADAALKAFHDDRTLCGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
+ A+K L G L + Y++L+ K A +L+EM+ G+
Sbjct: 505 GNIEEAVK-------LVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGL 557
Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC---------- 561
P + TF+ LM F L G + +KL + + G+ P+A F L++ YC
Sbjct: 558 QPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATA 617
Query: 562 --KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
K + + + PD T E L K K KEA
Sbjct: 618 IYKDMCSRGVGPDGKTYENLVKGHCKARNMKEA 650
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 89/436 (20%), Positives = 169/436 (38%), Gaps = 33/436 (7%)
Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
+++ ++ Y G+L+ V +++ ++ Y ++ + + K EA E F +
Sbjct: 282 ISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSE 341
Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
+I +G +P++ YT +I+ G + +A + F + I Y ++ GF +
Sbjct: 342 MIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGD 401
Query: 258 FDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
EA L +EM G P L + G ++ A M+ NV Y
Sbjct: 402 MVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTT 461
Query: 317 GSDD--DEDENDDNNSGVRIAYGVQLKP-WLDPKALANTLDEWS--PEVVSLLAD----- 366
D E + D N + + + L+P ++ N L + E V L+ +
Sbjct: 462 LIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG 521
Query: 367 --AKFVWTTRLV---CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGH 421
A V T L+ CK K+ E G + ++ HG
Sbjct: 522 LNADTVTYTTLMDAYCKSGEMDKAQEILKEML-----GKGLQPTIVTFNVLMNGFCLHGM 576
Query: 422 VELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC----GPISKF 477
+E ++L+ + + G+ +T ++ Y I AA + D +C GP K
Sbjct: 577 LEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKD---MCSRGVGPDGK- 632
Query: 478 KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL 537
Y +L++ K + +A + +EM G V T+S L+ F + +++
Sbjct: 633 ----TYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREV 688
Query: 538 FSMVRQNGVEPDAYMF 553
F +R+ G+ D +F
Sbjct: 689 FDQMRREGLAADKEIF 704
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/248 (20%), Positives = 102/248 (41%), Gaps = 14/248 (5%)
Query: 29 FTNKLALYLRRAQLIDSIRL---AVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSA 85
FT + Y + + D+ R+ +++ S ++ + L+D L SA +
Sbjct: 424 FTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTT--LIDGLCKEGDLDSA---NEL 478
Query: 86 LSIMEALKSNPN-FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144
L M + PN F++N ++ L KS E L+G+ ++ +V + LM
Sbjct: 479 LHEMWKIGLQPNIFTYN-----SIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLM 533
Query: 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204
Y SG+++ E + + ++N++M+ + G + + ++ +G
Sbjct: 534 DAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIA 593
Query: 205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL 264
PN+ T+ +++ L +A ++ + + K Y LV+G EA L
Sbjct: 594 PNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFL 653
Query: 265 LNEMRDDG 272
EM+ G
Sbjct: 654 FQEMKGKG 661
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 84/458 (18%), Positives = 179/458 (39%), Gaps = 64/458 (13%)
Query: 169 LLSTESYNIVMSVYAKTG-KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227
+LS +S N+ ++ +K K A+ FR+ + G N +Y ++I + LG++ A
Sbjct: 207 VLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAH 266
Query: 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA----L 283
+ + L Y +V G+ D+ L+ M+ G P + + L
Sbjct: 267 HLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLL 326
Query: 284 ERMQEMGFIQGA-NEFLRE-MLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLK 341
R+ ++ + A +E +R+ +LPD + D + D + + Y + +
Sbjct: 327 CRICKLAEAEEAFSEMIRQGILPDTVVYTTLI------DGFCKRGDIRAASKFFYEMHSR 380
Query: 342 PWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPG 401
+ +P+V++ A C++ ++ + FC G
Sbjct: 381 -------------DITPDVLTYTA------IISGFCQIGDMVEAGKLFHEMFC-----KG 416
Query: 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA--DA 459
D +++ + GH++ R+ + G T +ID G+ K+ D+
Sbjct: 417 LEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLID--GLCKEGDLDS 474
Query: 460 ALKAFHDDRTLCGPISKFKL---MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
A + H+ + K L + Y+S++ L K +A+ ++ E +G+ D
Sbjct: 475 ANELLHE-------MWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTV 527
Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYL 564
T++ LM + G+ Q++ + G++P F VL+ +C ++
Sbjct: 528 TYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 587
Query: 565 SNSNLMPDAAT-KELLKKSLWKEGRRKEAAAVEERCEK 601
+ P+A T L+K+ + + A ++ C +
Sbjct: 588 LAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSR 625
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 74/193 (38%), Gaps = 1/193 (0%)
Query: 83 DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
D ++E +K N ++ +L + + E + ++ L +V +
Sbjct: 298 DKVWKLIEVMKRK-GLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTT 356
Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
L+ + GD+ + E R +Y ++S + + G EA + F ++ +G
Sbjct: 357 LIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKG 416
Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
P+S T+T +I G + A V + + Y L++G D A
Sbjct: 417 LEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSAN 476
Query: 263 SLLNEMRDDGKFP 275
LL+EM G P
Sbjct: 477 ELLHEMWKIGLQP 489
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 55/139 (39%)
Query: 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFR 196
SV F L+ Y +G ++ N Q + +Y ++ K G A E
Sbjct: 421 SVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLH 480
Query: 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256
++ G PN TY ++ L G ++ A+++ + + Y L++ +
Sbjct: 481 EMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSG 540
Query: 257 RFDEAKSLLNEMRDDGKFP 275
D+A+ +L EM G P
Sbjct: 541 EMDKAQEILKEMLGKGLQP 559
>sp|Q9SVH3|PP328_ARATH Pentatricopeptide repeat-containing protein At4g20740
OS=Arabidopsis thaliana GN=At4g20740 PE=3 SV=1
Length = 727
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 107/248 (43%), Gaps = 24/248 (9%)
Query: 348 ALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY 407
A + W P VVS L + V T +V +VL+ A FF W Q GY HD
Sbjct: 101 AFRKNRNHWGPSVVSELNKLRRV-TPSIVAEVLKLGNDAAVAAKFFHWAGKQKGYKHDFA 159
Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDD 467
A L R+GH D+L + S G ++I + +++ L+ ++
Sbjct: 160 AYNAFAYCLNRNGHFRAADQLPELMDSQGRPPSEKQFEILIRMHADNRR---GLRVYY-- 214
Query: 468 RTLCGPISKFKL---MLLYSSLLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLMY 523
+ + KF + LY+ ++ L K FD A+ V E+ G+V + TF L+
Sbjct: 215 --VYEKMKKFGFKPRVFLYNRIMDALVK-NGYFDLALAVYEDFKEDGLVEESTTFMILVK 271
Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSL 583
G + + ++ +R+N +PD + + +I+ +S NL DA+ + +
Sbjct: 272 GLCKAGRIEEMLEILQRMRENLCKPDVFAYTAMIKT---LVSEGNL--DASLR------V 320
Query: 584 WKEGRRKE 591
W E RR E
Sbjct: 321 WDEMRRDE 328
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 78/173 (45%), Gaps = 1/173 (0%)
Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
+M +G +L L+ + ++++ + + ++ I++ K G+ E +E +++ +
Sbjct: 234 IMDALVKNGYFDLALAVYEDFKEDGLVEESTTFMILVKGLCKAGRIEEMLEILQRMRENL 293
Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
P+ YT MI+ LV+ G LD++L V+ + IK Y LV G R +
Sbjct: 294 CKPDVFAYTAMIKTLVSEGNLDASLRVWDEMRRDEIKPDVMAYGTLVVGLCKDGRVERGY 353
Query: 263 SLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
L EM+ R + RV +E G ++ A +++ I ++ Y
Sbjct: 354 ELFMEMKGKQILIDREIYRVLIEGFVADGKVRSACNLWEDLVDSGYIADIGIY 406
Score = 41.2 bits (95), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 74/169 (43%), Gaps = 3/169 (1%)
Query: 137 SVNFMN-LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETF 195
SV+ N LM+ GD++ LS + E R+ + SY+I + + + G A
Sbjct: 506 SVSVYNILMEALYKMGDIQKSLSLFYEMRKLGFEPDSSSYSIAICCFVEKGDVKAACSFH 565
Query: 196 RQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA-LEVFSALPLMRIKRTSKQYLILVEGFVG 254
++I+ +P+ Y + + L +G++D+ L V L + +Y + V
Sbjct: 566 EKIIEMSCVPSIAAYLSLTKGLCQIGEIDAVMLLVRECLGNVESGPMEFKYALTVCHVCK 625
Query: 255 VERFDEAKSLLNEMRDDGKFPGRAMRVA-LERMQEMGFIQGANEFLREM 302
++ +++EM +G F + A + M + G I+ A E E+
Sbjct: 626 GSNAEKVMKVVDEMNQEGVFINEVIYCAIISGMSKHGTIKVAREVFTEL 674
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 80/177 (45%), Gaps = 11/177 (6%)
Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
G+ V+ +++ L ++G+ +L + + DG+ +T +++ + + +
Sbjct: 223 GFKPRVFLYNRIMDALVKNGYFDLALAVYEDFKEDGLVEESTTFMILVKGLCKAGRIEEM 282
Query: 461 LKAFHDDR-TLCGPISKFKLMLLYSSLLRTLTKCKRDFDA-INVLEEMIFSGIVPDVQTF 518
L+ R LC P + Y+++++TL + + DA + V +EM I PDV +
Sbjct: 283 LEILQRMRENLCKPD-----VFAYTAMIKTLVS-EGNLDASLRVWDEMRRDEIKPDVMAY 336
Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC---KYLSNSNLMPD 572
L+ G + +LF ++ + D +++VLI+ + K S NL D
Sbjct: 337 GTLVVGLCKDGRVERGYELFMEMKGKQILIDREIYRVLIEGFVADGKVRSACNLWED 393
Score = 36.6 bits (83), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 45/101 (44%)
Query: 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230
S + + I++ ++A + + ++ G P Y +++ LV G D AL V+
Sbjct: 192 SEKQFEILIRMHADNRRGLRVYYVYEKMKKFGFKPRVFLYNRIMDALVKNGYFDLALAVY 251
Query: 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
+ S ++ILV+G R +E +L MR++
Sbjct: 252 EDFKEDGLVEESTTFMILVKGLCKAGRIEEMLEILQRMREN 292
>sp|Q9SYK1|PPR11_ARATH Pentatricopeptide repeat-containing protein At1g05600
OS=Arabidopsis thaliana GN=At1g05600 PE=2 SV=1
Length = 504
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 113/511 (22%), Positives = 208/511 (40%), Gaps = 46/511 (9%)
Query: 65 RLLDPFIVTHALRSAPNADSALSIMEALKSN-PNFSHNQSTLHALATVLAKSQRNHELKT 123
R+L P +++ L+ N +AL + E K P++ HN S + +L KS R E+K
Sbjct: 8 RVLTPSLLSQILKKQKNPVTALKLFEEAKERFPSYGHNGSVYATMIDILGKSNRVLEMKY 67
Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
+I + F ++++ +S +G LE +S + + + + S++ ++
Sbjct: 68 VIERMKEDSCECKDSVFASVIRTFSRAGRLEDAISLFKSLHEFNCVNWSLSFDTLLQEMV 127
Query: 184 KTGKNFEAVETFRQVIDEGAIPNSR--TYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241
K + A FR+ G NSR ++++ L + + D A +VF +
Sbjct: 128 KESELEAACHIFRKYC-YGWEVNSRITALNLLMKVLCQVNRSDLASQVFQEMNYQGCYPD 186
Query: 242 SKQYLILVEGFVGVERFDEAKSLLNEM--RDDGKFPGRAM---RVALERMQEMGFIQGAN 296
Y IL++GF + +EA LL M R K G + R+ L+ + + G + A
Sbjct: 187 RDSYRILMKGFCLEGKLEEATHLLYSMFWRISQKGSGEDIVVYRILLDALCDAGEVDDAI 246
Query: 297 EFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEW 356
E L ++L R Y + + + V+ L P LD +
Sbjct: 247 EILGKILRKGLKAPKRCYHHIEAGHWESSSEGIERVKRLLTETLIRGAIP-----CLDSY 301
Query: 357 SPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTIL 416
S L + K V +VL +S ++P T +Y + + L
Sbjct: 302 SAMATDLFEEGKLVEGE----EVLLAMRSK----------GFEP--TPFIYGAK--VKAL 343
Query: 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK 476
R G ++ +I K G LP + ++ G+ +++A + + +S
Sbjct: 344 CRAGKLKEAVSVINKEMMQGHCLPTVGVYNVL-IKGLCDDGK-SMEAVGYLKKMSKQVSC 401
Query: 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG----DEK 532
Y +L+ L + + +A V+EEM+ P V+T YH ++G D +
Sbjct: 402 VANEETYQTLVDGLCRDGQFLEASQVMEEMLIKSHFPGVET-----YHMMIKGLCDMDRR 456
Query: 533 --IVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
V L MV Q+ V P++ ++K L ++ C
Sbjct: 457 YEAVMWLEEMVSQDMV-PESSVWKALAESVC 486
Score = 33.9 bits (76), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/213 (17%), Positives = 74/213 (34%), Gaps = 50/213 (23%)
Query: 395 WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS 454
W Q G D+ +L L G V+ ++ K+ G++ P
Sbjct: 215 WRISQKGSGEDIVVYRILLDALCDAGEVDDAIEILGKILRKGLKAP-------------- 260
Query: 455 KKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
K+ ++A H + S + + KR +L E + G +P
Sbjct: 261 KRCYHHIEAGH-----------------WESSSEGIERVKR------LLTETLIRGAIPC 297
Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------- 561
+ ++S + +G +++ +R G EP +++ ++A C
Sbjct: 298 LDSYSAMATDLFEEGKLVEGEEVLLAMRSKGFEPTPFIYGAKVKALCRAGKLKEAVSVIN 357
Query: 562 KYLSNSNLMPDAATKELLKKSLWKEGRRKEAAA 594
K + + +P +L K L +G+ EA
Sbjct: 358 KEMMQGHCLPTVGVYNVLIKGLCDDGKSMEAVG 390
>sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820,
mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2
SV=1
Length = 598
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/312 (20%), Positives = 126/312 (40%), Gaps = 51/312 (16%)
Query: 316 DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEW---SPEVVSLLADAKFVWT 372
DG D++ + DN+ ++ + + + +DE + ++L + K +
Sbjct: 100 DGCDEEVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLS 159
Query: 373 TRLVCKVL---RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLI 429
L+ +VL RH + P A+ FFCW A + G+ HD M++ILA+ E + ++
Sbjct: 160 HDLIVEVLERFRHARKP--AFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVL 217
Query: 430 AKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF------------HDDRTLCGPISKF 477
++ + G+ L T + + + +K+ A+ F L + +
Sbjct: 218 EEMGTKGL-LTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRA 276
Query: 478 KL------------------MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
KL M+ Y+ LL + + +A + +MI G+ PD+ +
Sbjct: 277 KLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHN 336
Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLS------------NS 567
++ + KLF +++ G P+ + ++I+ +CK S +S
Sbjct: 337 VMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDS 396
Query: 568 NLMPDAATKELL 579
L PDAA L
Sbjct: 397 GLQPDAAVYTCL 408
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 2/205 (0%)
Query: 71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
I A +A A+ I E +K F T++ L L +++ E + L D
Sbjct: 233 IAMKAFAAAKERKKAVGIFELMKKY-KFKIGVETINCLLDSLGRAKLGKEAQVLF-DKLK 290
Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
+F + + L+ + +L WN+ ++N+++ ++ K +
Sbjct: 291 ERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSD 350
Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
A++ F + +G PN R+YT+MI +++A+E F + ++ + Y L+
Sbjct: 351 AIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLIT 410
Query: 251 GFVGVERFDEAKSLLNEMRDDGKFP 275
GF ++ D LL EM++ G P
Sbjct: 411 GFGTQKKLDTVYELLKEMQEKGHPP 435
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 10/122 (8%)
Query: 455 KKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514
KK+DA +K FH ++ GP + Y+ ++R K AI ++M+ SG+ PD
Sbjct: 347 KKSDA-IKLFHVMKSK-GPCPNVRS---YTIMIRDFCKQSSMETAIEYFDDMVDSGLQPD 401
Query: 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAA 574
++ L+ F Q V +L +++ G PD + LI K ++N MP+
Sbjct: 402 AAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALI----KLMANQK-MPEHG 456
Query: 575 TK 576
T+
Sbjct: 457 TR 458
Score = 38.1 bits (87), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541
+Y+ L+ K+ +L+EM G PD +T++ L+ A Q + ++++ +
Sbjct: 404 VYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKM 463
Query: 542 RQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSL 583
QN +EP + F +++++Y +++ + M A E++KK +
Sbjct: 464 IQNEIEPSIHTFNMIMKSY--FVARNYEMGRAVWDEMIKKGI 503
Score = 37.4 bits (85), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
++ LLR++ K DAI + M G P+V++++ ++ F Q + + F
Sbjct: 337 VMLEGLLRSMKKS----DAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDD 392
Query: 541 VRQNGVEPDAYMFKVLIQAY 560
+ +G++PDA ++ LI +
Sbjct: 393 MVDSGLQPDAAVYTCLITGF 412
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 115/263 (43%), Gaps = 15/263 (5%)
Query: 66 LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
L+D F+ LR A D L M PN T ++L K R E ++
Sbjct: 339 LIDSFVKEGKLREA---DQLLKEMMQRGIAPN----TITYNSLIDGFCKENRLEEAIQMV 391
Query: 126 GDISSSKFLNVSVNFMN-LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK 184
D+ SK + + N L+ Y + ++ L + E R + +T +YN ++ + +
Sbjct: 392 -DLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQ 450
Query: 185 TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQ 244
+GK A + F++++ P+ +Y ++++ L + G+L+ ALE+F + +++
Sbjct: 451 SGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGI 510
Query: 245 YLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMRVALERMQEMGFIQGANEFLREML 303
Y+I++ G + D+A L + G K RA + + + + A+ R+M
Sbjct: 511 YMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMT 570
Query: 304 -----PDKRIKNVRYYEDGSDDD 321
PD+ N+ DDD
Sbjct: 571 EEGHAPDELTYNILIRAHLGDDD 593
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/391 (19%), Positives = 161/391 (41%), Gaps = 36/391 (9%)
Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
+Y V++V K+G+ A+E R++ + ++ Y+++I+ L G LD+A +F+ +
Sbjct: 230 TYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEM 289
Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA-MRVALERMQEMGFI 292
+ K Y L+ GF R+D+ LL +M P V ++ + G +
Sbjct: 290 EIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKL 349
Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
+ A++ L+EM+ N Y D EN R+ +Q+ + K
Sbjct: 350 READQLLKEMMQRGIAPNTITYNSLIDGFCKEN-------RLEEAIQMVDLMISKG---- 398
Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
P++++ F CK R + F ++ + G + +
Sbjct: 399 ---CDPDIMT------FNILINGYCKANR----IDDGLELFREMSLR-GVIANTVTYNTL 444
Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
+ + G +E+ +L ++ S +R + ++++D + + + AL+ F G
Sbjct: 445 VQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIF-------G 497
Query: 473 PISKFKLML---LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
I K K+ L +Y ++ + + DA ++ + G+ D + ++ ++ +
Sbjct: 498 KIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKD 557
Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560
LF + + G PD + +LI+A+
Sbjct: 558 SLSKADILFRKMTEEGHAPDELTYNILIRAH 588
Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 103/534 (19%), Positives = 206/534 (38%), Gaps = 69/534 (12%)
Query: 46 IRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPN-----ADSALSIMEALKSNPNFSH 100
+R+ +R SS + S + RLL+ + AL + PN + S S+ N S+
Sbjct: 2 VRMMIRRLSSQA-SRFVQPRLLETGTLRIALINCPNELLFCCERGFSTF----SDRNLSY 56
Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
L + A + L D+ S+ L ++F L + + ELVL+
Sbjct: 57 RDKLSSGLVGIKADDAVD-----LFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALC 111
Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
+ + S + +I+++ + + K A T +++ G P++ + ++ L
Sbjct: 112 KQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLE 171
Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM- 279
++ ALE+ + M K T LV G + +A L++ M + G P
Sbjct: 172 CRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTY 231
Query: 280 RVALERMQEMGFIQGANEFLREMLPDKRIK--NVRY-------YEDGSDDDEDENDDNNS 330
L M + G A E LR+M ++ IK V+Y +DGS D+
Sbjct: 232 GPVLNVMCKSGQTALAMELLRKM-EERNIKLDAVKYSIIIDGLCKDGSLDN--------- 281
Query: 331 GVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW 390
L ++ K + ++ + ++ +L+ +++ SP
Sbjct: 282 ------AFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISP---- 331
Query: 391 HFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF 450
+V ++ + G + D+L+ ++ G+ T +ID
Sbjct: 332 --------------NVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDG 377
Query: 451 YGISKKADAALKAFHDDRTL---CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMI 507
+ + + A++ D + C P ++ ++ L+ K R D + + EM
Sbjct: 378 FCKENRLEEAIQMV--DLMISKGCDPD-----IMTFNILINGYCKANRIDDGLELFREMS 430
Query: 508 FSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561
G++ + T++ L+ F G ++ +KLF + V PD +K+L+ C
Sbjct: 431 LRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLC 484
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 6/165 (3%)
Query: 399 QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458
+ G+ + +L ++ + G L L+ K+ ++L +IID D
Sbjct: 221 ETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLD 280
Query: 459 AALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517
A F++ I FK ++ Y++L+ R D +L +MI I P+V T
Sbjct: 281 NAFNLFNE-----MEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVT 335
Query: 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562
FS L+ F +G + +L + Q G+ P+ + LI +CK
Sbjct: 336 FSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCK 380
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 79/207 (38%), Gaps = 36/207 (17%)
Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
T + L K+ R + L ++S + +V + L+Q + SG LE+ + E
Sbjct: 405 TFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEM 464
Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
R SY I++ G+ +A+E F ++ + Y ++I + N K+
Sbjct: 465 VSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKV 524
Query: 224 DSALEVFSALPLMRIKRTSK-----------------------------------QYLIL 248
D A ++F +LPL +K ++ Y IL
Sbjct: 525 DDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNIL 584
Query: 249 VEGFVGVERFDEAKSLLNEMRDDGKFP 275
+ +G + A L+ EM+ G FP
Sbjct: 585 IRAHLGDDDATTAAELIEEMKSSG-FP 610
Score = 34.3 bits (77), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 12/123 (9%)
Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
DA+++ +MI S +P V F+ L A ++V L + G+ Y ++I
Sbjct: 71 DAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMI 130
Query: 558 QAYCK-------YLSNSNLM-----PDAATKELLKKSLWKEGRRKEAAAVEERCEKINDV 605
+C+ + + +M PD L L E R EA + +R ++
Sbjct: 131 NCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHK 190
Query: 606 PSL 608
P+L
Sbjct: 191 PTL 193
>sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670,
mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2
SV=1
Length = 562
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 113/271 (41%), Gaps = 19/271 (7%)
Query: 351 NTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSP-ETAWHFFCWVAYQPGYTHDVYAL 409
N D +VV L+ V T LV +VLR F + A+ FF W Q GY H +
Sbjct: 110 NKKDTSHEDVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWANSQTGYVHSGHTY 169
Query: 410 EKMLTILARHGHVELVDRLIAKLR--SDGMRLPFSTIRLIIDFYGISKKADAALKAFHDD 467
M+ +L + + +L+ L+ ++ + + T+ ++ S K + A+ AF +
Sbjct: 170 NAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYNKAVDAFLEM 229
Query: 468 RTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
G + M +SL+ L K A V ++ F I PD +TF+ L++ F
Sbjct: 230 EKSYGVKTDTIAM---NSLMDALVKENSIEHAHEVFLKL-FDTIKPDARTFNILIHGFCK 285
Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAAT 575
+ + +++ PD + ++AYCK + + P+ T
Sbjct: 286 ARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVT 345
Query: 576 KELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
++ SL K + EA V E+ ++ VP
Sbjct: 346 YTIVMHSLGKSKQVAEALGVYEKMKEDGCVP 376
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 77/168 (45%)
Query: 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163
T + L K+++ + + ++ + ++F V + + ++ Y GD V E
Sbjct: 275 TFNILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEM 334
Query: 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223
R+ + +Y IVM K+ + EA+ + ++ ++G +P+++ Y+ +I L G+
Sbjct: 335 RENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRF 394
Query: 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271
A E+F + ++R Y ++ + R + A LL M D+
Sbjct: 395 KDAAEIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDE 442
Score = 42.0 bits (97), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%)
Query: 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539
++ Y+ ++ +L K K+ +A+ V E+M G VPD + +S L++ + G K ++F
Sbjct: 343 VVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEIFE 402
Query: 540 MVRQNGVEPDAYMFKVLIQA 559
+ GV D ++ +I A
Sbjct: 403 DMTNQGVRRDVLVYNTMISA 422
Score = 40.8 bits (94), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 93/222 (41%), Gaps = 21/222 (9%)
Query: 94 SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLN-VSVNFMN-LMQWYSTSG 151
S + H+ T +A+ VL K + + L+ +++ ++ V+++ M+ +M+ + SG
Sbjct: 158 SQTGYVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSG 217
Query: 152 DLELVLSTWNEYRQRAKLLS-TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
+ + E + + + T + N +M K A E F ++ D P++RT+
Sbjct: 218 KYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFD-TIKPDARTF 276
Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
++I K D A + + + Y VE + F +L EMR+
Sbjct: 277 NILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRE 336
Query: 271 DGKFP------------GRAMRVA-----LERMQEMGFIQGA 295
+G P G++ +VA E+M+E G + A
Sbjct: 337 NGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDA 378
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 41/99 (41%)
Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
+Y + Y K G E ++ + G PN TYT+++ L ++ AL V+ +
Sbjct: 310 TYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKM 369
Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
+K Y L+ RF +A + +M + G
Sbjct: 370 KEDGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMTNQG 408
>sp|Q9LSQ2|PP239_ARATH Putative pentatricopeptide repeat-containing protein At3g16890,
mitochondrial OS=Arabidopsis thaliana GN=PPR40 PE=3 SV=1
Length = 659
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 93/222 (41%), Gaps = 24/222 (10%)
Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFY---GISKKA 457
G VY+ ++ L + +E + +++ G+ T + Y G KK
Sbjct: 420 GLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRGDVKKV 479
Query: 458 DAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516
L+ + FK ++ +S ++ L + K DA + +EM+ GI P+
Sbjct: 480 HGVLEKLL--------VHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEI 531
Query: 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------L 564
T++ L+ GD KLF+ +++NG+ PD Y + IQ++CK +
Sbjct: 532 TYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTM 591
Query: 565 SNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606
L PD T L K+L + GR EA + E+ VP
Sbjct: 592 LRIGLKPDNFTYSTLIKALSESGRESEAREMFSSIERHGCVP 633
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 100/476 (21%), Positives = 188/476 (39%), Gaps = 42/476 (8%)
Query: 150 SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRT 209
S L+L + + R +YNI++ K G EA+ +Q+ EG PN T
Sbjct: 193 SNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFT 252
Query: 210 YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER-FDEAKS---LL 265
YT++I+ + G++D AL+ L +MR+++ + + G+ R K+ L+
Sbjct: 253 YTILIDGFLIAGRVDEALK---QLEMMRVRKLNPNEATIRTFVHGIFRCLPPCKAFEVLV 309
Query: 266 NEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREM-----LPDKRIKNVRYYEDGSDD 320
M D L + + +FLR++ +PD N
Sbjct: 310 GFMEKDSNLQRVGYDAVLYCLSNNSMAKETGQFLRKIGERGYIPDSSTFNAAMSCLLKGH 369
Query: 321 DEDENDDNNSGVRIAYGVQLKPWLDP-----KALANT--LDEWSPEVVSLLADAKF--VW 371
D E G ++ GV KP + +AL N E + + D V+
Sbjct: 370 DLVETCRIFDGF-VSRGV--KPGFNGYLVLVQALLNAQRFSEGDRYLKQMGVDGLLSSVY 426
Query: 372 TTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAK 431
+ V L + E A F + + G + ++ L+ + G V+ V ++ K
Sbjct: 427 SYNAVIDCLCKARRIENAAMFLTEMQDR-GISPNLVTFNTFLSGYSVRGDVKKVHGVLEK 485
Query: 432 LRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLT 491
L G + T LII+ +K+ A F + L I ++ Y+ L+R+
Sbjct: 486 LLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKE--MLEWGIEPNEIT--YNILIRSCC 541
Query: 492 KCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAY 551
++ + +M +G+ PD+ ++ + F K ++L + + G++PD +
Sbjct: 542 STGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNF 601
Query: 552 MFKVLIQAYCK------------YLSNSNLMPDAATKELLKK-SLWKEGRRKEAAA 594
+ LI+A + + +PD+ TK L+++ L K G +E +
Sbjct: 602 TYSTLIKALSESGRESEAREMFSSIERHGCVPDSYTKRLVEELDLRKSGLSRETVS 657
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 11/192 (5%)
Query: 373 TRLVCKVLRHFKSPETAWHFFCWVA-YQPGYTHDVYALEKMLTILARHGHVELVDRLIAK 431
TR V VL++ +P + F+ WV+ + P Y D + L R G + L L+ +
Sbjct: 76 TRFVISVLQNQDNPLHSLRFYLWVSNFDPVYAKDQSLKSVLGNALFRKGPLLLSMELLKE 135
Query: 432 LRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL-CGPISKFKLMLLYSSLLRTL 490
+R G R+ + ++I +G A F L P ++ LY++++ L
Sbjct: 136 IRDSGYRISDELMCVLIGSWGRLGLAKYCNDVFAQISFLGMKPSTR-----LYNAVIDAL 190
Query: 491 TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG--DEKIVQKLFSMVRQNGVEP 548
K A ++M G PD T++ L++ +G DE I +L + Q G P
Sbjct: 191 VKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAI--RLVKQMEQEGNRP 248
Query: 549 DAYMFKVLIQAY 560
+ + + +LI +
Sbjct: 249 NVFTYTILIDGF 260
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/226 (18%), Positives = 93/226 (41%), Gaps = 18/226 (7%)
Query: 65 RLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTL---------------HALA 109
R+ D F V+ ++ P + L +++AL + FS L +A+
Sbjct: 376 RIFDGF-VSRGVK--PGFNGYLVLVQALLNAQRFSEGDRYLKQMGVDGLLSSVYSYNAVI 432
Query: 110 TVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKL 169
L K++R + ++ V F + YS GD++ V +
Sbjct: 433 DCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFK 492
Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
+++++++ + + +A + F+++++ G PN TY ++I + G D ++++
Sbjct: 493 PDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKL 552
Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
F+ + + Y ++ F + + +A+ LL M G P
Sbjct: 553 FAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKP 598
Score = 41.6 bits (96), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 51/125 (40%)
Query: 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY 210
G L L + E R +S E +++ + + G + F Q+ G P++R Y
Sbjct: 124 GPLLLSMELLKEIRDSGYRISDELMCVLIGSWGRLGLAKYCNDVFAQISFLGMKPSTRLY 183
Query: 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270
+I+ LV LD A F + K Y IL+ G DEA L+ +M
Sbjct: 184 NAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQ 243
Query: 271 DGKFP 275
+G P
Sbjct: 244 EGNRP 248
Score = 33.9 bits (76), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 1/125 (0%)
Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250
++E +++ D G + V+I LG +VF+ + + +K +++ Y +++
Sbjct: 129 SMELLKEIRDSGYRISDELMCVLIGSWGRLGLAKYCNDVFAQISFLGMKPSTRLYNAVID 188
Query: 251 GFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIK 309
V D A +MR DG P R + + + + G + A +++M +
Sbjct: 189 ALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNRP 248
Query: 310 NVRYY 314
NV Y
Sbjct: 249 NVFTY 253
Score = 33.5 bits (75), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 46/91 (50%)
Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
L++ ++GD + + + + ++ +YN + + K K +A E + ++ G
Sbjct: 536 LIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIG 595
Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
P++ TY+ +I+ L G+ A E+FS++
Sbjct: 596 LKPDNFTYSTLIKALSESGRESEAREMFSSI 626
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 111/263 (42%), Gaps = 26/263 (9%)
Query: 66 LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLI 125
L+D F + L A+ + +M + +PN T + L K+ R + L
Sbjct: 374 LIDGFCKENHL---DKANQMVDLMVSKGCDPNIR----TFNILINGYCKANRIDDGLELF 426
Query: 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185
+S + +V + L+Q + G L + + E R + +Y I++
Sbjct: 427 RKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDN 486
Query: 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245
G++ +A+E F ++ + Y ++I + N K+D A ++F +LPL +K K Y
Sbjct: 487 GESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTY 546
Query: 246 LILVEGFVGVERFDEAKSLLNEMRDDGKFP---------------GRAMRVA--LERMQE 288
I++ G EA+ L +M +DG P G A + +E ++
Sbjct: 547 NIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKR 606
Query: 289 MGFIQGAN--EFLREMLPDKRIK 309
GF A+ + + +ML D R+K
Sbjct: 607 CGFSVDASTIKMVIDMLSDGRLK 629
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 123/616 (19%), Positives = 246/616 (39%), Gaps = 75/616 (12%)
Query: 46 IRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPN-----ADSALSIMEALKSNPNFSH 100
++L +R SS +S + RLL+ + AL + PN + S S+ N S+
Sbjct: 2 VKLMIRRLSS-QVSKFVQPRLLETGTLRIALINCPNELSFCCERGFSAF----SDRNLSY 56
Query: 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160
+ L + A + L D+ S+ L ++F L + + +LVL+
Sbjct: 57 RERLRSGLVDIKADDAID-----LFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALC 111
Query: 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220
+ + + + +I+++ + + K A ++I G PN+ T++ +I L
Sbjct: 112 KQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLE 171
Query: 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM- 279
G++ ALE+ + M K LV G + EA L+++M + G P
Sbjct: 172 GRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTY 231
Query: 280 RVALERMQEMGFIQGANEFLREMLPDKRIK--NVRY-------YEDGSDDDEDE--NDDN 328
L M + G A E LR+M ++ IK V+Y + GS D+ N+
Sbjct: 232 GPVLNVMCKSGQTALAMELLRKM-EERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEME 290
Query: 329 NSGVR---IAYGVQLKP------WLDPKALANTL--DEWSPEVV--SLLADAKFVWTTRL 375
G+ I Y + + W D L + + +P VV S+L D+ FV +L
Sbjct: 291 MKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDS-FVKEGKL 349
Query: 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435
++ E G D ++ + H++ ++++ + S
Sbjct: 350 R-------EAEELHKEMI-----HRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSK 397
Query: 436 GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR 495
G T ++I+ Y + + D L+ F +L G ++ + Y++L++ + +
Sbjct: 398 GCDPNIRTFNILINGYCKANRIDDGLELFRK-MSLRGVVAD---TVTYNTLIQGFCELGK 453
Query: 496 DFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV 555
A + +EM+ + P++ T+ L+ G+ + ++F + ++ +E D ++ +
Sbjct: 454 LNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNI 513
Query: 556 LIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIN 603
+I C L + P T ++ L K+G EA + + E+
Sbjct: 514 IIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDG 573
Query: 604 DVP-----SLALRGHI 614
P ++ +R H+
Sbjct: 574 HAPDGWTYNILIRAHL 589
>sp|Q8GZA6|PP113_ARATH Pentatricopeptide repeat-containing protein At1g71210
OS=Arabidopsis thaliana GN=At1g71210 PE=2 SV=1
Length = 879
Score = 63.2 bits (152), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 122/282 (43%), Gaps = 28/282 (9%)
Query: 41 QLIDSIRLAVRSNSSNSLS-------SLLNDRLLDPFIVTHALRSAPNADSALSIMEALK 93
QLID I +R+ S++ S L RL + F++ + + L +
Sbjct: 78 QLIDRIFDILRAPSNDGDDRAFYLHLSNLRLRLTEKFVLDVLSHTRYDILCCLKFFDWAA 137
Query: 94 SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN----------L 143
P F H ++T HA+ +L R +L TL+ D FL+ SV F + L
Sbjct: 138 RQPGFHHTRATFHAIFKIL----RGAKLVTLMID-----FLDRSVGFESCRHSLRLCDAL 188
Query: 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203
+ Y+ +G ++ L + R R L + Y+++++ + K F++ + I
Sbjct: 189 VVGYAVAGRTDIALQHFGNMRFRGLDLDSFGYHVLLNALVEE-KCFDSFDVIFDQISVRG 247
Query: 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263
+ T++++++ GKLD A + AL ILV+ +F EA
Sbjct: 248 FVCAVTHSILVKKFCKQGKLDEAEDYLRALLPNDPAGCGSGLGILVDALCSKRKFQEATK 307
Query: 264 LLNEMRDDGKFP-GRAMRVALERMQEMGFIQGANEFLREMLP 304
LL+E++ G RA + + + + GF+ +FL+++ P
Sbjct: 308 LLDEIKLVGTVNMDRAYNIWIRALIKAGFLNNPADFLQKISP 349
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 166 RAKLLSTESYNIVM-SVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224
R + T + NI+M Y K K +A+ F + ++G R Y VMI L KLD
Sbjct: 631 RDGITPTVASNILMLQSYLKNEKIADALHFFHDLREQGK-TKKRLYQVMIVGLCKANKLD 689
Query: 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273
A+ + ++ + + Y + ++ E++DEA L+NE R G+
Sbjct: 690 DAMHFLEEMKGEGLQPSIECYEVNIQKLCNEEKYDEAVGLVNEFRKSGR 738
Score = 42.0 bits (97), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 83/203 (40%), Gaps = 13/203 (6%)
Query: 364 LADAKFVWTTRLVCKVLRHFK-SPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHV 422
L++ + T + V VL H + FF W A QPG+ H + IL
Sbjct: 103 LSNLRLRLTEKFVLDVLSHTRYDILCCLKFFDWAARQPGFHHTRATFHAIFKILR---GA 159
Query: 423 ELVDRLIAKL-RSDGMRLPFSTIRL---IIDFYGISKKADAALKAFHDDRTLCGPISKFK 478
+LV +I L RS G ++RL ++ Y ++ + D AL+ F + R + F
Sbjct: 160 KLVTLMIDFLDRSVGFESCRHSLRLCDALVVGYAVAGRTDIALQHFGNMRFRGLDLDSFG 219
Query: 479 LMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF 538
+L ++L+ KC FD I +++ G V V T S L+ F QG +
Sbjct: 220 YHVLLNALVE--EKCFDSFDVI--FDQISVRGFVCAV-THSILVKKFCKQGKLDEAEDYL 274
Query: 539 SMVRQNGVEPDAYMFKVLIQAYC 561
+ N +L+ A C
Sbjct: 275 RALLPNDPAGCGSGLGILVDALC 297
Score = 33.1 bits (74), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 9/123 (7%)
Query: 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212
L+ LS W ++YN+ + GK A + + +G P + +
Sbjct: 592 LKFQLSLWEH--------KVQAYNLFIEGAGFAGKPKLARLVYDMMDRDGITPTVASNIL 643
Query: 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
M++ + K+ AL F L + K + Y +++ G + D+A L EM+ +G
Sbjct: 644 MLQSYLKNEKIADALHFFHDLR-EQGKTKKRLYQVMIVGLCKANKLDDAMHFLEEMKGEG 702
Query: 273 KFP 275
P
Sbjct: 703 LQP 705
>sp|Q9C6S6|PPR67_ARATH Putative pentatricopeptide repeat-containing protein At1g31840
OS=Arabidopsis thaliana GN=At1g31840 PE=2 SV=2
Length = 840
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 7/179 (3%)
Query: 53 NSSNSLSSLLNDRLLDPFIVTH-----ALRSAPNADSALSIMEALKSNPNFSHNQSTLHA 107
++S ++L+ ++ +P IVT+ S D A I E LK P F N TL
Sbjct: 619 DASKFFNNLIEGKM-EPDIVTYNTMICGYCSLRRLDEAERIFELLKVTP-FGPNTVTLTI 676
Query: 108 LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA 167
L VL K+ + ++ +V + LM W+S S D+E + E +++
Sbjct: 677 LIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKG 736
Query: 168 KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226
S SY+I++ K G+ EA F Q ID +P+ Y ++I +G+L A
Sbjct: 737 ISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRLVEA 795
Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 99/487 (20%), Positives = 188/487 (38%), Gaps = 35/487 (7%)
Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
+ + L+ Y +G L + +++ + L ++ + VY K+G A +++
Sbjct: 322 IAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKR 381
Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
++ +G PN TYT++I+ L G++ A ++ + ++ + Y L++GF
Sbjct: 382 MLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGN 441
Query: 258 FDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED 316
+L +M G P + V ++ + + G + A F +ML NV +
Sbjct: 442 LRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNS 501
Query: 317 GSDDDEDEN--DDNNSGVRIA--YGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF--- 369
D N D+ R+ YG++ + ++ E E L F
Sbjct: 502 LIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMG 561
Query: 370 -----VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVEL 424
+ L+ +H K P F + + + D+ ++ +L + +E
Sbjct: 562 LEPDALAYCTLIDAFCKHMK-PTIGLQLF-DLMQRNKISADIAVCNVVIHLLFKCHRIED 619
Query: 425 VDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR-TLCGPISKFKLMLLY 483
+ L M T +I Y ++ D A + F + T GP + +
Sbjct: 620 ASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNT-----VTL 674
Query: 484 SSLLRTLTKCKRDFD-AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542
+ L+ L K D D AI + M G P+ T+ LM F+ D + KLF ++
Sbjct: 675 TILIHVLCK-NNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQ 733
Query: 543 QNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGRRK 590
+ G+ P + ++I CK ++ L+PD +L + K GR
Sbjct: 734 EKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRLV 793
Query: 591 EAAAVEE 597
EAA + E
Sbjct: 794 EAALLYE 800
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 98/230 (42%), Gaps = 12/230 (5%)
Query: 347 KALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHF---KSPETAWHFFCWVAYQPGYT 403
K L+ E + ++SL+ D C ++ F + A+ F V Q G
Sbjct: 260 KGLSVDQIEVASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLF-KVMEQRGIE 318
Query: 404 HDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKA 463
D+ A ++ + G + + +L ++ G++L ID Y K D A +
Sbjct: 319 PDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVY--VKSGDLATAS 376
Query: 464 FHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523
R LC IS ++ Y+ L++ L + R ++A + +++ G+ P + T+S L+
Sbjct: 377 VVYKRMLCQGISPN--VVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLID 434
Query: 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDA 573
F G+ + L+ + + G PD ++ VL+ LS LM A
Sbjct: 435 GFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDG----LSKQGLMLHA 480
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 92/477 (19%), Positives = 175/477 (36%), Gaps = 88/477 (18%)
Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
V F + + Y SGDL + + + +Y I++ + G+ +EA + Q
Sbjct: 357 VVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQ 416
Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR-----------IKRTSKQYL 246
++ G P+ TY+ +I+ G L S ++ + M + SKQ L
Sbjct: 417 ILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGL 476
Query: 247 IL------------------------VEGFVGVERFDEAKSLLNEMRDDGKFPGRA---- 278
+L ++G+ + RFDEA + M G P A
Sbjct: 477 MLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTT 536
Query: 279 -MRVALE------------RMQEMGFIQGA-------NEFLREMLPDKRIKNVRYYEDGS 318
MRV++ RM +MG A + F + M P ++ D
Sbjct: 537 VMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQ----LFDLM 592
Query: 319 DDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDE--WSPEVVSLLADAKFVWTTRLV 376
++ D V I + D N L E P++V+ ++
Sbjct: 593 QRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTY---------NTMI 643
Query: 377 CKV--LRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRS 434
C LR E + + P + L ++ +L ++ ++ R+ + +
Sbjct: 644 CGYCSLRRLDEAERIFELLKVTPFGP----NTVTLTILIHVLCKNNDMDGAIRMFSIMAE 699
Query: 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHD--DRTLCGPISKFKLMLLYSSLLRTLTK 492
G + T ++D++ S + + K F + ++ + I YS ++ L K
Sbjct: 700 KGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVS------YSIIIDGLCK 753
Query: 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549
R +A N+ + I + ++PDV ++ L+ + G L+ + +NGV+PD
Sbjct: 754 RGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRLVEAALLYEHMLRNGVKPD 810
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 21/154 (13%)
Query: 471 CGPISKFKLMLLYSSLLRTLTK---CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL 527
CGP ++ + +L+ K R FD V+E+ GI PD+ +S L+ +
Sbjct: 280 CGPAPN---VVTFCTLINGFCKRGEMDRAFDLFKVMEQ---RGIEPDLIAYSTLIDGYFK 333
Query: 528 QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSNLMPDAAT 575
G + KLFS GV+ D +F I Y K + + P+ T
Sbjct: 334 AGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVT 393
Query: 576 KELLKKSLWKEGRRKEAAAVEERCEKINDVPSLA 609
+L K L ++GR EA + + K PS+
Sbjct: 394 YTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIV 427
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 80/178 (44%), Gaps = 1/178 (0%)
Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
V + L++ + +E + + E QR + +T +YNI++ + G A E F++
Sbjct: 397 VTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKE 456
Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
++ +G PN TY +++ L GKL+ A+ VF L +++ T Y I++EG +
Sbjct: 457 MVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 516
Query: 258 FDEAKSLLNEMRDDGKFPG-RAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
++ L + G P A + G + A+ +EM D + N Y
Sbjct: 517 VEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCY 574
Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 89/492 (18%), Positives = 192/492 (39%), Gaps = 24/492 (4%)
Query: 83 DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN 142
D +S+ E ++ N HN T L + + ++G + + V +
Sbjct: 98 DVVISLGEQMQ-NLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSS 156
Query: 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202
L+ Y S + ++ ++ +T ++N ++ K EA+ +++ +G
Sbjct: 157 LLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKG 216
Query: 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262
P+ TY V++ L G D A + + + +++ Y +++G + D+A
Sbjct: 217 CQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDAL 276
Query: 263 SLLNEMRDDGKFPGRAMRVAL-ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDD 321
+L EM G P +L + G A+ L +M+ K +V + D
Sbjct: 277 NLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAF 336
Query: 322 EDENDDNNSGVRIAYGVQLKPWLDPK-----------ALANTLDEWSPEVVSLLADAKF- 369
E + Y +K +DP + + LDE +++ F
Sbjct: 337 VKEGKLVEA--EKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFP 394
Query: 370 -VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRL 428
V T + K +K E F ++ Q G + ++ L + G ++ +
Sbjct: 395 DVVTYNTLIKGFCKYKRVEEGMEVFREMS-QRGLVGNTVTYNILIQGLFQAGDCDMAQEI 453
Query: 429 IAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAF-HDDRTLCGPISKFKLMLLYSSLL 487
++ SDG+ T ++D + K + A+ F + R+ P + Y+ ++
Sbjct: 454 FKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPT-----IYTYNIMI 508
Query: 488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE 547
+ K + D ++ + G+ PDV ++ ++ F +G ++ LF ++++G
Sbjct: 509 EGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTL 568
Query: 548 PDAYMFKVLIQA 559
P++ + LI+A
Sbjct: 569 PNSGCYNTLIRA 580
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 74/142 (52%), Gaps = 14/142 (9%)
Query: 424 LVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL---M 480
L+DR++AK G + T ++++ G+ K+ D L AF+ L + + KL +
Sbjct: 208 LIDRMVAK----GCQPDLVTYGVVVN--GLCKRGDTDL-AFN----LLNKMEQGKLEPGV 256
Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
L+Y++++ L K K DA+N+ +EM GI P+V T+S L+ G +L S
Sbjct: 257 LIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSD 316
Query: 541 VRQNGVEPDAYMFKVLIQAYCK 562
+ + + PD + F LI A+ K
Sbjct: 317 MIERKINPDVFTFSALIDAFVK 338
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 82/207 (39%), Gaps = 16/207 (7%)
Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
G D+ ++ L + G +L L+ K+ + IID K D A
Sbjct: 216 GCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDA 275
Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
L F + T ++ YSSL+ L R DA +L +MI I PDV TFS
Sbjct: 276 LNLFKEMETK----GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSA 331
Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC------------KYLSNSN 568
L+ F +G +KL+ + + ++P + LI +C +++ + +
Sbjct: 332 LIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKH 391
Query: 569 LMPDAATKELLKKSLWKEGRRKEAAAV 595
PD T L K K R +E V
Sbjct: 392 CFPDVVTYNTLIKGFCKYKRVEEGMEV 418
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/487 (16%), Positives = 190/487 (39%), Gaps = 52/487 (10%)
Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
L G++ S+ + F L+ + ++V+S + + + +Y+I+++ +
Sbjct: 68 LFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFC 127
Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
+ + A+ +++ G PN T + ++ + ++ A+ + + + + +
Sbjct: 128 RRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTV 187
Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
+ L+ G + EA +L++ M G P V + + + G A L +M
Sbjct: 188 TFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKM 247
Query: 303 LPDKRIKNVRYYE---DGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPE 359
K V Y DG + +D + L ++ K + + +S
Sbjct: 248 EQGKLEPGVLIYNTIIDGLCKYKHMDD----------ALNLFKEMETKGIRPNVVTYSSL 297
Query: 360 VVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH 419
+ L ++ +RL+ ++ +P DV+ ++ +
Sbjct: 298 ISCLCNYGRWSDASRLLSDMIERKINP------------------DVFTFSALIDAFVKE 339
Query: 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK--F 477
G + ++L ++ + T +I+ + + + D A + F +SK F
Sbjct: 340 GKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFE------FMVSKHCF 393
Query: 478 KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL 537
++ Y++L++ K KR + + V EM G+V + T++ L+ GD + Q++
Sbjct: 394 PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEI 453
Query: 538 FSMVRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWK 585
F + +GV P+ + L+ CK YL S + P T ++ + + K
Sbjct: 454 FKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCK 513
Query: 586 EGRRKEA 592
G+ ++
Sbjct: 514 AGKVEDG 520
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/205 (19%), Positives = 83/205 (40%), Gaps = 16/205 (7%)
Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
G H+ Y ++ R + L ++ K+ G T+ +++ Y SK+ A
Sbjct: 111 GIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEA 170
Query: 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520
+ A D + G + +++L+ L + +A+ +++ M+ G PD+ T+
Sbjct: 171 V-ALVDQMFVTGYQPN---TVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGV 226
Query: 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSNSN 568
++ +GD + L + + Q +EP ++ +I CKY +
Sbjct: 227 VVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKG 286
Query: 569 LMPDAATKELLKKSLWKEGRRKEAA 593
+ P+ T L L GR +A+
Sbjct: 287 IRPNVVTYSSLISCLCNYGRWSDAS 311
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/204 (20%), Positives = 85/204 (41%), Gaps = 1/204 (0%)
Query: 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
+ L + D AL++ + +++ N T +L + L R + L+ D+
Sbjct: 262 IIDGLCKYKHMDDALNLFKEMETK-GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIER 320
Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
K F L+ + G L ++E +R+ S +Y+ +++ + + EA
Sbjct: 321 KINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEA 380
Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
+ F ++ + P+ TY +I+ +++ +EVF + + + Y IL++G
Sbjct: 381 KQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQG 440
Query: 252 FVGVERFDEAKSLLNEMRDDGKFP 275
D A+ + EM DG P
Sbjct: 441 LFQAGDCDMAQEIFKEMVSDGVPP 464
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/163 (19%), Positives = 68/163 (41%), Gaps = 1/163 (0%)
Query: 71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130
I+ L A + D A I + + S+ N T + L L K+ + + + +
Sbjct: 436 ILIQGLFQAGDCDMAQEIFKEMVSD-GVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQR 494
Query: 131 SKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190
SK + +++ +G +E + + +YN ++S + + G E
Sbjct: 495 SKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEE 554
Query: 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
A F+++ ++G +PNS Y +I + G +++ E+ +
Sbjct: 555 ADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEM 597
Score = 32.7 bits (73), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%)
Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
DA+ + EM+ S P + FS L+ A +V L ++ G+ + Y + +LI
Sbjct: 64 DAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILI 123
Query: 558 QAYCK 562
+C+
Sbjct: 124 NCFCR 128
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 93/218 (42%), Gaps = 10/218 (4%)
Query: 65 RLLDPFIVTHALRSAPNA-------DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR 117
R +DP I T++ S N D A + E + S F N T + L K++R
Sbjct: 359 RSIDPDIFTYS--SLINGFCMHDRLDEAKHMFELMISKDCFP-NVVTYNTLINGFCKAKR 415
Query: 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI 177
E L ++S + +V + L+ + + D + + + + +YN
Sbjct: 416 IDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNT 475
Query: 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237
++ K GK +A+ F + P TY +MIE + GK++ ++F +L L
Sbjct: 476 LLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 535
Query: 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
+K Y ++ GF +EA +L +MR+DG P
Sbjct: 536 VKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLP 573
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 83/204 (40%), Gaps = 1/204 (0%)
Query: 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS 131
V +L + D AL++ ++ N N T +L + L +R + L+ D+
Sbjct: 266 VIDSLCKYRHEDDALNLFTEME-NKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIER 324
Query: 132 KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191
K V F L+ + G L ++E +R+ +Y+ +++ + + EA
Sbjct: 325 KINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 384
Query: 192 VETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251
F +I + PN TY +I ++D +E+F + + + Y L+ G
Sbjct: 385 KHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHG 444
Query: 252 FVGVERFDEAKSLLNEMRDDGKFP 275
F D A+ + +M DG P
Sbjct: 445 FFQARDCDNAQMVFKQMVSDGVHP 468
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 84/484 (17%), Positives = 188/484 (38%), Gaps = 46/484 (9%)
Query: 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183
L G + S+ L F L+ + +LV+S + ++ + +YNI+++ +
Sbjct: 72 LFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFC 131
Query: 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243
+ + A+ +++ G P+ T + ++ + ++ A+ + + M + +
Sbjct: 132 RRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTI 191
Query: 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302
+ L+ G + EA +L++ M G P V + + + G I A L +M
Sbjct: 192 TFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM 251
Query: 303 LPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVS 362
K NV Y D ++++ + L ++ K + + +S +
Sbjct: 252 EAAKIEANVVIYSTVIDSLCKYRHEDDA-------LNLFTEMENKGVRPNVITYSSLISC 304
Query: 363 LLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHV 422
L ++ +RL+ ++ +P +V ++ + G +
Sbjct: 305 LCNYERWSDASRLLSDMIERKINP------------------NVVTFNALIDAFVKEGKL 346
Query: 423 ELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK--FKLM 480
++L ++ + T +I+ + + + D A F ISK F +
Sbjct: 347 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL------MISKDCFPNV 400
Query: 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540
+ Y++L+ K KR + + + EM G+V + T++ L++ F D Q +F
Sbjct: 401 VTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQ 460
Query: 541 VRQNGVEPDAYMFKVLIQAYCK------------YLSNSNLMPDAATKELLKKSLWKEGR 588
+ +GV P+ + L+ CK YL S + P T ++ + + K G+
Sbjct: 461 MVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 520
Query: 589 RKEA 592
++
Sbjct: 521 VEDG 524
Score = 40.8 bits (94), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 39/217 (17%), Positives = 88/217 (40%), Gaps = 25/217 (11%)
Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
G +H++Y ++ R + L L+ K+ G T+ +++ Y K+ A
Sbjct: 115 GISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDA 174
Query: 461 LKAFHDDRTLCG--PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518
+ A D G P + + +++L+ L + +A+ +++ M+ G P++ T+
Sbjct: 175 V-ALVDQMVEMGYRPDT-----ITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTY 228
Query: 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY------------LSN 566
++ +GD + L + + +E + ++ +I + CKY + N
Sbjct: 229 GVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMEN 288
Query: 567 SNLMPDAATKELLKKSL-----WKEGRRKEAAAVEER 598
+ P+ T L L W + R + +E +
Sbjct: 289 KGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERK 325
Score = 40.8 bits (94), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/179 (18%), Positives = 69/179 (38%)
Query: 97 NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156
SHN T + L + + L+G + + V +L+ Y +
Sbjct: 115 GISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDA 174
Query: 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216
++ ++ + T ++ ++ K EAV +++ G PN TY V++
Sbjct: 175 VALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG 234
Query: 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275
L G +D A + + + +I+ Y +++ D+A +L EM + G P
Sbjct: 235 LCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRP 293
>sp|Q9SV46|PP282_ARATH Pentatricopeptide repeat-containing protein At3g54980,
mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2
SV=1
Length = 851
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 100/425 (23%), Positives = 175/425 (41%), Gaps = 48/425 (11%)
Query: 174 SYNIVMSVYAKTG--KNFEAVET---FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALE 228
S N+V + TG KN + V F ++ EG PNS T++V+IE G+++ ALE
Sbjct: 336 SMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALE 395
Query: 229 VFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQE 288
+ + ++ + + +++G++ ++ +EA L +E + G L + +
Sbjct: 396 FYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGLANVFVCNTILSWLCK 455
Query: 289 MGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKA 348
G A E L +M NV Y + + N RI + L+ L P
Sbjct: 456 QGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQK--NMDLARIVFSNILEKGLKPNN 513
Query: 349 LANTLDEWSPEVVSLLADAKF-VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY 407
S+L D F + +V+ H S + V YQ
Sbjct: 514 YT----------YSILIDGCFRNHDEQNALEVVNHMTSSNIEVN---GVVYQ-------- 552
Query: 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRL--IIDFYGISKKADAALKAFH 465
++ L + G L+A + + RL S + IID + + D+A+ A+
Sbjct: 553 ---TIINGLCKVGQTSKARELLANMIEE-KRLCVSCMSYNSIIDGFFKEGEMDSAVAAYE 608
Query: 466 DDRTLCG-PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYH 524
+ +CG IS ++ Y+SL+ L K R A+ + +EM G+ D+ + L+
Sbjct: 609 E---MCGNGISPN--VITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDG 663
Query: 525 FALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLW 584
F + + + LFS + + G+ P ++ LI + NL A +L KK L
Sbjct: 664 FCKRSNMESASALFSELLEEGLNPSQPIYNSLISGF------RNLGNMVAALDLYKKML- 716
Query: 585 KEGRR 589
K+G R
Sbjct: 717 KDGLR 721
Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 90/197 (45%), Gaps = 11/197 (5%)
Query: 117 RNHELKTLIGDISSSKFLNVSVNFM-------NLMQWYSTSGDLELVLSTWNEYRQRAKL 169
RNH+ + + ++ N+ VN + L + TS EL+ + E R
Sbjct: 525 RNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRL---C 581
Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
+S SYN ++ + K G+ AV + ++ G PN TYT ++ L ++D ALE+
Sbjct: 582 VSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEM 641
Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQE 288
+ +K Y L++GF + A +L +E+ ++G P + + +L +
Sbjct: 642 RDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRN 701
Query: 289 MGFIQGANEFLREMLPD 305
+G + A + ++ML D
Sbjct: 702 LGNMVAALDLYKKMLKD 718
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 88/475 (18%), Positives = 182/475 (38%), Gaps = 40/475 (8%)
Query: 89 MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS 148
ME L P+ H +H + K Q++ E L + + NV V ++ W
Sbjct: 400 MEVLGLTPSVFH----VHTIIQGWLKGQKHEEALKLFDESFETGLANVFV-CNTILSWLC 454
Query: 149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE-AVETFRQVIDEGAIPNS 207
G + ++ R + SYN VM + + KN + A F ++++G PN+
Sbjct: 455 KQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQ-KNMDLARIVFSNILEKGLKPNN 513
Query: 208 RTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNE 267
TY+++I+ +ALEV + + I+ Y ++ G V + +A+ LL
Sbjct: 514 YTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLAN 573
Query: 268 MRDDGKFPGRAM--RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDEN 325
M ++ + M ++ + G + A EM + NV Y + N
Sbjct: 574 MIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNN 633
Query: 326 DDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKS 385
R+ ++++ + K + + + + + + L ++L +
Sbjct: 634 -------RMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLN 686
Query: 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR 445
P QP Y + + G++ L K+ DG+R T
Sbjct: 687 PS-----------QPIYNSLISGFRNL-------GNMVAALDLYKKMLKDGLRCDLGTYT 728
Query: 446 LIIDFYGISKKADAALKA-FHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLE 504
+ID G+ K + L + + + G + ++Y+ ++ L+K + + + E
Sbjct: 729 TLID--GLLKDGNLILASELYTEMQAVGLVPD---EIIYTVIVNGLSKKGQFVKVVKMFE 783
Query: 505 EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559
EM + + P+V ++ ++ +G+ +L + G+ PD F +L+
Sbjct: 784 EMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILVSG 838
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 98/500 (19%), Positives = 186/500 (37%), Gaps = 95/500 (19%)
Query: 137 SVNFMNLMQWYSTSGDLE----------------------LVLSTW--NEYRQRAKLLST 172
SV F L++W+ +G++E ++ W + + A L
Sbjct: 374 SVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFD 433
Query: 173 ESY----------NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT-VMIEHLVNLG 221
ES+ N ++S K GK EA E ++ G PN +Y VM+ H
Sbjct: 434 ESFETGLANVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGH-CRQK 492
Query: 222 KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGRAMR 280
+D A VFS + +K + Y IL++G A ++N M + G +
Sbjct: 493 NMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQ 552
Query: 281 VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQL 340
+ + ++G A E L M+ +KR+ + D + + +S V AY
Sbjct: 553 TIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAV-AAYEEMC 611
Query: 341 KPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQP 400
+ P + T SL+ +CK R ++ E
Sbjct: 612 GNGISPNVITYT---------SLMNG---------LCKNNRMDQALEMRDEM-----KNK 648
Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
G D+ A ++ + ++E L ++L +G+ P I ++
Sbjct: 649 GVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLN-PSQPIY------------NSL 695
Query: 461 LKAFHDDRTLCGPISKFKLML---------LYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511
+ F + + + +K ML Y++L+ L K A + EM G+
Sbjct: 696 ISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGL 755
Query: 512 VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--------- 562
VPD ++ ++ + +G V K+F +++N V P+ ++ +I + +
Sbjct: 756 VPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFR 815
Query: 563 ---YLSNSNLMPDAATKELL 579
+ + ++PD AT ++L
Sbjct: 816 LHDEMLDKGILPDGATFDIL 835
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 84/187 (44%), Gaps = 17/187 (9%)
Query: 418 RHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKF 477
++G +E K+ G+ + II + +K + ALK F D+ G + F
Sbjct: 386 KNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLF-DESFETGLANVF 444
Query: 478 KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL 537
+ +++L L K + +A +L +M GI P+V +++ +M Q + + + +
Sbjct: 445 ----VCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIV 500
Query: 538 FSMVRQNGVEPDAYMFKVLIQA------------YCKYLSNSNLMPDAATKELLKKSLWK 585
FS + + G++P+ Y + +LI ++++SN+ + + + L K
Sbjct: 501 FSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCK 560
Query: 586 EGRRKEA 592
G+ +A
Sbjct: 561 VGQTSKA 567
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 82/169 (48%), Gaps = 1/169 (0%)
Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
V + L+ Y + ++ + + E + + +T +YN ++ + ++GK A E F++
Sbjct: 386 VTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQE 445
Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
++ G P+ TY ++++ L + G+L+ ALE+F + R+ Y I++ G +
Sbjct: 446 MVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASK 505
Query: 258 FDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPD 305
D+A SL + D G P V + + + G + A+ R+M D
Sbjct: 506 VDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKED 554
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 83/201 (41%), Gaps = 18/201 (8%)
Query: 401 GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460
G+ D +L L + G+ L L K+ ++ ++ID D A
Sbjct: 205 GFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDA 264
Query: 461 LKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519
L F++ + K ++ YSSL+ L + D +L EMI I+PDV TFS
Sbjct: 265 LSLFNEME-----MKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFS 319
Query: 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK--YLSNSNLM------- 570
L+ F +G ++L++ + G+ PD + LI +CK L +N M
Sbjct: 320 ALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSK 379
Query: 571 ---PDAATKELLKKSLWKEGR 588
PD T +L S K R
Sbjct: 380 GCEPDIVTYSILINSYCKAKR 400
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 78/411 (18%), Positives = 163/411 (39%), Gaps = 39/411 (9%)
Query: 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233
+Y V++ K+G + A++ FR++ + + Y+++I+ L G D AL +F+ +
Sbjct: 212 TYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM 271
Query: 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVAL-ERMQEMGFI 292
+ IK Y L+ G ++D+ +L EM P AL + + G +
Sbjct: 272 EMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKL 331
Query: 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANT 352
A E EM+ + Y D EN + + Q+ + K
Sbjct: 332 LEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEAN-------QMFDLMVSKG---- 380
Query: 353 LDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKM 412
P++V+ + CK K + F ++ + G + +
Sbjct: 381 ---CEPDIVT------YSILINSYCKA----KRVDDGMRLFREISSK-GLIPNTITYNTL 426
Query: 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG 472
+ + G + L ++ S G+ T +++D + + + AL+ F
Sbjct: 427 VLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFE------- 479
Query: 473 PISKFKLML---LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529
+ K ++ L +Y+ ++ + + DA ++ + G+ PDV T++ ++ +G
Sbjct: 480 KMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKG 539
Query: 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLK 580
LF ++++G PD + + +LI+A +L S L+ E +K
Sbjct: 540 SLSEADMLFRKMKEDGCTPDDFTYNILIRA---HLGGSGLISSVELIEEMK 587
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 72/178 (40%), Gaps = 1/178 (0%)
Query: 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197
V F L+ + G L +NE R T +YN ++ + K EA + F
Sbjct: 316 VTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDL 375
Query: 198 VIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257
++ +G P+ TY+++I ++D + +F + + + Y LV GF +
Sbjct: 376 MVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGK 435
Query: 258 FDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314
+ AK L EM G P + L+ + + G + A E +M + + Y
Sbjct: 436 LNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIY 493
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 88/223 (39%), Gaps = 6/223 (2%)
Query: 55 SNSLSSLLNDRLLDPFIVTHAL-----RSAPNADSALSIMEALKSNPNFSHNQSTLHALA 109
+N + L+ + +P IVT+++ A D + + + S+ N T + L
Sbjct: 369 ANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREI-SSKGLIPNTITYNTLV 427
Query: 110 TVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKL 169
+S + + K L ++ S V + L+ +G+L L + + ++
Sbjct: 428 LGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMT 487
Query: 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229
L YNI++ K +A F + D+G P+ TY VMI L G L A +
Sbjct: 488 LGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADML 547
Query: 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272
F + Y IL+ +G + L+ EM+ G
Sbjct: 548 FRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCG 590
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 75/187 (40%), Gaps = 4/187 (2%)
Query: 89 MEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS 148
M +K P+ T+ L L R E LI + F V + ++
Sbjct: 166 MVEMKQRPDLV----TVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLC 221
Query: 149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSR 208
SG+ L L + + +R S Y+IV+ K G +A+ F ++ +G +
Sbjct: 222 KSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVV 281
Query: 209 TYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268
TY+ +I L N GK D ++ + I + L++ FV + EAK L NEM
Sbjct: 282 TYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEM 341
Query: 269 RDDGKFP 275
G P
Sbjct: 342 ITRGIAP 348
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 99/515 (19%), Positives = 199/515 (38%), Gaps = 101/515 (19%)
Query: 137 SVNFMNLMQWYSTSGDLELVLSTWN---EYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE 193
++ F L+ + G + ++ + E +QR L++ + +++ G+ EA+
Sbjct: 140 TITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVST---LINGLCLKGRVSEALV 196
Query: 194 TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253
++++ G P+ TY ++ L G AL++F + IK + QY I+++
Sbjct: 197 LIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLC 256
Query: 254 GVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIK-NVR 312
DG F AL EM EM K IK +V
Sbjct: 257 ----------------KDGSFDD-----ALSLFNEM-----------EM---KGIKADVV 281
Query: 313 YYED--GSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFV 370
Y G ++ + DD +R G + P D + +D + E K +
Sbjct: 282 TYSSLIGGLCNDGKWDDGAKMLREMIGRNIIP--DVVTFSALIDVFVKE-------GKLL 332
Query: 371 WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIA 430
L +++ +P+T + Y D + E L H ++ D +++
Sbjct: 333 EAKELYNEMITRGIAPDT-------ITYNS--LIDGFCKENCL-----HEANQMFDLMVS 378
Query: 431 KLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM---LLYSSLL 487
K G T ++I+ Y +K+ D ++ F + IS L+ + Y++L+
Sbjct: 379 K----GCEPDIVTYSILINSYCKAKRVDDGMRLFRE-------ISSKGLIPNTITYNTLV 427
Query: 488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE 547
+ + A + +EM+ G+ P V T+ L+ G+ ++F ++++ +
Sbjct: 428 LGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMT 487
Query: 548 PDAYMFKVLIQAYCKY------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595
++ ++I C LS+ + PD T ++ L K+G EA +
Sbjct: 488 LGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADML 547
Query: 596 -----EERCEKINDVPSLALRGHIWA---VSSADL 622
E+ C + ++ +R H+ +SS +L
Sbjct: 548 FRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVEL 582
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 12/124 (9%)
Query: 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557
DAI++ E MI S +P F+ L A +V + NG+E D Y ++I
Sbjct: 53 DAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMI 112
Query: 558 QAYC---KYLSNSNLM---------PDAATKELLKKSLWKEGRRKEAAAVEERCEKINDV 605
YC K L +++ PD T L EGR EA A+ +R ++
Sbjct: 113 NCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQR 172
Query: 606 PSLA 609
P L
Sbjct: 173 PDLV 176
Score = 33.1 bits (74), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 76/221 (34%), Gaps = 42/221 (19%)
Query: 397 AYQPGYTHDVYALEKMLTILARHGHVE----LVDRLIA-KLRSDGMRLPFSTIRLIIDFY 451
A++ GY D ++ G V LVDR++ K R D T+ +I+
Sbjct: 131 AWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPD-----LVTVSTLINGL 185
Query: 452 GISKKADAAL--------KAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVL 503
+ + AL F D GP+ L L K A+++
Sbjct: 186 CLKGRVSEALVLIDRMVEYGFQPDEVTYGPV------------LNRLCKSGNSALALDLF 233
Query: 504 EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC-- 561
+M I V +S ++ G LF+ + G++ D + LI C
Sbjct: 234 RKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCND 293
Query: 562 ----------KYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592
+ + N++PD T L KEG+ EA
Sbjct: 294 GKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEA 334
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 218,763,691
Number of Sequences: 539616
Number of extensions: 8748589
Number of successful extensions: 36542
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 140
Number of HSP's that attempted gapping in prelim test: 32112
Number of HSP's gapped (non-prelim): 3269
length of query: 638
length of database: 191,569,459
effective HSP length: 124
effective length of query: 514
effective length of database: 124,657,075
effective search space: 64073736550
effective search space used: 64073736550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)