Query 006615
Match_columns 638
No_of_seqs 504 out of 3362
Neff 10.9
Searched_HMMs 46136
Date Thu Mar 28 11:59:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.8E-67 3.8E-72 572.8 56.2 465 69-601 373-875 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 9E-67 2E-71 567.2 57.8 519 30-623 374-930 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 2.9E-63 6.2E-68 551.5 48.1 553 31-620 125-735 (857)
4 PLN03081 pentatricopeptide (PP 100.0 3.4E-62 7.3E-67 530.1 44.1 471 67-619 88-571 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 1.4E-61 3.1E-66 537.9 47.6 493 71-617 91-662 (857)
6 PLN03081 pentatricopeptide (PP 100.0 3.8E-59 8.3E-64 506.3 49.9 459 29-572 90-562 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.3E-24 7.1E-29 244.4 52.9 520 71-633 300-830 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.6E-23 3.5E-28 238.6 55.6 486 71-633 402-898 (899)
9 PRK11788 tetratricopeptide rep 99.9 2.3E-19 5E-24 183.0 33.3 302 144-551 42-354 (389)
10 PRK11788 tetratricopeptide rep 99.9 1.2E-18 2.5E-23 177.9 32.2 299 113-516 46-354 (389)
11 KOG4626 O-linked N-acetylgluco 99.9 3.9E-18 8.4E-23 165.4 32.8 461 69-631 51-522 (966)
12 PRK11447 cellulose synthase su 99.8 1.2E-15 2.6E-20 174.9 54.7 488 71-633 67-738 (1157)
13 PRK11447 cellulose synthase su 99.8 6E-16 1.3E-20 177.3 51.7 430 73-602 276-740 (1157)
14 KOG4626 O-linked N-acetylgluco 99.8 3.9E-16 8.5E-21 151.7 35.5 395 72-549 88-488 (966)
15 PRK15174 Vi polysaccharide exp 99.8 1E-15 2.2E-20 163.9 41.6 331 71-509 47-381 (656)
16 TIGR00990 3a0801s09 mitochondr 99.8 3.7E-15 8.1E-20 160.2 45.7 258 255-604 307-573 (615)
17 TIGR00990 3a0801s09 mitochondr 99.8 7.9E-15 1.7E-19 157.7 45.1 402 73-544 134-571 (615)
18 PRK15174 Vi polysaccharide exp 99.8 3.3E-15 7.1E-20 160.0 41.6 378 76-563 15-400 (656)
19 PRK10049 pgaA outer membrane p 99.8 1.8E-14 3.9E-19 157.7 47.2 223 72-304 21-265 (765)
20 KOG4422 Uncharacterized conser 99.8 4.1E-15 9E-20 138.6 34.5 347 170-629 205-584 (625)
21 KOG4422 Uncharacterized conser 99.8 2.8E-14 6E-19 133.2 38.5 412 74-545 123-591 (625)
22 PRK14574 hmsH outer membrane p 99.8 2E-13 4.3E-18 146.7 47.7 447 72-604 40-515 (822)
23 PRK09782 bacteriophage N4 rece 99.7 5.7E-13 1.2E-17 146.2 45.8 210 78-305 56-276 (987)
24 PRK09782 bacteriophage N4 rece 99.7 1.5E-12 3.3E-17 142.9 48.9 529 70-631 82-736 (987)
25 PRK10049 pgaA outer membrane p 99.7 5.4E-13 1.2E-17 146.3 43.9 417 101-608 14-462 (765)
26 PRK14574 hmsH outer membrane p 99.7 2.1E-12 4.5E-17 138.9 46.5 419 111-604 43-481 (822)
27 KOG2002 TPR-containing nuclear 99.6 5.3E-12 1.1E-16 130.0 38.2 206 369-604 529-747 (1018)
28 KOG2002 TPR-containing nuclear 99.6 3.2E-11 6.9E-16 124.4 40.4 490 66-605 270-801 (1018)
29 KOG2076 RNA polymerase III tra 99.5 1.1E-09 2.4E-14 112.5 41.9 446 74-604 147-657 (895)
30 PRK10747 putative protoheme IX 99.4 3.9E-10 8.5E-15 114.0 33.2 283 150-543 97-389 (398)
31 PRK10747 putative protoheme IX 99.4 6.9E-10 1.5E-14 112.2 33.9 283 78-468 96-388 (398)
32 PF13041 PPR_2: PPR repeat fam 99.4 2.8E-13 6.1E-18 91.4 6.3 50 170-219 1-50 (50)
33 KOG0495 HAT repeat protein [RN 99.4 1.7E-08 3.8E-13 100.0 41.7 426 111-617 415-856 (913)
34 KOG4318 Bicoid mRNA stability 99.4 3.4E-11 7.5E-16 122.7 22.1 90 438-534 201-290 (1088)
35 TIGR00540 hemY_coli hemY prote 99.4 9.9E-10 2.1E-14 111.8 32.7 294 148-543 95-398 (409)
36 PF13041 PPR_2: PPR repeat fam 99.4 5.2E-13 1.1E-17 90.1 5.8 50 513-562 1-50 (50)
37 TIGR00540 hemY_coli hemY prote 99.4 1.4E-09 3.1E-14 110.6 33.1 290 78-467 96-396 (409)
38 PF13429 TPR_15: Tetratricopep 99.4 3.7E-12 8.1E-17 122.9 12.6 127 411-543 115-242 (280)
39 PF13429 TPR_15: Tetratricopep 99.4 2.8E-12 6.1E-17 123.8 11.8 260 178-543 14-276 (280)
40 KOG4318 Bicoid mRNA stability 99.4 2.2E-09 4.8E-14 109.8 32.2 139 484-629 463-619 (1088)
41 COG3071 HemY Uncharacterized e 99.4 3.7E-09 7.9E-14 99.2 31.0 291 150-549 97-395 (400)
42 KOG1155 Anaphase-promoting com 99.4 6E-08 1.3E-12 92.6 38.3 436 70-603 82-554 (559)
43 KOG0495 HAT repeat protein [RN 99.3 2E-07 4.4E-12 92.7 42.8 474 72-623 412-896 (913)
44 KOG2076 RNA polymerase III tra 99.3 5.7E-08 1.2E-12 100.3 39.5 398 110-600 147-553 (895)
45 KOG1126 DNA-binding cell divis 99.3 1.2E-09 2.5E-14 109.0 25.4 125 413-545 496-621 (638)
46 KOG2003 TPR repeat-containing 99.3 7E-09 1.5E-13 98.2 28.5 426 72-543 207-688 (840)
47 KOG2003 TPR repeat-containing 99.3 3.1E-09 6.7E-14 100.6 26.0 396 74-542 245-720 (840)
48 KOG1126 DNA-binding cell divis 99.3 2.5E-09 5.4E-14 106.6 24.5 283 152-604 334-622 (638)
49 KOG1155 Anaphase-promoting com 99.2 2.6E-07 5.7E-12 88.4 35.5 213 75-302 173-390 (559)
50 COG2956 Predicted N-acetylgluc 99.2 5.1E-08 1.1E-12 88.8 29.1 291 186-604 49-349 (389)
51 COG2956 Predicted N-acetylgluc 99.2 6.8E-08 1.5E-12 88.1 27.6 286 150-544 48-347 (389)
52 KOG1915 Cell cycle control pro 99.2 5.7E-06 1.2E-10 79.6 43.5 404 75-544 116-536 (677)
53 KOG2047 mRNA splicing factor [ 99.2 7.2E-06 1.6E-10 81.9 43.3 473 73-619 109-701 (835)
54 COG3071 HemY Uncharacterized e 99.2 2.1E-07 4.6E-12 87.6 31.2 194 79-276 97-297 (400)
55 KOG0547 Translocase of outer m 99.2 1.4E-07 3E-12 90.8 30.3 210 382-602 338-566 (606)
56 KOG1915 Cell cycle control pro 99.2 1.7E-06 3.8E-11 83.0 37.5 436 79-618 86-546 (677)
57 TIGR02521 type_IV_pilW type IV 99.1 5.9E-08 1.3E-12 91.0 25.4 197 102-302 31-229 (234)
58 TIGR02521 type_IV_pilW type IV 99.1 8E-08 1.7E-12 90.1 24.8 196 70-270 35-231 (234)
59 PRK12370 invasion protein regu 99.1 8.7E-08 1.9E-12 101.5 27.3 266 170-545 254-536 (553)
60 PRK12370 invasion protein regu 99.1 8.1E-08 1.8E-12 101.7 26.2 144 153-302 320-467 (553)
61 KOG1173 Anaphase-promoting com 99.0 5.2E-06 1.1E-10 81.8 35.0 425 65-563 48-535 (611)
62 KOG1840 Kinesin light chain [C 99.0 3.4E-07 7.4E-12 92.5 28.0 247 207-542 199-477 (508)
63 KOG1840 Kinesin light chain [C 99.0 2.6E-07 5.7E-12 93.3 26.5 175 406-600 283-477 (508)
64 KOG1156 N-terminal acetyltrans 99.0 5.7E-05 1.2E-09 75.9 41.4 393 75-546 50-470 (700)
65 KOG0547 Translocase of outer m 99.0 3.5E-06 7.6E-11 81.4 30.5 79 74-157 123-203 (606)
66 KOG3785 Uncharacterized conser 99.0 1.7E-05 3.7E-10 73.5 33.3 441 73-604 29-492 (557)
67 KOG1129 TPR repeat-containing 98.9 1.6E-07 3.5E-12 85.6 19.4 151 141-296 227-378 (478)
68 KOG2376 Signal recognition par 98.9 3.2E-05 6.9E-10 76.8 36.4 446 72-563 18-505 (652)
69 PF12569 NARP1: NMDA receptor- 98.9 2.6E-06 5.7E-11 87.3 30.3 130 408-543 196-333 (517)
70 PF12569 NARP1: NMDA receptor- 98.9 3.4E-06 7.4E-11 86.5 28.9 139 443-602 196-334 (517)
71 PF12854 PPR_1: PPR repeat 98.9 3.7E-09 7.9E-14 63.8 4.5 32 202-233 2-33 (34)
72 KOG1129 TPR repeat-containing 98.8 2.9E-07 6.2E-12 84.0 17.6 224 72-302 229-455 (478)
73 KOG1173 Anaphase-promoting com 98.8 2.9E-06 6.4E-11 83.5 25.7 278 141-525 248-532 (611)
74 KOG1156 N-terminal acetyltrans 98.8 0.00015 3.1E-09 73.1 37.3 424 78-603 19-469 (700)
75 PF12854 PPR_1: PPR repeat 98.8 5E-09 1.1E-13 63.2 4.0 34 166-199 1-34 (34)
76 KOG3617 WD40 and TPR repeat-co 98.8 0.0001 2.3E-09 75.8 35.5 207 76-302 738-993 (1416)
77 PRK11189 lipoprotein NlpI; Pro 98.8 2.8E-06 6E-11 82.3 23.3 220 76-304 36-264 (296)
78 PRK11189 lipoprotein NlpI; Pro 98.8 3.3E-06 7.2E-11 81.7 23.6 211 384-604 40-267 (296)
79 KOG4162 Predicted calmodulin-b 98.7 0.00056 1.2E-08 70.5 39.7 175 129-304 315-506 (799)
80 KOG3785 Uncharacterized conser 98.7 0.00026 5.6E-09 66.0 33.0 399 72-554 63-498 (557)
81 cd05804 StaR_like StaR_like; a 98.7 0.00013 2.8E-09 73.4 34.4 60 485-544 269-336 (355)
82 KOG0985 Vesicle coat protein c 98.7 0.00014 3.1E-09 76.5 32.9 215 28-270 781-1012(1666)
83 cd05804 StaR_like StaR_like; a 98.6 0.00017 3.6E-09 72.6 32.6 198 71-271 11-215 (355)
84 KOG2053 Mitochondrial inherita 98.6 0.0013 2.9E-08 69.0 37.6 152 443-600 438-606 (932)
85 KOG0985 Vesicle coat protein c 98.6 0.00073 1.6E-08 71.5 35.1 202 69-299 987-1189(1666)
86 COG3063 PilF Tfp pilus assembl 98.6 5.2E-05 1.1E-09 66.5 22.9 160 140-302 38-199 (250)
87 KOG4340 Uncharacterized conser 98.6 0.00011 2.4E-09 66.7 25.7 320 105-466 13-335 (459)
88 KOG4162 Predicted calmodulin-b 98.6 0.00066 1.4E-08 70.0 33.3 426 72-544 329-783 (799)
89 KOG1174 Anaphase-promoting com 98.6 0.0009 1.9E-08 63.9 34.9 166 369-544 333-500 (564)
90 PRK04841 transcriptional regul 98.5 0.00049 1.1E-08 78.8 36.8 137 408-545 614-761 (903)
91 KOG2047 mRNA splicing factor [ 98.5 0.0016 3.4E-08 65.8 44.1 448 72-543 175-686 (835)
92 KOG3617 WD40 and TPR repeat-co 98.5 0.00026 5.7E-09 73.0 29.4 77 376-468 918-994 (1416)
93 PF04733 Coatomer_E: Coatomer 98.5 7.6E-06 1.6E-10 78.1 17.8 67 403-470 198-265 (290)
94 KOG3616 Selective LIM binding 98.5 5.7E-05 1.2E-09 76.7 23.8 135 377-538 713-847 (1636)
95 COG3063 PilF Tfp pilus assembl 98.5 0.00011 2.3E-09 64.6 21.5 194 105-302 38-233 (250)
96 PF04733 Coatomer_E: Coatomer 98.5 2.1E-05 4.5E-10 75.1 19.2 154 416-603 112-266 (290)
97 KOG3616 Selective LIM binding 98.4 0.0032 6.9E-08 64.5 35.5 409 68-598 617-1072(1636)
98 PRK04841 transcriptional regul 98.4 0.002 4.4E-08 73.7 38.2 209 376-603 537-761 (903)
99 KOG2376 Signal recognition par 98.4 0.0033 7.1E-08 63.1 33.4 176 107-302 17-201 (652)
100 KOG1125 TPR repeat-containing 98.3 9.5E-05 2.1E-09 73.5 20.6 228 217-506 295-524 (579)
101 KOG1174 Anaphase-promoting com 98.3 0.0013 2.7E-08 62.9 26.7 297 70-436 198-501 (564)
102 KOG1125 TPR repeat-containing 98.3 0.00014 3E-09 72.4 21.3 227 66-302 285-524 (579)
103 TIGR00756 PPR pentatricopeptid 98.3 1.4E-06 3E-11 53.6 4.3 33 174-206 2-34 (35)
104 KOG1128 Uncharacterized conser 98.2 5.4E-05 1.2E-09 77.2 16.6 139 418-563 497-636 (777)
105 TIGR00756 PPR pentatricopeptid 98.2 2.2E-06 4.8E-11 52.6 4.3 33 517-549 2-34 (35)
106 KOG0548 Molecular co-chaperone 98.2 0.0079 1.7E-07 59.8 30.1 104 75-182 11-114 (539)
107 PF13812 PPR_3: Pentatricopept 98.2 2.4E-06 5.2E-11 52.0 4.1 33 173-205 2-34 (34)
108 PF13812 PPR_3: Pentatricopept 98.1 3.8E-06 8.3E-11 51.1 4.1 32 482-513 3-34 (34)
109 TIGR03302 OM_YfiO outer membra 98.1 0.00044 9.6E-09 64.8 20.0 176 403-603 30-233 (235)
110 TIGR03302 OM_YfiO outer membra 98.1 0.00026 5.7E-09 66.4 18.3 183 101-303 32-230 (235)
111 KOG1070 rRNA processing protei 98.1 0.0011 2.5E-08 72.6 24.5 228 60-293 1449-1688(1710)
112 COG5010 TadD Flp pilus assembl 98.1 0.0007 1.5E-08 60.9 19.1 158 106-268 70-228 (257)
113 KOG1128 Uncharacterized conser 98.1 0.00028 6.1E-09 72.2 18.6 214 69-304 401-615 (777)
114 PLN02789 farnesyltranstransfer 98.1 0.0028 6E-08 61.6 24.9 223 74-303 45-300 (320)
115 PLN02789 farnesyltranstransfer 98.1 0.0036 7.8E-08 60.8 25.5 133 145-280 45-180 (320)
116 PF08579 RPM2: Mitochondrial r 98.1 6.4E-05 1.4E-09 58.0 10.4 78 142-219 30-116 (120)
117 KOG1070 rRNA processing protei 98.1 0.002 4.3E-08 70.8 25.2 204 134-440 1455-1668(1710)
118 KOG4340 Uncharacterized conser 98.0 0.0046 9.9E-08 56.6 22.7 291 175-540 13-335 (459)
119 PRK10370 formate-dependent nit 98.0 0.0009 2E-08 60.2 18.1 119 150-272 52-174 (198)
120 PRK14720 transcript cleavage f 98.0 0.0019 4E-08 70.2 23.1 137 443-604 118-254 (906)
121 COG5010 TadD Flp pilus assembl 98.0 0.0022 4.9E-08 57.8 19.6 159 141-302 70-228 (257)
122 PF10037 MRP-S27: Mitochondria 98.0 0.00013 2.8E-09 72.4 13.0 127 435-563 60-186 (429)
123 PRK14720 transcript cleavage f 98.0 0.0024 5.3E-08 69.3 23.6 166 101-303 30-196 (906)
124 PF01535 PPR: PPR repeat; Int 97.9 1.1E-05 2.5E-10 47.7 3.5 29 174-202 2-30 (31)
125 PRK10370 formate-dependent nit 97.9 0.0025 5.4E-08 57.4 19.5 157 72-245 22-181 (198)
126 PRK15179 Vi polysaccharide bio 97.9 0.0011 2.3E-08 71.2 19.8 131 135-269 84-215 (694)
127 PF01535 PPR: PPR repeat; Int 97.9 1.6E-05 3.4E-10 47.1 3.6 29 517-545 2-30 (31)
128 KOG0548 Molecular co-chaperone 97.9 0.034 7.3E-07 55.5 32.7 196 376-603 230-456 (539)
129 KOG1127 TPR repeat-containing 97.9 0.0062 1.3E-07 64.9 24.3 179 82-269 474-657 (1238)
130 PRK15359 type III secretion sy 97.9 0.00049 1.1E-08 58.4 13.7 94 140-235 27-120 (144)
131 PF08579 RPM2: Mitochondrial r 97.9 0.00031 6.6E-09 54.3 10.9 82 481-562 26-116 (120)
132 PF10037 MRP-S27: Mitochondria 97.9 0.00019 4.2E-09 71.2 12.4 121 100-220 64-186 (429)
133 PRK15179 Vi polysaccharide bio 97.9 0.0021 4.6E-08 69.0 21.2 148 98-249 82-229 (694)
134 KOG1127 TPR repeat-containing 97.9 0.0094 2E-07 63.6 24.8 161 138-303 493-657 (1238)
135 KOG1914 mRNA cleavage and poly 97.8 0.04 8.7E-07 55.0 34.2 151 386-543 347-500 (656)
136 KOG3081 Vesicle coat complex C 97.8 0.019 4.2E-07 52.0 22.9 120 415-543 146-270 (299)
137 PRK15359 type III secretion sy 97.8 0.0019 4.1E-08 54.9 15.9 109 158-272 14-122 (144)
138 KOG3081 Vesicle coat complex C 97.8 0.0073 1.6E-07 54.6 19.6 217 72-303 47-269 (299)
139 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.0013 2.7E-08 65.2 16.4 125 139-270 171-296 (395)
140 KOG0624 dsRNA-activated protei 97.8 0.037 8E-07 52.0 28.5 188 72-270 44-251 (504)
141 COG4783 Putative Zn-dependent 97.8 0.025 5.5E-07 55.8 24.6 82 219-302 318-400 (484)
142 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.0015 3.1E-08 64.8 16.6 123 176-303 173-295 (395)
143 PF06239 ECSIT: Evolutionarily 97.8 0.00033 7.2E-09 61.4 10.7 104 135-257 45-153 (228)
144 PF09976 TPR_21: Tetratricopep 97.7 0.0019 4.2E-08 55.0 15.1 125 140-268 15-144 (145)
145 TIGR02552 LcrH_SycD type III s 97.7 0.0021 4.5E-08 54.1 15.2 93 106-200 21-113 (135)
146 KOG3060 Uncharacterized conser 97.7 0.029 6.3E-07 50.5 22.1 190 79-273 25-222 (289)
147 COG4783 Putative Zn-dependent 97.7 0.011 2.4E-07 58.2 21.1 136 147-303 316-452 (484)
148 TIGR02552 LcrH_SycD type III s 97.7 0.0015 3.3E-08 55.0 13.6 102 444-553 20-121 (135)
149 KOG2053 Mitochondrial inherita 97.6 0.15 3.2E-06 54.3 38.8 220 77-304 20-254 (932)
150 KOG0624 dsRNA-activated protei 97.6 0.076 1.6E-06 50.0 27.4 158 382-549 167-339 (504)
151 KOG1914 mRNA cleavage and poly 97.5 0.13 2.9E-06 51.5 36.1 140 457-603 347-502 (656)
152 PF09976 TPR_21: Tetratricopep 97.4 0.0061 1.3E-07 51.9 14.4 125 104-232 14-143 (145)
153 PF06239 ECSIT: Evolutionarily 97.4 0.0028 6.1E-08 55.7 12.0 118 99-235 44-167 (228)
154 PF14938 SNAP: Soluble NSF att 97.3 0.15 3.2E-06 49.2 23.9 118 412-544 100-225 (282)
155 PF05843 Suf: Suppressor of fo 97.3 0.0056 1.2E-07 58.6 14.1 130 138-270 2-135 (280)
156 PF14938 SNAP: Soluble NSF att 97.3 0.084 1.8E-06 50.8 21.6 63 408-470 157-225 (282)
157 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.0095 2.1E-07 48.6 12.8 58 143-200 8-67 (119)
158 cd00189 TPR Tetratricopeptide 97.2 0.0054 1.2E-07 47.3 10.9 89 143-233 6-94 (100)
159 cd00189 TPR Tetratricopeptide 97.2 0.0053 1.1E-07 47.4 10.8 96 174-271 2-97 (100)
160 PF05843 Suf: Suppressor of fo 97.1 0.012 2.6E-07 56.4 14.2 129 104-235 3-135 (280)
161 PRK02603 photosystem I assembl 97.1 0.019 4.2E-07 50.5 14.3 88 405-497 34-123 (172)
162 PF12895 Apc3: Anaphase-promot 97.1 0.002 4.4E-08 48.8 6.8 79 186-267 3-83 (84)
163 TIGR02795 tol_pal_ybgF tol-pal 97.0 0.026 5.6E-07 46.0 13.7 98 104-201 4-105 (119)
164 PF12895 Apc3: Anaphase-promot 97.0 0.0033 7.2E-08 47.6 7.2 20 486-505 31-50 (84)
165 PRK15363 pathogenicity island 97.0 0.039 8.4E-07 46.4 13.7 92 142-235 40-131 (157)
166 CHL00033 ycf3 photosystem I as 97.0 0.014 3E-07 51.3 11.8 65 406-470 35-101 (168)
167 PRK02603 photosystem I assembl 96.9 0.06 1.3E-06 47.4 15.6 86 104-190 37-124 (172)
168 PLN03088 SGT1, suppressor of 96.9 0.028 6E-07 56.0 14.7 86 113-200 13-98 (356)
169 KOG2796 Uncharacterized conser 96.9 0.11 2.4E-06 47.0 16.5 97 104-200 179-280 (366)
170 PLN03088 SGT1, suppressor of 96.9 0.013 2.9E-07 58.2 12.4 89 415-509 11-99 (356)
171 KOG3060 Uncharacterized conser 96.9 0.22 4.7E-06 45.1 18.2 156 75-236 61-220 (289)
172 KOG2280 Vacuolar assembly/sort 96.9 0.75 1.6E-05 48.3 24.3 131 67-201 438-575 (829)
173 CHL00033 ycf3 photosystem I as 96.8 0.035 7.6E-07 48.7 13.1 62 105-166 38-101 (168)
174 KOG2041 WD40 repeat protein [G 96.8 0.55 1.2E-05 48.7 22.1 205 134-432 689-904 (1189)
175 PRK10153 DNA-binding transcrip 96.7 0.061 1.3E-06 56.1 16.3 142 436-607 332-487 (517)
176 PRK10153 DNA-binding transcrip 96.7 0.16 3.4E-06 53.1 19.2 158 131-293 331-502 (517)
177 PF14559 TPR_19: Tetratricopep 96.7 0.012 2.7E-07 42.3 7.8 51 184-235 3-53 (68)
178 PF14559 TPR_19: Tetratricopep 96.6 0.0099 2.1E-07 42.8 6.7 63 148-213 2-64 (68)
179 KOG0553 TPR repeat-containing 96.6 0.029 6.3E-07 51.9 10.9 100 416-523 91-190 (304)
180 KOG2041 WD40 repeat protein [G 96.5 1.3 2.8E-05 46.2 24.9 54 241-302 851-904 (1189)
181 PF04840 Vps16_C: Vps16, C-ter 96.5 0.89 1.9E-05 44.2 25.8 105 104-232 2-106 (319)
182 PF03704 BTAD: Bacterial trans 96.4 0.052 1.1E-06 46.3 11.4 71 481-552 63-138 (146)
183 PF13432 TPR_16: Tetratricopep 96.4 0.015 3.2E-07 41.4 6.6 56 144-200 4-59 (65)
184 PRK15363 pathogenicity island 96.4 0.077 1.7E-06 44.7 11.5 90 449-544 43-132 (157)
185 PF12688 TPR_5: Tetratrico pep 96.4 0.16 3.4E-06 41.2 12.9 93 413-507 8-102 (120)
186 PF12688 TPR_5: Tetratrico pep 96.4 0.3 6.4E-06 39.6 14.5 88 110-199 9-102 (120)
187 PF13432 TPR_16: Tetratricopep 96.4 0.016 3.5E-07 41.2 6.6 61 521-605 3-63 (65)
188 KOG3941 Intermediate in Toll s 96.3 0.063 1.4E-06 49.0 11.3 83 152-234 87-186 (406)
189 KOG1538 Uncharacterized conser 96.3 0.3 6.4E-06 50.1 16.6 55 406-469 747-801 (1081)
190 PF03704 BTAD: Bacterial trans 96.2 0.034 7.5E-07 47.4 9.0 70 140-210 65-139 (146)
191 PF13170 DUF4003: Protein of u 96.2 0.65 1.4E-05 44.6 18.3 139 153-293 78-233 (297)
192 PRK10866 outer membrane biogen 96.2 0.9 1.9E-05 42.4 18.9 56 75-130 41-97 (243)
193 PF12921 ATP13: Mitochondrial 96.2 0.053 1.2E-06 44.3 9.4 68 405-472 1-83 (126)
194 PF13424 TPR_12: Tetratricopep 96.1 0.026 5.6E-07 42.0 6.7 65 478-542 3-73 (78)
195 PF12921 ATP13: Mitochondrial 96.0 0.1 2.2E-06 42.7 10.3 46 170-215 50-96 (126)
196 COG5107 RNA14 Pre-mRNA 3'-end 96.0 1.9 4.2E-05 42.6 27.0 121 481-604 398-533 (660)
197 PF04840 Vps16_C: Vps16, C-ter 95.9 1.8 3.9E-05 42.1 23.9 52 244-299 179-231 (319)
198 KOG1538 Uncharacterized conser 95.9 2 4.3E-05 44.5 20.4 251 140-465 559-828 (1081)
199 PF13414 TPR_11: TPR repeat; P 95.9 0.046 9.9E-07 39.4 7.1 62 138-200 4-66 (69)
200 PF13424 TPR_12: Tetratricopep 95.8 0.045 9.8E-07 40.6 7.1 66 443-508 7-74 (78)
201 PF04053 Coatomer_WDAD: Coatom 95.8 0.11 2.4E-06 52.9 11.9 162 72-268 267-428 (443)
202 PF13414 TPR_11: TPR repeat; P 95.8 0.044 9.5E-07 39.5 6.8 60 482-542 5-65 (69)
203 COG4235 Cytochrome c biogenesi 95.8 0.74 1.6E-05 43.1 16.0 115 440-560 155-270 (287)
204 COG4700 Uncharacterized protei 95.8 1.1 2.4E-05 38.6 17.5 96 105-200 92-188 (251)
205 smart00299 CLH Clathrin heavy 95.7 1 2.2E-05 37.9 15.9 26 69-94 10-35 (140)
206 KOG0553 TPR repeat-containing 95.6 0.17 3.7E-06 47.0 11.1 96 113-212 92-187 (304)
207 PF07079 DUF1347: Protein of u 95.6 2.7 5.8E-05 41.8 37.5 188 406-598 298-520 (549)
208 PF13371 TPR_9: Tetratricopept 95.6 0.085 1.8E-06 38.4 7.8 56 145-201 3-58 (73)
209 PRK10866 outer membrane biogen 95.6 2 4.3E-05 40.1 19.4 178 105-302 35-238 (243)
210 PF13525 YfiO: Outer membrane 95.6 1.5 3.3E-05 39.7 17.4 55 76-130 15-70 (203)
211 PF13281 DUF4071: Domain of un 95.6 2.6 5.6E-05 41.6 19.6 167 104-272 143-335 (374)
212 PRK10803 tol-pal system protei 95.5 0.26 5.7E-06 46.4 12.3 100 408-509 145-246 (263)
213 PRK10803 tol-pal system protei 95.5 0.22 4.8E-06 46.9 11.7 22 249-270 224-245 (263)
214 PF13170 DUF4003: Protein of u 95.4 0.31 6.8E-06 46.7 12.6 130 422-554 78-221 (297)
215 KOG1130 Predicted G-alpha GTPa 95.3 0.24 5.2E-06 47.9 11.2 142 442-601 196-343 (639)
216 KOG1130 Predicted G-alpha GTPa 95.1 0.066 1.4E-06 51.6 7.0 136 409-544 198-344 (639)
217 PLN03098 LPA1 LOW PSII ACCUMUL 94.9 0.63 1.4E-05 46.5 13.3 66 134-201 72-141 (453)
218 COG4700 Uncharacterized protei 94.8 2.4 5.1E-05 36.7 18.1 131 403-538 86-216 (251)
219 KOG2796 Uncharacterized conser 94.8 3.2 6.8E-05 38.1 19.6 136 139-275 179-319 (366)
220 PF13371 TPR_9: Tetratricopept 94.8 0.12 2.7E-06 37.6 6.5 61 522-606 2-62 (73)
221 smart00299 CLH Clathrin heavy 94.8 1.2 2.7E-05 37.4 13.4 85 106-198 11-95 (140)
222 PLN03098 LPA1 LOW PSII ACCUMUL 94.6 0.17 3.7E-06 50.4 8.5 98 440-546 74-176 (453)
223 KOG3941 Intermediate in Toll s 94.5 0.36 7.7E-06 44.4 9.6 83 481-563 68-171 (406)
224 PF13281 DUF4071: Domain of un 94.4 5.3 0.00011 39.5 18.0 163 141-305 145-334 (374)
225 KOG0550 Molecular chaperone (D 94.3 5.8 0.00013 39.0 17.8 138 404-544 166-316 (486)
226 COG4235 Cytochrome c biogenesi 94.1 3.1 6.7E-05 39.1 15.1 114 134-251 153-269 (287)
227 PF07079 DUF1347: Protein of u 94.0 7.2 0.00016 38.9 26.7 25 244-268 300-324 (549)
228 PF10300 DUF3808: Protein of u 93.8 2.9 6.4E-05 43.4 16.2 177 85-269 176-374 (468)
229 COG3118 Thioredoxin domain-con 93.7 6.2 0.00013 37.1 17.3 151 145-299 142-295 (304)
230 KOG0550 Molecular chaperone (D 93.6 8.1 0.00018 38.0 21.3 159 376-545 175-351 (486)
231 PF09205 DUF1955: Domain of un 93.4 3.5 7.7E-05 33.4 12.7 66 481-547 87-152 (161)
232 PF13525 YfiO: Outer membrane 93.4 5.9 0.00013 35.9 19.3 180 106-296 9-198 (203)
233 COG5107 RNA14 Pre-mRNA 3'-end 93.3 9.4 0.0002 38.0 31.8 148 405-561 396-546 (660)
234 KOG2610 Uncharacterized conser 93.3 2.4 5.3E-05 40.2 12.8 154 112-268 113-273 (491)
235 KOG4555 TPR repeat-containing 93.3 1.4 3E-05 35.6 9.6 94 415-510 52-145 (175)
236 PRK15331 chaperone protein Sic 93.2 2 4.4E-05 36.6 11.2 87 147-235 47-133 (165)
237 PF04184 ST7: ST7 protein; In 92.7 11 0.00024 38.3 17.0 165 71-250 173-339 (539)
238 COG3118 Thioredoxin domain-con 92.5 9.5 0.00021 35.9 16.5 143 112-259 144-289 (304)
239 KOG0543 FKBP-type peptidyl-pro 92.5 3.7 8.1E-05 40.2 13.4 103 481-608 258-361 (397)
240 COG3629 DnrI DNA-binding trans 92.4 1.5 3.2E-05 41.3 10.3 76 139-215 155-235 (280)
241 COG4105 ComL DNA uptake lipopr 92.3 9.3 0.0002 35.2 17.8 54 77-130 45-99 (254)
242 PF10300 DUF3808: Protein of u 92.2 8.1 0.00017 40.2 16.6 179 120-305 175-376 (468)
243 PRK11906 transcriptional regul 91.9 10 0.00022 38.4 15.8 20 82-101 274-293 (458)
244 PF04053 Coatomer_WDAD: Coatom 91.8 2.6 5.6E-05 43.2 12.3 128 72-233 301-428 (443)
245 PF08631 SPO22: Meiosis protei 91.8 13 0.00027 35.7 22.9 61 243-303 85-148 (278)
246 COG4649 Uncharacterized protei 91.8 7.7 0.00017 33.3 14.8 138 68-205 60-200 (221)
247 KOG2610 Uncharacterized conser 91.6 4.7 0.0001 38.4 12.5 152 147-301 113-272 (491)
248 COG4649 Uncharacterized protei 91.6 8.1 0.00017 33.2 14.5 139 136-279 58-204 (221)
249 PF13512 TPR_18: Tetratricopep 91.4 2 4.4E-05 35.7 9.0 58 416-473 20-79 (142)
250 PF10602 RPN7: 26S proteasome 91.1 4.9 0.00011 35.3 11.8 63 138-200 37-101 (177)
251 COG1729 Uncharacterized protei 91.0 3.1 6.7E-05 38.6 10.7 96 139-235 144-243 (262)
252 PF07035 Mic1: Colon cancer-as 91.0 9.5 0.00021 32.9 13.2 131 158-301 15-145 (167)
253 COG1729 Uncharacterized protei 90.7 3.1 6.8E-05 38.6 10.4 100 407-509 143-244 (262)
254 COG3898 Uncharacterized membra 90.7 18 0.00038 35.5 26.8 128 411-548 268-396 (531)
255 PRK15331 chaperone protein Sic 90.5 2 4.4E-05 36.6 8.4 82 220-302 50-131 (165)
256 KOG4555 TPR repeat-containing 90.4 6.9 0.00015 31.7 10.6 91 75-167 52-145 (175)
257 KOG4570 Uncharacterized conser 90.3 2.5 5.5E-05 39.7 9.4 108 435-545 58-165 (418)
258 PF13428 TPR_14: Tetratricopep 90.3 1.2 2.5E-05 28.5 5.4 27 140-166 4-30 (44)
259 KOG2280 Vacuolar assembly/sort 90.2 29 0.00064 37.1 28.3 111 405-538 683-793 (829)
260 PF00637 Clathrin: Region in C 90.0 0.01 2.3E-07 50.4 -5.8 48 113-160 18-65 (143)
261 PF08631 SPO22: Meiosis protei 89.8 19 0.00042 34.5 22.3 222 77-302 4-272 (278)
262 KOG0543 FKBP-type peptidyl-pro 89.8 4.8 0.0001 39.5 11.2 94 208-304 258-354 (397)
263 PF10602 RPN7: 26S proteasome 89.6 4.5 9.7E-05 35.6 10.3 97 173-269 37-140 (177)
264 PF13428 TPR_14: Tetratricopep 89.5 0.65 1.4E-05 29.7 3.8 33 574-606 2-34 (44)
265 PF13176 TPR_7: Tetratricopept 89.4 0.75 1.6E-05 27.8 3.8 28 575-602 1-28 (36)
266 PF09205 DUF1955: Domain of un 89.2 11 0.00023 30.8 13.8 64 209-273 88-151 (161)
267 KOG2114 Vacuolar assembly/sort 89.1 38 0.00083 36.9 23.1 121 67-198 335-457 (933)
268 COG0457 NrfG FOG: TPR repeat [ 88.8 18 0.00039 32.8 25.4 223 79-303 36-263 (291)
269 COG4105 ComL DNA uptake lipopr 88.7 20 0.00043 33.2 18.2 64 520-604 172-235 (254)
270 COG3629 DnrI DNA-binding trans 88.5 3.7 7.9E-05 38.7 9.3 78 481-559 154-236 (280)
271 KOG4570 Uncharacterized conser 88.4 4.7 0.0001 38.0 9.6 92 73-166 71-164 (418)
272 cd00923 Cyt_c_Oxidase_Va Cytoc 88.3 5 0.00011 30.5 8.0 75 495-570 22-96 (103)
273 PRK11906 transcriptional regul 88.2 20 0.00044 36.3 14.6 147 385-540 273-432 (458)
274 COG3898 Uncharacterized membra 88.0 29 0.00062 34.2 30.4 209 82-305 69-292 (531)
275 KOG1585 Protein required for f 87.8 22 0.00047 32.6 14.0 201 72-300 37-251 (308)
276 PF13176 TPR_7: Tetratricopept 87.5 1.3 2.9E-05 26.7 4.0 24 175-198 2-25 (36)
277 KOG1941 Acetylcholine receptor 87.5 22 0.00047 34.5 13.5 91 212-302 127-232 (518)
278 KOG1920 IkappaB kinase complex 87.0 62 0.0013 36.9 20.3 95 186-303 894-992 (1265)
279 KOG0276 Vesicle coat complex C 86.9 10 0.00022 39.3 11.7 132 104-268 616-747 (794)
280 KOG1920 IkappaB kinase complex 86.8 21 0.00046 40.3 14.9 134 143-303 914-1053(1265)
281 PF02284 COX5A: Cytochrome c o 86.4 4.7 0.0001 31.0 7.0 60 120-180 28-87 (108)
282 PF13512 TPR_18: Tetratricopep 86.2 15 0.00033 30.6 10.6 76 75-150 19-95 (142)
283 cd00923 Cyt_c_Oxidase_Va Cytoc 86.1 6 0.00013 30.1 7.3 61 119-180 24-84 (103)
284 KOG0276 Vesicle coat complex C 85.2 11 0.00024 39.0 11.1 130 71-234 619-748 (794)
285 PF13929 mRNA_stabil: mRNA sta 85.1 32 0.0007 32.5 13.3 140 78-217 140-288 (292)
286 PF09613 HrpB1_HrpK: Bacterial 85.0 23 0.0005 30.2 12.7 52 453-509 22-73 (160)
287 PF00515 TPR_1: Tetratricopept 85.0 2.5 5.3E-05 24.9 4.3 31 574-604 2-32 (34)
288 PF02284 COX5A: Cytochrome c o 84.9 5.7 0.00012 30.6 6.8 71 498-569 28-98 (108)
289 PF07719 TPR_2: Tetratricopept 84.2 2.8 6E-05 24.6 4.3 31 574-604 2-32 (34)
290 PF10345 Cohesin_load: Cohesin 83.6 72 0.0016 34.7 40.8 160 72-233 65-251 (608)
291 PF13374 TPR_10: Tetratricopep 83.4 2.6 5.7E-05 26.1 4.1 32 573-604 2-33 (42)
292 KOG1550 Extracellular protein 82.1 54 0.0012 35.1 15.6 17 114-130 261-277 (552)
293 KOG1585 Protein required for f 82.0 42 0.00091 30.8 17.1 117 175-301 34-155 (308)
294 COG0457 NrfG FOG: TPR repeat [ 81.1 41 0.0009 30.3 23.2 200 71-273 64-267 (291)
295 COG5159 RPN6 26S proteasome re 80.5 27 0.00059 32.7 10.7 18 521-538 131-148 (421)
296 PF13762 MNE1: Mitochondrial s 80.0 35 0.00075 28.7 11.0 81 140-220 42-128 (145)
297 PF07035 Mic1: Colon cancer-as 79.9 39 0.00085 29.2 16.1 130 125-268 17-146 (167)
298 PF13431 TPR_17: Tetratricopep 79.8 1.7 3.7E-05 25.9 2.1 25 476-500 9-33 (34)
299 KOG2114 Vacuolar assembly/sort 79.6 1E+02 0.0022 33.8 27.2 36 572-607 735-774 (933)
300 PF00515 TPR_1: Tetratricopept 79.5 4.7 0.0001 23.7 4.1 26 175-200 4-29 (34)
301 PF13431 TPR_17: Tetratricopep 79.3 2.6 5.7E-05 25.1 2.8 20 172-191 13-32 (34)
302 PF13929 mRNA_stabil: mRNA sta 79.0 60 0.0013 30.8 16.2 136 149-284 140-285 (292)
303 PF04184 ST7: ST7 protein; In 78.9 83 0.0018 32.4 18.3 75 411-488 264-339 (539)
304 KOG4234 TPR repeat-containing 78.7 21 0.00046 31.5 9.0 93 450-544 104-197 (271)
305 PF13374 TPR_10: Tetratricopep 78.4 5.3 0.00011 24.7 4.3 28 173-200 3-30 (42)
306 TIGR02561 HrpB1_HrpK type III 78.4 39 0.00085 28.4 10.4 51 454-509 23-73 (153)
307 COG4455 ImpE Protein of avirul 78.0 18 0.00039 32.4 8.5 76 140-216 4-81 (273)
308 PF00637 Clathrin: Region in C 77.9 0.97 2.1E-05 38.2 0.9 84 178-268 13-96 (143)
309 PF13762 MNE1: Mitochondrial s 77.8 41 0.00089 28.2 10.9 82 481-562 40-127 (145)
310 PF13181 TPR_8: Tetratricopept 76.2 6.1 0.00013 23.1 3.9 31 574-604 2-32 (34)
311 PF11207 DUF2989: Protein of u 75.6 30 0.00066 30.8 9.3 78 148-227 118-198 (203)
312 PF07719 TPR_2: Tetratricopept 75.1 7.3 0.00016 22.7 4.1 23 177-199 6-28 (34)
313 KOG1941 Acetylcholine receptor 74.6 90 0.0019 30.6 14.1 131 410-540 126-271 (518)
314 KOG1550 Extracellular protein 74.3 1.3E+02 0.0028 32.3 16.1 179 118-302 228-423 (552)
315 PF11838 ERAP1_C: ERAP1-like C 73.9 93 0.002 30.4 19.2 120 177-301 134-262 (324)
316 PF02259 FAT: FAT domain; Int 73.7 98 0.0021 30.6 16.7 54 72-130 4-57 (352)
317 PF07721 TPR_4: Tetratricopept 73.1 4.6 0.0001 22.2 2.5 23 575-597 3-25 (26)
318 PF06552 TOM20_plant: Plant sp 73.1 64 0.0014 28.2 11.2 42 497-546 97-138 (186)
319 PF13174 TPR_6: Tetratricopept 73.1 8.9 0.00019 22.0 4.1 28 577-604 4-31 (33)
320 PF11207 DUF2989: Protein of u 72.7 71 0.0015 28.5 13.2 72 119-191 123-197 (203)
321 KOG0292 Vesicle coat complex C 68.7 2E+02 0.0043 32.0 19.3 157 107-304 625-781 (1202)
322 PF02259 FAT: FAT domain; Int 68.1 1.3E+02 0.0028 29.8 13.7 28 574-601 147-174 (352)
323 COG3947 Response regulator con 67.7 33 0.00072 32.3 8.0 72 174-246 281-357 (361)
324 PF09613 HrpB1_HrpK: Bacterial 65.6 87 0.0019 26.8 14.1 51 149-201 22-73 (160)
325 TIGR03504 FimV_Cterm FimV C-te 63.7 15 0.00033 23.5 3.7 22 522-543 6-27 (44)
326 PF14853 Fis1_TPR_C: Fis1 C-te 62.9 39 0.00084 22.7 5.7 20 489-508 10-29 (53)
327 COG1747 Uncharacterized N-term 62.8 1.9E+02 0.0042 29.9 22.2 91 173-268 67-157 (711)
328 TIGR03504 FimV_Cterm FimV C-te 62.3 16 0.00034 23.4 3.6 25 143-167 5-29 (44)
329 cd08819 CARD_MDA5_2 Caspase ac 61.7 50 0.0011 24.8 6.5 64 122-191 22-85 (88)
330 PF11663 Toxin_YhaV: Toxin wit 61.4 9.2 0.0002 31.2 3.0 34 490-525 105-138 (140)
331 PF10579 Rapsyn_N: Rapsyn N-te 60.4 22 0.00047 26.1 4.4 44 418-461 18-63 (80)
332 PF07163 Pex26: Pex26 protein; 59.9 99 0.0021 29.2 9.5 85 179-265 90-181 (309)
333 PF10366 Vps39_1: Vacuolar sor 59.6 87 0.0019 24.8 8.9 27 482-508 41-67 (108)
334 PF11848 DUF3368: Domain of un 59.5 31 0.00067 22.5 4.7 33 491-523 13-45 (48)
335 PF11848 DUF3368: Domain of un 59.2 38 0.00083 22.1 5.1 37 413-449 9-45 (48)
336 PF13181 TPR_8: Tetratricopept 59.2 27 0.00058 20.2 4.2 27 482-508 3-29 (34)
337 TIGR01503 MthylAspMut_E methyl 59.1 48 0.001 33.6 8.0 147 420-582 68-235 (480)
338 PF07163 Pex26: Pex26 protein; 58.7 1.3E+02 0.0027 28.5 10.0 17 73-89 90-106 (309)
339 KOG4077 Cytochrome c oxidase, 57.3 74 0.0016 25.8 7.2 59 120-179 67-125 (149)
340 KOG1586 Protein required for f 57.2 1.6E+02 0.0035 27.1 10.6 29 250-278 162-190 (288)
341 KOG4077 Cytochrome c oxidase, 56.4 1.1E+02 0.0024 24.9 8.1 70 499-569 68-137 (149)
342 PF13934 ELYS: Nuclear pore co 56.3 1.3E+02 0.0029 27.6 10.2 101 71-183 81-183 (226)
343 TIGR02508 type_III_yscG type I 56.0 95 0.0021 24.1 7.5 49 147-201 49-97 (115)
344 KOG1586 Protein required for f 55.4 1.7E+02 0.0037 26.9 12.7 26 579-604 160-185 (288)
345 KOG2297 Predicted translation 55.3 2E+02 0.0043 27.6 11.5 14 282-295 327-340 (412)
346 PRK11619 lytic murein transgly 55.2 3.2E+02 0.0069 30.0 30.8 222 72-304 135-374 (644)
347 cd00280 TRFH Telomeric Repeat 55.2 69 0.0015 28.0 7.3 43 485-530 116-158 (200)
348 smart00028 TPR Tetratricopepti 55.2 20 0.00043 19.6 3.2 29 575-603 3-31 (34)
349 PF08424 NRDE-2: NRDE-2, neces 54.9 2.2E+02 0.0047 28.0 13.5 29 581-609 162-190 (321)
350 PF04090 RNA_pol_I_TF: RNA pol 54.3 1.6E+02 0.0035 26.3 11.3 131 481-617 42-183 (199)
351 PF06552 TOM20_plant: Plant sp 54.0 94 0.002 27.2 7.9 79 481-563 29-126 (186)
352 PF14689 SPOB_a: Sensor_kinase 53.4 35 0.00077 23.7 4.5 29 514-542 22-50 (62)
353 PRK10564 maltose regulon perip 53.0 25 0.00053 33.5 4.7 36 518-553 260-295 (303)
354 COG5159 RPN6 26S proteasome re 52.2 96 0.0021 29.3 8.1 24 577-600 129-152 (421)
355 cd00280 TRFH Telomeric Repeat 52.2 1.7E+02 0.0036 25.8 11.0 63 153-218 85-154 (200)
356 PF10579 Rapsyn_N: Rapsyn N-te 50.9 55 0.0012 24.1 5.2 46 454-501 19-64 (80)
357 TIGR02561 HrpB1_HrpK type III 50.4 1.6E+02 0.0034 25.0 12.8 19 183-201 55-73 (153)
358 COG2976 Uncharacterized protei 50.4 1.9E+02 0.004 25.8 15.9 127 139-272 56-189 (207)
359 PHA02875 ankyrin repeat protei 49.9 2.2E+02 0.0047 29.1 11.8 207 74-300 7-223 (413)
360 COG3947 Response regulator con 49.0 2.5E+02 0.0054 26.9 16.8 157 119-279 150-355 (361)
361 PF10366 Vps39_1: Vacuolar sor 48.6 1.1E+02 0.0024 24.2 7.2 27 174-200 41-67 (108)
362 KOG2659 LisH motif-containing 47.9 2.2E+02 0.0048 26.0 9.9 99 98-198 22-129 (228)
363 COG0735 Fur Fe2+/Zn2+ uptake r 47.6 94 0.002 26.2 7.1 62 159-221 8-69 (145)
364 COG5108 RPO41 Mitochondrial DN 47.5 93 0.002 33.1 8.1 93 446-543 33-131 (1117)
365 KOG2908 26S proteasome regulat 47.4 1.7E+02 0.0038 28.4 9.2 80 453-532 87-174 (380)
366 PF11846 DUF3366: Domain of un 47.3 69 0.0015 28.6 6.8 31 135-165 142-172 (193)
367 COG4455 ImpE Protein of avirul 46.9 2.3E+02 0.0049 25.9 13.8 123 483-607 4-139 (273)
368 KOG0687 26S proteasome regulat 46.4 2.9E+02 0.0062 26.9 13.9 22 141-162 108-129 (393)
369 PF09670 Cas_Cas02710: CRISPR- 46.3 3.3E+02 0.0071 27.5 12.1 55 489-544 140-198 (379)
370 KOG2908 26S proteasome regulat 46.3 2.5E+02 0.0053 27.5 10.0 86 175-260 78-175 (380)
371 KOG2066 Vacuolar assembly/sort 46.1 4.5E+02 0.0097 29.0 20.1 23 411-433 510-532 (846)
372 COG1747 Uncharacterized N-term 46.0 3.7E+02 0.008 28.0 21.4 167 100-273 64-236 (711)
373 PRK15180 Vi polysaccharide bio 45.9 2E+02 0.0043 29.5 9.8 122 179-302 296-417 (831)
374 PF10345 Cohesin_load: Cohesin 45.3 4.4E+02 0.0096 28.7 31.8 132 68-200 102-253 (608)
375 COG2178 Predicted RNA-binding 44.6 2.3E+02 0.005 25.2 11.6 111 483-603 32-151 (204)
376 PRK10564 maltose regulon perip 44.0 52 0.0011 31.4 5.4 45 476-520 253-297 (303)
377 KOG4648 Uncharacterized conser 43.8 1.5E+02 0.0033 28.8 8.3 48 145-193 105-152 (536)
378 KOG4648 Uncharacterized conser 43.5 2E+02 0.0042 28.1 9.0 45 416-462 107-152 (536)
379 PF14689 SPOB_a: Sensor_kinase 43.2 34 0.00073 23.8 3.1 29 573-601 23-51 (62)
380 PF11846 DUF3366: Domain of un 43.1 98 0.0021 27.6 7.1 29 205-233 142-170 (193)
381 KOG0991 Replication factor C, 42.6 2.8E+02 0.006 25.6 14.8 151 142-302 135-299 (333)
382 KOG4567 GTPase-activating prot 42.1 3.3E+02 0.0071 26.3 10.2 42 193-234 264-305 (370)
383 PRK08691 DNA polymerase III su 41.3 3.7E+02 0.008 29.6 11.7 75 202-279 195-282 (709)
384 COG2976 Uncharacterized protei 41.2 2.6E+02 0.0057 24.9 13.0 133 406-545 54-189 (207)
385 TIGR02508 type_III_yscG type I 40.7 1.7E+02 0.0038 22.8 8.0 77 187-272 20-98 (115)
386 PF10475 DUF2450: Protein of u 40.5 2E+02 0.0043 27.7 9.1 112 142-264 103-219 (291)
387 PF07575 Nucleopor_Nup85: Nup8 40.0 83 0.0018 33.8 7.1 29 255-283 508-536 (566)
388 COG0735 Fur Fe2+/Zn2+ uptake r 39.7 1.5E+02 0.0032 25.1 7.1 62 124-186 8-69 (145)
389 COG5108 RPO41 Mitochondrial DN 39.7 2E+02 0.0043 30.9 9.0 75 142-219 33-115 (1117)
390 PRK13342 recombination factor 39.3 4.4E+02 0.0095 27.0 16.5 55 220-274 243-302 (413)
391 KOG2066 Vacuolar assembly/sort 38.8 5.8E+02 0.013 28.2 26.2 102 144-254 363-467 (846)
392 PF09670 Cas_Cas02710: CRISPR- 37.8 4.4E+02 0.0096 26.6 12.6 57 144-201 138-198 (379)
393 PF14669 Asp_Glu_race_2: Putat 37.3 3E+02 0.0065 24.5 14.7 94 519-628 136-229 (233)
394 cd08819 CARD_MDA5_2 Caspase ac 37.1 1.8E+02 0.004 21.9 7.4 67 425-501 21-87 (88)
395 PF11663 Toxin_YhaV: Toxin wit 37.1 33 0.00072 28.1 2.6 26 118-145 111-136 (140)
396 PHA02875 ankyrin repeat protei 36.4 4.8E+02 0.01 26.6 16.4 25 532-557 297-321 (413)
397 PF12926 MOZART2: Mitotic-spin 35.9 1.9E+02 0.0041 21.8 6.9 41 228-268 29-69 (88)
398 KOG4279 Serine/threonine prote 35.6 1E+02 0.0022 33.3 6.4 138 424-563 181-336 (1226)
399 PRK07003 DNA polymerase III su 35.5 4.8E+02 0.01 29.2 11.5 32 245-277 249-280 (830)
400 cd08326 CARD_CASP9 Caspase act 35.3 1.9E+02 0.0041 21.7 7.2 62 122-191 19-80 (84)
401 KOG4642 Chaperone-dependent E3 35.2 3.7E+02 0.0081 24.9 10.2 64 477-542 41-105 (284)
402 PF10475 DUF2450: Protein of u 34.8 4.1E+02 0.0088 25.6 10.3 110 108-228 104-218 (291)
403 PF11123 DNA_Packaging_2: DNA 34.4 1.8E+02 0.0039 21.0 5.5 63 530-603 12-75 (82)
404 PRK09857 putative transposase; 34.3 3.3E+02 0.007 26.3 9.4 66 210-276 209-274 (292)
405 PRK14956 DNA polymerase III su 34.1 5.7E+02 0.012 26.8 12.6 35 172-206 248-282 (484)
406 PF13934 ELYS: Nuclear pore co 33.6 3.8E+02 0.0083 24.6 11.9 104 140-254 79-184 (226)
407 PF11838 ERAP1_C: ERAP1-like C 33.5 4.6E+02 0.0099 25.5 17.5 117 143-266 135-261 (324)
408 PF09454 Vps23_core: Vps23 cor 32.7 1.2E+02 0.0025 21.5 4.4 28 140-167 11-38 (65)
409 COG2178 Predicted RNA-binding 31.8 3.7E+02 0.0081 23.9 8.4 59 143-201 35-98 (204)
410 KOG3807 Predicted membrane pro 31.5 3.2E+02 0.0069 26.5 8.3 116 153-279 232-348 (556)
411 PF03745 DUF309: Domain of unk 31.4 1.8E+02 0.004 20.2 5.4 46 184-229 11-61 (62)
412 PF10155 DUF2363: Uncharacteri 31.3 3E+02 0.0064 22.6 11.4 50 81-137 4-53 (126)
413 KOG0376 Serine-threonine phosp 31.3 88 0.0019 31.9 5.0 72 488-563 46-118 (476)
414 PRK14958 DNA polymerase III su 31.0 6.7E+02 0.014 26.6 11.9 87 506-605 191-277 (509)
415 KOG4567 GTPase-activating prot 30.8 5E+02 0.011 25.1 9.6 59 500-563 263-321 (370)
416 PRK14958 DNA polymerase III su 30.7 6.8E+02 0.015 26.6 12.2 81 200-283 193-286 (509)
417 COG4785 NlpI Lipoprotein NlpI, 30.6 4.2E+02 0.0092 24.2 14.1 161 104-273 101-268 (297)
418 PF09454 Vps23_core: Vps23 cor 30.5 1E+02 0.0022 21.8 3.8 49 170-219 6-54 (65)
419 PRK14963 DNA polymerase III su 30.2 6.2E+02 0.013 26.8 11.3 31 483-514 245-275 (504)
420 PF12862 Apc5: Anaphase-promot 30.0 1.8E+02 0.004 22.1 5.8 23 486-508 47-69 (94)
421 PRK11639 zinc uptake transcrip 29.2 2.7E+02 0.0059 24.2 7.3 59 164-223 18-76 (169)
422 COG2812 DnaX DNA polymerase II 29.1 6.3E+02 0.014 26.7 10.9 23 185-207 258-280 (515)
423 PRK14951 DNA polymerase III su 29.1 7.9E+02 0.017 26.8 12.4 35 171-206 250-284 (618)
424 KOG0292 Vesicle coat complex C 28.7 1.3E+02 0.0029 33.2 6.0 156 72-270 626-781 (1202)
425 PRK11639 zinc uptake transcrip 28.5 2.6E+02 0.0056 24.3 7.0 45 143-187 31-75 (169)
426 PRK07003 DNA polymerase III su 28.5 8.9E+02 0.019 27.2 12.5 33 172-205 246-278 (830)
427 PF07678 A2M_comp: A-macroglob 28.4 4.9E+02 0.011 24.3 9.5 22 249-270 199-220 (246)
428 KOG4234 TPR repeat-containing 28.3 4.4E+02 0.0096 23.7 9.5 85 182-272 105-198 (271)
429 PRK08691 DNA polymerase III su 28.2 8.5E+02 0.019 27.0 12.5 34 172-206 246-279 (709)
430 KOG2063 Vacuolar assembly/sort 28.1 9.4E+02 0.02 27.4 14.1 191 69-271 507-713 (877)
431 KOG0890 Protein kinase of the 28.0 1.4E+03 0.03 29.4 26.4 150 74-231 1391-1542(2382)
432 smart00386 HAT HAT (Half-A-TPR 27.9 1.2E+02 0.0025 16.8 3.9 15 152-166 2-16 (33)
433 PRK14951 DNA polymerase III su 27.9 8.1E+02 0.018 26.7 11.8 78 200-280 198-288 (618)
434 KOG4642 Chaperone-dependent E3 27.6 5.1E+02 0.011 24.1 10.8 117 384-505 24-142 (284)
435 PF02847 MA3: MA3 domain; Int 27.5 2.9E+02 0.0063 21.7 6.8 64 212-277 7-72 (113)
436 PF08311 Mad3_BUB1_I: Mad3/BUB 27.3 3.5E+02 0.0075 22.1 9.0 43 155-197 81-124 (126)
437 KOG2034 Vacuolar sorting prote 27.3 9.4E+02 0.02 27.1 23.6 84 179-279 365-452 (911)
438 PF04097 Nic96: Nup93/Nic96; 27.2 8.5E+02 0.018 26.6 27.3 59 142-201 116-181 (613)
439 KOG0890 Protein kinase of the 27.0 1.4E+03 0.031 29.2 24.8 145 113-266 1394-1542(2382)
440 COG4003 Uncharacterized protei 26.8 99 0.0022 22.7 3.3 29 579-607 37-65 (98)
441 KOG3364 Membrane protein invol 26.7 3.8E+02 0.0082 22.4 7.0 21 488-508 79-99 (149)
442 COG2909 MalT ATP-dependent tra 26.4 9.8E+02 0.021 27.1 20.3 28 577-604 622-649 (894)
443 PF09868 DUF2095: Uncharacteri 26.3 2.6E+02 0.0056 22.3 5.6 25 143-167 67-91 (128)
444 KOG4507 Uncharacterized conser 26.3 5.4E+02 0.012 27.4 9.5 151 99-253 568-721 (886)
445 PF02847 MA3: MA3 domain; Int 25.8 2.5E+02 0.0053 22.2 6.1 21 143-163 8-28 (113)
446 PF12862 Apc5: Anaphase-promot 25.6 3E+02 0.0066 20.9 6.6 54 491-544 9-70 (94)
447 KOG2297 Predicted translation 25.4 6.2E+02 0.014 24.5 17.3 20 407-426 322-341 (412)
448 COG5187 RPN7 26S proteasome re 25.2 6.1E+02 0.013 24.3 10.5 118 423-545 55-185 (412)
449 smart00777 Mad3_BUB1_I Mad3/BU 24.7 3.9E+02 0.0085 21.9 8.0 74 457-539 49-123 (125)
450 PRK14963 DNA polymerase III su 24.7 8.5E+02 0.019 25.8 11.3 88 189-279 178-278 (504)
451 PF07575 Nucleopor_Nup85: Nup8 24.6 1.9E+02 0.0042 31.1 6.7 23 287-309 506-528 (566)
452 PF04190 DUF410: Protein of un 24.5 6.1E+02 0.013 24.0 12.5 142 381-542 1-148 (260)
453 smart00638 LPD_N Lipoprotein N 23.9 9.3E+02 0.02 25.9 26.6 268 118-468 291-574 (574)
454 KOG0508 Ankyrin repeat protein 23.6 8.3E+02 0.018 25.3 15.0 110 111-231 90-204 (615)
455 PF08870 DUF1832: Domain of un 23.5 3.6E+02 0.0079 21.6 6.4 88 189-290 6-96 (113)
456 cd07153 Fur_like Ferric uptake 23.2 1.8E+02 0.0039 23.1 4.9 44 487-530 7-50 (116)
457 PF09477 Type_III_YscG: Bacter 23.1 3.9E+02 0.0084 21.2 9.1 79 186-271 20-98 (116)
458 PF02607 B12-binding_2: B12 bi 23.0 1.3E+02 0.0029 21.8 3.7 38 492-529 13-50 (79)
459 TIGR02710 CRISPR-associated pr 22.8 8E+02 0.017 24.8 11.8 52 489-540 139-196 (380)
460 COG2909 MalT ATP-dependent tra 22.8 1.1E+03 0.025 26.6 27.9 141 404-548 495-651 (894)
461 PRK09462 fur ferric uptake reg 22.8 4.1E+02 0.0088 22.4 7.1 60 163-223 8-68 (148)
462 PRK09857 putative transposase; 22.5 5.1E+02 0.011 25.0 8.4 66 175-241 209-274 (292)
463 PF12926 MOZART2: Mitotic-spin 22.4 3.5E+02 0.0075 20.4 7.6 43 427-469 29-71 (88)
464 PF06368 Met_asp_mut_E: Methyl 22.3 21 0.00045 35.7 -1.0 150 419-583 28-197 (441)
465 PF09868 DUF2095: Uncharacteri 22.3 2.2E+02 0.0048 22.6 4.6 13 221-233 75-87 (128)
466 TIGR02710 CRISPR-associated pr 22.3 8.2E+02 0.018 24.7 11.4 54 144-197 137-196 (380)
467 PF10255 Paf67: RNA polymerase 21.9 5.7E+02 0.012 26.0 8.8 60 209-268 124-190 (404)
468 cd07153 Fur_like Ferric uptake 21.8 2.2E+02 0.0047 22.6 5.1 46 178-223 6-51 (116)
469 cd00245 Glm_e Coenzyme B12-dep 21.8 1.3E+02 0.0027 30.7 4.2 130 420-557 25-175 (428)
470 PF12454 Ecm33: GPI-anchored c 21.4 21 0.00045 22.2 -0.8 9 2-10 3-11 (40)
471 COG4941 Predicted RNA polymera 21.2 8E+02 0.017 24.2 10.9 117 80-200 270-393 (415)
472 PF08311 Mad3_BUB1_I: Mad3/BUB 20.9 4.7E+02 0.01 21.4 9.4 43 498-540 81-124 (126)
473 PF07443 HARP: HepA-related pr 20.3 40 0.00086 22.8 0.3 33 151-183 6-38 (55)
474 KOG1498 26S proteasome regulat 20.1 9E+02 0.02 24.4 15.7 183 79-270 25-240 (439)
475 PF11817 Foie-gras_1: Foie gra 20.1 5.6E+02 0.012 23.9 8.1 86 422-509 161-247 (247)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.8e-67 Score=572.76 Aligned_cols=465 Identities=15% Similarity=0.178 Sum_probs=268.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHH
Q 006615 69 PFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS 148 (638)
Q Consensus 69 ~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~ 148 (638)
+..++..|++.|++++|+++|++|.+.+-+.|+...++.++..|.+.|.+++|..+++.|.. ||..+|+.++.+|+
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~ 448 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCA 448 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHH
Confidence 44455666666666666666666665543445555555555666666666666665555543 55566666666666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006615 149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALE 228 (638)
Q Consensus 149 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 228 (638)
+.|+++.|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.+
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~ 528 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHh--CCCCCCHHHH-HHHHHHHHcCChHHHHHHHHHhCcC
Q 006615 229 VFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD--DGKFPGRAMR-VALERMQEMGFIQGANEFLREMLPD 305 (638)
Q Consensus 229 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~ 305 (638)
+|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..++ .++.+|++.|++++|.++|++|.+.
T Consensus 529 lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 666666556666666666666666666666666666666643 4555655555 5555666666666666666655443
Q ss_pred ccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCC
Q 006615 306 KRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKS 385 (638)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (638)
+..++.. ....+...+.+.|+
T Consensus 609 gi~p~~~-----------------------------------------------------------tynsLI~ay~k~G~ 629 (1060)
T PLN03218 609 NIKGTPE-----------------------------------------------------------VYTIAVNSCSQKGD 629 (1060)
T ss_pred CCCCChH-----------------------------------------------------------HHHHHHHHHHhcCC
Confidence 3322211 11223444455555
Q ss_pred hhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHH
Q 006615 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465 (638)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 465 (638)
+++|.++|++| ...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+
T Consensus 630 ~deAl~lf~eM-~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~ 708 (1060)
T PLN03218 630 WDFALSIYDDM-KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708 (1060)
T ss_pred HHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 66666666555 34555566666666666666666666666666666666666666666666666666666666666666
Q ss_pred hchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615 466 DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545 (638)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~ 545 (638)
+|.+. ...|+. .+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|
T Consensus 709 eM~~~---g~~Pdv-vtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 709 DIKSI---KLRPTV-STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHHc---CCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 55443 223442 55666666666666666666666666655666666666666666666666666666666666666
Q ss_pred CCCCHhhHHHHHHHHHH-----------------------------H------hhhCCCCCCHHHHHHHHHHHhccCcHH
Q 006615 546 VEPDAYMFKVLIQAYCK-----------------------------Y------LSNSNLMPDAATKELLKKSLWKEGRRK 590 (638)
Q Consensus 546 ~~p~~~~~~~li~~~~~-----------------------------~------m~~~g~~p~~~~~~~li~~~~~~g~~~ 590 (638)
+.||..+|++|+..|.+ + |.+.|+.||..||+.++.++++.+.++
T Consensus 785 i~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~ 864 (1060)
T PLN03218 785 IKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDAT 864 (1060)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHH
Confidence 66666666665543321 0 555555666555555555555555555
Q ss_pred HHHHHHHHHHH
Q 006615 591 EAAAVEERCEK 601 (638)
Q Consensus 591 ~A~~~~~~~~~ 601 (638)
.+.++++.|..
T Consensus 865 ~~~~m~~~m~~ 875 (1060)
T PLN03218 865 LRNRLIENLGI 875 (1060)
T ss_pred HHHHHHHHhcc
Confidence 55555555443
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9e-67 Score=567.22 Aligned_cols=519 Identities=13% Similarity=0.118 Sum_probs=457.9
Q ss_pred hhhHHHHhchhhhHHHHHHHHhcCCCCcchhhhccCCCCHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHH
Q 006615 30 TNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALA 109 (638)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li 109 (638)
...+..+++ .+.++.+..+|+.+......+ .....+..++..+.+.|.+++|+.+|+.|.. |+..+|+.++
T Consensus 374 ~~~y~~l~r-~G~l~eAl~Lfd~M~~~gvv~---~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL 444 (1060)
T PLN03218 374 IDAYNRLLR-DGRIKDCIDLLEDMEKRGLLD---MDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLM 444 (1060)
T ss_pred HHHHHHHHH-CcCHHHHHHHHHHHHhCCCCC---chHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHH
Confidence 334444443 345566677777665433221 1122344578889999999999999999874 8999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChH
Q 006615 110 TVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF 189 (638)
Q Consensus 110 ~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 189 (638)
.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--CCCccCHhHHHHHHHHHHccCCHHHHHHHHHH
Q 006615 190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL--MRIKRTSKQYLILVEGFVGVERFDEAKSLLNE 267 (638)
Q Consensus 190 ~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 267 (638)
+|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.. .|+.||..+|++||.+|++.|++++|.++|++
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999976 68999999999999999999999999999999
Q ss_pred HHhCCCCCCHHHH-HHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCCh
Q 006615 268 MRDDGKFPGRAMR-VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDP 346 (638)
Q Consensus 268 m~~~g~~p~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (638)
|.+.|+.|+..+| .++.+|++.|++++|.++|++|...+..|+..
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~---------------------------------- 650 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV---------------------------------- 650 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----------------------------------
Confidence 9999999999888 88999999999999999999998776555432
Q ss_pred hhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHH
Q 006615 347 KALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVD 426 (638)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 426 (638)
....+...+.+.|++++|.++|+.| .+.|+.||..+|+++|.+|++.|++++|.
T Consensus 651 -------------------------TynsLI~a~~k~G~~eeA~~l~~eM-~k~G~~pd~~tynsLI~ay~k~G~~eeA~ 704 (1060)
T PLN03218 651 -------------------------FFSALVDVAGHAGDLDKAFEILQDA-RKQGIKLGTVSYSSLMGACSNAKNWKKAL 704 (1060)
T ss_pred -------------------------HHHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 1234667788899999999999998 57799999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHH
Q 006615 427 RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506 (638)
Q Consensus 427 ~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 506 (638)
++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|... ...||. .+|+++|.+|++.|++++|.++|++|
T Consensus 705 ~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~---Gi~Pd~-~Ty~sLL~a~~k~G~le~A~~l~~~M 780 (1060)
T PLN03218 705 ELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL---GLCPNT-ITYSILLVASERKDDADVGLDLLSQA 780 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---CCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876 446775 89999999999999999999999999
Q ss_pred HhCCCCcchhhHHHHHHHHHc----c-------------------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHH
Q 006615 507 IFSGIVPDVQTFSGLMYHFAL----Q-------------------GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY 563 (638)
Q Consensus 507 ~~~g~~p~~~t~~~li~~~~~----~-------------------g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 563 (638)
.+.|+.||..+|++|+..|.+ . +..++|..+|++|++.|+.||..||+.+|.++++.
T Consensus 781 ~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~ 860 (1060)
T PLN03218 781 KEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLP 860 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc
Confidence 999999999999999976432 1 23478999999999999999999999999766544
Q ss_pred ------------hhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCcccccceeeeeccccc
Q 006615 564 ------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAVSSADLT 623 (638)
Q Consensus 564 ------------m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 623 (638)
|...+..|+..+|++||+++++. .++|..++++|.+.|+.|....+..-|...-..+.
T Consensus 861 ~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~~~~~ 930 (1060)
T PLN03218 861 HDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVSFKKSPIVIDAEELP 930 (1060)
T ss_pred ccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcccccCceEEEcccCc
Confidence 44567788899999999999543 37899999999999998877666667877555443
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.9e-63 Score=551.49 Aligned_cols=553 Identities=15% Similarity=0.151 Sum_probs=404.8
Q ss_pred hhHHHHhchhhhHHHHHHHHhcCCCCcchhhhccCCCCHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHH
Q 006615 31 NKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALAT 110 (638)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~ 110 (638)
+.+...+.+.+.++.+..+|+.+..+. ..++..++.+|++.|++++|+++|+.|... |+.||..+|+.+++
T Consensus 125 n~li~~~~~~g~~~~A~~~f~~m~~~d--------~~~~n~li~~~~~~g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~ 195 (857)
T PLN03077 125 NAMLSMFVRFGELVHAWYVFGKMPERD--------LFSWNVLVGGYAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLR 195 (857)
T ss_pred HHHHHHHHhCCChHHHHHHHhcCCCCC--------eeEHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHH
Confidence 344444455566677777787776533 456777999999999999999999999977 78999999988888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHH
Q 006615 111 VLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190 (638)
Q Consensus 111 ~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 190 (638)
+|++.+++..+.+++..|.+.|+.||..+|++|+.+|+++|++++|..+|++|.. ||..+||+||.+|++.|++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~e 271 (857)
T PLN03077 196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLE 271 (857)
T ss_pred HhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHH
Confidence 8888888888888888888878778777777777777777777777777777753 456777777777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270 (638)
Q Consensus 191 A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 270 (638)
|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.+++..|.+.|+.||..+||+||.+|++.|++++|.++|++|..
T Consensus 272 Al~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 351 (857)
T PLN03077 272 GLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET 351 (857)
T ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Confidence 77777777777777777777777776666666666666666666666666666666666666666666666666666642
Q ss_pred CCCCCCHHHH-HHHHHHHHcCChHHHHHHHHHhCcCccccccccccC-----CCCCccccccC--------CCCCccccc
Q 006615 271 DGKFPGRAMR-VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED-----GSDDDEDENDD--------NNSGVRIAY 336 (638)
Q Consensus 271 ~g~~p~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--------~~~~~~~~~ 336 (638)
||..++ +++.+|++.|++++|.++|++|...+..|+...+.. ...+..+.... ........+
T Consensus 352 ----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~ 427 (857)
T PLN03077 352 ----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA 427 (857)
T ss_pred ----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHH
Confidence 344343 556666666666666666666655555444332210 00000000000 000000011
Q ss_pred cccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHH
Q 006615 337 GVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTIL 416 (638)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 416 (638)
+..+..+...+.+..+...+.. ....+...|+. +...+...|+.++|+++|++|. .++.||..||+.+|.+|
T Consensus 428 n~Li~~y~k~g~~~~A~~vf~~----m~~~d~vs~~~--mi~~~~~~g~~~eA~~lf~~m~--~~~~pd~~t~~~lL~a~ 499 (857)
T PLN03077 428 NALIEMYSKCKCIDKALEVFHN----IPEKDVISWTS--IIAGLRLNNRCFEALIFFRQML--LTLKPNSVTLIAALSAC 499 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHh----CCCCCeeeHHH--HHHHHHHCCCHHHHHHHHHHHH--hCCCCCHhHHHHHHHHH
Confidence 1122222222333333222110 11122334444 4455667889999999999985 35899999999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCCh
Q 006615 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496 (638)
Q Consensus 417 ~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 496 (638)
++.|+++.+.+++..+.+.|+.+|..+++++|++|+++|++++|.++|+.+ .|+ ..+||+||.+|++.|+.
T Consensus 500 ~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--------~~d-~~s~n~lI~~~~~~G~~ 570 (857)
T PLN03077 500 ARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--------EKD-VVSWNILLTGYVAHGKG 570 (857)
T ss_pred hhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--------CCC-hhhHHHHHHHHHHcCCH
Confidence 999999999999999999999999999999999999999999999999985 344 48999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHH-hCCCCCCHhhHHHHHHHHHHH---------hhh
Q 006615 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR-QNGVEPDAYMFKVLIQAYCKY---------LSN 566 (638)
Q Consensus 497 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~-~~~~~p~~~~~~~li~~~~~~---------m~~ 566 (638)
++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.|. +.|+.|+..+|++++++|++. +.+
T Consensus 571 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 571 SMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 789999999999999999998 445
Q ss_pred CCCCCCHHHHHHHHHH----------------------------------HhccCcHHHHHHHHHHHHHccCCCCccccc
Q 006615 567 SNLMPDAATKELLKKS----------------------------------LWKEGRRKEAAAVEERCEKINDVPSLALRG 612 (638)
Q Consensus 567 ~g~~p~~~~~~~li~~----------------------------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 612 (638)
..++||..+|++|+.+ |+..|+|++|.++.+.|++.|. .+..+
T Consensus 651 m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~---~k~~g 727 (857)
T PLN03077 651 MPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGL---TVDPG 727 (857)
T ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCC---CCCCC
Confidence 5677887777766665 4567888899999999999888 45577
Q ss_pred ceeeeecc
Q 006615 613 HIWAVSSA 620 (638)
Q Consensus 613 ~~w~~~~~ 620 (638)
.+|...++
T Consensus 728 ~s~ie~~~ 735 (857)
T PLN03077 728 CSWVEVKG 735 (857)
T ss_pred ccEEEECC
Confidence 88887543
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.4e-62 Score=530.12 Aligned_cols=471 Identities=15% Similarity=0.167 Sum_probs=427.5
Q ss_pred CCHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHH
Q 006615 67 LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQW 146 (638)
Q Consensus 67 ~~~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~ 146 (638)
.++..++..|.+.|++++|+++|++|....++.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.|+.+
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 46777899999999999999999999987668899999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006615 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226 (638)
Q Consensus 147 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A 226 (638)
|++.|+++.|.++|++|.+ ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+
T Consensus 168 y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 9999999999999999975 679999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHcCChHHHHHHHHHhCcC
Q 006615 227 LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR-VALERMQEMGFIQGANEFLREMLPD 305 (638)
Q Consensus 227 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~ 305 (638)
.+++..+.+.|+.||..+||+||++|++.|++++|.++|++|.. +|..++ +++.+|++.|++++|.++|++|...
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999964 466666 8999999999999999999999766
Q ss_pred ccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCC
Q 006615 306 KRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKS 385 (638)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (638)
+..|+.. +...+...+.+.|.
T Consensus 320 g~~pd~~-----------------------------------------------------------t~~~ll~a~~~~g~ 340 (697)
T PLN03081 320 GVSIDQF-----------------------------------------------------------TFSIMIRIFSRLAL 340 (697)
T ss_pred CCCCCHH-----------------------------------------------------------HHHHHHHHHHhccc
Confidence 5544432 22345667778899
Q ss_pred hhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHH
Q 006615 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465 (638)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 465 (638)
+++|.+++..+ .+.|+.||..+|+++|.+|++.|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|+
T Consensus 341 ~~~a~~i~~~m-~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~ 415 (697)
T PLN03081 341 LEHAKQAHAGL-IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFE 415 (697)
T ss_pred hHHHHHHHHHH-HHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999998 5778999999999999999999999999999999863 688999999999999999999999999
Q ss_pred hchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHh-CCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615 466 DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF-SGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544 (638)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 544 (638)
+|.+. ...||. .+|+++|.+|++.|..++|.++|++|.+ .|+.|+..+|++++.+|++.|++++|.+++++|
T Consensus 416 ~M~~~---g~~Pd~-~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~--- 488 (697)
T PLN03081 416 RMIAE---GVAPNH-VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA--- 488 (697)
T ss_pred HHHHh---CCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---
Confidence 99876 457775 8999999999999999999999999976 699999999999999999999999999998765
Q ss_pred CCCCCHhhHHHHHHHHHHH----------hhhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCcccccc
Q 006615 545 GVEPDAYMFKVLIQAYCKY----------LSNSNLMPD-AATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGH 613 (638)
Q Consensus 545 ~~~p~~~~~~~li~~~~~~----------m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 613 (638)
++.|+..+|++|+.+|+.. ..-.++.|+ ..+|..|++.|++.|++++|.+++++|++.|. .++++.
T Consensus 489 ~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~---~k~~g~ 565 (697)
T PLN03081 489 PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL---SMHPAC 565 (697)
T ss_pred CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC---ccCCCe
Confidence 6889999999999999876 112467775 67999999999999999999999999999998 345688
Q ss_pred eeeeec
Q 006615 614 IWAVSS 619 (638)
Q Consensus 614 ~w~~~~ 619 (638)
+|...+
T Consensus 566 s~i~~~ 571 (697)
T PLN03081 566 TWIEVK 571 (697)
T ss_pred eEEEEC
Confidence 997744
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-61 Score=537.86 Aligned_cols=493 Identities=15% Similarity=0.193 Sum_probs=325.7
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhc
Q 006615 71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS 150 (638)
Q Consensus 71 ~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~ 150 (638)
.++..+.+.+.++.|..++..+.+. +..++...++.++..|++.|+++.|.++|++|.+ ||..+||.++.+|++.
T Consensus 91 ~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~ 165 (857)
T PLN03077 91 ALFRLCEWKRAVEEGSRVCSRALSS-HPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKA 165 (857)
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHc-CCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhC
Confidence 3444445555555555555554443 2344444555555555555555555555555542 4445555555555555
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006615 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230 (638)
Q Consensus 151 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~ 230 (638)
|++++|.++|++|...|+.||..||+++|++|++.++++.+.+++..|.+.|+.||..+||+||.+|++.|++++|.++|
T Consensus 166 g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf 245 (857)
T PLN03077 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF 245 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHcCChHHHHHHHHHhCcCcccc
Q 006615 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR-VALERMQEMGFIQGANEFLREMLPDKRIK 309 (638)
Q Consensus 231 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 309 (638)
++|. .||..+||+||.+|++.|++++|.++|++|...|+.||..+| .++.+|++.|+.+.|.+++..|.+.+..+
T Consensus 246 ~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 321 (857)
T PLN03077 246 DRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321 (857)
T ss_pred hcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc
Confidence 5554 345555555555555555555555555555555555555554 45555555555555555555554444433
Q ss_pred ccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHH
Q 006615 310 NVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETA 389 (638)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 389 (638)
+...+ +..+..+...+.+..+...+.. ........ ...+...+.+.|++++|
T Consensus 322 d~~~~----------------------n~Li~~y~k~g~~~~A~~vf~~----m~~~d~~s--~n~li~~~~~~g~~~~A 373 (857)
T PLN03077 322 DVSVC----------------------NSLIQMYLSLGSWGEAEKVFSR----METKDAVS--WTAMISGYEKNGLPDKA 373 (857)
T ss_pred chHHH----------------------HHHHHHHHhcCCHHHHHHHHhh----CCCCCeee--HHHHHHHHHhCCCHHHH
Confidence 32211 1111112222222222111110 00111223 34456667788999999
Q ss_pred HHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchh
Q 006615 390 WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRT 469 (638)
Q Consensus 390 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 469 (638)
+++|+.| ...|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.||++|++.|++++|.++|++|.+
T Consensus 374 ~~lf~~M-~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 374 LETYALM-EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred HHHHHHH-HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence 9999998 577899999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred ccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC-------------------------------------
Q 006615 470 LCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIV------------------------------------- 512 (638)
Q Consensus 470 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~------------------------------------- 512 (638)
++ +.+||++|.+|++.|+.++|+++|++|.. +++
T Consensus 453 -------~d-~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~ 523 (857)
T PLN03077 453 -------KD-VISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD 523 (857)
T ss_pred -------CC-eeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc
Confidence 33 26788888888887777777777777764 344
Q ss_pred ----------------------------cchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHH-
Q 006615 513 ----------------------------PDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY- 563 (638)
Q Consensus 513 ----------------------------p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~- 563 (638)
||.++||++|.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|++.
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 603 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence 455667888888899999999999999999999999999999999999976
Q ss_pred -----------hh-hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCcccccceeee
Q 006615 564 -----------LS-NSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAV 617 (638)
Q Consensus 564 -----------m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~w~~ 617 (638)
|. +.|+.|+..+|++++++|++.|++++|.+++++| |..|+...|.+
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-------~~~pd~~~~~a 662 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-------PITPDPAVWGA 662 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-------CCCCCHHHHHH
Confidence 76 7899999999999999999999999999999986 45677777765
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.8e-59 Score=506.25 Aligned_cols=459 Identities=11% Similarity=0.158 Sum_probs=408.2
Q ss_pred chhhHHHHhchhhhHHHHHHHHhcCCCCcchhhhccCCCCHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHH
Q 006615 29 FTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHAL 108 (638)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l 108 (638)
+++.+..+...++. +.+..+|+.+.... .+.+....+..++.++.+.++++.|.+++..|.+. |+.||..+|+.+
T Consensus 90 ~~~~i~~l~~~g~~-~~Al~~f~~m~~~~---~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~-g~~~~~~~~n~L 164 (697)
T PLN03081 90 LCSQIEKLVACGRH-REALELFEILEAGC---PFTLPASTYDALVEACIALKSIRCVKAVYWHVESS-GFEPDQYMMNRV 164 (697)
T ss_pred HHHHHHHHHcCCCH-HHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCcchHHHHHH
Confidence 34455555554444 44444554442211 01123455677999999999999999999999988 799999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCCh
Q 006615 109 ATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN 188 (638)
Q Consensus 109 i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 188 (638)
+..|++.|+++.|.++|++|.+ ||..+||+++.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 9999999999999999999975 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 006615 189 FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268 (638)
Q Consensus 189 ~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 268 (638)
+.+.+++..+.+.|+.||..+|++||++|++.|++++|.++|++|. .+|.++||+||.+|++.|++++|.++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 579999999999999999999999999999
Q ss_pred HhCCCCCCHHHH-HHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChh
Q 006615 269 RDDGKFPGRAMR-VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPK 347 (638)
Q Consensus 269 ~~~g~~p~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (638)
.+.|+.||..++ +++.+|++.|++++|.+++..|.+.+..++..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~----------------------------------- 361 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV----------------------------------- 361 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCee-----------------------------------
Confidence 999999999998 88999999999999999999997766544432
Q ss_pred hHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHH
Q 006615 348 ALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDR 427 (638)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 427 (638)
....+..++.++|++++|.++|+.|. .||..+||+||.+|++.|+.++|.+
T Consensus 362 ------------------------~~~~Li~~y~k~G~~~~A~~vf~~m~-----~~d~~t~n~lI~~y~~~G~~~~A~~ 412 (697)
T PLN03081 362 ------------------------ANTALVDLYSKWGRMEDARNVFDRMP-----RKNLISWNALIAGYGNHGRGTKAVE 412 (697)
T ss_pred ------------------------ehHHHHHHHHHCCCHHHHHHHHHhCC-----CCCeeeHHHHHHHHHHcCCHHHHHH
Confidence 23457788889999999999999985 4799999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 006615 428 LIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMI 507 (638)
Q Consensus 428 l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 507 (638)
+|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+..+. .|+. .+|+++|++|++.|++++|.+++++|
T Consensus 413 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~--~p~~-~~y~~li~~l~r~G~~~eA~~~~~~~- 488 (697)
T PLN03081 413 MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI--KPRA-MHYACMIELLGREGLLDEAYAMIRRA- 488 (697)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC--CCCc-cchHhHHHHHHhcCCHHHHHHHHHHC-
Confidence 9999999999999999999999999999999999999999875443 4553 79999999999999999999999876
Q ss_pred hCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHH------------hhhCCCCCC
Q 006615 508 FSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD-AYMFKVLIQAYCKY------------LSNSNLMPD 572 (638)
Q Consensus 508 ~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~------------m~~~g~~p~ 572 (638)
++.||..+|++|+.+|...|+++.|.++++++.+ +.|+ ..+|+.|++.|++. |++.|+++.
T Consensus 489 --~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 489 --PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred --CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 5789999999999999999999999999999974 5565 67999999999987 888888644
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=3.3e-24 Score=244.37 Aligned_cols=520 Identities=12% Similarity=0.020 Sum_probs=348.4
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhc
Q 006615 71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS 150 (638)
Q Consensus 71 ~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~ 150 (638)
.+...+...|++++|...|+.+.+.. +.+...+..+...+.+.|++++|...++.+.... +.+...+..+...+.+.
T Consensus 300 ~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 376 (899)
T TIGR02917 300 LAGASEYQLGNLEQAYQYLNQILKYA--PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLAL 376 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHC
Confidence 34556778889999999998887653 2344567777888888899999999888887653 44566788888888899
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006615 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230 (638)
Q Consensus 151 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~ 230 (638)
|++++|..+|+++.+.+ +.+...|..+...+...|++++|.+.|+++.+.... +......++..+.+.|++++|.+++
T Consensus 377 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 454 (899)
T TIGR02917 377 GDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAA 454 (899)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999998887764 345667778888888888899898888888775422 3445566777888888888888888
Q ss_pred HhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccc
Q 006615 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKN 310 (638)
Q Consensus 231 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 310 (638)
+.+.... ..+..+|..+...+...|++++|.+.|+++.+.........+.+...+...|++++|.+.++.+........
T Consensus 455 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 533 (899)
T TIGR02917 455 KKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNL 533 (899)
T ss_pred HHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH
Confidence 8877542 346677888888888888888888888888765443333445677778888888888888887753221100
Q ss_pred cccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHH
Q 006615 311 VRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW 390 (638)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 390 (638)
.... .. ...+...+....+...+... .. ..+........++..+...|++++|.
T Consensus 534 ~~~~--------------------~l---~~~~~~~~~~~~A~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~~~~~A~ 587 (899)
T TIGR02917 534 RAIL--------------------AL---AGLYLRTGNEEEAVAWLEKA-AE--LNPQEIEPALALAQYYLGKGQLKKAL 587 (899)
T ss_pred HHHH--------------------HH---HHHHHHcCCHHHHHHHHHHH-HH--hCccchhHHHHHHHHHHHCCCHHHHH
Confidence 0000 00 00000000011111000000 00 01111112234566677788888888
Q ss_pred HHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhc
Q 006615 391 HFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470 (638)
Q Consensus 391 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 470 (638)
+.++.+.... +.+...|..+..++...|++++|...|+.+.+... .+...+..+..+|.+.|++++|...|+++.+.
T Consensus 588 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 664 (899)
T TIGR02917 588 AILNEAADAA--PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALEL 664 (899)
T ss_pred HHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 8888875332 44667788888888888888888888888876553 25667777888888888888888888887654
Q ss_pred cCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 006615 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA 550 (638)
Q Consensus 471 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~ 550 (638)
.|+...+|..+...+...|++++|.++++.+.+.+ +++...+..+...+...|++++|.+.|+.+...+ |+.
T Consensus 665 -----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~ 736 (899)
T TIGR02917 665 -----KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSS 736 (899)
T ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCc
Confidence 33334678888888888888888888888887764 3456667777778888888888888888877653 555
Q ss_pred hhHHHHHHHHHHH---------hh--hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCcccccceeeeec
Q 006615 551 YMFKVLIQAYCKY---------LS--NSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAVSS 619 (638)
Q Consensus 551 ~~~~~li~~~~~~---------m~--~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~w~~~~ 619 (638)
.++..+...+.+. +. -.....+...+..+...|.+.|++++|.+.++++.+..+..+.......|....
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE 816 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 5566666666544 11 011233466777777777788888888888888877665444333444454433
Q ss_pred cccchhcccccccc
Q 006615 620 ADLTRVHSIYRNSI 633 (638)
Q Consensus 620 ~~~~~~~~~~~~~~ 633 (638)
....++++.|++++
T Consensus 817 ~~~~~A~~~~~~~~ 830 (899)
T TIGR02917 817 LKDPRALEYAEKAL 830 (899)
T ss_pred cCcHHHHHHHHHHH
Confidence 32255555555544
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=1.6e-23 Score=238.63 Aligned_cols=486 Identities=14% Similarity=0.079 Sum_probs=355.4
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhc
Q 006615 71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS 150 (638)
Q Consensus 71 ~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~ 150 (638)
.+...+...|++++|+..|+.+.+.... .......++..+.+.|++++|..+++.+... .+.+..++..+...|...
T Consensus 402 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 478 (899)
T TIGR02917 402 QLGISKLSQGDPSEAIADLETAAQLDPE--LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGK 478 (899)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCc--chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhC
Confidence 3566777889999999999988865322 2235566777888999999999999988764 355677888899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006615 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230 (638)
Q Consensus 151 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~ 230 (638)
|++++|...|+++.+.+ +.+...+..+...+...|++++|.+.|+++.+.+ +.+..++..+...+.+.|+.++|..+|
T Consensus 479 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 556 (899)
T TIGR02917 479 GDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWL 556 (899)
T ss_pred CCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999988764 4456778888889999999999999999998764 236788888999999999999999999
Q ss_pred HhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccc
Q 006615 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKN 310 (638)
Q Consensus 231 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 310 (638)
+++.+.+ ..+...+..+...|.+.|++++|..+++++..........++.+...+...|++++|...++.+.....
T Consensus 557 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--- 632 (899)
T TIGR02917 557 EKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP--- 632 (899)
T ss_pred HHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---
Confidence 9887654 346677888999999999999999999998775544334455778889999999999999988743211
Q ss_pred cccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHH
Q 006615 311 VRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW 390 (638)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 390 (638)
........++..+...|++++|.
T Consensus 633 ---------------------------------------------------------~~~~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 633 ---------------------------------------------------------DSALALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred ---------------------------------------------------------CChHHHHHHHHHHHHcCCHHHHH
Confidence 00111233566666778888888
Q ss_pred HHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhc
Q 006615 391 HFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470 (638)
Q Consensus 391 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 470 (638)
..|..+.... +.+..++..+...+...|++++|.++++.+...+. .+...+..+...+.+.|++++|...|+.+...
T Consensus 656 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 732 (899)
T TIGR02917 656 TSLKRALELK--PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKR 732 (899)
T ss_pred HHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 8888775432 33567788888888888888888888888877663 35667777778888888888888888887664
Q ss_pred cCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 006615 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA 550 (638)
Q Consensus 471 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~ 550 (638)
. |+. .++..+...+.+.|+.++|.+.++++.+.. +.+...++.+...|...|++++|.+.|+++.+.. .++.
T Consensus 733 ~-----~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 804 (899)
T TIGR02917 733 A-----PSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNA 804 (899)
T ss_pred C-----CCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCH
Confidence 2 222 456667788888888888888888887753 3466777777888888888888888888887754 3456
Q ss_pred hhHHHHHHHHHHH-------h--hhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCcccccceeee-ec
Q 006615 551 YMFKVLIQAYCKY-------L--SNSNLMPD-AATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAV-SS 619 (638)
Q Consensus 551 ~~~~~li~~~~~~-------m--~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~w~~-~~ 619 (638)
.+++.+...+.+. + +.....|+ ..++..+...+.+.|++++|.++++++.+.++..|..-....+.. ..
T Consensus 805 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 884 (899)
T TIGR02917 805 VVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLAT 884 (899)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Confidence 6666666655543 1 11123343 456677788888888888888888888887764333222222222 35
Q ss_pred cccchhcccccccc
Q 006615 620 ADLTRVHSIYRNSI 633 (638)
Q Consensus 620 ~~~~~~~~~~~~~~ 633 (638)
+..+++...|+.++
T Consensus 885 g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 885 GRKAEARKELDKLL 898 (899)
T ss_pred CCHHHHHHHHHHHh
Confidence 55666666665543
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=2.3e-19 Score=183.01 Aligned_cols=302 Identities=12% Similarity=0.090 Sum_probs=227.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc
Q 006615 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN---SRTYTVMIEHLVNL 220 (638)
Q Consensus 144 l~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~ty~~li~~~~~~ 220 (638)
...+...|++++|...|+++.+.+ +.+..++..+...+.+.|++++|.++++.+.+.+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344567788888888888888764 34566788888888888888888888888877532221 24577778888888
Q ss_pred CCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH----HH-HHHHHHHHcCChHHH
Q 006615 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA----MR-VALERMQEMGFIQGA 295 (638)
Q Consensus 221 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----~~-~ll~~~~~~g~~~~a 295 (638)
|++++|.++|+++.+.. ..+..+++.++..+.+.|++++|.+.++++.+.+..+... .+ .+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 88888888888887642 3466788888888888888888888888887765444321 11 344556677777777
Q ss_pred HHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHH
Q 006615 296 NEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL 375 (638)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (638)
...++++...
T Consensus 200 ~~~~~~al~~---------------------------------------------------------------------- 209 (389)
T PRK11788 200 RALLKKALAA---------------------------------------------------------------------- 209 (389)
T ss_pred HHHHHHHHhH----------------------------------------------------------------------
Confidence 7777766311
Q ss_pred HHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccC
Q 006615 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455 (638)
Q Consensus 376 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g 455 (638)
. +.+...+..+...+.+.|++++|.++++++...+......+++.+..+|.+.|
T Consensus 210 ------------------------~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 263 (389)
T PRK11788 210 ------------------------D--PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALG 263 (389)
T ss_pred ------------------------C--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcC
Confidence 0 11344667788888999999999999999887654433567788889999999
Q ss_pred CHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHc---cCCHH
Q 006615 456 KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFAL---QGDEK 532 (638)
Q Consensus 456 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~---~g~~~ 532 (638)
++++|...++.+.+.. |+. ..+..++..+.+.|+.++|.++++++.+. .|+..+++.++..+.. .|+.+
T Consensus 264 ~~~~A~~~l~~~~~~~-----p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~ 335 (389)
T PRK11788 264 DEAEGLEFLRRALEEY-----PGA-DLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAK 335 (389)
T ss_pred CHHHHHHHHHHHHHhC-----CCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccch
Confidence 9999999999887652 332 34588889999999999999999998875 6899999988887764 55889
Q ss_pred HHHHHHHHHHhCCCCCCHh
Q 006615 533 IVQKLFSMVRQNGVEPDAY 551 (638)
Q Consensus 533 ~a~~l~~~m~~~~~~p~~~ 551 (638)
++..++++|.+.++.|+..
T Consensus 336 ~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 336 ESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hHHHHHHHHHHHHHhCCCC
Confidence 9999999999888777654
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=1.2e-18 Score=177.86 Aligned_cols=299 Identities=14% Similarity=0.084 Sum_probs=185.6
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHhHHHHHHHHHhcCChH
Q 006615 113 AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS---TESYNIVMSVYAKTGKNF 189 (638)
Q Consensus 113 ~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~ 189 (638)
...|+++.|...|.++.+.+ +.+..++..+...+.+.|++++|..+++.+...+..++ ..++..+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34455666666666655542 22334455555666666666666666666554321111 234555566666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccC----HhHHHHHHHHHHccCCHHHHHHHH
Q 006615 190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT----SKQYLILVEGFVGVERFDEAKSLL 265 (638)
Q Consensus 190 ~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~l~ 265 (638)
+|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+.+.+..++ ...|..+...+.+.|++++|...|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6666666665531 22455566666666666666666666666654332111 113445555666667777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCC
Q 006615 266 NEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLD 345 (638)
Q Consensus 266 ~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (638)
+++.+.........+.+...+.+.|++++|.++++++....
T Consensus 204 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------------------------------------- 244 (389)
T PRK11788 204 KKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQD--------------------------------------- 244 (389)
T ss_pred HHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---------------------------------------
Confidence 76655432222222345556666666666666666552100
Q ss_pred hhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHH
Q 006615 346 PKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELV 425 (638)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 425 (638)
-.....+++.+..+|++.|++++|
T Consensus 245 --------------------------------------------------------p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 245 --------------------------------------------------------PEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred --------------------------------------------------------hhhHHHHHHHHHHHHHHcCCHHHH
Confidence 001134567788888999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHc---cCChHHHHHH
Q 006615 426 DRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK---CKRDFDAINV 502 (638)
Q Consensus 426 ~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~l 502 (638)
...++++.+.. |+...+..+...+.+.|++++|..+++++.+. .|+. ..++.++..+.. .|+.+++..+
T Consensus 269 ~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~-----~P~~-~~~~~l~~~~~~~~~~g~~~~a~~~ 340 (389)
T PRK11788 269 LEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR-----HPSL-RGFHRLLDYHLAEAEEGRAKESLLL 340 (389)
T ss_pred HHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CcCH-HHHHHHHHHhhhccCCccchhHHHH
Confidence 99999888764 45556688888999999999999999887664 4554 577877877664 5689999999
Q ss_pred HHHHHhCCCCcchh
Q 006615 503 LEEMIFSGIVPDVQ 516 (638)
Q Consensus 503 ~~~m~~~g~~p~~~ 516 (638)
+++|.+.+++|+..
T Consensus 341 ~~~~~~~~~~~~p~ 354 (389)
T PRK11788 341 LRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHhCCCC
Confidence 99999988877765
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=3.9e-18 Score=165.45 Aligned_cols=461 Identities=14% Similarity=0.027 Sum_probs=331.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHH
Q 006615 69 PFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS 148 (638)
Q Consensus 69 ~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~ 148 (638)
...+.+-+-+.|++.+|.+--..+-+.+....+ ..-.+-..+....+.+....--....+ ..+.-..+|..+...+-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~--~llll~ai~~q~~r~d~s~a~~~~a~r-~~~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTE--RLLLLSAIFFQGSRLDKSSAGSLLAIR-KNPQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCccc--ceeeehhhhhcccchhhhhhhhhhhhh-ccchHHHHHHHHHHHHH
Confidence 344677888999999999988776655432222 222222334444444443332222222 23445677999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHcCCHHHHH
Q 006615 149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE-HLVNLGKLDSAL 227 (638)
Q Consensus 149 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~-~~~~~g~~~~A~ 227 (638)
..|++++|+.+++.+.+.. +-.+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+-+. ..-..|++++|.
T Consensus 128 erg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhH
Confidence 9999999999999999875 34688999999999999999999999999888 5677666554443 344579999999
Q ss_pred HHHHhcccCCCccC-HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCc
Q 006615 228 EVFSALPLMRIKRT-SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDK 306 (638)
Q Consensus 228 ~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 306 (638)
..|.+..+. .|. .+.|+.|...+-..|+...|+.-|++..+.+..--..++++-..|...+.+++|..-+.+.....
T Consensus 205 ~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 205 ACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 999887764 344 57799999999999999999999999987665555567799999999999999998877653221
Q ss_pred cccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCCh
Q 006615 307 RIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSP 386 (638)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (638)
....+. .--++..+-+.|..
T Consensus 283 pn~A~a------------------------------------------------------------~gNla~iYyeqG~l 302 (966)
T KOG4626|consen 283 PNHAVA------------------------------------------------------------HGNLACIYYEQGLL 302 (966)
T ss_pred Ccchhh------------------------------------------------------------ccceEEEEeccccH
Confidence 110000 00012223446888
Q ss_pred hHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHh
Q 006615 387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD 466 (638)
Q Consensus 387 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 466 (638)
+-|++.|+.......- =...|+.|..++-..|++.+|.+.+.+....... .....+.|...|...|.+++|..+|..
T Consensus 303 dlAI~~Ykral~~~P~--F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~ 379 (966)
T KOG4626|consen 303 DLAIDTYKRALELQPN--FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLK 379 (966)
T ss_pred HHHHHHHHHHHhcCCC--chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 8888888887644322 2346888888888889999999888887765433 456777888888888999999988888
Q ss_pred chhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcc-hhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615 467 DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD-VQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545 (638)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~ 545 (638)
..+. .|.....+|.|...|-+.|++++|+..+++.+. ++|+ ...|+.+-..|-..|+++.|.+.+.+.+..
T Consensus 380 al~v-----~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~- 451 (966)
T KOG4626|consen 380 ALEV-----FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI- 451 (966)
T ss_pred HHhh-----ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc-
Confidence 7754 555567888888888889999999998888876 5676 457888888888888888888888887763
Q ss_pred CCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCcccc--------cceeee
Q 006615 546 VEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALR--------GHIWAV 617 (638)
Q Consensus 546 ~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------~~~w~~ 617 (638)
.|. =...++.|...|-..|++.+|+.-++...+.+++.|..-- .+-|.-
T Consensus 452 -nPt----------------------~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 452 -NPT----------------------FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred -CcH----------------------HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 222 1445677888888888888888888888877765554321 123655
Q ss_pred eccccchhcccccc
Q 006615 618 SSADLTRVHSIYRN 631 (638)
Q Consensus 618 ~~~~~~~~~~~~~~ 631 (638)
.++-+.|..+|-|.
T Consensus 509 ~d~~~~kl~sivrd 522 (966)
T KOG4626|consen 509 YDKRMKKLVSIVRD 522 (966)
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555555443
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.84 E-value=1.2e-15 Score=174.90 Aligned_cols=488 Identities=10% Similarity=-0.019 Sum_probs=302.2
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHcCCCCCCChh--------------HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc
Q 006615 71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQS--------------TLHALATVLAKSQRNHELKTLIGDISSSKFLNV 136 (638)
Q Consensus 71 ~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~--------------~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~ 136 (638)
.....+.+.|+.++|.+.++.+.+..+-.+... ........+.+.|++++|...|+.+.+.. +|+
T Consensus 67 ~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~ 145 (1157)
T PRK11447 67 ARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPE 145 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCC
Confidence 356777899999999999999886532222211 11233446788899999999999988754 333
Q ss_pred hHh-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC------------
Q 006615 137 SVN-FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA------------ 203 (638)
Q Consensus 137 ~~~-~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------------ 203 (638)
... ...+.......|+.++|...++++.+.. +-+...+..+...+...|+.++|++.|+++.+...
T Consensus 146 ~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~ 224 (1157)
T PRK11447 146 LDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQ 224 (1157)
T ss_pred hHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHH
Confidence 221 1111122234589999999999999875 45677788888999999999999999998755311
Q ss_pred ------C--------------CCHHHH---------------------HHHHHHHHHcCCHHHHHHHHHhcccCCCccCH
Q 006615 204 ------I--------------PNSRTY---------------------TVMIEHLVNLGKLDSALEVFSALPLMRIKRTS 242 (638)
Q Consensus 204 ------~--------------p~~~ty---------------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 242 (638)
. |+...+ ......+...|++++|...|++..+.. +.+.
T Consensus 225 l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~ 303 (1157)
T PRK11447 225 IKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDS 303 (1157)
T ss_pred HhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 0 110000 011234556788888888888877642 2267
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH--HH--------H----HHHHHHHHcCChHHHHHHHHHhCcCccc
Q 006615 243 KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR--AM--------R----VALERMQEMGFIQGANEFLREMLPDKRI 308 (638)
Q Consensus 243 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~~--------~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 308 (638)
..+..|...+.+.|++++|+..|++..+....... .+ + .....+.+.|++++|...+++.......
T Consensus 304 ~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~ 383 (1157)
T PRK11447 304 EALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT 383 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 77888888888889999999988888765433221 11 1 1134567888888888888877532110
Q ss_pred cccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhH
Q 006615 309 KNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPET 388 (638)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (638)
.......++.++...|++++
T Consensus 384 ------------------------------------------------------------~~~a~~~Lg~~~~~~g~~~e 403 (1157)
T PRK11447 384 ------------------------------------------------------------DSYAVLGLGDVAMARKDYAA 403 (1157)
T ss_pred ------------------------------------------------------------CHHHHHHHHHHHHHCCCHHH
Confidence 01111223333444444444
Q ss_pred HHHHHHHHhcCCCCcCC----------------------------------------HHHHHHHHHHHHhcCChHHHHHH
Q 006615 389 AWHFFCWVAYQPGYTHD----------------------------------------VYALEKMLTILARHGHVELVDRL 428 (638)
Q Consensus 389 a~~~~~~~~~~~~~~p~----------------------------------------~~~~~~li~~~~~~g~~~~a~~l 428 (638)
|.+.|+.......-.+. ...+..+...+...|++++|.+.
T Consensus 404 A~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~ 483 (1157)
T PRK11447 404 AERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAEL 483 (1157)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 44444443322110000 01122334445567778888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHH------------------------
Q 006615 429 IAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS------------------------ 484 (638)
Q Consensus 429 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 484 (638)
|++..+.... +...+..+...|.+.|++++|...++++.+..+.. + ..+.
T Consensus 484 ~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~--~---~~~~a~al~l~~~~~~~~Al~~l~~l~~ 557 (1157)
T PRK11447 484 QRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND--P---EQVYAYGLYLSGSDRDRAALAHLNTLPR 557 (1157)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--H---HHHHHHHHHHHhCCCHHHHHHHHHhCCc
Confidence 8877765533 45566667777788888888888887765532211 1 1111
Q ss_pred --------------------HHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615 485 --------------------SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544 (638)
Q Consensus 485 --------------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 544 (638)
.+...+...|+.++|.++++. .+++...+..+...+.+.|++++|++.|++..+.
T Consensus 558 ~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~ 632 (1157)
T PRK11447 558 AQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR 632 (1157)
T ss_pred hhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 223345556666666666551 1334556677788888999999999999998875
Q ss_pred CCCCCHhhHHHHHHHHHHH----------hhhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCccc-cc
Q 006615 545 GVEPDAYMFKVLIQAYCKY----------LSNSNLMPD-AATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLAL-RG 612 (638)
Q Consensus 545 ~~~p~~~~~~~li~~~~~~----------m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~ 612 (638)
. ..+...+..+...|... -.-....|+ ...+..+..++...|++++|.++++++.+.....|... +.
T Consensus 633 ~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a 711 (1157)
T PRK11447 633 E-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESA 711 (1157)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhH
Confidence 3 23456666666666554 111234454 55667788888899999999999999888654322211 11
Q ss_pred ce------eeeeccccchhcccccccc
Q 006615 613 HI------WAVSSADLTRVHSIYRNSI 633 (638)
Q Consensus 613 ~~------w~~~~~~~~~~~~~~~~~~ 633 (638)
.. +-...++..++...|+.+.
T Consensus 712 ~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 712 LVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 1235678888888888775
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.84 E-value=6e-16 Score=177.31 Aligned_cols=430 Identities=11% Similarity=0.019 Sum_probs=314.6
Q ss_pred HHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-chHhHH----------
Q 006615 73 THALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLN-VSVNFM---------- 141 (638)
Q Consensus 73 ~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~-~~~~~~---------- 141 (638)
...+...|++++|+..|+...+.. +.+...+..+..++.+.|++++|...|++..+..... ....+.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 345667899999999999988653 2356688889999999999999999999988644221 111121
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 006615 142 --NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLV 218 (638)
Q Consensus 142 --~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~ 218 (638)
.+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|.+.|++..+. .| +...+..+...|.
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 22456778999999999999999875 456778888899999999999999999999885 34 4556666666664
Q ss_pred HcCCHHHHHHHHHhcccCCCc--------cCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 006615 219 NLGKLDSALEVFSALPLMRIK--------RTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMG 290 (638)
Q Consensus 219 ~~g~~~~A~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g 290 (638)
.++.++|..+++.+....-. .....+..+...+...|++++|.+.|++..+.........+.+...+.+.|
T Consensus 431 -~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 -QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred -hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 56789999998876532100 012345567788889999999999999998764332233457788899999
Q ss_pred ChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcc
Q 006615 291 FIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFV 370 (638)
Q Consensus 291 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (638)
++++|...++++....... .
T Consensus 510 ~~~~A~~~l~~al~~~P~~------------------------------------------------------------~ 529 (1157)
T PRK11447 510 QRSQADALMRRLAQQKPND------------------------------------------------------------P 529 (1157)
T ss_pred CHHHHHHHHHHHHHcCCCC------------------------------------------------------------H
Confidence 9999999999874321100 0
Q ss_pred cchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHH---------HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 006615 371 WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY---------ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPF 441 (638)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~---------~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~ 441 (638)
......+..+...++.++|+..+..+... ...++.. .+..+...+...|+.++|.++++. .+.+.
T Consensus 530 ~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~ 603 (1157)
T PRK11447 530 EQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPST 603 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCc
Confidence 00112334455678888888888765321 1122211 123456678889999999999872 23355
Q ss_pred HHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcc-hhhHHH
Q 006615 442 STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD-VQTFSG 520 (638)
Q Consensus 442 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ 520 (638)
..+..+...+.+.|++++|...|+...+. .|+....+..+...|...|+.++|++.++...+. .|+ ..++..
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~-----~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~ 676 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLTR-----EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRR 676 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHH
Confidence 66777888999999999999999998875 4444578999999999999999999999988764 444 455667
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHH
Q 006615 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMP---DAATKELLKKSLWKEGRRKEAAAVEE 597 (638)
Q Consensus 521 li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~ 597 (638)
+..++...|++++|.++++.+.... |+. .| +...+..+...+...|++++|.+.++
T Consensus 677 la~~~~~~g~~~eA~~~~~~al~~~--~~~-------------------~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~ 735 (1157)
T PRK11447 677 VALAWAALGDTAAAQRTFNRLIPQA--KSQ-------------------PPSMESALVLRDAARFEAQTGQPQQALETYK 735 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhhC--ccC-------------------CcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7788899999999999999988642 211 11 23455667788889999999999999
Q ss_pred HHHHc
Q 006615 598 RCEKI 602 (638)
Q Consensus 598 ~~~~~ 602 (638)
+....
T Consensus 736 ~Al~~ 740 (1157)
T PRK11447 736 DAMVA 740 (1157)
T ss_pred HHHhh
Confidence 98753
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.81 E-value=3.9e-16 Score=151.74 Aligned_cols=395 Identities=15% Similarity=0.118 Sum_probs=309.8
Q ss_pred HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG 151 (638)
Q Consensus 72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g 151 (638)
+...+....+++.....-....+.. +--..+|..+...+...|++.+|..+++.+.+.. +.....|..+..++...|
T Consensus 88 l~ai~~q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~ 164 (966)
T KOG4626|consen 88 LSAIFFQGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQG 164 (966)
T ss_pred ehhhhhcccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcC
Confidence 3445556666666555444333322 2234588889999999999999999999988753 345667888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHhHHHHH-HHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 006615 152 DLELVLSTWNEYRQRAKLLSTESYNIVM-SVYAKTGKNFEAVETFRQVIDEGAIPN-SRTYTVMIEHLVNLGKLDSALEV 229 (638)
Q Consensus 152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~ 229 (638)
+.+.|.+.|.+..+.+ |+.....+-+ ..+-..|++++|...|.+..+. .|. ...|+.|-..+-..|+.-.|.+-
T Consensus 165 ~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~ 240 (966)
T KOG4626|consen 165 DLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQH 240 (966)
T ss_pred CCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHH
Confidence 9999999999988865 6666554444 4444579999999999888874 343 56778888888889999999999
Q ss_pred HHhcccCCCccC-HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH-H-HHHHHHHHcCChHHHHHHHHHhCcCc
Q 006615 230 FSALPLMRIKRT-SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-R-VALERMQEMGFIQGANEFLREMLPDK 306 (638)
Q Consensus 230 ~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~-~-~ll~~~~~~g~~~~a~~~~~~~~~~~ 306 (638)
|++..+. .|+ ...|-.|-..|...+.+++|...|.+... ..|+... + ++...|...|.++-|++.+++....
T Consensus 241 y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~- 315 (966)
T KOG4626|consen 241 YEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL- 315 (966)
T ss_pred HHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhc-
Confidence 9988764 455 46788899999999999999999988765 4565543 3 6667788899999999999876432
Q ss_pred cccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCCh
Q 006615 307 RIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSP 386 (638)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (638)
.+++.....-++.++...|+.
T Consensus 316 -----------------------------------------------------------~P~F~~Ay~NlanALkd~G~V 336 (966)
T KOG4626|consen 316 -----------------------------------------------------------QPNFPDAYNNLANALKDKGSV 336 (966)
T ss_pred -----------------------------------------------------------CCCchHHHhHHHHHHHhccch
Confidence 223333445577888888999
Q ss_pred hHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHh
Q 006615 387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD 466 (638)
Q Consensus 387 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 466 (638)
.+|.+.|.....-.. ......+.|-..+...|.+++|..+|....+-... -...++.|...|-..|++++|+..|++
T Consensus 337 ~ea~~cYnkaL~l~p--~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Yke 413 (966)
T KOG4626|consen 337 TEAVDCYNKALRLCP--NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKE 413 (966)
T ss_pred HHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHH
Confidence 999999998765443 23456788999999999999999999988764322 236788899999999999999999999
Q ss_pred chhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcc-hhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615 467 DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD-VQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545 (638)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~ 545 (638)
..+. +|+.+.+|+.+...|...|+.+.|.+.+.+.+.. .|. ...++.|...|-..|++.+|+.-+++..+
T Consensus 414 alrI-----~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk-- 484 (966)
T KOG4626|consen 414 ALRI-----KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK-- 484 (966)
T ss_pred HHhc-----CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--
Confidence 8764 7888899999999999999999999999999874 565 56789999999999999999999999886
Q ss_pred CCCC
Q 006615 546 VEPD 549 (638)
Q Consensus 546 ~~p~ 549 (638)
++||
T Consensus 485 lkPD 488 (966)
T KOG4626|consen 485 LKPD 488 (966)
T ss_pred cCCC
Confidence 5677
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=1e-15 Score=163.87 Aligned_cols=331 Identities=12% Similarity=0.037 Sum_probs=242.1
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhc
Q 006615 71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS 150 (638)
Q Consensus 71 ~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~ 150 (638)
.++..+.+.|+++.|+.+++.......-. ...+..++.++...|+++.|...++++.+.. +.+...+..+...+.+.
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~--~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNG--RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCc--hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 36777889999999999999888654222 3356666677778999999999999998753 34556678888999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006615 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230 (638)
Q Consensus 151 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~ 230 (638)
|++++|...+++..... +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 99999999999998864 445778888999999999999999999988765322 23333333 3478899999999999
Q ss_pred HhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHH----HHHHHHHhCcCc
Q 006615 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQG----ANEFLREMLPDK 306 (638)
Q Consensus 231 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~ 306 (638)
+.+.+..-.++...+..+...+.+.|++++|...+++............+.+...+...|++++ |...++.....
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l- 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF- 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-
Confidence 9877643223444556667888999999999999999987653333334467777888888875 56666655311
Q ss_pred cccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCCh
Q 006615 307 RIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSP 386 (638)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (638)
T Consensus 280 -------------------------------------------------------------------------------- 279 (656)
T PRK15174 280 -------------------------------------------------------------------------------- 279 (656)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHh
Q 006615 387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD 466 (638)
Q Consensus 387 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 466 (638)
. +.+...+..+...+.+.|++++|...+++....... +...+..+..+|.+.|++++|...|+.
T Consensus 280 -------------~--P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 280 -------------N--SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred -------------C--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 0 224556777777888888888888888887765433 445666677778888888888888877
Q ss_pred chhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 006615 467 DRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS 509 (638)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 509 (638)
+... .|+....+..+..++...|+.++|.+.|++..+.
T Consensus 344 al~~-----~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 344 LARE-----KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHh-----CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 7654 2332233444556677888888888888887764
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=3.7e-15 Score=160.21 Aligned_cols=258 Identities=12% Similarity=-0.025 Sum_probs=184.5
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCCHHH--HHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCC
Q 006615 255 VERFDEAKSLLNEMRDDG-KFPGRAM--RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSG 331 (638)
Q Consensus 255 ~g~~~~A~~l~~~m~~~g-~~p~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (638)
.+++++|.+.|++....+ ..|+... +.+...+...|++++|...++......
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~------------------------- 361 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD------------------------- 361 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------------------
Confidence 467888888888887764 3444432 244566678888999988888764321
Q ss_pred ccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHH
Q 006615 332 VRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEK 411 (638)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 411 (638)
+.........+..+...|++++|...|+...... +.+...|..
T Consensus 362 -----------------------------------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~ 404 (615)
T TIGR00990 362 -----------------------------------PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN--SEDPDIYYH 404 (615)
T ss_pred -----------------------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 1111122345566667788888888888775443 335667888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHH
Q 006615 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLT 491 (638)
Q Consensus 412 li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 491 (638)
+...+...|++++|...|++....... +...+..+..++.+.|++++|...|++.... .|+....|+.+...+.
T Consensus 405 lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~P~~~~~~~~lg~~~~ 478 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKN-----FPEAPDVYNYYGELLL 478 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHH
Confidence 888899999999999999998876533 5667777888888999999999999987764 3343467888888999
Q ss_pred ccCChHHHHHHHHHHHhCCCCcchh------hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhh
Q 006615 492 KCKRDFDAINVLEEMIFSGIVPDVQ------TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLS 565 (638)
Q Consensus 492 ~~g~~~~A~~l~~~m~~~g~~p~~~------t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~ 565 (638)
..|++++|++.|++..+..-..+.. .++..+..+...|++++|.+++++..... |+
T Consensus 479 ~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~---------------- 540 (615)
T TIGR00990 479 DQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID--PE---------------- 540 (615)
T ss_pred HccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CC----------------
Confidence 9999999999999987752111111 12222233444689999999998877642 33
Q ss_pred hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615 566 NSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND 604 (638)
Q Consensus 566 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 604 (638)
+...+..+...+.+.|++++|.+.+++..+...
T Consensus 541 ------~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 541 ------CDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred ------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 344678899999999999999999999887654
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=7.9e-15 Score=157.72 Aligned_cols=402 Identities=10% Similarity=-0.053 Sum_probs=271.9
Q ss_pred HHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCC
Q 006615 73 THALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD 152 (638)
Q Consensus 73 ~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 152 (638)
...+.+.|++++|+..|+..... .|+...|..+..++.+.|++++|...++...+.. +.+...|..+..+|...|+
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence 45667889999999999998854 4667788888889999999999999999988753 3455678889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH-------------------------c--CCCC
Q 006615 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID-------------------------E--GAIP 205 (638)
Q Consensus 153 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------------------------~--g~~p 205 (638)
+++|..-|......+-. +......++.-+........+.+.++.-.. . ...|
T Consensus 210 ~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 210 YADALLDLTASCIIDGF-RNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred HHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence 99999888766543211 111111111111110001111111110000 0 0000
Q ss_pred C-HHHHHHHHHH---HHHcCCHHHHHHHHHhcccCC-Ccc-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 006615 206 N-SRTYTVMIEH---LVNLGKLDSALEVFSALPLMR-IKR-TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM 279 (638)
Q Consensus 206 ~-~~ty~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 279 (638)
+ ...+..+... ....+++++|.+.|+...+.+ ..| +...|+.+...+...|++++|+..|++...........+
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~ 368 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSY 368 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 0 0000000000 012367889999999887654 233 456788888888889999999999999877543322334
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHH
Q 006615 280 RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPE 359 (638)
Q Consensus 280 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (638)
+.+...+...|++++|...++.......
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~~p---------------------------------------------------- 396 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLNS---------------------------------------------------- 396 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC----------------------------------------------------
Confidence 4666778889999999999988743210
Q ss_pred HHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006615 360 VVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL 439 (638)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~ 439 (638)
.........+.++...|++++|...|....... +.+...+..+..++.+.|++++|...|+....... -
T Consensus 397 --------~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P-~ 465 (615)
T TIGR00990 397 --------EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP-E 465 (615)
T ss_pred --------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-C
Confidence 001112335666777899999999999886443 33566788888899999999999999999887543 2
Q ss_pred CHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcc--hhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcc-hh
Q 006615 440 PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK--FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD-VQ 516 (638)
Q Consensus 440 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ 516 (638)
+...++.+...+...|++++|...|+...+..+.... .+....++..+..+...|++++|.+++++..+.. |+ ..
T Consensus 466 ~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~~~~ 543 (615)
T TIGR00990 466 APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID--PECDI 543 (615)
T ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcHH
Confidence 5788889999999999999999999998765332111 1111223333444455799999999999988753 44 45
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615 517 TFSGLMYHFALQGDEKIVQKLFSMVRQN 544 (638)
Q Consensus 517 t~~~li~~~~~~g~~~~a~~l~~~m~~~ 544 (638)
.+..+...+...|++++|.+.|++..+.
T Consensus 544 a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 544 AVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7889999999999999999999998765
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=3.3e-15 Score=160.00 Aligned_cols=378 Identities=12% Similarity=0.011 Sum_probs=277.4
Q ss_pred HHcCCChhHHHHHHHHHHcCCCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHH
Q 006615 76 LRSAPNADSALSIMEALKSNPNFS-HNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154 (638)
Q Consensus 76 l~~~~~~~~Al~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 154 (638)
+.+..+++..--.|....++..-. -+....-.++..+.+.|+++.|..+++........ +...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence 334445554444444443221111 12223556777788899999999999988876433 3444556667777899999
Q ss_pred HHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 006615 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSAL 233 (638)
Q Consensus 155 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m 233 (638)
.|...|+++.... +.+...|..+...+.+.|++++|.+.|++..+. .| +...+..+...+...|+.++|...++.+
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 9999999998875 456777888889999999999999999999884 45 4667888889999999999999999877
Q ss_pred ccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHcCChHHHHHHHHHhCcCccccccc
Q 006615 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR-VALERMQEMGFIQGANEFLREMLPDKRIKNVR 312 (638)
Q Consensus 234 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 312 (638)
....- .+...+..+ ..+...|++++|...++.+.+....++.... .+...+...|++++|...++.....
T Consensus 171 ~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~------- 241 (656)
T PRK15174 171 AQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR------- 241 (656)
T ss_pred HHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------
Confidence 65421 223334333 3478889999999999998776543333333 4456777888888888888776321
Q ss_pred cccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHH
Q 006615 313 YYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHF 392 (638)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 392 (638)
T Consensus 242 -------------------------------------------------------------------------------- 241 (656)
T PRK15174 242 -------------------------------------------------------------------------------- 241 (656)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCCCcCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhch
Q 006615 393 FCWVAYQPGYTHDVYALEKMLTILARHGHVEL----VDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR 468 (638)
Q Consensus 393 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 468 (638)
. +.+...+..+...+...|++++ |...|++....... +...+..+...+.+.|++++|...+++..
T Consensus 242 -------~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al 311 (656)
T PRK15174 242 -------G--LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSL 311 (656)
T ss_pred -------C--CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1 2256667788889999999985 89999999876543 66788999999999999999999999988
Q ss_pred hccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhh-HHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 006615 469 TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT-FSGLMYHFALQGDEKIVQKLFSMVRQNGVE 547 (638)
Q Consensus 469 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~li~~~~~~g~~~~a~~l~~~m~~~~~~ 547 (638)
+. .|+....+..+...+.+.|++++|++.|+++.+. .|+... +..+..++...|+.++|...|++..+..-.
T Consensus 312 ~l-----~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 312 AT-----HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred Hh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 75 3444467888899999999999999999999875 466544 344567889999999999999998875322
Q ss_pred CCHhhHHHHHHHHHHH
Q 006615 548 PDAYMFKVLIQAYCKY 563 (638)
Q Consensus 548 p~~~~~~~li~~~~~~ 563 (638)
--...|...+..|.+.
T Consensus 385 ~~~~~~~ea~~~~~~~ 400 (656)
T PRK15174 385 HLPQSFEEGLLALDGQ 400 (656)
T ss_pred hchhhHHHHHHHHHHH
Confidence 1244555566666655
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.78 E-value=1.8e-14 Score=157.74 Aligned_cols=223 Identities=13% Similarity=0.086 Sum_probs=162.6
Q ss_pred HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG 151 (638)
Q Consensus 72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g 151 (638)
.+.+....|+.++|+++|....... ..+...+..+..++...|++++|..++++..+.. +.+...+..+...+...|
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 5677889999999999999987532 3344468889999999999999999999988753 344566778888999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 006615 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVF 230 (638)
Q Consensus 152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~ 230 (638)
++++|...+++..+.. +.+.. +..+..++...|+.++|+..+++..+. .| +...+..+...+...|..+.|.+.+
T Consensus 98 ~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 98 QYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 9999999999998874 45566 888888999999999999999999985 44 4555666777888889999999999
Q ss_pred HhcccCCCccCH------hHHHHHHHHHH-----ccCCH---HHHHHHHHHHHhC-CCCCCHH--HH----HHHHHHHHc
Q 006615 231 SALPLMRIKRTS------KQYLILVEGFV-----GVERF---DEAKSLLNEMRDD-GKFPGRA--MR----VALERMQEM 289 (638)
Q Consensus 231 ~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~A~~l~~~m~~~-g~~p~~~--~~----~ll~~~~~~ 289 (638)
+.... .|+. .....++.... ..+++ ++|++.++.+... ...|+.. .. ..+..+...
T Consensus 174 ~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 174 DDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 87774 3332 11222233222 22334 7788888888754 2333221 11 113445666
Q ss_pred CChHHHHHHHHHhCc
Q 006615 290 GFIQGANEFLREMLP 304 (638)
Q Consensus 290 g~~~~a~~~~~~~~~ 304 (638)
|++++|...|+.+..
T Consensus 251 g~~~eA~~~~~~ll~ 265 (765)
T PRK10049 251 DRYKDVISEYQRLKA 265 (765)
T ss_pred hhHHHHHHHHHHhhc
Confidence 888888888877743
No 20
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=4.1e-15 Score=138.56 Aligned_cols=347 Identities=12% Similarity=0.096 Sum_probs=225.7
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHH
Q 006615 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV 249 (638)
Q Consensus 170 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 249 (638)
-+..+|.+||.++|+--..+.|.++|++-.....+.+..+||.+|.+-.-.. ..+++.+|.+..+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHH
Confidence 3467999999999999999999999999998888889999999998654322 278889999988999999999999
Q ss_pred HHHHccCCHHH----HHHHHHHHHhCCCCCCHHHH-HHHHHHHHcCChHH-HHHHHHHhCcCccccccccccCCCCCccc
Q 006615 250 EGFVGVERFDE----AKSLLNEMRDDGKFPGRAMR-VALERMQEMGFIQG-ANEFLREMLPDKRIKNVRYYEDGSDDDED 323 (638)
Q Consensus 250 ~~~~~~g~~~~----A~~l~~~m~~~g~~p~~~~~-~ll~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (638)
++.++.|+++. |.+++.+|++-|+.|...+| .+|..+++.++..+ +..++.+++.+-.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~lt---------------- 344 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLT---------------- 344 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhc----------------
Confidence 99999998765 56788999999999999887 66777777766544 3444444421100
Q ss_pred cccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCc
Q 006615 324 ENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYT 403 (638)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 403 (638)
|+ .-+..-+
T Consensus 345 ------------------------------------------------------------GK-----------~fkp~~p 353 (625)
T KOG4422|consen 345 ------------------------------------------------------------GK-----------TFKPITP 353 (625)
T ss_pred ------------------------------------------------------------cC-----------cccCCCC
Confidence 00 0011112
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcc
Q 006615 404 HDVYALEKMLTILARHGHVELVDRLIAKLRSDG----MRLP---FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK 476 (638)
Q Consensus 404 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 476 (638)
.|...|..-+..|.+..+.+.|..+..-+.... +.|+ ..-|..+..+.|.....+.-...|+.|... ..-
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~---~y~ 430 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS---AYF 430 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---eec
Confidence 355678888899999999999988877665321 2222 123445555566666666666666665432 222
Q ss_pred hhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHh---hH
Q 006615 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAY---MF 553 (638)
Q Consensus 477 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~---~~ 553 (638)
|+. .+...++.+.--.|+++-.-+++.+|+..|..-+. +-..+++..|.+....|+.. -+
T Consensus 431 p~~-~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~----------------~l~eeil~~L~~~k~hp~tp~r~Ql 493 (625)
T KOG4422|consen 431 PHS-QTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS----------------DLREEILMLLARDKLHPLTPEREQL 493 (625)
T ss_pred CCc-hhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH----------------HHHHHHHHHHhcCCCCCCChHHHHH
Confidence 221 34455556666666666666666666665432221 11223333333333333322 22
Q ss_pred HHHHHHHHHH-----------hhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCcccccceeee-----
Q 006615 554 KVLIQAYCKY-----------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAV----- 617 (638)
Q Consensus 554 ~~li~~~~~~-----------m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~w~~----- 617 (638)
.....-|+-. |.+..+.| ...+...-.+.|.|+.++|.+++..+...+.+.|..|..++...
T Consensus 494 ~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a 571 (625)
T KOG4422|consen 494 QVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSA 571 (625)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHH
Confidence 2222222221 44444444 45677778889999999999999999888888888887775322
Q ss_pred -eccccchhcccc
Q 006615 618 -SSADLTRVHSIY 629 (638)
Q Consensus 618 -~~~~~~~~~~~~ 629 (638)
.+++...|+..+
T Consensus 572 ~~~~spsqA~~~l 584 (625)
T KOG4422|consen 572 KVSNSPSQAIEVL 584 (625)
T ss_pred HhcCCHHHHHHHH
Confidence 455555554433
No 21
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=2.8e-14 Score=133.15 Aligned_cols=412 Identities=11% Similarity=0.119 Sum_probs=282.8
Q ss_pred HHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCC--hHHH-HHHHHHHHhCC------------------
Q 006615 74 HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR--NHEL-KTLIGDISSSK------------------ 132 (638)
Q Consensus 74 ~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a-~~l~~~~~~~~------------------ 132 (638)
.-+...|.+..+.-+|+.|.+. +...+...-..+++..+-.+. +.-+ ++.|-.|.+.|
T Consensus 123 ~kmIS~~EvKDs~ilY~~m~~e-~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E 201 (625)
T KOG4422|consen 123 LKMISSREVKDSCILYERMRSE-NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFE 201 (625)
T ss_pred HHHHhhcccchhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHh
Confidence 3456789999999999999977 455566566666665443222 1111 22222232211
Q ss_pred -CCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 006615 133 -FLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT 211 (638)
Q Consensus 133 -~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~ 211 (638)
.+.+..++..+|.+.|+.-..+.|.+++++-.....+.+..+||.+|.+-.-. ...+++.+|....+.||..|||
T Consensus 202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHH
Confidence 24456789999999999999999999999999888899999999999874332 2278999999999999999999
Q ss_pred HHHHHHHHcCCHHH----HHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHH-HHHHHHHHH----hCCCC---CCH-H
Q 006615 212 VMIEHLVNLGKLDS----ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE-AKSLLNEMR----DDGKF---PGR-A 278 (638)
Q Consensus 212 ~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~----~~g~~---p~~-~ 278 (638)
+++++..+.|+++. |.+++.+|++.|++|...+|..+|.-+++.++..+ |..++.++. ...+. |+. .
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 99999999998765 46788899999999999999999999999888744 444444443 23333 333 3
Q ss_pred HH-HHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCC
Q 006615 279 MR-VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWS 357 (638)
Q Consensus 279 ~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (638)
++ +.+..|....+.+-|.++..-+.....- ..+.
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~---------------------------------------------~~ig 392 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNW---------------------------------------------KFIG 392 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCch---------------------------------------------hhcC
Confidence 34 7788888888988888877655322110 0000
Q ss_pred HHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 006615 358 PEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM 437 (638)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 437 (638)
++... ...+.-+..+++...+.+.-..+|+.+ ..+-+-|+..+...++++..-.|.++-..+++.+++..|.
T Consensus 393 ~~~~~-------~fYyr~~~~licq~es~~~~~~~Y~~l-VP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 393 PDQHR-------NFYYRKFFDLICQMESIDVTLKWYEDL-VPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred hHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 00000 011222344555567778888888887 5667788999999999999999999999999999999887
Q ss_pred CCCHHHHHHHHHHHcccC-C---H-----HH-----HHHHHHhchh---ccCCCcchhHHHHHHHHHHHHHccCChHHHH
Q 006615 438 RLPFSTIRLIIDFYGISK-K---A-----DA-----ALKAFHDDRT---LCGPISKFKLMLLYSSLLRTLTKCKRDFDAI 500 (638)
Q Consensus 438 ~~~~~~~~~li~~~~~~g-~---~-----~~-----A~~~~~~~~~---~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 500 (638)
..+...---++...++.. + . .. |..+++.... .......| ....+.+.-.+.+.|+.++|.
T Consensus 465 t~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~ 542 (625)
T KOG4422|consen 465 TFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAW 542 (625)
T ss_pred hhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHH
Confidence 666655555555555443 1 1 11 1111111000 00011122 245677777889999999999
Q ss_pred HHHHHHHhCCC----CcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615 501 NVLEEMIFSGI----VPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545 (638)
Q Consensus 501 ~l~~~m~~~g~----~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~ 545 (638)
++|.-..+.|- .|......-++.+-....+...|...++-|...+
T Consensus 543 e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 543 EMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 99998866542 2334444466777778888899999998887654
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=2e-13 Score=146.67 Aligned_cols=447 Identities=10% Similarity=0.013 Sum_probs=305.4
Q ss_pred HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG 151 (638)
Q Consensus 72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g 151 (638)
-.-...+.|+++.|+..|+.+.+.....+ ...+ .++..+...|+.++|...+++.... ..........+...|...|
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~-~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQS-GQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccch-hhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcC
Confidence 34456789999999999999986542221 1233 8888888999999999999998821 1222333334466888889
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006615 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231 (638)
Q Consensus 152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~ 231 (638)
++++|.++|+++.+.. +-+...+..++..+...++.++|++.++++... .|+...+-.++..+...++..+|.+.++
T Consensus 117 dyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 117 RWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 9999999999999875 445677778888899999999999999999884 5676666555444445666766999999
Q ss_pred hcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHH--HHHHHHHH---------cCChHHHHHHH
Q 006615 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMR--VALERMQE---------MGFIQGANEFL 299 (638)
Q Consensus 232 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~--~ll~~~~~---------~g~~~~a~~~~ 299 (638)
++.+.. +-+...+..++.++.+.|-...|.++..+-... +.+.. ... ..+....+ ..++..+.+.+
T Consensus 194 kll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 194 EAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 998763 235677788999999999999999877653211 11111 110 01111111 11222222222
Q ss_pred HHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchH--HHH
Q 006615 300 REMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTR--LVC 377 (638)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 377 (638)
.++.. .+..+. ...+....+... --.
T Consensus 272 a~~~~-----------------------------------------------l~~~~~-----~~p~~~~~~~~~~~Drl 299 (822)
T PRK14574 272 ADYQN-----------------------------------------------LLTRWG-----KDPEAQADYQRARIDRL 299 (822)
T ss_pred HHHHH-----------------------------------------------HHhhcc-----CCCccchHHHHHHHHHH
Confidence 22210 000000 000000000000 112
Q ss_pred HHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHc
Q 006615 378 KVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG-----MRLPFSTIRLIIDFYG 452 (638)
Q Consensus 378 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-----~~~~~~~~~~li~~~~ 452 (638)
.++...+++.++++.|+.+. ..+.+.-..+-..+.++|...+++++|..+++.+.... ..++......|.-+|.
T Consensus 300 ~aL~~r~r~~~vi~~y~~l~-~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l 378 (822)
T PRK14574 300 GALLVRHQTADLIKEYEAME-AEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN 378 (822)
T ss_pred HHHHHhhhHHHHHHHHHHhh-hcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence 34556788999999999884 44433334467788999999999999999999987643 1234444678899999
Q ss_pred ccCCHHHHHHHHHhchhccC----------CCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHH
Q 006615 453 ISKKADAALKAFHDDRTLCG----------PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522 (638)
Q Consensus 453 ~~g~~~~A~~~~~~~~~~~~----------~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 522 (638)
..+++++|..+++.+.+..+ ..+.|+-...+..++..+.-.|+..+|++.++++.... +-|......+.
T Consensus 379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A 457 (822)
T PRK14574 379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALA 457 (822)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 99999999999999887433 24566655666777888999999999999999997753 34778888889
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 006615 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKI 602 (638)
Q Consensus 523 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (638)
..+...|.+.+|++.++..... .|+ +..+......++...|+|.+|.++.+...+.
T Consensus 458 ~v~~~Rg~p~~A~~~~k~a~~l--~P~----------------------~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 458 SIYLARDLPRKAEQELKAVESL--APR----------------------SLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHhcCCHHHHHHHHHHHhhh--CCc----------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 9999999999999999777754 444 3344455666666778888888777776665
Q ss_pred cC
Q 006615 603 ND 604 (638)
Q Consensus 603 ~~ 604 (638)
.+
T Consensus 514 ~P 515 (822)
T PRK14574 514 SP 515 (822)
T ss_pred CC
Confidence 54
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.72 E-value=5.7e-13 Score=146.18 Aligned_cols=210 Identities=11% Similarity=0.043 Sum_probs=154.2
Q ss_pred cCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHH
Q 006615 78 SAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVL 157 (638)
Q Consensus 78 ~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 157 (638)
..|++++|+..|+.+.+..+ -+..++..+..++...|+.++|+...++..+.. |+...|..++..+ ++.++|.
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP--~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVP--DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHH
Confidence 44999999999999986642 235678999999999999999999999998864 4444344434322 9999999
Q ss_pred HHHHHHHhcCCCCCHHhHHHHHHH--------HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHcCCHHHHHH
Q 006615 158 STWNEYRQRAKLLSTESYNIVMSV--------YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM-IEHLVNLGKLDSALE 228 (638)
Q Consensus 158 ~l~~~m~~~~~~p~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~l-i~~~~~~g~~~~A~~ 228 (638)
.+++++.... +-+..++..+... |.+. +.|.+.++ .......|+..+.... .+.|.+.|++++|.+
T Consensus 129 ~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 129 TTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 9999999875 3345566555555 5555 55555555 3333344456655655 899999999999999
Q ss_pred HHHhcccCCCccCHhHHHHHHHHHHc-cCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHcCChHHHHHHHHHhCcC
Q 006615 229 VFSALPLMRIKRTSKQYLILVEGFVG-VERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPD 305 (638)
Q Consensus 229 ~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~ 305 (638)
++.++.+.+. .+..-...|-.+|.. .++ +++..+++. .+.-+... ..+...+.+.|+.++|.++++++.+.
T Consensus 204 lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~ 276 (987)
T PRK09782 204 LYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPL 276 (987)
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccc
Confidence 9999998763 345556777778887 466 888887553 23334444 47788999999999999999998654
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.72 E-value=1.5e-12 Score=142.93 Aligned_cols=529 Identities=11% Similarity=0.011 Sum_probs=312.4
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHH---
Q 006615 70 FIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQW--- 146 (638)
Q Consensus 70 ~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~--- 146 (638)
+.+...|...|++++|+..+++..+.. |+...|..++..+ ++.++|..+++++.+.. +.+..++..+...
T Consensus 82 ~~LA~~yl~~g~~~~A~~~~~kAv~ld---P~n~~~~~~La~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~ 154 (987)
T PRK09782 82 LYLAEAYRHFGHDDRARLLLEDQLKRH---PGDARLERSLAAI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVG 154 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC---cccHHHHHHHHHh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhc
Confidence 458889999999999999999998653 4444555544333 88899999999998764 2334445445554
Q ss_pred -----HHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-
Q 006615 147 -----YSTSGDLELVLSTWNEYRQRAKLLSTESYNIV-MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN- 219 (638)
Q Consensus 147 -----~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~- 219 (638)
|.+. ++|.+.++ .......|+..+.... ...|.+.|++++|++++.++.+.+.. +..-...|-..|..
T Consensus 155 ~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~ 229 (987)
T PRK09782 155 QNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAG 229 (987)
T ss_pred cchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHh
Confidence 5555 55555555 3333333345444444 88999999999999999999997543 45556666677777
Q ss_pred cCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CCHHH-------------------
Q 006615 220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF-PGRAM------------------- 279 (638)
Q Consensus 220 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~~------------------- 279 (638)
.++ +++..+++. .++-|...+..+...|.+.|+.++|.++++++...... |....
T Consensus 230 l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~ 304 (987)
T PRK09782 230 QLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANY 304 (987)
T ss_pred hCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccch
Confidence 466 788777553 23457888899999999999999999998887543222 11110
Q ss_pred ------------HHHHHHHHHcCChHHHHHHHHHhCcCccccccccccC--------------------C----------
Q 006615 280 ------------RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYED--------------------G---------- 317 (638)
Q Consensus 280 ------------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--------------------~---------- 317 (638)
...+.-+.+.+.++.+.++.. ..+........+... .
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~ 383 (987)
T PRK09782 305 TVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLT 383 (987)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 011233444555554444422 111100000000000 0
Q ss_pred ------CC--CccccccCCCC-C--cc-----c----cccccccCCCChhhHHH------------Hhh---cCC---HH
Q 006615 318 ------SD--DDEDENDDNNS-G--VR-----I----AYGVQLKPWLDPKALAN------------TLD---EWS---PE 359 (638)
Q Consensus 318 ------~~--~~~~~~~~~~~-~--~~-----~----~~~~~~~~~~~~~~~~~------------~~~---~~~---~~ 359 (638)
+. .++.-.+.... . .. + ................. ... ... ..
T Consensus 384 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (987)
T PRK09782 384 WQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPA 463 (987)
T ss_pred HHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHH
Confidence 00 00000000000 0 00 0 00000000000000000 000 000 11
Q ss_pred HHHHhhc-CC--cccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006615 360 VVSLLAD-AK--FVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436 (638)
Q Consensus 360 ~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 436 (638)
....+.. +. .......++..+.. +..++|...+...... .|+......+...+...|++++|...|+++...
T Consensus 464 ~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~- 538 (987)
T PRK09782 464 IVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR---QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH- 538 (987)
T ss_pred HHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence 1111111 11 11222334444444 7888888877766533 355544444455556899999999999987554
Q ss_pred CCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchh
Q 006615 437 MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516 (638)
Q Consensus 437 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 516 (638)
.|+...+..+..++.+.|+.++|...++...+.. |+....+..+...+.+.|++++|.+.+++..+. .|+..
T Consensus 539 -~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-----P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~ 610 (987)
T PRK09782 539 -DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-----LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSAN 610 (987)
T ss_pred -CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHH
Confidence 3344455666777888999999999998887652 222233444444555669999999999998875 57778
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhh-HHHHHHHHHHH----------hhhCCCCCC-HHHHHHHHHHHh
Q 006615 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYM-FKVLIQAYCKY----------LSNSNLMPD-AATKELLKKSLW 584 (638)
Q Consensus 517 t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~-~~~li~~~~~~----------m~~~g~~p~-~~~~~~li~~~~ 584 (638)
.|..+...+.+.|++++|...+++.... .|+... ++.+-..+... -......|+ ...+..+..++.
T Consensus 611 a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~ 688 (987)
T PRK09782 611 AYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ 688 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8888889999999999999999998875 465443 33333334333 112234564 667889999999
Q ss_pred ccCcHHHHHHHHHHHHHccCCCCcccccceeee-eccccchhcccccc
Q 006615 585 KEGRRKEAAAVEERCEKINDVPSLALRGHIWAV-SSADLTRVHSIYRN 631 (638)
Q Consensus 585 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~ 631 (638)
..|++++|+..+++..+..+......+...|.. ...+..++.+.|++
T Consensus 689 ~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 689 RLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998765544444444444 22335555555444
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.70 E-value=5.4e-13 Score=146.27 Aligned_cols=417 Identities=8% Similarity=-0.022 Sum_probs=301.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 006615 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS 180 (638)
Q Consensus 101 ~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~ 180 (638)
++....-.+.+....|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++..+.. +.+...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34456677888889999999999999987622 4455568899999999999999999999988764 455777888889
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCcc-CHhHHHHHHHHHHccCCH
Q 006615 181 VYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR-TSKQYLILVEGFVGVERF 258 (638)
Q Consensus 181 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~ 258 (638)
.+.+.|++++|...+++..+. .| +.. +..+...+...|+.++|...++++.+. .| +...+..+...+...|..
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCh
Confidence 999999999999999999886 34 455 888888999999999999999999875 34 455667788888899999
Q ss_pred HHHHHHHHHHHhCCCCCCH-------HHHHHHHHH-----HHcCCh---HHHHHHHHHhCcC-ccccccccccCCCCCcc
Q 006615 259 DEAKSLLNEMRDDGKFPGR-------AMRVALERM-----QEMGFI---QGANEFLREMLPD-KRIKNVRYYEDGSDDDE 322 (638)
Q Consensus 259 ~~A~~l~~~m~~~g~~p~~-------~~~~ll~~~-----~~~g~~---~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 322 (638)
++|++.+++... .|+. .....+... ...+++ ++|.+.++.+... ...|...
T Consensus 167 e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~---------- 233 (765)
T PRK10049 167 APALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDAT---------- 233 (765)
T ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccc----------
Confidence 999999987654 3332 111122211 112233 5566666665421 0000000
Q ss_pred ccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHH-HHHHHhccCChhHHHHHHHHHhcCCC
Q 006615 323 DENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRL-VCKVLRHFKSPETAWHFFCWVAYQPG 401 (638)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~ 401 (638)
+ ........ ++ .+...+++++|...|+.+.....
T Consensus 234 -----------------------------------~---------~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~ 268 (765)
T PRK10049 234 -----------------------------------A---------DYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQ 268 (765)
T ss_pred -----------------------------------h---------HHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCC
Confidence 0 00000000 22 23456899999999999865533
Q ss_pred CcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHcccCCHHHHHHHHHhchhccCC-----
Q 006615 402 YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL---PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGP----- 473 (638)
Q Consensus 402 ~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----- 473 (638)
-.|+... ..+..+|...|++++|..+|+.+....... .......+..++...|++++|..+++.+....+.
T Consensus 269 ~~P~~a~-~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~ 347 (765)
T PRK10049 269 IIPPWAQ-RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLY 347 (765)
T ss_pred CCCHHHH-HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeec
Confidence 2243322 224678999999999999999987654321 1345667777889999999999999998876421
Q ss_pred ---Ccchh--HHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 006615 474 ---ISKFK--LMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEP 548 (638)
Q Consensus 474 ---~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p 548 (638)
...|+ ....+..+...+...|+.++|+++++++.... +-+...+..+...+...|++++|++.+++.... .|
T Consensus 348 ~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~P 424 (765)
T PRK10049 348 GSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EP 424 (765)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CC
Confidence 12233 12355677788899999999999999998762 335677888889999999999999999998874 34
Q ss_pred CHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCc
Q 006615 549 DAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608 (638)
Q Consensus 549 ~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 608 (638)
+ +...+..+...+.+.|++++|+++++++.+..+..|.
T Consensus 425 d----------------------~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 425 R----------------------NINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred C----------------------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 4 3456667777888999999999999999998765543
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.70 E-value=2.1e-12 Score=138.90 Aligned_cols=419 Identities=13% Similarity=0.061 Sum_probs=294.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHH
Q 006615 111 VLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190 (638)
Q Consensus 111 ~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 190 (638)
...+.|++..|...|++..+....-....+ .++..+...|+.++|+..+++..... .........+...+...|++++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 356899999999999999875422112344 88888999999999999999998332 2223333333567888899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615 191 AVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270 (638)
Q Consensus 191 A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 270 (638)
|+++|+++.+.... |...+..++..+...++.++|.+.++.+... .|+...+-.++..+...++..+|++.++++.+
T Consensus 121 Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999986322 5677778888999999999999999999864 56666665454455456777679999999998
Q ss_pred CCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHH
Q 006615 271 DGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALA 350 (638)
Q Consensus 271 ~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (638)
.+..-.........++.+.|-...|.++.++-..- ..+.. ..+++.....
T Consensus 198 ~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~-----------------------------~~~l~~~~~a 247 (822)
T PRK14574 198 LAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEH-----------------------------YRQLERDAAA 247 (822)
T ss_pred hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHH-----------------------------HHHHHHHHHH
Confidence 76443344557788899999999999888764210 00000 0001111111
Q ss_pred HHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCH-----HHHHHHHHHHHhcCChHHH
Q 006615 351 NTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDV-----YALEKMLTILARHGHVELV 425 (638)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~a 425 (638)
..++.- ...+.. .-......+.|+.-++.+...-+-.|.. ...-..+-++...|++.++
T Consensus 248 ~~vr~a------------~~~~~~----~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~v 311 (822)
T PRK14574 248 EQVRMA------------VLPTRS----ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADL 311 (822)
T ss_pred HHHhhc------------cccccc----chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 111110 000000 0001123455666666655433333432 2234567788999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCC-cchhHHHHHHHHHHHHHccCChHHHHHHHH
Q 006615 426 DRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI-SKFKLMLLYSSLLRTLTKCKRDFDAINVLE 504 (638)
Q Consensus 426 ~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 504 (638)
.+.++.+...|......+-..+.++|...+++++|..+|+.+....+.. ..+........|.-+|...+++++|.++++
T Consensus 312 i~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~ 391 (822)
T PRK14574 312 IKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAV 391 (822)
T ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHH
Confidence 9999999999987677888999999999999999999999986543211 122223445788999999999999999999
Q ss_pred HHHhCC-------------CCcchh-hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCC
Q 006615 505 EMIFSG-------------IVPDVQ-TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM 570 (638)
Q Consensus 505 ~m~~~g-------------~~p~~~-t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~ 570 (638)
.+.+.- ..||-. .+..++..+.-.|++.+|++.++++.... |.
T Consensus 392 ~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--P~--------------------- 448 (822)
T PRK14574 392 NYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA--PA--------------------- 448 (822)
T ss_pred HHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC---------------------
Confidence 998831 112222 23455678899999999999999998753 32
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615 571 PDAATKELLKKSLWKEGRRKEAAAVEERCEKIND 604 (638)
Q Consensus 571 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 604 (638)
|......+.+.+...|...+|++.++......+
T Consensus 449 -n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P 481 (822)
T PRK14574 449 -NQNLRIALASIYLARDLPRKAEQELKAVESLAP 481 (822)
T ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Confidence 677778899999999999999999988877654
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.64 E-value=5.3e-12 Score=130.01 Aligned_cols=206 Identities=9% Similarity=0.050 Sum_probs=146.7
Q ss_pred cccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHH
Q 006615 369 FVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD-GMRLPFSTIRLI 447 (638)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~~~~~~~~~l 447 (638)
++-..+-++.+....+...+|..++...+......|++.++ +-..+.+...+..|.+=|....+. ...+|..+.-+|
T Consensus 529 YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl--~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaL 606 (1018)
T KOG2002|consen 529 YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSL--LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIAL 606 (1018)
T ss_pred hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHH--HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHh
Confidence 33333444555566788889999999988777666666544 444566777777787766655433 223576666666
Q ss_pred HHHHcc------------cCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcch
Q 006615 448 IDFYGI------------SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515 (638)
Q Consensus 448 i~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 515 (638)
.+.|.. .+..++|+++|..+.+. .|.+..+-|-+.-.++.+|++.+|..+|....+... -+.
T Consensus 607 GN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~-----dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~ 680 (1018)
T KOG2002|consen 607 GNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN-----DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFE 680 (1018)
T ss_pred hHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc-----CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCC
Confidence 665432 23577888888877654 444456677788889999999999999999998754 255
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 006615 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595 (638)
Q Consensus 516 ~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 595 (638)
.+|-.+..+|...|++..|+++|+...+.-.. .-+......|..++.+.|.+.+|.+.
T Consensus 681 dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~----------------------~~~~~vl~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 681 DVWLNLAHCYVEQGQYRLAIQMYENCLKKFYK----------------------KNRSEVLHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred ceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------------cCCHHHHHHHHHHHHHhhhHHHHHHH
Confidence 67888999999999999999999887654222 22455667788888888888888888
Q ss_pred HHHHHHccC
Q 006615 596 EERCEKIND 604 (638)
Q Consensus 596 ~~~~~~~~~ 604 (638)
........+
T Consensus 739 ll~a~~~~p 747 (1018)
T KOG2002|consen 739 LLKARHLAP 747 (1018)
T ss_pred HHHHHHhCC
Confidence 877766554
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.61 E-value=3.2e-11 Score=124.42 Aligned_cols=490 Identities=13% Similarity=0.036 Sum_probs=327.5
Q ss_pred CCCHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHh--HHH
Q 006615 66 LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSH-NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN--FMN 142 (638)
Q Consensus 66 ~~~~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~--~~~ 142 (638)
|.....+.+.+--.|+++.+..+...+.......+ -...|-.+.+++-..|+++.|...|.+-.+.. ++..+ +--
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~G 347 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVG 347 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccc
Confidence 44445577788889999999999998885432222 23468889999999999999999997776543 44333 445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006615 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG----KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218 (638)
Q Consensus 143 ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~ 218 (638)
|.+.|.+.|+++.+...|+...... +.+..+..+|...|+..+ ..+.|..++....+.- ..|...|-.+-..+-
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE 425 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH
Confidence 8899999999999999999998874 445666777777777764 4566677666666542 236777777766665
Q ss_pred HcCCHHHHHHHHHh----cccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC---------CCCCCHHH-HHHHH
Q 006615 219 NLGKLDSALEVFSA----LPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD---------GKFPGRAM-RVALE 284 (638)
Q Consensus 219 ~~g~~~~A~~~~~~----m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------g~~p~~~~-~~ll~ 284 (638)
...-+. ++..|.. +...+-.+-....|.+.......|++++|...|.+.... |-.+..++ |++-.
T Consensus 426 ~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 426 QTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred hcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 443322 2444433 233343467788899999999999999999999887544 11233333 57777
Q ss_pred HHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHH---HHhhcCCHHHH
Q 006615 285 RMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALA---NTLDEWSPEVV 361 (638)
Q Consensus 285 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 361 (638)
.+-..++.+.|.+.++.+....... +++.--. ...+...+...
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilkehp~Y----------------------------------Id~ylRl~~ma~~k~~~~ea~ 550 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKEHPGY----------------------------------IDAYLRLGCMARDKNNLYEAS 550 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHCchh----------------------------------HHHHHHhhHHHHhccCcHHHH
Confidence 7788889999999999886442211 1111000 00001111111
Q ss_pred H----HhhcCCccc-chHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhc------------CChHH
Q 006615 362 S----LLADAKFVW-TTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH------------GHVEL 424 (638)
Q Consensus 362 ~----~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~------------g~~~~ 424 (638)
. .+......+ ...+++..+.....+..|.+-|..+..+....+|+.+.-+|-..|.+. +..++
T Consensus 551 ~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~K 630 (1018)
T KOG2002|consen 551 LLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEK 630 (1018)
T ss_pred HHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHH
Confidence 1 111111111 123355555566666677776666555555557887776666655432 34678
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHH
Q 006615 425 VDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLE 504 (638)
Q Consensus 425 a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 504 (638)
|+++|.+....... |...-|.+.-.++..|++++|..+|.+.++.... . ..+|-.+..+|..+|++..|+++|+
T Consensus 631 Alq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~--~---~dv~lNlah~~~e~~qy~~AIqmYe 704 (1018)
T KOG2002|consen 631 ALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSD--F---EDVWLNLAHCYVEQGQYRLAIQMYE 704 (1018)
T ss_pred HHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhh--C---CceeeeHHHHHHHHHHHHHHHHHHH
Confidence 99999998877654 7788888888999999999999999998875331 1 2478899999999999999999999
Q ss_pred HHHhC-CCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 006615 505 EMIFS-GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSL 583 (638)
Q Consensus 505 ~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~ 583 (638)
.-.+. .-.-+....+.|.+++-..|.+.+|.+.+.........-..+.||..+...--+..-...++ .|..-+.
T Consensus 705 ~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k--~t~eev~--- 779 (1018)
T KOG2002|consen 705 NCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEK--RTLEEVL--- 779 (1018)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccc--ccHHHHH---
Confidence 86654 33446778889999999999999999998888776544445666665544433322111111 2222222
Q ss_pred hccCcHHHHHHHHHHHHHccCC
Q 006615 584 WKEGRRKEAAAVEERCEKINDV 605 (638)
Q Consensus 584 ~~~g~~~~A~~~~~~~~~~~~~ 605 (638)
...+..++|.++|.++...+..
T Consensus 780 ~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 780 EAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC
Confidence 2337889999999999987753
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.52 E-value=1.1e-09 Score=112.53 Aligned_cols=446 Identities=15% Similarity=0.059 Sum_probs=265.8
Q ss_pred HHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCH
Q 006615 74 HALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153 (638)
Q Consensus 74 ~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 153 (638)
+.+-..|++++|.+++.++.+..+. ....|..|...+-..|+.+.+...+-..-. -.+.|...|..+.....+.|.+
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp~--~~~ay~tL~~IyEqrGd~eK~l~~~llAAH-L~p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDPR--NPIAYYTLGEIYEQRGDIEKALNFWLLAAH-LNPKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHHcccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHhcccH
Confidence 3344459999999999999977533 445899999999999999988776543333 3355667899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHHcCCHHHHHHH
Q 006615 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY----TVMIEHLVNLGKLDSALEV 229 (638)
Q Consensus 154 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty----~~li~~~~~~g~~~~A~~~ 229 (638)
+.|.-.|.+..+.+ +++...+---...|-+.|+...|.+-|.++.....+.|..-+ -.++..+...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999886 555555555677788999999999999999985332232222 2345567777888999998
Q ss_pred HHhcccC-CCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH-------HHHHHHHHcCC-hHHHHHHHH
Q 006615 230 FSALPLM-RIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR-------VALERMQEMGF-IQGANEFLR 300 (638)
Q Consensus 230 ~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~-------~ll~~~~~~g~-~~~a~~~~~ 300 (638)
++..... +-.-+...++.++..|.+...++.|.....++......+|..-. .-...++..|+ ..--+.+++
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 8877652 22345677899999999999999999999888775444443211 00111111111 000001111
Q ss_pred HhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHH
Q 006615 301 EMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVL 380 (638)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (638)
.| +|...
T Consensus 383 l~-------------------------------------------------------------------------icL~~ 389 (895)
T KOG2076|consen 383 LM-------------------------------------------------------------------------ICLVH 389 (895)
T ss_pred Hh-------------------------------------------------------------------------hhhhc
Confidence 11 11111
Q ss_pred hccCChhHHHHHHHHHhcCCC--CcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHH
Q 006615 381 RHFKSPETAWHFFCWVAYQPG--YTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458 (638)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 458 (638)
-+.+...+++..|-. ... ..-+...|..+..+|...|++.+|.++|..+......-+...|-.+..+|-..|.++
T Consensus 390 L~~~e~~e~ll~~l~---~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 390 LKERELLEALLHFLV---EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred ccccchHHHHHHHHH---HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 111112222222111 111 222344566666666666666666666666665544445556666666666666666
Q ss_pred HHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHh--------CCCCcchhhHHHHHHHHHccCC
Q 006615 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF--------SGIVPDVQTFSGLMYHFALQGD 530 (638)
Q Consensus 459 ~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--------~g~~p~~~t~~~li~~~~~~g~ 530 (638)
.|...|...... .|+....--.|-..+.+.|+.++|.+.+..|.. .+..|+..........+...|+
T Consensus 467 ~A~e~y~kvl~~-----~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 467 EAIEFYEKVLIL-----APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred HHHHHHHHHHhc-----CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 666666666543 333223334445556666666666666666431 2233444444444555566666
Q ss_pred HHHHHHHHHHHHhCC-----C-----------------CCCHhhHHHHHHHHHHH-----hh-------------hCCCC
Q 006615 531 EKIVQKLFSMVRQNG-----V-----------------EPDAYMFKVLIQAYCKY-----LS-------------NSNLM 570 (638)
Q Consensus 531 ~~~a~~l~~~m~~~~-----~-----------------~p~~~~~~~li~~~~~~-----m~-------------~~g~~ 570 (638)
.++-..+-.+|.... + .-...+-..++.+-.+. +. ..|+.
T Consensus 542 ~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Ls 621 (895)
T KOG2076|consen 542 REEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLS 621 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCc
Confidence 655444443333211 0 00111111111111111 11 22333
Q ss_pred CCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615 571 PDA--ATKELLKKSLWKEGRRKEAAAVEERCEKIND 604 (638)
Q Consensus 571 p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 604 (638)
-+. ..+.-++.++++.|++++|..+...+.+...
T Consensus 622 iddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~ 657 (895)
T KOG2076|consen 622 IDDWFELFRELILSLAKLQRVQEALSVVFTALEAYI 657 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh
Confidence 321 2457788899999999999999999888665
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.45 E-value=3.9e-10 Score=114.02 Aligned_cols=283 Identities=11% Similarity=0.036 Sum_probs=206.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCCHHHHH
Q 006615 150 SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT--VMIEHLVNLGKLDSAL 227 (638)
Q Consensus 150 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~--~li~~~~~~g~~~~A~ 227 (638)
.|+++.|.+.+....+..-.| ...|-....+..+.|+++.|.+.|.++.+. .|+...+. .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 589999998887765543112 223333344457889999999999999873 56654433 3356788899999999
Q ss_pred HHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH--------HHHHHHHHcCChHHHHHHH
Q 006615 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR--------VALERMQEMGFIQGANEFL 299 (638)
Q Consensus 228 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~--------~ll~~~~~~g~~~~a~~~~ 299 (638)
+.++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++.... .++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999987754 235677888889999999999999999999888766433221 1122222222333333344
Q ss_pred HHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHH
Q 006615 300 REMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKV 379 (638)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (638)
+.+..
T Consensus 253 ~~lp~--------------------------------------------------------------------------- 257 (398)
T PRK10747 253 KNQSR--------------------------------------------------------------------------- 257 (398)
T ss_pred HhCCH---------------------------------------------------------------------------
Confidence 33311
Q ss_pred HhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHH
Q 006615 380 LRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADA 459 (638)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 459 (638)
..+.++.....+...+...|+.++|.+++.+..+. .|+... .++.+....++.++
T Consensus 258 ---------------------~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~ 312 (398)
T PRK10747 258 ---------------------KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQ 312 (398)
T ss_pred ---------------------HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHH
Confidence 11346777888999999999999999999998874 445422 23444556699999
Q ss_pred HHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHH
Q 006615 460 ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFS 539 (638)
Q Consensus 460 A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~ 539 (638)
+.+..+...+. .|+++..+..+...+.+.|++++|.+.|+...+. .|+..+|..+...+.+.|+.++|.++++
T Consensus 313 al~~~e~~lk~-----~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 313 LEKVLRQQIKQ-----HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred HHHHHHHHHhh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999988765 4555567889999999999999999999999985 6999999999999999999999999998
Q ss_pred HHHh
Q 006615 540 MVRQ 543 (638)
Q Consensus 540 ~m~~ 543 (638)
+-..
T Consensus 386 ~~l~ 389 (398)
T PRK10747 386 DGLM 389 (398)
T ss_pred HHHh
Confidence 7654
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.44 E-value=6.9e-10 Score=112.24 Aligned_cols=283 Identities=8% Similarity=0.032 Sum_probs=195.3
Q ss_pred cCCChhHHHHHHHHHHcCCCCCCChhHHHHH-HHHHHhcCChHHHHHHHHHHHhCCCCCchHhHH--HHHHHHHhcCCHH
Q 006615 78 SAPNADSALSIMEALKSNPNFSHNQSTLHAL-ATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM--NLMQWYSTSGDLE 154 (638)
Q Consensus 78 ~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~ 154 (638)
..|+++.|.+......... +.+..+..+ ..+....|+++.+...+.++.+. .|+..... .....+...|+++
T Consensus 96 ~eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHH
Confidence 3589999988877765442 122233333 44447889999999999888764 34443222 3467888889999
Q ss_pred HHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHHHH
Q 006615 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNS-------RTYTVMIEHLVNLGKLDSAL 227 (638)
Q Consensus 155 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~ty~~li~~~~~~g~~~~A~ 227 (638)
.|...++++.+.+ +-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++....+..+.+...
T Consensus 171 ~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 171 AARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999998876 446778888889999999999999999999987655322 23344444445556667777
Q ss_pred HHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCcc
Q 006615 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKR 307 (638)
Q Consensus 228 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 307 (638)
++++.+.+. .+.+......+...+...|+.++|.+++++..+.. |+. ....+.+....++.+++.+..+...+.
T Consensus 250 ~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~-~l~~l~~~l~~~~~~~al~~~e~~lk~-- 323 (398)
T PRK10747 250 RWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDE-RLVLLIPRLKTNNPEQLEKVLRQQIKQ-- 323 (398)
T ss_pred HHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCH-HHHHHHhhccCCChHHHHHHHHHHHhh--
Confidence 777777643 23467788888899999999999999998887643 333 222333444556777776666655321
Q ss_pred ccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChh
Q 006615 308 IKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPE 387 (638)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (638)
T Consensus 324 -------------------------------------------------------------------------------- 323 (398)
T PRK10747 324 -------------------------------------------------------------------------------- 323 (398)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhc
Q 006615 388 TAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDD 467 (638)
Q Consensus 388 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 467 (638)
. +-|...+..+-..|.+.+++++|.+.|+...+. .|+..++..+..++.+.|+.++|.+++++.
T Consensus 324 ------------~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 324 ------------H--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred ------------C--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 224555667777888888888888888887764 467777777777777888888887777764
Q ss_pred h
Q 006615 468 R 468 (638)
Q Consensus 468 ~ 468 (638)
.
T Consensus 388 l 388 (398)
T PRK10747 388 L 388 (398)
T ss_pred H
Confidence 3
No 32
>PF13041 PPR_2: PPR repeat family
Probab=99.43 E-value=2.8e-13 Score=91.41 Aligned_cols=50 Identities=34% Similarity=0.569 Sum_probs=37.3
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 006615 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219 (638)
Q Consensus 170 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~ 219 (638)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 66777777777777777777777777777777777777777777777764
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.43 E-value=1.7e-08 Score=100.04 Aligned_cols=426 Identities=12% Similarity=0.085 Sum_probs=251.0
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHH----HHhcCCCCCHHhHHHHHHHHHhcC
Q 006615 111 VLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNE----YRQRAKLLSTESYNIVMSVYAKTG 186 (638)
Q Consensus 111 ~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~----m~~~~~~p~~~~~~~li~~~~~~g 186 (638)
+|++..-++.|..+++..++. ++.+...|.+-...=-..|+.+...++.++ +...|+..+...|-.=...|-+.|
T Consensus 415 AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 344444455555555554442 344444444444444444555554444433 233344445555544444455555
Q ss_pred ChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHH
Q 006615 187 KNFEAVETFRQVIDEGAIPN--SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL 264 (638)
Q Consensus 187 ~~~~A~~~~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 264 (638)
..-.+..+......-|+.-. ..||+.--..|.+.+.++-|..+|....+. +..+...|......--..|..++...+
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Al 572 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEAL 572 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 55555555555544444321 234444445555555555555555554432 122344455444444445555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCC
Q 006615 265 LNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWL 344 (638)
Q Consensus 265 ~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (638)
|++....-.+....+.-....+-..|++..|..++.+...-
T Consensus 573 lqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~--------------------------------------- 613 (913)
T KOG0495|consen 573 LQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--------------------------------------- 613 (913)
T ss_pred HHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh---------------------------------------
Confidence 55554433222222222223344445555555555443211
Q ss_pred ChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHH
Q 006615 345 DPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVEL 424 (638)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 424 (638)
...+.-+| +...++......++.|..+|.... +..|+...|..-+..---.+..++
T Consensus 614 -------------------~pnseeiw--laavKle~en~e~eraR~llakar---~~sgTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 614 -------------------NPNSEEIW--LAAVKLEFENDELERARDLLAKAR---SISGTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred -------------------CCCcHHHH--HHHHHHhhccccHHHHHHHHHHHh---ccCCcchhhHHHhHHHHHhhhHHH
Confidence 00000111 223344556788999999998764 456778888777777777889999
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHH
Q 006615 425 VDRLIAKLRSDGMRLP-FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVL 503 (638)
Q Consensus 425 a~~l~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 503 (638)
|.+++++..+. .|+ ...|..+.+.+-+.++++.|...|..-.+. .|+....|-.|...=-+.|.+-.|..+|
T Consensus 670 A~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-----cP~~ipLWllLakleEk~~~~~rAR~il 742 (913)
T KOG0495|consen 670 ALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-----CPNSIPLWLLLAKLEEKDGQLVRARSIL 742 (913)
T ss_pred HHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-----CCCCchHHHHHHHHHHHhcchhhHHHHH
Confidence 99999887764 334 466777888899999999999999876555 3444467888888888899999999999
Q ss_pred HHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHH---------hhhCCCCCCHH
Q 006615 504 EEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY---------LSNSNLMPDAA 574 (638)
Q Consensus 504 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~---------m~~~g~~p~~~ 574 (638)
++..-.+ +-|...|-..|+.=.+.|+.+.|..++.+..+. +..+...|..-|....+. +++... |..
T Consensus 743 drarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce~--dph 818 (913)
T KOG0495|consen 743 DRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH--DPH 818 (913)
T ss_pred HHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhccC--Cch
Confidence 9988764 237888999999999999999999999887765 333444444444443332 444433 334
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCcccccceeee
Q 006615 575 TKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAV 617 (638)
Q Consensus 575 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~w~~ 617 (638)
..-.+...+....+++.|.+.|.+....+ +.++..|..
T Consensus 819 Vllaia~lfw~e~k~~kar~Wf~Ravk~d-----~d~GD~wa~ 856 (913)
T KOG0495|consen 819 VLLAIAKLFWSEKKIEKAREWFERAVKKD-----PDNGDAWAW 856 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccC-----CccchHHHH
Confidence 44556666777777777777777776654 234555544
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.41 E-value=3.4e-11 Score=122.65 Aligned_cols=90 Identities=17% Similarity=0.074 Sum_probs=70.0
Q ss_pred CCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhh
Q 006615 438 RLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT 517 (638)
Q Consensus 438 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 517 (638)
.|++.+|..++.+-..+|+.+.|..++.+|++.+-++.. .-|..|+-+ .+...-+..+++.|.+.|+.|+..|
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~----HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT 273 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA----HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSET 273 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc----ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcch
Confidence 578888888888888888888888888888887665543 334555544 7888888999999999999999999
Q ss_pred HHHHHHHHHccCCHHHH
Q 006615 518 FSGLMYHFALQGDEKIV 534 (638)
Q Consensus 518 ~~~li~~~~~~g~~~~a 534 (638)
+..-+..+...|....+
T Consensus 274 ~adyvip~l~N~~t~~~ 290 (1088)
T KOG4318|consen 274 QADYVIPQLSNGQTKYG 290 (1088)
T ss_pred hHHHHHhhhcchhhhhc
Confidence 99888888876664433
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.40 E-value=9.9e-10 Score=111.76 Aligned_cols=294 Identities=10% Similarity=0.004 Sum_probs=197.8
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCCHH
Q 006615 148 STSGDLELVLSTWNEYRQRAKLLS-TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSR--TYTVMIEHLVNLGKLD 224 (638)
Q Consensus 148 ~~~g~~~~A~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--ty~~li~~~~~~g~~~ 224 (638)
...|+++.|.+.+.+..+.. |+ ...|-....++.+.|+.+.|.+.|.+..+. .|+.. ..-+....+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence 35688888888887776653 43 333334456677778888888888887764 24432 3333467777888888
Q ss_pred HHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH-H---HHHHHcCChHHHHHHHH
Q 006615 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA-L---ERMQEMGFIQGANEFLR 300 (638)
Q Consensus 225 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~l-l---~~~~~~g~~~~a~~~~~ 300 (638)
.|.+.++.+.+.. +-+..++..+...+...|++++|.+++..+.+.++.+......+ . .+....+..+++.+.+.
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 8888888888754 23566778888888888999988888888888775543332111 1 11111111111111222
Q ss_pred HhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHH
Q 006615 301 EMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVL 380 (638)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (638)
.+.
T Consensus 250 ~~~----------------------------------------------------------------------------- 252 (409)
T TIGR00540 250 NWW----------------------------------------------------------------------------- 252 (409)
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 111
Q ss_pred hccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHcccCCHHH
Q 006615 381 RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI-RLIIDFYGISKKADA 459 (638)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~ 459 (638)
... ....+.+...+..+...+...|+.++|.+++++..+.........+ ....-.....++.+.
T Consensus 253 -------------~~~--p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 253 -------------KNQ--PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred -------------HHC--CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence 000 0011236777888889999999999999999999886543322111 111222344577888
Q ss_pred HHHHHHhchhccCCCcchhHH--HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHH
Q 006615 460 ALKAFHDDRTLCGPISKFKLM--LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKL 537 (638)
Q Consensus 460 A~~~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l 537 (638)
+.+.++...+. .|+.+ ....++...+.+.|++++|.+.|+........||...+..+...+.+.|+.++|.++
T Consensus 318 ~~~~~e~~lk~-----~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 318 LEKLIEKQAKN-----VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred HHHHHHHHHHh-----CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888887765 34443 567788899999999999999999644444579999999999999999999999999
Q ss_pred HHHHHh
Q 006615 538 FSMVRQ 543 (638)
Q Consensus 538 ~~~m~~ 543 (638)
|++...
T Consensus 393 ~~~~l~ 398 (409)
T TIGR00540 393 RQDSLG 398 (409)
T ss_pred HHHHHH
Confidence 997643
No 36
>PF13041 PPR_2: PPR repeat family
Probab=99.40 E-value=5.2e-13 Score=90.10 Aligned_cols=50 Identities=34% Similarity=0.741 Sum_probs=35.0
Q ss_pred cchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 006615 513 PDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCK 562 (638)
Q Consensus 513 p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~ 562 (638)
||.++||++|++|++.|++++|.++|++|.+.|+.||..||+.||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 66677777777777777777777777777777777777777777766653
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.39 E-value=1.4e-09 Score=110.64 Aligned_cols=290 Identities=8% Similarity=0.051 Sum_probs=172.5
Q ss_pred cCCChhHHHHHHHHHHcCCCCCCChh-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHH
Q 006615 78 SAPNADSALSIMEALKSNPNFSHNQS-TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156 (638)
Q Consensus 78 ~~~~~~~Al~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 156 (638)
..|+++.|.+.+....+. .|++. .+-....+....|+.+.+...+.+..+....+...........+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 568888888888776643 23332 23334455667788888888888876543222222333457777788888888
Q ss_pred HHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHH---HHcCC----HHHHHH
Q 006615 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT-VMIEHL---VNLGK----LDSALE 228 (638)
Q Consensus 157 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~-~li~~~---~~~g~----~~~A~~ 228 (638)
...++++.+.+ +-+...+..+...+.+.|++++|.+++..+.+.++. +...+. .-..++ ...+. .+...+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888888775 445667778888888888888888888888887654 333231 111111 22222 233333
Q ss_pred HHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHcCChHHHHHHHHHhCcCc
Q 006615 229 VFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERM--QEMGFIQGANEFLREMLPDK 306 (638)
Q Consensus 229 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~ 306 (638)
.++..... .+.+...+..+...+...|+.++|.+++++..+....+....+.++..+ ...++.+.+.+.++..
T Consensus 251 ~~~~~p~~-~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~---- 325 (409)
T TIGR00540 251 WWKNQPRH-RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ---- 325 (409)
T ss_pred HHHHCCHH-HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHH----
Confidence 34333211 1136677777888888888888888888888765433322111122111 1123333333333222
Q ss_pred cccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCCh
Q 006615 307 RIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSP 386 (638)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (638)
T Consensus 326 -------------------------------------------------------------------------------- 325 (409)
T TIGR00540 326 -------------------------------------------------------------------------------- 325 (409)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHh
Q 006615 387 ETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD 466 (638)
Q Consensus 387 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 466 (638)
....+-.|+.....++-..+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++
T Consensus 326 ----------lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 326 ----------AKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred ----------HHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2222222222445567777777888888888887544444566776677777777777777777777776
Q ss_pred c
Q 006615 467 D 467 (638)
Q Consensus 467 ~ 467 (638)
.
T Consensus 396 ~ 396 (409)
T TIGR00540 396 S 396 (409)
T ss_pred H
Confidence 3
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.38 E-value=3.7e-12 Score=122.93 Aligned_cols=127 Identities=14% Similarity=0.106 Sum_probs=54.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHH
Q 006615 411 KMLTILARHGHVELVDRLIAKLRSDG-MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRT 489 (638)
Q Consensus 411 ~li~~~~~~g~~~~a~~l~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 489 (638)
.++..+.+.++++++.++++.+.... ...+...|..+...+.+.|+.++|.+.+++..+. .|+.....+.++..
T Consensus 115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-----~P~~~~~~~~l~~~ 189 (280)
T PF13429_consen 115 SALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL-----DPDDPDARNALAWL 189 (280)
T ss_dssp ---H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------TT-HHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHH
Confidence 33444444444444444444433211 1223334444444444444444444444444433 23223344555555
Q ss_pred HHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543 (638)
Q Consensus 490 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~ 543 (638)
+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|...|++..+
T Consensus 190 li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 190 LIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc
Confidence 555555555555555544432 22334445555555555555555555555544
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.38 E-value=2.8e-12 Score=123.78 Aligned_cols=260 Identities=16% Similarity=0.108 Sum_probs=98.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccC
Q 006615 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY-TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256 (638)
Q Consensus 178 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 256 (638)
+...+.+.|++++|++++++-....-+|+...| ..+...+...++.+.|.+.++++...+-. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 345555666666666666544333212333333 33333444556666666666666654321 34445555555 5666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCcccc
Q 006615 257 RFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIA 335 (638)
Q Consensus 257 ~~~~A~~l~~~m~~~g~~p~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (638)
++++|.+++.+.-+.. ++... ...+..+...++++++.++++.+.
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~-------------------------------- 137 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLE-------------------------------- 137 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHH--------------------------------
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHH--------------------------------
Confidence 6666666665543332 22222 244455556666666666655542
Q ss_pred ccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHH
Q 006615 336 YGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415 (638)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 415 (638)
.......+...|..+...
T Consensus 138 --------------------------------------------------------------~~~~~~~~~~~~~~~a~~ 155 (280)
T PF13429_consen 138 --------------------------------------------------------------ELPAAPDSARFWLALAEI 155 (280)
T ss_dssp --------------------------------------------------------------H-T---T-HHHHHHHHHH
T ss_pred --------------------------------------------------------------hccCCCCCHHHHHHHHHH
Confidence 111223467778888888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCC
Q 006615 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR 495 (638)
Q Consensus 416 ~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 495 (638)
+.+.|+.++|.+.+++..+..+. |......++..+...|+.+++..++....... |+....|..+..+|...|+
T Consensus 156 ~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~la~~~~~lg~ 229 (280)
T PF13429_consen 156 YEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-----PDDPDLWDALAAAYLQLGR 229 (280)
T ss_dssp HHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSCCHCHHHHHHHHHHT-
T ss_pred HHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----cCHHHHHHHHHHHhccccc
Confidence 88999999999999998877643 57778888889999999988888887766542 2222467888889999999
Q ss_pred hHHHHHHHHHHHhCCCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615 496 DFDAINVLEEMIFSGIVP-DVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543 (638)
Q Consensus 496 ~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~ 543 (638)
.++|+..|++..+. .| |......+..++...|+.++|.++.++..+
T Consensus 230 ~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 230 YEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 99999999998874 34 677777888899999999999998876653
No 40
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.37 E-value=2.2e-09 Score=109.79 Aligned_cols=139 Identities=12% Similarity=0.071 Sum_probs=78.2
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCCHhhHHHHHHHHH
Q 006615 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG--VEPDAYMFKVLIQAYC 561 (638)
Q Consensus 484 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~--~~p~~~~~~~li~~~~ 561 (638)
+.++..|+..-+..+++..-+.....-+ | ..|..||+-+......+.|..+.++..... +.-|..-+..+.+.+.
T Consensus 463 ~ql~l~l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~ 539 (1088)
T KOG4318|consen 463 NQLHLTLNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQ 539 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHH
Confidence 4445555555455555443333322111 1 446666666666666666666666655332 2334444444444444
Q ss_pred HH------------hhh-CCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCcccccceeee--eccccchh
Q 006615 562 KY------------LSN-SNLMPD-AATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAV--SSADLTRV 625 (638)
Q Consensus 562 ~~------------m~~-~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~w~~--~~~~~~~~ 625 (638)
+. +++ ....|+ ..+.-.+++.....|+.+...++++-+...|... .+..|.+ .+.+++.+
T Consensus 540 r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e----tgPl~~vhLrkdd~s~a 615 (1088)
T KOG4318|consen 540 RLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE----TGPLWMVHLRKDDQSAA 615 (1088)
T ss_pred HhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh----cccceEEEeeccchhhh
Confidence 33 221 222343 3455667788888999999999999999988754 2556665 55666666
Q ss_pred cccc
Q 006615 626 HSIY 629 (638)
Q Consensus 626 ~~~~ 629 (638)
.+..
T Consensus 616 ~ea~ 619 (1088)
T KOG4318|consen 616 QEAP 619 (1088)
T ss_pred hhcc
Confidence 5544
No 41
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.37 E-value=3.7e-09 Score=99.18 Aligned_cols=291 Identities=13% Similarity=0.088 Sum_probs=217.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006615 150 SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229 (638)
Q Consensus 150 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~ 229 (638)
.|++..|+++..+-.+.+-.| ...|-.-..+--+.|+.+.+-.++.+..+.--.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 489999999998887777444 5556666677778899999999999988853355666777777888889999999988
Q ss_pred HHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH--------HHHHHHHHcCChHHHHHHHHH
Q 006615 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR--------VALERMQEMGFIQGANEFLRE 301 (638)
Q Consensus 230 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~--------~ll~~~~~~g~~~~a~~~~~~ 301 (638)
++++.+.+ ..+.........+|.+.|++.+...++.+|.+.|...+...- .++.-....+..+.-...|++
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 88887765 346778888999999999999999999999999888776431 223222233333333333333
Q ss_pred hCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHh
Q 006615 302 MLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLR 381 (638)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (638)
..
T Consensus 255 ~p------------------------------------------------------------------------------ 256 (400)
T COG3071 255 QP------------------------------------------------------------------------------ 256 (400)
T ss_pred cc------------------------------------------------------------------------------
Confidence 31
Q ss_pred ccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHH
Q 006615 382 HFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL 461 (638)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 461 (638)
...+.++..-.+++.-+.++|+.++|.++..+..+++..|+.. ..-.+.+.++.+.-.
T Consensus 257 ------------------r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~ 314 (400)
T COG3071 257 ------------------RKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLI 314 (400)
T ss_pred ------------------HHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHH
Confidence 1223355666778888999999999999999999888776621 223455667766666
Q ss_pred HHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHH
Q 006615 462 KAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541 (638)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m 541 (638)
+..+.-....+. + +..+.+|...|.+.+.+.+|.+.|+...+. .|+..+|+.+-.++.+.|+..+|.++.++.
T Consensus 315 k~~e~~l~~h~~--~---p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 315 KAAEKWLKQHPE--D---PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred HHHHHHHHhCCC--C---hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 666655444322 2 357999999999999999999999988775 799999999999999999999999999988
Q ss_pred HhCCCCCC
Q 006615 542 RQNGVEPD 549 (638)
Q Consensus 542 ~~~~~~p~ 549 (638)
...-.+|+
T Consensus 388 L~~~~~~~ 395 (400)
T COG3071 388 LLLTRQPN 395 (400)
T ss_pred HHHhcCCC
Confidence 75544444
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=6e-08 Score=92.63 Aligned_cols=436 Identities=14% Similarity=0.067 Sum_probs=264.4
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhc------------------CChHHHHH----HHHH
Q 006615 70 FIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKS------------------QRNHELKT----LIGD 127 (638)
Q Consensus 70 ~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~------------------~~~~~a~~----l~~~ 127 (638)
..+..++.....++.|.-+++..... ...+++.+++- .....-.. +...
T Consensus 82 y~laks~fd~kEf~Raa~fL~~~~s~---------k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~ 152 (559)
T KOG1155|consen 82 YLLAKSYFDCKEFERAAFFLQNCKSK---------KSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKP 152 (559)
T ss_pred hhhHhhhhhhHHHHHHHHHHHhcchH---------HHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhH
Confidence 34567777888888888888776532 22233333221 11111111 1111
Q ss_pred HH--hCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006615 128 IS--SSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP 205 (638)
Q Consensus 128 ~~--~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 205 (638)
+. ..+...|...+-.....+-+.|....|...|-.....- +-.-.+|-.|... ..+.+.+..+.. |...
T Consensus 153 le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~l---it~~e~~~~l~~-----~l~~ 223 (559)
T KOG1155|consen 153 LESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSEL---ITDIEILSILVV-----GLPS 223 (559)
T ss_pred HHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHh---hchHHHHHHHHh-----cCcc
Confidence 22 12333444333333344456667777777776666542 2222333333222 222222222211 1221
Q ss_pred CHHHHH--HHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--CHHHH-
Q 006615 206 NSRTYT--VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP--GRAMR- 280 (638)
Q Consensus 206 ~~~ty~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~~~- 280 (638)
|..-.. -+..++-.....+++.+-.+.....|+.-+...-+-...+.-...++++|+.+|+++.+.+.-. |..+|
T Consensus 224 ~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlyS 303 (559)
T KOG1155|consen 224 DMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYS 303 (559)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHh
Confidence 211111 2334566666778887777777777764444333433445556788899999999888774322 22344
Q ss_pred HHHHHHHHcCChHH---HHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCC
Q 006615 281 VALERMQEMGFIQG---ANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWS 357 (638)
Q Consensus 281 ~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (638)
+++-. +..+..- |..++. +
T Consensus 304 N~LYv--~~~~skLs~LA~~v~~-i------------------------------------------------------- 325 (559)
T KOG1155|consen 304 NVLYV--KNDKSKLSYLAQNVSN-I------------------------------------------------------- 325 (559)
T ss_pred HHHHH--HhhhHHHHHHHHHHHH-h-------------------------------------------------------
Confidence 33322 2211111 111110 0
Q ss_pred HHHHHHhhcCCccc-chHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006615 358 PEVVSLLADAKFVW-TTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436 (638)
Q Consensus 358 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 436 (638)
+.+.| +-.+++..+.-.++.++|...|+....-. +-....|+.|-+-|....+...|.+-++..++-+
T Consensus 326 ---------dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~ 394 (559)
T KOG1155|consen 326 ---------DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN 394 (559)
T ss_pred ---------ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence 01111 22346777777899999999999886443 2245578888899999999999999999999876
Q ss_pred CCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchh
Q 006615 437 MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516 (638)
Q Consensus 437 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 516 (638)
.. |-..|-.|.++|.-.+...-|+-+|++..+. +|++...|.+|..+|.+.++.++|++.|.+....|-. +..
T Consensus 395 p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-----kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~ 467 (559)
T KOG1155|consen 395 PR-DYRAWYGLGQAYEIMKMHFYALYYFQKALEL-----KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGS 467 (559)
T ss_pred ch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-----CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chH
Confidence 54 7788999999999999999999999998865 7777789999999999999999999999999987633 668
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHh----CCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHH
Q 006615 517 TFSGLMYHFALQGDEKIVQKLFSMVRQ----NGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEA 592 (638)
Q Consensus 517 t~~~li~~~~~~g~~~~a~~l~~~m~~----~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 592 (638)
.+..|.+.|-+.++..+|...|+.-.+ .|..-+......+. ++....+.+---.+..|.+..... ....+||
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~f--LA~~f~k~~~~~~As~Ya~~~~~~--~~e~eea 543 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLF--LAEYFKKMKDFDEASYYATLVLKG--ETECEEA 543 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHH--HHHHHHhhcchHHHHHHHHHHhcC--CchHHHH
Confidence 899999999999999999999976554 34332322222211 222222222222344454444443 5567888
Q ss_pred HHHHHHHHHcc
Q 006615 593 AAVEERCEKIN 603 (638)
Q Consensus 593 ~~~~~~~~~~~ 603 (638)
..++.++....
T Consensus 544 k~LlReir~~~ 554 (559)
T KOG1155|consen 544 KALLREIRKIQ 554 (559)
T ss_pred HHHHHHHHHhc
Confidence 88888877654
No 43
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.35 E-value=2e-07 Score=92.71 Aligned_cols=474 Identities=11% Similarity=0.080 Sum_probs=304.4
Q ss_pred HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHH----HHhCCCCCchHhHHHHHHHH
Q 006615 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD----ISSSKFLNVSVNFMNLMQWY 147 (638)
Q Consensus 72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~----~~~~~~~~~~~~~~~ll~~~ 147 (638)
+.-+|.+...|+.|..+++..++. ++.++..|-+-...--..|+.+...+++++ +...|+..+...|-.=...|
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 556788888899999999999875 456667777777777788999988888765 34577777777777667777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCC--CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHH
Q 006615 148 STSGDLELVLSTWNEYRQRAKLL--STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLD 224 (638)
Q Consensus 148 ~~~g~~~~A~~l~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~ 224 (638)
-..|..-.+..+......-|+.- --.||+.--..|.+.+.++-|..+|....+. .| +...|.-....--..|..+
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~E 567 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRE 567 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHH
Confidence 77777777777776666555432 2346666667777777777777777766653 23 3444444444444456666
Q ss_pred HHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCc
Q 006615 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLP 304 (638)
Q Consensus 225 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 304 (638)
+-..+|++....- +.....|-....-+-..|++..|..++....+........++..+..-.....++.|..+|.+...
T Consensus 568 sl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 568 SLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 6666666655431 223333444445555566666666666666555444333444555555566666666666655533
Q ss_pred CccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCC---HHHHHHhhc-CCcccchHHHHHHH
Q 006615 305 DKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWS---PEVVSLLAD-AKFVWTTRLVCKVL 380 (638)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~ 380 (638)
...+..+.+ ..-.+...+.... ..+...+.. +.+.--.+++++.+
T Consensus 647 ~sgTeRv~m-------------------------------Ks~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~ 695 (913)
T KOG0495|consen 647 ISGTERVWM-------------------------------KSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIE 695 (913)
T ss_pred cCCcchhhH-------------------------------HHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHH
Confidence 221111110 0001111110000 000000111 11222345678888
Q ss_pred hccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHH
Q 006615 381 RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAA 460 (638)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 460 (638)
...++.+.|.+.|..-.. .++..+..|-.+...=-+.|++-.|..++++..-++.. +...|-..|.+=.+.|..+.|
T Consensus 696 e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a 772 (913)
T KOG0495|consen 696 EQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQA 772 (913)
T ss_pred HHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHH
Confidence 888888888888875432 22334456777766677788888999999988877765 778888888888899999999
Q ss_pred HHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHH
Q 006615 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540 (638)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~ 540 (638)
..+..+..+.++. ....|..-|....+.++-..+...+ ++ +.-|.+..-.+...|-...++++|.+-|.+
T Consensus 773 ~~lmakALQecp~-----sg~LWaEaI~le~~~~rkTks~DAL---kk--ce~dphVllaia~lfw~e~k~~kar~Wf~R 842 (913)
T KOG0495|consen 773 ELLMAKALQECPS-----SGLLWAEAIWLEPRPQRKTKSIDAL---KK--CEHDPHVLLAIAKLFWSEKKIEKAREWFER 842 (913)
T ss_pred HHHHHHHHHhCCc-----cchhHHHHHHhccCcccchHHHHHH---Hh--ccCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888776443 2367888888877777754444433 33 245777777788888888889999999988
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCcccccceeeeecc
Q 006615 541 VRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAVSSA 620 (638)
Q Consensus 541 m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 620 (638)
..+.+ || +-.+|.-+...+.+.|.-++-.++++...... +.++..|...++
T Consensus 843 avk~d--~d----------------------~GD~wa~fykfel~hG~eed~kev~~~c~~~E-----P~hG~~W~avSK 893 (913)
T KOG0495|consen 843 AVKKD--PD----------------------NGDAWAWFYKFELRHGTEEDQKEVLKKCETAE-----PTHGELWQAVSK 893 (913)
T ss_pred HHccC--Cc----------------------cchHHHHHHHHHHHhCCHHHHHHHHHHHhccC-----CCCCcHHHHHhh
Confidence 88753 22 24567778888899999999999999977654 457778988777
Q ss_pred ccc
Q 006615 621 DLT 623 (638)
Q Consensus 621 ~~~ 623 (638)
+..
T Consensus 894 ~i~ 896 (913)
T KOG0495|consen 894 DIK 896 (913)
T ss_pred hHH
Confidence 754
No 44
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.33 E-value=5.7e-08 Score=100.32 Aligned_cols=398 Identities=14% Similarity=0.125 Sum_probs=272.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChH
Q 006615 110 TVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF 189 (638)
Q Consensus 110 ~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 189 (638)
..+...|++++|.+++.++++.. +.+...|..|...|-+.|+.+++...+--.-..+ +-|...|-.+-....+.|+++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 33445599999999999998764 4566679999999999999999998876665543 557789999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHH----HHHHHHHHccCCHHHHHHHH
Q 006615 190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY----LILVEGFVGVERFDEAKSLL 265 (638)
Q Consensus 190 ~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g~~~~A~~l~ 265 (638)
.|.-.|.+..+.. +++...+--=...|-+.|+...|.+-|.++.+..-..|..-. -.++..+...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999863 235444445567788999999999999998764311122222 23456677788889999999
Q ss_pred HHHHhC--CCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCC
Q 006615 266 NEMRDD--GKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPW 343 (638)
Q Consensus 266 ~~m~~~--g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (638)
+..... +...-.....+...+.+...++.+...+..+......++.. ......
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~----------------e~~~~~--------- 358 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDS----------------EWDTDE--------- 358 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChh----------------hhhhhh---------
Confidence 888662 22222233456667778888888888877765411111000 000000
Q ss_pred CChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChH
Q 006615 344 LDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVE 423 (638)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 423 (638)
.+...++ .+. ....+..++... .-++-++.+....+
T Consensus 359 ---------~~~~~~~--------------------------------~~~--~~~~~~s~~l~v-~rl~icL~~L~~~e 394 (895)
T KOG2076|consen 359 ---------RRREEPN--------------------------------ALC--EVGKELSYDLRV-IRLMICLVHLKERE 394 (895)
T ss_pred ---------hcccccc--------------------------------ccc--cCCCCCCccchh-HhHhhhhhcccccc
Confidence 0000000 000 012233444444 23444566667777
Q ss_pred HHHHHHHHHHHcCCCC--CHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHH
Q 006615 424 LVDRLIAKLRSDGMRL--PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAIN 501 (638)
Q Consensus 424 ~a~~l~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 501 (638)
....+.....+..+.| +...|.-+.++|...|++.+|..+|..+....+... ...|-.+..+|...|..++|.+
T Consensus 395 ~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~----~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 395 LLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN----AFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred hHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc----hhhhHHHHHHHHHHhhHHHHHH
Confidence 7777777777777443 457788899999999999999999999876543322 4789999999999999999999
Q ss_pred HHHHHHhCCCCcc-hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 006615 502 VLEEMIFSGIVPD-VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLK 580 (638)
Q Consensus 502 l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li 580 (638)
.|+..... .|+ ...-.+|-.-+-+.|+.++|.+.++.+. .||..+ ....+..|+...--...
T Consensus 471 ~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~----~~D~~~-----------~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 471 FYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII----NPDGRN-----------AEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc----CCCccc-----------hhhccccHHHHHHHHHH
Confidence 99999875 454 3344556667888999999999999876 344321 23445567766666677
Q ss_pred HHHhccCcHHHHHHHHHHHH
Q 006615 581 KSLWKEGRRKEAAAVEERCE 600 (638)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~ 600 (638)
+.|...|+.++=..+-..|.
T Consensus 534 d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 534 DILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHH
Confidence 77777787777544444444
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=1.2e-09 Score=108.97 Aligned_cols=125 Identities=18% Similarity=0.099 Sum_probs=64.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHc
Q 006615 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK 492 (638)
Q Consensus 413 i~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 492 (638)
-..|.+.++++.|+-.|++..+-+.. +.+....+...+.+.|+.|+|+++++++.......+ ..---.+..+..
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~-----l~~~~~~~il~~ 569 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP-----LCKYHRASILFS 569 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc-----hhHHHHHHHHHh
Confidence 33445555555555555555443332 334444444455555555555555555443321111 112222334455
Q ss_pred cCChHHHHHHHHHHHhCCCCcc-hhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615 493 CKRDFDAINVLEEMIFSGIVPD-VQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545 (638)
Q Consensus 493 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~ 545 (638)
.++.++|++.++++++. .|+ ...|-.+.+.|.+.|+.+.|+.-|-.+.+..
T Consensus 570 ~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 570 LGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred hcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 66667777777776663 454 3345555566777777777766666666543
No 46
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=7e-09 Score=98.22 Aligned_cols=426 Identities=12% Similarity=0.064 Sum_probs=209.9
Q ss_pred HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCc----hHhHHHHHHH
Q 006615 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTL-HALATVLAKSQRNHELKTLIGDISSSKFLNV----SVNFMNLMQW 146 (638)
Q Consensus 72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~----~~~~~~ll~~ 146 (638)
+..-|.......+|+.-|+-+.+.. .-|+.-.. ..+-..+.+.+.+..|.+.++.....-...+ ....+.+--.
T Consensus 207 laqqy~~ndm~~ealntyeiivknk-mf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNK-MFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhccc-ccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 3445555667788888888777653 33443221 2234455677778888888776554321111 1234444456
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH------------HHHHH-
Q 006615 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSR------------TYTVM- 213 (638)
Q Consensus 147 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------------ty~~l- 213 (638)
+.+.|.+++|..-|+...+.. |+..+--.|+-++..-|+-++..+.|..|..-...||.. ..+--
T Consensus 286 fiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 778889999999998887764 666554444445555688888888888887643333322 22222
Q ss_pred ----HHHHHHcCC--HHHHHHHHHhcccCCCccCHhH-------------HHH--------HHHHHHccCCHHHHHHHHH
Q 006615 214 ----IEHLVNLGK--LDSALEVFSALPLMRIKRTSKQ-------------YLI--------LVEGFVGVERFDEAKSLLN 266 (638)
Q Consensus 214 ----i~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~-------------~~~--------li~~~~~~g~~~~A~~l~~ 266 (638)
++-+-+.+. .+++.-.-.++..--+.||-.. |.- -...|.+.|+++.|+++++
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 222222221 2222222222222222333210 100 1224667888888888887
Q ss_pred HHHhCCCCCCHHH--H-HHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCC
Q 006615 267 EMRDDGKFPGRAM--R-VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPW 343 (638)
Q Consensus 267 ~m~~~g~~p~~~~--~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (638)
-..+.+-...... . .++.-+.-..++..|.++-+.....++-...... +.+. ..
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~--------------nkgn---------~~ 500 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALT--------------NKGN---------IA 500 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhh--------------cCCc---------ee
Confidence 7765544433222 1 2232222233455555554433221110000000 0000 00
Q ss_pred CChhhHHHHhh------cCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCC-cCCHHHHHHHHHHH
Q 006615 344 LDPKALANTLD------EWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGY-THDVYALEKMLTIL 416 (638)
Q Consensus 344 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~ 416 (638)
+..+.+..+.. .....+... ..-++......|.+++|++.|-.+- ++ .-+......+...|
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ea---------lfniglt~e~~~~ldeald~f~klh---~il~nn~evl~qianiy 568 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEA---------LFNIGLTAEALGNLDEALDCFLKLH---AILLNNAEVLVQIANIY 568 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHH---------HHHhcccHHHhcCHHHHHHHHHHHH---HHHHhhHHHHHHHHHHH
Confidence 00000111110 001111111 1112333344566666666665431 11 12344455555566
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCCh
Q 006615 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496 (638)
Q Consensus 417 ~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 496 (638)
....+..+|.+++.+.... ++-|+.+.+.|.+.|-+.|+-..|++.+-+--+- -|....+..-|..-|....-+
T Consensus 569 e~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-----fp~nie~iewl~ayyidtqf~ 642 (840)
T KOG2003|consen 569 ELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-----FPCNIETIEWLAAYYIDTQFS 642 (840)
T ss_pred HHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-----cCcchHHHHHHHHHHHhhHHH
Confidence 6666666666665544322 2235566666666676777666666655442221 111123444455555666666
Q ss_pred HHHHHHHHHHHhCCCCcchhhHHHHHH-HHHccCCHHHHHHHHHHHHh
Q 006615 497 FDAINVLEEMIFSGIVPDVQTFSGLMY-HFALQGDEKIVQKLFSMVRQ 543 (638)
Q Consensus 497 ~~A~~l~~~m~~~g~~p~~~t~~~li~-~~~~~g~~~~a~~l~~~m~~ 543 (638)
++|+..|++..- ++|+..-|-.+|. ++.+.|++.+|.++++...+
T Consensus 643 ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 643 EKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 677777766543 4677777766664 34456777777777766655
No 47
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=3.1e-09 Score=100.56 Aligned_cols=396 Identities=11% Similarity=0.096 Sum_probs=244.2
Q ss_pred HHHHcCCChhHHHHHHHHHHc-CCCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhc
Q 006615 74 HALRSAPNADSALSIMEALKS-NPNFSHNQ--STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS 150 (638)
Q Consensus 74 ~~l~~~~~~~~Al~~~~~~~~-~~~~~~~~--~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~ 150 (638)
+.+.+.+++..|+++|+-... -|.+.-+. ...+.+--.+.+.|.++.|..-|++..+. .|+..+-..|+-++..-
T Consensus 245 ni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i 322 (840)
T KOG2003|consen 245 NIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAI 322 (840)
T ss_pred ceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheec
Confidence 345566778899999987663 23222221 12333434456789999999999988774 47766655566666677
Q ss_pred CCHHHHHHHHHHHHhcCC------------CCCHHhHHHHHH-----HHHhcC--ChHHHHHHHHHHHHcCCCCCHH---
Q 006615 151 GDLELVLSTWNEYRQRAK------------LLSTESYNIVMS-----VYAKTG--KNFEAVETFRQVIDEGAIPNSR--- 208 (638)
Q Consensus 151 g~~~~A~~l~~~m~~~~~------------~p~~~~~~~li~-----~~~~~g--~~~~A~~~~~~m~~~g~~p~~~--- 208 (638)
|+-++..+.|..|..-.. .|+....|.-|. -.-+.+ +-++++-.-..+..--+.|+-.
T Consensus 323 ~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~ 402 (840)
T KOG2003|consen 323 GDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGC 402 (840)
T ss_pred CcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhccc
Confidence 899999999998864321 223333332221 111111 1122222112222212222210
Q ss_pred --HHHH----------------HHHHHHHcCCHHHHHHHHHhcccCCCcc------------------------------
Q 006615 209 --TYTV----------------MIEHLVNLGKLDSALEVFSALPLMRIKR------------------------------ 240 (638)
Q Consensus 209 --ty~~----------------li~~~~~~g~~~~A~~~~~~m~~~g~~p------------------------------ 240 (638)
.... -..-+.+.|+++.|.+++.-..+..-+.
T Consensus 403 dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~a 482 (840)
T KOG2003|consen 403 DWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIA 482 (840)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHH
Confidence 0000 0123678888888877776554321110
Q ss_pred -CHhHHHHHH-----HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccc
Q 006615 241 -TSKQYLILV-----EGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314 (638)
Q Consensus 241 -~~~~~~~li-----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 314 (638)
+..-||.-. +....+|++++|.+.|++....+-.-....+++-..+...|++++|++.|-.+..
T Consensus 483 ln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~---------- 552 (840)
T KOG2003|consen 483 LNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHA---------- 552 (840)
T ss_pred hcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHH----------
Confidence 111111110 1112357888888888888766544444556666677888888888888765510
Q ss_pred cCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHH
Q 006615 315 EDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFC 394 (638)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 394 (638)
+......+ ..-++..+....+..+|++++.
T Consensus 553 --------------------------------------il~nn~ev------------l~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 553 --------------------------------------ILLNNAEV------------LVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred --------------------------------------HHHhhHHH------------HHHHHHHHHHhhCHHHHHHHHH
Confidence 00000000 0114455566677888888887
Q ss_pred HHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCC
Q 006615 395 WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI 474 (638)
Q Consensus 395 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 474 (638)
+. .+-++-|+...+.|...|-+.|+-.+|...+-+--.. ++.+..+..-|..-|....-+++|+.+|++.. .
T Consensus 583 q~--~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa-----l 654 (840)
T KOG2003|consen 583 QA--NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA-----L 654 (840)
T ss_pred Hh--cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH-----h
Confidence 64 3445567888999999999999999998887654332 34467777777777888888999999999865 3
Q ss_pred cchhHHHHHHHHHHHHH-ccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 006615 475 SKFKLMLLYSSLLRTLT-KCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542 (638)
Q Consensus 475 ~~~~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~ 542 (638)
.+|+. .-|..||..|. +.|++++|.++++..... ++-|..+...|++.+...|. .++.+.-+.+.
T Consensus 655 iqp~~-~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~~kle 720 (840)
T KOG2003|consen 655 IQPNQ-SKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYADKLE 720 (840)
T ss_pred cCccH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHHHHHH
Confidence 47775 78999887655 589999999999998764 56688899999999888885 34555554444
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=2.5e-09 Score=106.62 Aligned_cols=283 Identities=13% Similarity=0.044 Sum_probs=188.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHH-HHHH
Q 006615 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG--AIPNSRTYTVMIEHLVNLGKLD-SALE 228 (638)
Q Consensus 152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~ty~~li~~~~~~g~~~-~A~~ 228 (638)
+..+|...|+.+... +.-+.....-+..+|...+++++|.++|+..++.. ..-+..+|.+.+-.+-+.=.+. -|..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 345677777765543 22233444555666777777777777777776631 0115667777665443322211 1233
Q ss_pred HHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccc
Q 006615 229 VFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRI 308 (638)
Q Consensus 229 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 308 (638)
+.+.++ -...+|-++.++|.-.++.+.|++.|++..+.+ |+
T Consensus 413 Li~~~~-----~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~-------------------------------- 453 (638)
T KOG1126|consen 413 LIDTDP-----NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PR-------------------------------- 453 (638)
T ss_pred HHhhCC-----CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--Cc--------------------------------
Confidence 333332 244667777777777777777777777765532 21
Q ss_pred cccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhH
Q 006615 309 KNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPET 388 (638)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (638)
T Consensus 454 -------------------------------------------------------------------------------- 453 (638)
T KOG1126|consen 454 -------------------------------------------------------------------------------- 453 (638)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHcccCCHHHHHHHHH
Q 006615 389 AWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR---LIIDFYGISKKADAALKAFH 465 (638)
Q Consensus 389 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~---~li~~~~~~g~~~~A~~~~~ 465 (638)
...+|+-+-.-+.....+|+|...|+.... +|+..|+ .+...|.|.++++.|+-.|+
T Consensus 454 ----------------faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fq 513 (638)
T KOG1126|consen 454 ----------------FAYAYTLLGHESIATEEFDKAMKSFRKALG----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQ 513 (638)
T ss_pred ----------------cchhhhhcCChhhhhHHHHhHHHHHHhhhc----CCchhhHHHHhhhhheeccchhhHHHHHHH
Confidence 223333333344555667777777776553 3444444 45678999999999999999
Q ss_pred hchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615 466 DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545 (638)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~ 545 (638)
.+.+. .|...+....+...+-+.|+.++|++++++.....-+ |..+--.-...+...+++++|+..++++++.
T Consensus 514 kA~~I-----NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~- 586 (638)
T KOG1126|consen 514 KAVEI-----NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL- 586 (638)
T ss_pred hhhcC-----CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh-
Confidence 98865 4444577788888899999999999999999886433 4444444556667789999999999999974
Q ss_pred CCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615 546 VEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND 604 (638)
Q Consensus 546 ~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 604 (638)
.|+ +...|-.+...|.+.|+.+.|..-|..+.+.++
T Consensus 587 -vP~----------------------es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 587 -VPQ----------------------ESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred -Ccc----------------------hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 344 355678888999999999999999998887665
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=2.6e-07 Score=88.37 Aligned_cols=213 Identities=13% Similarity=0.014 Sum_probs=117.4
Q ss_pred HHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhH--HHHHHHHHhcCC
Q 006615 75 ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNF--MNLMQWYSTSGD 152 (638)
Q Consensus 75 ~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~--~~ll~~~~~~g~ 152 (638)
.+...|....|...|......-++ .-..|-.|...+ .+.+.+..+. . +.+.+.... --+..+|-....
T Consensus 173 v~k~~~~~s~A~~sfv~~v~~~P~--~W~AWleL~~li---t~~e~~~~l~----~-~l~~~~h~M~~~F~~~a~~el~q 242 (559)
T KOG1155|consen 173 VLKELGLLSLAIDSFVEVVNRYPW--FWSAWLELSELI---TDIEILSILV----V-GLPSDMHWMKKFFLKKAYQELHQ 242 (559)
T ss_pred HHHhhchHHHHHHHHHHHHhcCCc--chHHHHHHHHhh---chHHHHHHHH----h-cCcccchHHHHHHHHHHHHHHHH
Confidence 455677788888888877754222 222333333322 2222222221 1 111111111 124455666667
Q ss_pred HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHH-HHHH
Q 006615 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI--PNSRTYTVMIEHLVNLGKLDS-ALEV 229 (638)
Q Consensus 153 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~ty~~li~~~~~~g~~~~-A~~~ 229 (638)
.+++.+=.+.....|.+.+...-+-...+.-...+++.|..+|+++.+...- -|..+|..++-.--...++.- |..+
T Consensus 243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v 322 (559)
T KOG1155|consen 243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNV 322 (559)
T ss_pred HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 7778777777777776544444344444455667888888888888876211 167777776644333222222 2222
Q ss_pred HHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHh
Q 006615 230 FSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREM 302 (638)
Q Consensus 230 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~ 302 (638)
+. +. +--..|..++.+.|+-.++.++|...|++..+.+..-..++..+.+-|....+...|.+-++..
T Consensus 323 ~~-id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 323 SN-ID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HH-hc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 21 11 1223455566667777777777777777777766555555555566666666666666666554
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.23 E-value=5.1e-08 Score=88.83 Aligned_cols=291 Identities=13% Similarity=0.090 Sum_probs=170.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHh------HHHHHHHHHHccCCHH
Q 006615 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK------QYLILVEGFVGVERFD 259 (638)
Q Consensus 186 g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~~~li~~~~~~g~~~ 259 (638)
.+.++|.++|-+|.+... -+..+--+|-+.|-+.|..|.|.++.+.+.+ .||.. ..-.|..-|...|-+|
T Consensus 49 ~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~---spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE---SPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred cCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhc---CCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 567777777777776311 1333444666777777778888777777665 34432 2334555666777788
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCcccccccc
Q 006615 260 EAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQ 339 (638)
Q Consensus 260 ~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (638)
.|..+|..+.+.|.....+.-.++..|....+|++|++.-+++.+.+..+
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~------------------------------ 174 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT------------------------------ 174 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc------------------------------
Confidence 88888877777665555555667777777777777777665543211000
Q ss_pred ccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhc
Q 006615 340 LKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH 419 (638)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 419 (638)
.+ .-=...|+-+...+...
T Consensus 175 ------------------------------------------------------------~~-~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 175 ------------------------------------------------------------YR-VEIAQFYCELAQQALAS 193 (389)
T ss_pred ------------------------------------------------------------ch-hHHHHHHHHHHHHHhhh
Confidence 00 00122355566666666
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhH-HHHHHHHHHHHHccCChHH
Q 006615 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFD 498 (638)
Q Consensus 420 g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 498 (638)
.+++.|..++.+..+.+.+ ++..--.+.+.+...|+++.|.+.++.+.+. +|+. ..+-..|..+|.+.|+.++
T Consensus 194 ~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-----n~~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 194 SDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-----NPEYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred hhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-----ChHHHHHHHHHHHHHHHHhCCHHH
Confidence 7777788888777766543 2223234456667777777777777776654 2221 2455667777888888888
Q ss_pred HHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHH
Q 006615 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKEL 578 (638)
Q Consensus 499 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~ 578 (638)
....+.++.+.. ++...-+.+-.--....-.+.|...+.+-.+. .|+...+..
T Consensus 268 ~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r-------------------------~Pt~~gf~r 320 (389)
T COG2956 268 GLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR-------------------------KPTMRGFHR 320 (389)
T ss_pred HHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh-------------------------CCcHHHHHH
Confidence 888777777653 23333333333222233334444444433332 455555555
Q ss_pred HHHHHh---ccCcHHHHHHHHHHHHHccC
Q 006615 579 LKKSLW---KEGRRKEAAAVEERCEKIND 604 (638)
Q Consensus 579 li~~~~---~~g~~~~A~~~~~~~~~~~~ 604 (638)
|+..-. ..|...+-.-+++.|.....
T Consensus 321 l~~~~l~daeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 321 LMDYHLADAEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred HHHhhhccccccchhhhHHHHHHHHHHHH
Confidence 555433 34556677777777766544
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=6.8e-08 Score=88.05 Aligned_cols=286 Identities=13% Similarity=0.101 Sum_probs=184.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHcCCH
Q 006615 150 SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNS------RTYTVMIEHLVNLGKL 223 (638)
Q Consensus 150 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~ty~~li~~~~~~g~~ 223 (638)
..+.++|.++|-+|.+.+ +-+..+--+|-+.|-+.|..+.|+++-+.+.++ ||. ...-.|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 467788888888888754 334556667778888888888888888888775 442 2233455668888999
Q ss_pred HHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH----H-HHHHHHHHcCChHHHHHH
Q 006615 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM----R-VALERMQEMGFIQGANEF 298 (638)
Q Consensus 224 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~----~-~ll~~~~~~g~~~~a~~~ 298 (638)
|.|+++|..+.+.| +--....-.|+..|-...++++|+++-+++.+.+-.+...- | .+-..+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999998887644 22344567788889999999999999988888776665422 2 344444445556666665
Q ss_pred HHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHH
Q 006615 299 LREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCK 378 (638)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (638)
++.....+ +.
T Consensus 203 l~kAlqa~------------------------------------------------------------~~---------- 212 (389)
T COG2956 203 LKKALQAD------------------------------------------------------------KK---------- 212 (389)
T ss_pred HHHHHhhC------------------------------------------------------------cc----------
Confidence 55442110 00
Q ss_pred HHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHH
Q 006615 379 VLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458 (638)
Q Consensus 379 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 458 (638)
.+..--.+-+.....|+++.|.+.++...+.+...-+.+...|..+|...|+.+
T Consensus 213 --------------------------cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 213 --------------------------CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred --------------------------ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence 111112334456667777777777777777776666667777777888888888
Q ss_pred HHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHcc---CCHHHHH
Q 006615 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ---GDEKIVQ 535 (638)
Q Consensus 459 ~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~---g~~~~a~ 535 (638)
+....+..+.+.... ++ .-..+-..-....-.+.|...+.+-... +|+...+..||..-..- |...+-.
T Consensus 267 ~~~~fL~~~~~~~~g---~~---~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL 338 (389)
T COG2956 267 EGLNFLRRAMETNTG---AD---AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESL 338 (389)
T ss_pred HHHHHHHHHHHccCC---cc---HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhH
Confidence 877777776654221 11 2222222222334455666655555444 69999999999866543 4456666
Q ss_pred HHHHHHHhC
Q 006615 536 KLFSMVRQN 544 (638)
Q Consensus 536 ~l~~~m~~~ 544 (638)
-+++.|...
T Consensus 339 ~~lr~mvge 347 (389)
T COG2956 339 DLLRDMVGE 347 (389)
T ss_pred HHHHHHHHH
Confidence 667777654
No 52
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=5.7e-06 Score=79.59 Aligned_cols=404 Identities=8% Similarity=0.006 Sum_probs=249.0
Q ss_pred HHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHH
Q 006615 75 ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154 (638)
Q Consensus 75 ~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 154 (638)
.=.+......|..+|+.+...- -..| ..|-..+..--..|++..|+++|++..+ ..|+...|++.|+.=.+....+
T Consensus 116 ~Emknk~vNhARNv~dRAvt~l-PRVd-qlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeie 191 (677)
T KOG1915|consen 116 FEMKNKQVNHARNVWDRAVTIL-PRVD-QLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIE 191 (677)
T ss_pred HHHhhhhHhHHHHHHHHHHHhc-chHH-HHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHH
Confidence 3345566777777777666431 0111 2344444444556777777777776665 4677777777777777777777
Q ss_pred HHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 006615 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE-GA-IPNSRTYTVMIEHLVNLGKLDSALEVFSA 232 (638)
Q Consensus 155 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~-~p~~~ty~~li~~~~~~g~~~~A~~~~~~ 232 (638)
.|..++++..-. .|++.+|--...-=-++|++..|..+|+...+. |- ..+...|++....=.++..++.|.-+|.-
T Consensus 192 raR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iyky 269 (677)
T KOG1915|consen 192 RARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKY 269 (677)
T ss_pred HHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777653 367777776666666777777777777766653 10 01122233333333345556666666654
Q ss_pred cccCCCccC--HhHHHHHHHHHHccCCHHHHHHH--------HHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHh
Q 006615 233 LPLMRIKRT--SKQYLILVEGFVGVERFDEAKSL--------LNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREM 302 (638)
Q Consensus 233 m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~l--------~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~ 302 (638)
.... ++.+ ...|......--+.|+.....+. |+++.+.+.....+++..+..-...|+.+...++++..
T Consensus 270 Ald~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErA 348 (677)
T KOG1915|consen 270 ALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERA 348 (677)
T ss_pred HHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4432 1111 33454444444445554333322 44455555555556666666666678888887777765
Q ss_pred CcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhc
Q 006615 303 LPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRH 382 (638)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (638)
..+-... ..+. .-...-..|....+ ..--.
T Consensus 349 Ianvpp~-----------------------------------~ekr--------------~W~RYIYLWinYal-yeEle 378 (677)
T KOG1915|consen 349 IANVPPA-----------------------------------SEKR--------------YWRRYIYLWINYAL-YEELE 378 (677)
T ss_pred HccCCch-----------------------------------hHHH--------------HHHHHHHHHHHHHH-HHHHH
Confidence 4221100 0000 00011111211111 01113
Q ss_pred cCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHH
Q 006615 383 FKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILA----RHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKAD 458 (638)
Q Consensus 383 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 458 (638)
..+.+.+.++|+.... -+++..+||..+--.|+ ++.++..|.+++...+ |..|-..+|...|..=.+.+.+|
T Consensus 379 ~ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efD 454 (677)
T KOG1915|consen 379 AEDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFD 454 (677)
T ss_pred hhhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHH
Confidence 5778888899987754 44556667766655554 5678999999988776 67788899999999889999999
Q ss_pred HHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCC-CCcchhhHHHHHHHHHccCCHHHHHHH
Q 006615 459 AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSG-IVPDVQTFSGLMYHFALQGDEKIVQKL 537 (638)
Q Consensus 459 ~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~a~~l 537 (638)
.+..+++...+- .|..-.+|.-....=...|+.+.|..+|+-.+.+. +......|-+.|.-=...|.++.|..+
T Consensus 455 RcRkLYEkfle~-----~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~L 529 (677)
T KOG1915|consen 455 RCRKLYEKFLEF-----SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARAL 529 (677)
T ss_pred HHHHHHHHHHhc-----ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHH
Confidence 999999987764 34434778877777778899999999999988742 122344555556655678999999999
Q ss_pred HHHHHhC
Q 006615 538 FSMVRQN 544 (638)
Q Consensus 538 ~~~m~~~ 544 (638)
++.+.+.
T Consensus 530 YerlL~r 536 (677)
T KOG1915|consen 530 YERLLDR 536 (677)
T ss_pred HHHHHHh
Confidence 9999875
No 53
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.18 E-value=7.2e-06 Score=81.89 Aligned_cols=473 Identities=12% Similarity=0.104 Sum_probs=265.8
Q ss_pred HHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCC
Q 006615 73 THALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD 152 (638)
Q Consensus 73 ~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 152 (638)
+..+...|+.......|+.....-++.--...|...++.....+-++.+.+++++.++. .| ..-+--+..+++.++
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~eeyie~L~~~d~ 184 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREEYIEYLAKSDR 184 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHHHHHHHHhccc
Confidence 34555677777777777766543223222336777777777777777777887777763 22 224556777777777
Q ss_pred HHHHHHHHHHHHhcC------CC------------------------------------CC--HHhHHHHHHHHHhcCCh
Q 006615 153 LELVLSTWNEYRQRA------KL------------------------------------LS--TESYNIVMSVYAKTGKN 188 (638)
Q Consensus 153 ~~~A~~l~~~m~~~~------~~------------------------------------p~--~~~~~~li~~~~~~g~~ 188 (638)
+++|.+.+....... -+ +| ...|++|.+-|.+.|.+
T Consensus 185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ 264 (835)
T KOG2047|consen 185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLF 264 (835)
T ss_pred hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhh
Confidence 777776665543211 01 11 12477777777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------------------HHHHHHHHHhcccCC-C-------
Q 006615 189 FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK----------------------LDSALEVFSALPLMR-I------- 238 (638)
Q Consensus 189 ~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~----------------------~~~A~~~~~~m~~~g-~------- 238 (638)
++|..+|++-... ..+..-|+.+.++|+.... ++-...-|+.+...+ +
T Consensus 265 ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 265 EKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred HHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 7777777776663 2345556666666653221 111112222221110 0
Q ss_pred ---ccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-------CHHHHHHHHHHHHcCChHHHHHHHHHhCcCccc
Q 006615 239 ---KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP-------GRAMRVALERMQEMGFIQGANEFLREMLPDKRI 308 (638)
Q Consensus 239 ---~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 308 (638)
.-++..|..-+ -+..|+..+....|.+..+. +.| ...+.....-|-..|+++.|..+|++..+-...
T Consensus 343 RQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred hcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 01122222221 12245666667777776542 222 223346667788889999999999876432211
Q ss_pred cccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhH
Q 006615 309 KNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPET 388 (638)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (638)
.- ..+.. +| ...+.+-.....++.
T Consensus 420 ~v------------------------------------~dLa~------------------vw--~~waemElrh~~~~~ 443 (835)
T KOG2047|consen 420 TV------------------------------------EDLAE------------------VW--CAWAEMELRHENFEA 443 (835)
T ss_pred ch------------------------------------HHHHH------------------HH--HHHHHHHHhhhhHHH
Confidence 00 00000 01 011222223445555
Q ss_pred HHHHHHHHhcCCC----------C------cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Q 006615 389 AWHFFCWVAYQPG----------Y------THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYG 452 (638)
Q Consensus 389 a~~~~~~~~~~~~----------~------~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~ 452 (638)
|+.+......-+. . .-+...|+..++.--..|-++....+++.+.+..+. ++.........+-
T Consensus 444 Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLE 522 (835)
T KOG2047|consen 444 ALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLE 522 (835)
T ss_pred HHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Confidence 5555544322110 0 113445666777777788999999999999988765 3332222222233
Q ss_pred ccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHc---cCChHHHHHHHHHHHhCCCCcchhhHHHHHHHH--Hc
Q 006615 453 ISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK---CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF--AL 527 (638)
Q Consensus 453 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~--~~ 527 (638)
...-+++++++|++-... .+.|+.-..|+.-+.-+.+ ...++.|..+|++..+ |++|...-+--|+-+= -+
T Consensus 523 eh~yfeesFk~YErgI~L---Fk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe 598 (835)
T KOG2047|consen 523 EHKYFEESFKAYERGISL---FKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEE 598 (835)
T ss_pred hhHHHHHHHHHHHcCCcc---CCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHH
Confidence 455689999999986665 3456666789888877765 3468999999999998 7777654333333222 24
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHHH----------hhhCCCCCCHHHH---HHHHHHHhccCcHHHH
Q 006615 528 QGDEKIVQKLFSMVRQNGVEPD--AYMFKVLIQAYCKY----------LSNSNLMPDAATK---ELLKKSLWKEGRRKEA 592 (638)
Q Consensus 528 ~g~~~~a~~l~~~m~~~~~~p~--~~~~~~li~~~~~~----------m~~~g~~p~~~~~---~~li~~~~~~g~~~~A 592 (638)
.|-...|+.++++... ++.+. ...||..|.--... -+.-..-||...- -...+.=++.|.+++|
T Consensus 599 ~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRA 677 (835)
T KOG2047|consen 599 HGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRA 677 (835)
T ss_pred hhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHH
Confidence 5778889999998665 34443 33455544333222 1111223443221 2223334678999999
Q ss_pred HHHHHHHHHccCCCCcccccceeeeec
Q 006615 593 AAVEERCEKINDVPSLALRGHIWAVSS 619 (638)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~w~~~~ 619 (638)
..++....+. .+| ..++..|.+.+
T Consensus 678 RaIya~~sq~--~dP-r~~~~fW~twk 701 (835)
T KOG2047|consen 678 RAIYAHGSQI--CDP-RVTTEFWDTWK 701 (835)
T ss_pred HHHHHhhhhc--CCC-cCChHHHHHHH
Confidence 9999886663 223 44555666543
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.17 E-value=2.1e-07 Score=87.61 Aligned_cols=194 Identities=7% Similarity=0.076 Sum_probs=119.2
Q ss_pred CCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHH
Q 006615 79 APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLS 158 (638)
Q Consensus 79 ~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 158 (638)
.|++..|.+......+. +-.|- ..|-.-..+....|+.+.+-+.+.+..+..-.++...+-+..+.....|+.+.|..
T Consensus 97 eG~~~qAEkl~~rnae~-~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH-GEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhc-CcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 46777777777665433 22222 13444444455667777777777777665334455555566666777777777777
Q ss_pred HHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 006615 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN-------SRTYTVMIEHLVNLGKLDSALEVFS 231 (638)
Q Consensus 159 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~ty~~li~~~~~~g~~~~A~~~~~ 231 (638)
-.+++.+.+ +.+.........+|.+.|++.....++..|.+.|+--| ..+|+.+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 777766654 33466677777777777777777777777777665433 2355666665555555555555666
Q ss_pred hcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 006615 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276 (638)
Q Consensus 232 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 276 (638)
..+.. .+.+...-.+++.-+.++|+.++|.++..+..+.+..|.
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 55532 233455556666667777777777777777766665554
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.4e-07 Score=90.81 Aligned_cols=210 Identities=15% Similarity=0.025 Sum_probs=158.1
Q ss_pred ccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHH
Q 006615 382 HFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL 461 (638)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 461 (638)
..|+...|.+-|+.......-.+ ..|--+...|....+.++....|++..+.+.. |+.+|..-.+.+.-.+++++|.
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~--~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFN--SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccc--hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 36888888888888764432222 22777778899999999999999999887755 6778888888888889999999
Q ss_pred HHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHH
Q 006615 462 KAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541 (638)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m 541 (638)
.=|++.... .|+.+..|-.+..+..+.+++++++..|++.++. ++--...||.....+...+++++|.+.|+..
T Consensus 415 aDF~Kai~L-----~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 415 ADFQKAISL-----DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHhhc-----ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 999998865 6776788888888888999999999999999986 3445678999999999999999999999988
Q ss_pred HhCCCCCC-------Hhh--HHHHHHHHHHH-------hh--hCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 006615 542 RQNGVEPD-------AYM--FKVLIQAYCKY-------LS--NSNLMPD-AATKELLKKSLWKEGRRKEAAAVEERCEKI 602 (638)
Q Consensus 542 ~~~~~~p~-------~~~--~~~li~~~~~~-------m~--~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (638)
++. .|+ ..+ --+++..-=+. +. ...+.|- ...|..|.......|++++|+++|++....
T Consensus 489 i~L--E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 489 IEL--EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred Hhh--ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 863 232 111 11111100000 22 2344443 456888999999999999999999986543
No 56
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=1.7e-06 Score=83.01 Aligned_cols=436 Identities=10% Similarity=0.044 Sum_probs=252.7
Q ss_pred CCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCch-HhHHHHHHHHHhcCCHHHHH
Q 006615 79 APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVS-VNFMNLMQWYSTSGDLELVL 157 (638)
Q Consensus 79 ~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~ 157 (638)
.+++..|.++|+.+.... ..+...|-..+..-.+...+..|+.++++.... .|.+ ..|--.+.+=-..|++..|.
T Consensus 86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHH
Confidence 345666777777776543 223335656666666777777777777776653 2222 22444444445567777777
Q ss_pred HHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC-
Q 006615 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM- 236 (638)
Q Consensus 158 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~- 236 (638)
++|++-.+ ..|+..+|++.|+-=.+.+.++.|..+|++.+- +.|++.+|---.+.=.+.|...-|.++|+...+.
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 77777665 457777777777777777777777777777765 3477777777666667777777777777765541
Q ss_pred CC-ccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHH-HcCChHHHHHHH---HHhCcCccc
Q 006615 237 RI-KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM---RVALERMQ-EMGFIQGANEFL---REMLPDKRI 308 (638)
Q Consensus 237 g~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~---~~ll~~~~-~~g~~~~a~~~~---~~~~~~~~~ 308 (638)
|- .-+...+.+....-.++..++.|.-+|+-..+. .|...+ +.-...+- +-|+.....+.+ +.++
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q----- 310 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ----- 310 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH-----
Confidence 10 011222333333333455666666666655443 232222 21111121 223322222211 0110
Q ss_pred cccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccc-hHHHHHHHhccCChh
Q 006615 309 KNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWT-TRLVCKVLRHFKSPE 387 (638)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 387 (638)
--..+..++..+. -.....+....|+.+
T Consensus 311 ---------------------------------------------------YE~~v~~np~nYDsWfdylrL~e~~g~~~ 339 (677)
T KOG1915|consen 311 ---------------------------------------------------YEKEVSKNPYNYDSWFDYLRLEESVGDKD 339 (677)
T ss_pred ---------------------------------------------------HHHHHHhCCCCchHHHHHHHHHHhcCCHH
Confidence 0001111111111 111233344457777
Q ss_pred HHHHHHHHHhcCCCCcCCHH--HHHHHH----H-HH---HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc----c
Q 006615 388 TAWHFFCWVAYQPGYTHDVY--ALEKML----T-IL---ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYG----I 453 (638)
Q Consensus 388 ~a~~~~~~~~~~~~~~p~~~--~~~~li----~-~~---~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~----~ 453 (638)
...++|+... .+++|-.. .|.-.| . +| ....+++.+.++++...+ =++-...||..+=-+|+ +
T Consensus 340 ~Ire~yErAI--anvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIR 416 (677)
T KOG1915|consen 340 RIRETYERAI--ANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIR 416 (677)
T ss_pred HHHHHHHHHH--ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHH
Confidence 7888887764 33344221 122111 1 11 234677777778777766 23334466665544444 4
Q ss_pred cCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHH
Q 006615 454 SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI 533 (638)
Q Consensus 454 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 533 (638)
+.++..|.+++...... .|.. .+|-.-|..=.+.+.++.+..++++.++-+ +-|..+|.-...-=...|+.+.
T Consensus 417 q~~l~~ARkiLG~AIG~-----cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdR 489 (677)
T KOG1915|consen 417 QLNLTGARKILGNAIGK-----CPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDR 489 (677)
T ss_pred HcccHHHHHHHHHHhcc-----CCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHH
Confidence 66777888887776544 2222 567777777778888888888888888764 2366777776666667788888
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCcccccc
Q 006615 534 VQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGH 613 (638)
Q Consensus 534 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 613 (638)
|..+|+-.++.. . +..-...|.+.|+-=...|.++.|..+++++.+... ...
T Consensus 490 aRaifelAi~qp---~-------------------ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~------h~k 541 (677)
T KOG1915|consen 490 ARAIFELAISQP---A-------------------LDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ------HVK 541 (677)
T ss_pred HHHHHHHHhcCc---c-------------------cccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc------cch
Confidence 888888777632 1 122345677777777899999999999999988654 444
Q ss_pred eeeee
Q 006615 614 IWAVS 618 (638)
Q Consensus 614 ~w~~~ 618 (638)
.|..+
T Consensus 542 vWisF 546 (677)
T KOG1915|consen 542 VWISF 546 (677)
T ss_pred HHHhH
Confidence 77764
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.11 E-value=5.9e-08 Score=91.05 Aligned_cols=197 Identities=14% Similarity=0.162 Sum_probs=125.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 006615 102 QSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181 (638)
Q Consensus 102 ~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 181 (638)
...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.+++..+.+ +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3455666666677777777777777666542 3344556666777777777777777777776653 3345566666777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHH
Q 006615 182 YAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260 (638)
Q Consensus 182 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 260 (638)
+...|++++|.+.|++.......| ....+..+...+...|++++|.+.|++..+.. ..+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 777777777777777776542222 33455556666777777777777777766532 2234566667777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHH-HHHHHHHHHcCChHHHHHHHHHh
Q 006615 261 AKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302 (638)
Q Consensus 261 A~~l~~~m~~~g~~p~~~~-~~ll~~~~~~g~~~~a~~~~~~~ 302 (638)
|...+++..... ..+... ......+...|+.++|..+.+.+
T Consensus 188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 777777776652 122222 24455666777777777766655
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.07 E-value=8e-08 Score=90.12 Aligned_cols=196 Identities=9% Similarity=0.027 Sum_probs=159.9
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHh
Q 006615 70 FIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYST 149 (638)
Q Consensus 70 ~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~ 149 (638)
..+...+...|++++|+..|+.+.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 35 ~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 35 VQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 335678889999999999999987653 2345577888888999999999999999988754 3455667888899999
Q ss_pred cCCHHHHHHHHHHHHhcCC-CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006615 150 SGDLELVLSTWNEYRQRAK-LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALE 228 (638)
Q Consensus 150 ~g~~~~A~~l~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 228 (638)
.|++++|...|++...... ......+..+...+...|++++|...|++..+... .+...+..+...+...|++++|.+
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999986532 22355677788889999999999999999988532 256788889999999999999999
Q ss_pred HHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615 229 VFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270 (638)
Q Consensus 229 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 270 (638)
.+++..+. ...+...+..+...+...|+.++|..+.+.+..
T Consensus 191 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 191 YLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99998775 234567777888889999999999999888754
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.07 E-value=8.7e-08 Score=101.47 Aligned_cols=266 Identities=14% Similarity=0.045 Sum_probs=154.2
Q ss_pred CCHHhHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH---------HcCCHHHHHHHHHhcc
Q 006615 170 LSTESYNIVMSVYAK-----TGKNFEAVETFRQVIDEGAIPN-SRTYTVMIEHLV---------NLGKLDSALEVFSALP 234 (638)
Q Consensus 170 p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~---------~~g~~~~A~~~~~~m~ 234 (638)
.+...|...+.+... .+.+++|.++|++..+. .|+ ...|..+..+|. ..+++++|...+++..
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 445555555555321 23567777777777763 443 344444443332 2234677777777776
Q ss_pred cCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccc
Q 006615 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314 (638)
Q Consensus 235 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 314 (638)
+.. +-+...|..+...+...|++++|...|++..+.+.......+.+...+...|++++|...+++....
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--------- 401 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--------- 401 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------
Confidence 643 2256667777777777788888888888777654332233445556667777777777777665311
Q ss_pred cCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHH
Q 006615 315 EDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFC 394 (638)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 394 (638)
T Consensus 402 -------------------------------------------------------------------------------- 401 (553)
T PRK12370 402 -------------------------------------------------------------------------------- 401 (553)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCC
Q 006615 395 WVAYQPGYTHD-VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGP 473 (638)
Q Consensus 395 ~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 473 (638)
.|+ ...+..++..+...|++++|...+++......+-+...+..+..+|...|+.++|...+.++...
T Consensus 402 --------~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--- 470 (553)
T PRK12370 402 --------DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--- 470 (553)
T ss_pred --------CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---
Confidence 111 11222233345557788888888887765542224445666677777888888888888776543
Q ss_pred CcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhC-CCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615 474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS-GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545 (638)
Q Consensus 474 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~ 545 (638)
.|+.....+.+...|+..| ++|...++.+.+. +-.|....+..+ .+.-.|+-+.+... +++.+.|
T Consensus 471 --~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 471 --EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred --cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhhhHHHHHH-HHhhccc
Confidence 2232345666666777777 4777777766552 123333333333 33445555555444 7777654
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.05 E-value=8.1e-08 Score=101.73 Aligned_cols=144 Identities=12% Similarity=0.040 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006615 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFS 231 (638)
Q Consensus 153 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~ 231 (638)
+++|...+++..+.+ +-+..+|..+...+...|++++|...|++..+.+ | +...+..+...+...|++++|...++
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 455555555555543 2344455555555555555555555555555532 3 23444455555555555555555555
Q ss_pred hcccCCCccCH-hHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HH-HHHHHHHHHcCChHHHHHHHHHh
Q 006615 232 ALPLMRIKRTS-KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AM-RVALERMQEMGFIQGANEFLREM 302 (638)
Q Consensus 232 ~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~-~~ll~~~~~~g~~~~a~~~~~~~ 302 (638)
+..+. .|+. ..+..+...+...|++++|...+++..... .|+. .. ..+...+...|+.++|...+.++
T Consensus 397 ~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 397 ECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 55443 2321 122223333444555555555555554332 1211 11 23334445555555555555544
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=5.2e-06 Score=81.82 Aligned_cols=425 Identities=12% Similarity=0.039 Sum_probs=277.2
Q ss_pred CCCCHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHH----HHh---------C
Q 006615 65 RLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGD----ISS---------S 131 (638)
Q Consensus 65 ~~~~~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~----~~~---------~ 131 (638)
.+.+.+.+..+|.-.|.+++|..+...-.- ..-|..........+.+...++.+..++.. ... .
T Consensus 48 dp~d~~~~aq~l~~~~~y~ra~~lit~~~l---e~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~ 124 (611)
T KOG1173|consen 48 DPADIYWLAQVLYLGRQYERAAHLITTYKL---EKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAAN 124 (611)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHhhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhc
Confidence 455667788999999999998888775531 234555677777788888999999888872 110 0
Q ss_pred CCCCchHh----HHH-----H--HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHH---HHHHh-------------
Q 006615 132 KFLNVSVN----FMN-----L--MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM---SVYAK------------- 184 (638)
Q Consensus 132 ~~~~~~~~----~~~-----l--l~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li---~~~~~------------- 184 (638)
-+.+|..- -+. . -..|....+.++|...|.+....+ +..|..+. .+..-
T Consensus 125 ~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D----~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~ 200 (611)
T KOG1173|consen 125 TLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLAD----AKCFEAFEKLVSAHMLTAQEEFELLESLD 200 (611)
T ss_pred eeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcc----hhhHHHHHHHHHHHhcchhHHHHHHhccc
Confidence 01111110 001 1 123444456677777776655443 33333322 21111
Q ss_pred ----cCChHHHHHHHHHHH-----H------------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHh
Q 006615 185 ----TGKNFEAVETFRQVI-----D------------EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSK 243 (638)
Q Consensus 185 ----~g~~~~A~~~~~~m~-----~------------~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 243 (638)
.+.-.+-++.+-+.. . .|+.-+......-..-|-..+++.+..++++...+.. ++...
T Consensus 201 ~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~ 279 (611)
T KOG1173|consen 201 LAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLP 279 (611)
T ss_pred HHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcc
Confidence 011111111111111 0 0111122223333344566788888888888877643 45666
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccc
Q 006615 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDED 323 (638)
Q Consensus 244 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (638)
++-.=|.++...|+..+-..+=.++.+.-..-...|+++.--|...|+..+|.+.|..-..
T Consensus 280 ~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~------------------- 340 (611)
T KOG1173|consen 280 CLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATT------------------- 340 (611)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhh-------------------
Confidence 6777778888889888888888888776655555677777777777999999999876521
Q ss_pred cccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCc
Q 006615 324 ENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYT 403 (638)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 403 (638)
.++.+......++..+...+..++|+..+....+--.-.
T Consensus 341 -----------------------------------------lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~ 379 (611)
T KOG1173|consen 341 -----------------------------------------LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC 379 (611)
T ss_pred -----------------------------------------cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC
Confidence 123344445567778888889999887776654322111
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCc--chhHHH
Q 006615 404 HDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS--KFKLML 481 (638)
Q Consensus 404 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ 481 (638)
.-+..|. -.-|.+.+.++.|.++|.+.....+ -|+...+-+.-.....+.+.+|..+|+...+...... .+....
T Consensus 380 hlP~LYl--gmey~~t~n~kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p 456 (611)
T KOG1173|consen 380 HLPSLYL--GMEYMRTNNLKLAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEP 456 (611)
T ss_pred cchHHHH--HHHHHHhccHHHHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhH
Confidence 2233333 3357889999999999998775432 2667788887777888999999999998663211111 111235
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 006615 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561 (638)
Q Consensus 482 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~ 561 (638)
+++.|...|.+.++.++|+..|+...... +-|..++.++--.|...|+++.|.+.|.+... +.||..+-..++..+.
T Consensus 457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 457 TLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 78999999999999999999999988753 34788999999999999999999999998875 6899888888887766
Q ss_pred HH
Q 006615 562 KY 563 (638)
Q Consensus 562 ~~ 563 (638)
..
T Consensus 534 e~ 535 (611)
T KOG1173|consen 534 ED 535 (611)
T ss_pred Hh
Confidence 65
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.03 E-value=3.4e-07 Score=92.48 Aligned_cols=247 Identities=18% Similarity=0.145 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcccC-----CC-ccCHh-HHHHHHHHHHccCCHHHHHHHHHHHHhC-----C-C
Q 006615 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLM-----RI-KRTSK-QYLILVEGFVGVERFDEAKSLLNEMRDD-----G-K 273 (638)
Q Consensus 207 ~~ty~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~ 273 (638)
..|...+...|...|+++.|..++....+. |. .|.+. ..+.+-..|...+++++|..+|+++..- | .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666888999999999999999876542 21 23333 2345667888999999999999998542 2 2
Q ss_pred CCCHHH-H-HHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHH
Q 006615 274 FPGRAM-R-VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALAN 351 (638)
Q Consensus 274 ~p~~~~-~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (638)
.|...+ + ++-..|.+.|++++|...+++..
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al------------------------------------------------ 310 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERAL------------------------------------------------ 310 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHH------------------------------------------------
Confidence 233322 2 66678999999999999887652
Q ss_pred HhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHH-HHHHHHHHHHhcCChHHHHHHHH
Q 006615 352 TLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY-ALEKMLTILARHGHVELVDRLIA 430 (638)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~l~~ 430 (638)
+++.+... ...|.+. .++.+...|+..+++++|..+++
T Consensus 311 ---------------------------------------~I~~~~~~--~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q 349 (508)
T KOG1840|consen 311 ---------------------------------------EIYEKLLG--ASHPEVAAQLSELAAILQSMNEYEEAKKLLQ 349 (508)
T ss_pred ---------------------------------------HHHHHhhc--cChHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 22222100 1122222 36677788899999999999988
Q ss_pred HHHHc---CCCC----CHHHHHHHHHHHcccCCHHHHHHHHHhchhcc---CCCcchhHHHHHHHHHHHHHccCChHHHH
Q 006615 431 KLRSD---GMRL----PFSTIRLIIDFYGISKKADAALKAFHDDRTLC---GPISKFKLMLLYSSLLRTLTKCKRDFDAI 500 (638)
Q Consensus 431 ~m~~~---g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 500 (638)
+..+. -+.+ -..+++.|-..|.+.|++++|..+|+++.+.. .....+......+.|...|.+.+..++|.
T Consensus 350 ~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~ 429 (508)
T KOG1840|consen 350 KALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAE 429 (508)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHH
Confidence 65421 1222 23678899999999999999999999876543 11122333467888999999999999999
Q ss_pred HHHHHHHh----CCC-Ccc-hhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 006615 501 NVLEEMIF----SGI-VPD-VQTFSGLMYHFALQGDEKIVQKLFSMVR 542 (638)
Q Consensus 501 ~l~~~m~~----~g~-~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~ 542 (638)
++|.+... .|. .|+ ..+|..|...|...|++++|.++.+.+.
T Consensus 430 ~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 430 QLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 99987543 332 233 4679999999999999999999998766
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.01 E-value=2.6e-07 Score=93.28 Aligned_cols=175 Identities=14% Similarity=0.143 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHH---c--CCC-CCH-HHHHHHHHHHcccCCHHHHHHHHHhchhccC---CCc
Q 006615 406 VYALEKMLTILARHGHVELVDRLIAKLRS---D--GMR-LPF-STIRLIIDFYGISKKADAALKAFHDDRTLCG---PIS 475 (638)
Q Consensus 406 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~--g~~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~ 475 (638)
..+++.|-.+|++.|++++|...++...+ + |.. |.. ..++.+...|+..+++++|..+++...+... ...
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~ 362 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED 362 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence 34688888899999999998888876542 2 222 222 3456677788999999999999987655432 223
Q ss_pred chhHHHHHHHHHHHHHccCChHHHHHHHHHHHhC-----C-CCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhC--CC
Q 006615 476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS-----G-IVP-DVQTFSGLMYHFALQGDEKIVQKLFSMVRQN--GV 546 (638)
Q Consensus 476 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~--~~ 546 (638)
.+....+++.|...|.+.|++++|.++|++.+.. | ..+ ....++.|-..|.+.+++.+|.++|.+...- -+
T Consensus 363 ~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~ 442 (508)
T KOG1840|consen 363 NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLC 442 (508)
T ss_pred chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHh
Confidence 3455789999999999999999999999987652 1 122 2456788889999999999999999875532 12
Q ss_pred CCCHhhHHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 006615 547 EPDAYMFKVLIQAYCKYLSNSNLMPD-AATKELLKKSLWKEGRRKEAAAVEERCE 600 (638)
Q Consensus 547 ~p~~~~~~~li~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 600 (638)
.|+ .|+ ..+|..|...|.+.|++|.|+++.+...
T Consensus 443 g~~--------------------~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 443 GPD--------------------HPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCC--------------------CCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 233 344 5678999999999999999999998877
No 64
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.99 E-value=5.7e-05 Score=75.91 Aligned_cols=393 Identities=12% Similarity=0.074 Sum_probs=242.1
Q ss_pred HHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHH
Q 006615 75 ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154 (638)
Q Consensus 75 ~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 154 (638)
.|...|+-++|....+...+.. .-+.+.|+.+.-......++++|.+.|....+-+ +.|...+.-|--.-++.|+++
T Consensus 50 ~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~ 126 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYE 126 (700)
T ss_pred hhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhh
Confidence 4667789999999998877653 2344467777666677789999999999888743 345566666666667888999
Q ss_pred HHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHH------HHHHHcCCHHHHH
Q 006615 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG-AIPNSRTYTVMI------EHLVNLGKLDSAL 227 (638)
Q Consensus 155 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~ty~~li------~~~~~~g~~~~A~ 227 (638)
.......++.+.. +.....|..+.-++.-.|+...|..++++..+.. -.|+...|.-.. ....+.|..++|.
T Consensus 127 ~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~al 205 (700)
T KOG1156|consen 127 GYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKAL 205 (700)
T ss_pred hHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 8888888877753 3346678899999999999999999999998864 246666665433 2356788888888
Q ss_pred HHHHhcccCCCccCHhHH-HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHH-HcCChHHHHHHHHHhC
Q 006615 228 EVFSALPLMRIKRTSKQY-LILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR--VALERMQ-EMGFIQGANEFLREML 303 (638)
Q Consensus 228 ~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~--~ll~~~~-~~g~~~~a~~~~~~~~ 303 (638)
+.+...... ..|-..+ .+-...+.+.+++++|..+|..+.... ||..-| .+..++. -.+..+....++....
T Consensus 206 e~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls 281 (700)
T KOG1156|consen 206 EHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILS 281 (700)
T ss_pred HHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 877665432 1233333 445577888999999999999998754 666543 3445554 3333333335665553
Q ss_pred cCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhcc
Q 006615 304 PDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHF 383 (638)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (638)
..-........ + .-..+..
T Consensus 282 ~~y~r~e~p~R-----------------------------------------l-------------------plsvl~~- 300 (700)
T KOG1156|consen 282 EKYPRHECPRR-----------------------------------------L-------------------PLSVLNG- 300 (700)
T ss_pred hcCcccccchh-----------------------------------------c-------------------cHHHhCc-
Confidence 22111111000 0 0000001
Q ss_pred CChhHH-HHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHH----HHHHHHHcC----------CCCCHH--HHHH
Q 006615 384 KSPETA-WHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDR----LIAKLRSDG----------MRLPFS--TIRL 446 (638)
Q Consensus 384 ~~~~~a-~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~----l~~~m~~~g----------~~~~~~--~~~~ 446 (638)
..+.+. -+++... .+.|+++ ++..+...|-.-...+-..+ +...+...| -.|+.. ++-.
T Consensus 301 eel~~~vdkyL~~~-l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~ 376 (700)
T KOG1156|consen 301 EELKEIVDKYLRPL-LSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYF 376 (700)
T ss_pred chhHHHHHHHHHHH-hhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHH
Confidence 111111 1222222 2333332 22222222222111111111 111111111 134443 3445
Q ss_pred HHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Q 006615 447 IIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526 (638)
Q Consensus 447 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 526 (638)
+++.|-+.|+++.|..+++..... .|..+..|-.=...+...|.+++|...+++..+.. .||...=.--.....
T Consensus 377 laqh~D~~g~~~~A~~yId~AIdH-----TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmL 450 (700)
T KOG1156|consen 377 LAQHYDKLGDYEVALEYIDLAIDH-----TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYML 450 (700)
T ss_pred HHHHHHHcccHHHHHHHHHHHhcc-----CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHH
Confidence 667788889999999998887654 45545566666677888899999999999888754 345544445566667
Q ss_pred ccCCHHHHHHHHHHHHhCCC
Q 006615 527 LQGDEKIVQKLFSMVRQNGV 546 (638)
Q Consensus 527 ~~g~~~~a~~l~~~m~~~~~ 546 (638)
+..+.++|.++.....+.|.
T Consensus 451 rAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 451 RANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HccccHHHHHHHHHhhhccc
Confidence 78888999998888888775
No 65
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=3.5e-06 Score=81.41 Aligned_cols=79 Identities=6% Similarity=-0.085 Sum_probs=54.6
Q ss_pred HHHHcCCChhHHHHHHHHHHcCCCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc-hHhHHHHHHHHHhcC
Q 006615 74 HALRSAPNADSALSIMEALKSNPNFSHN-QSTLHALATVLAKSQRNHELKTLIGDISSSKFLNV-SVNFMNLMQWYSTSG 151 (638)
Q Consensus 74 ~~l~~~~~~~~Al~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~-~~~~~~ll~~~~~~g 151 (638)
+-+-+.|++++|++.|.+.... .|+ +.-|.....+|...|+|+...+--....+. .|+ +-.+..-..++-..|
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhc
Confidence 4455778999999999999954 466 556788888888999999887766655553 233 223444445566667
Q ss_pred CHHHHH
Q 006615 152 DLELVL 157 (638)
Q Consensus 152 ~~~~A~ 157 (638)
++++|+
T Consensus 198 ~~~eal 203 (606)
T KOG0547|consen 198 KFDEAL 203 (606)
T ss_pred cHHHHH
Confidence 766664
No 66
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=1.7e-05 Score=73.51 Aligned_cols=441 Identities=12% Similarity=0.050 Sum_probs=243.3
Q ss_pred HHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHH-HHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615 73 THALRSAPNADSALSIMEALKSNPNFSHNQSTLHALA-TVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG 151 (638)
Q Consensus 73 ~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li-~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g 151 (638)
+.-+....++..|+.+++.-...+. . .....+..| ..+.+.|++++|...+.-+.... .++...+-.|...+.-.|
T Consensus 29 Ledfls~rDytGAislLefk~~~~~-E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR-E-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch-h-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHH
Confidence 4556667888899998887663321 1 112344444 44467899999999998877643 355555666777777788
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHhHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006615 152 DLELVLSTWNEYRQRAKLLSTESYNIV-MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230 (638)
Q Consensus 152 ~~~~A~~l~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~ 230 (638)
.+.+|..+-.... +....+-| ...--+-++-++-..+-+.+... ..---+|.+..-..-.+.+|.+++
T Consensus 106 ~Y~eA~~~~~ka~------k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvY 174 (557)
T KOG3785|consen 106 QYIEAKSIAEKAP------KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVY 174 (557)
T ss_pred HHHHHHHHHhhCC------CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 8888887765442 23344444 44455667766666665555441 111223333344445688999999
Q ss_pred HhcccCCCccCHhHHHHHH-HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--H--cCChHHHHHHHHHhCcC
Q 006615 231 SALPLMRIKRTSKQYLILV-EGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQ--E--MGFIQGANEFLREMLPD 305 (638)
Q Consensus 231 ~~m~~~g~~p~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~--~--~g~~~~a~~~~~~~~~~ 305 (638)
...... .|+-...|.-+ -+|.+..-++-+.++++-..+. .||...-.-+.+|. + .|+. |.+-.+++...
T Consensus 175 krvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~--ae~E~k~ladN 248 (557)
T KOG3785|consen 175 KRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRT--AEDEKKELADN 248 (557)
T ss_pred HHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccch--hHHHHHHHHhc
Confidence 887754 35555555544 4566777788888887766554 34444322222221 1 1222 11111221110
Q ss_pred ccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCC
Q 006615 306 KRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKS 385 (638)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (638)
.. .-.| ...-+...-+..++.
T Consensus 249 ~~-----------------------------------------------~~~~------------f~~~l~rHNLVvFrn 269 (557)
T KOG3785|consen 249 ID-----------------------------------------------QEYP------------FIEYLCRHNLVVFRN 269 (557)
T ss_pred cc-----------------------------------------------ccch------------hHHHHHHcCeEEEeC
Confidence 00 0000 000001111222455
Q ss_pred hhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HcccCCHHHH
Q 006615 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF-----YGISKKADAA 460 (638)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~-----~~~~g~~~~A 460 (638)
-+.|++++-..+ ...| ..--.++-.|.+.+++.+|..+.+++.- ..|-......++.+ ......+.-|
T Consensus 270 gEgALqVLP~L~---~~IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiA 342 (557)
T KOG3785|consen 270 GEGALQVLPSLM---KHIP--EARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIA 342 (557)
T ss_pred CccHHHhchHHH---hhCh--HhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 556666554332 1122 2223455567788888888887776541 22333333333322 1222335566
Q ss_pred HHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHH
Q 006615 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540 (638)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~ 540 (638)
.+.|+...+. ....|....-.++...+.-..++++.+..++.....=..-|.+.|| +.++++..|++.+|.++|-.
T Consensus 343 qqffqlVG~S---a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~ 418 (557)
T KOG3785|consen 343 QQFFQLVGES---ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIR 418 (557)
T ss_pred HHHHHHhccc---ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhh
Confidence 6666654432 1122222223445555555566777777777776654444555554 56778888888888888876
Q ss_pred HHhCCCCCCHhhHHHHHHH-HHHH---------hhhCCCCCCHHHH-HHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615 541 VRQNGVEPDAYMFKVLIQA-YCKY---------LSNSNLMPDAATK-ELLKKSLWKEGRRKEAAAVEERCEKIND 604 (638)
Q Consensus 541 m~~~~~~p~~~~~~~li~~-~~~~---------m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~ 604 (638)
+....++ |..+|.+++.- |.+. |.+.+-..+..+. ..+.+-|.+.+.+--|-+.|+.++..++
T Consensus 419 is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 419 ISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred hcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 6654443 55666666543 3333 4444433344443 5556778899999999999999887665
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.94 E-value=1.6e-07 Score=85.62 Aligned_cols=151 Identities=10% Similarity=0.038 Sum_probs=93.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHH
Q 006615 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT-VMIEHLVN 219 (638)
Q Consensus 141 ~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~-~li~~~~~ 219 (638)
+.+.+.|.+.|.+.+|.+.|+.-...- |-+.||-.|-++|.+-.+++.|+.+|.+-.+. .|-.+||- -+.+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 456677777777777777777665542 45666777777777777777777777766653 45444443 35556666
Q ss_pred cCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHH
Q 006615 220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGAN 296 (638)
Q Consensus 220 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~ 296 (638)
.++.++|.++|....+.. .-++....++..+|.-.++++-|++.|+++.+.|+.....+.++-.+|.-.++++-++
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhH
Confidence 677777777777665532 2345555556666666777777777777777776654443334444444444444333
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=3.2e-05 Score=76.81 Aligned_cols=446 Identities=11% Similarity=0.067 Sum_probs=248.6
Q ss_pred HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHH--h
Q 006615 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS--T 149 (638)
Q Consensus 72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~--~ 149 (638)
=++.....+++++|+.....+.... +-+...+..=+-++...+++++|..+.+.-... ..+.. | .+=.+|| +
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~-~-~fEKAYc~Yr 91 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINS-F-FFEKAYCEYR 91 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcch-h-hHHHHHHHHH
Confidence 4677788899999999999998653 344556777777778889999998665432210 11111 1 0345555 6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHHHH
Q 006615 150 SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV-NLGKLDSALE 228 (638)
Q Consensus 150 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~-~~g~~~~A~~ 228 (638)
.+..++|+..++..... |..+...-...+.+.|++++|+.+|+.+.+.+.. .+..-+.+-+ ..+..-.+.
T Consensus 92 lnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a~~a~l~~~- 162 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLAVAAALQVQ- 162 (652)
T ss_pred cccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHhhhHH-
Confidence 78999999999833222 2335555567788999999999999999886543 2322222211 111111221
Q ss_pred HHHhcccCCCccCHhHHHHH---HHHHHccCCHHHHHHHHHHHHhC--------CCC-----CCHHHH--HHHHHHHHcC
Q 006615 229 VFSALPLMRIKRTSKQYLIL---VEGFVGVERFDEAKSLLNEMRDD--------GKF-----PGRAMR--VALERMQEMG 290 (638)
Q Consensus 229 ~~~~m~~~g~~p~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~--------g~~-----p~~~~~--~ll~~~~~~g 290 (638)
+.+... ..| ..+|..+ ...+...|++.+|+++++...+- ... ....+. .+...+...|
T Consensus 163 ~~q~v~---~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 163 LLQSVP---EVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred HHHhcc---CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 233333 233 2334333 34556789999999999887221 111 111122 3445677899
Q ss_pred ChHHHHHHHHHhCcCccccccc--cccCCCCCccccccCCCCCccccccccccCCCChhh------HHHHhhcCCHHHHH
Q 006615 291 FIQGANEFLREMLPDKRIKNVR--YYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKA------LANTLDEWSPEVVS 362 (638)
Q Consensus 291 ~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 362 (638)
+.++|..++..+.......... +...+. -.......+.+... ....+....-...+
T Consensus 239 qt~ea~~iy~~~i~~~~~D~~~~Av~~NNL----------------va~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls 302 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRNPADEPSLAVAVNNL----------------VALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLS 302 (652)
T ss_pred chHHHHHHHHHHHHhcCCCchHHHHHhcch----------------hhhccccccCchHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999998886554332211 111000 00011112222100 00000000000000
Q ss_pred HhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCC
Q 006615 363 LLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILAR--HGHVELVDRLIAKLRSDGMRLP 440 (638)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~--~g~~~~a~~l~~~m~~~g~~~~ 440 (638)
.-....+..+..+ +.-..+..+.+.++-. ...+..|... +.+++..+.+ .....++.+++...-+....-.
T Consensus 303 ~~qk~~i~~N~~l---L~l~tnk~~q~r~~~a---~lp~~~p~~~-~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s 375 (652)
T KOG2376|consen 303 KKQKQAIYRNNAL---LALFTNKMDQVRELSA---SLPGMSPESL-FPILLQEATKVREKKHKKAIELLLQFADGHPEKS 375 (652)
T ss_pred HHHHHHHHHHHHH---HHHHhhhHHHHHHHHH---hCCccCchHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchh
Confidence 0000000011111 1111233444444433 3334445443 4444444433 2346677777777665543323
Q ss_pred HHHHHHHHHHHcccCCHHHHHHHHHhchhcc-----CCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhC--CCCc
Q 006615 441 FSTIRLIIDFYGISKKADAALKAFHDDRTLC-----GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS--GIVP 513 (638)
Q Consensus 441 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p 513 (638)
..+.-.+++.....|+++.|.+++....... ...-.| .+...+...+.+.++.+.|.+++++.... .-.+
T Consensus 376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P---~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t 452 (652)
T KOG2376|consen 376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP---GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQT 452 (652)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh---hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcc
Confidence 4555666778889999999999998322110 011122 45677788888888888898888887652 1123
Q ss_pred chhhHHHHHH----HHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHH
Q 006615 514 DVQTFSGLMY----HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY 563 (638)
Q Consensus 514 ~~~t~~~li~----~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 563 (638)
.....++++. --.+.|+-++|..+++++.+.. .+|..+...++.+|++.
T Consensus 453 ~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 453 GSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL 505 (652)
T ss_pred cchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc
Confidence 3344444443 2346799999999999999864 67899999999999987
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.93 E-value=2.6e-06 Score=87.27 Aligned_cols=130 Identities=15% Similarity=0.067 Sum_probs=92.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHH
Q 006615 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLL 487 (638)
Q Consensus 408 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li 487 (638)
++.-+...|...|++++|++++++.+++... .+..|..-...|-+.|++.+|...++..+.. ++.+...-+-..
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L-----D~~DRyiNsK~a 269 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEAREL-----DLADRYINSKCA 269 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC-----ChhhHHHHHHHH
Confidence 3355566777888888888888888876533 3567777778888888888888888887764 233335556667
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCcchh------hH--HHHHHHHHccCCHHHHHHHHHHHHh
Q 006615 488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQ------TF--SGLMYHFALQGDEKIVQKLFSMVRQ 543 (638)
Q Consensus 488 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~------t~--~~li~~~~~~g~~~~a~~l~~~m~~ 543 (638)
..+.++|+.++|.+++....+.+..|-.. .| .-...+|.+.|++..|++.|..+.+
T Consensus 270 Ky~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 270 KYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77888899999988888887766543221 11 3345688888888888877765554
No 70
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.87 E-value=3.4e-06 Score=86.46 Aligned_cols=139 Identities=16% Similarity=0.103 Sum_probs=105.9
Q ss_pred HHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHH
Q 006615 443 TIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522 (638)
Q Consensus 443 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 522 (638)
++..+-+.|-..|++++|+.+.+...+. .|..+..|..-...|-+.|++.+|.+.++........ |...=+-..
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h-----tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~a 269 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH-----TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCA 269 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHH
Confidence 4456677788999999999999998876 4555678999999999999999999999999986532 666666777
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 006615 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKI 602 (638)
Q Consensus 523 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (638)
..+.+.|++++|.+++....+.+..|-...+ ++=| ..-..-...+|.+.|++..|.+-|..+.+.
T Consensus 270 Ky~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~----~mQc-----------~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 270 KYLLRAGRIEEAEKTASLFTREDVDPLSNLN----DMQC-----------MWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhcCCCCCcccCHH----HHHH-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8999999999999999999887753332111 1111 011144567888999999998888777664
No 71
>PF12854 PPR_1: PPR repeat
Probab=98.87 E-value=3.7e-09 Score=63.78 Aligned_cols=32 Identities=31% Similarity=0.686 Sum_probs=15.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 006615 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233 (638)
Q Consensus 202 g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 233 (638)
|+.||..||++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44444444444444444444444444444444
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=2.9e-07 Score=84.05 Aligned_cols=224 Identities=14% Similarity=0.103 Sum_probs=184.8
Q ss_pred HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHH-HHHHHHHhc
Q 006615 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFM-NLMQWYSTS 150 (638)
Q Consensus 72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~-~ll~~~~~~ 150 (638)
+...|.+.|.+.+|-..|+...++. |-+.+|-.+-+.|.+...+..|..++.+-... -|-.+||. -..+.+-..
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~---~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQF---PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcC---CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 5678889999999999999887652 33448999999999999999999999988764 24444443 466888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006615 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230 (638)
Q Consensus 151 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~ 230 (638)
++.++|.+++++..+.. +.++.+...+...|.-.++++-|+..|+++.+.|+. +...|+.+--+|.-.+++|-+...|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999988764 567788888888888899999999999999999987 8889999988899999999999999
Q ss_pred HhcccCCCccC--HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHh
Q 006615 231 SALPLMRIKRT--SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREM 302 (638)
Q Consensus 231 ~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~ 302 (638)
++....--.|+ ..+|-.+-......|++.-|.+.|+-....+..-.....++...-.+.|++++|..++...
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 88765433343 3568888888899999999999999888776555555666666678999999999999865
No 73
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=2.9e-06 Score=83.48 Aligned_cols=278 Identities=12% Similarity=0.010 Sum_probs=165.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 006615 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220 (638)
Q Consensus 141 ~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 220 (638)
..-.+-+...+++.+..++++...+.. +++...+..-|.++.+.|+..+-..+=.+|++. .+-.+.+|-++.-.|.-.
T Consensus 248 ~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 248 AEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHh
Confidence 334444555566666666666666553 455555666666666666665555555555553 222455666666666666
Q ss_pred CCHHHHHHHHHhcccCCCcc-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHH
Q 006615 221 GKLDSALEVFSALPLMRIKR-TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFL 299 (638)
Q Consensus 221 g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~ 299 (638)
|+.++|.+.|.+.... .| =...|-.....|+-.|.-|+|+..|...-+.=..--..+.-+-.-|.+.++.+.|.++|
T Consensus 326 ~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred cCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 6666666666654432 12 13456666666666666666666665543310000001111223344445555555555
Q ss_pred HHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHH
Q 006615 300 REMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKV 379 (638)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (638)
.+
T Consensus 404 ~~------------------------------------------------------------------------------ 405 (611)
T KOG1173|consen 404 KQ------------------------------------------------------------------------------ 405 (611)
T ss_pred HH------------------------------------------------------------------------------
Confidence 44
Q ss_pred HhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC--CCCHHHHHHHHHHHcc
Q 006615 380 LRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD----GM--RLPFSTIRLIIDFYGI 453 (638)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~--~~~~~~~~~li~~~~~ 453 (638)
..... +-|+...+-+--.....+.+.+|..+|+..... +. .--..+++.|..+|.+
T Consensus 406 ----------------A~ai~--P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 406 ----------------ALAIA--PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred ----------------HHhcC--CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 32221 224445555554555667777777777765521 11 1134567888889999
Q ss_pred cCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Q 006615 454 SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF 525 (638)
Q Consensus 454 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 525 (638)
.+++++|+..|+..... .|..+.++.++.-.|...|+++.|.+.|.+..- +.||..+-..++..+
T Consensus 468 l~~~~eAI~~~q~aL~l-----~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLL-----SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HhhHHHHHHHHHHHHHc-----CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 99999999999987764 333357888888889999999999999988875 578887777776643
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.83 E-value=0.00015 Score=73.11 Aligned_cols=424 Identities=13% Similarity=0.084 Sum_probs=237.7
Q ss_pred cCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHH
Q 006615 78 SAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVL 157 (638)
Q Consensus 78 ~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 157 (638)
..+++...+.+.+.+.+..+-.++ +....--.+...|+.++|....+.-.+.. ..+.+.|+.+.-.+-...++++|.
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHge--slAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGE--SLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccch--hHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHH
Confidence 456677777777777765433344 33333334566778888888777766543 344555777777677777888888
Q ss_pred HHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccC
Q 006615 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLM 236 (638)
Q Consensus 158 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~ 236 (638)
+.|......+ +.|...|.-+--.-++.|+++...+.-.+..+. .| ....|.....++--.|+...|..+.++..+.
T Consensus 96 Kcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 96 KCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888877654 445666766666666777777777776666663 23 3455666777777778888888888777664
Q ss_pred C-CccCHhHHHHHH------HHHHccCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHcCChHHHHHHHHHhCcCcc
Q 006615 237 R-IKRTSKQYLILV------EGFVGVERFDEAKSLLNEMRDDGKFPGRAMR--VALERMQEMGFIQGANEFLREMLPDKR 307 (638)
Q Consensus 237 g-~~p~~~~~~~li------~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~ 307 (638)
. -.|+...|.-.. ....+.|.+++|.+-+.+-... + .|..-+ .-..-+.+.+++++|..++..+.....
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP 250 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP 250 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc
Confidence 3 235555543332 2334567777777766554321 1 122222 233456777888888888776642211
Q ss_pred ccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChh
Q 006615 308 IKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPE 387 (638)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (638)
+.+.. ...+-..+....+..
T Consensus 251 ---------------------------------------------------dn~~Y---------y~~l~~~lgk~~d~~ 270 (700)
T KOG1156|consen 251 ---------------------------------------------------DNLDY---------YEGLEKALGKIKDML 270 (700)
T ss_pred ---------------------------------------------------hhHHH---------HHHHHHHHHHHhhhH
Confidence 00000 000111111111222
Q ss_pred HHH-HHHHHHhcCC--CCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHH---
Q 006615 388 TAW-HFFCWVAYQP--GYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL--- 461 (638)
Q Consensus 388 ~a~-~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~--- 461 (638)
+++ .+|....... ...|-.... .......-.+...+++..+.+.|+++- +..+...|-.....+-..
T Consensus 271 ~~lk~ly~~ls~~y~r~e~p~Rlpl----svl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lv 343 (700)
T KOG1156|consen 271 EALKALYAILSEKYPRHECPRRLPL----SVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLV 343 (700)
T ss_pred HHHHHHHHHHhhcCcccccchhccH----HHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHH
Confidence 222 2333221111 001111111 111112223445566777778887643 333444443322222111
Q ss_pred -HHHHhchhccCCC-------cchhHHHH--HHHHHHHHHccCChHHHHHHHHHHHhCCCCcchh-hHHHHHHHHHccCC
Q 006615 462 -KAFHDDRTLCGPI-------SKFKLMLL--YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ-TFSGLMYHFALQGD 530 (638)
Q Consensus 462 -~~~~~~~~~~~~~-------~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~li~~~~~~g~ 530 (638)
.+...+... +.. ..|..... +--++..+-+.|+++.|....+..++. .|+.+ -|..=.+.+...|+
T Consensus 344 t~y~~~L~~~-~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~ 420 (700)
T KOG1156|consen 344 TSYQHSLSGT-GMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGL 420 (700)
T ss_pred HHHHhhcccc-cCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCC
Confidence 122221111 000 11222244 455788899999999999999999986 67654 45555688999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcc
Q 006615 531 EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIN 603 (638)
Q Consensus 531 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 603 (638)
+++|...+++..+.+ .||...-..-..-..++.+.++|.++......-|
T Consensus 421 l~eAa~~l~ea~elD------------------------~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 421 LDEAAAWLDEAQELD------------------------TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred hHHHHHHHHHHHhcc------------------------chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 999999999999875 3343333344445556677777777776665544
No 75
>PF12854 PPR_1: PPR repeat
Probab=98.82 E-value=5e-09 Score=63.18 Aligned_cols=34 Identities=29% Similarity=0.402 Sum_probs=24.6
Q ss_pred cCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006615 166 RAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199 (638)
Q Consensus 166 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 199 (638)
+|+.||..|||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3667777777777777777777777777777763
No 76
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=0.0001 Score=75.85 Aligned_cols=207 Identities=18% Similarity=0.166 Sum_probs=123.3
Q ss_pred HHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh-CC--------CCCchHhHHHHHHH
Q 006615 76 LRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS-SK--------FLNVSVNFMNLMQW 146 (638)
Q Consensus 76 l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~-~~--------~~~~~~~~~~ll~~ 146 (638)
|..-|+.+.|.+-.+.++... +|..+.+.|.+.++++-|.-.+..|.. +| ..++ .+=....-.
T Consensus 738 yvtiG~MD~AfksI~~IkS~~-------vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIKSDS-------VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEeccHHHHHHHHHHHhhhH-------HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 456689999988888777543 899999999999999999888877753 11 1121 111222333
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006615 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226 (638)
Q Consensus 147 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A 226 (638)
-...|.+++|+.+|.+-+..+ .|=..|-..|.+++|+++-+.=-+ +. =..||..-...+-..++.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHHHHHHHHHhhccHHHH
Confidence 456788888888888776543 222334556777777776554222 11 123444444444555666666
Q ss_pred HHHHHhcccCC-------------------CccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC----------CC----
Q 006615 227 LEVFSALPLMR-------------------IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD----------GK---- 273 (638)
Q Consensus 227 ~~~~~~m~~~g-------------------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----------g~---- 273 (638)
.+.|++..... -..|...|.-....+-..|+.+.|+.+|...++. |-
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kA 957 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKA 957 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHH
Confidence 66655422110 0124444555555555567777777776655431 00
Q ss_pred ------CCC-HHHHHHHHHHHHcCChHHHHHHHHHh
Q 006615 274 ------FPG-RAMRVALERMQEMGFIQGANEFLREM 302 (638)
Q Consensus 274 ------~p~-~~~~~ll~~~~~~g~~~~a~~~~~~~ 302 (638)
.-| .+.|.+.+.|...|++.+|..+|.+.
T Consensus 958 a~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 958 ARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 011 23466777788888888888887665
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.77 E-value=2.8e-06 Score=82.31 Aligned_cols=220 Identities=8% Similarity=0.069 Sum_probs=153.3
Q ss_pred HHcCCChhHHHHHHHHHHcCCCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCH
Q 006615 76 LRSAPNADSALSIMEALKSNPNFSHNQ--STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153 (638)
Q Consensus 76 l~~~~~~~~Al~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 153 (638)
+...+..+.++.-+..+.......|+. ..|......+...|+.++|...|++..+.. +.+...|+.+...+...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCH
Confidence 444467788888888888654444432 356677777889999999999999988754 45677899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 006615 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233 (638)
Q Consensus 154 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 233 (638)
++|...|++..+.+ +-+..+|..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.|++.
T Consensus 115 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 115 DAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 99999999998865 335678888888899999999999999999884 454432222233344567899999999765
Q ss_pred ccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC---CC--CC--CHHHHHHHHHHHHcCChHHHHHHHHHhCc
Q 006615 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD---GK--FP--GRAMRVALERMQEMGFIQGANEFLREMLP 304 (638)
Q Consensus 234 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~--~p--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 304 (638)
... ..|+...| .+.. ...|+..++ +.+..+.+. .+ .| ...++.+...+.+.|++++|...|+....
T Consensus 192 ~~~-~~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 192 YEK-LDKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred Hhh-CCccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 432 13333222 2222 334555443 344444321 11 11 12345778889999999999999998753
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.76 E-value=3.3e-06 Score=81.74 Aligned_cols=211 Identities=15% Similarity=-0.014 Sum_probs=147.9
Q ss_pred CChhHHHHHHHHHhcCCCCcCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHH
Q 006615 384 KSPETAWHFFCWVAYQPGYTHDV--YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL 461 (638)
Q Consensus 384 ~~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 461 (638)
...+.++..+.++.......|+. ..|..+-..+...|+.++|...|++..+.... +...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 45566677777666544444443 45777777888999999999999998887643 6788999999999999999999
Q ss_pred HHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHH
Q 006615 462 KAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMV 541 (638)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m 541 (638)
..|+...+. .|+...+|..+...+...|++++|.+.|++..+. .|+..........+...++.++|.+.|++.
T Consensus 119 ~~~~~Al~l-----~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 119 EAFDSVLEL-----DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999998765 4554578888888899999999999999998875 455432222222344567899999999765
Q ss_pred HhCCCCCCHhhHHHHHHHHHHH---------hh-hCC----CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615 542 RQNGVEPDAYMFKVLIQAYCKY---------LS-NSN----LMP-DAATKELLKKSLWKEGRRKEAAAVEERCEKIND 604 (638)
Q Consensus 542 ~~~~~~p~~~~~~~li~~~~~~---------m~-~~g----~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 604 (638)
.... .|+... ..+...+... +. ... +.| ....|..+...+.+.|++++|...|++..+.++
T Consensus 192 ~~~~-~~~~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 192 YEKL-DKEQWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HhhC-CccccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 5432 333221 1222221111 11 111 112 235788899999999999999999999998764
No 79
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.72 E-value=0.00056 Score=70.47 Aligned_cols=175 Identities=16% Similarity=0.166 Sum_probs=118.7
Q ss_pred HhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 006615 129 SSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSR 208 (638)
Q Consensus 129 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 208 (638)
....+..|...|..|.-+...+|+++.+.+.|++....- --....|+.+-..|...|.-..|..+++.-....-.|+..
T Consensus 315 r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~ 393 (799)
T KOG4162|consen 315 RLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI 393 (799)
T ss_pred HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence 334455678889999999999999999999999876542 2346789999999999999999999998877654335444
Q ss_pred HHHHHH-HHHH-HcCCHHHHHHHHHhcccC--CC--ccCHhHHHHHHHHHHcc-----------CCHHHHHHHHHHHHhC
Q 006615 209 TYTVMI-EHLV-NLGKLDSALEVFSALPLM--RI--KRTSKQYLILVEGFVGV-----------ERFDEAKSLLNEMRDD 271 (638)
Q Consensus 209 ty~~li-~~~~-~~g~~~~A~~~~~~m~~~--g~--~p~~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~ 271 (638)
+--.++ +.|. +.|.++++..+-.+.... |. ......|-.+.-+|... ....++++.+++..+.
T Consensus 394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~ 473 (799)
T KOG4162|consen 394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF 473 (799)
T ss_pred hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence 433333 3343 346666666655554431 10 12345566555555432 2245677888888777
Q ss_pred CCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCc
Q 006615 272 GKFPGRAMRVALERMQEMGFIQGANEFLREMLP 304 (638)
Q Consensus 272 g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 304 (638)
+.....+.+.+-.-|+..++++.|.+..++...
T Consensus 474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~ 506 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALA 506 (799)
T ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 665555666666678888999999998887643
No 80
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=0.00026 Score=65.98 Aligned_cols=399 Identities=13% Similarity=0.056 Sum_probs=227.4
Q ss_pred HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG 151 (638)
Q Consensus 72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g 151 (638)
+...+-+.|++++|+..|..+.... .++...+-.+.-...-.|.+.+|..+-....+ ++-.-..|...--+.+
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhC
Confidence 4456678899999999999988754 34444555555555567888888877654332 2322334445556667
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHHcCCHHHHHHHH
Q 006615 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI-EHLVNLGKLDSALEVF 230 (638)
Q Consensus 152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li-~~~~~~g~~~~A~~~~ 230 (638)
+-++-..+-+.+... ..---+|.+..-..-.+.+|+++|.+....+ |+-...|.-+ -+|.+..-++-+.+++
T Consensus 136 dEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl 208 (557)
T KOG3785|consen 136 DEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVL 208 (557)
T ss_pred cHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHH
Confidence 776666666655432 1222334444333445778888888887642 4444455433 3456666677777766
Q ss_pred HhcccCCCccCH-hHHHHHHHHHHc--cCCHHHHH--H----------HHHHHHhCC------------CCCCH------
Q 006615 231 SALPLMRIKRTS-KQYLILVEGFVG--VERFDEAK--S----------LLNEMRDDG------------KFPGR------ 277 (638)
Q Consensus 231 ~~m~~~g~~p~~-~~~~~li~~~~~--~g~~~~A~--~----------l~~~m~~~g------------~~p~~------ 277 (638)
.-..+. -||+ ..-|.......+ .|+..++. + ..+.+.+.+ +.|..
T Consensus 209 ~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPE 286 (557)
T KOG3785|consen 209 KVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPE 286 (557)
T ss_pred HHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChH
Confidence 654432 2443 333333322222 23322211 1 111111111 11110
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCC
Q 006615 278 AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWS 357 (638)
Q Consensus 278 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (638)
+-.+++.-|.+.+++++|..+.+++.+...-.- .+++.
T Consensus 287 ARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~Ey-----------------------------------------ilKgv- 324 (557)
T KOG3785|consen 287 ARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEY-----------------------------------------ILKGV- 324 (557)
T ss_pred hhhhheeeecccccHHHHHHHHhhcCCCChHHH-----------------------------------------HHHHH-
Confidence 112344556778888888888887754321000 00000
Q ss_pred HHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006615 358 PEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYA-LEKMLTILARHGHVELVDRLIAKLRSDG 436 (638)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~l~~~m~~~g 436 (638)
....+++-.........|.++|.-+ ..++...|... -.++..++.-..++++++..++.+...-
T Consensus 325 --------------v~aalGQe~gSreHlKiAqqffqlV-G~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF 389 (557)
T KOG3785|consen 325 --------------VFAALGQETGSREHLKIAQQFFQLV-GESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF 389 (557)
T ss_pred --------------HHHHhhhhcCcHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000111111122344577777665 34444444433 4466667777788999988888887654
Q ss_pred CCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHH-HHHHHHccCChHHHHHHHHHHHhCCCCcch
Q 006615 437 MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSS-LLRTLTKCKRDFDAINVLEEMIFSGIVPDV 515 (638)
Q Consensus 437 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 515 (638)
..-|..-+ .+.++++..|.+.+|+++|-.+... .-.|. .+|-+ |..+|.+++..+.|+.++-.+.. +.+.
T Consensus 390 ~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~----~ikn~-~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~ 460 (557)
T KOG3785|consen 390 TNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP----EIKNK-ILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSER 460 (557)
T ss_pred cCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh----hhhhh-HHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhH
Confidence 44344444 4678999999999999999886532 11232 56655 45688999999999887655543 3355
Q ss_pred hhHHHHH-HHHHccCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 006615 516 QTFSGLM-YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK 554 (638)
Q Consensus 516 ~t~~~li-~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~ 554 (638)
.+.-.+| +-|-+.+.+--|-+-|+++... .|+..-|.
T Consensus 461 fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe 498 (557)
T KOG3785|consen 461 FSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE 498 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC
Confidence 5555555 5788888888888888888875 46555553
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.71 E-value=0.00013 Score=73.36 Aligned_cols=60 Identities=12% Similarity=-0.021 Sum_probs=39.4
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCc------chhhHHHHH--HHHHccCCHHHHHHHHHHHHhC
Q 006615 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVP------DVQTFSGLM--YHFALQGDEKIVQKLFSMVRQN 544 (638)
Q Consensus 485 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p------~~~t~~~li--~~~~~~g~~~~a~~l~~~m~~~ 544 (638)
....++...|+.+.|.++++.+......+ ...+-..++ -++...|+.++|.+.+......
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46667788889999999998886632220 111222233 3455789999999998877653
No 82
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=0.00014 Score=76.53 Aligned_cols=215 Identities=15% Similarity=0.151 Sum_probs=108.3
Q ss_pred CchhhHHHHhchhhhHHHHHHHHhcCCCCcchhhhccCCCCHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHH
Q 006615 28 PFTNKLALYLRRAQLIDSIRLAVRSNSSNSLSSLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHA 107 (638)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~ 107 (638)
.|.+-+..|+=+.++...+.-..+...+..++ .++.++..-.-.++.++-+-..... .++ -..
T Consensus 781 ~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p-----------~VvG~LLD~dC~E~~ik~Li~~v~g-q~~-----~de 843 (1666)
T KOG0985|consen 781 DFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTP-----------QVVGALLDVDCSEDFIKNLILSVRG-QFP-----VDE 843 (1666)
T ss_pred ccHHHHHHHHHHhhHHHHHHHHHhhcCCcccc-----------hhhhhhhcCCCcHHHHHHHHHHHhc-cCC-----hHH
Confidence 35555566665666555555555444433332 1444554444344433332222221 122 234
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC
Q 006615 108 LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187 (638)
Q Consensus 108 li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 187 (638)
+..-+-+.+++.....+++...+.|. .|..++|+|...|...++-.+-. .+.+ ..-=+..+.-||..++
T Consensus 844 Lv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~f------LkeN----~yYDs~vVGkYCEKRD 912 (1666)
T KOG0985|consen 844 LVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERF------LKEN----PYYDSKVVGKYCEKRD 912 (1666)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHh------cccC----CcchhhHHhhhhcccC
Confidence 56666777888888888888887774 56677888888888776544321 1111 1111223455676666
Q ss_pred hHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHcCCHHHHHHHH-----------HhcccCCC--ccCHhHHHHHHH
Q 006615 188 NFEAVETFRQVIDE----GAIPNSRTYTVMIEHLVNLGKLDSALEVF-----------SALPLMRI--KRTSKQYLILVE 250 (638)
Q Consensus 188 ~~~A~~~~~~m~~~----g~~p~~~ty~~li~~~~~~g~~~~A~~~~-----------~~m~~~g~--~p~~~~~~~li~ 250 (638)
+--|.-.|++-... ++.-....|....+...+..+.+--.+++ ++..+.++ ..|..-.+.-+.
T Consensus 913 P~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVk 992 (1666)
T KOG0985|consen 913 PHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVK 992 (1666)
T ss_pred CceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHH
Confidence 65554443321110 01111223333344444444443333332 22322222 234455566677
Q ss_pred HHHccCCHHHHHHHHHHHHh
Q 006615 251 GFVGVERFDEAKSLLNEMRD 270 (638)
Q Consensus 251 ~~~~~g~~~~A~~l~~~m~~ 270 (638)
++...+-..+-+++++++.-
T Consensus 993 AfMtadLp~eLIELLEKIvL 1012 (1666)
T KOG0985|consen 993 AFMTADLPNELIELLEKIVL 1012 (1666)
T ss_pred HHHhcCCcHHHHHHHHHHhc
Confidence 77777777777777777753
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.64 E-value=0.00017 Score=72.63 Aligned_cols=198 Identities=9% Similarity=-0.029 Sum_probs=127.1
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhH-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHH---HHHH
Q 006615 71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQST-LHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN---LMQW 146 (638)
Q Consensus 71 ~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~---ll~~ 146 (638)
.+...+...|+++.+...+....+.....++... .......+...|+++.+..++++..+.. +.+...+.. +...
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~ 89 (355)
T cd05804 11 AAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGL 89 (355)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHh
Confidence 3445555667788877777766643323333322 2222334567799999999999887653 334333332 1111
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006615 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226 (638)
Q Consensus 147 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A 226 (638)
....+..+.+.+.++. .....+.+......+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|
T Consensus 90 ~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA 167 (355)
T cd05804 90 GDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEG 167 (355)
T ss_pred cccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHH
Confidence 1224555556665554 112222233444556677888999999999999998853 22566778888889999999999
Q ss_pred HHHHHhcccCCC-ccCH--hHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615 227 LEVFSALPLMRI-KRTS--KQYLILVEGFVGVERFDEAKSLLNEMRDD 271 (638)
Q Consensus 227 ~~~~~~m~~~g~-~p~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 271 (638)
...+++.....- .|+. ..|..+...+...|++++|..++++....
T Consensus 168 ~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 168 IAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 999988765321 1232 34557788899999999999999998543
No 84
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.61 E-value=0.0013 Score=68.99 Aligned_cols=152 Identities=13% Similarity=0.040 Sum_probs=90.5
Q ss_pred HHHHHHHHHcccCCHH---HHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHH
Q 006615 443 TIRLIIDFYGISKKAD---AALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFS 519 (638)
Q Consensus 443 ~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 519 (638)
+.+.|++.|-+.++.. +|+-+++..... .|.+..+=-.+|..|+-.|-...|.++|+.|--+.+.-|..-|.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~-----s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~ 512 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTK-----SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL 512 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-----CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH
Confidence 3467888888888755 444555544332 22222444567888888899999999999987777777766654
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHH--------------hhhCCCCCCHHHHHHHHHHHhc
Q 006615 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY--------------LSNSNLMPDAATKELLKKSLWK 585 (638)
Q Consensus 520 ~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~--------------m~~~g~~p~~~~~~~li~~~~~ 585 (638)
+ .+-+...|++..+-..++...+-=-..-..+-..+..+|-+. |...-..--..+-+..++.++.
T Consensus 513 ~-~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~ 591 (932)
T KOG2053|consen 513 I-FRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCN 591 (932)
T ss_pred H-HHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 344556677766666665433210000111222333333332 2221222223345778888889
Q ss_pred cCcHHHHHHHHHHHH
Q 006615 586 EGRRKEAAAVEERCE 600 (638)
Q Consensus 586 ~g~~~~A~~~~~~~~ 600 (638)
.++.++-.+.+..|+
T Consensus 592 ~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 592 ADRGTQLLKLLESMK 606 (932)
T ss_pred CCcHHHHHHHHhccc
Confidence 999999888888766
No 85
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=0.00073 Score=71.48 Aligned_cols=202 Identities=11% Similarity=0.158 Sum_probs=114.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHcC-CCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHH
Q 006615 69 PFIVTHALRSAPNADSALSIMEALKSN-PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWY 147 (638)
Q Consensus 69 ~~~~~~~l~~~~~~~~Al~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~ 147 (638)
..+.+.++...+-+.+-+++++.+.-. ..+.-+...-|.++-...+. +.....+..+++-.-. .|+ +....
T Consensus 987 vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------ia~ia 1058 (1666)
T KOG0985|consen 987 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------IAEIA 1058 (1666)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------HHHHH
Confidence 344667777777777777777776632 22333333334444333333 2333333444433321 122 33445
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006615 148 STSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227 (638)
Q Consensus 148 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 227 (638)
...+-+++|..+|+.... +..+.+.||.- -+..+.|.++-++.- ....|..+.++-.+.|.+.+|.
T Consensus 1059 i~~~LyEEAF~ifkkf~~-----n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAi 1124 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFDM-----NVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAI 1124 (1666)
T ss_pred hhhhHHHHHHHHHHHhcc-----cHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHH
Confidence 556666777777765432 24445555543 255666666555432 3456777777777777777777
Q ss_pred HHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHH
Q 006615 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFL 299 (638)
Q Consensus 228 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~ 299 (638)
+-|-+. -|...|..+|+...+.|.+++-.+.+.-.++..-.|... ..++.+|++.+++.+..+++
T Consensus 1125 eSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id-~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1125 ESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID-SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred HHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch-HHHHHHHHHhchHHHHHHHh
Confidence 666443 255667777777777777777777776555555444332 24566777777776665554
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.59 E-value=5.2e-05 Score=66.52 Aligned_cols=160 Identities=17% Similarity=0.098 Sum_probs=113.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 006615 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLV 218 (638)
Q Consensus 140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~ 218 (638)
...|.-.|.+.|+...|..-+++..+.+ +.+..+|..+...|-+.|..+.|.+.|++..+. .| +..+.|.--..+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHH
Confidence 4456667888888888888888888775 445667888888888888888888888887774 34 5566677777778
Q ss_pred HcCCHHHHHHHHHhcccCCCcc-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHH
Q 006615 219 NLGKLDSALEVFSALPLMRIKR-TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANE 297 (638)
Q Consensus 219 ~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~ 297 (638)
..|++++|.+.|++.....--+ -..+|..+.-+..+.|+++.|.+.|++..+....-+.....+.....+.|++..|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 8888888888888766522111 245677777777888888888888888777655444444556666666666666666
Q ss_pred HHHHh
Q 006615 298 FLREM 302 (638)
Q Consensus 298 ~~~~~ 302 (638)
+++..
T Consensus 195 ~~~~~ 199 (250)
T COG3063 195 YLERY 199 (250)
T ss_pred HHHHH
Confidence 66555
No 87
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=0.00011 Score=66.69 Aligned_cols=320 Identities=13% Similarity=0.074 Sum_probs=170.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHH-HHHHH
Q 006615 105 LHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV-MSVYA 183 (638)
Q Consensus 105 ~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l-i~~~~ 183 (638)
+.+++..+.+..++.++.+++....++. +.+......|...|-...++..|-..++++-..- |...-|... ...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 4555555566666666666666555442 2244445556666666667777777777665542 434444322 34455
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHH
Q 006615 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV--NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261 (638)
Q Consensus 184 ~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 261 (638)
+.+.+.+|+.+...|... |+...-..-+.+-. ..+++-.+..++++....| +..+.+...-...+.|++++|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 566667777776666542 22222222222222 3456666666666665322 333333344444566777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCcccccccccc
Q 006615 262 KSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLK 341 (638)
Q Consensus 262 ~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (638)
.+-|+...+.+-.-....|++..+..+.|+.+.|.+...++...+........+ | ...
T Consensus 164 vqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgI-G---m~t------------------ 221 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGI-G---MTT------------------ 221 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCc-c---cee------------------
Confidence 777766654432222334455555666677777777766665444321111000 0 000
Q ss_pred CCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCC
Q 006615 342 PWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGH 421 (638)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 421 (638)
...+...+...+.. ..++.+...++-....-+.++++.|.+.+..|..+.....|++|...+.-.= ..++
T Consensus 222 egiDvrsvgNt~~l---------h~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~ 291 (459)
T KOG4340|consen 222 EGIDVRSVGNTLVL---------HQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDAR 291 (459)
T ss_pred ccCchhcccchHHH---------HHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCC
Confidence 00011111111110 0011111122223333456888889999988877777777888876654222 2344
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHh
Q 006615 422 VELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHD 466 (638)
Q Consensus 422 ~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 466 (638)
+....+=+.-+...++ ....||..++-.||++.-++-|-.++.+
T Consensus 292 p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 292 PTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred ccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 5555555555555554 3457888888899999999988888876
No 88
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.56 E-value=0.00066 Score=70.00 Aligned_cols=426 Identities=13% Similarity=0.029 Sum_probs=240.5
Q ss_pred HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCchHhHHHHHHHHH-h
Q 006615 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSK-FLNVSVNFMNLMQWYS-T 149 (638)
Q Consensus 72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~~~~ll~~~~-~ 149 (638)
+.-++...|+++.+.+.|+..... ..-....|+.+...+...|.-..|..+++.-.... .++|...+-..-+.|. +
T Consensus 329 Lt~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~ 406 (799)
T KOG4162|consen 329 LTFALSRCGQFEVLAEQFEQALPF--SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIER 406 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhc
Confidence 455677788888888888877632 22334567777777888888777777776544322 2233333332233333 2
Q ss_pred cCCHHHHHHHHHHHHh--cCC--CCCHHhHHHHHHHHHhc-----------CChHHHHHHHHHHHHcC-CCCCHHHHHHH
Q 006615 150 SGDLELVLSTWNEYRQ--RAK--LLSTESYNIVMSVYAKT-----------GKNFEAVETFRQVIDEG-AIPNSRTYTVM 213 (638)
Q Consensus 150 ~g~~~~A~~l~~~m~~--~~~--~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g-~~p~~~ty~~l 213 (638)
.|.+++++..-.+... .+. ......|..+.-+|... ....++++.+++..+.+ -.|+..-|-
T Consensus 407 l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~l-- 484 (799)
T KOG4162|consen 407 LKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYL-- 484 (799)
T ss_pred hhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHH--
Confidence 3555555555544443 110 11234455554444331 12356777788777643 234333332
Q ss_pred HHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHcCC
Q 006615 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM--RVALERMQEMGF 291 (638)
Q Consensus 214 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~--~~ll~~~~~~g~ 291 (638)
---|+..++++.|.+..++..+.+-.-+...|.-|.-.+...+++.+|+.+.+.....- |++.. ..-++.=..-++
T Consensus 485 alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~--~~N~~l~~~~~~i~~~~~~ 562 (799)
T KOG4162|consen 485 ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF--GDNHVLMDGKIHIELTFND 562 (799)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--hhhhhhchhhhhhhhhccc
Confidence 23367778888898888888776445678888888888888899999998887664421 11111 011111122556
Q ss_pred hHHHHHHHHHhCcCcc-ccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcc
Q 006615 292 IQGANEFLREMLPDKR-IKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFV 370 (638)
Q Consensus 292 ~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (638)
.+++......+..--. .+.+.. ..++....+...+.+.... ....-.........+.. +....
T Consensus 563 ~e~~l~t~~~~L~~we~~~~~q~-----~~~~g~~~~lk~~l~la~~-q~~~a~s~sr~ls~l~a------~~~~~---- 626 (799)
T KOG4162|consen 563 REEALDTCIHKLALWEAEYGVQQ-----TLDEGKLLRLKAGLHLALS-QPTDAISTSRYLSSLVA------SQLKS---- 626 (799)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhh-----hhhhhhhhhhhcccccCcc-cccccchhhHHHHHHHH------hhhhh----
Confidence 6666555444321000 000000 0000000111111111111 00000011111111100 00000
Q ss_pred cchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 006615 371 WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHD------VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI 444 (638)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~ 444 (638)
.+. +..+..+. ..+ .|+ ...|......+.+.+..++|...+.+..... ......|
T Consensus 627 ------------~~s-e~~Lp~s~---~~~--~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~ 687 (799)
T KOG4162|consen 627 ------------AGS-ELKLPSST---VLP--GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVY 687 (799)
T ss_pred ------------ccc-ccccCccc---ccC--CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHH
Confidence 000 00011110 000 122 2235566667788888899887777766543 2345666
Q ss_pred HHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHH--HHHHHHhCCCCcchhhHHHHH
Q 006615 445 RLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAIN--VLEEMIFSGIVPDVQTFSGLM 522 (638)
Q Consensus 445 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~--l~~~m~~~g~~p~~~t~~~li 522 (638)
......+-..|..++|.+.|...... +|+.+.+.+++...+.+.|+..-|.. ++.++.+.+ +-+...|-.+-
T Consensus 688 ~~~G~~~~~~~~~~EA~~af~~Al~l-----dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG 761 (799)
T KOG4162|consen 688 YLRGLLLEVKGQLEEAKEAFLVALAL-----DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLG 761 (799)
T ss_pred HHhhHHHHHHHhhHHHHHHHHHHHhc-----CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 66667778889999999999987754 66667889999999999998888877 999999875 23677899999
Q ss_pred HHHHccCCHHHHHHHHHHHHhC
Q 006615 523 YHFALQGDEKIVQKLFSMVRQN 544 (638)
Q Consensus 523 ~~~~~~g~~~~a~~l~~~m~~~ 544 (638)
..+-+.|+.++|.+.|....+.
T Consensus 762 ~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 762 EVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHccchHHHHHHHHHHHhh
Confidence 9999999999999999887764
No 89
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=0.0009 Score=63.88 Aligned_cols=166 Identities=10% Similarity=-0.021 Sum_probs=127.0
Q ss_pred cccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006615 369 FVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII 448 (638)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li 448 (638)
.+...++-+.++...+++.+|.-.|+....-. +-+...|.-++.+|...|.+.+|.-+-+..... +.-+..+.+.+.
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La--p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g 409 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQMLA--PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFG 409 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhc
Confidence 44455667888888999999999999875433 346778999999999999999988776654332 112444444442
Q ss_pred -HHHcc-cCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Q 006615 449 -DFYGI-SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFA 526 (638)
Q Consensus 449 -~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 526 (638)
..+.- ..--++|.++++..... .|+...+.+.+...+...|+.+++..++++.... .||....+.|-+.+.
T Consensus 410 ~~V~~~dp~~rEKAKkf~ek~L~~-----~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~ 482 (564)
T KOG1174|consen 410 TLVLFPDPRMREKAKKFAEKSLKI-----NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMR 482 (564)
T ss_pred ceeeccCchhHHHHHHHHHhhhcc-----CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHH
Confidence 33332 33467899999886644 5665567788888899999999999999998874 799999999999999
Q ss_pred ccCCHHHHHHHHHHHHhC
Q 006615 527 LQGDEKIVQKLFSMVRQN 544 (638)
Q Consensus 527 ~~g~~~~a~~l~~~m~~~ 544 (638)
....+.+|+..|....+.
T Consensus 483 A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 483 AQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HhhhHHHHHHHHHHHHhc
Confidence 999999999999988874
No 90
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.54 E-value=0.00049 Score=78.75 Aligned_cols=137 Identities=14% Similarity=0.091 Sum_probs=83.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHH--HH--HHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHH
Q 006615 408 ALEKMLTILARHGHVELVDRLIAKLRSDG--MRLPFS--TI--RLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLML 481 (638)
Q Consensus 408 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~~~~~--~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 481 (638)
.+..+...+...|+++.|.+.+....... ...... .. ...+..+...|+.+.|...+............ ....
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~-~~~~ 692 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNH-FLQG 692 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccch-hHHH
Confidence 34445566777888888888887764321 111110 00 11223445578888888887765432111110 0112
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhC----CCCcc-hhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615 482 LYSSLLRTLTKCKRDFDAINVLEEMIFS----GIVPD-VQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545 (638)
Q Consensus 482 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~ 545 (638)
.+..+...+...|+.++|...+++.... |..++ ..+...+-.++...|+.++|...+.+..+..
T Consensus 693 ~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 693 QWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 2445667788889999999998887653 33332 3456666678889999999999998888654
No 91
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.54 E-value=0.0016 Score=65.84 Aligned_cols=448 Identities=12% Similarity=0.129 Sum_probs=227.8
Q ss_pred HHHHHHcCCChhHHHHHHHHHHcCCC-----CCCChhHHHHHHHHHHhcCChHHH---HHHHHHHHhCCCCCchHhHHHH
Q 006615 72 VTHALRSAPNADSALSIMEALKSNPN-----FSHNQSTLHALATVLAKSQRNHEL---KTLIGDISSSKFLNVSVNFMNL 143 (638)
Q Consensus 72 ~~~~l~~~~~~~~Al~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~a---~~l~~~~~~~~~~~~~~~~~~l 143 (638)
.+..|+..+++++|-+.+..+...+. .+.+...|+.+-...++..+.-.. ..+++.+...--..-...|++|
T Consensus 175 yie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SL 254 (835)
T KOG2047|consen 175 YIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSL 254 (835)
T ss_pred HHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHH
Confidence 56777888888888888887763221 133444566666665555443322 2233333322111123468899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhc----------------C------ChHHHHHHHHHHHHc
Q 006615 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT----------------G------KNFEAVETFRQVIDE 201 (638)
Q Consensus 144 l~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~----------------g------~~~~A~~~~~~m~~~ 201 (638)
.+.|.+.|.++.|..+|++-.+.- .++.-|..+.++|++- + +++-.+.-|+.+...
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 999999999999999999876652 2234455555554431 1 122233334444332
Q ss_pred CC----------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCcc------CHhHHHHHHHHHHccCCHHHHHHH
Q 006615 202 GA----------IP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR------TSKQYLILVEGFVGVERFDEAKSL 264 (638)
Q Consensus 202 g~----------~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p------~~~~~~~li~~~~~~g~~~~A~~l 264 (638)
+. .| +..+|..-. -+..|+..+-...|.+..+. +.| -...|..+...|-..|+++.|..+
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi 409 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVI 409 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence 11 01 122222211 12345566666666655432 112 124577788888888888888888
Q ss_pred HHHHHhCCCCCCH----HHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccc
Q 006615 265 LNEMRDDGKFPGR----AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQL 340 (638)
Q Consensus 265 ~~~m~~~g~~p~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (638)
|++..+....--. ++......=.++.+++.|..+++....-...+...++..+... +..+ .-.+
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv----------Q~rl--hrSl 477 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV----------QARL--HRSL 477 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH----------HHHH--HHhH
Confidence 8887665544322 2223344445666777777777665432222221222211100 0000 0000
Q ss_pred cCCCChhhHHHHhhcCC--HHHHHHhhcCCcccchHH--HHHHHhccCChhHHHHHHHHHhcCCCCcCCH-HHHHHHHHH
Q 006615 341 KPWLDPKALANTLDEWS--PEVVSLLADAKFVWTTRL--VCKVLRHFKSPETAWHFFCWVAYQPGYTHDV-YALEKMLTI 415 (638)
Q Consensus 341 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~ 415 (638)
+-|.---.+.+++-.+. ..+...+.+..+..-.++ .+..+....-++++.+.|+.-...-. -|++ ..|+..+.-
T Consensus 478 kiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk-~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 478 KIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK-WPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC-CccHHHHHHHHHHH
Confidence 00000000111110000 001111111111111111 33445556677778888776432222 2333 356666665
Q ss_pred HHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHH
Q 006615 416 LAR---HGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF--YGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTL 490 (638)
Q Consensus 416 ~~~---~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 490 (638)
+.+ ...++.|.++|++..+ |++|...-+--|+-+ =-+-|....|+.++++....... .+-...||..|.--
T Consensus 557 fi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~---a~~l~myni~I~ka 632 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKE---AQRLDMYNIYIKKA 632 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHH
Confidence 544 2357888888888887 666544322222211 12346777888888886543221 12235788887765
Q ss_pred HccCChHHHHHHHHHHHhCCCCcchhhHHHHHH---HHHccCCHHHHHHHHHHHHh
Q 006615 491 TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY---HFALQGDEKIVQKLFSMVRQ 543 (638)
Q Consensus 491 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~---~~~~~g~~~~a~~l~~~m~~ 543 (638)
+..=-......+|++.++. -||...-...|+ .=++.|.++.|..++..--+
T Consensus 633 ae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 633 AEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 5554555667777777775 466554443333 33567888888888765444
No 92
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=0.00026 Score=73.05 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=62.9
Q ss_pred HHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccC
Q 006615 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455 (638)
Q Consensus 376 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g 455 (638)
.+.++...|.++.|+.+|... .-|-++++..|-.|+.++|-.+-++ .| |....-.+...|-..|
T Consensus 918 WgqYlES~GemdaAl~~Y~~A----------~D~fs~VrI~C~qGk~~kAa~iA~e---sg---d~AAcYhlaR~YEn~g 981 (1416)
T KOG3617|consen 918 WGQYLESVGEMDAALSFYSSA----------KDYFSMVRIKCIQGKTDKAARIAEE---SG---DKAACYHLARMYENDG 981 (1416)
T ss_pred HHHHHhcccchHHHHHHHHHh----------hhhhhheeeEeeccCchHHHHHHHh---cc---cHHHHHHHHHHhhhhH
Confidence 678888899999999999853 3477888889999999999887664 33 6666667888999999
Q ss_pred CHHHHHHHHHhch
Q 006615 456 KADAALKAFHDDR 468 (638)
Q Consensus 456 ~~~~A~~~~~~~~ 468 (638)
++.+|...|-+.+
T Consensus 982 ~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 982 DVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998743
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.52 E-value=7.6e-06 Score=78.07 Aligned_cols=67 Identities=15% Similarity=0.054 Sum_probs=41.5
Q ss_pred cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCH-HHHHHHHHhchhc
Q 006615 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKA-DAALKAFHDDRTL 470 (638)
Q Consensus 403 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~ 470 (638)
.+++.+.+.+..++...|++++|.+++.+....+.. +..+...++.+....|+. +.+.+++.+++..
T Consensus 198 ~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 198 GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp --SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 346666777777777778888887777776655433 455555666666666665 6666777776654
No 94
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.50 E-value=5.7e-05 Score=76.66 Aligned_cols=135 Identities=14% Similarity=0.138 Sum_probs=71.3
Q ss_pred HHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCC
Q 006615 377 CKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK 456 (638)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~ 456 (638)
+..+...|+++.|...|-+.. ..-.-+.+.....++.+|+.+++.+++++.. ..-|..+.+-|+..|+
T Consensus 713 g~hl~~~~q~daainhfiea~----------~~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~d 780 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEAN----------CLIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGD 780 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHhh----------hHHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchh
Confidence 344444556666665554321 1112334445556666666666666655432 2345555566666666
Q ss_pred HHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHH
Q 006615 457 ADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQK 536 (638)
Q Consensus 457 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 536 (638)
++.|.++|-+. ..++-.|.+|.+.|+++.|.++-.+. .|-......|-+-..-+-.+|++.+|.+
T Consensus 781 fe~ae~lf~e~-------------~~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeq 845 (1636)
T KOG3616|consen 781 FEIAEELFTEA-------------DLFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQ 845 (1636)
T ss_pred HHHHHHHHHhc-------------chhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhh
Confidence 66666666551 23555566666666666666654333 2222334444444444555555555555
Q ss_pred HH
Q 006615 537 LF 538 (638)
Q Consensus 537 l~ 538 (638)
++
T Consensus 846 ly 847 (1636)
T KOG3616|consen 846 LY 847 (1636)
T ss_pred ee
Confidence 44
No 95
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.46 E-value=0.00011 Score=64.65 Aligned_cols=194 Identities=13% Similarity=0.129 Sum_probs=129.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHh
Q 006615 105 LHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK 184 (638)
Q Consensus 105 ~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 184 (638)
.-.+.-.|...|+...|+.-+++.++.. +.+..+|..+...|-+.|..+.|.+-|+...+.. +-+....|..-.-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3445555677788888888777777653 3344567777777778888888888888777654 3456667777777788
Q ss_pred cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHH
Q 006615 185 TGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263 (638)
Q Consensus 185 ~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 263 (638)
.|++++|...|++....-.-| -..||..+.-+..+.|+.+.|.+.|.+-.+.. .-...+.-.+.....+.|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 888888888888777752222 24567777666777788888888887766542 1123456667777777888888888
Q ss_pred HHHHHHhCCCCCCHHHH-HHHHHHHHcCChHHHHHHHHHh
Q 006615 264 LLNEMRDDGKFPGRAMR-VALERMQEMGFIQGANEFLREM 302 (638)
Q Consensus 264 l~~~m~~~g~~p~~~~~-~ll~~~~~~g~~~~a~~~~~~~ 302 (638)
.++.....+. ++.... ..+..-...|+.+.+-++=.++
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 8877776665 444433 4455556667777666655444
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.46 E-value=2.1e-05 Score=75.12 Aligned_cols=154 Identities=18% Similarity=0.154 Sum_probs=74.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCC
Q 006615 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR 495 (638)
Q Consensus 416 ~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 495 (638)
+...|++++|++++..- -+.......+..|.+.++++.|.+.++.|.+... +.-......+.+....-.+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e---D~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDE---DSILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC---CHHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHHhCchh
Confidence 33445555555544321 1344444455555555555555555555544211 00001111222222222345
Q ss_pred hHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHH
Q 006615 496 DFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAAT 575 (638)
Q Consensus 496 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~ 575 (638)
+.+|..+|+++.+. ..++..+.|.+..++...|++++|.+++.+....+ |+ +..+
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--~~----------------------~~d~ 237 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--PN----------------------DPDT 237 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CC----------------------HHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cC----------------------CHHH
Confidence 67777777776553 44566666777777777777777777766655432 22 2334
Q ss_pred HHHHHHHHhccCcH-HHHHHHHHHHHHcc
Q 006615 576 KELLKKSLWKEGRR-KEAAAVEERCEKIN 603 (638)
Q Consensus 576 ~~~li~~~~~~g~~-~~A~~~~~~~~~~~ 603 (638)
...++-+....|+. +.+.+.++++++..
T Consensus 238 LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 238 LANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 44445555555555 55666666665544
No 97
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.43 E-value=0.0032 Score=64.51 Aligned_cols=409 Identities=11% Similarity=0.111 Sum_probs=226.2
Q ss_pred CHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHH
Q 006615 68 DPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWY 147 (638)
Q Consensus 68 ~~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~ 147 (638)
+-...+..|.++|.+..|.+....=. .+..|......+..++.+..-++.|-.+|+++.. +.--+..|
T Consensus 617 d~laaiqlyika~~p~~a~~~a~n~~---~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~f 684 (1636)
T KOG3616|consen 617 DGLAAIQLYIKAGKPAKAARAALNDE---ELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECF 684 (1636)
T ss_pred ccHHHHHHHHHcCCchHHHHhhcCHH---HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHH
Confidence 33446788888888888776543222 2344555666677777777777777777766653 11122222
Q ss_pred HhcCCHHHHHHHHH----------------HHHhcCCCCCH--------HhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 006615 148 STSGDLELVLSTWN----------------EYRQRAKLLST--------ESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203 (638)
Q Consensus 148 ~~~g~~~~A~~l~~----------------~m~~~~~~p~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 203 (638)
-+..-+.+|.++-+ .+.+.| ..|. ...---|.+....+.|.+|+.+++.+.....
T Consensus 685 kkgdaf~kaielarfafp~evv~lee~wg~hl~~~~-q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~ 763 (1636)
T KOG3616|consen 685 KKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIG-QLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKT 763 (1636)
T ss_pred HcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHH-hHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhcc
Confidence 22222233322211 011111 0000 0111123444556788888888888776532
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH-HH
Q 006615 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR-VA 282 (638)
Q Consensus 204 ~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~-~l 282 (638)
-..-|..+...|+..|+++.|+++|-+.- .++.-|..|.+.|+++.|.++-.+. .|.......| .-
T Consensus 764 --~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiak 830 (1636)
T KOG3616|consen 764 --ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAK 830 (1636)
T ss_pred --ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHh
Confidence 23457778889999999999999987543 2677789999999999999987665 3333333444 44
Q ss_pred HHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHH
Q 006615 283 LERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVS 362 (638)
Q Consensus 283 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (638)
..-+-+.|++.+|.+++-.+...
T Consensus 831 aedldehgkf~eaeqlyiti~~p--------------------------------------------------------- 853 (1636)
T KOG3616|consen 831 AEDLDEHGKFAEAEQLYITIGEP--------------------------------------------------------- 853 (1636)
T ss_pred HHhHHhhcchhhhhheeEEccCc---------------------------------------------------------
Confidence 56678888988888877544211
Q ss_pred HhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 006615 363 LLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHD--VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP 440 (638)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~ 440 (638)
-....++.+.|..+..+.+...- .|+ ..|--.+..-+-..|++..|.+-|-+..
T Consensus 854 -----------~~aiqmydk~~~~ddmirlv~k~------h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~------- 909 (1636)
T KOG3616|consen 854 -----------DKAIQMYDKHGLDDDMIRLVEKH------HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------- 909 (1636)
T ss_pred -----------hHHHHHHHhhCcchHHHHHHHHh------ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh-------
Confidence 11234555555555555555432 222 2234455666667777777776554432
Q ss_pred HHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHH-------------------HHHHHHHccCChHHHHH
Q 006615 441 FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS-------------------SLLRTLTKCKRDFDAIN 501 (638)
Q Consensus 441 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------------------~li~~~~~~g~~~~A~~ 501 (638)
-|.+-+++|-..+.+++|.++-+. .++......+...|. .-|+--+..+.++-|..
T Consensus 910 --d~kaavnmyk~s~lw~dayriakt---egg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afd 984 (1636)
T KOG3616|consen 910 --DFKAAVNMYKASELWEDAYRIAKT---EGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFD 984 (1636)
T ss_pred --hHHHHHHHhhhhhhHHHHHHHHhc---cccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHH
Confidence 244566777777777777766553 122122222223332 12222333444444444
Q ss_pred HHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHH-hhhCCCCCCHHHHHHHH
Q 006615 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY-LSNSNLMPDAATKELLK 580 (638)
Q Consensus 502 l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~-m~~~g~~p~~~~~~~li 580 (638)
+-+-..+.. .|.++ .-+..-+-..|++++|-+-+-+.++.+. -..||..-+-.-... ..+.|-+|.. -+
T Consensus 985 lari~~k~k-~~~vh--lk~a~~ledegk~edaskhyveaiklnt--ynitwcqavpsrfd~e~ir~gnkpe~-----av 1054 (1636)
T KOG3616|consen 985 LARIAAKDK-MGEVH--LKLAMFLEDEGKFEDASKHYVEAIKLNT--YNITWCQAVPSRFDAEFIRAGNKPEE-----AV 1054 (1636)
T ss_pred HHHHhhhcc-Cccch--hHHhhhhhhccchhhhhHhhHHHhhccc--ccchhhhcccchhhHHHHHcCCChHH-----HH
Confidence 433333221 22222 1223334567888888887777766431 112221111100001 4567777754 35
Q ss_pred HHHhccCcHHHHHHHHHH
Q 006615 581 KSLWKEGRRKEAAAVEER 598 (638)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~ 598 (638)
..+.+..+|+.|.++-+.
T Consensus 1055 ~mfi~dndwa~aervae~ 1072 (1636)
T KOG3616|consen 1055 EMFIHDNDWAAAERVAEA 1072 (1636)
T ss_pred HHhhhcccHHHHHHHHHh
Confidence 678889999999988765
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.43 E-value=0.002 Score=73.72 Aligned_cols=209 Identities=13% Similarity=0.071 Sum_probs=123.8
Q ss_pred HHHHHhccCChhHHHHHHHHHhcC---CCCc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCC--CHHHHH
Q 006615 376 VCKVLRHFKSPETAWHFFCWVAYQ---PGYT--H-DVYALEKMLTILARHGHVELVDRLIAKLRSD--GMRL--PFSTIR 445 (638)
Q Consensus 376 ~~~~~~~~~~~~~a~~~~~~~~~~---~~~~--p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~~--~~~~~~ 445 (638)
++..+...|+++.|...+...... .+.. + ....+..+...+...|++++|...+.+.... ...+ ....+.
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 344445556666666655543221 1111 1 2233445556677789999999998876542 1112 223444
Q ss_pred HHHHHHcccCCHHHHHHHHHhchhccCCCcch-hH-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcch---hhHHH
Q 006615 446 LIIDFYGISKKADAALKAFHDDRTLCGPISKF-KL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV---QTFSG 520 (638)
Q Consensus 446 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ 520 (638)
.+...+...|+.+.|...++............ .. ...-...+..+...|+.+.|.+.+............ ..+..
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 696 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN 696 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence 45567788999999999998875532211111 00 001111224455689999999998776542211111 11345
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHH
Q 006615 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPD-AATKELLKKSLWKEGRRKEAAAVEERC 599 (638)
Q Consensus 521 li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (638)
+..++...|+.++|...+++..... ...|..++ ..++..+..++.+.|+.++|.+.+.+.
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~-------------------~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENA-------------------RSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHH-------------------HHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6678889999999999998877531 01121222 345566777788889999998888888
Q ss_pred HHcc
Q 006615 600 EKIN 603 (638)
Q Consensus 600 ~~~~ 603 (638)
.+..
T Consensus 758 l~la 761 (903)
T PRK04841 758 LKLA 761 (903)
T ss_pred HHHh
Confidence 7754
No 99
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.0033 Score=63.08 Aligned_cols=176 Identities=15% Similarity=0.066 Sum_probs=115.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHH--HHHHH-
Q 006615 107 ALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV--MSVYA- 183 (638)
Q Consensus 107 ~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l--i~~~~- 183 (638)
+=+......+++++|.+..+++...+ +.+...+.+=+-+..+.+++++|+.+.+.-.. ..++|.. =.+||
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHH
Confidence 34455567789999999999999865 56667788888889999999999966553321 2333433 45665
Q ss_pred -hcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCcc-CHhHHHHHHHHHHccCCHHH
Q 006615 184 -KTGKNFEAVETFRQVIDEGAIPN-SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR-TSKQYLILVEGFVGVERFDE 260 (638)
Q Consensus 184 -~~g~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~ 260 (638)
+.+..++|+..++ |..++ ..+...=...+-+.|++++|.++|+.+.+++..- |...-..|+.+-.
T Consensus 90 Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a------- 157 (652)
T KOG2376|consen 90 YRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA------- 157 (652)
T ss_pred HHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-------
Confidence 5789999999988 33343 3356666677889999999999999997655321 1112222222111
Q ss_pred HHHHHHHHHhCCCCCCHHH---HHHHHHHHHcCChHHHHHHHHHh
Q 006615 261 AKSLLNEMRDDGKFPGRAM---RVALERMQEMGFIQGANEFLREM 302 (638)
Q Consensus 261 A~~l~~~m~~~g~~p~~~~---~~ll~~~~~~g~~~~a~~~~~~~ 302 (638)
+... ..+......|+..+ |+.--.+...|++.+|+++++..
T Consensus 158 ~l~~-~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 158 ALQV-QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred hhhH-HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 1111 13444455554332 34445667899999999999876
No 100
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.34 E-value=9.5e-05 Score=73.51 Aligned_cols=228 Identities=14% Similarity=0.035 Sum_probs=141.6
Q ss_pred HHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHcCChHH
Q 006615 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR--AMRVALERMQEMGFIQG 294 (638)
Q Consensus 217 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~~~~ll~~~~~~g~~~~ 294 (638)
+.+.|++.+|.-.|+...+.. +-+...|--|-.....+++-..|+..+++..+. .|+. +...+-..|...|.-..
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHHH
Confidence 567899999999999877653 236788999999999999999999999888775 4554 44577788999999999
Q ss_pred HHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchH
Q 006615 295 ANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTR 374 (638)
Q Consensus 295 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (638)
|.+.++................ + ++..... +..
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~-------~-~~~~~~~--------~s~------------------------------- 404 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAG-------E-NEDFENT--------KSF------------------------------- 404 (579)
T ss_pred HHHHHHHHHHhCccchhccccC-------c-cccccCC--------cCC-------------------------------
Confidence 9999887743322111110000 0 0000000 000
Q ss_pred HHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccc
Q 006615 375 LVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS 454 (638)
Q Consensus 375 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~ 454 (638)
.....+....++|-.+..+.+..+|......|--.|--.|++++|.+.|+......+. |..+||.|...++..
T Consensus 405 ------~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~ 477 (579)
T KOG1125|consen 405 ------LDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANG 477 (579)
T ss_pred ------CCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCC
Confidence 0011222334455555555554555556666666666677777777777776655433 556677777777777
Q ss_pred CCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHH
Q 006615 455 KKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM 506 (638)
Q Consensus 455 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 506 (638)
.+.++|+..|++..+. +|+.+.++-.|.-.|...|.+++|.+.|-+.
T Consensus 478 ~~s~EAIsAY~rALqL-----qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 478 NRSEEAISAYNRALQL-----QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred cccHHHHHHHHHHHhc-----CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 7777777777766654 4444445555555666777777776666543
No 101
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=0.0013 Score=62.91 Aligned_cols=297 Identities=13% Similarity=0.083 Sum_probs=172.2
Q ss_pred HHHHHHHH--cCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHh-HHHHHHH
Q 006615 70 FIVTHALR--SAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVN-FMNLMQW 146 (638)
Q Consensus 70 ~~~~~~l~--~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~-~~~ll~~ 146 (638)
...+.+++ -.++...|...+-.+.....++-|......+.+.+...|+.++|...|++....+ |+..+ .-...-.
T Consensus 198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~L 275 (564)
T KOG1174|consen 198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVL 275 (564)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHH
Confidence 33444443 3344444444444444333466677778888888888898888888888776532 32221 1111223
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHH
Q 006615 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDS 225 (638)
Q Consensus 147 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~ 225 (638)
+.+.|+.+....+...+.... .-+...|-.-.......++++.|+.+-++..+. .| +...|-.--..+...|+.++
T Consensus 276 L~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG~lL~~~~R~~~ 352 (564)
T KOG1174|consen 276 LGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPRNHEALILKGRLLIALERHTQ 352 (564)
T ss_pred HHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--CcccchHHHhccHHHHhccchHH
Confidence 356777877777777765542 223444555555566677888888888777763 23 33344333455677888888
Q ss_pred HHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH---HHHcCChHHHHHHHHHh
Q 006615 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER---MQEMGFIQGANEFLREM 302 (638)
Q Consensus 226 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~---~~~~g~~~~a~~~~~~~ 302 (638)
|.--|+...... +-+..+|.-|+..|...|++.+|.-+-+..... +..+..+.+++.+ +.....-++|..+++.-
T Consensus 353 A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 353 AVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred HHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 888888766432 236788889999999989888887766554321 1111112222211 11122234455555443
Q ss_pred CcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhc
Q 006615 303 LPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRH 382 (638)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (638)
.+ .++++......++.++..
T Consensus 431 L~------------------------------------------------------------~~P~Y~~AV~~~AEL~~~ 450 (564)
T KOG1174|consen 431 LK------------------------------------------------------------INPIYTPAVNLIAELCQV 450 (564)
T ss_pred hc------------------------------------------------------------cCCccHHHHHHHHHHHHh
Confidence 21 122223333445566666
Q ss_pred cCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006615 383 FKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG 436 (638)
Q Consensus 383 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 436 (638)
.|..+.++.+++.... ..||....+.+-+.+...+.+.+|.+.|......+
T Consensus 451 Eg~~~D~i~LLe~~L~---~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 451 EGPTKDIIKLLEKHLI---IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred hCccchHHHHHHHHHh---hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 6677777766665542 24566666777777777777777777766665543
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.32 E-value=0.00014 Score=72.37 Aligned_cols=227 Identities=15% Similarity=0.071 Sum_probs=175.0
Q ss_pred CCCHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHH
Q 006615 66 LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQ 145 (638)
Q Consensus 66 ~~~~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~ 145 (638)
..+++..-..|.+.|.+.+|.-+|+...+.. +-+...|..|-..-...++-..|+..+.+..+.. +.+......|.-
T Consensus 285 ~pdPf~eG~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAV 361 (579)
T KOG1125|consen 285 HPDPFKEGCNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAV 361 (579)
T ss_pred CCChHHHHHHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHH
Confidence 4567777788889999999999999888664 2345578888888888888888999998888753 445666778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHH-----------HHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHH
Q 006615 146 WYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM-----------SVYAKTGKNFEAVETFRQVID-EGAIPNSRTYTVM 213 (638)
Q Consensus 146 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li-----------~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~ty~~l 213 (638)
.|...|.-..|+..++.-.....+ |-.+. ..+.....+....++|-++.. .+.++|...+..|
T Consensus 362 SytNeg~q~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~L 436 (579)
T KOG1125|consen 362 SYTNEGLQNQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGL 436 (579)
T ss_pred HHhhhhhHHHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhh
Confidence 899999999999999877543210 11111 122333345566777777765 4555788888888
Q ss_pred HHHHHHcCCHHHHHHHHHhcccCCCcc-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCh
Q 006615 214 IEHLVNLGKLDSALEVFSALPLMRIKR-TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFI 292 (638)
Q Consensus 214 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~ 292 (638)
--.|--.|++++|...|+..... +| |...||-|-..++...+.++|+..|.+..+....--.+.|++..+|...|.+
T Consensus 437 GVLy~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~y 514 (579)
T KOG1125|consen 437 GVLYNLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAY 514 (579)
T ss_pred HHHHhcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhH
Confidence 88888999999999999998764 45 6788999999999999999999999999875433334568999999999999
Q ss_pred HHHHHHHHHh
Q 006615 293 QGANEFLREM 302 (638)
Q Consensus 293 ~~a~~~~~~~ 302 (638)
++|...|-..
T Consensus 515 kEA~~hlL~A 524 (579)
T KOG1125|consen 515 KEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHH
Confidence 9999877554
No 103
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.27 E-value=1.4e-06 Score=53.57 Aligned_cols=33 Identities=30% Similarity=0.641 Sum_probs=23.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 006615 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206 (638)
Q Consensus 174 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 206 (638)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777766
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.23 E-value=5.4e-05 Score=77.17 Aligned_cols=139 Identities=16% Similarity=0.068 Sum_probs=106.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChH
Q 006615 418 RHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDF 497 (638)
Q Consensus 418 ~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 497 (638)
+.++++++.+.|+.-...+. .-..+|-.+-.+..+.+++..|.+.|...... .|+....||.+-.+|.+.|+..
T Consensus 497 ~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL-----~Pd~~eaWnNls~ayi~~~~k~ 570 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL-----EPDNAEAWNNLSTAYIRLKKKK 570 (777)
T ss_pred cchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHHHHHHhhc-----CCCchhhhhhhhHHHHHHhhhH
Confidence 36788888888887554432 24567777777888899999999999987754 6776789999999999999999
Q ss_pred HHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHHH
Q 006615 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG-VEPDAYMFKVLIQAYCKY 563 (638)
Q Consensus 498 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~-~~p~~~~~~~li~~~~~~ 563 (638)
+|...+++..+.+ .-+...|...+....+.|.+++|++.+..+.... -.-|..+...++.+..+.
T Consensus 571 ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~~ 636 (777)
T KOG1128|consen 571 RAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLEG 636 (777)
T ss_pred HHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHhh
Confidence 9999999999987 4455667777777889999999999998777432 112555666666666555
No 105
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.22 E-value=2.2e-06 Score=52.61 Aligned_cols=33 Identities=27% Similarity=0.492 Sum_probs=20.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 006615 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549 (638)
Q Consensus 517 t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~ 549 (638)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666655
No 106
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=0.0079 Score=59.79 Aligned_cols=104 Identities=10% Similarity=0.006 Sum_probs=52.3
Q ss_pred HHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHH
Q 006615 75 ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154 (638)
Q Consensus 75 ~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 154 (638)
+....|+++.|+..|-...... +++...|..=..++++.|++++|..=-.+-++.. +.-...|..+..++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHH
Confidence 3445566666666666555432 2344455555566666666665554443333321 111233555555555556666
Q ss_pred HHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 006615 155 LVLSTWNEYRQRAKLLSTESYNIVMSVY 182 (638)
Q Consensus 155 ~A~~l~~~m~~~~~~p~~~~~~~li~~~ 182 (638)
+|+.-|.+=.+.. +.|...++-+..++
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 6666666555443 22333344444443
No 107
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.20 E-value=2.4e-06 Score=52.02 Aligned_cols=33 Identities=27% Similarity=0.543 Sum_probs=20.2
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006615 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP 205 (638)
Q Consensus 173 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 205 (638)
.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666555
No 108
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.14 E-value=3.8e-06 Score=51.10 Aligned_cols=32 Identities=31% Similarity=0.499 Sum_probs=15.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCc
Q 006615 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP 513 (638)
Q Consensus 482 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 513 (638)
+|+++|.+|++.|+.+.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44555555555555555555555555444444
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.13 E-value=0.00044 Score=64.80 Aligned_cols=176 Identities=14% Similarity=-0.020 Sum_probs=127.3
Q ss_pred cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHH
Q 006615 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR-L-PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM 480 (638)
Q Consensus 403 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 480 (638)
......+..+...+...|+++.|...|+++...... | ....+..+..+|...|++++|...++.+.+..+..+.- .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA--D 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch--H
Confidence 335566777888899999999999999998775432 1 12456777888999999999999999988765432221 1
Q ss_pred HHHHHHHHHHHcc--------CChHHHHHHHHHHHhCCCCcchh-hH-----------------HHHHHHHHccCCHHHH
Q 006615 481 LLYSSLLRTLTKC--------KRDFDAINVLEEMIFSGIVPDVQ-TF-----------------SGLMYHFALQGDEKIV 534 (638)
Q Consensus 481 ~~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~-----------------~~li~~~~~~g~~~~a 534 (638)
.++..+...+.+. |+.++|.+.|+++.+. .|+.. .+ ..+...+.+.|++++|
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 185 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAA 185 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHH
Confidence 3455555555544 7889999999999875 34432 11 1344567788999999
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcc
Q 006615 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIN 603 (638)
Q Consensus 535 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 603 (638)
...++...+. .|+. ......+..+..++.+.|++++|...++.+....
T Consensus 186 ~~~~~~al~~--~p~~-------------------~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 186 INRFETVVEN--YPDT-------------------PATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHH--CCCC-------------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999998864 2331 1235677889999999999999999998877643
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.12 E-value=0.00026 Score=66.36 Aligned_cols=183 Identities=15% Similarity=0.110 Sum_probs=108.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-chHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCH-HhHH
Q 006615 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFL-N-VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKL-LST-ESYN 176 (638)
Q Consensus 101 ~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~-~-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~-p~~-~~~~ 176 (638)
....+......+...|+++.|...++++.+.... | ....+..+..++.+.|++++|...++++.+..-. |.. .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3445666666777788888888888877664311 1 1134566777778888888888888887765311 111 1344
Q ss_pred HHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHH
Q 006615 177 IVMSVYAKT--------GKNFEAVETFRQVIDEGAIPNS-RTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247 (638)
Q Consensus 177 ~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 247 (638)
.+..++.+. |+.++|.+.|+...+. .|+. ..+..+... .. .... . ....-.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~~~------~--------~~~~~~ 171 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LRNR------L--------AGKELY 171 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HHHH------H--------HHHHHH
Confidence 444445443 5677777777777764 3432 222211110 00 0000 0 001123
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCC-CCC--HHHHHHHHHHHHcCChHHHHHHHHHhC
Q 006615 248 LVEGFVGVERFDEAKSLLNEMRDDGK-FPG--RAMRVALERMQEMGFIQGANEFLREML 303 (638)
Q Consensus 248 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~--~~~~~ll~~~~~~g~~~~a~~~~~~~~ 303 (638)
+...+.+.|++++|...+++...... .|. ...+.+...+.+.|++++|...++.+.
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55667788888888888888766532 232 244577788888888888888887764
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.12 E-value=0.0011 Score=72.58 Aligned_cols=228 Identities=9% Similarity=0.075 Sum_probs=168.9
Q ss_pred hhhccCCCCHHHHHHHHH---cCCChhHHHHHHHHHHcCCCCCCChh---HHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006615 60 SLLNDRLLDPFIVTHALR---SAPNADSALSIMEALKSNPNFSHNQS---TLHALATVLAKSQRNHELKTLIGDISSSKF 133 (638)
Q Consensus 60 ~~~~~~~~~~~~~~~~l~---~~~~~~~Al~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~l~~~~~~~~~ 133 (638)
.++...+.+...+++-.+ ..++.+.|.++++++...=+++-... .|-+++...-..|.-+...++|++..+..
T Consensus 1449 rlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc- 1527 (1710)
T KOG1070|consen 1449 RLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC- 1527 (1710)
T ss_pred HHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-
Confidence 333444555555555443 66889999999999885433433332 56666666677788888899999988742
Q ss_pred CCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHH
Q 006615 134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN---SRTY 210 (638)
Q Consensus 134 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~ty 210 (638)
..-.+|..|...|.+.+.+++|-++++.|.++ ..-....|...+..+.+..+-+.|.+++.+..+. -|- ....
T Consensus 1528 -d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1528 -DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFI 1603 (1710)
T ss_pred -chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHH
Confidence 23445889999999999999999999999987 3356788999999999999999999999998874 343 2222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHH-
Q 006615 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA--MRVALERMQ- 287 (638)
Q Consensus 211 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--~~~ll~~~~- 287 (638)
.-.+..-.+.|+.+.+..+|+.....- +.-...|+..|+.-.+.|+.+.+..+|++....++.|-.. .|..-..|.
T Consensus 1604 skfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred HHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHH
Confidence 333444567899999999999887642 3356789999999999999999999999999999988653 343333343
Q ss_pred HcCChH
Q 006615 288 EMGFIQ 293 (638)
Q Consensus 288 ~~g~~~ 293 (638)
+.|+-+
T Consensus 1683 ~~Gde~ 1688 (1710)
T KOG1070|consen 1683 SHGDEK 1688 (1710)
T ss_pred hcCchh
Confidence 345433
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.10 E-value=0.0007 Score=60.93 Aligned_cols=158 Identities=16% Similarity=0.095 Sum_probs=123.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhc
Q 006615 106 HALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185 (638)
Q Consensus 106 ~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 185 (638)
..+-..+.-.|+-+....+....... .+.|....+.+.....+.|++..|...|.+..... ++|...||.+--+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 45556666677777776666654432 24455566678888899999999999999998775 78899999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHH
Q 006615 186 GKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL 264 (638)
Q Consensus 186 g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 264 (638)
|++++|..-|.+..+. .| +...+|.|.-.+.-.|+.+.|..++......+ ..|..+-..|..+....|++++|..+
T Consensus 148 Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 9999999999998884 44 45667778888888899999999998877654 33677777888899999999999887
Q ss_pred HHHH
Q 006615 265 LNEM 268 (638)
Q Consensus 265 ~~~m 268 (638)
...-
T Consensus 225 ~~~e 228 (257)
T COG5010 225 AVQE 228 (257)
T ss_pred cccc
Confidence 6654
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.10 E-value=0.00028 Score=72.16 Aligned_cols=214 Identities=13% Similarity=0.041 Sum_probs=170.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHH
Q 006615 69 PFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS 148 (638)
Q Consensus 69 ~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~ 148 (638)
...+...+.+.|-..+|+.+|+... .|.-+|-+|+..|....|..+..+-.+ -+|+...|..+.+...
T Consensus 401 q~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc
Confidence 3456788889999999999999875 566788889999999999998887777 3688888888888777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006615 149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALE 228 (638)
Q Consensus 149 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 228 (638)
..--+++|.++++....+. -..++. .....++++++.+.|+.-.+... .-..||-..-.+..+.+++..|.+
T Consensus 469 d~s~yEkawElsn~~sarA----~r~~~~---~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISARA----QRSLAL---LILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHHH----HHhhcc---ccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHH
Confidence 7777888888888765441 112222 23347899999999998777421 245677777777788999999999
Q ss_pred HHHhcccCCCccC-HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCc
Q 006615 229 VFSALPLMRIKRT-SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLP 304 (638)
Q Consensus 229 ~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 304 (638)
.|..-... .|| ...||.+-.+|.+.++-.+|...+.+..+.+-.+...+-+-+....+-|.+++|.+.+.++..
T Consensus 541 aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 541 AFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 99887753 564 678999999999999999999999999999888888876767778899999999999998854
No 114
>PLN02789 farnesyltranstransferase
Probab=98.10 E-value=0.0028 Score=61.56 Aligned_cols=223 Identities=14% Similarity=0.012 Sum_probs=153.4
Q ss_pred HHHHcCCChhHHHHHHHHHHcCCCCCCC-hhHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615 74 HALRSAPNADSALSIMEALKSNPNFSHN-QSTLHALATVLAKSQ-RNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG 151 (638)
Q Consensus 74 ~~l~~~~~~~~Al~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~-~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g 151 (638)
..+...+..++|+.+...+.+.. |+ ..+|+.--.++...+ .++++...++.+.+.. +.+..+|+..-..+.+.|
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln---P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN---PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcC
Confidence 44566788999999999998653 33 235555555566666 5799999999988754 344455776555556666
Q ss_pred CH--HHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCH---
Q 006615 152 DL--ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL---GKL--- 223 (638)
Q Consensus 152 ~~--~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~---g~~--- 223 (638)
+. ++++.+++.+.+.+ +-|..+|+...-++.+.|+++++++.++++.+.+.. |...|+.....+.+. |..
T Consensus 121 ~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 121 PDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred chhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccccc
Confidence 53 67899999998876 557889999999999999999999999999997654 667777665555444 222
Q ss_pred -HHHHHHHHhcccCCCccCHhHHHHHHHHHHcc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC--------
Q 006615 224 -DSALEVFSALPLMRIKRTSKQYLILVEGFVGV----ERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMG-------- 290 (638)
Q Consensus 224 -~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g-------- 290 (638)
+++.+...++.... +-|...|+-+...+... +...+|.+.+.+..+.++......--++..|+...
T Consensus 199 ~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~ 277 (320)
T PLN02789 199 RDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRD 277 (320)
T ss_pred HHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhh
Confidence 45666665555432 23678898888888773 34567888888876644332223335556665432
Q ss_pred ----------ChHHHHHHHHHhC
Q 006615 291 ----------FIQGANEFLREML 303 (638)
Q Consensus 291 ----------~~~~a~~~~~~~~ 303 (638)
..++|.+++..+.
T Consensus 278 ~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 278 TVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhhccccccccHHHHHHHHHHHH
Confidence 2366888887773
No 115
>PLN02789 farnesyltranstransferase
Probab=98.08 E-value=0.0036 Score=60.78 Aligned_cols=133 Identities=8% Similarity=0.011 Sum_probs=78.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-
Q 006615 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG-KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK- 222 (638)
Q Consensus 145 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~- 222 (638)
..+...++.++|+.+.+.+.+.+ +-+..+|+.--.++.+.| +++++++.++++.+...+ +..+|+.--..+.+.|+
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCch
Confidence 33444556666776666666654 223445555545555555 456777777776664332 33445443333344444
Q ss_pred -HHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 006615 223 -LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR 280 (638)
Q Consensus 223 -~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 280 (638)
.+++..+++++.+.. ..|..+|+...-++.+.|+++++++.++++.+.++....+++
T Consensus 123 ~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~ 180 (320)
T PLN02789 123 AANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWN 180 (320)
T ss_pred hhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHH
Confidence 255666666666543 236677777777777777788888888887777766666654
No 116
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.08 E-value=6.4e-05 Score=57.98 Aligned_cols=78 Identities=19% Similarity=0.349 Sum_probs=62.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHhHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCCCHHHHHH
Q 006615 142 NLMQWYSTSGDLELVLSTWNEYRQRAK-LLSTESYNIVMSVYAKTG--------KNFEAVETFRQVIDEGAIPNSRTYTV 212 (638)
Q Consensus 142 ~ll~~~~~~g~~~~A~~l~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~ty~~ 212 (638)
..|.-+...+++...-.+|+.++..|+ .|++.+||.++.+.++.. ++-..+.+|++|...+++|+..||++
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 445555666899999999999999998 888999999998887743 23456788888988889999999998
Q ss_pred HHHHHHH
Q 006615 213 MIEHLVN 219 (638)
Q Consensus 213 li~~~~~ 219 (638)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8887654
No 117
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.07 E-value=0.002 Score=70.84 Aligned_cols=204 Identities=11% Similarity=0.117 Sum_probs=155.4
Q ss_pred CCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-H
Q 006615 134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLL-----STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN-S 207 (638)
Q Consensus 134 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~ 207 (638)
+.+...|-..|....+.++.+.|.+++++.... +.+ -...|.++++.-...|.-+...++|++..+- -| -
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~ 1530 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAY 1530 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchH
Confidence 455667888999999999999999999998754 212 1346888888888889889999999999884 23 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH----HH
Q 006615 208 RTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRV----AL 283 (638)
Q Consensus 208 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~----ll 283 (638)
..|..|...|.+.+..++|.++++.|.+. +.-...+|...+..+.+..+-+.|.+++.+..+. .|...... ..
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHH
Confidence 46778999999999999999999999863 2246678999999999999999999999988764 33322222 22
Q ss_pred HHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHH
Q 006615 284 ERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSL 363 (638)
Q Consensus 284 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (638)
..-.+.|+.+.+..+|+....
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~----------------------------------------------------------- 1628 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLS----------------------------------------------------------- 1628 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHh-----------------------------------------------------------
Confidence 333566777776666665521
Q ss_pred hhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 006615 364 LADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP 440 (638)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~ 440 (638)
.. +--...|+..|+.=.+.|+.+.++.+|++....++.|-
T Consensus 1629 -----------------------------------ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1629 -----------------------------------AY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred -----------------------------------hC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 11 22345688999999999999999999999999888764
No 118
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.0046 Score=56.57 Aligned_cols=291 Identities=12% Similarity=0.122 Sum_probs=158.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHH-HHHHH
Q 006615 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL-VEGFV 253 (638)
Q Consensus 175 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~ 253 (638)
+.+.+.-+.+..++++|++++..-.+...+ +....+.|-.+|-...++..|-..++++... .|...-|... ...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 444555555555666666665555443211 4455555555555666666666666665542 3433333321 23445
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHH--HHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCC
Q 006615 254 GVERFDEAKSLLNEMRDDGKFPGRAMRV-ALER--MQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNS 330 (638)
Q Consensus 254 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~-ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (638)
+.+.+..|+++...|.+. |....-. -+.+ ..+.+++..+..++++...++-..
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad--------------------- 145 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEAD--------------------- 145 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccc---------------------
Confidence 556666666666665442 1111100 0111 223455555555555543211000
Q ss_pred CccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHH
Q 006615 331 GVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410 (638)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 410 (638)
..+-.+-.+-+.|+++.|.+-|.....-.|+.| ...||
T Consensus 146 -----------------------------------------~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYn 183 (459)
T KOG4340|consen 146 -----------------------------------------GQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYN 183 (459)
T ss_pred -----------------------------------------hhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHH
Confidence 000112233346888999999998888888876 44576
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC-------------CHH--------HHHHHHHH-------HcccCCHHHHHH
Q 006615 411 KMLTILARHGHVELVDRLIAKLRSDGMRL-------------PFS--------TIRLIIDF-------YGISKKADAALK 462 (638)
Q Consensus 411 ~li~~~~~~g~~~~a~~l~~~m~~~g~~~-------------~~~--------~~~~li~~-------~~~~g~~~~A~~ 462 (638)
.-+ +..+.|+++.|+++..+++++|++- |.. .-+.++.+ +.+.|+.+.|.+
T Consensus 184 iAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~e 262 (459)
T KOG4340|consen 184 LAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQE 262 (459)
T ss_pred HHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHH
Confidence 544 5567899999999999999887652 211 11334443 346778888888
Q ss_pred HHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHH
Q 006615 463 AFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540 (638)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~ 540 (638)
.+-.|........+| ++...+.-. -..+++.+..+-++-+.... +-...||..++--||+..-++.|-.++.+
T Consensus 263 aLtDmPPRaE~elDP---vTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 263 ALTDMPPRAEEELDP---VTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HhhcCCCcccccCCc---hhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 887775443333333 233222111 12344444455455555442 23456888888888888877777777654
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.98 E-value=0.0009 Score=60.24 Aligned_cols=119 Identities=13% Similarity=0.150 Sum_probs=73.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH-HHHcCC--HHH
Q 006615 150 SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEH-LVNLGK--LDS 225 (638)
Q Consensus 150 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~-~~~~g~--~~~ 225 (638)
.++.+++...++...+.+ +.|...|..+...|...|++++|...|++..+.. | +...+..+..+ +...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 455566666666655554 4566667777777777777777777777666632 3 45555555554 345555 367
Q ss_pred HHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272 (638)
Q Consensus 226 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 272 (638)
|.+++++..+.. .-+..++..+...+.+.|++++|...|+++.+..
T Consensus 129 A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 129 TREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 777777766543 2255666666677777777777777777765543
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.97 E-value=0.0019 Score=70.19 Aligned_cols=137 Identities=12% Similarity=0.107 Sum_probs=76.3
Q ss_pred HHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHH
Q 006615 443 TIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522 (638)
Q Consensus 443 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 522 (638)
.+..+..+|-+.|+.++|..+|+++.+. +|+.+.+.|.+...|... ++++|++++.+....
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~-----D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~------------- 178 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKA-----DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR------------- 178 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-------------
Confidence 4445555555566666666666655543 233345566666666666 666666666555442
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 006615 523 YHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKI 602 (638)
Q Consensus 523 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (638)
|...+++.++.++|.++.... |+...+ ++.-..+.....|..--..++.-|...|-...+|+++.++++.+.+.
T Consensus 179 --~i~~kq~~~~~e~W~k~~~~~--~~d~d~--f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 179 --FIKKKQYVGIEEIWSKLVHYN--SDDFDF--FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred --HHhhhcchHHHHHHHHHHhcC--cccchH--HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 444556666666666666532 222111 11111111122233444556667777777778888888888888776
Q ss_pred cC
Q 006615 603 ND 604 (638)
Q Consensus 603 ~~ 604 (638)
..
T Consensus 253 ~~ 254 (906)
T PRK14720 253 DN 254 (906)
T ss_pred CC
Confidence 65
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.96 E-value=0.0022 Score=57.78 Aligned_cols=159 Identities=14% Similarity=0.054 Sum_probs=130.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 006615 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220 (638)
Q Consensus 141 ~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 220 (638)
..+-..+.-.|+-+....+....... .+.|....+.++....+.|++..|...|.+.... -++|..+|+.+--+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 45667777788888888877775543 2445667778999999999999999999999874 356899999999999999
Q ss_pred CCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHH
Q 006615 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLR 300 (638)
Q Consensus 221 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~ 300 (638)
|+.+.|..-|.+..+... -+...+|.|.-.|.-.|+.+.|..++......+.....+--++.......|++++|.++..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 999999999998877432 2566788888899999999999999999988776665555688888899999999999875
Q ss_pred Hh
Q 006615 301 EM 302 (638)
Q Consensus 301 ~~ 302 (638)
.-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 43
No 122
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.96 E-value=0.00013 Score=72.41 Aligned_cols=127 Identities=15% Similarity=0.130 Sum_probs=105.7
Q ss_pred cCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcc
Q 006615 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514 (638)
Q Consensus 435 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 514 (638)
.+...+......+++.+....+++.+..++.+.+.........+ .+..++|..|.+.|..++++++++.=...|+-||
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~--~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D 137 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLP--STHHALVRQCLELGAEDELLELLKNRLQYGIFPD 137 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccC--ccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCC
Confidence 34455777788888888888889999988888766533222222 3567999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHH
Q 006615 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY 563 (638)
Q Consensus 515 ~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 563 (638)
..|+|.||..+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 138 ~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 138 NFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999999888888888888888777665
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.96 E-value=0.0024 Score=69.32 Aligned_cols=166 Identities=10% Similarity=0.024 Sum_probs=99.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchH-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 006615 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV-NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM 179 (638)
Q Consensus 101 ~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li 179 (638)
+...+..|+..+...+++++|.++.+...+. .|+.. .|-.+.-.+.+.++.+++..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 4456788888888889999999988866553 23332 233333466677776555544 233
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHH
Q 006615 180 SVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259 (638)
Q Consensus 180 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 259 (638)
+......++.-+..++..|... .-+...+-++..+|-+.|+.++|..+++++.+.. .-|..+.|.+...|+.. +++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 3333333343333333333332 1234466667777777777777777777777654 33566677777777777 777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhC
Q 006615 260 EAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREML 303 (638)
Q Consensus 260 ~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 303 (638)
+|.+++.+.... +....++..+.++|..+.
T Consensus 167 KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~ 196 (906)
T PRK14720 167 KAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLV 196 (906)
T ss_pred HHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHH
Confidence 777777766432 445556666666666654
No 124
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.94 E-value=1.1e-05 Score=47.74 Aligned_cols=29 Identities=38% Similarity=0.635 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006615 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEG 202 (638)
Q Consensus 174 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 202 (638)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 125
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.90 E-value=0.0025 Score=57.40 Aligned_cols=157 Identities=12% Similarity=0.110 Sum_probs=112.1
Q ss_pred HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG 151 (638)
Q Consensus 72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g 151 (638)
.+..|...|+++......+.+.... . . +...++.+++...++...+.. +.+...|..|...|...|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--~----~-------~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--H----Q-------FASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--c----c-------ccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCC
Confidence 3456778888877654443322110 0 1 112455666666666666543 567778889999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH-HhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006615 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVY-AKTGK--NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALE 228 (638)
Q Consensus 152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 228 (638)
++++|...|++....+ +.+...+..+..++ ...|+ .++|.+++++..+.+.. +..++..+...+.+.|++++|..
T Consensus 88 ~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 88 DYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999988875 45677888887764 66676 58999999999986433 67788888888999999999999
Q ss_pred HHHhcccCCCccCHhHH
Q 006615 229 VFSALPLMRIKRTSKQY 245 (638)
Q Consensus 229 ~~~~m~~~g~~p~~~~~ 245 (638)
.|+++.+.. .|+..-+
T Consensus 166 ~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 166 LWQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHHhhC-CCCccHH
Confidence 999987653 4454433
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.90 E-value=0.0011 Score=71.21 Aligned_cols=131 Identities=11% Similarity=0.088 Sum_probs=65.6
Q ss_pred CchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 006615 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVM 213 (638)
Q Consensus 135 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~l 213 (638)
.++..+..|.....+.|.+++|..+++...+.. +-+......+..++.+.+++++|+..+++.... .| +......+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 334445555555555555555555555555542 223334444555555555555555555555553 23 23333444
Q ss_pred HHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006615 214 IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269 (638)
Q Consensus 214 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 269 (638)
-.++.+.|++++|..+|++....+ .-+..++..+-.++-+.|+.++|...|++..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555555555555555555421 1124455555555555555555555555553
No 127
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.90 E-value=1.6e-05 Score=47.12 Aligned_cols=29 Identities=21% Similarity=0.445 Sum_probs=15.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615 517 TFSGLMYHFALQGDEKIVQKLFSMVRQNG 545 (638)
Q Consensus 517 t~~~li~~~~~~g~~~~a~~l~~~m~~~~ 545 (638)
|||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
No 128
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.034 Score=55.51 Aligned_cols=196 Identities=13% Similarity=0.033 Sum_probs=119.1
Q ss_pred HHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-------HHH
Q 006615 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR-------LII 448 (638)
Q Consensus 376 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~-------~li 448 (638)
++...-...+++.|.+.+....... -+..-++..-.+|...|.+...........+.|.. ...-|+ .+.
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhh
Confidence 4555556677888888887765333 35555777778889999988888777777766643 222222 233
Q ss_pred HHHcccCCHHHHHHHHHhchhccCCCcchhHH------------------------HHHHHHHHHHHccCChHHHHHHHH
Q 006615 449 DFYGISKKADAALKAFHDDRTLCGPISKFKLM------------------------LLYSSLLRTLTKCKRDFDAINVLE 504 (638)
Q Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~------------------------~~~~~li~~~~~~g~~~~A~~l~~ 504 (638)
.+|.+.++++.|...|++....+. .|+.. .-.-.=...+.+.|++..|...|.
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~R---t~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHR---TPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhc---CHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 467778889999999988655432 22210 011112445566677777777777
Q ss_pred HHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 006615 505 EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLW 584 (638)
Q Consensus 505 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~ 584 (638)
++++.. +-|...|..-.-+|.+.|.+..|+.=-+..++. .|+. ...|..=..++.
T Consensus 383 eAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~----------------------~kgy~RKg~al~ 437 (539)
T KOG0548|consen 383 EAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNF----------------------IKAYLRKGAALR 437 (539)
T ss_pred HHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchH----------------------HHHHHHHHHHHH
Confidence 777764 235666777777777777777776665555543 2221 222222233334
Q ss_pred ccCcHHHHHHHHHHHHHcc
Q 006615 585 KEGRRKEAAAVEERCEKIN 603 (638)
Q Consensus 585 ~~g~~~~A~~~~~~~~~~~ 603 (638)
-..+|+.|.+.|++..+.+
T Consensus 438 ~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 438 AMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 4456777777777766655
No 129
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.89 E-value=0.0062 Score=64.89 Aligned_cols=179 Identities=15% Similarity=0.087 Sum_probs=119.3
Q ss_pred hhHHHHHHHHHHcCC-CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHH
Q 006615 82 ADSALSIMEALKSNP-NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160 (638)
Q Consensus 82 ~~~Al~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~ 160 (638)
...|+..|-...+.. .+ ...|..+-..|+...+...|.+.|+...+-+ ..+...+..+.+.|++..+++.|..+.
T Consensus 474 ~~~al~ali~alrld~~~---apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSL---APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred HHHHHHHHHHHHhcccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 555665555444332 12 2267777777877778888888888877643 345556778889999999999998884
Q ss_pred HHHHhcCCCCCHHhHHHH--HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCC
Q 006615 161 NEYRQRAKLLSTESYNIV--MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI 238 (638)
Q Consensus 161 ~~m~~~~~~p~~~~~~~l--i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~ 238 (638)
-.-.+.. +.-...+|.+ --.|.+.++...|..-|+...+...+ |...|..+..+|.++|++..|.++|.+....
T Consensus 550 l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 550 LRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred HHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 3333322 1112233333 33467788888888888888774322 6778888999999999999999999877653
Q ss_pred ccCHhHHHH--HHHHHHccCCHHHHHHHHHHHH
Q 006615 239 KRTSKQYLI--LVEGFVGVERFDEAKSLLNEMR 269 (638)
Q Consensus 239 ~p~~~~~~~--li~~~~~~g~~~~A~~l~~~m~ 269 (638)
.|+. +|.. .....+..|.+.+|...+....
T Consensus 626 rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 626 RPLS-KYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3433 2222 2234566788888888877664
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.88 E-value=0.00049 Score=58.45 Aligned_cols=94 Identities=10% Similarity=-0.042 Sum_probs=56.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 006615 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219 (638)
Q Consensus 140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~ 219 (638)
+..+...+.+.|++++|...|+.....+ +.+...|..+..++.+.|++++|...|++..+.. +.+..++..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3344555566666666666666666554 3455666666666666666666666666666532 1255556666666666
Q ss_pred cCCHHHHHHHHHhccc
Q 006615 220 LGKLDSALEVFSALPL 235 (638)
Q Consensus 220 ~g~~~~A~~~~~~m~~ 235 (638)
.|+.++|.+.|+...+
T Consensus 105 ~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 105 MGEPGLAREAFQTAIK 120 (144)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666554
No 131
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.87 E-value=0.00031 Score=54.34 Aligned_cols=82 Identities=10% Similarity=0.166 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCC-CcchhhHHHHHHHHHccC--------CHHHHHHHHHHHHhCCCCCCHh
Q 006615 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGI-VPDVQTFSGLMYHFALQG--------DEKIVQKLFSMVRQNGVEPDAY 551 (638)
Q Consensus 481 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~li~~~~~~g--------~~~~a~~l~~~m~~~~~~p~~~ 551 (638)
.+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+++.|...+++|+..
T Consensus 26 ~t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e 105 (120)
T PF08579_consen 26 ETQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 3445567777777999999999999999999 999999999999887653 2345677889999999999999
Q ss_pred hHHHHHHHHHH
Q 006615 552 MFKVLIQAYCK 562 (638)
Q Consensus 552 ~~~~li~~~~~ 562 (638)
||+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99998887765
No 132
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.86 E-value=0.00019 Score=71.18 Aligned_cols=121 Identities=12% Similarity=0.115 Sum_probs=84.1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHH
Q 006615 100 HNQSTLHALATVLAKSQRNHELKTLIGDISSS--KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI 177 (638)
Q Consensus 100 ~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ 177 (638)
.+......++..+....+++.+..++-+.+.. .......|.+++|+.|.+.|..+.++.+++.=...|+-||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34456666777776667777777777666643 2223334556777777777777777777777777777777777777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 006615 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220 (638)
Q Consensus 178 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 220 (638)
||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777766666667776666666655
No 133
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.86 E-value=0.0021 Score=68.95 Aligned_cols=148 Identities=14% Similarity=0.092 Sum_probs=103.4
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHH
Q 006615 98 FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNI 177 (638)
Q Consensus 98 ~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ 177 (638)
+..+...+-.|..+..+.|++++|..+++...+.. +.+......+...+.+.+++++|+..+++....+ +-+....+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 44556677777788888888888888888877742 3344455667777888888888888888887765 334556666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHH
Q 006615 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV 249 (638)
Q Consensus 178 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 249 (638)
+-.++.+.|++++|.++|++....+ .-+..++..+-..+-+.|+.++|...|+...+.- .+.+..|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 7777788888888888888888732 2246777777777888888888888888775421 23444444443
No 134
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.85 E-value=0.0094 Score=63.57 Aligned_cols=161 Identities=15% Similarity=0.069 Sum_probs=120.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH--HH
Q 006615 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM--IE 215 (638)
Q Consensus 138 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~l--i~ 215 (638)
..|..|...|+..-+...|.+.|+...+.+ ..|...+....+.|++..+++.|..+.-.--+.. +--...+|.+ --
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccc
Confidence 357888888888888999999999988876 4568889999999999999999999843333321 1122233333 33
Q ss_pred HHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHcCChH
Q 006615 216 HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM--RVALERMQEMGFIQ 293 (638)
Q Consensus 216 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~--~~ll~~~~~~g~~~ 293 (638)
.|.+.++...|..-|+...... +.|...|..+..+|...|++..|.++|.+... +.|+..+ |-.-..-+..|.+.
T Consensus 571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLSKYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHhHHHHHHHHHHHHHhhhHH
Confidence 4677889999999998877643 34788999999999999999999999998865 4455433 33334457889999
Q ss_pred HHHHHHHHhC
Q 006615 294 GANEFLREML 303 (638)
Q Consensus 294 ~a~~~~~~~~ 303 (638)
++...+..+.
T Consensus 648 eald~l~~ii 657 (1238)
T KOG1127|consen 648 EALDALGLII 657 (1238)
T ss_pred HHHHHHHHHH
Confidence 9999887764
No 135
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.85 E-value=0.04 Score=55.00 Aligned_cols=151 Identities=14% Similarity=0.151 Sum_probs=116.7
Q ss_pred hhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHcccCCHHHHHHHH
Q 006615 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRL-PFSTIRLIIDFYGISKKADAALKAF 464 (638)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 464 (638)
.+...+.+..........|+ .+|...|...-+..-+..|..+|.+..+.+..+ ++.++++++.-|| .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 44444555555444444443 457888888888888999999999999998887 7788888888777 57888999999
Q ss_pred HhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcc--hhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 006615 465 HDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD--VQTFSGLMYHFALQGDEKIVQKLFSMVR 542 (638)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~l~~~m~ 542 (638)
+.-....+..+ .--...++-+...|+-..|..+|++....++.|| ...|..+|.-=+..|++..+.++-+++.
T Consensus 425 eLGLkkf~d~p-----~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 425 ELGLKKFGDSP-----EYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHHhcCCCh-----HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 98666544322 3445667777888999999999999999877765 4689999999999999999998887766
Q ss_pred h
Q 006615 543 Q 543 (638)
Q Consensus 543 ~ 543 (638)
.
T Consensus 500 ~ 500 (656)
T KOG1914|consen 500 T 500 (656)
T ss_pred H
Confidence 4
No 136
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.019 Score=51.99 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=72.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcc----cCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHH
Q 006615 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGI----SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTL 490 (638)
Q Consensus 415 ~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 490 (638)
.+.+..+++-|...+++|.+-. +..|.+-|.+++.+ .+.+.+|+-+|+++.++.++.+ .+-+-...++
T Consensus 146 I~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~-----~llnG~Av~~ 217 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTP-----LLLNGQAVCH 217 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCCh-----HHHccHHHHH
Confidence 3455666777777777777543 45666655555533 3457777777777776543322 4566667777
Q ss_pred HccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCH-HHHHHHHHHHHh
Q 006615 491 TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDE-KIVQKLFSMVRQ 543 (638)
Q Consensus 491 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~-~~a~~l~~~m~~ 543 (638)
...|++++|..++++......+ +..|...+|.+-...|.- +-..+.+..++.
T Consensus 218 l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 218 LQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 7778888888888877776433 444555555444444443 334445555554
No 137
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.79 E-value=0.0019 Score=54.88 Aligned_cols=109 Identities=7% Similarity=-0.028 Sum_probs=89.4
Q ss_pred HHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCC
Q 006615 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237 (638)
Q Consensus 158 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g 237 (638)
.+|++..+.+ |+ .+..+...+...|++++|...|+....... .+...|..+...+.+.|++++|...|+......
T Consensus 14 ~~~~~al~~~--p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSVD--PE--TVYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHcC--HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4566665544 43 355677888899999999999999988532 378888999999999999999999999998754
Q ss_pred CccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272 (638)
Q Consensus 238 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 272 (638)
..+...+..+..++.+.|++++|...|++.....
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3477889999999999999999999999987744
No 138
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.0073 Score=54.60 Aligned_cols=217 Identities=15% Similarity=0.125 Sum_probs=140.3
Q ss_pred HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHH-HHHHHHHHhCCCCCchHhHHHHHHHHHhc
Q 006615 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHEL-KTLIGDISSSKFLNVSVNFMNLMQWYSTS 150 (638)
Q Consensus 72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a-~~l~~~~~~~~~~~~~~~~~~ll~~~~~~ 150 (638)
+.++|...|.+...+. .+... -.|+......+...+..-++.+.. .++.+.+.......+......-...|++.
T Consensus 47 ~~raylAlg~~~~~~~---eI~~~--~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~ 121 (299)
T KOG3081|consen 47 MYRAYLALGQYQIVIS---EIKEG--KATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHD 121 (299)
T ss_pred HHHHHHHccccccccc---ccccc--cCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcC
Confidence 5566666666543322 22221 133333333333333333333332 33455555444444434344445678899
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 006615 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN----LGKLDSA 226 (638)
Q Consensus 151 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A 226 (638)
|++++|++...... + ..+...=+..+.+..+++-|.+.+++|.+. -+..|.+-|..+|.+ .+.+.+|
T Consensus 122 ~~~deAl~~~~~~~--~----lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdA 192 (299)
T KOG3081|consen 122 GDFDEALKALHLGE--N----LEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDA 192 (299)
T ss_pred CChHHHHHHHhccc--h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhH
Confidence 99999999887621 2 444444456677888999999999999984 367888888888875 3568999
Q ss_pred HHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHH-HHHHHHHhC
Q 006615 227 LEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQG-ANEFLREML 303 (638)
Q Consensus 227 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~-a~~~~~~~~ 303 (638)
.-+|++|.+. ..|+.-+.|-+..++...|++++|..++++..........+..+++..-...|...+ ..+.+.++.
T Consensus 193 fyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 193 FYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 9999999863 368888899999999999999999999999987765543344455555455555444 445555553
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.77 E-value=0.0013 Score=65.22 Aligned_cols=125 Identities=18% Similarity=0.252 Sum_probs=97.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006615 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218 (638)
Q Consensus 139 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~ 218 (638)
.-..|+..+...++++.|..+|+++.+.. |++ .-.++..+...++-.+|.+++.+..+.. +-+......-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34456677777788999999999998876 543 4457788888888889999988888652 226666666677788
Q ss_pred HcCCHHHHHHHHHhcccCCCccC-HhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615 219 NLGKLDSALEVFSALPLMRIKRT-SKQYLILVEGFVGVERFDEAKSLLNEMRD 270 (638)
Q Consensus 219 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 270 (638)
+.++.+.|.++.+++.+. .|+ ..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 999999999999988874 465 45899999999999999999998887743
No 140
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.76 E-value=0.037 Score=51.97 Aligned_cols=188 Identities=11% Similarity=0.061 Sum_probs=106.3
Q ss_pred HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHH---HHHHhcCChHHHHHHHHHHHhCCCCCchHhHH-HHHHHH
Q 006615 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALA---TVLAKSQRNHELKTLIGDISSSKFLNVSVNFM-NLMQWY 147 (638)
Q Consensus 72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~-~ll~~~ 147 (638)
+-..+...|.+..|+.-|....+.+ |+ .|.++. ..|...|+-..|..-+.+.++. .||-..-. .-...+
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~d---p~--~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGD---PN--NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCC---ch--hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 5567778899999999999888653 43 454444 3466778888888877777763 46643211 122456
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHh--------------HH--HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 006615 148 STSGDLELVLSTWNEYRQRAKLLSTES--------------YN--IVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT 211 (638)
Q Consensus 148 ~~~g~~~~A~~l~~~m~~~~~~p~~~~--------------~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~ 211 (638)
.+.|.++.|..=|+...+.+ |+..+ |+ ..+..+.-.|+...|++....+.+- .+.|...|.
T Consensus 117 lK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~ 193 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQ 193 (504)
T ss_pred hhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHH
Confidence 78999999999999988765 32111 11 1122233445555555555555552 112444455
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270 (638)
Q Consensus 212 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 270 (638)
.-..+|...|++..|..=+....+.. .-++.++--+-..+...|+.+.++..+++..+
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 55555555555555544433333221 12333444444455555555555555555543
No 141
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.76 E-value=0.025 Score=55.83 Aligned_cols=82 Identities=15% Similarity=0.046 Sum_probs=37.3
Q ss_pred HcCCHHHHHHHHHhcccCCCccCHh-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHH
Q 006615 219 NLGKLDSALEVFSALPLMRIKRTSK-QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANE 297 (638)
Q Consensus 219 ~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~ 297 (638)
..|.+++|+..++.+... .||.. -+....+.+.+.++.++|.+.++++......--...++.-.++.+.|+.++|..
T Consensus 318 ~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 345555555555554432 23322 223333455555555555555555544322211222344455555555555555
Q ss_pred HHHHh
Q 006615 298 FLREM 302 (638)
Q Consensus 298 ~~~~~ 302 (638)
+++..
T Consensus 396 ~L~~~ 400 (484)
T COG4783 396 ILNRY 400 (484)
T ss_pred HHHHH
Confidence 55443
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.76 E-value=0.0015 Score=64.80 Aligned_cols=123 Identities=11% Similarity=0.085 Sum_probs=96.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHcc
Q 006615 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255 (638)
Q Consensus 176 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 255 (638)
..|+..+...++++.|.++|+++.+.. |+ ....+.+.+...++-.+|.+++.+..+.. +.|......-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344555666789999999999999864 55 44557888888888889999988877532 33666677777788899
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhC
Q 006615 256 ERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREML 303 (638)
Q Consensus 256 g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 303 (638)
++++.|+++.+++.......-..|+.+..+|.+.|+++.|+..+..+.
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999987654444456788999999999999999998875
No 143
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.75 E-value=0.00033 Score=61.35 Aligned_cols=104 Identities=13% Similarity=0.258 Sum_probs=63.0
Q ss_pred CchHhHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 006615 135 NVSVNFMNLMQWYST-----SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRT 209 (638)
Q Consensus 135 ~~~~~~~~ll~~~~~-----~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 209 (638)
.+..+|..+++.|.+ .|.++-....+..|.+-|+.-|..+|+.||+.+=+ |.+- -..+|+.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~----------- 111 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE----------- 111 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-----------
Confidence 455556666666653 36677777777888888888888888888877765 3322 11111111
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCC
Q 006615 210 YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257 (638)
Q Consensus 210 y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 257 (638)
..-|- .+-+-|.+++++|...|+-||..++..|++.+++.+.
T Consensus 112 ----F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 ----FMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----hccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111 2345566777777777777777777777777766554
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.73 E-value=0.0019 Score=55.04 Aligned_cols=125 Identities=14% Similarity=0.157 Sum_probs=77.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHH
Q 006615 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS---TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNS--RTYTVMI 214 (638)
Q Consensus 140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~ty~~li 214 (638)
|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|+........|+. ...-.|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 45555555 4677777777777777654 222 122223345677778888888888887776522221 2333455
Q ss_pred HHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 006615 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268 (638)
Q Consensus 215 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 268 (638)
..+...|++++|...++......+ ....+....+.|.+.|+.++|...|++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 667777888888888766544322 3345566667788888888888777653
No 145
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.72 E-value=0.0021 Score=54.14 Aligned_cols=93 Identities=15% Similarity=0.088 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhc
Q 006615 106 HALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185 (638)
Q Consensus 106 ~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 185 (638)
..+...+...|++++|...++.....+ +.+...+..+...+.+.|++++|...+++....+ +.+...+..+...+...
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHc
Confidence 333344444555555555555544432 2233444444555555555555555555544432 22344444444455555
Q ss_pred CChHHHHHHHHHHHH
Q 006615 186 GKNFEAVETFRQVID 200 (638)
Q Consensus 186 g~~~~A~~~~~~m~~ 200 (638)
|++++|...|+...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555554444
No 146
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.029 Score=50.48 Aligned_cols=190 Identities=11% Similarity=0.138 Sum_probs=138.6
Q ss_pred CCChhHHHHHHHHHHc--CCC-CCCChh-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHH
Q 006615 79 APNADSALSIMEALKS--NPN-FSHNQS-TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154 (638)
Q Consensus 79 ~~~~~~Al~~~~~~~~--~~~-~~~~~~-~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 154 (638)
..+.++.++++..+.. ..+ ..++.. .|..++-+....|+.+.|..+++.+...- +.+..+-..-.-.+-..|+.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 3567888888888762 123 455554 36667777778899999999999988754 333222222222344568999
Q ss_pred HHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 006615 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234 (638)
Q Consensus 155 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 234 (638)
+|.++++.+.+.+ +.|.++|--=+...-..|+--+|++-+.+..+. +.-|...|.-+-..|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999999987 667888887777777778888898888888875 55699999999999999999999999999987
Q ss_pred cCCCccCHh-HHHHHHHHHHc---cCCHHHHHHHHHHHHhCCC
Q 006615 235 LMRIKRTSK-QYLILVEGFVG---VERFDEAKSLLNEMRDDGK 273 (638)
Q Consensus 235 ~~g~~p~~~-~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~ 273 (638)
-. .|-.. .+..+...+.- ..+.+.|.+.|.+..+...
T Consensus 182 l~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 182 LI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred Hc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 63 45433 34444444443 3456778889988877554
No 147
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.69 E-value=0.011 Score=58.19 Aligned_cols=136 Identities=15% Similarity=0.140 Sum_probs=104.0
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHH
Q 006615 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN-SRTYTVMIEHLVNLGKLDS 225 (638)
Q Consensus 147 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~ 225 (638)
+...|++++|+..++.+... .+-|..-+......+.+.++.++|.+.++.+.. ..|+ ....-.+-.++.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHH
Confidence 44678889999999987765 344556666667888899999999999999888 4566 4444566678889999999
Q ss_pred HHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhC
Q 006615 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREML 303 (638)
Q Consensus 226 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 303 (638)
|.++++...... +-|...|..|-.+|...|+..++..-..++ +...|+++.|..+.....
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~-----------------~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG-----------------YALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH-----------------HHhCCCHHHHHHHHHHHH
Confidence 999888876543 447788999999999999988888877665 445677777777776653
No 148
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.67 E-value=0.0015 Score=54.98 Aligned_cols=102 Identities=13% Similarity=-0.014 Sum_probs=60.8
Q ss_pred HHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHH
Q 006615 444 IRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523 (638)
Q Consensus 444 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 523 (638)
...+...+...|++++|...|+..... .|+....|..+...+.+.|++++|...++...+.+ +.+...+..+-.
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAY-----DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 344445555666666666666665443 22223556666667777777777777777666543 224555555666
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHhhH
Q 006615 524 HFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553 (638)
Q Consensus 524 ~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~ 553 (638)
.+...|++++|...|+...+. .|+...+
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 121 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI--CGENPEY 121 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--ccccchH
Confidence 777777777777777766663 3444443
No 149
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.59 E-value=0.15 Score=54.33 Aligned_cols=220 Identities=13% Similarity=0.080 Sum_probs=138.5
Q ss_pred HcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHH--HhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHH
Q 006615 77 RSAPNADSALSIMEALKSNPNFSHNQSTLHALATVL--AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154 (638)
Q Consensus 77 ~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 154 (638)
...+++..|+.-...+.++. |+. .|..+++++ .+.|+.++|..+++.....+.. |..|...+...|-..|+.+
T Consensus 20 ld~~qfkkal~~~~kllkk~---Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH---PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC---CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 35577888888888887653 332 456666665 5788889998888877665443 7778888889999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----------CHH
Q 006615 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG----------KLD 224 (638)
Q Consensus 155 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g----------~~~ 224 (638)
+|..+|++..+.. |+..-...+..+|++.+.+.+-.+.=-+|-+. ++-+.+.|=.+++.....- -+-
T Consensus 95 ~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 9999999988765 66777777788888887776544433333331 2335666666666654321 134
Q ss_pred HHHHHHHhcccCCCcc-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHcCChHHHHHHHHH
Q 006615 225 SALEVFSALPLMRIKR-TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMR--VALERMQEMGFIQGANEFLRE 301 (638)
Q Consensus 225 ~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~--~ll~~~~~~g~~~~a~~~~~~ 301 (638)
-|.+.++.+.+.+-+- +..=.-.-...+...|++++|.+++..-......+.+... --+.-+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4666666666533011 1111222234455678888998888543333333322222 334556677788877777666
Q ss_pred hCc
Q 006615 302 MLP 304 (638)
Q Consensus 302 ~~~ 304 (638)
+..
T Consensus 252 Ll~ 254 (932)
T KOG2053|consen 252 LLE 254 (932)
T ss_pred HHH
Confidence 543
No 150
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.56 E-value=0.076 Score=49.96 Aligned_cols=158 Identities=11% Similarity=0.013 Sum_probs=104.2
Q ss_pred ccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHH
Q 006615 382 HFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAAL 461 (638)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 461 (638)
..|+...|++...++.... +-|...|..-..+|...|++.+|+.=++...+..-. +..++-.+-..+...|+.+.++
T Consensus 167 ~~GD~~~ai~~i~~llEi~--~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 167 GSGDCQNAIEMITHLLEIQ--PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred cCCchhhHHHHHHHHHhcC--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHH
Confidence 3578888888888876544 457778888888999999999987766655544322 4455556667778888988888
Q ss_pred HHHHhchhccCCCcchhHHHH---HHH-------H--HHHHHccCChHHHHHHHHHHHhCCCCcchhh---HHHHHHHHH
Q 006615 462 KAFHDDRTLCGPISKFKLMLL---YSS-------L--LRTLTKCKRDFDAINVLEEMIFSGIVPDVQT---FSGLMYHFA 526 (638)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~---~~~-------l--i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~li~~~~ 526 (638)
...++..+. +|+.-.. |-. | +......+++.++++-.+...+..-.-..++ +..+-.++.
T Consensus 244 ~~iRECLKl-----dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~ 318 (504)
T KOG0624|consen 244 KEIRECLKL-----DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYR 318 (504)
T ss_pred HHHHHHHcc-----CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccc
Confidence 888877654 3332111 211 1 2234456777777777777766532212333 345556777
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCC
Q 006615 527 LQGDEKIVQKLFSMVRQNGVEPD 549 (638)
Q Consensus 527 ~~g~~~~a~~l~~~m~~~~~~p~ 549 (638)
..|++.+|++.-.+..+ +.||
T Consensus 319 ~d~~~~eAiqqC~evL~--~d~~ 339 (504)
T KOG0624|consen 319 EDEQFGEAIQQCKEVLD--IDPD 339 (504)
T ss_pred ccCCHHHHHHHHHHHHh--cCch
Confidence 88899999988888876 3444
No 151
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.50 E-value=0.13 Score=51.47 Aligned_cols=140 Identities=11% Similarity=0.080 Sum_probs=94.2
Q ss_pred HHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCc-chhhHHHHHHHHHccCCHHHHH
Q 006615 457 ADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP-DVQTFSGLMYHFALQGDEKIVQ 535 (638)
Q Consensus 457 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~ 535 (638)
.+.....+++...... .+|+ .+|...++.-.+..-++.|..+|.+..+.+..+ .+..++++|.-||. ++.+-|.
T Consensus 347 ~~~~~~~~~~ll~~~~--~~~t--Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~Af 421 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIED--IDLT--LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAF 421 (656)
T ss_pred hhhhHHHHHHHHhhhc--cCCc--eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHH
Confidence 4444445554443322 2343 478888888888888889999999999888777 78888888888774 6778888
Q ss_pred HHHHHHHhCCCCCCHhhH-HHHHHHHHHH------------hhhCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 006615 536 KLFSMVRQNGVEPDAYMF-KVLIQAYCKY------------LSNSNLMPD--AATKELLKKSLWKEGRRKEAAAVEERCE 600 (638)
Q Consensus 536 ~l~~~m~~~~~~p~~~~~-~~li~~~~~~------------m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 600 (638)
++|+-=.++ -+|...| ...++-+.+. ....++.|| ...|..+++-=..-|+...+.++-+++.
T Consensus 422 rIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 422 RIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 888754432 1233222 2333333332 333366665 5689999999999999999999988877
Q ss_pred Hcc
Q 006615 601 KIN 603 (638)
Q Consensus 601 ~~~ 603 (638)
..-
T Consensus 500 ~af 502 (656)
T KOG1914|consen 500 TAF 502 (656)
T ss_pred Hhc
Confidence 643
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.45 E-value=0.0061 Score=51.95 Aligned_cols=125 Identities=12% Similarity=0.104 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCch---HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HhHHHH
Q 006615 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVS---VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST--ESYNIV 178 (638)
Q Consensus 104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~--~~~~~l 178 (638)
.|..++..+ ..++...+...++.+.+.. +.+. ...-.+...+...|++++|...|+........|+. ...-.|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 445555554 3677777777777777643 2221 22223556777778888888888888776522221 233445
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 006615 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232 (638)
Q Consensus 179 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~ 232 (638)
...+...|++++|+..++...... .....+...-..|.+.|+.++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 667777888888888886643322 2344555666778888888888887765
No 153
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.44 E-value=0.0028 Score=55.71 Aligned_cols=118 Identities=8% Similarity=0.159 Sum_probs=81.1
Q ss_pred CCChhHHHHHHHHHH-----hcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH
Q 006615 99 SHNQSTLHALATVLA-----KSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTE 173 (638)
Q Consensus 99 ~~~~~~~~~li~~~~-----~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 173 (638)
..+..+|..++..+. +.|..+-....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 345667777777775 357888888899999999999999999999999876 4432 112222221
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHhccc
Q 006615 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK-LDSALEVFSALPL 235 (638)
Q Consensus 174 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~-~~~A~~~~~~m~~ 235 (638)
.-|- .+-+-|++++++|...|+-||..|+..|++.+++.+. +.+..++.-.|.+
T Consensus 113 ------~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 113 ------MHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred ------ccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 1111 2446678888888888888888888888888877664 3344444444443
No 154
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.33 E-value=0.15 Score=49.16 Aligned_cols=118 Identities=12% Similarity=0.116 Sum_probs=74.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccc-CCHHHHHHHHHhchhccCCCcch-hHHHHHHHHHHH
Q 006615 412 MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS-KKADAALKAFHDDRTLCGPISKF-KLMLLYSSLLRT 489 (638)
Q Consensus 412 li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~li~~ 489 (638)
.+..|...|++..|-+++.. +...|-.. |++++|.+.|++..+.......+ .....+..+...
T Consensus 100 A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 45566666766666554443 44566666 78888888888765543222221 123567778888
Q ss_pred HHccCChHHHHHHHHHHHhCCCC-----cchh-hHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615 490 LTKCKRDFDAINVLEEMIFSGIV-----PDVQ-TFSGLMYHFALQGDEKIVQKLFSMVRQN 544 (638)
Q Consensus 490 ~~~~g~~~~A~~l~~~m~~~g~~-----p~~~-t~~~li~~~~~~g~~~~a~~l~~~m~~~ 544 (638)
+.+.|++++|.++|++....-.. .+.. .|-..+-++...|+...|.+.+++....
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999998775332 2222 2233344666779999999999998864
No 155
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.33 E-value=0.0056 Score=58.61 Aligned_cols=130 Identities=9% Similarity=0.149 Sum_probs=82.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006615 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRA-KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216 (638)
Q Consensus 138 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~ 216 (638)
.+|..+++..-+.+..+.|..+|.+..+.+ +..++....+++.. ...++.+.|..+|+...+. +.-+...|..-++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356777777777777777777777777543 22333333333332 2245666677787777765 34456666667777
Q ss_pred HHHcCCHHHHHHHHHhcccCCCcc---CHhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615 217 LVNLGKLDSALEVFSALPLMRIKR---TSKQYLILVEGFVGVERFDEAKSLLNEMRD 270 (638)
Q Consensus 217 ~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 270 (638)
+.+.|+.+.|..+|++.... +.+ ....|...+..=.+.|+.+.+..+.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777888888888776653 222 224788888888888888888888887765
No 156
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.28 E-value=0.084 Score=50.81 Aligned_cols=63 Identities=17% Similarity=0.018 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHcccCCHHHHHHHHHhchhc
Q 006615 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMR-----LPFS-TIRLIIDFYGISKKADAALKAFHDDRTL 470 (638)
Q Consensus 408 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-----~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~ 470 (638)
.+..+...+.+.|++++|.++|++....-.. .+.. .+-..+-++...|++..|.+.|++....
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455666777788888888888777654322 1111 1222222444456666666666665544
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.23 E-value=0.0095 Score=48.63 Aligned_cols=58 Identities=14% Similarity=0.222 Sum_probs=23.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006615 143 LMQWYSTSGDLELVLSTWNEYRQRAK--LLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200 (638)
Q Consensus 143 ll~~~~~~g~~~~A~~l~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 200 (638)
+...+.+.|++++|...|+.+....- ......+..+..++.+.|+++.|...|+....
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 67 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK 67 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 33344444444444444444443220 00012333344444444444444444444443
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.23 E-value=0.0054 Score=47.33 Aligned_cols=89 Identities=24% Similarity=0.352 Sum_probs=38.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 006615 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222 (638)
Q Consensus 143 ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~ 222 (638)
+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.|+...+... .+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHh
Confidence 3344444455555555555444332 12223344444444444555555555544444221 122334444444444444
Q ss_pred HHHHHHHHHhc
Q 006615 223 LDSALEVFSAL 233 (638)
Q Consensus 223 ~~~A~~~~~~m 233 (638)
.++|.+.+...
T Consensus 84 ~~~a~~~~~~~ 94 (100)
T cd00189 84 YEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.22 E-value=0.0053 Score=47.37 Aligned_cols=96 Identities=20% Similarity=0.283 Sum_probs=71.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHH
Q 006615 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253 (638)
Q Consensus 174 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 253 (638)
+|..+...+...|++++|...+++..+... .+...+..+...+...|++++|.+.|+...... ..+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 355667777888889999999888877422 234667777778888888888888888876643 234467777888888
Q ss_pred ccCCHHHHHHHHHHHHhC
Q 006615 254 GVERFDEAKSLLNEMRDD 271 (638)
Q Consensus 254 ~~g~~~~A~~l~~~m~~~ 271 (638)
..|++++|...+.+..+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 888888888888776543
No 160
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.15 E-value=0.012 Score=56.37 Aligned_cols=129 Identities=12% Similarity=0.076 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 006615 104 TLHALATVLAKSQRNHELKTLIGDISSSKF-LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVY 182 (638)
Q Consensus 104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 182 (638)
+|-.+++.+-+.+..+.|+.+|.+.++.+. ..+.+...+++. |...++.+.|..+|+...+. ++.+...|...++-+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 567777777777778888888888775432 334433334443 22345666688888887765 556677788888888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhccc
Q 006615 183 AKTGKNFEAVETFRQVIDEGAIPN---SRTYTVMIEHLVNLGKLDSALEVFSALPL 235 (638)
Q Consensus 183 ~~~g~~~~A~~~~~~m~~~g~~p~---~~ty~~li~~~~~~g~~~~A~~~~~~m~~ 235 (638)
.+.++.+.|..+|++.... +.++ ...|...+..=.+.|+++.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888887765 3222 23777777777778888888888777765
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.11 E-value=0.019 Score=50.53 Aligned_cols=88 Identities=10% Similarity=-0.036 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHH
Q 006615 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP--FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLL 482 (638)
Q Consensus 405 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 482 (638)
....+..+...+...|++++|...|++.......+. ...+..+...|.+.|++++|...+++..+. .|+....
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~ 108 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL-----NPKQPSA 108 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcccHHH
Confidence 344567777788888999999999998876544332 356777788888889999999988887764 2333356
Q ss_pred HHHHHHHHHccCChH
Q 006615 483 YSSLLRTLTKCKRDF 497 (638)
Q Consensus 483 ~~~li~~~~~~g~~~ 497 (638)
+..+...+...|+..
T Consensus 109 ~~~lg~~~~~~g~~~ 123 (172)
T PRK02603 109 LNNIAVIYHKRGEKA 123 (172)
T ss_pred HHHHHHHHHHcCChH
Confidence 666677777766643
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.09 E-value=0.002 Score=48.83 Aligned_cols=79 Identities=16% Similarity=0.319 Sum_probs=34.6
Q ss_pred CChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccC-HhHHHHHHHHHHccCCHHHHHH
Q 006615 186 GKNFEAVETFRQVIDEGA-IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT-SKQYLILVEGFVGVERFDEAKS 263 (638)
Q Consensus 186 g~~~~A~~~~~~m~~~g~-~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~ 263 (638)
|+++.|+.+|+++.+... .|+...+-.+..+|.+.|++++|.++++. .+ ..++ ....-.+..+|.+.|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 455555555555555321 11222333345555555555555555555 11 1121 1222233455555555555555
Q ss_pred HHHH
Q 006615 264 LLNE 267 (638)
Q Consensus 264 l~~~ 267 (638)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 163
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.05 E-value=0.026 Score=45.98 Aligned_cols=98 Identities=11% Similarity=0.020 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCHHhHHHHH
Q 006615 104 TLHALATVLAKSQRNHELKTLIGDISSSKF--LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA--KLLSTESYNIVM 179 (638)
Q Consensus 104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~--~~p~~~~~~~li 179 (638)
++..+...+.+.|++++|...++.+.+... ......+..+...+.+.|+++.|...|+.+.... .+....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 445556666667777777777777665321 1112344556777777777777777777776542 111234566666
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 006615 180 SVYAKTGKNFEAVETFRQVIDE 201 (638)
Q Consensus 180 ~~~~~~g~~~~A~~~~~~m~~~ 201 (638)
.++.+.|+.++|...+++..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6777777777777777777765
No 164
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.99 E-value=0.0033 Score=47.63 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=9.6
Q ss_pred HHHHHHccCChHHHHHHHHH
Q 006615 486 LLRTLTKCKRDFDAINVLEE 505 (638)
Q Consensus 486 li~~~~~~g~~~~A~~l~~~ 505 (638)
+..+|.+.|++++|.++++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 44444444444444444444
No 165
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.98 E-value=0.039 Score=46.43 Aligned_cols=92 Identities=7% Similarity=-0.058 Sum_probs=57.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 006615 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG 221 (638)
Q Consensus 142 ~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 221 (638)
.+..-+...|++++|..+|+-+...+ +-+..-|-.|--++-..|++++|+..|.......+ -|...+-.+-.++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcC
Confidence 34444556677777777777666654 22344455566666666777777777777666442 25666666666677777
Q ss_pred CHHHHHHHHHhccc
Q 006615 222 KLDSALEVFSALPL 235 (638)
Q Consensus 222 ~~~~A~~~~~~m~~ 235 (638)
+.+.|.+.|+....
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 77777776665543
No 166
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.96 E-value=0.014 Score=51.27 Aligned_cols=65 Identities=6% Similarity=-0.139 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHcccCCHHHHHHHHHhchhc
Q 006615 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRL--PFSTIRLIIDFYGISKKADAALKAFHDDRTL 470 (638)
Q Consensus 406 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 470 (638)
...|..+...+...|++++|...|+........+ ...++..+-..|...|+.++|...++.....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4455666666777788888888888776543222 1245666667777777777777777776544
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.92 E-value=0.06 Score=47.42 Aligned_cols=86 Identities=13% Similarity=0.069 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc--hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 006615 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNV--SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181 (638)
Q Consensus 104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 181 (638)
.+..+...+...|++++|...+++..+....++ ...+..+...+.+.|++++|...+++..... +-+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 455555556666777777777766654322211 2456666666777777777777777666543 2234455555555
Q ss_pred HHhcCChHH
Q 006615 182 YAKTGKNFE 190 (638)
Q Consensus 182 ~~~~g~~~~ 190 (638)
+...|+...
T Consensus 116 ~~~~g~~~~ 124 (172)
T PRK02603 116 YHKRGEKAE 124 (172)
T ss_pred HHHcCChHh
Confidence 655555433
No 168
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.91 E-value=0.028 Score=56.02 Aligned_cols=86 Identities=9% Similarity=-0.072 Sum_probs=44.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHH
Q 006615 113 AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV 192 (638)
Q Consensus 113 ~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 192 (638)
...|+++.|...|++.++.. +.+...|..+..+|.+.|++++|+..+++....+ +.+...|..+..+|...|++++|.
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34455555555555554432 2233344445555555555555555555555543 223445555555555555555555
Q ss_pred HHHHHHHH
Q 006615 193 ETFRQVID 200 (638)
Q Consensus 193 ~~~~~m~~ 200 (638)
..|++..+
T Consensus 91 ~~~~~al~ 98 (356)
T PLN03088 91 AALEKGAS 98 (356)
T ss_pred HHHHHHHH
Confidence 55555554
No 169
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.11 Score=47.04 Aligned_cols=97 Identities=10% Similarity=0.022 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH---
Q 006615 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS--- 180 (638)
Q Consensus 104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~--- 180 (638)
+.+.++..+...+.+.-....+.+.++...+.++.....|.+.-.+.|+.+.|...|+...+..-+.|..+.+.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44455555555566666666666666655455555555666666666666666666665554332333333333322
Q ss_pred --HHHhcCChHHHHHHHHHHHH
Q 006615 181 --VYAKTGKNFEAVETFRQVID 200 (638)
Q Consensus 181 --~~~~~g~~~~A~~~~~~m~~ 200 (638)
.|.-.+++.+|...|.+...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~ 280 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILR 280 (366)
T ss_pred hhheecccchHHHHHHHhhccc
Confidence 22333444445544544443
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.90 E-value=0.013 Score=58.23 Aligned_cols=89 Identities=11% Similarity=-0.151 Sum_probs=53.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccC
Q 006615 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCK 494 (638)
Q Consensus 415 ~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 494 (638)
.+...|+++.|.++|++....... +...|..+..+|.+.|++++|+..++.+... .|+....|..+..+|...|
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l-----~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIEL-----DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCCHHHHHHHHHHHHHhC
Confidence 344556666666666666655433 4455555556666666666666666666544 2333355666666666666
Q ss_pred ChHHHHHHHHHHHhC
Q 006615 495 RDFDAINVLEEMIFS 509 (638)
Q Consensus 495 ~~~~A~~l~~~m~~~ 509 (638)
++++|+..|++..+.
T Consensus 85 ~~~eA~~~~~~al~l 99 (356)
T PLN03088 85 EYQTAKAALEKGASL 99 (356)
T ss_pred CHHHHHHHHHHHHHh
Confidence 666666666666653
No 171
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.22 Score=45.09 Aligned_cols=156 Identities=14% Similarity=0.127 Sum_probs=115.7
Q ss_pred HHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHH
Q 006615 75 ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154 (638)
Q Consensus 75 ~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 154 (638)
+....|+.+.|..+++.+.... +-+..+-..-.-.+-..|++++|.++++.+.+.+ +.|..++-.=+-..-..|+--
T Consensus 61 AAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l 137 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNL 137 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcH
Confidence 4456789999999999998653 2222222222333556899999999999999876 566667776666666778777
Q ss_pred HHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHH---HcCCHHHHHHHH
Q 006615 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY-TVMIEHLV---NLGKLDSALEVF 230 (638)
Q Consensus 155 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty-~~li~~~~---~~g~~~~A~~~~ 230 (638)
+|++-+....+. +..|...|.-+-..|...|++++|.-.++++.- +.|....| ..+...+- ...+++.|.+.|
T Consensus 138 ~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 138 EAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred HHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 888888887776 677899999999999999999999999999998 45654444 33433332 344678889999
Q ss_pred HhcccC
Q 006615 231 SALPLM 236 (638)
Q Consensus 231 ~~m~~~ 236 (638)
.+..+.
T Consensus 215 ~~alkl 220 (289)
T KOG3060|consen 215 ERALKL 220 (289)
T ss_pred HHHHHh
Confidence 888764
No 172
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.75 Score=48.31 Aligned_cols=131 Identities=12% Similarity=0.151 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCCchHhHHHH
Q 006615 67 LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQ---RNHELKTLIGDISSSKFLNVSVNFMNL 143 (638)
Q Consensus 67 ~~~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~l~~~~~~~~~~~~~~~~~~l 143 (638)
.+-..++..+...+.+..|+++-.++....+ .- ..+|........+.. +-+.+..+-+++... . -...+|..+
T Consensus 438 l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~-~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~i 513 (829)
T KOG2280|consen 438 LSEEVVIDRLVDRHLYSVAIQVAKLLNLPES-QG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAI 513 (829)
T ss_pred hchhhhhHHHHhcchhHHHHHHHHHhCCccc-cc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHH
Confidence 3444578888889999999999999975432 22 446666666665543 223333333344332 2 334558888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCC----CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006615 144 MQWYSTSGDLELVLSTWNEYRQRAK----LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201 (638)
Q Consensus 144 l~~~~~~g~~~~A~~l~~~m~~~~~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 201 (638)
.+.--.+|+.+-|..+++.=...+. -.+..-+..-+.-..+.|+.+-...++.+|.++
T Consensus 514 A~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~ 575 (829)
T KOG2280|consen 514 ARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK 575 (829)
T ss_pred HHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 8888899999999998875332221 112344666777788889999888888888764
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.80 E-value=0.035 Score=48.68 Aligned_cols=62 Identities=10% Similarity=-0.061 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--chHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 006615 105 LHALATVLAKSQRNHELKTLIGDISSSKFLN--VSVNFMNLMQWYSTSGDLELVLSTWNEYRQR 166 (638)
Q Consensus 105 ~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 166 (638)
+..+...+...|++++|...++........+ ...++..+...|.+.|+.++|...+++....
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444444445555555555555554321111 1224445555555555555555555555443
No 174
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.76 E-value=0.55 Score=48.70 Aligned_cols=205 Identities=10% Similarity=0.037 Sum_probs=116.4
Q ss_pred CCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHH--------hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 006615 134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR-AKLLSTE--------SYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204 (638)
Q Consensus 134 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~-~~~p~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 204 (638)
.|.+..|..|...-.+.-.++.|...|-+.... |++.--. .-.+=|.+ --|.+++|.++|-+|-++.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh-
Confidence 466677777777766767777777777554332 3221000 00111122 24778888888877766532
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCC--ccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006615 205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI--KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVA 282 (638)
Q Consensus 205 p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~l 282 (638)
.|..+.+.|++-.+.++++.-.. +. +.-...|+.+...++....+++|.+.|..-.. +-..
T Consensus 766 --------Aielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~ 828 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQ 828 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhH
Confidence 35666777777777666654211 10 11134677777777777777777777765321 1123
Q ss_pred HHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHH
Q 006615 283 LERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVS 362 (638)
Q Consensus 283 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (638)
+.++.....+++-..+-+.+.++..
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe~s~------------------------------------------------------- 853 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPEDSE------------------------------------------------------- 853 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCcccc-------------------------------------------------------
Confidence 4555555555554444444432210
Q ss_pred HhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006615 363 LLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKL 432 (638)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m 432 (638)
-...+++++...|.-++|.+.|-... .| -.-+..|...+++.+|.++-+..
T Consensus 854 ---------llp~~a~mf~svGMC~qAV~a~Lr~s-----~p-----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 854 ---------LLPVMADMFTSVGMCDQAVEAYLRRS-----LP-----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred ---------hHHHHHHHHHhhchHHHHHHHHHhcc-----Cc-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 01235677777788888887775432 11 23566778888888888776654
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.75 E-value=0.061 Score=56.12 Aligned_cols=142 Identities=9% Similarity=-0.043 Sum_probs=90.0
Q ss_pred CCCCCHHHHHHHHHHHccc-----CCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccC--------ChHHHHHH
Q 006615 436 GMRLPFSTIRLIIDFYGIS-----KKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCK--------RDFDAINV 502 (638)
Q Consensus 436 g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--------~~~~A~~l 502 (638)
+.+.+...|...+.+.... +..+.|..+|++..+. +|+....|..+..++.... +...+.+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l-----dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~ 406 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS-----EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTE 406 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 4455667777777664322 2366777777777765 5555455555444332221 12333444
Q ss_pred HHHHHhC-CCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006615 503 LEEMIFS-GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKK 581 (638)
Q Consensus 503 ~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~ 581 (638)
.++.... ....+...|..+.-.....|++++|...+++.... .|+...|..+..
T Consensus 407 ~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L-------------------------~ps~~a~~~lG~ 461 (517)
T PRK10153 407 LDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL-------------------------EMSWLNYVLLGK 461 (517)
T ss_pred HHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------------------------CCCHHHHHHHHH
Confidence 4433332 12334466776655556678999999999988875 356667888888
Q ss_pred HHhccCcHHHHHHHHHHHHHccCCCC
Q 006615 582 SLWKEGRRKEAAAVEERCEKINDVPS 607 (638)
Q Consensus 582 ~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (638)
.+...|+.++|.+.+++....++..|
T Consensus 462 ~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 462 VYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 88899999999999999888776555
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.73 E-value=0.16 Score=53.11 Aligned_cols=158 Identities=10% Similarity=-0.017 Sum_probs=105.2
Q ss_pred CCCCCchHhHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC--------ChHHHHHHHHH
Q 006615 131 SKFLNVSVNFMNLMQWYSTSG-----DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG--------KNFEAVETFRQ 197 (638)
Q Consensus 131 ~~~~~~~~~~~~ll~~~~~~g-----~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~ 197 (638)
...+.+...|...+++..... +.+.|..+|++..+.+ +-....|..+..++.... +...+.+...+
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 344567788888888765432 3779999999999875 223455555544443321 22334444444
Q ss_pred HHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 006615 198 VIDE-GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276 (638)
Q Consensus 198 m~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 276 (638)
.... ....+...|..+.-.+...|++++|...+++.... .|+...|..+...+...|+.++|.+.|++....+ |.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR--PG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC
Confidence 3332 23345677887766777789999999999998875 4788899999999999999999999999987654 33
Q ss_pred HHHHHHHHHHHHcCChH
Q 006615 277 RAMRVALERMQEMGFIQ 293 (638)
Q Consensus 277 ~~~~~ll~~~~~~g~~~ 293 (638)
..++.+...+.-.-+++
T Consensus 486 ~pt~~~~~~~~f~~~~~ 502 (517)
T PRK10153 486 ENTLYWIENLVFQTSVE 502 (517)
T ss_pred CchHHHHHhccccccHH
Confidence 33444443333333333
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.68 E-value=0.012 Score=42.28 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=27.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc
Q 006615 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235 (638)
Q Consensus 184 ~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~ 235 (638)
+.|++++|.++|+++.+.... +...+..+..+|.+.|++++|.++++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445566666666665553211 444455555556666666666666665554
No 178
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.58 E-value=0.0099 Score=42.79 Aligned_cols=63 Identities=21% Similarity=0.309 Sum_probs=38.9
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006615 148 STSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213 (638)
Q Consensus 148 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~l 213 (638)
.+.|++++|.++|+++.... +-+...+..+..+|.+.|++++|.++++++... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 35567777777777776654 335666666777777777777777777776663 3554444433
No 179
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.57 E-value=0.029 Score=51.93 Aligned_cols=100 Identities=10% Similarity=0.013 Sum_probs=66.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCC
Q 006615 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR 495 (638)
Q Consensus 416 ~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 495 (638)
+.+.+++.+|+..|.+.+..... |.+-|..--.+|++.|.++.|++-.+..... +|+...+|..|..+|...|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-----Dp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSI-----DPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhc-----ChHHHHHHHHHHHHHHccCc
Confidence 34566777777777777665433 5555666666777777777777666665543 55555777777777888888
Q ss_pred hHHHHHHHHHHHhCCCCcchhhHHHHHH
Q 006615 496 DFDAINVLEEMIFSGIVPDVQTFSGLMY 523 (638)
Q Consensus 496 ~~~A~~l~~~m~~~g~~p~~~t~~~li~ 523 (638)
+++|.+.|++.++ +.|+..+|-.=+.
T Consensus 165 ~~~A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 165 YEEAIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHHHhhhc--cCCCcHHHHHHHH
Confidence 8888777777766 4676666654443
No 180
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.53 E-value=1.3 Score=46.16 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=36.5
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHh
Q 006615 241 TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREM 302 (638)
Q Consensus 241 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~ 302 (638)
|....-.|.+++...|.-++|.+.|-+-.. | -..+..|...++|.+|.++-+..
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRRSL----P----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhccC----c----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 455566677888888888888877754321 1 13466777888888888876654
No 181
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.52 E-value=0.89 Score=44.23 Aligned_cols=105 Identities=10% Similarity=0.065 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHH
Q 006615 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183 (638)
Q Consensus 104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 183 (638)
.|..+.......|+.+.|..+++. .|+.. .=+..+.+.|+.+.| +.+..+.| .|| -+|..|+..--
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~------Ep~~~---~qVplLL~m~e~e~A---L~kAi~Sg-D~D-Li~~vLl~L~~ 67 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLEL------EPRAS---KQVPLLLKMGEDELA---LNKAIESG-DTD-LIYLVLLHLKR 67 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHc------CCChH---HHHHHHhcCCchHHH---HHHHHHcC-Ccc-HHHHHHHHHHH
Confidence 466777778888999999888753 33332 235556667776666 34444444 222 24555554332
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 006615 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232 (638)
Q Consensus 184 ~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~ 232 (638)
+.. .. +++.-+.. .|.. ..+...|++..+.+.-..+|.+
T Consensus 68 ~l~-~s---~f~~il~~---~p~a---~~l~~~~~r~~~~~~L~~~y~q 106 (319)
T PF04840_consen 68 KLS-LS---QFFKILNQ---NPVA---SNLYKKYCREQDRELLKDFYYQ 106 (319)
T ss_pred hCC-HH---HHHHHHHh---Ccch---HHHHHHHHHhccHHHHHHHHHh
Confidence 221 11 23332222 2332 3345567776777776666654
No 182
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.44 E-value=0.052 Score=46.27 Aligned_cols=71 Identities=20% Similarity=0.245 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHhh
Q 006615 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ-----NGVEPDAYM 552 (638)
Q Consensus 481 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~-----~~~~p~~~~ 552 (638)
.+...++..+...|++++|.++.+.+.... +-|...|..+|.+|...|+..+|.+.|+.+.+ .|+.|+..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 456777888889999999999999998853 34788999999999999999999999987764 366666544
No 183
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.40 E-value=0.015 Score=41.38 Aligned_cols=56 Identities=11% Similarity=0.258 Sum_probs=32.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006615 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200 (638)
Q Consensus 144 l~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 200 (638)
...+.+.|++++|...|++..+.. +-+...+..+..++.+.|++++|...|++..+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556666666666666666554 33455555555666666666666666666654
No 184
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.38 E-value=0.077 Score=44.70 Aligned_cols=90 Identities=12% Similarity=-0.135 Sum_probs=63.1
Q ss_pred HHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHcc
Q 006615 449 DFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ 528 (638)
Q Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 528 (638)
.-+...|++++|.++|+.+... .|....-|-.|..++-..|++++|+..|........ -|...+-.+-.++...
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~-----Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIY-----DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 3445677777777777776543 444456677777777778888888888887777542 3566677777777888
Q ss_pred CCHHHHHHHHHHHHhC
Q 006615 529 GDEKIVQKLFSMVRQN 544 (638)
Q Consensus 529 g~~~~a~~l~~~m~~~ 544 (638)
|+.+.|.+-|+..+..
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8888888888776654
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.36 E-value=0.16 Score=41.17 Aligned_cols=93 Identities=15% Similarity=-0.006 Sum_probs=52.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHH
Q 006615 413 LTILARHGHVELVDRLIAKLRSDGMRLPF--STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTL 490 (638)
Q Consensus 413 i~~~~~~g~~~~a~~l~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 490 (638)
..++-..|+.++|..+|++....|...+. ..+-.+-..+...|++++|..++++.....+...... .....+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~--~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNA--ALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccH--HHHHHHHHHH
Confidence 34556677777777777777777765432 2333444566667777777777776654422211111 1112222355
Q ss_pred HccCChHHHHHHHHHHH
Q 006615 491 TKCKRDFDAINVLEEMI 507 (638)
Q Consensus 491 ~~~g~~~~A~~l~~~m~ 507 (638)
...|+.++|++.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66677777777665544
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.36 E-value=0.3 Score=39.57 Aligned_cols=88 Identities=13% Similarity=0.063 Sum_probs=43.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCc--hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHhHHHHHHHHH
Q 006615 110 TVLAKSQRNHELKTLIGDISSSKFLNV--SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS----TESYNIVMSVYA 183 (638)
Q Consensus 110 ~~~~~~~~~~~a~~l~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~----~~~~~~li~~~~ 183 (638)
.++-..|+.++|..+|++....|.... ...+-.+...+...|++++|..+|++..... |+ ......+..++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 334455566666666666555554332 1223344455556666666666666555432 21 111122223445
Q ss_pred hcCChHHHHHHHHHHH
Q 006615 184 KTGKNFEAVETFRQVI 199 (638)
Q Consensus 184 ~~g~~~~A~~~~~~m~ 199 (638)
..|+.++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5566666666555444
No 187
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.36 E-value=0.016 Score=41.17 Aligned_cols=61 Identities=28% Similarity=0.336 Sum_probs=50.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 006615 521 LMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCE 600 (638)
Q Consensus 521 li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 600 (638)
+...+...|++++|.+.|+.+.+.. |+ +...+..+..++.+.|++++|.+.++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~--P~----------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD--PD----------------------NPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS--TT----------------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CC----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3467888999999999999999863 33 46677889999999999999999999999
Q ss_pred HccCC
Q 006615 601 KINDV 605 (638)
Q Consensus 601 ~~~~~ 605 (638)
+..+.
T Consensus 59 ~~~P~ 63 (65)
T PF13432_consen 59 ELDPD 63 (65)
T ss_dssp HHSTT
T ss_pred HHCcC
Confidence 87653
No 188
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.33 E-value=0.063 Score=49.05 Aligned_cols=83 Identities=11% Similarity=0.226 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC----------------ChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006615 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG----------------KNFEAVETFRQVIDEGAIPNSRTYTVMIE 215 (638)
Q Consensus 152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g----------------~~~~A~~~~~~m~~~g~~p~~~ty~~li~ 215 (638)
.++-....+..|.+.|+..|..+|+.||+.+-+.. +-+-++.++++|...|+.||..+-..|++
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn 166 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN 166 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 34444444455555555555555555555443321 11335566666666666666666666666
Q ss_pred HHHHcCC-HHHHHHHHHhcc
Q 006615 216 HLVNLGK-LDSALEVFSALP 234 (638)
Q Consensus 216 ~~~~~g~-~~~A~~~~~~m~ 234 (638)
++.+.|- ..+..++.-.|.
T Consensus 167 ~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 167 AFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HhccccccHHHHHHHHHhhh
Confidence 6665553 333444444444
No 189
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.26 E-value=0.3 Score=50.08 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchh
Q 006615 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRT 469 (638)
Q Consensus 406 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 469 (638)
..+...+...+-+...+..|-++|..|-+. .++++.....+++++|+.+-+...+
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 334444455555666677777777776532 2567778888888888888877443
No 190
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.21 E-value=0.034 Score=47.39 Aligned_cols=70 Identities=21% Similarity=0.284 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHH
Q 006615 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID-----EGAIPNSRTY 210 (638)
Q Consensus 140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~ty 210 (638)
...++..+...|+++.|..+.+.+...+ +.|...|..+|.+|...|+..+|.+.|+++.+ .|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4566777778888888888888888775 55677888888888888888888888877754 3777776654
No 191
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.20 E-value=0.65 Score=44.59 Aligned_cols=139 Identities=11% Similarity=0.141 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHh--cC----ChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCC-
Q 006615 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAK--TG----KNFEAVETFRQVIDEGA---IPNSRTYTVMIEHLVNLGK- 222 (638)
Q Consensus 153 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~g~---~p~~~ty~~li~~~~~~g~- 222 (638)
+++...+++.|.+.|++-+..+|-+-.-.... .. ...+|.++|+.|++... .++..++..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667788999999988877776553333222 22 34678999999998642 3567788888765 3333
Q ss_pred ---HHHHHHHHHhcccCCCccCHh-HHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChH
Q 006615 223 ---LDSALEVFSALPLMRIKRTSK-QYLILVEGFVGVER---FDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293 (638)
Q Consensus 223 ---~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~ 293 (638)
.++++++|+.+.+.|+..+.. -+-+-+-+++.... +..+.++++.+.+.|+++....|..+..++-.+..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~ 233 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPE 233 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCch
Confidence 567888999999888876433 33333444443222 457889999999999999988887666665544443
No 192
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.18 E-value=0.9 Score=42.43 Aligned_cols=56 Identities=18% Similarity=0.076 Sum_probs=24.1
Q ss_pred HHHcCCChhHHHHHHHHHHcCCCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006615 75 ALRSAPNADSALSIMEALKSNPNFSHN-QSTLHALATVLAKSQRNHELKTLIGDISS 130 (638)
Q Consensus 75 ~l~~~~~~~~Al~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~l~~~~~~ 130 (638)
.+...|++++|++.|+.+....+..|- ....-.+..++.+.++++.|...+++..+
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~ 97 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR 97 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 334445555555555555533211110 00112233444455555555555555544
No 193
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.17 E-value=0.053 Score=44.34 Aligned_cols=68 Identities=16% Similarity=0.128 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchh
Q 006615 405 DVYALEKMLTILARHGHVELVDRLIAKLRSD---------------GMRLPFSTIRLIIDFYGISKKADAALKAFHDDRT 469 (638)
Q Consensus 405 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 469 (638)
|..++..+|.++++.|+++....+++..=.- ...|+..+..+++.+|+..|++..|.++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4567888999999999999888888654211 1224444444444444444444444444444444
Q ss_pred ccC
Q 006615 470 LCG 472 (638)
Q Consensus 470 ~~~ 472 (638)
..+
T Consensus 81 ~Y~ 83 (126)
T PF12921_consen 81 KYP 83 (126)
T ss_pred HcC
Confidence 443
No 194
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.07 E-value=0.026 Score=41.96 Aligned_cols=65 Identities=20% Similarity=0.210 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHccCChHHHHHHHHHHHhC----CC-Ccc-hhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 006615 478 KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS----GI-VPD-VQTFSGLMYHFALQGDEKIVQKLFSMVR 542 (638)
Q Consensus 478 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~ 542 (638)
+...+|+.+...|...|++++|+..|++..+. |- .|+ ..+++.+-..|...|++++|++.+++..
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33456666666777777777777776665432 11 122 4456666667777777777777776554
No 195
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.01 E-value=0.1 Score=42.71 Aligned_cols=46 Identities=9% Similarity=0.117 Sum_probs=20.8
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHH
Q 006615 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDE-GAIPNSRTYTVMIE 215 (638)
Q Consensus 170 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~ty~~li~ 215 (638)
|+..+..+++.+|+.+|++..|+++.+...+. +++.+..+|..|+.
T Consensus 50 Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 50 PTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44444444444444444444444444444432 33334444444444
No 196
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.95 E-value=1.9 Score=42.58 Aligned_cols=121 Identities=14% Similarity=0.184 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCC-CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHH-HHH
Q 006615 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSG-IVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV-LIQ 558 (638)
Q Consensus 481 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~-li~ 558 (638)
..|...|+.-.+..-++.|..+|-+..+.| +.+++..++++|.-++. |+..-|.++|+-=..+ -||...|-. .+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456677777777777777777787777777 56777777777776653 6667777777643332 234333211 111
Q ss_pred HHHHH--------hhhC---CCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615 559 AYCKY--------LSNS---NLMPD--AATKELLKKSLWKEGRRKEAAAVEERCEKIND 604 (638)
Q Consensus 559 ~~~~~--------m~~~---g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 604 (638)
.+.+. +-+. .+.-+ ...|..+|+-=..-|+...|..+-++|.+.-+
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 11111 1111 12222 34566666666666666666666666665443
No 197
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.93 E-value=1.8 Score=42.11 Aligned_cols=52 Identities=12% Similarity=0.181 Sum_probs=33.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHcCChHHHHHHH
Q 006615 244 QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFL 299 (638)
Q Consensus 244 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~-~~ll~~~~~~g~~~~a~~~~ 299 (638)
+.+.-|.-+...|+...|.++-.+. . .|+..+ +..+.++++.++|++-..+-
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa 231 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFA 231 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3445566667777777777765554 2 355544 47788888888887766653
No 198
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.90 E-value=2 Score=44.46 Aligned_cols=251 Identities=19% Similarity=0.220 Sum_probs=126.9
Q ss_pred HHHHHHHHHhcCCHHHHHHH---------HHHHHhcCCCCCHHhHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCCHH
Q 006615 140 FMNLMQWYSTSGDLELVLST---------WNEYRQRAKLLSTESYNIVMSVYAKTGKN--FEAVETFRQVIDEGAIPNSR 208 (638)
Q Consensus 140 ~~~ll~~~~~~g~~~~A~~l---------~~~m~~~~~~p~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~ 208 (638)
+.+-+--|...|.+++|.++ |+.+.... .+.-.+++-=++|.+.++. -+...-+++|++.|-.|+..
T Consensus 559 ~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~A--LeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i 636 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEA--LEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDL 636 (1081)
T ss_pred ccccchhhhhccchhhhhcccccceecchHHHHHHHH--HhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH
Confidence 44445556777777777543 23332221 2244466666777766554 34445567788888888875
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHH-----HHHHHHccCCHHHHHHHHHHHHh---CCCCCCHHHH
Q 006615 209 TYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI-----LVEGFVGVERFDEAKSLLNEMRD---DGKFPGRAMR 280 (638)
Q Consensus 209 ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-----li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~~~ 280 (638)
... ..|+-.|++.+|-++|.+--... .-...|+. +..-|...|..++-..+.++-.+ .--.|..
T Consensus 637 LlA---~~~Ay~gKF~EAAklFk~~G~en--RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePka--- 708 (1081)
T KOG1538|consen 637 LLA---DVFAYQGKFHEAAKLFKRSGHEN--RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKA--- 708 (1081)
T ss_pred HHH---HHHHhhhhHHHHHHHHHHcCchh--hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHH---
Confidence 443 44566788888888886533210 11112221 23344445555544444433211 1111211
Q ss_pred HHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHH
Q 006615 281 VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEV 360 (638)
Q Consensus 281 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (638)
....+..+|+.++|..+.-+- .|.+ .+.+.-+.....
T Consensus 709 -AAEmLiSaGe~~KAi~i~~d~---------------------------------------gW~d--~lidI~rkld~~- 745 (1081)
T KOG1538|consen 709 -AAEMLISAGEHVKAIEICGDH---------------------------------------GWVD--MLIDIARKLDKA- 745 (1081)
T ss_pred -HHHHhhcccchhhhhhhhhcc---------------------------------------cHHH--HHHHHHhhcchh-
Confidence 223344566666666553211 0000 000000000000
Q ss_pred HHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 006615 361 VSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP 440 (638)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~ 440 (638)
........+..+.....+.-|-++|..+.. ..++++.....+++++|..+-+...+. .||
T Consensus 746 --------ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~--~~d 805 (1081)
T KOG1538|consen 746 --------EREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEF--KDD 805 (1081)
T ss_pred --------hhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccc--ccc
Confidence 000112345566777888889999998742 235777888999999999887765432 233
Q ss_pred HHHHHHHHHHHcccCCHHHHHHHHH
Q 006615 441 FSTIRLIIDFYGISKKADAALKAFH 465 (638)
Q Consensus 441 ~~~~~~li~~~~~~g~~~~A~~~~~ 465 (638)
+ |-.-.+-++...++++|.+.|.
T Consensus 806 V--y~pyaqwLAE~DrFeEAqkAfh 828 (1081)
T KOG1538|consen 806 V--YMPYAQWLAENDRFEEAQKAFH 828 (1081)
T ss_pred c--cchHHHHhhhhhhHHHHHHHHH
Confidence 2 2233334444555555544443
No 199
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.87 E-value=0.046 Score=39.38 Aligned_cols=62 Identities=26% Similarity=0.334 Sum_probs=31.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 006615 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG-KNFEAVETFRQVID 200 (638)
Q Consensus 138 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 200 (638)
.+|..+...+.+.|++++|+..|++..+.+ +.+...|..+..++.+.| ++++|++.|++..+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344455555555555555555555555543 223444555555555555 45555555555443
No 200
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.84 E-value=0.045 Score=40.59 Aligned_cols=66 Identities=9% Similarity=-0.020 Sum_probs=40.8
Q ss_pred HHHHHHHHHcccCCHHHHHHHHHhchhcc--CCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 006615 443 TIRLIIDFYGISKKADAALKAFHDDRTLC--GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF 508 (638)
Q Consensus 443 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 508 (638)
+++.+...|...|++++|+..|++..+.. .+...|..+.+++.+...|...|++++|++.+++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445555555555555555555543321 0112344567888899999999999999999887653
No 201
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.82 E-value=0.11 Score=52.86 Aligned_cols=162 Identities=14% Similarity=0.126 Sum_probs=110.4
Q ss_pred HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG 151 (638)
Q Consensus 72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g 151 (638)
......-.++++++++..+.-.-.+.++ ....+.+++.+.+.|..+.|..+..+-. .-.....+.|
T Consensus 267 ~fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg 332 (443)
T PF04053_consen 267 EFKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLG 332 (443)
T ss_dssp HHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT
T ss_pred HHHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcC
Confidence 4556667788999888876333222222 3468889999999999999988854322 2346677899
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006615 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231 (638)
Q Consensus 152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~ 231 (638)
+++.|.++.++.. +...|..|.+...+.|+++-|.+.|.+... |..|+-.|.-.|+.+.-.++-+
T Consensus 333 ~L~~A~~~a~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 333 NLDIALEIAKELD------DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp -HHHHHHHCCCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred CHHHHHHHHHhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHH
Confidence 9999988765443 577899999999999999999999988764 6777778888899888888877
Q ss_pred hcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 006615 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268 (638)
Q Consensus 232 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 268 (638)
.....|- +|....++.-.|++++..+++.+.
T Consensus 398 ~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 398 IAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 7665542 666667777778888888887653
No 202
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.81 E-value=0.044 Score=39.48 Aligned_cols=60 Identities=15% Similarity=0.093 Sum_probs=27.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccC-CHHHHHHHHHHHH
Q 006615 482 LYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG-DEKIVQKLFSMVR 542 (638)
Q Consensus 482 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~a~~l~~~m~ 542 (638)
.|..+...+.+.|++++|+..|++..+.. +-+...|..+-.+|...| ++++|.+.++...
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 44444444445555555555555444442 113334444444444444 3455555544443
No 203
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.74 Score=43.13 Aligned_cols=115 Identities=19% Similarity=0.149 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcc-hhhH
Q 006615 440 PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD-VQTF 518 (638)
Q Consensus 440 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~ 518 (638)
|...|-.|-..|...|+.+.|...|....+..+. +|+....|...+..-.......++.++|+++... .|+ +.+.
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~--n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral 230 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD--NPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRAL 230 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHH
Confidence 7788999999999999999999999998876443 3333233333332222334567899999999886 454 5555
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 006615 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560 (638)
Q Consensus 519 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~ 560 (638)
..|-..+...|++.+|...|+.|.+. -|.......+|..-
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie~~ 270 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIERS 270 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHHHH
Confidence 56667899999999999999999985 34444555555443
No 204
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.78 E-value=1.1 Score=38.59 Aligned_cols=96 Identities=20% Similarity=0.147 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCHHhHHHHHHHHH
Q 006615 105 LHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKL-LSTESYNIVMSVYA 183 (638)
Q Consensus 105 ~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~-p~~~~~~~li~~~~ 183 (638)
--.+..++.+.|+..+|...|++....-+..|....-.+.++....+++..|...++.+.+.+-. .+..+.-.+...+.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la 171 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA 171 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence 33444444555555555555555444444444444444444444445555555555544433200 01112223334444
Q ss_pred hcCChHHHHHHHHHHHH
Q 006615 184 KTGKNFEAVETFRQVID 200 (638)
Q Consensus 184 ~~g~~~~A~~~~~~m~~ 200 (638)
..|+.+.|..-|+....
T Consensus 172 a~g~~a~Aesafe~a~~ 188 (251)
T COG4700 172 AQGKYADAESAFEVAIS 188 (251)
T ss_pred hcCCchhHHHHHHHHHH
Confidence 44555555555544444
No 205
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.74 E-value=1 Score=37.92 Aligned_cols=26 Identities=8% Similarity=0.010 Sum_probs=11.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHc
Q 006615 69 PFIVTHALRSAPNADSALSIMEALKS 94 (638)
Q Consensus 69 ~~~~~~~l~~~~~~~~Al~~~~~~~~ 94 (638)
+.-++..+...+.+..+..+++++..
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~ 35 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALK 35 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHc
Confidence 33344444444444444444444443
No 206
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.63 E-value=0.17 Score=47.01 Aligned_cols=96 Identities=18% Similarity=0.225 Sum_probs=55.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHH
Q 006615 113 AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV 192 (638)
Q Consensus 113 ~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 192 (638)
.+.+++.+|...|...++.. +-|.+-|..-..+|++.|.++.|.+-.+.....+ +--..+|..|-.+|...|++++|.
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHH
Confidence 34566666666666666532 2334445555666666666666666666555543 222445666666666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHH
Q 006615 193 ETFRQVIDEGAIPNSRTYTV 212 (638)
Q Consensus 193 ~~~~~m~~~g~~p~~~ty~~ 212 (638)
+.|+...+ +.|+..+|-.
T Consensus 170 ~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 170 EAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHhhhc--cCCCcHHHHH
Confidence 66666555 5566555543
No 207
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.63 E-value=2.7 Score=41.77 Aligned_cols=188 Identities=15% Similarity=0.131 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHccc----CCHHHHHHHHHhchhccCCC
Q 006615 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR-------LIIDFYGIS----KKADAALKAFHDDRTLCGPI 474 (638)
Q Consensus 406 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~-------~li~~~~~~----g~~~~A~~~~~~~~~~~~~~ 474 (638)
..+|..++....+.++...|...+.-+..-... ...-. .+.+..+.- -+...=+.+|....... .
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~--~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--i 373 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR--ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--I 373 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc--chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--c
Confidence 456788888899999999998888877644322 21111 122222211 11222233444332210 1
Q ss_pred cchhHHHHHHHHHHHHHccCC-hHHHHHHHHHHHhCCCCcchhhHHHHH----HHHHcc---CCHHHHHHHHHHHHhCCC
Q 006615 475 SKFKLMLLYSSLLRTLTKCKR-DFDAINVLEEMIFSGIVPDVQTFSGLM----YHFALQ---GDEKIVQKLFSMVRQNGV 546 (638)
Q Consensus 475 ~~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~li----~~~~~~---g~~~~a~~l~~~m~~~~~ 546 (638)
...-.+...---..-+.+.|. -++|+.+++...+-. .-|..+-|.+. .+|... ..+.+-..+-+-+.+.|+
T Consensus 374 DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl 452 (549)
T PF07079_consen 374 DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGL 452 (549)
T ss_pred cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 111111111112233555565 788999999988742 12444333332 344332 334555566667778899
Q ss_pred CCCHhhHHHHHHHHHHH----------------hhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 006615 547 EPDAYMFKVLIQAYCKY----------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598 (638)
Q Consensus 547 ~p~~~~~~~li~~~~~~----------------m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 598 (638)
.|-.+.-.-+-+.+..+ +--..+.|+..+|..+.-++....+++||..++..
T Consensus 453 ~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 453 TPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred CcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 88765555544544444 33346889999999999999999999999999988
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.62 E-value=0.085 Score=38.45 Aligned_cols=56 Identities=18% Similarity=0.141 Sum_probs=34.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006615 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201 (638)
Q Consensus 145 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 201 (638)
..|.+.++++.|.++++++...+ +.+...|.....++.+.|++++|.+.|++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 44566666666666666666653 334555555666666666666666666666653
No 209
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.60 E-value=2 Score=40.14 Aligned_cols=178 Identities=12% Similarity=0.088 Sum_probs=103.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 006615 105 LHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNF---MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181 (638)
Q Consensus 105 ~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~---~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 181 (638)
+-.....+...|+++.|...|+.+....... ...- -.+..+|.+.+++++|...|++..+..-.-...-|-..+.+
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 3334445567899999999999988743222 2222 24567788899999999999998876422223344445555
Q ss_pred HHh--c---------------CCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccC
Q 006615 182 YAK--T---------------GKN---FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241 (638)
Q Consensus 182 ~~~--~---------------g~~---~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 241 (638)
.+. . ++. .+|++.|+++++ -|-...-..+|.+.+..+.. ..-
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~---~la 175 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKD---RLA 175 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHH---HHH
Confidence 442 1 111 234444444444 33333334555544444332 001
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHcCChHHHHHHHHHh
Q 006615 242 SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP---GRAMRVALERMQEMGFIQGANEFLREM 302 (638)
Q Consensus 242 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~~~~ll~~~~~~g~~~~a~~~~~~~ 302 (638)
.. --.+...|.+.|.+..|..-++.+.+.=... ....+.+..+|.+.|..++|..+...+
T Consensus 176 ~~-e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 176 KY-ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HH-HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11 1134566888888888888888887642211 113346778888899988888877655
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.58 E-value=1.5 Score=39.70 Aligned_cols=55 Identities=15% Similarity=0.022 Sum_probs=23.4
Q ss_pred HHcCCChhHHHHHHHHHHcCCCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006615 76 LRSAPNADSALSIMEALKSNPNFS-HNQSTLHALATVLAKSQRNHELKTLIGDISS 130 (638)
Q Consensus 76 l~~~~~~~~Al~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~ 130 (638)
+...|++.+|+..|+.+....+.. .-....-.++.++.+.|+++.|...++++.+
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555555321111 1122333444444555555555555555443
No 211
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.58 E-value=2.6 Score=41.59 Aligned_cols=167 Identities=13% Similarity=0.046 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCchHhHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCHHhHHH
Q 006615 104 TLHALATVLAKSQRNHELKTLIGDISSSK---FLNVSVNFMNLMQWYST---SGDLELVLSTWNEYRQRAKLLSTESYNI 177 (638)
Q Consensus 104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~---~~~~~~~~~~ll~~~~~---~g~~~~A~~l~~~m~~~~~~p~~~~~~~ 177 (638)
+...++-+|....+++...++.+.+.... +.....+--...-++-+ .|+.++|++++..+......++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 44556666888889999999999888742 11122222234455556 7899999999998666666788888888
Q ss_pred HHHHHHh---------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----HHHHHHHH---H-hcccCCC--
Q 006615 178 VMSVYAK---------TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK----LDSALEVF---S-ALPLMRI-- 238 (638)
Q Consensus 178 li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~----~~~A~~~~---~-~m~~~g~-- 238 (638)
+...|-. ....++|.+.|.+--+ +.||.++=-.+...+.-.|. -.+..++- . ...+.|.
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 8776533 1235677777776544 23443332222222222332 11222222 1 1112222
Q ss_pred -ccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615 239 -KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272 (638)
Q Consensus 239 -~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 272 (638)
..|-..+.++..++.-.|+.++|.+..++|.+..
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2355667888888888999999999999988764
No 212
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.48 E-value=0.26 Score=46.39 Aligned_cols=100 Identities=8% Similarity=-0.100 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHH
Q 006615 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLP--FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSS 485 (638)
Q Consensus 408 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (638)
.|...+..+.+.|++++|...|+.+...-.... ...+--+..+|...|++++|...|+.+...++..++- ..++-.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~--~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA--ADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch--hHHHHH
Confidence 355555444566888888888888876543311 2455566677777777777777777776654432222 234445
Q ss_pred HHHHHHccCChHHHHHHHHHHHhC
Q 006615 486 LLRTLTKCKRDFDAINVLEEMIFS 509 (638)
Q Consensus 486 li~~~~~~g~~~~A~~l~~~m~~~ 509 (638)
+...+...|+.++|.++|++..+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 555666677777777777777664
No 213
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.48 E-value=0.22 Score=46.92 Aligned_cols=22 Identities=9% Similarity=-0.043 Sum_probs=10.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHh
Q 006615 249 VEGFVGVERFDEAKSLLNEMRD 270 (638)
Q Consensus 249 i~~~~~~g~~~~A~~l~~~m~~ 270 (638)
...+...|+.++|..+|+++.+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444555555555554444
No 214
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.40 E-value=0.31 Score=46.73 Aligned_cols=130 Identities=12% Similarity=0.103 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HcccC----CHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCC
Q 006615 422 VELVDRLIAKLRSDGMRLPFSTIRLIIDF--YGISK----KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR 495 (638)
Q Consensus 422 ~~~a~~l~~~m~~~g~~~~~~~~~~li~~--~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 495 (638)
++....+++.|.+.|+.-+..+|-+..-. ..... ...+|..+|+.|++.++....+++ ..+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D-~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPED-YPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccc-hhHHHHHhc--cccc
Confidence 45667888999999998887776653322 22222 367899999999999998888887 677777655 3333
Q ss_pred h----HHHHHHHHHHHhCCCCcch-hhHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCCHhhHH
Q 006615 496 D----FDAINVLEEMIFSGIVPDV-QTFSGLMYHFALQGD---EKIVQKLFSMVRQNGVEPDAYMFK 554 (638)
Q Consensus 496 ~----~~A~~l~~~m~~~g~~p~~-~t~~~li~~~~~~g~---~~~a~~l~~~m~~~~~~p~~~~~~ 554 (638)
. +.++++|+.+.+.|+..+. .-+.+-+-+++.... ..++.++++.+.+.|+++....|.
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp 221 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYP 221 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccccc
Confidence 3 5678889999998887643 334444444443322 357888999999999887765554
No 215
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.31 E-value=0.24 Score=47.94 Aligned_cols=142 Identities=11% Similarity=-0.059 Sum_probs=83.8
Q ss_pred HHHHHHHHHHcccCCHHHHHHHHHhchhccC-CCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHh----CCC-Ccch
Q 006615 442 STIRLIIDFYGISKKADAALKAFHDDRTLCG-PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF----SGI-VPDV 515 (638)
Q Consensus 442 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~-~p~~ 515 (638)
..|..|-+.|.-.|+++.|+...+.-..... ...+.....++..+..++.-.|+++.|.+.|+.-.. .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 4566666677778889988877655322110 011111235788888899999999999988876432 221 1234
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 006615 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAV 595 (638)
Q Consensus 516 ~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 595 (638)
.+.-+|-.+|--..++++|+.++.+-..---..+ ...-....|.+|..++...|..++|...
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~------------------DriGe~RacwSLgna~~alg~h~kAl~f 337 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE------------------DRIGELRACWSLGNAFNALGEHRKALYF 337 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HhhhhHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4455667777777777888877754332100000 0011344566677777777777777766
Q ss_pred HHHHHH
Q 006615 596 EERCEK 601 (638)
Q Consensus 596 ~~~~~~ 601 (638)
.+.-.+
T Consensus 338 ae~hl~ 343 (639)
T KOG1130|consen 338 AELHLR 343 (639)
T ss_pred HHHHHH
Confidence 655444
No 216
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.14 E-value=0.066 Score=51.59 Aligned_cols=136 Identities=11% Similarity=-0.019 Sum_probs=84.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH----HHcCCCC-CHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcc-hhHHHH
Q 006615 409 LEKMLTILARHGHVELVDRLIAKL----RSDGMRL-PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISK-FKLMLL 482 (638)
Q Consensus 409 ~~~li~~~~~~g~~~~a~~l~~~m----~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~ 482 (638)
|..|-..|.-.|+++.|....+.- ++.|-+. ....+..+.+++.-.|+++.|.+.|+........... .-.+.+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 334444445567778777665532 2333222 2245667778888888888888888764321110111 111345
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHh----C-CCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615 483 YSSLLRTLTKCKRDFDAINVLEEMIF----S-GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544 (638)
Q Consensus 483 ~~~li~~~~~~g~~~~A~~l~~~m~~----~-g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 544 (638)
+-+|...|.-...+++|+..+.+-.. . ...-....+-+|-.+|...|..++|+.+.+.-.+.
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 66777888888888888888765432 1 11224567888889999999999998887765544
No 217
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.94 E-value=0.63 Score=46.50 Aligned_cols=66 Identities=12% Similarity=0.131 Sum_probs=53.5
Q ss_pred CCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006615 134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST----ESYNIVMSVYAKTGKNFEAVETFRQVIDE 201 (638)
Q Consensus 134 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 201 (638)
+.+...++.+..+|.+.|++++|+..|++..+.+ |+. .+|..+..+|.+.|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556678888888999999999999998887764 543 35888888899999999999999888874
No 218
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.84 E-value=2.4 Score=36.70 Aligned_cols=131 Identities=15% Similarity=-0.015 Sum_probs=88.3
Q ss_pred cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHH
Q 006615 403 THDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLL 482 (638)
Q Consensus 403 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 482 (638)
.|++..--.+..++.+.|+..+|...|++...--..-|....-.+-++....++...|...++.+-+-.+....|+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--- 162 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--- 162 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc---
Confidence 56666666778888888888888888888776555556777777777888888888888888887766555555553
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHH
Q 006615 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF 538 (638)
Q Consensus 483 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~ 538 (638)
.-.+...|...|+..+|+.-|+..... -|+...-...-..+.+.|+.+++..-+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 233445677788888888888888775 444433322333445666655554433
No 219
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.83 E-value=3.2 Score=38.08 Aligned_cols=136 Identities=10% Similarity=0.037 Sum_probs=104.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH---
Q 006615 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE--- 215 (638)
Q Consensus 139 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~--- 215 (638)
+-+++++.+.-.|.+.-...++.+..+++-+.+...-..|.+.-.+.|+.+.|...|++..+..-+.|..+++.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 45677777777788888899999999987677788888898999999999999999998887655566666666553
Q ss_pred --HHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 006615 216 --HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275 (638)
Q Consensus 216 --~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 275 (638)
.|.-.+++..|...|.++.... ..|...-|.-.-+..-.|+..+|++.++.|......|
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 3556778999999998888654 2355555554444555689999999999998765444
No 220
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.80 E-value=0.12 Score=37.55 Aligned_cols=61 Identities=20% Similarity=0.161 Sum_probs=51.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 006615 522 MYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEK 601 (638)
Q Consensus 522 i~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 601 (638)
-..|.+.+++++|.+.++.+...+ |+ +...|.....++.+.|++++|.+.+++..+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~--p~----------------------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD--PD----------------------DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC--cc----------------------cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 356788999999999999999853 33 456777889999999999999999999998
Q ss_pred ccCCC
Q 006615 602 INDVP 606 (638)
Q Consensus 602 ~~~~~ 606 (638)
.++..
T Consensus 58 ~~p~~ 62 (73)
T PF13371_consen 58 LSPDD 62 (73)
T ss_pred HCCCc
Confidence 77633
No 221
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.75 E-value=1.2 Score=37.39 Aligned_cols=85 Identities=13% Similarity=0.115 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhc
Q 006615 106 HALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185 (638)
Q Consensus 106 ~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 185 (638)
..++..+...+....+...++.+...+ ..+...++.++..|++... +...+.++. . .+.......++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence 345555555555555555555555544 2444455556665555422 222233221 0 1122333355555555
Q ss_pred CChHHHHHHHHHH
Q 006615 186 GKNFEAVETFRQV 198 (638)
Q Consensus 186 g~~~~A~~~~~~m 198 (638)
+.++++.-++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555544
No 222
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.60 E-value=0.17 Score=50.39 Aligned_cols=98 Identities=13% Similarity=-0.004 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHH---HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchh
Q 006615 440 PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM---LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516 (638)
Q Consensus 440 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 516 (638)
+...++.+..+|.+.|++++|...|++..+. .|+.. .+|..+..+|.+.|+.++|++.+++..+.+ .|
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~--- 144 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL--- 144 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---
Confidence 4577888888999999999999999988776 44443 358888899999999999999999988752 11
Q ss_pred hHHHHHH--HHHccCCHHHHHHHHHHHHhCCC
Q 006615 517 TFSGLMY--HFALQGDEKIVQKLFSMVRQNGV 546 (638)
Q Consensus 517 t~~~li~--~~~~~g~~~~a~~l~~~m~~~~~ 546 (638)
.|..+.. .+....+.++..++++.+.+-|.
T Consensus 145 ~f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 145 KFSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred hHHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 2222211 12223344577778888887764
No 223
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.50 E-value=0.36 Score=44.38 Aligned_cols=83 Identities=18% Similarity=0.254 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHc-----cCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCC----------------HHHHHHHHH
Q 006615 481 LLYSSLLRTLTK-----CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD----------------EKIVQKLFS 539 (638)
Q Consensus 481 ~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~----------------~~~a~~l~~ 539 (638)
.+|-..+..+.. .+.++-....++.|.+.|+.-|..+|+.||..+-+..- -+-+..+++
T Consensus 68 ~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLe 147 (406)
T KOG3941|consen 68 DSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLE 147 (406)
T ss_pred HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHH
Confidence 577778877765 36677788889999999999999999999999866432 134678889
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHH
Q 006615 540 MVRQNGVEPDAYMFKVLIQAYCKY 563 (638)
Q Consensus 540 ~m~~~~~~p~~~~~~~li~~~~~~ 563 (638)
+|..+|+.||..+-..|++++++.
T Consensus 148 qME~hGVmPdkE~e~~lvn~FGr~ 171 (406)
T KOG3941|consen 148 QMEWHGVMPDKEIEDILVNAFGRW 171 (406)
T ss_pred HHHHcCCCCchHHHHHHHHHhccc
Confidence 999999999999998888888875
No 224
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.37 E-value=5.3 Score=39.50 Aligned_cols=163 Identities=12% Similarity=0.037 Sum_probs=102.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCHHhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006615 141 MNLMQWYSTSGDLELVLSTWNEYRQRA---KLLSTESYNIVMSVYAK---TGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214 (638)
Q Consensus 141 ~~ll~~~~~~g~~~~A~~l~~~m~~~~---~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ty~~li 214 (638)
..++-.|....+++...++.+.|.... +.-+...--...-++.+ .|+-++|++++..+....-.++..||..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 345556888999999999999998752 11122222244556667 899999999999977766678889999888
Q ss_pred HHHHH---------cCCHHHHHHHHHhcccCCCccCHhH---HHHHHHHHHccC-CHHHHHHHH---H-HHHhCCCCC-C
Q 006615 215 EHLVN---------LGKLDSALEVFSALPLMRIKRTSKQ---YLILVEGFVGVE-RFDEAKSLL---N-EMRDDGKFP-G 276 (638)
Q Consensus 215 ~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g-~~~~A~~l~---~-~m~~~g~~p-~ 276 (638)
+.|-. ...+++|...|.+--+. .||..+ +.+|+....... .-.+..++- . ...+.|... .
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 77642 12377788888765432 354433 233333332211 112233332 2 222344332 2
Q ss_pred H-HH-H-HHHHHHHHcCChHHHHHHHHHhCcC
Q 006615 277 R-AM-R-VALERMQEMGFIQGANEFLREMLPD 305 (638)
Q Consensus 277 ~-~~-~-~ll~~~~~~g~~~~a~~~~~~~~~~ 305 (638)
. .| + +++.+..-.|+.++|.+..+.+...
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2 23 2 6788889999999999999998643
No 225
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=5.8 Score=38.99 Aligned_cols=138 Identities=10% Similarity=-0.044 Sum_probs=81.1
Q ss_pred CCHHHHHHHH-HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HcccCCHHHHHHHHHhchhccCCCc-----
Q 006615 404 HDVYALEKML-TILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF--YGISKKADAALKAFHDDRTLCGPIS----- 475 (638)
Q Consensus 404 p~~~~~~~li-~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~----- 475 (638)
|...+|-.+- .++.-.|+++.|..+-....+.. ....+...+++ +--.++.+.|...|++.....+...
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA 242 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH
Confidence 4444554432 24456677777776666555443 12233334433 2335667777777777654422111
Q ss_pred --chhHHHHHHHHHHHHHccCChHHHHHHHHHHHhC---CCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615 476 --KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS---GIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544 (638)
Q Consensus 476 --~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 544 (638)
.|.....|.--.+-..+.|++.+|.+.|.+.+.. ..+|+...|.....+..+.|+.++|+.--++....
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i 316 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI 316 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc
Confidence 1111233444445567788888888888888763 34566667777777778888888888777766653
No 226
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=3.1 Score=39.15 Aligned_cols=114 Identities=14% Similarity=0.035 Sum_probs=86.5
Q ss_pred CCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCCHHHH
Q 006615 134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT---GKNFEAVETFRQVIDEGAIPNSRTY 210 (638)
Q Consensus 134 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~ty 210 (638)
+.|...|-.|...|...|+++.|..-|.+..+.. .+|...+..+..++... ....++.++|+++.+.... |..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 5678889999999999999999999999988763 46677777777665543 3457889999999885322 56666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHH
Q 006615 211 TVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251 (638)
Q Consensus 211 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 251 (638)
..|-..+...|++.+|...|+.|.+.. |....+..+|..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~ 269 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHH
Confidence 777778899999999999999998753 444445555543
No 227
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.02 E-value=7.2 Score=38.90 Aligned_cols=25 Identities=24% Similarity=0.147 Sum_probs=13.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHH
Q 006615 244 QYLILVEGFVGVERFDEAKSLLNEM 268 (638)
Q Consensus 244 ~~~~li~~~~~~g~~~~A~~l~~~m 268 (638)
++..++....+.++...|.+.+.-+
T Consensus 300 ~F~~~Ls~~Vk~~~T~~a~q~l~lL 324 (549)
T PF07079_consen 300 RFGNLLSFKVKQVQTEEAKQYLALL 324 (549)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4555555555555555555555443
No 228
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.82 E-value=2.9 Score=43.40 Aligned_cols=177 Identities=16% Similarity=0.104 Sum_probs=111.4
Q ss_pred HHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCch------HhHHHHHHHHHh----cCCHH
Q 006615 85 ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVS------VNFMNLMQWYST----SGDLE 154 (638)
Q Consensus 85 Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~------~~~~~ll~~~~~----~g~~~ 154 (638)
..-+|.-+..- -|. .+..++...+=.|+-+.+.+.+.+-.+.+-...+ ..|+..+..++- ..+.+
T Consensus 176 G~G~f~L~lSl---LPp--~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 176 GFGLFNLVLSL---LPP--KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHh---CCH--HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 34455555532 232 5677778888888888888887776553222221 234555544443 45788
Q ss_pred HHHHHHHHHHhcCCCCCHHhHHHHH-HHHHhcCChHHHHHHHHHHHHcC--C-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006615 155 LVLSTWNEYRQRAKLLSTESYNIVM-SVYAKTGKNFEAVETFRQVIDEG--A-IPNSRTYTVMIEHLVNLGKLDSALEVF 230 (638)
Q Consensus 155 ~A~~l~~~m~~~~~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g--~-~p~~~ty~~li~~~~~~g~~~~A~~~~ 230 (638)
.|.++++.+.++= |+...|...- +.+...|++++|.+.|++..... . +.....+--+.-.+.-.+++++|.+.|
T Consensus 251 ~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 251 EAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 8999999998863 6666665554 44667899999999998755321 1 123344445566678889999999999
Q ss_pred HhcccCCCccCHhHHHHHH-HHHHccCCH-------HHHHHHHHHHH
Q 006615 231 SALPLMRIKRTSKQYLILV-EGFVGVERF-------DEAKSLLNEMR 269 (638)
Q Consensus 231 ~~m~~~g~~p~~~~~~~li-~~~~~~g~~-------~~A~~l~~~m~ 269 (638)
..+.+.. .-+..+|.-+. .++...|+. ++|.++|.+..
T Consensus 329 ~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 329 LRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 9988632 12233343333 334456777 88888888873
No 229
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.73 E-value=6.2 Score=37.12 Aligned_cols=151 Identities=15% Similarity=0.047 Sum_probs=97.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 006615 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLD 224 (638)
Q Consensus 145 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 224 (638)
......|++.+|..+|+...... +-+...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 44567889999999998887764 23356667788889999999999999988876422222233223344455555544
Q ss_pred HHHHHHHhcccCCCcc-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCChHHHHHHH
Q 006615 225 SALEVFSALPLMRIKR-TSKQYLILVEGFVGVERFDEAKSLLNEMRDD--GKFPGRAMRVALERMQEMGFIQGANEFL 299 (638)
Q Consensus 225 ~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~~~~ll~~~~~~g~~~~a~~~~ 299 (638)
+...+-++.-. .| |...--.+-..+...|+.++|.+.+-.+.+. |...+..--.++..+.--|.-+.+.-.+
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 44444444433 35 5666677888889999999999887777544 4444444446676666666444443333
No 230
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=8.1 Score=38.04 Aligned_cols=159 Identities=9% Similarity=-0.093 Sum_probs=101.6
Q ss_pred HHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHHHH---HHH---
Q 006615 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILA--RHGHVELVDRLIAKLRSDGMRLPFSTI---RLI--- 447 (638)
Q Consensus 376 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~--~~g~~~~a~~l~~~m~~~g~~~~~~~~---~~l--- 447 (638)
-+..+...++++.|.+.-..+.+... ...+...+++.| -.++.+.|...|++....+ |+...- ...
T Consensus 175 ka~cl~~~~~~~~a~~ea~~ilkld~----~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~ 248 (486)
T KOG0550|consen 175 KAECLAFLGDYDEAQSEAIDILKLDA----TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKK 248 (486)
T ss_pred hhhhhhhcccchhHHHHHHHHHhccc----chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHH
Confidence 34455556777777766555543321 122333343332 3466777777777766544 222111 111
Q ss_pred -------HHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhh-HH
Q 006615 448 -------IDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQT-FS 519 (638)
Q Consensus 448 -------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~ 519 (638)
.+-..+.|++..|.+.|.+.....+...+++ +..|-.......+.|+.++|+.--++..+. |..- ..
T Consensus 249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~n-aklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syika 323 (486)
T KOG0550|consen 249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTN-AKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKA 323 (486)
T ss_pred HHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchh-HHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHH
Confidence 1234578999999999999888777666666 478888888899999999999998888763 4332 22
Q ss_pred HHH--HHHHccCCHHHHHHHHHHHHhCC
Q 006615 520 GLM--YHFALQGDEKIVQKLFSMVRQNG 545 (638)
Q Consensus 520 ~li--~~~~~~g~~~~a~~l~~~m~~~~ 545 (638)
.+. .++...+++++|++-++...+..
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 222 35556788999999998777653
No 231
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.44 E-value=3.5 Score=33.45 Aligned_cols=66 Identities=11% Similarity=0.102 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 006615 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE 547 (638)
Q Consensus 481 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~ 547 (638)
...+..++.+.+.|+-+.-.+++.++.+. -.++....-.+..||.+.|+..++.+++++..+.|++
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 35567788889999999999999998763 3678888888999999999999999999999999863
No 232
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.40 E-value=5.9 Score=35.86 Aligned_cols=180 Identities=13% Similarity=0.121 Sum_probs=97.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCC--CCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHH
Q 006615 106 HALATVLAKSQRNHELKTLIGDISSSKF--LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183 (638)
Q Consensus 106 ~~li~~~~~~~~~~~a~~l~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 183 (638)
-.....+...|++.+|...|+.+..... +--....-.+..++.+.|+++.|...+++....--.-....+...+.+.+
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 3344556678999999999998876421 11223345677888899999999999999876531111222333444433
Q ss_pred hcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHH
Q 006615 184 KTGKNFEAVETFRQVIDEGAIP---NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260 (638)
Q Consensus 184 ~~g~~~~A~~~~~~m~~~g~~p---~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 260 (638)
......... ........ -...|..++.-|-...-..+|.+.+..+.+ ..-..- -.+...|.+.|.+..
T Consensus 89 ~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~---~la~~e-~~ia~~Y~~~~~y~a 159 (203)
T PF13525_consen 89 YYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRN---RLAEHE-LYIARFYYKRGKYKA 159 (203)
T ss_dssp HHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH---HHHHHH-HHHHHHHHCTT-HHH
T ss_pred HHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHHcccHHH
Confidence 222111110 00000000 012344555555556666677666655542 111111 225677899999999
Q ss_pred HHHHHHHHHhCCCCCCH-----HHHHHHHHHHHcCChHHHH
Q 006615 261 AKSLLNEMRDDGKFPGR-----AMRVALERMQEMGFIQGAN 296 (638)
Q Consensus 261 A~~l~~~m~~~g~~p~~-----~~~~ll~~~~~~g~~~~a~ 296 (638)
|..-++.+.+. -|+. ....++.++.+.|..+.+.
T Consensus 160 A~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 160 AIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99999988775 3333 2345678888888877544
No 233
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.34 E-value=9.4 Score=38.03 Aligned_cols=148 Identities=16% Similarity=0.200 Sum_probs=106.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHH
Q 006615 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDG-MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLY 483 (638)
Q Consensus 405 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 483 (638)
-...|+..|.+.-+..-++.|..+|-+..+.| +.+++.+++++|.-++ .|+..-|.++|+.-.... ||...--
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-----~d~~~y~ 469 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-----PDSTLYK 469 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-----CCchHHH
Confidence 35678888888888888999999999999999 6778889999998766 577788899998755442 2322334
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCcc--hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 006615 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPD--VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYC 561 (638)
Q Consensus 484 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~ 561 (638)
+-.+.-+...++-+.|..+|+...+. +.-+ ...|..+|..=..-|++..+..+=+.|... -|...+.......|.
T Consensus 470 ~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 470 EKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 55566777889999999999955442 1122 457888888888889998888777777753 455444444444443
No 234
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.33 E-value=2.4 Score=40.21 Aligned_cols=154 Identities=8% Similarity=-0.038 Sum_probs=96.9
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHH----HHHHHHHhcCC
Q 006615 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYN----IVMSVYAKTGK 187 (638)
Q Consensus 112 ~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~----~li~~~~~~g~ 187 (638)
+-..|+..+|-..++++.+. .+.|...++..-.+|.-.|+.+.-...++++.-. ..+|...|. .+.-++..+|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34567777777777777764 4667777777778888888888888888877654 123443333 33344567788
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC---CCccCHhHHHHHHHHHHccCCHHHHHHH
Q 006615 188 NFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLM---RIKRTSKQYLILVEGFVGVERFDEAKSL 264 (638)
Q Consensus 188 ~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~l 264 (638)
+++|.+.-++..+-+- -|...-.++...+--.|++.++.++..+-... +--.-...|=-..-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 8888888777766432 25666667777777778888888877654431 1001112222233345566888888888
Q ss_pred HHHH
Q 006615 265 LNEM 268 (638)
Q Consensus 265 ~~~m 268 (638)
|+.=
T Consensus 270 yD~e 273 (491)
T KOG2610|consen 270 YDRE 273 (491)
T ss_pred HHHH
Confidence 8754
No 235
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.26 E-value=1.4 Score=35.58 Aligned_cols=94 Identities=14% Similarity=0.031 Sum_probs=61.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccC
Q 006615 415 ILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCK 494 (638)
Q Consensus 415 ~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 494 (638)
+++..|+++.|++.|.+....-.. ....||.-.+++.-.|+.++|+.=+++..+..++..+... .+|..-...|-..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtac-qa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTAC-QAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHH-HHHHHHHHHHHHhC
Confidence 456777888888877776654322 5567777777777777777777777777666554433221 34444445566677
Q ss_pred ChHHHHHHHHHHHhCC
Q 006615 495 RDFDAINVLEEMIFSG 510 (638)
Q Consensus 495 ~~~~A~~l~~~m~~~g 510 (638)
+.+.|..-|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7888887777776655
No 236
>PRK15331 chaperone protein SicA; Provisional
Probab=93.16 E-value=2 Score=36.55 Aligned_cols=87 Identities=9% Similarity=-0.010 Sum_probs=47.1
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006615 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSA 226 (638)
Q Consensus 147 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A 226 (638)
+-..|++++|..+|.-+...+. -|..-|..|..++-..+++++|...|...-..+. -|...+--.-.+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 3456666666666666655431 2233444555555556666666666665544332 1333344444555666666666
Q ss_pred HHHHHhccc
Q 006615 227 LEVFSALPL 235 (638)
Q Consensus 227 ~~~~~~m~~ 235 (638)
.+.|+....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666655543
No 237
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.70 E-value=11 Score=38.32 Aligned_cols=165 Identities=12% Similarity=0.109 Sum_probs=91.4
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhc
Q 006615 71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS 150 (638)
Q Consensus 71 ~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~ 150 (638)
.++..-.+..++..-++.-+++.+.. |+..+ ..++-+--......++++++++..+.|- .. +.+.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~---pdCAd-AYILLAEEeA~Ti~Eae~l~rqAvkAgE----~~-------lg~s 237 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEIN---PDCAD-AYILLAEEEASTIVEAEELLRQAVKAGE----AS-------LGKS 237 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhh---hhhhH-HHhhcccccccCHHHHHHHHHHHHHHHH----Hh-------hchh
Confidence 35555667777777777766666432 33211 1122222335567888888887765431 00 1111
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Q 006615 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI-PNSRTYTVMIEHLVNLGKLDSALEV 229 (638)
Q Consensus 151 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~ty~~li~~~~~~g~~~~A~~~ 229 (638)
...+..-..++....++..|=..+-.-+..++-+.|+.++|.+.|++|.+.... -+......|+.++...+.+.++..+
T Consensus 238 ~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 238 QFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred hhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 111111112222333332222333344666667789999999999999875311 1334566788899999999999998
Q ss_pred HHhcccCCCccC-HhHHHHHHH
Q 006615 230 FSALPLMRIKRT-SKQYLILVE 250 (638)
Q Consensus 230 ~~~m~~~g~~p~-~~~~~~li~ 250 (638)
+.+-.+.....+ ..+|+..+-
T Consensus 318 L~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 318 LAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred HHHhccccCCchHHHHHHHHHH
Confidence 888765333222 345666543
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.52 E-value=9.5 Score=35.93 Aligned_cols=143 Identities=16% Similarity=0.153 Sum_probs=69.8
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHH
Q 006615 112 LAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191 (638)
Q Consensus 112 ~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 191 (638)
....+++.++..+|+........ +...--.+...|...|+.+.|..+++.+....-.........-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34556666666666665543221 12233455666666666666666666665442111111112223344444444444
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhccc--CCCccCHhHHHHHHHHHHccCCHH
Q 006615 192 VETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALPL--MRIKRTSKQYLILVEGFVGVERFD 259 (638)
Q Consensus 192 ~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~ 259 (638)
..+-.+.-.. | |...-..+...+...|+.++|.+.+-.+.+ .|. -|...-..|+..+.--|.-+
T Consensus 223 ~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 223 QDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred HHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcCCCC
Confidence 4444444432 4 444444555566666666666554443332 222 24445555666665555333
No 239
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.51 E-value=3.7 Score=40.25 Aligned_cols=103 Identities=15% Similarity=0.012 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 006615 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAY 560 (638)
Q Consensus 481 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~ 560 (638)
.++..+..+|.+.+++.+|++.-+..+..+ ++|+...--=-.+|...|+++.|...|+.+++. .|+..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nk--------- 325 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNK--------- 325 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcH---------
Confidence 578888899999999999999999988864 456666666678999999999999999999984 44422
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHhccCcHH-HHHHHHHHHHHccCCCCc
Q 006615 561 CKYLSNSNLMPDAATKELLKKSLWKEGRRK-EAAAVEERCEKINDVPSL 608 (638)
Q Consensus 561 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~~~~~ 608 (638)
..-+-|+.+--+....+ ...++|..|-..-...+.
T Consensus 326 -------------a~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~~~~ 361 (397)
T KOG0543|consen 326 -------------AARAELIKLKQKIREYEEKEKKMYANMFAKLAEESA 361 (397)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 22233444444444443 347788888776554433
No 240
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.39 E-value=1.5 Score=41.33 Aligned_cols=76 Identities=17% Similarity=0.260 Sum_probs=52.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 006615 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID-----EGAIPNSRTYTVM 213 (638)
Q Consensus 139 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~ty~~l 213 (638)
++..++..+..+|+++.+...++++.... +-|...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 35667777777777777777777777764 45677777777777777777777777777665 3666665555444
Q ss_pred HH
Q 006615 214 IE 215 (638)
Q Consensus 214 i~ 215 (638)
..
T Consensus 234 ~~ 235 (280)
T COG3629 234 EE 235 (280)
T ss_pred HH
Confidence 33
No 241
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.27 E-value=9.3 Score=35.25 Aligned_cols=54 Identities=22% Similarity=0.172 Sum_probs=27.8
Q ss_pred HcCCChhHHHHHHHHHHcCCCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006615 77 RSAPNADSALSIMEALKSNPNFSH-NQSTLHALATVLAKSQRNHELKTLIGDISS 130 (638)
Q Consensus 77 ~~~~~~~~Al~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~l~~~~~~ 130 (638)
...|++++|.+-|+.+....++.| ...+.-.++-++-+.+++++|...+++..+
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 345666666666666654333322 333344444455555566666555555543
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.18 E-value=8.1 Score=40.20 Aligned_cols=179 Identities=19% Similarity=0.159 Sum_probs=123.2
Q ss_pred HHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC-----CHHhHHHHHHHHHh----cCChH
Q 006615 120 ELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA-KLL-----STESYNIVMSVYAK----TGKNF 189 (638)
Q Consensus 120 ~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~-~~p-----~~~~~~~li~~~~~----~g~~~ 189 (638)
-..-+|+-+.+. +||. ...++...+=.||-+.+++++.+-.+.+ +.- -.-.|+.++..++- ..+.+
T Consensus 175 ~G~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 175 FGFGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 344566666663 3333 5678888888899999999888765532 221 12246666655544 45789
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHhcccCC--C-ccCHhHHHHHHHHHHccCCHHHHHHHH
Q 006615 190 EAVETFRQVIDEGAIPNSRTYTVMI-EHLVNLGKLDSALEVFSALPLMR--I-KRTSKQYLILVEGFVGVERFDEAKSLL 265 (638)
Q Consensus 190 ~A~~~~~~m~~~g~~p~~~ty~~li-~~~~~~g~~~~A~~~~~~m~~~g--~-~p~~~~~~~li~~~~~~g~~~~A~~l~ 265 (638)
.|.+++..+.+. -|+..-|...- +.+...|++++|.+.|+...... . +.....+--+.-.+.-..++++|.+.|
T Consensus 251 ~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 251 EAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 999999999985 68877776544 45667899999999999754321 1 123445666777888899999999999
Q ss_pred HHHHhCCCCCCHHHH--HHHHHHHHcCCh-------HHHHHHHHHhCcC
Q 006615 266 NEMRDDGKFPGRAMR--VALERMQEMGFI-------QGANEFLREMLPD 305 (638)
Q Consensus 266 ~~m~~~g~~p~~~~~--~ll~~~~~~g~~-------~~a~~~~~~~~~~ 305 (638)
.++.+..-- ...+| ....++...|+. ++|.++|+++.+-
T Consensus 329 ~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 329 LRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 999774322 23444 444555677887 8999999987543
No 243
>PRK11906 transcriptional regulator; Provisional
Probab=91.86 E-value=10 Score=38.36 Aligned_cols=20 Identities=15% Similarity=0.306 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHcCCCCCCC
Q 006615 82 ADSALSIMEALKSNPNFSHN 101 (638)
Q Consensus 82 ~~~Al~~~~~~~~~~~~~~~ 101 (638)
.+.|+.+|.+........|+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~ 293 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTL 293 (458)
T ss_pred HHHHHHHHHHHhhcccCCcc
Confidence 55688888888743345555
No 244
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.84 E-value=2.6 Score=43.17 Aligned_cols=128 Identities=11% Similarity=0.182 Sum_probs=72.7
Q ss_pred HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG 151 (638)
Q Consensus 72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g 151 (638)
+++=|.+.|-++.|+.+-..-.. =.....+.|+++.|.++.++ ..+...|..|.+...+.|
T Consensus 301 i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 301 IARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcC
Confidence 56666777777777765433221 22334456777766665432 234556777777777777
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006615 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231 (638)
Q Consensus 152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~ 231 (638)
+++-|.+.|++... |..|+-.|.-.|+.+.-.++-+.....|- +|....++.-.|++++..+++.
T Consensus 362 ~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 362 NIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp BHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred CHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 77777777765432 55566666666776666666665555542 4445555555666666666665
Q ss_pred hc
Q 006615 232 AL 233 (638)
Q Consensus 232 ~m 233 (638)
+-
T Consensus 427 ~~ 428 (443)
T PF04053_consen 427 ET 428 (443)
T ss_dssp HT
T ss_pred Hc
Confidence 54
No 245
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.80 E-value=13 Score=35.73 Aligned_cols=61 Identities=13% Similarity=0.144 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHccCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhC
Q 006615 243 KQYLILVEGFVGVERFD---EAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREML 303 (638)
Q Consensus 243 ~~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 303 (638)
.+...++.+|...+..+ +|..+++.+......+-....--+..+.+.++.+++.+.+.+|.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 45666777777766644 45556666644433322233233444555777777777777764
No 246
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.76 E-value=7.7 Score=33.26 Aligned_cols=138 Identities=17% Similarity=0.148 Sum_probs=73.4
Q ss_pred CHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchH-hHHHHHH-
Q 006615 68 DPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV-NFMNLMQ- 145 (638)
Q Consensus 68 ~~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~-~~~~ll~- 145 (638)
+.|...--+.+.+..++|+.-|..+.+.+.-....-..-.........|+...|...|+++-+....|-.. -...|=.
T Consensus 60 d~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 60 DAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 33444445566777777777777776553111121122233334456677777777777766543333222 1111111
Q ss_pred -HHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006615 146 -WYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP 205 (638)
Q Consensus 146 -~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 205 (638)
.+...|.+++...-.+-+...+-+--...-..|--+-.+.|++.+|...|.++......|
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 233556666666666666554433334444555555666777777777777766644444
No 247
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.63 E-value=4.7 Score=38.35 Aligned_cols=152 Identities=11% Similarity=-0.001 Sum_probs=110.0
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHHcCC
Q 006615 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV----MIEHLVNLGK 222 (638)
Q Consensus 147 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~----li~~~~~~g~ 222 (638)
..-.|+..+|-..++++.+. .+.|..+++..=.+|.-.|+.+.-...+++..-. -.||...|.. ..-++..+|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34568888999999999876 6788999999999999999999999998888754 2344433333 3334568999
Q ss_pred HHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCChHHHHHH
Q 006615 223 LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR----AMRVALERMQEMGFIQGANEF 298 (638)
Q Consensus 223 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~~~~ll~~~~~~g~~~~a~~~ 298 (638)
+++|++.-++..+.+ +-|...-.++...+--.|+..++.++..+-...=-..+. .+......+...+.++.|.++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999998887644 346667778888888899999999987765332111111 112333445677999999999
Q ss_pred HHH
Q 006615 299 LRE 301 (638)
Q Consensus 299 ~~~ 301 (638)
|+.
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 875
No 248
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.61 E-value=8.1 Score=33.16 Aligned_cols=139 Identities=17% Similarity=0.221 Sum_probs=93.1
Q ss_pred chHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHH-----HHHHHhcCChHHHHHHHHHHHHcCCCCCHH-H
Q 006615 136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV-----MSVYAKTGKNFEAVETFRQVIDEGAIPNSR-T 209 (638)
Q Consensus 136 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t 209 (638)
+...|..-++ +++.+..++|+.-|..+.+.|.. .|-.| .....+.|+...|...|++.-.....|-.. -
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g----~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd 132 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYG----SYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRD 132 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCC----cchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhH
Confidence 3344555555 46778888999999998888733 34333 234667889999999999888765444432 1
Q ss_pred HHHHHH--HHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 006615 210 YTVMIE--HLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM 279 (638)
Q Consensus 210 y~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 279 (638)
..-|=. .+...|.++......+-+...|-..-...-.+|--+-.+.|++..|...|..+....-.|....
T Consensus 133 ~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprnir 204 (221)
T COG4649 133 LARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNIR 204 (221)
T ss_pred HHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHHH
Confidence 111112 2456788888888777776544333444556777777889999999999998887766676544
No 249
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.44 E-value=2 Score=35.66 Aligned_cols=58 Identities=12% Similarity=-0.017 Sum_probs=32.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCC
Q 006615 416 LARHGHVELVDRLIAKLRSDGMR--LPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGP 473 (638)
Q Consensus 416 ~~~~g~~~~a~~l~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 473 (638)
..+.|+++.|.+.|+.+...-.. -....--.++.+|.+.+++++|...+++..+.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 44566677777777666654221 12234444555666666666666666665555444
No 250
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.06 E-value=4.9 Score=35.33 Aligned_cols=63 Identities=17% Similarity=0.170 Sum_probs=43.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006615 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLL--STESYNIVMSVYAKTGKNFEAVETFRQVID 200 (638)
Q Consensus 138 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 200 (638)
..+..+...|++.|+.+.|.+.|.++.+....+ -...+-.+|....-.+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346677788888888888888888877664333 234466677777777788777777666654
No 251
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.05 E-value=3.1 Score=38.60 Aligned_cols=96 Identities=15% Similarity=0.181 Sum_probs=56.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC-CHHHHHHHH
Q 006615 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRA--KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEG-AIP-NSRTYTVMI 214 (638)
Q Consensus 139 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p-~~~ty~~li 214 (638)
.|+.-+.. .+.|++..|...|....+.. -.-...++-.|..++...|++++|...|..+.+.- -.| -+.++--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 36655553 35566777777777766552 01122334556777777777777777777776641 111 134455555
Q ss_pred HHHHHcCCHHHHHHHHHhccc
Q 006615 215 EHLVNLGKLDSALEVFSALPL 235 (638)
Q Consensus 215 ~~~~~~g~~~~A~~~~~~m~~ 235 (638)
....+.|+.++|..+|+++.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 566667777777777776654
No 252
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.03 E-value=9.5 Score=32.91 Aligned_cols=131 Identities=16% Similarity=0.152 Sum_probs=63.4
Q ss_pred HHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCC
Q 006615 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR 237 (638)
Q Consensus 158 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g 237 (638)
+....+.+.+++|+...|..+|+.+.+.|++. .+.++...++-||.......+-.+.. ....+.++=-.|.+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLk-- 86 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLK-- 86 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHH--
Confidence 34444555666666667777777777766544 33444445555565555544433322 12222222222221
Q ss_pred CccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHH
Q 006615 238 IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLRE 301 (638)
Q Consensus 238 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~ 301 (638)
.=...+..++..+...|++-+|+++.+......-. ....++.+..+.++...-..+++-
T Consensus 87 --RL~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~---~~~~fLeAA~~~~D~~lf~~V~~f 145 (167)
T PF07035_consen 87 --RLGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSV---PARKFLEAAANSNDDQLFYAVFRF 145 (167)
T ss_pred --HhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccC---CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 00113555666667777777777766654221111 122344555555554444444443
No 253
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.74 E-value=3.1 Score=38.57 Aligned_cols=100 Identities=11% Similarity=-0.042 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHH
Q 006615 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRL--PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS 484 (638)
Q Consensus 407 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 484 (638)
..|+.-+. +.+.|++..|..-|...++....- ....+--|..++...|++++|-.+|..+.+..+..++-. .+.-
T Consensus 143 ~~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KAp--dall 219 (262)
T COG1729 143 KLYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAP--DALL 219 (262)
T ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCCh--HHHH
Confidence 35666554 445677888888888888765331 123333466777777777777777777776655544332 3555
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhC
Q 006615 485 SLLRTLTKCKRDFDAINVLEEMIFS 509 (638)
Q Consensus 485 ~li~~~~~~g~~~~A~~l~~~m~~~ 509 (638)
-|.....+.|+.++|..+|++..+.
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 6666667777777777777777664
No 254
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=90.74 E-value=18 Score=35.53 Aligned_cols=128 Identities=13% Similarity=0.041 Sum_probs=83.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHH
Q 006615 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTL 490 (638)
Q Consensus 411 ~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 490 (638)
.-..++.+.|+..++-.+++.+-+....|+.. .+..+.+.|+. +..-+++.+... ..+||...+--.+..+-
T Consensus 268 ~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdt--a~dRlkRa~~L~--slk~nnaes~~~va~aA 339 (531)
T COG3898 268 VAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDT--ALDRLKRAKKLE--SLKPNNAESSLAVAEAA 339 (531)
T ss_pred HHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCc--HHHHHHHHHHHH--hcCccchHHHHHHHHHH
Confidence 34567889999999999999998887666642 23334566652 222222222111 12566556666777777
Q ss_pred HccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHH-HccCCHHHHHHHHHHHHhCCCCC
Q 006615 491 TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF-ALQGDEKIVQKLFSMVRQNGVEP 548 (638)
Q Consensus 491 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~-~~~g~~~~a~~l~~~m~~~~~~p 548 (638)
...|++..|..--+.... ..|....|-.|.+.- +..|+-.++...+.+..+.--.|
T Consensus 340 lda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 340 LDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 888998887766655554 368888888777644 45599899988888777654333
No 255
>PRK15331 chaperone protein SicA; Provisional
Probab=90.55 E-value=2 Score=36.56 Aligned_cols=82 Identities=17% Similarity=0.022 Sum_probs=32.6
Q ss_pred cCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHH
Q 006615 220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFL 299 (638)
Q Consensus 220 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~ 299 (638)
.|++++|..+|+-+...+. -|..-|..|..++-..+++++|+..|......+...-...+.+-.++...|+.+.|..-|
T Consensus 50 ~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f 128 (165)
T PRK15331 50 QGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCF 128 (165)
T ss_pred CCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHH
Confidence 4444444444444333221 122233334444444444444444444433322211112233344444444444444444
Q ss_pred HHh
Q 006615 300 REM 302 (638)
Q Consensus 300 ~~~ 302 (638)
...
T Consensus 129 ~~a 131 (165)
T PRK15331 129 ELV 131 (165)
T ss_pred HHH
Confidence 443
No 256
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.39 E-value=6.9 Score=31.73 Aligned_cols=91 Identities=14% Similarity=0.049 Sum_probs=66.2
Q ss_pred HHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHH---HHHHHHhcC
Q 006615 75 ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMN---LMQWYSTSG 151 (638)
Q Consensus 75 ~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~---ll~~~~~~g 151 (638)
++...|+++.|++.|......- +-....||.-..++.-.|+.++|.+-+++..+..-........+ -...|-..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 5678899999999999887542 23455899999999999999999998888765322223322222 334566778
Q ss_pred CHHHHHHHHHHHHhcC
Q 006615 152 DLELVLSTWNEYRQRA 167 (638)
Q Consensus 152 ~~~~A~~l~~~m~~~~ 167 (638)
+.+.|..=|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8899998888877766
No 257
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.35 E-value=2.5 Score=39.74 Aligned_cols=108 Identities=21% Similarity=0.141 Sum_probs=77.9
Q ss_pred cCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcc
Q 006615 435 DGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514 (638)
Q Consensus 435 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 514 (638)
.|......+...++..-....+++.+..++-..+.....-..|+. +-...+..|. .-+.++++.++..=+..|+-||
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~--~~~~~irlll-ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW--TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc--cHHHHHHHHH-ccChHHHHHHHhCcchhccccc
Confidence 455556667777777777778889988888776653322222221 1222333333 3467799999999999999999
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615 515 VQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545 (638)
Q Consensus 515 ~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~ 545 (638)
.++++.+|+.+.+.+++.+|..+.-.|....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887777544
No 258
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.30 E-value=1.2 Score=28.47 Aligned_cols=27 Identities=11% Similarity=0.085 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 006615 140 FMNLMQWYSTSGDLELVLSTWNEYRQR 166 (638)
Q Consensus 140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~ 166 (638)
+..+..+|.+.|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555555555555555555555554
No 259
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.17 E-value=29 Score=37.15 Aligned_cols=111 Identities=14% Similarity=0.052 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHH
Q 006615 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS 484 (638)
Q Consensus 405 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 484 (638)
.--+.+.-+.-+...|+..+|.++-.+.+ .||-..|-.=+.+++..+++++-+++-+..+. +..|.
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks----------PIGy~ 748 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS----------PIGYL 748 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC----------CCCch
Confidence 33445566667777888888887766654 46777777778888888888887777766432 14677
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHH
Q 006615 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF 538 (638)
Q Consensus 485 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~ 538 (638)
.....|.+.|+.++|.+.+-+... +.-...+|.+.|++.+|.++-
T Consensus 749 PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 749 PFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHH
Confidence 778888889998888887754432 114567788888887776654
No 260
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.01 E-value=0.01 Score=50.42 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=18.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHH
Q 006615 113 AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTW 160 (638)
Q Consensus 113 ~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~ 160 (638)
.+.+.+..+...++.+...+...+....+.++..|++.++.+...+++
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 18 EERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp TTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 333444444444444443332333334444444444444434444333
No 261
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.79 E-value=19 Score=34.46 Aligned_cols=222 Identities=12% Similarity=0.052 Sum_probs=126.4
Q ss_pred HcCCChhHHHHHHHHHHcCC-CCCCChh------HHHHHHHHHHhcC-ChHHHHHHHHHHHhC--------CCCCch---
Q 006615 77 RSAPNADSALSIMEALKSNP-NFSHNQS------TLHALATVLAKSQ-RNHELKTLIGDISSS--------KFLNVS--- 137 (638)
Q Consensus 77 ~~~~~~~~Al~~~~~~~~~~-~~~~~~~------~~~~li~~~~~~~-~~~~a~~l~~~~~~~--------~~~~~~--- 137 (638)
.+.|+.+.|..++.++.... ...|+.. .|+.- ..+...+ +++.|..++++..+- ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G-~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIG-KSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHH-HHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46789999999999888543 3344321 22222 2233455 888887776654321 122332
Q ss_pred --HhHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 006615 138 --VNFMNLMQWYSTSGDLE---LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212 (638)
Q Consensus 138 --~~~~~ll~~~~~~g~~~---~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ 212 (638)
.++..|+.+|...+..+ +|..+++.+.... +-....+-.-+..+.+.++.+++.+.+.+|...- .-....+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 35667888888888665 4556666664432 2225566666777777899999999999999862 213445555
Q ss_pred HHHHH---HHcCCHHHHHHHHHhcccCCCccCHh-HHH-HHHH-HH--HccC------CHHHHHHHHHHHHhC---CCCC
Q 006615 213 MIEHL---VNLGKLDSALEVFSALPLMRIKRTSK-QYL-ILVE-GF--VGVE------RFDEAKSLLNEMRDD---GKFP 275 (638)
Q Consensus 213 li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~-~li~-~~--~~~g------~~~~A~~l~~~m~~~---g~~p 275 (638)
++..+ .... ...|...++.+....+.|... ... .++. .+ .+.+ +++...++++...+. .+.+
T Consensus 161 ~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 161 ILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 55554 3333 355666666665544455443 111 1111 11 1111 245555556544332 2222
Q ss_pred CHHH-H-HH----HHHHHHcCChHHHHHHHHHh
Q 006615 276 GRAM-R-VA----LERMQEMGFIQGANEFLREM 302 (638)
Q Consensus 276 ~~~~-~-~l----l~~~~~~g~~~~a~~~~~~~ 302 (638)
.... . ++ ...+.+.+++++|.++|+--
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 2211 1 22 35678899999999998743
No 262
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.79 E-value=4.8 Score=39.54 Aligned_cols=94 Identities=10% Similarity=0.102 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHH
Q 006615 208 RTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM--RVALER 285 (638)
Q Consensus 208 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~--~~ll~~ 285 (638)
.++..|.-+|.+.+++..|.+.-++....+ ++|+-..--=-.++...|+++.|...|+++.+. .|++-. ..++..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 356667777888888888888888877654 456666666677888888999999999888774 455433 233333
Q ss_pred HHHcCCh-HHHHHHHHHhCc
Q 006615 286 MQEMGFI-QGANEFLREMLP 304 (638)
Q Consensus 286 ~~~~g~~-~~a~~~~~~~~~ 304 (638)
-.+.... +...++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 3333333 334667777753
No 263
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.57 E-value=4.5 Score=35.58 Aligned_cols=97 Identities=15% Similarity=0.129 Sum_probs=68.4
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCcc-CHhHHH--H
Q 006615 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN--SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR-TSKQYL--I 247 (638)
Q Consensus 173 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~--~ 247 (638)
..+..+..-|++.|+.++|.+.|.++.+....|. ...+-.+|+.....|++..+.....+....--.+ |...-| .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4578889999999999999999999998755543 4456778888999999999888877765421111 122111 1
Q ss_pred HHH--HHHccCCHHHHHHHHHHHH
Q 006615 248 LVE--GFVGVERFDEAKSLLNEMR 269 (638)
Q Consensus 248 li~--~~~~~g~~~~A~~l~~~m~ 269 (638)
... .+...+++.+|-+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 111 2334689999999888764
No 264
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.55 E-value=0.65 Score=29.70 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHccCCC
Q 006615 574 ATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606 (638)
Q Consensus 574 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (638)
.++..+...|.+.|++++|++++++..+..+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 357788999999999999999999999987543
No 265
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.36 E-value=0.75 Score=27.84 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=23.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 006615 575 TKELLKKSLWKEGRRKEAAAVEERCEKI 602 (638)
Q Consensus 575 ~~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (638)
+|..|...|.+.|++++|++++++..+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4778999999999999999999996543
No 266
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.22 E-value=11 Score=30.79 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006615 209 TYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273 (638)
Q Consensus 209 ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 273 (638)
-+...++...+.|+-|.-.+++.++.+.+ +++....-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34444555566666666666666654322 45555555566666666666666666666655554
No 267
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.05 E-value=38 Score=36.87 Aligned_cols=121 Identities=7% Similarity=0.039 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHH
Q 006615 67 LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHN--QSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLM 144 (638)
Q Consensus 67 ~~~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll 144 (638)
.+...-+..+.+...++-|+.+-+.-. ..++ .........-|.+.|++++|...|-+-... +.|. .++
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~~----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi 404 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQH----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVI 404 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHH
Confidence 344456777777777887777655432 2222 112222333345677787777666443321 1222 245
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 006615 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQV 198 (638)
Q Consensus 145 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 198 (638)
.-|....+...--..++.+.+.|+. +...-..|+.+|.+.++.++-.++.+..
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 5555555556666666777776643 3455566777777777766655555443
No 268
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=88.83 E-value=18 Score=32.80 Aligned_cols=223 Identities=17% Similarity=0.121 Sum_probs=147.9
Q ss_pred CCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCchHhHHHHHHHHHhcCCHHHHH
Q 006615 79 APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS-KFLNVSVNFMNLMQWYSTSGDLELVL 157 (638)
Q Consensus 79 ~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~A~ 157 (638)
.+....+...+...............+......+...+.+..+...+...... ........+......+...++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555566666665543211112456777777788888888888888777652 23445555667777788888889999
Q ss_pred HHHHHHHhcCCCCCHHhHHHHHH-HHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 006615 158 STWNEYRQRAKLLSTESYNIVMS-VYAKTGKNFEAVETFRQVIDEGA--IPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234 (638)
Q Consensus 158 ~l~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~--~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 234 (638)
..+.........+ ......... .+...|+++.|...|.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9998888754333 222333333 78889999999999999855211 1233444444455677889999999998887
Q ss_pred cCCCcc-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhC
Q 006615 235 LMRIKR-TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREML 303 (638)
Q Consensus 235 ~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 303 (638)
... .. ....+..+-..+...++++.|...+....................+...+..+.+...+....
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 642 22 366788888888888999999999988876543312233333344446777888888877764
No 269
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=88.71 E-value=20 Score=33.17 Aligned_cols=64 Identities=13% Similarity=0.060 Sum_probs=46.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 006615 520 GLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERC 599 (638)
Q Consensus 520 ~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 599 (638)
.+.+-|.+.|.+..|..-+++|.+. .+-+.. ....+-.+..+|.+.|..++|.+.-+-+
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~--------------------~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSA--------------------VREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccc--------------------hHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 4456788899999999999999886 322222 2334566888899999999999888776
Q ss_pred HHccC
Q 006615 600 EKIND 604 (638)
Q Consensus 600 ~~~~~ 604 (638)
..-.+
T Consensus 231 ~~N~p 235 (254)
T COG4105 231 GANYP 235 (254)
T ss_pred HhcCC
Confidence 65443
No 270
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.46 E-value=3.7 Score=38.73 Aligned_cols=78 Identities=18% Similarity=0.296 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHhhHHH
Q 006615 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ-----NGVEPDAYMFKV 555 (638)
Q Consensus 481 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~-----~~~~p~~~~~~~ 555 (638)
.++..++..+..+|+.+.+.+.++++.... +-|...|..+|.+|.+.|+...|...|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345555555555555555555555555542 22555555555555555555555555554433 455665555555
Q ss_pred HHHH
Q 006615 556 LIQA 559 (638)
Q Consensus 556 li~~ 559 (638)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5544
No 271
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.37 E-value=4.7 Score=38.01 Aligned_cols=92 Identities=17% Similarity=0.170 Sum_probs=48.6
Q ss_pred HHHHHcCCChhHHHHHHHHHHcCCC--CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhc
Q 006615 73 THALRSAPNADSALSIMEALKSNPN--FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS 150 (638)
Q Consensus 73 ~~~l~~~~~~~~Al~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~ 150 (638)
+.......+++.+...+-.++.++. ..|+. +-+++++.|.+ -+.+.+..++..-+.-|+-||..+++.+|+.+.+.
T Consensus 71 V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~ 148 (418)
T KOG4570|consen 71 VDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKK 148 (418)
T ss_pred hhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHHHHHHHHhc
Confidence 3333444556666666666654321 12221 23334443332 34445555655556666666666666666666666
Q ss_pred CCHHHHHHHHHHHHhc
Q 006615 151 GDLELVLSTWNEYRQR 166 (638)
Q Consensus 151 g~~~~A~~l~~~m~~~ 166 (638)
+++.+|..+.-.|...
T Consensus 149 ~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 149 ENYKDAASVVTEVMMQ 164 (418)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 6666666665555544
No 272
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.31 E-value=5 Score=30.53 Aligned_cols=75 Identities=8% Similarity=0.181 Sum_probs=57.0
Q ss_pred ChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCC
Q 006615 495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM 570 (638)
Q Consensus 495 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~ 570 (638)
+.-++.+-++.+....+.|+.....+-++||.+..++..|.++|+-.+.+ ...+...|..+++-.--.+.+.|+.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqeikp~l~ELGI~ 96 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQEIKPTLKELGIS 96 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHHHhHHHHHHCCC
Confidence 33456666777777888999999999999999999999999999988853 2235557777776665556666653
No 273
>PRK11906 transcriptional regulator; Provisional
Probab=88.21 E-value=20 Score=36.28 Aligned_cols=147 Identities=10% Similarity=-0.028 Sum_probs=97.1
Q ss_pred ChhHHHHHHHHHhcCCCCcCCHH-HHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccc
Q 006615 385 SPETAWHFFCWVAYQPGYTHDVY-ALEKMLTILAR---------HGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGIS 454 (638)
Q Consensus 385 ~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~---------~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~ 454 (638)
+.+.|+.+|.+........|+-. .|..+..++.. ..+..+|.++-++..+.+.. |......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence 45568888888875555666543 34433333322 12345677777777776644 777777777777888
Q ss_pred CCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcch---hhHHHHHHHHHccCCH
Q 006615 455 KKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV---QTFSGLMYHFALQGDE 531 (638)
Q Consensus 455 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~li~~~~~~g~~ 531 (638)
++++.|..+|++.... .||.+.+|......+.-+|+.++|.+.+++..+. .|.. ...-..+..|+..+ +
T Consensus 352 ~~~~~a~~~f~rA~~L-----~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~ 423 (458)
T PRK11906 352 GQAKVSHILFEQAKIH-----STDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-L 423 (458)
T ss_pred cchhhHHHHHHHHhhc-----CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-h
Confidence 8899999999998765 6666677777777778899999999999986653 3432 23333344666544 5
Q ss_pred HHHHHHHHH
Q 006615 532 KIVQKLFSM 540 (638)
Q Consensus 532 ~~a~~l~~~ 540 (638)
++|..++-+
T Consensus 424 ~~~~~~~~~ 432 (458)
T PRK11906 424 KNNIKLYYK 432 (458)
T ss_pred hhhHHHHhh
Confidence 777776643
No 274
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=88.02 E-value=29 Score=34.18 Aligned_cols=209 Identities=15% Similarity=0.090 Sum_probs=107.8
Q ss_pred hhHHHHHHHHHHcCCCCCCChhHHHHHHHHH--HhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHH--HHhcCCHHHHH
Q 006615 82 ADSALSIMEALKSNPNFSHNQSTLHALATVL--AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQW--YSTSGDLELVL 157 (638)
Q Consensus 82 ~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~A~ 157 (638)
+..+...|+.-++.. .|..|-..+ ...|+-..|++.-.+-.+. +..|..-...|+.+ -.-.|+.+.|.
T Consensus 69 P~t~~Ryfr~rKRdr-------gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar 140 (531)
T COG3898 69 PYTARRYFRERKRDR-------GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDAR 140 (531)
T ss_pred cHHHHHHHHHHHhhh-------HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHH
Confidence 344445555444333 344444444 2356666666665443211 11222223333332 23457888888
Q ss_pred HHHHHHHhcCCCCCHH--hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 006615 158 STWNEYRQRAKLLSTE--SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALP 234 (638)
Q Consensus 158 ~l~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 234 (638)
+-|+.|... |... -...|.-.--+.|..+.|...-++.-.. .| -......++...|..|+++.|.++++.-.
T Consensus 141 ~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 141 KKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred HHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 888877643 1111 1222222334567777777666665553 23 34566677777888888888888877655
Q ss_pred c-CCCccCHhH--HHHHHHHHHc---cCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHcCChHHHHHHHHHhCcC
Q 006615 235 L-MRIKRTSKQ--YLILVEGFVG---VERFDEAKSLLNEMRDDGKFPGRAM--RVALERMQEMGFIQGANEFLREMLPD 305 (638)
Q Consensus 235 ~-~g~~p~~~~--~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~ 305 (638)
+ .-+++|..- -..|+.+-.. .-+...|...-.+.. .+.||.+- ...-.++.+.|+..++-.+++.+.+.
T Consensus 216 ~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 216 AAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred HHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc
Confidence 4 223444422 2233322211 233445554444333 34444432 23346677788888887777777544
No 275
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.80 E-value=22 Score=32.57 Aligned_cols=201 Identities=15% Similarity=0.154 Sum_probs=101.6
Q ss_pred HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG 151 (638)
Q Consensus 72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g 151 (638)
...++..+.+++.|-..+....+. ..-+...|++ ...++.|--+.+++.+. +--+..|+--...|..+|
T Consensus 37 AAvafRnAk~feKakdcLlkA~~~--yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 37 AAVAFRNAKKFEKAKDCLLKASKG--YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHH--HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhC
Confidence 455677777788777766666521 1112222322 12244454555555442 222334566667788888
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHcCCHHHH
Q 006615 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE-----GAIPNSRTYTVMIEHLVNLGKLDSA 226 (638)
Q Consensus 152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~ty~~li~~~~~~g~~~~A 226 (638)
..+.|-..+++.-+. .++-++++|+++|.+-..- ....-..-|..+-+.+.+...+++|
T Consensus 106 spdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred CcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence 887777666654321 1223344444444443221 0001112233344556666666666
Q ss_pred HHHHHhcccCCC----ccCH-hHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC---CHHHH-HHHHHHHHcCChHHHHH
Q 006615 227 LEVFSALPLMRI----KRTS-KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP---GRAMR-VALERMQEMGFIQGANE 297 (638)
Q Consensus 227 ~~~~~~m~~~g~----~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~~~-~ll~~~~~~g~~~~a~~ 297 (638)
-..|.+-..... -++. ..|-+.|-.+....++..|.+.+++--+.+-.- +..+. .+|.+ ...|+.+++..
T Consensus 170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a-yd~gD~E~~~k 248 (308)
T KOG1585|consen 170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA-YDEGDIEEIKK 248 (308)
T ss_pred HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH-hccCCHHHHHH
Confidence 555543221100 1111 235556667777788888888888754433222 22333 44444 45677777766
Q ss_pred HHH
Q 006615 298 FLR 300 (638)
Q Consensus 298 ~~~ 300 (638)
+..
T Consensus 249 vl~ 251 (308)
T KOG1585|consen 249 VLS 251 (308)
T ss_pred HHc
Confidence 653
No 276
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.52 E-value=1.3 Score=26.73 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 006615 175 YNIVMSVYAKTGKNFEAVETFRQV 198 (638)
Q Consensus 175 ~~~li~~~~~~g~~~~A~~~~~~m 198 (638)
|+.|...|.+.|++++|.++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455556666666666666666653
No 277
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=87.51 E-value=22 Score=34.55 Aligned_cols=91 Identities=15% Similarity=0.053 Sum_probs=58.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCCC-----ccCHhHHHHHHHHHHccCCHHHHHHHHHHH----HhCCCCCCHHH---
Q 006615 212 VMIEHLVNLGKLDSALEVFSALPLMRI-----KRTSKQYLILVEGFVGVERFDEAKSLLNEM----RDDGKFPGRAM--- 279 (638)
Q Consensus 212 ~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p~~~~--- 279 (638)
++-.++...+.++++.+.|+...+..- .....+|-.|-..|.+..|+++|.-+..+. ...++.....-
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 455666666777777777776543110 112356888888889989988887665544 33444444332
Q ss_pred ---HHHHHHHHHcCChHHHHHHHHHh
Q 006615 280 ---RVALERMQEMGFIQGANEFLREM 302 (638)
Q Consensus 280 ---~~ll~~~~~~g~~~~a~~~~~~~ 302 (638)
|.+-.++...|++..|.+..++.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea 232 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEA 232 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHH
Confidence 34456778888888888887765
No 278
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.95 E-value=62 Score=36.90 Aligned_cols=95 Identities=17% Similarity=0.182 Sum_probs=58.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhH----HHHHHHHHHccCCHHHH
Q 006615 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQ----YLILVEGFVGVERFDEA 261 (638)
Q Consensus 186 g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----~~~li~~~~~~g~~~~A 261 (638)
+++++|+.-+.++. ...|.-.++.--+.|.+.+|..++ .|+... |.+..+-+.....+++|
T Consensus 894 ~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~A 958 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEA 958 (1265)
T ss_pred HHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHH
Confidence 45666766665553 223445555556677788887765 344444 34444444556777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhC
Q 006615 262 KSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREML 303 (638)
Q Consensus 262 ~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 303 (638)
--.|+..-+ +-..+.+|...|+|.+|..+-.++.
T Consensus 959 al~Ye~~Gk--------lekAl~a~~~~~dWr~~l~~a~ql~ 992 (1265)
T KOG1920|consen 959 ALMYERCGK--------LEKALKAYKECGDWREALSLAAQLS 992 (1265)
T ss_pred HHHHHHhcc--------HHHHHHHHHHhccHHHHHHHHHhhc
Confidence 777765522 1235777788888888888877764
No 279
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.86 E-value=10 Score=39.32 Aligned_cols=132 Identities=13% Similarity=0.055 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHH
Q 006615 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183 (638)
Q Consensus 104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 183 (638)
.-+.++..+.+.|..++|+.+- +|.. .-.....+.|+++.|.++..+.. +..-|..|-++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d---~rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDPD---QRFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CChh---hhhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 4556777777777777666542 2322 12334457788888877765543 2556888888888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHH
Q 006615 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263 (638)
Q Consensus 184 ~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 263 (638)
..+++..|.+.|..... |..|+-.+...|+.+....+-....+.|. .|.-.-+|...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHH
Confidence 88888888888876654 55667777777777766555555555542 2333446667788888887
Q ss_pred HHHHH
Q 006615 264 LLNEM 268 (638)
Q Consensus 264 l~~~m 268 (638)
++.+-
T Consensus 743 lLi~t 747 (794)
T KOG0276|consen 743 LLIST 747 (794)
T ss_pred HHHhc
Confidence 77553
No 280
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.85 E-value=21 Score=40.28 Aligned_cols=134 Identities=16% Similarity=0.109 Sum_probs=86.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHh----HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006615 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTES----YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218 (638)
Q Consensus 143 ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~ 218 (638)
.++.--+.|-+++|+.++ .|+... |.+..+-+.+.+.+++|.-+|+..-+ ..--+.+|-
T Consensus 914 ~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~ 976 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYK 976 (1265)
T ss_pred HHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHH
Confidence 334334555555555544 344444 44444555567788888877776543 234567888
Q ss_pred HcCCHHHHHHHHHhcccCCCccCHhH--HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHH
Q 006615 219 NLGKLDSALEVFSALPLMRIKRTSKQ--YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGAN 296 (638)
Q Consensus 219 ~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~ 296 (638)
.+|++.+|..+..++.. ..|... --.|+.-+...++.-+|-++..+..+. |. ..+..+++...|++|.
T Consensus 977 ~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~----~av~ll~ka~~~~eAl 1046 (1265)
T KOG1920|consen 977 ECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---PE----EAVALLCKAKEWEEAL 1046 (1265)
T ss_pred HhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---HH----HHHHHHhhHhHHHHHH
Confidence 89999999998888763 223332 256778888888888888888776542 11 2455677788888888
Q ss_pred HHHHHhC
Q 006615 297 EFLREML 303 (638)
Q Consensus 297 ~~~~~~~ 303 (638)
++...-.
T Consensus 1047 rva~~~~ 1053 (1265)
T KOG1920|consen 1047 RVASKAK 1053 (1265)
T ss_pred HHHHhcc
Confidence 8765543
No 281
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.38 E-value=4.7 Score=31.03 Aligned_cols=60 Identities=10% Similarity=0.139 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 006615 120 ELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS 180 (638)
Q Consensus 120 ~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~ 180 (638)
+.++-++.+....+.|++.+..+.+++|-+.+++..|.++|+.++.+ +.+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 45555666666666777777777777777777777777777766654 2222335665554
No 282
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=86.15 E-value=15 Score=30.59 Aligned_cols=76 Identities=17% Similarity=0.107 Sum_probs=40.8
Q ss_pred HHHcCCChhHHHHHHHHHHcCCCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhc
Q 006615 75 ALRSAPNADSALSIMEALKSNPNFSH-NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS 150 (638)
Q Consensus 75 ~l~~~~~~~~Al~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~ 150 (638)
...+.|++++|.+.|+.+..+-++.+ ....--.++.++.+.+++++|...++++++........-|...+.+++..
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 34456677777777777665433322 23344556666666677777777666666533221122244445554433
No 283
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.11 E-value=6 Score=30.14 Aligned_cols=61 Identities=10% Similarity=0.166 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 006615 119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS 180 (638)
Q Consensus 119 ~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~ 180 (638)
-++++-++.+......|++.+..+-+++|-+.+++..|.++|+..+.+- ..+...|..+++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 3455555666666666766667777777777777777777777665431 123445555543
No 284
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.23 E-value=11 Score=39.02 Aligned_cols=130 Identities=17% Similarity=0.161 Sum_probs=90.2
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhc
Q 006615 71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS 150 (638)
Q Consensus 71 ~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~ 150 (638)
-+.+-+.+.|..++|+++ .+|+.. -.....+.|+++.|.++..+.. +..-|..|-++..+.
T Consensus 619 ~va~Fle~~g~~e~AL~~----------s~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~ 679 (794)
T KOG0276|consen 619 KVAHFLESQGMKEQALEL----------STDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSA 679 (794)
T ss_pred hHHhHhhhccchHhhhhc----------CCChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhc
Confidence 356667777777777654 222211 1223456788888888765433 345589999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006615 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230 (638)
Q Consensus 151 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~ 230 (638)
|++..|.+.|.+... |..|+-.+...|+-+....+=...++.|.. |.-.-+|...|+++++.+++
T Consensus 680 ~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 680 GELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELL 744 (794)
T ss_pred ccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHH
Confidence 999999999876543 566777888888877666666666666642 34445677789999999888
Q ss_pred Hhcc
Q 006615 231 SALP 234 (638)
Q Consensus 231 ~~m~ 234 (638)
..-.
T Consensus 745 i~t~ 748 (794)
T KOG0276|consen 745 ISTQ 748 (794)
T ss_pred HhcC
Confidence 7654
No 285
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=85.10 E-value=32 Score=32.52 Aligned_cols=140 Identities=8% Similarity=0.112 Sum_probs=97.3
Q ss_pred cCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHh--cCChHHHHHHHHHHHh-CCCCCchHhHHHHHHHHHhcCCHH
Q 006615 78 SAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAK--SQRNHELKTLIGDISS-SKFLNVSVNFMNLMQWYSTSGDLE 154 (638)
Q Consensus 78 ~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~l~~~~~~-~~~~~~~~~~~~ll~~~~~~g~~~ 154 (638)
+..-..+|+.+|+.......+..|..+...+++.... ........++.+.+.. .+..++..+-..+++.+++.+++.
T Consensus 140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 3445678899998554323466777788888888765 2244445555555553 345667777888999999999999
Q ss_pred HHHHHHHHHHhc-CCCCCHHhHHHHHHHHHhcCChHHHHHHHHH-----HHHcCCCCCHHHHHHHHHHH
Q 006615 155 LVLSTWNEYRQR-AKLLSTESYNIVMSVYAKTGKNFEAVETFRQ-----VIDEGAIPNSRTYTVMIEHL 217 (638)
Q Consensus 155 ~A~~l~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~g~~p~~~ty~~li~~~ 217 (638)
.-.++++.-... +..-|...|..+|+...+.|+..-...+.++ +++.|+..+...-..+-..+
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 999999887665 5556788899999999999998776666554 23445666665555554443
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.03 E-value=23 Score=30.20 Aligned_cols=52 Identities=17% Similarity=0.048 Sum_probs=26.2
Q ss_pred ccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 006615 453 ISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS 509 (638)
Q Consensus 453 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 509 (638)
+.++.+++..+++.++-..+..+. ..++.. ..+.+.|++.+|+++|+++.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e---~~~~~~--~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPE---LDLFDG--WLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchH---HHHHHH--HHHHHhCCHHHHHHHHHHHhcc
Confidence 445566666666655544222211 122222 2345666666666666666554
No 287
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.01 E-value=2.5 Score=24.92 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615 574 ATKELLKKSLWKEGRRKEAAAVEERCEKIND 604 (638)
Q Consensus 574 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 604 (638)
.+|..+..++...|++++|++.+++..+.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 5688899999999999999999999998764
No 288
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.86 E-value=5.7 Score=30.60 Aligned_cols=71 Identities=8% Similarity=0.164 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCC
Q 006615 498 DAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNL 569 (638)
Q Consensus 498 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~ 569 (638)
+..+-++.+....+.|+.....+.++||.+..++..|.++|+-++.+ ..+....|..+++-.--.+.+.||
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqElkPtl~ELGI 98 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQELKPTLEELGI 98 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHHHhhHHHHhCC
Confidence 45566666777788999999999999999999999999999988864 233333777776655544555554
No 289
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.15 E-value=2.8 Score=24.56 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615 574 ATKELLKKSLWKEGRRKEAAAVEERCEKIND 604 (638)
Q Consensus 574 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 604 (638)
..|..+...+.+.|++++|++.+++..+..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 4577889999999999999999999988764
No 290
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.57 E-value=72 Score=34.71 Aligned_cols=160 Identities=14% Similarity=0.123 Sum_probs=91.5
Q ss_pred HHHHHH-cCCChhHHHHHHHHHHcCCCCCCChh-----HHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCchHhHH
Q 006615 72 VTHALR-SAPNADSALSIMEALKSNPNFSHNQS-----TLHALATVLAKSQRNHELKTLIGDISS----SKFLNVSVNFM 141 (638)
Q Consensus 72 ~~~~l~-~~~~~~~Al~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~~~~~~a~~l~~~~~~----~~~~~~~~~~~ 141 (638)
+...|. ...+++.|...+++...... +++.. .-..+++.+.+.+... |...+++..+ .+..+-...|.
T Consensus 65 la~iL~~eT~n~~~Ae~~L~k~~~l~~-~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~fr 142 (608)
T PF10345_consen 65 LASILLEETENLDLAETYLEKAILLCE-RHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFR 142 (608)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHH
Confidence 344444 66789999999987753211 12211 1233455555555444 8887777553 22223333444
Q ss_pred HH-HHHHHhcCCHHHHHHHHHHHHhcC---CCCCHHhHHHHHHHHH--hcCChHHHHHHHHHHHHcCC---------CCC
Q 006615 142 NL-MQWYSTSGDLELVLSTWNEYRQRA---KLLSTESYNIVMSVYA--KTGKNFEAVETFRQVIDEGA---------IPN 206 (638)
Q Consensus 142 ~l-l~~~~~~g~~~~A~~l~~~m~~~~---~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~---------~p~ 206 (638)
-+ +..+...++...|.+.++.+...- ..|-+..+-.++.+.. +.+..+++.+.++++..... .|-
T Consensus 143 ll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~q 222 (608)
T PF10345_consen 143 LLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQ 222 (608)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHH
Confidence 44 333334479999999988776432 2344555556665544 45666778888877744221 235
Q ss_pred HHHHHHHHHHHH--HcCCHHHHHHHHHhc
Q 006615 207 SRTYTVMIEHLV--NLGKLDSALEVFSAL 233 (638)
Q Consensus 207 ~~ty~~li~~~~--~~g~~~~A~~~~~~m 233 (638)
..+|..+++.++ ..|+++.+...++++
T Consensus 223 L~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 223 LKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 667777777655 567766666655543
No 291
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.36 E-value=2.6 Score=26.14 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615 573 AATKELLKKSLWKEGRRKEAAAVEERCEKIND 604 (638)
Q Consensus 573 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 604 (638)
..+++.|...|...|++++|.+++++..+..-
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 35788999999999999999999999887543
No 292
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.11 E-value=54 Score=35.11 Aligned_cols=17 Identities=6% Similarity=-0.103 Sum_probs=9.5
Q ss_pred hcCChHHHHHHHHHHHh
Q 006615 114 KSQRNHELKTLIGDISS 130 (638)
Q Consensus 114 ~~~~~~~a~~l~~~~~~ 130 (638)
...+.+.|...++...+
T Consensus 261 ~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAE 277 (552)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 44556666666655544
No 293
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.98 E-value=42 Score=30.85 Aligned_cols=117 Identities=17% Similarity=0.110 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHc
Q 006615 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254 (638)
Q Consensus 175 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 254 (638)
|.---.+|-...++++|...+.+..+. .+-|..-|.. ...++.|--+.++|.+. .--+.-|+--...|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 444445566667777777766655431 2222222211 22345555555555432 1112335566667777
Q ss_pred cCCHHHHHHHHHHHHh--CCCCCCHHH--H-HHHHHHHHcCChHHHHHHHHH
Q 006615 255 VERFDEAKSLLNEMRD--DGKFPGRAM--R-VALERMQEMGFIQGANEFLRE 301 (638)
Q Consensus 255 ~g~~~~A~~l~~~m~~--~g~~p~~~~--~-~ll~~~~~~g~~~~a~~~~~~ 301 (638)
+|..+.|-..+++.-+ .++.|+... | ..+......++...|.+++..
T Consensus 104 ~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk 155 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK 155 (308)
T ss_pred hCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 7777777666665522 345555432 3 334444444555555555443
No 294
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=81.14 E-value=41 Score=30.26 Aligned_cols=200 Identities=16% Similarity=0.113 Sum_probs=140.0
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHH-HHHh
Q 006615 71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQ-WYST 149 (638)
Q Consensus 71 ~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~-~~~~ 149 (638)
.....+...+.+..+...+...............+..........+....+...+.........+. ........ .+..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 142 (291)
T COG0457 64 LLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGALYE 142 (291)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHHHHH
Confidence 356677788899999998888774211233444666677777788888999999988887543331 22223333 7889
Q ss_pred cCCHHHHHHHHHHHHhcCC--CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006615 150 SGDLELVLSTWNEYRQRAK--LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227 (638)
Q Consensus 150 ~g~~~~A~~l~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 227 (638)
.|+++.|...|++...... ......+......+...++.+.+...+..............+..+-..+...++.+.|.
T Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 222 (291)
T COG0457 143 LGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEAL 222 (291)
T ss_pred cCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHH
Confidence 9999999999999865321 12344445555557788999999999999988522113677888888899999999999
Q ss_pred HHHHhcccCCCccC-HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006615 228 EVFSALPLMRIKRT-SKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273 (638)
Q Consensus 228 ~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 273 (638)
..+...... .|+ ...+..+...+...+..+++...+.+......
T Consensus 223 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 223 EYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred HHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 999988764 233 34445455555577789999988888766543
No 295
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.54 E-value=27 Score=32.68 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=9.7
Q ss_pred HHHHHHccCCHHHHHHHH
Q 006615 521 LMYHFALQGDEKIVQKLF 538 (638)
Q Consensus 521 li~~~~~~g~~~~a~~l~ 538 (638)
+|..+-+.|.+.+|+.+.
T Consensus 131 li~l~y~~~~YsdalalI 148 (421)
T COG5159 131 LIYLLYKTGKYSDALALI 148 (421)
T ss_pred HHHHHHhcccHHHHHHHH
Confidence 445555556665555543
No 296
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=80.04 E-value=35 Score=28.67 Aligned_cols=81 Identities=10% Similarity=0.193 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----CCCHHhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006615 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAK-----LLSTESYNIVMSVYAKTGK-NFEAVETFRQVIDEGAIPNSRTYTVM 213 (638)
Q Consensus 140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~-----~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~ty~~l 213 (638)
.|+++.-....+++...+.+++.+..... ..+..+|++++.+..+..- --.+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 56667666677777777777766632210 1234567777777755554 33456667777766677777777777
Q ss_pred HHHHHHc
Q 006615 214 IEHLVNL 220 (638)
Q Consensus 214 i~~~~~~ 220 (638)
|+++.+-
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7766543
No 297
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=79.89 E-value=39 Score=29.22 Aligned_cols=130 Identities=11% Similarity=0.049 Sum_probs=67.9
Q ss_pred HHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 006615 125 IGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204 (638)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 204 (638)
++.+.+.+++|+...+..+++.+.+.|++..... +.+.++-+|.......+-.+.. ....+.++=-+|.++
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR--- 87 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR--- 87 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH---
Confidence 3444556677777777777777777777554433 3334444554444444433322 223333333333332
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 006615 205 PNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268 (638)
Q Consensus 205 p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 268 (638)
=...+..++..+...|++-+|.++.+.... .+......++.+..+.+|..-=..+|+-.
T Consensus 88 -L~~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 88 -LGTAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred -hhhhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 001355666677777777777777766432 12222344566666666655444444433
No 298
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=79.78 E-value=1.7 Score=25.88 Aligned_cols=25 Identities=16% Similarity=-0.003 Sum_probs=16.6
Q ss_pred chhHHHHHHHHHHHHHccCChHHHH
Q 006615 476 KFKLMLLYSSLLRTLTKCKRDFDAI 500 (638)
Q Consensus 476 ~~~~~~~~~~li~~~~~~g~~~~A~ 500 (638)
.|+.+.+|+.+...|...|+.++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4555566777777777777777664
No 299
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.63 E-value=1e+02 Score=33.84 Aligned_cols=36 Identities=19% Similarity=0.047 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHhccCcHH----HHHHHHHHHHHccCCCC
Q 006615 572 DAATKELLKKSLWKEGRRK----EAAAVEERCEKINDVPS 607 (638)
Q Consensus 572 ~~~~~~~li~~~~~~g~~~----~A~~~~~~~~~~~~~~~ 607 (638)
++..|..+++.+++.+.++ ...++++.+......||
T Consensus 735 ~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ipp 774 (933)
T KOG2114|consen 735 DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPP 774 (933)
T ss_pred ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCH
Confidence 7888999999999888544 45555666555555444
No 300
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=79.47 E-value=4.7 Score=23.65 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 006615 175 YNIVMSVYAKTGKNFEAVETFRQVID 200 (638)
Q Consensus 175 ~~~li~~~~~~g~~~~A~~~~~~m~~ 200 (638)
|..+...|...|++++|+..|++..+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 44444444444444444444444443
No 301
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=79.30 E-value=2.6 Score=25.06 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=8.3
Q ss_pred HHhHHHHHHHHHhcCChHHH
Q 006615 172 TESYNIVMSVYAKTGKNFEA 191 (638)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~A 191 (638)
..+|+.+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33444444444444444433
No 302
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=78.99 E-value=60 Score=30.80 Aligned_cols=136 Identities=7% Similarity=0.094 Sum_probs=92.4
Q ss_pred hcCCHHHHHHHHHHHHh-cCCCCCHHhHHHHHHHHHhc-C-ChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHH
Q 006615 149 TSGDLELVLSTWNEYRQ-RAKLLSTESYNIVMSVYAKT-G-KNFEAVETFRQVIDE-GAIPNSRTYTVMIEHLVNLGKLD 224 (638)
Q Consensus 149 ~~g~~~~A~~l~~~m~~-~~~~p~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~ 224 (638)
+...+.+|+.+|+...- ..+--|...-..+++..... + ....-.++.+-+... |-.++..+...+|..+++.+++.
T Consensus 140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 33455677777773322 23445677777777777662 2 223333444444432 56788889999999999999999
Q ss_pred HHHHHHHhcccC-CCccCHhHHHHHHHHHHccCCHHHHHHHHHH-----HHhCCCCCCHHHHHHHH
Q 006615 225 SALEVFSALPLM-RIKRTSKQYLILVEGFVGVERFDEAKSLLNE-----MRDDGKFPGRAMRVALE 284 (638)
Q Consensus 225 ~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~-----m~~~g~~p~~~~~~ll~ 284 (638)
+-.++++..... +..-|...|..+|....+.|+..-...+.++ +++.|+..+......|.
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~ 285 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLS 285 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHH
Confidence 999999877654 5566888999999999999998877776654 24555665555544443
No 303
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=78.86 E-value=83 Score=32.36 Aligned_cols=75 Identities=9% Similarity=0.083 Sum_probs=47.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHH
Q 006615 411 KMLTILARHGHVELVDRLIAKLRSDGMRL-PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLR 488 (638)
Q Consensus 411 ~li~~~~~~g~~~~a~~l~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~ 488 (638)
.+..++-+.|+.++|.+.+++|.+..... +......|+.++...+.+.++..++.+-.+.. .++.. ...|+..+-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~--lpkSA-ti~YTaALL 339 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS--LPKSA-TICYTAALL 339 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc--CCchH-HHHHHHHHH
Confidence 45556667788888888888887554332 33466677888888888888888887743221 11222 366776543
No 304
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.72 E-value=21 Score=31.52 Aligned_cols=93 Identities=13% Similarity=0.074 Sum_probs=71.5
Q ss_pred HHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcc-hhhHHHHHHHHHcc
Q 006615 450 FYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD-VQTFSGLMYHFALQ 528 (638)
Q Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~ 528 (638)
-+.+.|++++|..-|......++..+.....+.|..-..++.+.+..+.|+.-....++.+ |+ .....--..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhh
Confidence 3567899999999999998888776665555778888889999999999998888888753 32 22222224478888
Q ss_pred CCHHHHHHHHHHHHhC
Q 006615 529 GDEKIVQKLFSMVRQN 544 (638)
Q Consensus 529 g~~~~a~~l~~~m~~~ 544 (638)
..+++|++=|+.+...
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 8999999999998875
No 305
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.40 E-value=5.3 Score=24.68 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=15.5
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006615 173 ESYNIVMSVYAKTGKNFEAVETFRQVID 200 (638)
Q Consensus 173 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 200 (638)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3555556666666666666666555543
No 306
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.40 E-value=39 Score=28.39 Aligned_cols=51 Identities=18% Similarity=0.156 Sum_probs=26.1
Q ss_pred cCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 006615 454 SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS 509 (638)
Q Consensus 454 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 509 (638)
.++.+++..+++.++-..+..... .++... .+...|++.+|.++|++..+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~---d~~dg~--l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKEL---DMFDGW--LLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCcccc---chhHHH--HHHHcCCHHHHHHHHHhhhcc
Confidence 555666666666555443222221 222222 245566666666666666654
No 307
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.99 E-value=18 Score=32.43 Aligned_cols=76 Identities=7% Similarity=0.051 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHH
Q 006615 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE--GAIPNSRTYTVMIEH 216 (638)
Q Consensus 140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~ty~~li~~ 216 (638)
.+..++.+.+.+.+++|+.+.+.=.+.+ +.|..+-..+++.+|-.|++++|..-++-.-.. ...+...+|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445667777888888888877666554 456677778888888888888888777665542 223445667666663
No 308
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.94 E-value=0.97 Score=38.20 Aligned_cols=84 Identities=15% Similarity=0.189 Sum_probs=40.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCC
Q 006615 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257 (638)
Q Consensus 178 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 257 (638)
+|..+.+.+.++....+++.+...+..-+....+.++..|++.++.++..++++.... .-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcch
Confidence 3444444555555555555555544334455555555555555555555555442111 222334455555555
Q ss_pred HHHHHHHHHHH
Q 006615 258 FDEAKSLLNEM 268 (638)
Q Consensus 258 ~~~A~~l~~~m 268 (638)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555555544
No 309
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=77.79 E-value=41 Score=28.25 Aligned_cols=82 Identities=17% Similarity=0.286 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCC-----CcchhhHHHHHHHHHccCC-HHHHHHHHHHHHhCCCCCCHhhHH
Q 006615 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGI-----VPDVQTFSGLMYHFALQGD-EKIVQKLFSMVRQNGVEPDAYMFK 554 (638)
Q Consensus 481 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----~p~~~t~~~li~~~~~~g~-~~~a~~l~~~m~~~~~~p~~~~~~ 554 (638)
...|+++.-....+......++++.+..... .-+..+|.+++.+.++..- ---+..+|..|++.+.+++..-|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 5667788877778888888877777743210 2355678899999877766 456778888888888888888888
Q ss_pred HHHHHHHH
Q 006615 555 VLIQAYCK 562 (638)
Q Consensus 555 ~li~~~~~ 562 (638)
.+|.++.+
T Consensus 120 ~li~~~l~ 127 (145)
T PF13762_consen 120 CLIKAALR 127 (145)
T ss_pred HHHHHHHc
Confidence 88887765
No 310
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.23 E-value=6.1 Score=23.12 Aligned_cols=31 Identities=23% Similarity=0.089 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615 574 ATKELLKKSLWKEGRRKEAAAVEERCEKIND 604 (638)
Q Consensus 574 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 604 (638)
.+|..+...|...|++++|.+.|++..+.+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4677888999999999999999999888653
No 311
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.59 E-value=30 Score=30.78 Aligned_cols=78 Identities=13% Similarity=0.155 Sum_probs=48.0
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCHH
Q 006615 148 STSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE---GAIPNSRTYTVMIEHLVNLGKLD 224 (638)
Q Consensus 148 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~ty~~li~~~~~~g~~~ 224 (638)
.+.|+ +.|+..|-.+...+.--++..--.|..-|. ..+.+++..++.+..+. +-.+|+..+..|.+.+-+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 33344 566677766766665545555555555554 46677777777666652 33566777777777777777776
Q ss_pred HHH
Q 006615 225 SAL 227 (638)
Q Consensus 225 ~A~ 227 (638)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 663
No 312
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=75.13 E-value=7.3 Score=22.66 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=9.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 006615 177 IVMSVYAKTGKNFEAVETFRQVI 199 (638)
Q Consensus 177 ~li~~~~~~g~~~~A~~~~~~m~ 199 (638)
.+-..+.+.|++++|.+.|++..
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 33344444444444444444443
No 313
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=74.59 E-value=90 Score=30.59 Aligned_cols=131 Identities=14% Similarity=0.011 Sum_probs=81.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHH
Q 006615 410 EKMLTILARHGHVELVDRLIAKLRSDG-----MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS 484 (638)
Q Consensus 410 ~~li~~~~~~g~~~~a~~l~~~m~~~g-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 484 (638)
-+|-.++...+.++++++.|+.....- ......++..|-..|++..++++|.-+.....+......-.+.-.-|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 345566677778889988888765321 112335677888888888898888766665443322221111112232
Q ss_pred -----HHHHHHHccCChHHHHHHHHHHHh----CCCCcc-hhhHHHHHHHHHccCCHHHHHHHHHH
Q 006615 485 -----SLLRTLTKCKRDFDAINVLEEMIF----SGIVPD-VQTFSGLMYHFALQGDEKIVQKLFSM 540 (638)
Q Consensus 485 -----~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~ 540 (638)
.|-.++-..|+..+|.+.-++..+ .|-+|- ......+.+.|...|+.+.|..-|+.
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 244567778888888888877644 342221 23445666778888999888777764
No 314
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.31 E-value=1.3e+02 Score=32.28 Aligned_cols=179 Identities=11% Similarity=0.027 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHHhCCCCCchHh-HHHHHHH-HHhcCCHHHHHHHHHHHHh-------cCCCCCHHhHHHHHHHHHhcC--
Q 006615 118 NHELKTLIGDISSSKFLNVSVN-FMNLMQW-YSTSGDLELVLSTWNEYRQ-------RAKLLSTESYNIVMSVYAKTG-- 186 (638)
Q Consensus 118 ~~~a~~l~~~~~~~~~~~~~~~-~~~ll~~-~~~~g~~~~A~~l~~~m~~-------~~~~p~~~~~~~li~~~~~~g-- 186 (638)
...+...++...+.|..-.... -.....+ +....+.+.|...|+.... .+ +....+-+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 4577888888777653222211 1122233 5566799999999998877 45 3446677777777743
Q ss_pred ---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHH--ccCCHHH
Q 006615 187 ---KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN-LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV--GVERFDE 260 (638)
Q Consensus 187 ---~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g~~~~ 260 (638)
+.+.|+.+|....+.|. |+...+-..+..... ..+...|.++|...-+.|. ++...+-+++.... -..+...
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHH
Confidence 67789999999888775 355444443333333 3567899999999988874 34433333332222 3467899
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHh
Q 006615 261 AKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREM 302 (638)
Q Consensus 261 A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~ 302 (638)
|..++.+....|..........+..+.. +..+.+.-.+..+
T Consensus 383 A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 383 AFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYL 423 (552)
T ss_pred HHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHH
Confidence 9999999999983333333455555555 6666666655544
No 315
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=73.86 E-value=93 Score=30.44 Aligned_cols=120 Identities=17% Similarity=0.142 Sum_probs=77.7
Q ss_pred HHHHHHHhcCC---hHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHH
Q 006615 177 IVMSVYAKTGK---NFEAVETFRQVIDEGA----IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV 249 (638)
Q Consensus 177 ~li~~~~~~g~---~~~A~~~~~~m~~~g~----~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 249 (638)
.++...| |+ .+.|.+.|++....+. ..+......++....+.|+.+....+++.... .++..-...++
T Consensus 134 ~~~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l 208 (324)
T PF11838_consen 134 LLLSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLL 208 (324)
T ss_dssp HHHHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHH
T ss_pred HHHHHhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHH
Confidence 3355555 43 4678888888887422 34666667777778888887776667666664 35677788899
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCh--HHHHHHHHH
Q 006615 250 EGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFI--QGANEFLRE 301 (638)
Q Consensus 250 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~--~~a~~~~~~ 301 (638)
.+++...+.+...++++.....+..+......++.++...+.. +.+++++..
T Consensus 209 ~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 209 SALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
Confidence 9999999999999999988886533333355666666645554 777777654
No 316
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=73.75 E-value=98 Score=30.65 Aligned_cols=54 Identities=17% Similarity=0.060 Sum_probs=32.2
Q ss_pred HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006615 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS 130 (638)
Q Consensus 72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~ 130 (638)
..++..+.|+++..-+....... -.++...+.++... +.++.+++...++....
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~---~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNE---DSPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccC---CChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 45777888888884444443332 12344444444443 77888888777766543
No 317
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=73.15 E-value=4.6 Score=22.17 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=19.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHH
Q 006615 575 TKELLKKSLWKEGRRKEAAAVEE 597 (638)
Q Consensus 575 ~~~~li~~~~~~g~~~~A~~~~~ 597 (638)
....+...+...|++++|+++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34567889999999999999886
No 318
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=73.11 E-value=64 Score=28.21 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006615 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGV 546 (638)
Q Consensus 497 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~ 546 (638)
++|.+.|+...+ ..|+..+|+.-+.... +|-++..++.+++.
T Consensus 97 ~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 97 EKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHHh
Confidence 445555555554 3688888888777653 36777777776654
No 319
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=73.09 E-value=8.9 Score=22.03 Aligned_cols=28 Identities=25% Similarity=0.146 Sum_probs=23.5
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615 577 ELLKKSLWKEGRRKEAAAVEERCEKIND 604 (638)
Q Consensus 577 ~~li~~~~~~g~~~~A~~~~~~~~~~~~ 604 (638)
-.+..++.+.|++++|.+.++++.+.-+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3467788899999999999999988654
No 320
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=72.66 E-value=71 Score=28.54 Aligned_cols=72 Identities=15% Similarity=0.111 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCCHHhHHHHHHHHHhcCChHHH
Q 006615 119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR---AKLLSTESYNIVMSVYAKTGKNFEA 191 (638)
Q Consensus 119 ~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A 191 (638)
+.|.+.|-.+...+...++.....|...|. ..+.+++..++-+..+. +-.+|...+.+|...+-+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 345555555555554455554444444444 44566666665554432 2245566666666666666666655
No 321
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.69 E-value=2e+02 Score=32.04 Aligned_cols=157 Identities=13% Similarity=0.165 Sum_probs=92.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC
Q 006615 107 ALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186 (638)
Q Consensus 107 ~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 186 (638)
++|..+.+.|..+-|....++=.. -......+|+++.|++.-..+- |..+|..|.....+.|
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~t------------RF~LaLe~gnle~ale~akkld------d~d~w~rLge~Al~qg 686 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDERT------------RFELALECGNLEVALEAAKKLD------DKDVWERLGEEALRQG 686 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcch------------heeeehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhc
Confidence 455556666666666554432111 1234567788888877665543 3668889998888889
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHH
Q 006615 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266 (638)
Q Consensus 187 ~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 266 (638)
+.+-|.-.|++.+. |+.|--.|.-.|+.++-.++-..... .-|..+. ...-.-.|++++=.++++
T Consensus 687 n~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~---r~D~~~~---~qnalYl~dv~ervkIl~ 751 (1202)
T KOG0292|consen 687 NHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEI---RNDATGQ---FQNALYLGDVKERVKILE 751 (1202)
T ss_pred chHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHh---hhhhHHH---HHHHHHhccHHHHHHHHH
Confidence 98888888887765 33333445556887777666554432 2232221 112222477777666665
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCc
Q 006615 267 EMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLP 304 (638)
Q Consensus 267 ~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 304 (638)
.. |..|- .+ ..-..+|.-++|.++.++..+
T Consensus 752 n~---g~~~l-ay----lta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 752 NG---GQLPL-AY----LTAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred hc---CcccH-HH----HHHhhcCcHHHHHHHHHhhcc
Confidence 43 33331 11 122356777888888887765
No 322
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=68.14 E-value=1.3e+02 Score=29.81 Aligned_cols=28 Identities=21% Similarity=0.013 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 006615 574 ATKELLKKSLWKEGRRKEAAAVEERCEK 601 (638)
Q Consensus 574 ~~~~~li~~~~~~g~~~~A~~~~~~~~~ 601 (638)
.+|..+...+.+.|.++.|...+.++.+
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~ 174 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQ 174 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhc
Confidence 3444444555555555555555555444
No 323
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=67.71 E-value=33 Score=32.31 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=50.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc-----cCCCccCHhHHH
Q 006615 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP-----LMRIKRTSKQYL 246 (638)
Q Consensus 174 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~ 246 (638)
+.+..-..|..+|.+.+|.++.++...-. +.+...+-.++..++..|+--.|.+-++.+. +.|+..|-.+++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 45566677888899999988888877742 2367777788888888888666666666553 246655554443
No 324
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=65.61 E-value=87 Score=26.83 Aligned_cols=51 Identities=12% Similarity=0.061 Sum_probs=23.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHhHHHH-HHHHHhcCChHHHHHHHHHHHHc
Q 006615 149 TSGDLELVLSTWNEYRQRAKLLSTESYNIV-MSVYAKTGKNFEAVETFRQVIDE 201 (638)
Q Consensus 149 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~ 201 (638)
+.++.+++..+++.+... .|.......+ ...+.+.|++.+|..+|+++...
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 445555666665555442 2322222111 12244555666666666665443
No 325
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=63.68 E-value=15 Score=23.46 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=11.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHh
Q 006615 522 MYHFALQGDEKIVQKLFSMVRQ 543 (638)
Q Consensus 522 i~~~~~~g~~~~a~~l~~~m~~ 543 (638)
..+|...|+.+.|.++++++..
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3445555555555555555543
No 326
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=62.86 E-value=39 Score=22.66 Aligned_cols=20 Identities=10% Similarity=-0.130 Sum_probs=9.2
Q ss_pred HHHccCChHHHHHHHHHHHh
Q 006615 489 TLTKCKRDFDAINVLEEMIF 508 (638)
Q Consensus 489 ~~~~~g~~~~A~~l~~~m~~ 508 (638)
++.+.|++++|.+..+.+.+
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 34444555555555444444
No 327
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=62.80 E-value=1.9e+02 Score=29.89 Aligned_cols=91 Identities=8% Similarity=0.097 Sum_probs=39.9
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHH
Q 006615 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252 (638)
Q Consensus 173 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 252 (638)
...-+++..+..+..+.-+..+..+|..-| -+...|-.++..|... .-+.-..+++++.+..+. |++.-..|..-|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 334445555555555555555555555422 3444555555555544 223334444444433221 233233333333
Q ss_pred HccCCHHHHHHHHHHH
Q 006615 253 VGVERFDEAKSLLNEM 268 (638)
Q Consensus 253 ~~~g~~~~A~~l~~~m 268 (638)
-+ ++...+..+|.+.
T Consensus 143 Ek-ik~sk~a~~f~Ka 157 (711)
T COG1747 143 EK-IKKSKAAEFFGKA 157 (711)
T ss_pred HH-hchhhHHHHHHHH
Confidence 33 4444444444444
No 328
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=62.26 E-value=16 Score=23.39 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=17.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC
Q 006615 143 LMQWYSTSGDLELVLSTWNEYRQRA 167 (638)
Q Consensus 143 ll~~~~~~g~~~~A~~l~~~m~~~~ 167 (638)
|.++|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5667777777777777777776544
No 329
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=61.69 E-value=50 Score=24.82 Aligned_cols=64 Identities=6% Similarity=-0.009 Sum_probs=33.7
Q ss_pred HHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHH
Q 006615 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191 (638)
Q Consensus 122 ~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 191 (638)
.++++.+.+.|+--.. -...+-.+-...|+.+.|.++++.+. +| ...|..++.++-..|.-.-|
T Consensus 22 ~~v~d~ll~~~ilT~~-d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLLTEE-DRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCCCHH-HHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 3455555555532221 12222222224466677777777776 55 45666666666666654444
No 330
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=61.42 E-value=9.2 Score=31.22 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=26.7
Q ss_pred HHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Q 006615 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHF 525 (638)
Q Consensus 490 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 525 (638)
+-+.|.-.+|..+|+.|.+.|-+||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34456778899999999999998886 77777654
No 331
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=60.39 E-value=22 Score=26.09 Aligned_cols=44 Identities=9% Similarity=-0.134 Sum_probs=18.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHcccCCHHHHH
Q 006615 418 RHGHVELVDRLIAKLRSDGMRLPF--STIRLIIDFYGISKKADAAL 461 (638)
Q Consensus 418 ~~g~~~~a~~l~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~ 461 (638)
..++-++|+..|....+.-..+.. .++..++++|+..|++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREML 63 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554443322211 23334444444444444433
No 332
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=59.93 E-value=99 Score=29.20 Aligned_cols=85 Identities=19% Similarity=0.156 Sum_probs=41.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHc--
Q 006615 179 MSVYAKTGKNFEAVETFRQVIDE--GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG-- 254 (638)
Q Consensus 179 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-- 254 (638)
|.+++..+++.+++...-+--+. .++|. ....-|-.|.|.|....+.++-..-.+..-..+..-|.++...|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 55566666666655544433332 12222 2333344456666666555555444332112223335555544433
Q ss_pred ---cCCHHHHHHHH
Q 006615 255 ---VERFDEAKSLL 265 (638)
Q Consensus 255 ---~g~~~~A~~l~ 265 (638)
.|.+++|.++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 57777777766
No 333
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=59.56 E-value=87 Score=24.82 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=24.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHh
Q 006615 482 LYSSLLRTLTKCKRDFDAINVLEEMIF 508 (638)
Q Consensus 482 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 508 (638)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588899999999999999999998877
No 334
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=59.52 E-value=31 Score=22.51 Aligned_cols=33 Identities=6% Similarity=0.052 Sum_probs=18.5
Q ss_pred HccCChHHHHHHHHHHHhCCCCcchhhHHHHHH
Q 006615 491 TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMY 523 (638)
Q Consensus 491 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 523 (638)
.+.|-..++..++++|.+.|+.-+...|..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345555566666666666665555555554443
No 335
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=59.23 E-value=38 Score=22.07 Aligned_cols=37 Identities=27% Similarity=0.462 Sum_probs=29.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006615 413 LTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIID 449 (638)
Q Consensus 413 i~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~ 449 (638)
+....+.|-.+++..+++.|.+.|+..+...|..++.
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3445677888899999999999999988888877765
No 336
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=59.19 E-value=27 Score=20.22 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=14.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHh
Q 006615 482 LYSSLLRTLTKCKRDFDAINVLEEMIF 508 (638)
Q Consensus 482 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 508 (638)
+|..+...|.+.|+.++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555555555555555555443
No 337
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=59.06 E-value=48 Score=33.61 Aligned_cols=147 Identities=14% Similarity=0.103 Sum_probs=88.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccC------CCcchhHHHHHHHHHHHHH--
Q 006615 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCG------PISKFKLMLLYSSLLRTLT-- 491 (638)
Q Consensus 420 g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~~~~li~~~~-- 491 (638)
+.+++-.++++.+.+.|- +| ....-|+.|.+.+++++|...+++-.+... +..... +.....++...-
T Consensus 68 ~~~~e~i~lL~~l~~~g~-ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhG-v~~~R~l~~~v~~P 143 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEGG-AD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHG-VKGCRKVLEAVNLP 143 (480)
T ss_pred CcHHHHHHHHHHHHHccC-CC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCccccc-HHHHHHHHHhCCCC
Confidence 357888899999988862 23 334568999999999999999987544211 111111 234444554431
Q ss_pred ---ccCChHHHHHHHHHHHhCCCCcc---hhhHHHHHHHHHccCCHHHHHHHHHHH-------HhCCCCCCHhhHHHHHH
Q 006615 492 ---KCKRDFDAINVLEEMIFSGIVPD---VQTFSGLMYHFALQGDEKIVQKLFSMV-------RQNGVEPDAYMFKVLIQ 558 (638)
Q Consensus 492 ---~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~a~~l~~~m-------~~~~~~p~~~~~~~li~ 558 (638)
++| ..+|..+++-+...|+.-. .++||. -|++.=-+++++.-|+.+ .+.|+..|..+|..|..
T Consensus 144 vQvRHG-tpDarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtg 219 (480)
T TIGR01503 144 LQIRHG-TPDARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTG 219 (480)
T ss_pred eeccCC-CCcHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCC
Confidence 233 3457888888888887543 345553 355555566666666532 34677777777766543
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHH
Q 006615 559 AYCKYLSNSNLMPDAATKELLKKS 582 (638)
Q Consensus 559 ~~~~~m~~~g~~p~~~~~~~li~~ 582 (638)
.++ .|+...--.++.+
T Consensus 220 tLv--------PPsisiav~ilE~ 235 (480)
T TIGR01503 220 TLV--------PPSISNAIGIIEG 235 (480)
T ss_pred Ccc--------ChHHHHHHHHHHH
Confidence 333 5555444444444
No 338
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=58.67 E-value=1.3e+02 Score=28.53 Aligned_cols=17 Identities=24% Similarity=0.153 Sum_probs=7.8
Q ss_pred HHHHHcCCChhHHHHHH
Q 006615 73 THALRSAPNADSALSIM 89 (638)
Q Consensus 73 ~~~l~~~~~~~~Al~~~ 89 (638)
|.++...+++.+++.+.
T Consensus 90 IQALAEmnrWreVLsWv 106 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWV 106 (309)
T ss_pred HHHHHHHhhHHHHHHHH
Confidence 34444444444444433
No 339
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=57.27 E-value=74 Score=25.84 Aligned_cols=59 Identities=5% Similarity=0.087 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 006615 120 ELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM 179 (638)
Q Consensus 120 ~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li 179 (638)
+..+-++.+..-.+.|++.+-..-++++-+.+++..|..+|+-++.+ +.+.-..|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 34555666667777888888888888888888888888888888765 223333455444
No 340
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.15 E-value=1.6e+02 Score=27.09 Aligned_cols=29 Identities=7% Similarity=0.066 Sum_probs=21.1
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 006615 250 EGFVGVERFDEAKSLLNEMRDDGKFPGRA 278 (638)
Q Consensus 250 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 278 (638)
..-+..+++.+|+++|++.....+.....
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 33456788999999999997766555443
No 341
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=56.44 E-value=1.1e+02 Score=24.95 Aligned_cols=70 Identities=7% Similarity=0.153 Sum_probs=47.7
Q ss_pred HHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCC
Q 006615 499 AINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNL 569 (638)
Q Consensus 499 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~ 569 (638)
..+-++......+.|+......-+++|.+..++..|.++|+-++.+ ..+....|-.+++-.--...+.||
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~elkpvl~ELGI 137 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVKELKPVLNELGI 137 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHhCC
Confidence 4445566666778899999999999999999999999999988764 233333455544443333444444
No 342
>PF13934 ELYS: Nuclear pore complex assembly
Probab=56.33 E-value=1.3e+02 Score=27.62 Aligned_cols=101 Identities=7% Similarity=0.050 Sum_probs=57.8
Q ss_pred HHHHHHH--cCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHH
Q 006615 71 IVTHALR--SAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS 148 (638)
Q Consensus 71 ~~~~~l~--~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~ 148 (638)
..+.++. ..+++++|++.+-. +...|+ --..++.++...|+.+.|..++....-... +...-..++.. .
T Consensus 81 ~~~~g~W~LD~~~~~~A~~~L~~----ps~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~-L 151 (226)
T PF13934_consen 81 KFIQGFWLLDHGDFEEALELLSH----PSLIPW--FPDKILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA-L 151 (226)
T ss_pred HHHHHHHHhChHhHHHHHHHhCC----CCCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH-H
Confidence 3556665 44667777777622 223333 223577778778888888888776543221 22222333333 6
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHH
Q 006615 149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183 (638)
Q Consensus 149 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 183 (638)
.++.+.+|..+-+...+.. ....+..++..+.
T Consensus 152 a~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 152 ANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred HcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 6688888887776665532 1345666665555
No 343
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=55.97 E-value=95 Score=24.12 Aligned_cols=49 Identities=12% Similarity=0.110 Sum_probs=21.5
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006615 147 YSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201 (638)
Q Consensus 147 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 201 (638)
+...|++++|..+.+.+ ..||...|-+|-.. +.|..+++..-+.+|..+
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 34445555555444433 23445544444322 334444444444444443
No 344
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.44 E-value=1.7e+02 Score=26.91 Aligned_cols=26 Identities=8% Similarity=-0.001 Sum_probs=18.6
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHccC
Q 006615 579 LKKSLWKEGRRKEAAAVEERCEKIND 604 (638)
Q Consensus 579 li~~~~~~g~~~~A~~~~~~~~~~~~ 604 (638)
+...-+..|++.+|.+++++.-..-.
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334577899999999998776554
No 345
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=55.28 E-value=2e+02 Score=27.60 Aligned_cols=14 Identities=14% Similarity=0.005 Sum_probs=6.8
Q ss_pred HHHHHHHcCChHHH
Q 006615 282 ALERMQEMGFIQGA 295 (638)
Q Consensus 282 ll~~~~~~g~~~~a 295 (638)
++.+++..|+.+-.
T Consensus 327 LL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 327 LLAAFCSQGQSELE 340 (412)
T ss_pred HHHHHhcCChHHHH
Confidence 44555555554433
No 346
>PRK11619 lytic murein transglycosylase; Provisional
Probab=55.23 E-value=3.2e+02 Score=29.98 Aligned_cols=222 Identities=12% Similarity=0.023 Sum_probs=113.1
Q ss_pred HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhc-
Q 006615 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS- 150 (638)
Q Consensus 72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~- 150 (638)
...++...|+.++|....+.+=..+...|+ .++.++..+.+.|.+.... ++.+|...-...+...-..|...+...
T Consensus 135 ~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~--~cd~l~~~~~~~g~lt~~d-~w~R~~~al~~~~~~lA~~l~~~l~~~~ 211 (644)
T PRK11619 135 YYYAKWATGQQQEAWQGAKELWLTGKSLPN--ACDKLFSVWQQSGKQDPLA-YLERIRLAMKAGNTGLVTYLAKQLPADY 211 (644)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCCh--HHHHHHHHHHHcCCCCHHH-HHHHHHHHHHCCCHHHHHHHHHhcChhH
Confidence 455666677777776666665544444444 6777777777666554332 222222110111111112222211000
Q ss_pred -----------CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHH--hcCChHHHHHHHHHHHHc-CCCCC--HHHHHHHH
Q 006615 151 -----------GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA--KTGKNFEAVETFRQVIDE-GAIPN--SRTYTVMI 214 (638)
Q Consensus 151 -----------g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~-g~~p~--~~ty~~li 214 (638)
.+...+..++. .+.|+...-..++-++. ...+.+.|..++...... ++.+. ......+.
T Consensus 212 ~~~a~a~~al~~~p~~~~~~~~-----~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA 286 (644)
T PRK11619 212 QTIASALIKLQNDPNTVETFAR-----TTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVA 286 (644)
T ss_pred HHHHHHHHHHHHCHHHHHHHhh-----ccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 01111111111 12233322222222322 235668888888887553 23322 22333443
Q ss_pred HHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHcCChH
Q 006615 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQ 293 (638)
Q Consensus 215 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~-~~ll~~~~~~g~~~ 293 (638)
...+..+...+|...++...... .|......-+....+.++++.+...+..|....- -...+ |=+..++...|+.+
T Consensus 287 ~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~ 363 (644)
T PRK11619 287 WRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLEQGRKA 363 (644)
T ss_pred HHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHH
Confidence 33334333667777777655322 2444455556666688999999888888744222 22233 45566767789999
Q ss_pred HHHHHHHHhCc
Q 006615 294 GANEFLREMLP 304 (638)
Q Consensus 294 ~a~~~~~~~~~ 304 (638)
+|...|+....
T Consensus 364 ~A~~~~~~~a~ 374 (644)
T PRK11619 364 EAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHHHhc
Confidence 99999998743
No 347
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=55.20 E-value=69 Score=28.03 Aligned_cols=43 Identities=14% Similarity=0.082 Sum_probs=31.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCC
Q 006615 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530 (638)
Q Consensus 485 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 530 (638)
..+..|.+.|.+++|.+++++... .|+......-+....+.++
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence 345678899999999999999887 4666666555555555443
No 348
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=55.19 E-value=20 Score=19.60 Aligned_cols=29 Identities=21% Similarity=0.157 Sum_probs=24.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcc
Q 006615 575 TKELLKKSLWKEGRRKEAAAVEERCEKIN 603 (638)
Q Consensus 575 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 603 (638)
.|..+...+...|++++|...++...+..
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 56778889999999999999999887643
No 349
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=54.88 E-value=2.2e+02 Score=27.97 Aligned_cols=29 Identities=17% Similarity=0.101 Sum_probs=20.1
Q ss_pred HHHhccCcHHHHHHHHHHHHHccCCCCcc
Q 006615 581 KSLWKEGRRKEAAAVEERCEKINDVPSLA 609 (638)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (638)
..+..+|..+.|..+++.+.+.+.-.|..
T Consensus 162 ~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~ 190 (321)
T PF08424_consen 162 RFLRQAGYTERAVALWQALLEFNFFRPES 190 (321)
T ss_pred HHHHHCCchHHHHHHHHHHHHHHcCCccc
Confidence 33457788888888888888877755543
No 350
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=54.33 E-value=1.6e+02 Score=26.33 Aligned_cols=131 Identities=15% Similarity=0.088 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchh-hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 006615 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ-TFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQA 559 (638)
Q Consensus 481 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~ 559 (638)
...+.++..+...|+++.|.++|.-+.... ..|.. .|..=+.-+.+.+.-....+.++.|... -|....++. .
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~--y~~~~~~~~---~ 115 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLISF--YPSRKAFNQ---Y 115 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHHHH--HHHhhhccc---h
Confidence 345556666666777777777776666542 22332 2444444444444443333444444321 010000000 0
Q ss_pred HHHH----hhhCC---CCCCH---HHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCcccccceeee
Q 006615 560 YCKY----LSNSN---LMPDA---ATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWAV 617 (638)
Q Consensus 560 ~~~~----m~~~g---~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~w~~ 617 (638)
..+. .-+.| ..|.- ..|..|+..-.+....+++.++.++|.+.-..||...++..|..
T Consensus 116 ~~~~~~~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PPy~d~~el~~i 183 (199)
T PF04090_consen 116 YNRRIIAPVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDELVLSPPYMDDGELWFI 183 (199)
T ss_pred hhhhcccccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCCCCCcHHHHHH
Confidence 0000 00111 12221 12344444444555677899999999999999999888887754
No 351
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=53.96 E-value=94 Score=27.22 Aligned_cols=79 Identities=18% Similarity=0.252 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHccCChHH-------HHHHHHHHHhCCCCcch-hhHHHHHHHHHccC----CHHHHHHHH-------HHH
Q 006615 481 LLYSSLLRTLTKCKRDFD-------AINVLEEMIFSGIVPDV-QTFSGLMYHFALQG----DEKIVQKLF-------SMV 541 (638)
Q Consensus 481 ~~~~~li~~~~~~g~~~~-------A~~l~~~m~~~g~~p~~-~t~~~li~~~~~~g----~~~~a~~l~-------~~m 541 (638)
.-|...+.-+.+.....+ |..-|++.+. +.|+- .++..+-.+|...+ +..+|.++| +..
T Consensus 29 ~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkA 106 (186)
T PF06552_consen 29 TNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKA 106 (186)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 345555555554444444 4444444444 46764 56666666665443 334455555 444
Q ss_pred HhCCCCCCHhhHHHHHHHHHHH
Q 006615 542 RQNGVEPDAYMFKVLIQAYCKY 563 (638)
Q Consensus 542 ~~~~~~p~~~~~~~li~~~~~~ 563 (638)
.+ ..|+..+|+.-+....+.
T Consensus 107 v~--~~P~ne~Y~ksLe~~~ka 126 (186)
T PF06552_consen 107 VD--EDPNNELYRKSLEMAAKA 126 (186)
T ss_dssp HH--H-TT-HHHHHHHHHHHTH
T ss_pred Hh--cCCCcHHHHHHHHHHHhh
Confidence 44 468888888877777665
No 352
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=53.38 E-value=35 Score=23.73 Aligned_cols=29 Identities=10% Similarity=0.177 Sum_probs=14.1
Q ss_pred chhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 006615 514 DVQTFSGLMYHFALQGDEKIVQKLFSMVR 542 (638)
Q Consensus 514 ~~~t~~~li~~~~~~g~~~~a~~l~~~m~ 542 (638)
|-.---.+|.+|...|++++|.++.+.+.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33333444555555555555555555444
No 353
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=52.99 E-value=25 Score=33.48 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=20.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhH
Q 006615 518 FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553 (638)
Q Consensus 518 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~ 553 (638)
||.-|....+.||+++|+.++++.++.|+.--..||
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 445566666666666666666666666554444333
No 354
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=52.23 E-value=96 Score=29.26 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=19.7
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHH
Q 006615 577 ELLKKSLWKEGRRKEAAAVEERCE 600 (638)
Q Consensus 577 ~~li~~~~~~g~~~~A~~~~~~~~ 600 (638)
..++..+.+.|.+.+|..+++-..
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHH
Confidence 568899999999999998776543
No 355
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=52.18 E-value=1.7e+02 Score=25.81 Aligned_cols=63 Identities=17% Similarity=0.288 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhcCCCCC--HHhH-----HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006615 153 LELVLSTWNEYRQRAKLLS--TESY-----NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218 (638)
Q Consensus 153 ~~~A~~l~~~m~~~~~~p~--~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~ 218 (638)
++.|+.+|+.+.+.--.|. ...- -..+-.|.++|.+++|.+++++..+. |+......-+....
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II 154 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMII 154 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHH
Confidence 5667777776665432220 1111 12234566777777777777776653 44444443333333
No 356
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=50.85 E-value=55 Score=24.06 Aligned_cols=46 Identities=7% Similarity=0.086 Sum_probs=21.0
Q ss_pred cCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHH
Q 006615 454 SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAIN 501 (638)
Q Consensus 454 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 501 (638)
..+.++|+..|....+.... .++-..+...++.+|+..|+++++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~--~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITD--REDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCC--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554443222 11222444555555555555555444
No 357
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=50.44 E-value=1.6e+02 Score=24.98 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=9.3
Q ss_pred HhcCChHHHHHHHHHHHHc
Q 006615 183 AKTGKNFEAVETFRQVIDE 201 (638)
Q Consensus 183 ~~~g~~~~A~~~~~~m~~~ 201 (638)
...|++++|..+|++..+.
T Consensus 55 i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 55 IARGNYDEAARILRELLSS 73 (153)
T ss_pred HHcCCHHHHHHHHHhhhcc
Confidence 3445555555555554443
No 358
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.37 E-value=1.9e+02 Score=25.84 Aligned_cols=127 Identities=8% Similarity=0.055 Sum_probs=77.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHH--HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH--
Q 006615 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV--MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI-- 214 (638)
Q Consensus 139 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l--i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li-- 214 (638)
.|..++...- .+.. +.....+.+...+-...-.++.+| ...++.++++++|...++.-... |....+..++
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~l 130 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHH
Confidence 3555555443 2333 444555555544311111222222 35577889999999888877653 4444555444
Q ss_pred ---HHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615 215 ---EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272 (638)
Q Consensus 215 ---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 272 (638)
+.....|.+|+|...++.....+.. ......--+.+...|+-++|..-|.+....+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 4567788999999998877653321 1222333477888999999999999988876
No 359
>PHA02875 ankyrin repeat protein; Provisional
Probab=49.88 E-value=2.2e+02 Score=29.08 Aligned_cols=207 Identities=11% Similarity=0.010 Sum_probs=101.6
Q ss_pred HHHHcCCChhHHHHHHHHHHcCCCCCCChh--HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchH--hHHHHHHHHHh
Q 006615 74 HALRSAPNADSALSIMEALKSNPNFSHNQS--TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV--NFMNLMQWYST 149 (638)
Q Consensus 74 ~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~--~~~~ll~~~~~ 149 (638)
......|+.+-+..+++. |..|+.. .-...+..++..|+.+-+.- +.+.|..|+.. .....+...++
T Consensus 7 ~~A~~~g~~~iv~~Ll~~-----g~~~n~~~~~g~tpL~~A~~~~~~~~v~~----Ll~~ga~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 7 CDAILFGELDIARRLLDI-----GINPNFEIYDGISPIKLAMKFRDSEAIKL----LMKHGAIPDVKYPDIESELHDAVE 77 (413)
T ss_pred HHHHHhCCHHHHHHHHHC-----CCCCCccCCCCCCHHHHHHHcCCHHHHHH----HHhCCCCccccCCCcccHHHHHHH
Confidence 334455666555554442 2333221 12234455566777764444 44445444322 12234556678
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCCHHHHH
Q 006615 150 SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY--TVMIEHLVNLGKLDSAL 227 (638)
Q Consensus 150 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty--~~li~~~~~~g~~~~A~ 227 (638)
.|+.+.+..+++.-....-..+..- .+.+...+..|+.+ +++.+.+.|..|+.... .+.+...+..|+.+-+.
T Consensus 78 ~g~~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~ 152 (413)
T PHA02875 78 EGDVKAVEELLDLGKFADDVFYKDG-MTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE 152 (413)
T ss_pred CCCHHHHHHHHHcCCcccccccCCC-CCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 8998877666653211110011111 23344455667654 45555566766653321 24455666788887776
Q ss_pred HHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHcCChHHHHHHHH
Q 006615 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM----RVALERMQEMGFIQGANEFLR 300 (638)
Q Consensus 228 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~----~~ll~~~~~~g~~~~a~~~~~ 300 (638)
.+++.-.... ..|..-++.| ...+..|+.+ +.+.+.+.|..++... .+++...+..|+.+-+.-+++
T Consensus 153 ~Ll~~g~~~~-~~d~~g~TpL-~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~ 223 (413)
T PHA02875 153 LLIDHKACLD-IEDCCGCTPL-IIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIK 223 (413)
T ss_pred HHHhcCCCCC-CCCCCCCCHH-HHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH
Confidence 6665432211 1122223333 3344556654 3444555666665422 244554566777766555554
No 360
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=49.01 E-value=2.5e+02 Score=26.87 Aligned_cols=157 Identities=10% Similarity=0.012 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHH-------h-------------------cCCCCCH
Q 006615 119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYR-------Q-------------------RAKLLST 172 (638)
Q Consensus 119 ~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~-------~-------------------~~~~p~~ 172 (638)
..|.++|..+..+.-. ..+-..++.++....+..+|...+.... . .++.-|+
T Consensus 150 ~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv 227 (361)
T COG3947 150 RKALELFAYLVEHKGK--EVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDV 227 (361)
T ss_pred hHHHHHHHHHHHhcCC--cccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccH
Confidence 4666677666543211 1223455666666666666655544321 1 1223455
Q ss_pred HhHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCC-----------------HHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 006615 173 ESYNIVMSVYAK-TGKNFEAVETFRQVIDEGAIPN-----------------SRTYTVMIEHLVNLGKLDSALEVFSALP 234 (638)
Q Consensus 173 ~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~-----------------~~ty~~li~~~~~~g~~~~A~~~~~~m~ 234 (638)
.-|-..+.-.-+ +-.++++.++....+.. .-|+ ..+++...+.|..+|.+.+|.++.+...
T Consensus 228 ~e~es~~rqi~~inltide~kelv~~ykgd-yl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~l 306 (361)
T COG3947 228 QEYESLARQIEAINLTIDELKELVGQYKGD-YLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRAL 306 (361)
T ss_pred HHHHHHhhhhhccccCHHHHHHHHHHhcCC-cCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 555555544332 23455555555544321 2221 1233455567888999999999988887
Q ss_pred cCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHH-----hCCCCCCHHH
Q 006615 235 LMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR-----DDGKFPGRAM 279 (638)
Q Consensus 235 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-----~~g~~p~~~~ 279 (638)
... +.+...|-.|+..+...|+--.|.+-++++. ..|+..+...
T Consensus 307 tld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 307 TLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred hcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 654 4577888889999999999777777777763 3466655544
No 361
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.62 E-value=1.1e+02 Score=24.22 Aligned_cols=27 Identities=22% Similarity=0.498 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006615 174 SYNIVMSVYAKTGKNFEAVETFRQVID 200 (638)
Q Consensus 174 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 200 (638)
-|..|+.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477777777777888888888777766
No 362
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=47.94 E-value=2.2e+02 Score=26.03 Aligned_cols=99 Identities=14% Similarity=0.047 Sum_probs=45.3
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---chHhH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 006615 98 FSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLN---VSVNF--MNLMQWYSTSGDLELVLSTWNEYRQRAKLLST 172 (638)
Q Consensus 98 ~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~---~~~~~--~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 172 (638)
+.+....+|.|+--|.-...+.+|-..|.. ..|+.+ |..++ ..-|+...+.|+.++|.+...++-..=+.-|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 344444455555555544444444444432 222222 22222 23455566667777776666655432222222
Q ss_pred HhHHHHHH----HHHhcCChHHHHHHHHHH
Q 006615 173 ESYNIVMS----VYAKTGKNFEAVETFRQV 198 (638)
Q Consensus 173 ~~~~~li~----~~~~~g~~~~A~~~~~~m 198 (638)
..+-.|.. -+.+.|..++|+++.+.=
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 22222221 134555666666655543
No 363
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=47.55 E-value=94 Score=26.24 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=32.4
Q ss_pred HHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 006615 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG 221 (638)
Q Consensus 159 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 221 (638)
+.+.+.+.|+++ +.--..++..+.+.++.-.|.++|+++.+.+...+..|.--.++.+...|
T Consensus 8 ~~~~lk~~glr~-T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRL-TPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCc-CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334455555554 33345556666666555666666666666554444444333334444444
No 364
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=47.52 E-value=93 Score=33.10 Aligned_cols=93 Identities=9% Similarity=-0.001 Sum_probs=61.2
Q ss_pred HHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChH------HHHHHHHHHHhCCCCcchhhHH
Q 006615 446 LIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDF------DAINVLEEMIFSGIVPDVQTFS 519 (638)
Q Consensus 446 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~------~A~~l~~~m~~~g~~p~~~t~~ 519 (638)
+|..+|...|++-.+.++++........ .+. ....||..|....+.|.++ .|.++++... +.-|..||.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~-~k~-~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~a 107 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKG-DKI-LLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYA 107 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcC-Cee-ehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHH
Confidence 8888899999999998888887654322 111 2367888888888888764 2333333333 566888888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh
Q 006615 520 GLMYHFALQGDEKIVQKLFSMVRQ 543 (638)
Q Consensus 520 ~li~~~~~~g~~~~a~~l~~~m~~ 543 (638)
.|+.+-..--+-.-..-++.+.+.
T Consensus 108 ll~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 108 LLCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHHHhhcChHhHHhccHHHHHHHH
Confidence 888876664444445555555554
No 365
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=47.36 E-value=1.7e+02 Score=28.43 Aligned_cols=80 Identities=14% Similarity=0.153 Sum_probs=43.5
Q ss_pred ccCCHHHHHHHHHhchhccCCCcchhH-HHHHHHHHHHHHccCChHHHHHHHHHHHh-----CCCCcchhh-HHHHHH-H
Q 006615 453 ISKKADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIF-----SGIVPDVQT-FSGLMY-H 524 (638)
Q Consensus 453 ~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t-~~~li~-~ 524 (638)
+.++.++|.++++++.+.......|+. ...-+.+...+...|+..++.+++++.++ .|++|++++ |..+-. .
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqY 166 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQY 166 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHH
Confidence 344566666666665544333334332 12234455566677788888887777766 567776554 444433 3
Q ss_pred HHccCCHH
Q 006615 525 FALQGDEK 532 (638)
Q Consensus 525 ~~~~g~~~ 532 (638)
|-..|++.
T Consensus 167 yk~~~d~a 174 (380)
T KOG2908|consen 167 YKKIGDFA 174 (380)
T ss_pred HHHHHhHH
Confidence 34444443
No 366
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.26 E-value=69 Score=28.56 Aligned_cols=31 Identities=13% Similarity=-0.038 Sum_probs=15.9
Q ss_pred CchHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006615 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQ 165 (638)
Q Consensus 135 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 165 (638)
|++.+|..++.++...|+.++|.++.+++..
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444455555555555555555555555443
No 367
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=46.88 E-value=2.3e+02 Score=25.85 Aligned_cols=123 Identities=16% Similarity=0.148 Sum_probs=78.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHH
Q 006615 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVP-DVQTFSGLMYHFALQGDEKIVQKLFSMVRQN--GVEPDAYMFKVLIQA 559 (638)
Q Consensus 483 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~--~~~p~~~~~~~li~~ 559 (638)
.+..+..+.+.+++.+|+...++-.+. +| |.-+-..+++-+|-.|++++|..-++-.-+. ...+-..+|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 345567788889999999988887775 45 5556677889999999999998877766653 234556777777766
Q ss_pred HHHH--hhhCCCC------CCHHHHHHHHHHHh-ccC-cHHHHHHHHHHHHHccCCCC
Q 006615 560 YCKY--LSNSNLM------PDAATKELLKKSLW-KEG-RRKEAAAVEERCEKINDVPS 607 (638)
Q Consensus 560 ~~~~--m~~~g~~------p~~~~~~~li~~~~-~~g-~~~~A~~~~~~~~~~~~~~~ 607 (638)
-.-+ .-.-+.. |...-...|..++. +.+ .-+.+..+-+...+....++
T Consensus 82 ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 82 EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 5443 2222222 33333455555554 444 44446666666666655443
No 368
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=46.43 E-value=2.9e+02 Score=26.89 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=10.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 006615 141 MNLMQWYSTSGDLELVLSTWNE 162 (638)
Q Consensus 141 ~~ll~~~~~~g~~~~A~~l~~~ 162 (638)
......||+-|+-+.|++.+..
T Consensus 108 ~~kaeYycqigDkena~~~~~~ 129 (393)
T KOG0687|consen 108 LRKAEYYCQIGDKENALEALRK 129 (393)
T ss_pred HHHHHHHHHhccHHHHHHHHHH
Confidence 3344445555555555444443
No 369
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=46.29 E-value=3.3e+02 Score=27.52 Aligned_cols=55 Identities=15% Similarity=0.097 Sum_probs=35.9
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCcchh--hHHHHHHHHH--ccCCHHHHHHHHHHHHhC
Q 006615 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQ--TFSGLMYHFA--LQGDEKIVQKLFSMVRQN 544 (638)
Q Consensus 489 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~li~~~~--~~g~~~~a~~l~~~m~~~ 544 (638)
.+...+++..|.++|+++... ++++.. .|..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344677888888888888776 555444 3444555554 356677888888776654
No 370
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=46.26 E-value=2.5e+02 Score=27.46 Aligned_cols=86 Identities=14% Similarity=0.276 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHhccc-----CCCccCHhH
Q 006615 175 YNIVMSVYAKTGKNFEAVETFRQVIDE---GAIPNSRTYTV--MIEHLVNLGKLDSALEVFSALPL-----MRIKRTSKQ 244 (638)
Q Consensus 175 ~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~ty~~--li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 244 (638)
...++...-+.++.++|++.++++.+. --.|+.+.|.. +.+.+...|++.++.+++++..+ .|++|++.+
T Consensus 78 vei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 78 VEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 334444455556777777777777653 22355555543 34445566777777777766655 455555443
Q ss_pred -HHHHHHHHH-ccCCHHH
Q 006615 245 -YLILVEGFV-GVERFDE 260 (638)
Q Consensus 245 -~~~li~~~~-~~g~~~~ 260 (638)
|+.+-.-|. +.|++..
T Consensus 158 ~fY~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 158 SFYSLSSQYYKKIGDFAS 175 (380)
T ss_pred hHHHHHHHHHHHHHhHHH
Confidence 444443333 3444443
No 371
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.08 E-value=4.5e+02 Score=29.00 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=18.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 006615 411 KMLTILARHGHVELVDRLIAKLR 433 (638)
Q Consensus 411 ~li~~~~~~g~~~~a~~l~~~m~ 433 (638)
.|+..|...+++.+|+.++-..+
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhcc
Confidence 37778888999999998887766
No 372
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=46.04 E-value=3.7e+02 Score=28.03 Aligned_cols=167 Identities=17% Similarity=0.184 Sum_probs=109.5
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 006615 100 HNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM 179 (638)
Q Consensus 100 ~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li 179 (638)
.|....-+++..++....+.-.+.+..+|..-| .+...|..+++.|... ..+.-..+|+++.+..+. |++.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 344567778888888888888888888888754 5556688888988888 557778888888877532 344444444
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC--C---HHHHHHHHHHHHHcCCHHHHHHHHHhccc-CCCccCHhHHHHHHHHHH
Q 006615 180 SVYAKTGKNFEAVETFRQVIDEGAIP--N---SRTYTVMIEHLVNLGKLDSALEVFSALPL-MRIKRTSKQYLILVEGFV 253 (638)
Q Consensus 180 ~~~~~~g~~~~A~~~~~~m~~~g~~p--~---~~ty~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~ 253 (638)
.-|-+ ++...+..+|......=++- + ...|.-+...- ..+.|....+...+.. .|...-.+.+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 44444 88888888888776642210 1 12333333211 2456666666666554 454455566666667788
Q ss_pred ccCCHHHHHHHHHHHHhCCC
Q 006615 254 GVERFDEAKSLLNEMRDDGK 273 (638)
Q Consensus 254 ~~g~~~~A~~l~~~m~~~g~ 273 (638)
...++++|++++..+.+.+-
T Consensus 217 ~~eN~~eai~Ilk~il~~d~ 236 (711)
T COG1747 217 ENENWTEAIRILKHILEHDE 236 (711)
T ss_pred cccCHHHHHHHHHHHhhhcc
Confidence 88889999998887765543
No 373
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=45.94 E-value=2e+02 Score=29.45 Aligned_cols=122 Identities=13% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCH
Q 006615 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERF 258 (638)
Q Consensus 179 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 258 (638)
|.--...|++-.|-+-+...... .+-++...-..-......|+++.+.+.+...... +.....+-.++++...+.|++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRN-QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHh
Q 006615 259 DEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREM 302 (638)
Q Consensus 259 ~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~ 302 (638)
++|..+-.-|....+................|-++++...|+++
T Consensus 374 ~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~ 417 (831)
T PRK15180 374 REALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRV 417 (831)
T ss_pred HHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHH
No 374
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=45.26 E-value=4.4e+02 Score=28.72 Aligned_cols=132 Identities=10% Similarity=0.078 Sum_probs=79.5
Q ss_pred CHHHHHHHHHcCCChhHHHHHHHHHHcC-CC--CCCChhHHHHH-HHHHHhcCChHHHHHHHHHHHhCC---CCCchHhH
Q 006615 68 DPFIVTHALRSAPNADSALSIMEALKSN-PN--FSHNQSTLHAL-ATVLAKSQRNHELKTLIGDISSSK---FLNVSVNF 140 (638)
Q Consensus 68 ~~~~~~~~l~~~~~~~~Al~~~~~~~~~-~~--~~~~~~~~~~l-i~~~~~~~~~~~a~~l~~~~~~~~---~~~~~~~~ 140 (638)
..++++..+.+.+... |+...+...+. .+ ..+-...|..+ +..+...++...|.+.++.+.... ..|-..++
T Consensus 102 ~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~ 180 (608)
T PF10345_consen 102 CQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL 180 (608)
T ss_pred HHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 3455677777777666 88888876632 12 22223334444 333334479999999998876422 23334444
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHHHHhcC---------CCCCHHhHHHHHHHHH--hcCChHHHHHHHHHHHH
Q 006615 141 MNLMQWYS--TSGDLELVLSTWNEYRQRA---------KLLSTESYNIVMSVYA--KTGKNFEAVETFRQVID 200 (638)
Q Consensus 141 ~~ll~~~~--~~g~~~~A~~l~~~m~~~~---------~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~ 200 (638)
-.++.+.. +.+..+++.+..+++.... ..|-..+|..+++.++ ..|+++.+...++++.+
T Consensus 181 ~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 181 ASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555444 4466677888877774322 2345777888887654 57777777777766654
No 375
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=44.55 E-value=2.3e+02 Score=25.21 Aligned_cols=111 Identities=15% Similarity=0.077 Sum_probs=61.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhC--CCCcchhhHHHHHH-HHHccC--CHHHHHHHHHHHHhCCCCCCHh----hH
Q 006615 483 YSSLLRTLTKCKRDFDAINVLEEMIFS--GIVPDVQTFSGLMY-HFALQG--DEKIVQKLFSMVRQNGVEPDAY----MF 553 (638)
Q Consensus 483 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~li~-~~~~~g--~~~~a~~l~~~m~~~~~~p~~~----~~ 553 (638)
+....-.....|++++|..-++++.+. .++--...|.-+.. +++..+ .+-+|.-++..+...+ .|... .+
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~-~ps~~EL~V~~ 110 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGR-LPSPEELGVPP 110 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCC-CCCHHHcCCCH
Confidence 333344456677888888888777552 12223345555555 566555 3567777777666543 34422 22
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcc
Q 006615 554 KVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIN 603 (638)
Q Consensus 554 ~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 603 (638)
-..|.|.+.... -....+--..+.|++++|++.++-|.+..
T Consensus 111 ~~YilGl~D~vG---------ELrR~~le~l~~~~~~~Ae~~~~~ME~lY 151 (204)
T COG2178 111 IAYILGLADAVG---------ELRRHVLELLRKGSFEEAERFLKFMEKLY 151 (204)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 223333332200 01122233457799999999999888753
No 376
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=43.99 E-value=52 Score=31.36 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=35.7
Q ss_pred chhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHH
Q 006615 476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSG 520 (638)
Q Consensus 476 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 520 (638)
.|+...-|+..|..-.+.|++++|+++++|.++.|+.--..+|-.
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 345456788999999999999999999999999997654444433
No 377
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=43.84 E-value=1.5e+02 Score=28.76 Aligned_cols=48 Identities=15% Similarity=-0.005 Sum_probs=21.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHH
Q 006615 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE 193 (638)
Q Consensus 145 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 193 (638)
+-|.+.|.+++|...|..-.... +-|.++|..-..+|.+...+..|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHH
Confidence 34445555555555554433321 1144444444445555544444433
No 378
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=43.55 E-value=2e+02 Score=28.09 Aligned_cols=45 Identities=11% Similarity=-0.220 Sum_probs=25.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHcccCCHHHHHH
Q 006615 416 LARHGHVELVDRLIAKLRSDGMRL-PFSTIRLIIDFYGISKKADAALK 462 (638)
Q Consensus 416 ~~~~g~~~~a~~l~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~ 462 (638)
|.+.|.+++|.+.|..-.... | |.+++..-..+|.+..++..|..
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHH
Confidence 556666667766666554332 3 55555555556666655554443
No 379
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=43.20 E-value=34 Score=23.83 Aligned_cols=29 Identities=17% Similarity=0.085 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 006615 573 AATKELLKKSLWKEGRRKEAAAVEERCEK 601 (638)
Q Consensus 573 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 601 (638)
..-.-.+|.+|...|++++|.++++.+.+
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33445689999999999999999998765
No 380
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=43.07 E-value=98 Score=27.59 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=13.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 006615 205 PNSRTYTVMIEHLVNLGKLDSALEVFSAL 233 (638)
Q Consensus 205 p~~~ty~~li~~~~~~g~~~~A~~~~~~m 233 (638)
|+..+|..++..+...|+.++|.++.+++
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444444444444444444444443
No 381
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=42.61 E-value=2.8e+02 Score=25.62 Aligned_cols=151 Identities=15% Similarity=0.199 Sum_probs=82.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 006615 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG 221 (638)
Q Consensus 142 ~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 221 (638)
..+..|.+.-++.-|...++.+.+. ..+-.++++ |.+-.+-.--.++.+-....++.-+..-...++ +...|
T Consensus 135 RtMEiyS~ttRFalaCN~s~KIiEP-----IQSRCAiLR-ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~G 206 (333)
T KOG0991|consen 135 RTMEIYSNTTRFALACNQSEKIIEP-----IQSRCAILR-YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQG 206 (333)
T ss_pred HHHHHHcccchhhhhhcchhhhhhh-----HHhhhHhhh-hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccc
Confidence 4455666666666666555555432 223333322 333333333333333334445544444444433 23456
Q ss_pred CHHHHHHHHHhccc-CC-----------CccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006615 222 KLDSALEVFSALPL-MR-----------IKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEM 289 (638)
Q Consensus 222 ~~~~A~~~~~~m~~-~g-----------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~ 289 (638)
+...|...++.-.. .| -.|.......++..|. .+++++|.+++.++-+.|..|.....++.+.+-..
T Consensus 207 DMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii~~~FRv~K~~ 285 (333)
T KOG0991|consen 207 DMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDIITTLFRVVKNM 285 (333)
T ss_pred hHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 66666655544321 11 1466666677776555 47799999999999999999988776666655443
Q ss_pred CChHHHH--HHHHHh
Q 006615 290 GFIQGAN--EFLREM 302 (638)
Q Consensus 290 g~~~~a~--~~~~~~ 302 (638)
. +.+-. ++++++
T Consensus 286 ~-~~E~~rlE~ikei 299 (333)
T KOG0991|consen 286 D-VAESLRLEFIKEI 299 (333)
T ss_pred c-HHHHHHHHHHHHH
Confidence 3 44443 445544
No 382
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=42.07 E-value=3.3e+02 Score=26.29 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=23.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 006615 193 ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234 (638)
Q Consensus 193 ~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 234 (638)
++++.|...++.|.-++|..+.-.+...=.+.++..+++.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 455555555555555555555555555555555555555554
No 383
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=41.31 E-value=3.7e+02 Score=29.64 Aligned_cols=75 Identities=11% Similarity=0.068 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCC---C----------ccCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 006615 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR---I----------KRTSKQYLILVEGFVGVERFDEAKSLLNEM 268 (638)
Q Consensus 202 g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g---~----------~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 268 (638)
|+..+......++... .|++..|..+++++...| + ..+......|++++.+ ++...++.+++++
T Consensus 195 gi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~-~d~~~al~~l~~L 271 (709)
T PRK08691 195 KIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN-QDGAALLAKAQEM 271 (709)
T ss_pred CCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 4444544444444433 355555555554433211 1 1122334445555555 7788888888888
Q ss_pred HhCCCCCCHHH
Q 006615 269 RDDGKFPGRAM 279 (638)
Q Consensus 269 ~~~g~~p~~~~ 279 (638)
...|+.+....
T Consensus 272 ~~~G~d~~~~l 282 (709)
T PRK08691 272 AACAVGFDNAL 282 (709)
T ss_pred HHhCCCHHHHH
Confidence 88887766544
No 384
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.16 E-value=2.6e+02 Score=24.95 Aligned_cols=133 Identities=9% Similarity=0.005 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHcccCCHHHHHHHHHhchhccCCCcchhH-HHH
Q 006615 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLI--IDFYGISKKADAALKAFHDDRTLCGPISKFKL-MLL 482 (638)
Q Consensus 406 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~l--i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~ 482 (638)
+..|..++.... .+.. +......++......-.-.++.+| -..+...+++++|...++...... .+.+. ..+
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t---~De~lk~l~ 128 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQT---KDENLKALA 128 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccc---hhHHHHHHH
Confidence 334555555553 3333 444445555554322122233332 356678889999998888654321 11111 122
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545 (638)
Q Consensus 483 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~ 545 (638)
--.|-......|.+++|+.+++.....+..+ .....--+.+...|+-++|..-|+.....+
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3345566778899999999988776643321 112223357888899999999999888765
No 385
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=40.69 E-value=1.7e+02 Score=22.75 Aligned_cols=77 Identities=23% Similarity=0.194 Sum_probs=43.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHH
Q 006615 187 KNFEAVETFRQVIDEGAIPNSRTYTVM--IEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSL 264 (638)
Q Consensus 187 ~~~~A~~~~~~m~~~g~~p~~~ty~~l--i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 264 (638)
..++|..+-+-+...+ +..-..+| +..+...|++++|..+.+.+. .||...|-+|-. .+.|.-+++..-
T Consensus 20 cHqEA~tIAdwL~~~~---~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~r 90 (115)
T TIGR02508 20 CHQEANTIADWLHLKG---ESEEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESR 90 (115)
T ss_pred HHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHH
Confidence 3455555555554432 11112222 334567788888887777664 677777776543 345666666666
Q ss_pred HHHHHhCC
Q 006615 265 LNEMRDDG 272 (638)
Q Consensus 265 ~~~m~~~g 272 (638)
+.+|...|
T Consensus 91 l~rla~sg 98 (115)
T TIGR02508 91 LNRLAASG 98 (115)
T ss_pred HHHHHhCC
Confidence 66665554
No 386
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=40.47 E-value=2e+02 Score=27.74 Aligned_cols=112 Identities=10% Similarity=0.123 Sum_probs=64.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 006615 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG 221 (638)
Q Consensus 142 ~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 221 (638)
.++..+.+.+++....+.+..+.. +..-...+..+...|++..|++++.+..+. +. +..-|+.+=..- .
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~L~---~ 171 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRHLS---S 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHHHh---H
Confidence 456666777777777777777654 445566777788889999999988887763 10 101111111100 1
Q ss_pred CHHHHHHHHHhcccCC-----CccCHhHHHHHHHHHHccCCHHHHHHH
Q 006615 222 KLDSALEVFSALPLMR-----IKRTSKQYLILVEGFVGVERFDEAKSL 264 (638)
Q Consensus 222 ~~~~A~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~A~~l 264 (638)
++++-....+++.+.. ..-|...|..++.+|.-.|+...+.+-
T Consensus 172 ~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dk 219 (291)
T PF10475_consen 172 QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDK 219 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHH
Confidence 1222222222221110 135778899999999888877665543
No 387
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=39.99 E-value=83 Score=33.85 Aligned_cols=29 Identities=28% Similarity=0.229 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006615 255 VERFDEAKSLLNEMRDDGKFPGRAMRVAL 283 (638)
Q Consensus 255 ~g~~~~A~~l~~~m~~~g~~p~~~~~~ll 283 (638)
.|++.+|.+.+-.+...+..|...+..++
T Consensus 508 ~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL 536 (566)
T PF07575_consen 508 EGDFREAASLLVSLLKSPIAPKSFWPLLL 536 (566)
T ss_dssp -----------------------------
T ss_pred hhhHHHHHHHHHHHHCCCCCcHHHHHHHH
Confidence 47778888888788888888877766544
No 388
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=39.74 E-value=1.5e+02 Score=25.07 Aligned_cols=62 Identities=8% Similarity=0.100 Sum_probs=31.9
Q ss_pred HHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC
Q 006615 124 LIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186 (638)
Q Consensus 124 l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 186 (638)
+.+.+.+.|..++.. -..+++.+.+.++.-.|.++++++.+.+...+..|----++.+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334455555555444 34556666666555666666666666553333333222334444433
No 389
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=39.66 E-value=2e+02 Score=30.85 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=50.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCHHhHHHHHHHHHhcCChH------HHHHHHHHHHHcCCCCCHHHHHHH
Q 006615 142 NLMQWYSTSGDLELVLSTWNEYRQRA--KLLSTESYNIVMSVYAKTGKNF------EAVETFRQVIDEGAIPNSRTYTVM 213 (638)
Q Consensus 142 ~ll~~~~~~g~~~~A~~l~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~ty~~l 213 (638)
+|..+|...|++-.+.++++.....+ -+.=...||..|+...+.|.++ .|.+++++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78888888888888888888876542 2223556888888888888764 3334444333 44577777777
Q ss_pred HHHHHH
Q 006615 214 IEHLVN 219 (638)
Q Consensus 214 i~~~~~ 219 (638)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665443
No 390
>PRK13342 recombination factor protein RarA; Reviewed
Probab=39.26 E-value=4.4e+02 Score=26.98 Aligned_cols=55 Identities=9% Similarity=-0.055 Sum_probs=29.8
Q ss_pred cCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCC-----HHHHHHHHHHHHhCCCC
Q 006615 220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER-----FDEAKSLLNEMRDDGKF 274 (638)
Q Consensus 220 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-----~~~A~~l~~~m~~~g~~ 274 (638)
.++.+.|..++..|.+.|..|....-..++.++-..|. ..-|...++-...-|..
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~p 302 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMP 302 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCc
Confidence 36677777777777777766665554444444444432 22333444444445543
No 391
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.80 E-value=5.8e+02 Score=28.21 Aligned_cols=102 Identities=14% Similarity=0.156 Sum_probs=54.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC---CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 006615 144 MQWYSTSGDLELVLSTWNEYRQRAKLL---STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220 (638)
Q Consensus 144 l~~~~~~g~~~~A~~l~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 220 (638)
++++.+.+.+++|+.+.+..... .| -...+...|..+.-.|++++|-...-.|... +..-|.--+.-+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 56667777777777666544322 22 2345666777777777777777777666653 344444444444444
Q ss_pred CCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHc
Q 006615 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254 (638)
Q Consensus 221 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 254 (638)
++.... +.-++...-..+...|..++..+..
T Consensus 437 ~~l~~I---a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDI---APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchh---hccCCCCCcccCchHHHHHHHHHHH
Confidence 443322 2223322112344456655555554
No 392
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=37.75 E-value=4.4e+02 Score=26.59 Aligned_cols=57 Identities=16% Similarity=0.092 Sum_probs=41.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHH--hHHHHHHHHH--hcCChHHHHHHHHHHHHc
Q 006615 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTE--SYNIVMSVYA--KTGKNFEAVETFRQVIDE 201 (638)
Q Consensus 144 l~~~~~~g~~~~A~~l~~~m~~~~~~p~~~--~~~~li~~~~--~~g~~~~A~~~~~~m~~~ 201 (638)
+..+.+.+++..|.++|+++..+ ++++.. .|..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455888999999999999887 555554 4455555543 466788999999887764
No 393
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=37.32 E-value=3e+02 Score=24.49 Aligned_cols=94 Identities=15% Similarity=0.216 Sum_probs=64.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 006615 519 SGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598 (638)
Q Consensus 519 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 598 (638)
-+++-.|-+.-++.++.++++.|.+..+.-+. | .|+ ....+..+--..-|.-...+.+.|.+|-|..++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~-----L-KGL---~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTS-----L-KGL---TGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----c-cCc---cCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 46777888888999999999999876543221 1 000 00122233344557778889999999999999985
Q ss_pred HHHccCCCCcccccceeeeeccccchhccc
Q 006615 599 CEKINDVPSLALRGHIWAVSSADLTRVHSI 628 (638)
Q Consensus 599 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 628 (638)
.....+...|....-|....+|.
T Consensus 207 -------seWii~t~lWPCdr~DVlnRhnl 229 (233)
T PF14669_consen 207 -------SEWIISTPLWPCDRADVLNRHNL 229 (233)
T ss_pred -------cceeecCCCCCCcHHHHHHHhhh
Confidence 44577778888877776655553
No 394
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=37.13 E-value=1.8e+02 Score=21.94 Aligned_cols=67 Identities=13% Similarity=-0.008 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHH
Q 006615 425 VDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAIN 501 (638)
Q Consensus 425 a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 501 (638)
+.++++.+.++|+- +......+-.+-...|+.+.|.+++..+. . .| ..|...+.++-..|.-.-|.+
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r-----g~---~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-Q-----KE---GWFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-c-----CC---cHHHHHHHHHHHcCchhhhhc
Confidence 55677777777754 44444444444456678888888888865 2 22 367778888887777665543
No 395
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=37.12 E-value=33 Score=28.14 Aligned_cols=26 Identities=4% Similarity=0.028 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHhCCCCCchHhHHHHHH
Q 006615 118 NHELKTLIGDISSSKFLNVSVNFMNLMQ 145 (638)
Q Consensus 118 ~~~a~~l~~~~~~~~~~~~~~~~~~ll~ 145 (638)
-.+|..+|..|.+.|-+||. |+.|+.
T Consensus 111 k~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 111 KTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred CCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 34444444444444444443 444443
No 396
>PHA02875 ankyrin repeat protein; Provisional
Probab=36.44 E-value=4.8e+02 Score=26.56 Aligned_cols=25 Identities=4% Similarity=0.101 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHH
Q 006615 532 KIVQKLFSMVRQNGVEPDAYMFKVLI 557 (638)
Q Consensus 532 ~~a~~l~~~m~~~~~~p~~~~~~~li 557 (638)
++..+-++.|+...+.. ...|..++
T Consensus 297 ~~C~~ei~~mk~~~i~~-~s~~di~~ 321 (413)
T PHA02875 297 EKCIIELRRIKSEKIGK-KNILDLCI 321 (413)
T ss_pred HHHHHHHHHHHhhccCc-eeHHHHHh
Confidence 34555566777655442 33444333
No 397
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=35.94 E-value=1.9e+02 Score=21.77 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=18.8
Q ss_pred HHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 006615 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268 (638)
Q Consensus 228 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 268 (638)
++|+-....|+..|...|..+++.+.-+=-++...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44444444555555555554444444333344444444444
No 398
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=35.55 E-value=1e+02 Score=33.33 Aligned_cols=138 Identities=14% Similarity=0.162 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHcCCCC---CHHHHHHHHHHHcccCCHHHHHHHHHhchhccC---CCcchhHHHHHHHHHHHHHccCChH
Q 006615 424 LVDRLIAKLRSDGMRL---PFSTIRLIIDFYGISKKADAALKAFHDDRTLCG---PISKFKLMLLYSSLLRTLTKCKRDF 497 (638)
Q Consensus 424 ~a~~l~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~ 497 (638)
+-..++++|+.+--.| ...+...++-.|....+++...++.+.++.... ....++....|.-.++-=-+-|+-+
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRa 260 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRA 260 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHH
Confidence 3445566666543333 345666677777777778877777777665321 0111111112222222223446666
Q ss_pred HHHHHHHHHHhC--CCCcchhhHHHH-------HHHHHccCCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHHH
Q 006615 498 DAINVLEEMIFS--GIVPDVQTFSGL-------MYHFALQGDEKIVQKLFSMVRQNGVEPDA---YMFKVLIQAYCKY 563 (638)
Q Consensus 498 ~A~~l~~~m~~~--g~~p~~~t~~~l-------i~~~~~~g~~~~a~~l~~~m~~~~~~p~~---~~~~~li~~~~~~ 563 (638)
+|+.+.-.|.+. .+.||..+...= -+.|-..+..+.|.+-|++.-+ ++|+. .-+..|+.+-++.
T Consensus 261 kAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~ 336 (1226)
T KOG4279|consen 261 KALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEH 336 (1226)
T ss_pred HHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhh
Confidence 777766555542 356666543211 1234445556677777776654 45543 3455666666655
No 399
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=35.47 E-value=4.8e+02 Score=29.16 Aligned_cols=32 Identities=13% Similarity=0.037 Sum_probs=17.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 006615 245 YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR 277 (638)
Q Consensus 245 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 277 (638)
...++.++.. +++.+++.+++++...|..+..
T Consensus 249 i~~ll~aL~~-~d~~~~l~~~~~l~~~g~~~~~ 280 (830)
T PRK07003 249 MVRLLDALAA-GDGPEILAVADEMALRSLSFST 280 (830)
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHHH
Confidence 3344443333 6666666666666666655543
No 400
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=35.34 E-value=1.9e+02 Score=21.65 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=38.4
Q ss_pred HHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHH
Q 006615 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEA 191 (638)
Q Consensus 122 ~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 191 (638)
..+++.+.+.|+-... ..-..-+...+.+.|.++++.+..+| ..+|..+.+++-..|...-|
T Consensus 19 ~~v~~~L~~~~Vlt~~----~~e~I~~~~tr~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVFTPD----MIEEIQAAGSRRDQARQLLIDLETRG----KQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCCCHH----HHHHHHcCCCHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCchHHH
Confidence 3466666666643322 11222234456778888888888888 77788888887776654433
No 401
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=35.19 E-value=3.7e+02 Score=24.95 Aligned_cols=64 Identities=8% Similarity=-0.062 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHH-HHHHccCCHHHHHHHHHHHH
Q 006615 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM-YHFALQGDEKIVQKLFSMVR 542 (638)
Q Consensus 477 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li-~~~~~~g~~~~a~~l~~~m~ 542 (638)
|..+.-|+.-+..+.+..+++.+.+--.+.++ +.||.+-=...+ .++.....+++|+..+.+..
T Consensus 41 P~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 41 PTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAY 105 (284)
T ss_pred CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 33334555556666666666666555555544 355554433333 34445556666666665553
No 402
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=34.79 E-value=4.1e+02 Score=25.63 Aligned_cols=110 Identities=20% Similarity=0.206 Sum_probs=62.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC
Q 006615 108 LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187 (638)
Q Consensus 108 li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 187 (638)
++....+.++.......+..+.. ...-...++.+...|++..|+++..+..+.- . +..-|+.+=.. ..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L---~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHL---SSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHH---hHH
Confidence 44444555555555555555543 2224456788889999999999998876531 0 01111111111 112
Q ss_pred hHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006615 188 NFEAVETFRQVIDEG-----AIPNSRTYTVMIEHLVNLGKLDSALE 228 (638)
Q Consensus 188 ~~~A~~~~~~m~~~g-----~~p~~~ty~~li~~~~~~g~~~~A~~ 228 (638)
+++-....+++.+.. ..-|+..|..++.+|.-.|+...+.+
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHH
Confidence 333333333333211 13588899999999999998766543
No 403
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=34.44 E-value=1.8e+02 Score=21.02 Aligned_cols=63 Identities=14% Similarity=0.242 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHH-hhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcc
Q 006615 530 DEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY-LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIN 603 (638)
Q Consensus 530 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~-m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 603 (638)
+.+.|..++..+.... +-+...||++-..+.++ ..-..+.||..+. |....|.+-|++|...+
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RHkF~iskl~pd~~~L----------G~L~~aL~ey~~~~g~~ 75 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRHKFQISKLQPDENIL----------GELAAALEEYKKMVGAD 75 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHccchhhhcCccHHHH----------HHHHHHHHHHHHHcCCC
Confidence 3466666666666432 34566777777777766 5555667877665 55666667777765544
No 404
>PRK09857 putative transposase; Provisional
Probab=34.26 E-value=3.3e+02 Score=26.34 Aligned_cols=66 Identities=8% Similarity=0.062 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 006615 210 YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG 276 (638)
Q Consensus 210 y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 276 (638)
+.+++......|+.++..++++.+.+. .........++..-+.+.|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 455665555666666666666655443 122222333445555556666677788888888777754
No 405
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.12 E-value=5.7e+02 Score=26.77 Aligned_cols=35 Identities=11% Similarity=0.132 Sum_probs=18.7
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 006615 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206 (638)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 206 (638)
...+..++.+....+....|+.++.+|.+.|..|.
T Consensus 248 ~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 248 IEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 33344444444444444566666666666665544
No 406
>PF13934 ELYS: Nuclear pore complex assembly
Probab=33.65 E-value=3.8e+02 Score=24.65 Aligned_cols=104 Identities=14% Similarity=0.169 Sum_probs=47.6
Q ss_pred HHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006615 140 FMNLMQWYSTS--GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217 (638)
Q Consensus 140 ~~~ll~~~~~~--g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~ 217 (638)
|..++++|... +++++|.+.+ ....+.|+-. .-++.++...|+.+.|+.+++.+.-.. .+...-..++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L---~~ps~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~- 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELL---SHPSLIPWFP--DKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHh---CCCCCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-
Confidence 44455555433 4555555544 2222222211 135566666677776666666543211 112222222333
Q ss_pred HHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHc
Q 006615 218 VNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254 (638)
Q Consensus 218 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 254 (638)
..++.+.+|..+-+...+. -....+..++..+..
T Consensus 151 La~~~v~EAf~~~R~~~~~---~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDE---LRRRLFEQLLEHCLE 184 (226)
T ss_pred HHcCCHHHHHHHHHhCchh---hhHHHHHHHHHHHHH
Confidence 4556667776665554431 112345555555443
No 407
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=33.53 E-value=4.6e+02 Score=25.49 Aligned_cols=117 Identities=9% Similarity=0.086 Sum_probs=70.8
Q ss_pred HHHHHHhcCC---HHHHHHHHHHHHhcCC----CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006615 143 LMQWYSTSGD---LELVLSTWNEYRQRAK----LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215 (638)
Q Consensus 143 ll~~~~~~g~---~~~A~~l~~~m~~~~~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~ 215 (638)
++...| |+ .+.|.+.|+.....+. ..+......++...++.|+.+....+++..... ++..--..++.
T Consensus 135 ~~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~ 209 (324)
T PF11838_consen 135 LLSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLS 209 (324)
T ss_dssp HHHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHH
T ss_pred HHHHhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHH
Confidence 345545 54 4677888888877422 345666777788888888866655555555543 46777888999
Q ss_pred HHHHcCCHHHHHHHHHhcccCC-CccCHhHHHHHHHHHHccCC--HHHHHHHHH
Q 006615 216 HLVNLGKLDSALEVFSALPLMR-IKRTSKQYLILVEGFVGVER--FDEAKSLLN 266 (638)
Q Consensus 216 ~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~--~~~A~~l~~ 266 (638)
+.+-..+.+...++++.....+ ++ +...+. ++.++...+. .+.+.+.+.
T Consensus 210 aLa~~~d~~~~~~~l~~~l~~~~v~-~~d~~~-~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 210 ALACSPDPELLKRLLDLLLSNDKVR-SQDIRY-VLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHTT-S-HHHHHHHHHHHHCTSTS--TTTHHH-HHHHHH-CSTTCHHHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHcCCcccc-cHHHHH-HHHHHhcCChhhHHHHHHHHH
Confidence 9988899988889998888754 43 333333 4445543333 356665554
No 408
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=32.71 E-value=1.2e+02 Score=21.49 Aligned_cols=28 Identities=14% Similarity=0.074 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 006615 140 FMNLMQWYSTSGDLELVLSTWNEYRQRA 167 (638)
Q Consensus 140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~ 167 (638)
++.++..+++..-.++++..+++..+.|
T Consensus 11 ~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 11 SNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4444444444444444444444444444
No 409
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=31.78 E-value=3.7e+02 Score=23.94 Aligned_cols=59 Identities=12% Similarity=0.046 Sum_probs=31.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHHhHHHHHH-HHHhcCC--hHHHHHHHHHHHHc
Q 006615 143 LMQWYSTSGDLELVLSTWNEYRQR--AKLLSTESYNIVMS-VYAKTGK--NFEAVETFRQVIDE 201 (638)
Q Consensus 143 ll~~~~~~g~~~~A~~l~~~m~~~--~~~p~~~~~~~li~-~~~~~g~--~~~A~~~~~~m~~~ 201 (638)
.+-.....|++++|..-++++.+. .++.-...|+.+.. ++|..+. +-+|.-++.-....
T Consensus 35 ~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 35 EAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 344455667777777776665432 01111344666665 5665553 44555555555443
No 410
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=31.53 E-value=3.2e+02 Score=26.54 Aligned_cols=116 Identities=9% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 006615 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSA 232 (638)
Q Consensus 153 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~ 232 (638)
+.+|.++|++..+.+ ..+|+ ++.....--...+.+.+++...-.+.-.-|.-+..+.|+..+|.+.|+.
T Consensus 232 i~~AE~l~k~ALka~----e~~yr-------~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RD 300 (556)
T KOG3807|consen 232 IVDAERLFKQALKAG----ETIYR-------QSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRD 300 (556)
T ss_pred HHHHHHHHHHHHHHH----HHHHh-------hHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q ss_pred ccc-CCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 006615 233 LPL-MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM 279 (638)
Q Consensus 233 m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 279 (638)
+.+ ..+..-..+...||.++....-+.+...++.+..+-...-...+
T Consensus 301 L~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~i 348 (556)
T KOG3807|consen 301 LMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAI 348 (556)
T ss_pred HhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHH
No 411
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=31.43 E-value=1.8e+02 Score=20.23 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=21.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----HHcCCHHHHHHH
Q 006615 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL-----VNLGKLDSALEV 229 (638)
Q Consensus 184 ~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~-----~~~g~~~~A~~~ 229 (638)
..|++-+|.++++++=...-.|....+..||... .+.|+...|.++
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 4456666666666654432222344444444432 244555555544
No 412
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=31.32 E-value=3e+02 Score=22.62 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=25.2
Q ss_pred ChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCch
Q 006615 81 NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVS 137 (638)
Q Consensus 81 ~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~ 137 (638)
++.-|.+++.+....+ .+...++.+....---.+.++..++....-.|..
T Consensus 4 Np~IA~~~l~~l~~s~-------~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~e 53 (126)
T PF10155_consen 4 NPNIAIEILVKLINSP-------NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQE 53 (126)
T ss_pred cHHHHHHHHHHHcCCc-------hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHH
Confidence 4444555555554332 1444555555555555555666665554434433
No 413
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=31.27 E-value=88 Score=31.92 Aligned_cols=72 Identities=14% Similarity=0.018 Sum_probs=32.4
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCcc-hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHH
Q 006615 488 RTLTKCKRDFDAINVLEEMIFSGIVPD-VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY 563 (638)
Q Consensus 488 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 563 (638)
.++.+.+++..|+.=+...++.. |+ ...|--=-.++.+.+.+.+|...|+.... +.|+..-....+.-|-+.
T Consensus 46 ~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 46 LAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEFKKALLDLEKVKK--LAPNDPDATRKIDECNKI 118 (476)
T ss_pred hhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHHHHHHHHHHHhhh--cCcCcHHHHHHHHHHHHH
Confidence 45555555555555555554432 21 11121112233333444444444444443 455555555555555544
No 414
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.95 E-value=6.7e+02 Score=26.60 Aligned_cols=87 Identities=7% Similarity=-0.073 Sum_probs=54.3
Q ss_pred HHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 006615 506 MIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWK 585 (638)
Q Consensus 506 m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~ 585 (638)
+.+.|+..+......++... .|++..|..+++++...| ...+|...+-..+ | .++....-.|++++..
T Consensus 191 l~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~--~~~It~~~V~~~l-------g-~~~~~~i~~ll~al~~ 258 (509)
T PRK14958 191 LKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYG--NGKVLIADVKTML-------G-TIEPLLLFDILEALAA 258 (509)
T ss_pred HHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcC--CCCcCHHHHHHHH-------C-CCCHHHHHHHHHHHHc
Confidence 34567666666666555543 588888988888877654 1233333332222 2 3444444556666665
Q ss_pred cCcHHHHHHHHHHHHHccCC
Q 006615 586 EGRRKEAAAVEERCEKINDV 605 (638)
Q Consensus 586 ~g~~~~A~~~~~~~~~~~~~ 605 (638)
|+.+.+.++++.+.+.|..
T Consensus 259 -~d~~~~l~~~~~l~~~g~~ 277 (509)
T PRK14958 259 -KAGDRLLGCVTRLVEQGVD 277 (509)
T ss_pred -CCHHHHHHHHHHHHHcCCC
Confidence 7888889999998888763
No 415
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=30.76 E-value=5e+02 Score=25.11 Aligned_cols=59 Identities=15% Similarity=0.190 Sum_probs=49.6
Q ss_pred HHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHH
Q 006615 500 INVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY 563 (638)
Q Consensus 500 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 563 (638)
.++++.|.+.++.|.-..|.-+.-.+.+.=.+.+++.+|+.+.. |..-|..|+..||..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsm 321 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSM 321 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHH
Confidence 67888899999999999988888888888889999999999886 333388888888876
No 416
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.67 E-value=6.8e+02 Score=26.57 Aligned_cols=81 Identities=11% Similarity=0.107 Sum_probs=49.6
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCC---C----------ccCHhHHHHHHHHHHccCCHHHHHHHHH
Q 006615 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR---I----------KRTSKQYLILVEGFVGVERFDEAKSLLN 266 (638)
Q Consensus 200 ~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g---~----------~p~~~~~~~li~~~~~~g~~~~A~~l~~ 266 (638)
+.|+..+......++... .|++..|..++++....| + .++......|++++.. |+.+.++.+++
T Consensus 193 ~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~-~d~~~~l~~~~ 269 (509)
T PRK14958 193 EENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA-KAGDRLLGCVT 269 (509)
T ss_pred HcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 345555555555444432 466666666665543322 1 1233344456665555 88999999999
Q ss_pred HHHhCCCCCCHHHHHHH
Q 006615 267 EMRDDGKFPGRAMRVAL 283 (638)
Q Consensus 267 ~m~~~g~~p~~~~~~ll 283 (638)
+|...|..|......++
T Consensus 270 ~l~~~g~~~~~il~~l~ 286 (509)
T PRK14958 270 RLVEQGVDFSNALADLL 286 (509)
T ss_pred HHHHcCCCHHHHHHHHH
Confidence 99999999876655444
No 417
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=30.55 E-value=4.2e+02 Score=24.19 Aligned_cols=161 Identities=11% Similarity=0.113 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH-
Q 006615 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVY- 182 (638)
Q Consensus 104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~- 182 (638)
+||.+---+...|+++.|.+.|+...+....-+-...|.-|. +--.|++.-|.+=|...-+.+ | ..-|.+|---+
T Consensus 101 vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D--~-~DPfR~LWLYl~ 176 (297)
T COG4785 101 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDD--P-NDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcC--C-CChHHHHHHHHH
Confidence 677666667777888888888887776542222222222222 224467777766665554443 1 11222222111
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCC------ccCHhHHHHHHHHHHccC
Q 006615 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRI------KRTSKQYLILVEGFVGVE 256 (638)
Q Consensus 183 ~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~------~p~~~~~~~li~~~~~~g 256 (638)
-+.-++.+|..-+.+--+ | .|..-|.+.|-.|.- |++. .+.+++.+....- +.=+.||--|..-+...|
T Consensus 177 E~k~dP~~A~tnL~qR~~-~--~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 177 EQKLDPKQAKTNLKQRAE-K--SDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred HhhCCHHHHHHHHHHHHH-h--ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 223455555443332222 1 233344433322211 1111 1122222221100 112346777777788888
Q ss_pred CHHHHHHHHHHHHhCCC
Q 006615 257 RFDEAKSLLNEMRDDGK 273 (638)
Q Consensus 257 ~~~~A~~l~~~m~~~g~ 273 (638)
+.++|..+|+-.....+
T Consensus 252 ~~~~A~~LfKLaiannV 268 (297)
T COG4785 252 DLDEATALFKLAVANNV 268 (297)
T ss_pred cHHHHHHHHHHHHHHhH
Confidence 88888888887765443
No 418
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=30.46 E-value=1e+02 Score=21.80 Aligned_cols=49 Identities=10% Similarity=0.134 Sum_probs=27.4
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 006615 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219 (638)
Q Consensus 170 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~ 219 (638)
|....++.++..+++..-.++++..+.+..+.|. .+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666654 245555555555444
No 419
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.17 E-value=6.2e+02 Score=26.78 Aligned_cols=31 Identities=10% Similarity=0.132 Sum_probs=21.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCcc
Q 006615 483 YSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD 514 (638)
Q Consensus 483 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 514 (638)
...++.++ ..++.++|+.+++++...|..|.
T Consensus 245 if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 245 LRGIAAAL-AQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 34445544 44788888888888888876554
No 420
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=30.03 E-value=1.8e+02 Score=22.12 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=15.1
Q ss_pred HHHHHHccCChHHHHHHHHHHHh
Q 006615 486 LLRTLTKCKRDFDAINVLEEMIF 508 (638)
Q Consensus 486 li~~~~~~g~~~~A~~l~~~m~~ 508 (638)
+.......|+.++|.+.+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 34455566777777777777654
No 421
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=29.22 E-value=2.7e+02 Score=24.18 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=29.3
Q ss_pred HhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 006615 164 RQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223 (638)
Q Consensus 164 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 223 (638)
...|+..+ ..--.++..+...++.-.|.++++.+.+.+..++..|.--.|..+.+.|-+
T Consensus 18 ~~~GlR~T-~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLT-PQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCC-HHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 34444432 223344444444455556666666666665555544444444555555543
No 422
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=29.15 E-value=6.3e+02 Score=26.75 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=15.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH
Q 006615 185 TGKNFEAVETFRQVIDEGAIPNS 207 (638)
Q Consensus 185 ~g~~~~A~~~~~~m~~~g~~p~~ 207 (638)
.++..+++..++++.+.|..|..
T Consensus 258 ~~d~~~~~~~~~~l~~~G~~~~~ 280 (515)
T COG2812 258 KGDAKEALRLINELIEEGKDPEA 280 (515)
T ss_pred ccCHHHHHHHHHHHHHhCcCHHH
Confidence 46777777777777777766553
No 423
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.13 E-value=7.9e+02 Score=26.84 Aligned_cols=35 Identities=17% Similarity=0.148 Sum_probs=25.3
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 006615 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206 (638)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 206 (638)
+......++.++.. |+...+++++++|.+.|..|.
T Consensus 250 ~~~~i~~LldaL~~-~d~~~al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 250 DRSHVFRLIDALAQ-GDGRTVVETADELRLNGLSAA 284 (618)
T ss_pred CHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 34455566666655 788899999999988877654
No 424
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.73 E-value=1.3e+02 Score=33.24 Aligned_cols=156 Identities=10% Similarity=0.065 Sum_probs=80.6
Q ss_pred HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG 151 (638)
Q Consensus 72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g 151 (638)
+|.-|.+.|-++-|+.+.+.=+.+. ..+...|+++.|.+.-..+ .+..+|..|...-.+.|
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~qg 686 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQG 686 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhc
Confidence 5666777777777776655433221 1234567777665544332 34556777777777778
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006615 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231 (638)
Q Consensus 152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~ 231 (638)
+.+-|...|++.+.- +-|--.|.-.|+.++-.++-+....+ -|..+- .. .-.-.|++++-.+++.
T Consensus 687 n~~IaEm~yQ~~knf---------ekLsfLYliTgn~eKL~Km~~iae~r---~D~~~~-~q--nalYl~dv~ervkIl~ 751 (1202)
T KOG0292|consen 687 NHQIAEMCYQRTKNF---------EKLSFLYLITGNLEKLSKMMKIAEIR---NDATGQ-FQ--NALYLGDVKERVKILE 751 (1202)
T ss_pred chHHHHHHHHHhhhh---------hheeEEEEEeCCHHHHHHHHHHHHhh---hhhHHH-HH--HHHHhccHHHHHHHHH
Confidence 777777777766543 22333344456666555444333222 121111 11 1112366666666665
Q ss_pred hcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270 (638)
Q Consensus 232 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 270 (638)
.-.. .| ..|- .-...|.-++|.++.++...
T Consensus 752 n~g~---~~--layl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 752 NGGQ---LP--LAYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred hcCc---cc--HHHH----HHhhcCcHHHHHHHHHhhcc
Confidence 5432 11 1121 12234556666666666644
No 425
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=28.47 E-value=2.6e+02 Score=24.31 Aligned_cols=45 Identities=7% Similarity=0.020 Sum_probs=19.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC
Q 006615 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187 (638)
Q Consensus 143 ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 187 (638)
++..+....+.-.|.++++.+.+.+...+..|----|..+.+.|-
T Consensus 31 IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 31 VLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 333333333344455555555544433334443333444444443
No 426
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=28.45 E-value=8.9e+02 Score=27.24 Aligned_cols=33 Identities=9% Similarity=-0.012 Sum_probs=20.7
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006615 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP 205 (638)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 205 (638)
......++.++.. ++..+++++++++...|+.+
T Consensus 246 ~~~i~~ll~aL~~-~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 246 QTYMVRLLDALAA-GDGPEILAVADEMALRSLSF 278 (830)
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCH
Confidence 4445555554444 67777777777777766654
No 427
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=28.41 E-value=4.9e+02 Score=24.26 Aligned_cols=22 Identities=9% Similarity=0.181 Sum_probs=14.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHh
Q 006615 249 VEGFVGVERFDEAKSLLNEMRD 270 (638)
Q Consensus 249 i~~~~~~g~~~~A~~l~~~m~~ 270 (638)
+-++.+.++.+.+..+.+-+.+
T Consensus 199 LLa~l~~~~~~~~~~iv~WL~~ 220 (246)
T PF07678_consen 199 LLALLKRGDLEEASPIVRWLIS 220 (246)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcccHHHHHHHHHHHHH
Confidence 3445555888888888777754
No 428
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=28.33 E-value=4.4e+02 Score=23.72 Aligned_cols=85 Identities=22% Similarity=0.312 Sum_probs=41.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHH-HH---HHHH
Q 006615 182 YAKTGKNFEAVETFRQVIDEGAIPN-----SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL-IL---VEGF 252 (638)
Q Consensus 182 ~~~~g~~~~A~~~~~~m~~~g~~p~-----~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~l---i~~~ 252 (638)
+.++|++++|..-|.+.... +++. ...|..-..+..+.+.++.|.+-.....+.+ | ||+ +| ..+|
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--p---ty~kAl~RRAeay 178 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--P---TYEKALERRAEAY 178 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--c---hhHHHHHHHHHHH
Confidence 34556666666666665553 1111 1112222234455566666655444444322 1 122 12 2356
Q ss_pred HccCCHHHHHHHHHHHHhCC
Q 006615 253 VGVERFDEAKSLLNEMRDDG 272 (638)
Q Consensus 253 ~~~g~~~~A~~l~~~m~~~g 272 (638)
.+...+++|++=|+++....
T Consensus 179 ek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhC
Confidence 66667777777777766544
No 429
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=28.20 E-value=8.5e+02 Score=26.96 Aligned_cols=34 Identities=0% Similarity=-0.104 Sum_probs=24.6
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 006615 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN 206 (638)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 206 (638)
......|+.++.+ ++...++.++++|...|+.+.
T Consensus 246 ~~~If~LldAL~~-~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 246 KQYLYELLTGIIN-QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence 3345566666655 788889999999988887654
No 430
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.12 E-value=9.4e+02 Score=27.43 Aligned_cols=191 Identities=13% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHcCC--CCCCChhHHHHHHHHHHhcCCh--HHHHHHHHHHHhCCCCCchHhHHH--
Q 006615 69 PFIVTHALRSAPNADSALSIMEALKSNP--NFSHNQSTLHALATVLAKSQRN--HELKTLIGDISSSKFLNVSVNFMN-- 142 (638)
Q Consensus 69 ~~~~~~~l~~~~~~~~Al~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~--~~a~~l~~~~~~~~~~~~~~~~~~-- 142 (638)
+..++..|...|+.++|++++......+ .-.--...+..++..+.+.+.. +...+.-++..+.........+..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Q ss_pred ----------HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 006615 143 ----------LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTV 212 (638)
Q Consensus 143 ----------ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~ 212 (638)
.+-.|......+-+...++.+....-.++..-.+.++..|++.=+- ...-..+|-.--..+|..
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~------~~~~~~kg~e~~E~~~re 660 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLE------QASTDGKGEEAPETTVRE 660 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhh------ccCchhccccchhhhHHH
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615 213 MIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDD 271 (638)
Q Consensus 213 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 271 (638)
-+..+....+.=....+++... .-.-.-..+++-+ +.|+-++|+.++-.....
T Consensus 661 kl~~~l~~s~~Y~p~~~L~~~~----~~~l~ee~aill~--rl~khe~aL~Iyv~~L~d 713 (877)
T KOG2063|consen 661 KLLDFLESSDLYDPQLLLERLN----GDELYEERAILLG--RLGKHEEALHIYVHELDD 713 (877)
T ss_pred HHHHHhhhhcccCcchhhhhcc----chhHHHHHHHHHh--hhhhHHHHHHHHHHHhcc
No 431
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=27.98 E-value=1.4e+03 Score=29.38 Aligned_cols=150 Identities=10% Similarity=0.021 Sum_probs=93.1
Q ss_pred HHHHcCCChhHHHHHHHHHHcCCCCCCChhH-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCC
Q 006615 74 HALRSAPNADSALSIMEALKSNPNFSHNQST-LHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD 152 (638)
Q Consensus 74 ~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 152 (638)
.+--+++.+.+|+..++.-.....-+-.... |..+...|+.-++++....+...-.. .|+. ..-+-.....|+
T Consensus 1391 ~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---CccH---HHHHHHHHhhcc
Confidence 3555778899999888874221111111223 34444488889999888877764221 2332 234555678899
Q ss_pred HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHH
Q 006615 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM-IEHLVNLGKLDSALEVFS 231 (638)
Q Consensus 153 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~l-i~~~~~~g~~~~A~~~~~ 231 (638)
+..|...|+++.+.+ ++...+++-++......|.++.+....+-.... ..+....++++ +.+--+.+++|..+....
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999999876 334677887887777778887777755554443 22233333332 333356777777766655
No 432
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=27.90 E-value=1.2e+02 Score=16.84 Aligned_cols=15 Identities=13% Similarity=0.262 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHHHhc
Q 006615 152 DLELVLSTWNEYRQR 166 (638)
Q Consensus 152 ~~~~A~~l~~~m~~~ 166 (638)
+.+.|..+|+++...
T Consensus 2 ~~~~~r~i~e~~l~~ 16 (33)
T smart00386 2 DIERARKIYERALEK 16 (33)
T ss_pred cHHHHHHHHHHHHHH
Confidence 445555555555443
No 433
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.88 E-value=8.1e+02 Score=26.74 Aligned_cols=78 Identities=10% Similarity=0.157 Sum_probs=47.4
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCC---C----------ccCHhHHHHHHHHHHccCCHHHHHHHHH
Q 006615 200 DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR---I----------KRTSKQYLILVEGFVGVERFDEAKSLLN 266 (638)
Q Consensus 200 ~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g---~----------~p~~~~~~~li~~~~~~g~~~~A~~l~~ 266 (638)
+.|+..+......++.. ..|++..+..++++....| + ..+......+++++.. |+...++++++
T Consensus 198 ~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~-~d~~~al~~l~ 274 (618)
T PRK14951 198 AENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ-GDGRTVVETAD 274 (618)
T ss_pred HcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 34666665555555542 2366666666665443222 1 1233344455665555 78999999999
Q ss_pred HHHhCCCCCCHHHH
Q 006615 267 EMRDDGKFPGRAMR 280 (638)
Q Consensus 267 ~m~~~g~~p~~~~~ 280 (638)
++...|..+....-
T Consensus 275 ~l~~~G~~~~~il~ 288 (618)
T PRK14951 275 ELRLNGLSAASTLE 288 (618)
T ss_pred HHHHcCCCHHHHHH
Confidence 99998888765543
No 434
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=27.55 E-value=5.1e+02 Score=24.13 Aligned_cols=117 Identities=13% Similarity=-0.000 Sum_probs=57.7
Q ss_pred CChhHHHHHHHHHhcCCCCcCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHcccCCHHHHH
Q 006615 384 KSPETAWHFFCWVAYQPGYTHDVYA-LEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR-LIIDFYGISKKADAAL 461 (638)
Q Consensus 384 ~~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~A~ 461 (638)
..++.|...|..... +.|+..+ |+.=+.++.+..+++.+..=.....+ +.||..--. .+-.+......+++|+
T Consensus 24 k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred hhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHH
Confidence 456667766665543 3455533 44555566666677766554444433 344443322 2334445556677777
Q ss_pred HHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHH
Q 006615 462 KAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEE 505 (638)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 505 (638)
..+.+........+.+.....+..|..+=-+.=...+..++.++
T Consensus 99 ~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 99 KVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 77766543322211111124555555544333344444444443
No 435
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=27.49 E-value=2.9e+02 Score=21.73 Aligned_cols=64 Identities=14% Similarity=0.163 Sum_probs=31.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHcc--CCHHHHHHHHHHHHhCCCCCCH
Q 006615 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV--ERFDEAKSLLNEMRDDGKFPGR 277 (638)
Q Consensus 212 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~p~~ 277 (638)
.++..|...|+.++|...+.++..... ... ....++...... ..-+.+..++..+...+..+..
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~~~~~-~~~-vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~ 72 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELKLPSQ-HHE-VVKVILECALEEKKSYREYYSKLLSHLCKRKLISKE 72 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT-GGG-HHH-HHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HH
T ss_pred HHHHHHhcCCCHHHHHHHHHHhCCCcc-HHH-HHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHH
Confidence 445566677778887777777642211 111 222333333333 2233455666666666655543
No 436
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=27.33 E-value=3.5e+02 Score=22.14 Aligned_cols=43 Identities=12% Similarity=-0.023 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHH
Q 006615 155 LVLSTWNEYRQRAKLLS-TESYNIVMSVYAKTGKNFEAVETFRQ 197 (638)
Q Consensus 155 ~A~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 197 (638)
.+.++|..|..+|+-.. ..-|......+...|++++|.++|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666666554332 23355555556666666666666653
No 437
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.30 E-value=9.4e+02 Score=27.15 Aligned_cols=84 Identities=15% Similarity=0.199 Sum_probs=47.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH----HHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHc
Q 006615 179 MSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI----EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG 254 (638)
Q Consensus 179 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 254 (638)
=..|...|++++|+++-+.- |+ ...+++ ..|...+++..|-+++.++. ..+..+.--+..
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~------p~--~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~--------~~FEEVaLKFl~ 428 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTR------PD--ALETVLLKQADFLFQDKEYLRAAEIYAETL--------SSFEEVALKFLE 428 (911)
T ss_pred HHHHHhcchHHHHHHhccCC------HH--HHHHHHHHHHHHHHhhhHHHHHHHHHHHhh--------hhHHHHHHHHHh
Confidence 34466678888887764332 33 333333 45667778888888888774 235555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHH
Q 006615 255 VERFDEAKSLLNEMRDDGKFPGRAM 279 (638)
Q Consensus 255 ~g~~~~A~~l~~~m~~~g~~p~~~~ 279 (638)
..+.+ +++.|-.=+-..+.|+..+
T Consensus 429 ~~~~~-~L~~~L~KKL~~lt~~dk~ 452 (911)
T KOG2034|consen 429 INQER-ALRTFLDKKLDRLTPEDKT 452 (911)
T ss_pred cCCHH-HHHHHHHHHHhhCChHHHH
Confidence 55555 5544433333345555433
No 438
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=27.17 E-value=8.5e+02 Score=26.60 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC-------hHHHHHHHHHHHHc
Q 006615 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK-------NFEAVETFRQVIDE 201 (638)
Q Consensus 142 ~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~ 201 (638)
++|-.|.|+|++++|.++..+.... .......+-..+..|+...+ -+....-|++..+.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 4666778889999988888555543 34445667777787776532 23455556655543
No 439
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=26.99 E-value=1.4e+03 Score=29.24 Aligned_cols=145 Identities=13% Similarity=0.138 Sum_probs=72.4
Q ss_pred HhcCChHHHHHHHHHHHhCCC--CCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHH
Q 006615 113 AKSQRNHELKTLIGDISSSKF--LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFE 190 (638)
Q Consensus 113 ~~~~~~~~a~~l~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 190 (638)
.+.+.+..|...++.-..... .-...-|-.+...|+.-+++|....+...-... | +...-|......|++..
T Consensus 1394 frc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~---~---sl~~qil~~e~~g~~~d 1467 (2382)
T KOG0890|consen 1394 FRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD---P---SLYQQILEHEASGNWAD 1467 (2382)
T ss_pred HhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC---c---cHHHHHHHHHhhccHHH
Confidence 345555555555555211000 011122333444777777777766666531111 1 23334455566677777
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHH-HHHHHccCCHHHHHHHHH
Q 006615 191 AVETFRQVIDEGAIPN-SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL-VEGFVGVERFDEAKSLLN 266 (638)
Q Consensus 191 A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~l~~ 266 (638)
|...|+++.+. .|+ ..+++-+++.....|.++.+.-..+-..... .+....|+++ +.+--+.++++.......
T Consensus 1468 a~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1468 AAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 77777777764 343 5566666666666666666665444433221 2222333332 233345555555555443
No 440
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.80 E-value=99 Score=22.69 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=24.5
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHccCCCC
Q 006615 579 LKKSLWKEGRRKEAAAVEERCEKINDVPS 607 (638)
Q Consensus 579 li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (638)
+++-+.++.-.++|.++++.|.+.|-..|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrGEi~~ 65 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRGEITP 65 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCCCH
Confidence 57778889999999999999999886443
No 441
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=26.68 E-value=3.8e+02 Score=22.38 Aligned_cols=21 Identities=5% Similarity=0.036 Sum_probs=11.6
Q ss_pred HHHHccCChHHHHHHHHHHHh
Q 006615 488 RTLTKCKRDFDAINVLEEMIF 508 (638)
Q Consensus 488 ~~~~~~g~~~~A~~l~~~m~~ 508 (638)
-++.+.++++.++++.+.+.+
T Consensus 79 vg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 79 VGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHHhhHHHHHHHHHHHHh
Confidence 345555555555555555554
No 442
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=26.41 E-value=9.8e+02 Score=27.05 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=23.7
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615 577 ELLKKSLWKEGRRKEAAAVEERCEKIND 604 (638)
Q Consensus 577 ~~li~~~~~~g~~~~A~~~~~~~~~~~~ 604 (638)
..|.......|+.++|...++++.....
T Consensus 622 ~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 622 SMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 3677888899999999999999887654
No 443
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=26.29 E-value=2.6e+02 Score=22.26 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=16.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC
Q 006615 143 LMQWYSTSGDLELVLSTWNEYRQRA 167 (638)
Q Consensus 143 ll~~~~~~g~~~~A~~l~~~m~~~~ 167 (638)
+++.+.+|...++|+++.+-|.++|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3555666777777777777777766
No 444
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=26.27 E-value=5.4e+02 Score=27.38 Aligned_cols=151 Identities=11% Similarity=0.060 Sum_probs=86.2
Q ss_pred CCChhHHHHHHHHHHhc--CChHHHHHHHHHHHhCCCCCchHhHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCCCHHhH
Q 006615 99 SHNQSTLHALATVLAKS--QRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS-TSGDLELVLSTWNEYRQRAKLLSTESY 175 (638)
Q Consensus 99 ~~~~~~~~~li~~~~~~--~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~~~A~~l~~~m~~~~~~p~~~~~ 175 (638)
-|+..+...++..+... ..-+.+-.++-.|.. ...|--.+.| +...|. ..|+...|...+.......-.-.-+..
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~-~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK-PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC-CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 45555555555444322 122333344444433 3334333333 233343 457888888877766543211122334
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHH
Q 006615 176 NIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253 (638)
Q Consensus 176 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 253 (638)
-.|.+.+.+.|...+|..++.+-.... ....-++-.+-++|.-..+++.|.+-|++..+.. ..+.++-+.|...-|
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 445566667777788888887777654 3356677788888888888888888888766543 234556666655444
No 445
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=25.82 E-value=2.5e+02 Score=22.16 Aligned_cols=21 Identities=24% Similarity=0.435 Sum_probs=11.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 006615 143 LMQWYSTSGDLELVLSTWNEY 163 (638)
Q Consensus 143 ll~~~~~~g~~~~A~~l~~~m 163 (638)
++.-|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 444555556666666666554
No 446
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=25.59 E-value=3e+02 Score=20.89 Aligned_cols=54 Identities=9% Similarity=-0.050 Sum_probs=32.7
Q ss_pred HccCChHHHHHHHHHH----HhCCCCcc--h--hhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615 491 TKCKRDFDAINVLEEM----IFSGIVPD--V--QTFSGLMYHFALQGDEKIVQKLFSMVRQN 544 (638)
Q Consensus 491 ~~~g~~~~A~~l~~~m----~~~g~~p~--~--~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 544 (638)
.+.|++..|.+-+.+. ...+..+. . ...-.+.......|+.++|.+.+++.++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4567777775544444 33332221 1 22223445667789999999999988753
No 447
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=25.44 E-value=6.2e+02 Score=24.46 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhcCChHHHH
Q 006615 407 YALEKMLTILARHGHVELVD 426 (638)
Q Consensus 407 ~~~~~li~~~~~~g~~~~a~ 426 (638)
.+|..|+.++|..|+.+..+
T Consensus 322 K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HhhhHHHHHHhcCChHHHHH
Confidence 45777888888888876553
No 448
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=25.24 E-value=6.1e+02 Score=24.29 Aligned_cols=118 Identities=8% Similarity=0.005 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccC
Q 006615 423 ELVDRLIAKLRSDG--------MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCK 494 (638)
Q Consensus 423 ~~a~~l~~~m~~~g--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 494 (638)
+..-.+++.+-+.| +..|...+|.|+. .+-++..++=+.+++............+|-.+..-|++.+
T Consensus 55 ~~maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~k-----kneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~ 129 (412)
T COG5187 55 KCMAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLK-----KNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIM 129 (412)
T ss_pred hhhhHHHHHHHhccCCcccchheehhhHHHHHHHH-----hhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHh
Q ss_pred ChHHHHHHHHHHHhC----CCCcchhhHHHHHH-HHHccCCHHHHHHHHHHHHhCC
Q 006615 495 RDFDAINVLEEMIFS----GIVPDVQTFSGLMY-HFALQGDEKIVQKLFSMVRQNG 545 (638)
Q Consensus 495 ~~~~A~~l~~~m~~~----g~~p~~~t~~~li~-~~~~~g~~~~a~~l~~~m~~~~ 545 (638)
+.+.+.+..++..+. |.+.|+..--+=+. .|....-+++-++..+.|.++|
T Consensus 130 D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkG 185 (412)
T COG5187 130 DIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKG 185 (412)
T ss_pred hhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
No 449
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=24.75 E-value=3.9e+02 Score=21.88 Aligned_cols=74 Identities=9% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcc-hhhHHHHHHHHHccCCHHHHH
Q 006615 457 ADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD-VQTFSGLMYHFALQGDEKIVQ 535 (638)
Q Consensus 457 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~ 535 (638)
++++.+.|.....- ..+|..+..|-..+..+ ++..++|..|..+|+--. +.-|.....-+-..|++.+|.
T Consensus 49 Lerc~~~f~~~~~Y---knD~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~ 119 (125)
T smart00777 49 LERCIRYFEDDERY---KNDPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKAD 119 (125)
T ss_pred HHHHHHHhhhhhhh---cCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHH
Q ss_pred HHHH
Q 006615 536 KLFS 539 (638)
Q Consensus 536 ~l~~ 539 (638)
++|+
T Consensus 120 ~iy~ 123 (125)
T smart00777 120 EVYQ 123 (125)
T ss_pred HHHH
No 450
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.67 E-value=8.5e+02 Score=25.78 Aligned_cols=88 Identities=14% Similarity=0.138 Sum_probs=50.2
Q ss_pred HHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCC--C----------ccCHhHHHHHHHHHHcc
Q 006615 189 FEAVETFRQVI-DEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR--I----------KRTSKQYLILVEGFVGV 255 (638)
Q Consensus 189 ~~A~~~~~~m~-~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g--~----------~p~~~~~~~li~~~~~~ 255 (638)
++..+.+.+.. +.|+..+......++... .|++..|...++.+...+ + .+.......+++++ ..
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~ 254 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQ 254 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-Hc
Confidence 33444444433 346655555555554433 366666665555543322 1 12223344466666 45
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHH
Q 006615 256 ERFDEAKSLLNEMRDDGKFPGRAM 279 (638)
Q Consensus 256 g~~~~A~~l~~~m~~~g~~p~~~~ 279 (638)
+++++|+.+++++...|..|....
T Consensus 255 ~d~~~Al~~l~~Ll~~G~~~~~Il 278 (504)
T PRK14963 255 GDAAEALSGAAQLYRDGFAARTLV 278 (504)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHH
Confidence 899999999999999997765443
No 451
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=24.57 E-value=1.9e+02 Score=31.08 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHcCChHHHHHHHHHhCcCcccc
Q 006615 287 QEMGFIQGANEFLREMLPDKRIK 309 (638)
Q Consensus 287 ~~~g~~~~a~~~~~~~~~~~~~~ 309 (638)
.+.|++.+|.+.+-.+......|
T Consensus 506 ~~~~~~~~Aa~~Lv~Ll~~~~~P 528 (566)
T PF07575_consen 506 YDEGDFREAASLLVSLLKSPIAP 528 (566)
T ss_dssp -----------------------
T ss_pred HhhhhHHHHHHHHHHHHCCCCCc
Confidence 34467777766665555444444
No 452
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=24.45 E-value=6.1e+02 Score=23.97 Aligned_cols=142 Identities=15% Similarity=0.031 Sum_probs=0.0
Q ss_pred hccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHcccCC
Q 006615 381 RHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD----GMRLPFSTIRLIIDFYGISKK 456 (638)
Q Consensus 381 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~~~~~~~~~li~~~~~~g~ 456 (638)
...+++++|++++..- ...+.+.|+...|-++-..+.+. +..+|......++..+...+.
T Consensus 1 v~~kky~eAidLL~~G----------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~ 64 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSG----------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPP 64 (260)
T ss_dssp HHTT-HHHHHHHHHHH----------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-T
T ss_pred CccccHHHHHHHHHHH----------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q ss_pred HH-HHHHHHHhchhcc-CCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHH
Q 006615 457 AD-AALKAFHDDRTLC-GPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIV 534 (638)
Q Consensus 457 ~~-~A~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 534 (638)
-+ +-.++.+.+.+=. ....+...+.....+...|.+.|++.+|+..|-.-.+ |+...+..++.-....|...++
T Consensus 65 ~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~----~~~~~~~~ll~~~~~~~~~~e~ 140 (260)
T PF04190_consen 65 EEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTD----PSAFAYVMLLEEWSTKGYPSEA 140 (260)
T ss_dssp T-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-H----HHHHHHHHHHHHHHHHTSS--H
T ss_pred CcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCC----hhHHHHHHHHHHHHHhcCCcch
Q ss_pred HHHHHHHH
Q 006615 535 QKLFSMVR 542 (638)
Q Consensus 535 ~~l~~~m~ 542 (638)
--+.-++.
T Consensus 141 dlfi~RaV 148 (260)
T PF04190_consen 141 DLFIARAV 148 (260)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
No 453
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=23.87 E-value=9.3e+02 Score=25.94 Aligned_cols=268 Identities=14% Similarity=0.129 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 006615 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQ 197 (638)
Q Consensus 118 ~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 197 (638)
.+...++.+.....--.+....|..|++.+... +.+.-.++++++.. .. ...+..++++....|-.....-+.+.
T Consensus 291 ~~~l~~L~~~~~~~~~~~~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~~---~~~r~~~~Dal~~~GT~~a~~~i~~~ 365 (574)
T smart00638 291 VEVLKHLVQDIASDVQEPAAAKFLRLVRLLRTL-SEEQLEQLWRQLYE-KK---KKARRIFLDAVAQAGTPPALKFIKQW 365 (574)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHhC-CHHHHHHHHHHHHh-CC---HHHHHHHHHHHHhcCCHHHHHHHHHH
Q ss_pred HHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCH-------hHHHHHHHHHHccCCH------HHHHH
Q 006615 198 VIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS-------KQYLILVEGFVGVERF------DEAKS 263 (638)
Q Consensus 198 m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~------~~A~~ 263 (638)
+....+.+ .....-..+-.....-..+-...+++.+......+.. .+|.+|+.-+|..... ++...
T Consensus 366 i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~ 445 (574)
T smart00638 366 IKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLK 445 (574)
T ss_pred HHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHH
Q ss_pred HHHHHHhCCCCCCHHHH--HHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCcccccccccc
Q 006615 264 LLNEMRDDGKFPGRAMR--VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLK 341 (638)
Q Consensus 264 l~~~m~~~g~~p~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (638)
.+.+.......-....- ..|.++...|.......+..-+..+...+.....
T Consensus 446 ~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~~~~~~~~~iR~--------------------------- 498 (574)
T smart00638 446 YLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLEGAEPLSTFIRL--------------------------- 498 (574)
T ss_pred HHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcCCCCCCCHHHHH---------------------------
Q ss_pred CCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCC
Q 006615 342 PWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGH 421 (638)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 421 (638)
.|+..|+.+.... .......++..|...+.
T Consensus 499 ----------------------------------------------~Av~Alr~~a~~~----p~~v~~~l~~i~~n~~e 528 (574)
T smart00638 499 ----------------------------------------------AAILALRNLAKRD----PRKVQEVLLPIYLNRAE 528 (574)
T ss_pred ----------------------------------------------HHHHHHHHHHHhC----chHHHHHHHHHHcCCCC
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhch
Q 006615 422 VELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDR 468 (638)
Q Consensus 422 ~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 468 (638)
..+ .++..-+.-....|+......+........+..-+--++..++
T Consensus 529 ~~E-vRiaA~~~lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~ 574 (574)
T smart00638 529 PPE-VRMAAVLVLMETKPSVALLQRIAELLNKEPNLQVASFVYSHIR 574 (574)
T ss_pred ChH-HHHHHHHHHHhcCCCHHHHHHHHHHHhhcCcHHHHHHhHHhhC
No 454
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=23.56 E-value=8.3e+02 Score=25.26 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=69.7
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CHHhHHHHHHHHHhcCC
Q 006615 111 VLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLL---STESYNIVMSVYAKTGK 187 (638)
Q Consensus 111 ~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p---~~~~~~~li~~~~~~g~ 187 (638)
+.+..|.++-.+.++++- ..+..+..|-..=+++-|-.|+++-...+. +.|..| |..-.+.|+-++.+ |.
T Consensus 90 aAsaAGHl~vVk~L~~~g--a~VN~tT~TNStPLraACfDG~leivKyLv----E~gad~~IanrhGhTcLmIa~yk-Gh 162 (615)
T KOG0508|consen 90 AASAAGHLEVVKLLLRRG--ASVNDTTRTNSTPLRAACFDGHLEIVKYLV----EHGADPEIANRHGHTCLMIACYK-GH 162 (615)
T ss_pred HHhccCcHHHHHHHHHhc--CccccccccCCccHHHHHhcchhHHHHHHH----HcCCCCcccccCCCeeEEeeecc-Cc
Confidence 345667777666555544 223333444446677788889988766665 444433 33334555555444 55
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHH
Q 006615 188 NFEAVETFRQVIDEGAIPNSRTY--TVMIEHLVNLGKLDSALEVFS 231 (638)
Q Consensus 188 ~~~A~~~~~~m~~~g~~p~~~ty--~~li~~~~~~g~~~~A~~~~~ 231 (638)
.+-| +.+.+.|..+|..++ |+-+.-|+..|.+|-..-++.
T Consensus 163 ~~I~----qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~ 204 (615)
T KOG0508|consen 163 VDIA----QYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLK 204 (615)
T ss_pred hHHH----HHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHh
Confidence 5544 445566778887777 688999999999988777665
No 455
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=23.53 E-value=3.6e+02 Score=21.58 Aligned_cols=88 Identities=14% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHH
Q 006615 189 FEAVETFRQVIDE-GAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266 (638)
Q Consensus 189 ~~A~~~~~~m~~~-g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 266 (638)
++|.+.+.++... |+.| |...--++......-..++ -.+.-...|++-+-.||. |+++.....+-
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL~~~~~~~----~~~~~~d~g~e~~~~t~~---------Ge~~~~~~~ll 72 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILCRIAFCRSLEEPSIPS----DEDIKDDSGLELNWKTFT---------GEYDDIYEALL 72 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHccCCCCC----CCccCCCCCeEEeeeeec---------CchHHHHHHHH
Q ss_pred HHHhCCCCCCHHHH-HHHHHHHHcC
Q 006615 267 EMRDDGKFPGRAMR-VALERMQEMG 290 (638)
Q Consensus 267 ~m~~~g~~p~~~~~-~ll~~~~~~g 290 (638)
++.. |...+...+ ..+..+...|
T Consensus 73 ~q~~-g~~~d~~~l~~~~~~Hl~rG 96 (113)
T PF08870_consen 73 KQRY-GPELDDEELPKYFKLHLDRG 96 (113)
T ss_pred HHHh-CCCCCHHHHHHHHHHHHHHh
No 456
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=23.18 E-value=1.8e+02 Score=23.10 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=22.9
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCC
Q 006615 487 LRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530 (638)
Q Consensus 487 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 530 (638)
+..+...+..-.|.++++.+.+.+..++..|.--.|+.+...|-
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 33344444455566666666665555555554444455554443
No 457
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=23.14 E-value=3.9e+02 Score=21.24 Aligned_cols=79 Identities=15% Similarity=0.080 Sum_probs=33.4
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHH
Q 006615 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLL 265 (638)
Q Consensus 186 g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~ 265 (638)
...++|..+.+-+...+-. ....--+-+..+.+.|++++|...=... -.||...|-+| +-.+.|.-+++..-+
T Consensus 20 HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl~~~~~----~~pdL~p~~AL--~a~klGL~~~~e~~l 92 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALLLPQCH----CYPDLEPWAAL--CAWKLGLASALESRL 92 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHHHHTTS------GGGHHHHHH--HHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHHhcccC----CCccHHHHHHH--HHHhhccHHHHHHHH
Confidence 3455666666655554321 1111122233455666666662211111 14555555544 233455555555555
Q ss_pred HHHHhC
Q 006615 266 NEMRDD 271 (638)
Q Consensus 266 ~~m~~~ 271 (638)
.++..+
T Consensus 93 ~rla~~ 98 (116)
T PF09477_consen 93 TRLASS 98 (116)
T ss_dssp HHHCT-
T ss_pred HHHHhC
Confidence 555443
No 458
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=23.02 E-value=1.3e+02 Score=21.79 Aligned_cols=38 Identities=24% Similarity=0.174 Sum_probs=24.1
Q ss_pred ccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccC
Q 006615 492 KCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQG 529 (638)
Q Consensus 492 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 529 (638)
..|+.+.+.+++++..+.|..|.......+..+....|
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777766666665655554443
No 459
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=22.85 E-value=8e+02 Score=24.77 Aligned_cols=52 Identities=12% Similarity=-0.024 Sum_probs=31.0
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCcchhhHH----HHHHHHH--ccCCHHHHHHHHHH
Q 006615 489 TLTKCKRDFDAINVLEEMIFSGIVPDVQTFS----GLMYHFA--LQGDEKIVQKLFSM 540 (638)
Q Consensus 489 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~----~li~~~~--~~g~~~~a~~l~~~ 540 (638)
.+.+.+++..|.++|+++.....+|+...+- .+..+|. ..-++++|.+.++.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4556677777888887777765555544332 2333332 34566777777764
No 460
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=22.78 E-value=1.1e+03 Score=26.56 Aligned_cols=141 Identities=15% Similarity=0.023 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH---HHHHH--HHHcccCC--HHHHHHHHHhchhccC---C
Q 006615 404 HDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFST---IRLII--DFYGISKK--ADAALKAFHDDRTLCG---P 473 (638)
Q Consensus 404 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~---~~~li--~~~~~~g~--~~~A~~~~~~~~~~~~---~ 473 (638)
+....+..+..+..-.|++++|..+.....+.--.-+... +..+. ..+-..|. +.+....|........ +
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~ 574 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKP 574 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3455566677777778888888877776554422223322 22222 22334452 3333344443332211 1
Q ss_pred CcchhHHHHHHHHHHHHHccCChHHHHHHHHHH----HhCCCCcchhhH--HHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 006615 474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEM----IFSGIVPDVQTF--SGLMYHFALQGDEKIVQKLFSMVRQNGVE 547 (638)
Q Consensus 474 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p~~~t~--~~li~~~~~~g~~~~a~~l~~~m~~~~~~ 547 (638)
...+- +.++..+..++.+ .+.+..-...- ......|-...+ ..|+......|++++|...++++......
T Consensus 575 ~~~f~-~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 575 RHEFL-VRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred cchhH-HHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 11111 2345555555555 33333222222 222222222222 36778888999999999999999876444
Q ss_pred C
Q 006615 548 P 548 (638)
Q Consensus 548 p 548 (638)
+
T Consensus 651 ~ 651 (894)
T COG2909 651 G 651 (894)
T ss_pred C
Confidence 3
No 461
>PRK09462 fur ferric uptake regulator; Provisional
Probab=22.78 E-value=4.1e+02 Score=22.39 Aligned_cols=60 Identities=13% Similarity=0.208 Sum_probs=32.2
Q ss_pred HHhcCCCCCHHhHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 006615 163 YRQRAKLLSTESYNIVMSVYAKT-GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223 (638)
Q Consensus 163 m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 223 (638)
+.+.|+++ +..-..++..+... +..-.|.++++.+.+.+...+..|.--.|+.+...|-+
T Consensus 8 l~~~glr~-T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKV-TLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCC-CHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 44455544 23344455555543 34566777777777666555555544444555555543
No 462
>PRK09857 putative transposase; Provisional
Probab=22.47 E-value=5.1e+02 Score=25.04 Aligned_cols=66 Identities=12% Similarity=0.132 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccC
Q 006615 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT 241 (638)
Q Consensus 175 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 241 (638)
+..++.-..+.++.++..++++.+.+. +.+.....-++..-+.+.|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 556666666777777777777777665 333444444566667777777778888888888887655
No 463
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=22.40 E-value=3.5e+02 Score=20.43 Aligned_cols=43 Identities=16% Similarity=0.290 Sum_probs=33.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchh
Q 006615 427 RLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRT 469 (638)
Q Consensus 427 ~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 469 (638)
++|+-....|+..|+..|..+++...-+=..+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 7888888889999999998888877666666666666666543
No 464
>PF06368 Met_asp_mut_E: Methylaspartate mutase E chain (MutE); InterPro: IPR006396 Glutamate mutase (methylaspartate mutase) catalyses the reversible interconversion of L-glutamate and L-threo-3-methylaspartate, the first step in the pathway of glutamate fermentation []. Catalysis is initiated using the cobalamin cofactor. The E subunit is the catalytic subunit (MutE) []. ; GO: 0016866 intramolecular transferase activity, 0031419 cobalamin binding, 0019670 anaerobic glutamate catabolic process; PDB: 1CB7_D 1I9C_B 1CCW_D.
Probab=22.33 E-value=21 Score=35.69 Aligned_cols=150 Identities=17% Similarity=0.138 Sum_probs=72.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCc--chhH---HHHHHHHHHHHH--
Q 006615 419 HGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS--KFKL---MLLYSSLLRTLT-- 491 (638)
Q Consensus 419 ~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~---~~~~~~li~~~~-- 491 (638)
.+.+++..++++.+.+.|-. | ....-|+.|.+.+++++|...+++-.+...... -|-+ +.....++.+.-
T Consensus 28 v~~~~~~i~lL~~l~~~g~~-d--~lp~TiDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhG~~~~R~v~~~v~~P 104 (441)
T PF06368_consen 28 VALPEEMIELLQYLRDEGGA-D--VLPLTIDSYTRQNDYEEAERGLEESIETGRSMLNGFPLVNHGVETCRKVLEAVDFP 104 (441)
T ss_dssp -SSHHHHHHHHHHHHHTT---S--SEEEEB-HHHHTT-HHHHHHHHHHHHHHTS--SSSB-HHHHHHHHHHHHHHH-SS-
T ss_pred CCCHHHHHHHHHHHHhccCC-C--eeceeeecccccccHHHHHHHHHhchhcCcccccCCccccccHHHHHHHHHhCCCC
Confidence 34567777777777776411 1 112336788899999999988877555221110 1110 234445555542
Q ss_pred ---ccCChHHHHHHHHHHHhCCCCcc---hhhHHHHHHHHHccCCHHHHH-------HHHHHHHhCCCCCCHhhHHHHHH
Q 006615 492 ---KCKRDFDAINVLEEMIFSGIVPD---VQTFSGLMYHFALQGDEKIVQ-------KLFSMVRQNGVEPDAYMFKVLIQ 558 (638)
Q Consensus 492 ---~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~a~-------~l~~~m~~~~~~p~~~~~~~li~ 558 (638)
++| ..++..+++.+...|+.-. .++||. -|++.=-+++++ +++-...+.|+.+|..+|.-|..
T Consensus 105 vQvRHG-tpdarlL~e~~~a~G~ta~EGG~ISYnl---PY~k~vpLe~si~~Wqy~drl~g~y~e~Gv~inrE~FGpLtg 180 (441)
T PF06368_consen 105 VQVRHG-TPDARLLAEIALASGFTAFEGGPISYNL---PYSKNVPLEKSIRDWQYVDRLCGYYEENGVEINREPFGPLTG 180 (441)
T ss_dssp EEEE----SS-HHHHHHHHHTT--EEE--TTTTTT---TT-SS--HHHHHHHHHHHHHHHHHHHHTT---EEE--TTTTS
T ss_pred eeccCC-CCcHHHHHHHHHHcCCCccCCCceeecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCCc
Confidence 122 3468889999988887532 345542 234433344444 44445567899888888876433
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHH
Q 006615 559 AYCKYLSNSNLMPDAATKELLKKSL 583 (638)
Q Consensus 559 ~~~~~m~~~g~~p~~~~~~~li~~~ 583 (638)
.++ .|+...--.++.++
T Consensus 181 tLv--------PPsisiav~ilE~L 197 (441)
T PF06368_consen 181 TLV--------PPSISIAVSILEAL 197 (441)
T ss_dssp SS----------HHHHHHHHHHHHH
T ss_pred Ccc--------CcHHHHHHHHHHHH
Confidence 332 55555555555543
No 465
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=22.31 E-value=2.2e+02 Score=22.61 Aligned_cols=13 Identities=38% Similarity=0.386 Sum_probs=4.7
Q ss_pred CCHHHHHHHHHhc
Q 006615 221 GKLDSALEVFSAL 233 (638)
Q Consensus 221 g~~~~A~~~~~~m 233 (638)
...++|+++.+-|
T Consensus 75 ~T~EEALEVInyl 87 (128)
T PF09868_consen 75 KTDEEALEVINYL 87 (128)
T ss_pred CcHHHHHHHHHHH
Confidence 3333333333333
No 466
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=22.25 E-value=8.2e+02 Score=24.69 Aligned_cols=54 Identities=9% Similarity=0.011 Sum_probs=33.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHH------hcCChHHHHHHHHH
Q 006615 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA------KTGKNFEAVETFRQ 197 (638)
Q Consensus 144 l~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~------~~g~~~~A~~~~~~ 197 (638)
+..+.+.+++..|.++|+++..+..+|+...+-..+..+| ..-++++|.+.++.
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3455677888888888888887765555444333333222 24567777777775
No 467
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=21.89 E-value=5.7e+02 Score=26.02 Aligned_cols=60 Identities=15% Similarity=0.254 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccC--C----C-ccCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 006615 209 TYTVMIEHLVNLGKLDSALEVFSALPLM--R----I-KRTSKQYLILVEGFVGVERFDEAKSLLNEM 268 (638)
Q Consensus 209 ty~~li~~~~~~g~~~~A~~~~~~m~~~--g----~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 268 (638)
+...|++.++-.||+..|.++++.+.-. + + ...+.+|--+.-+|.-.+++.+|.+.|...
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777888888888887765421 1 1 113344555566666677777777777665
No 468
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=21.83 E-value=2.2e+02 Score=22.62 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=25.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 006615 178 VMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223 (638)
Q Consensus 178 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 223 (638)
++..+...+..-.|.++++.+.+.+..++..|.--.|+.+.+.|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4444444455556666666666665555555555555555555543
No 469
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=21.78 E-value=1.3e+02 Score=30.73 Aligned_cols=130 Identities=18% Similarity=0.160 Sum_probs=68.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhcc------CCCcchhHHHHHHHHHHHH---
Q 006615 420 GHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLC------GPISKFKLMLLYSSLLRTL--- 490 (638)
Q Consensus 420 g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~li~~~--- 490 (638)
+.+++-.++++.+.+.|.. | ....-++.|.+.++++.|.+..++-.+.. -+..... +..+..|+.+.
T Consensus 25 ~~~~e~~~~l~~l~~~g~~-d--vl~ltiDsytr~~~~~~a~~~l~~~~~~~~~~lnG~P~v~~g-~~~~R~l~~~~~~P 100 (428)
T cd00245 25 PLLEEHIELLRTLQEEGAA-D--VLPLTIDSYTRVNDYEEAEEGLEESIKAGKSLLNGFPIVNHG-VKTCRKLLEGVDFP 100 (428)
T ss_pred CCHHHHHHHHHHHHhcCCC-C--eeccccccchhhhhhHHHHHHHHhhhhcCccccCCCCccccc-HHHHHHHHHhCCCC
Confidence 4456666777777766621 2 22244677778888888877777642111 1111111 12333344332
Q ss_pred --HccCChHHHHHHHHHHHhCCCCcc---hhhHHHHHHHHHccCCHHHHHHHHH---HH----HhCCCCCCHhhHHHHH
Q 006615 491 --TKCKRDFDAINVLEEMIFSGIVPD---VQTFSGLMYHFALQGDEKIVQKLFS---MV----RQNGVEPDAYMFKVLI 557 (638)
Q Consensus 491 --~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~a~~l~~---~m----~~~~~~p~~~~~~~li 557 (638)
.++| ..++..+++-+...|+.-. ..+||. -|.+.-.+++++.-|+ ++ .+.|+..+..++.-+.
T Consensus 101 lqvRhG-t~d~~~l~e~~~a~g~~a~egg~isy~~---py~k~~~Le~si~~wqy~~rl~~~y~e~gv~in~E~fg~l~ 175 (428)
T cd00245 101 VQVRHG-TPDARLLAEIAIASGFDATEGGPISYNL---PYSKNVPLEKSIENWQYCDRLVGFYEENGVPINREPFGPLT 175 (428)
T ss_pred EeeccC-CccHHHHHHHHHHhCcccccccceeecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceecccCCcCcc
Confidence 2333 3457777777777776432 345543 2344445666666662 22 2456666655555433
No 470
>PF12454 Ecm33: GPI-anchored cell wall organization protein
Probab=21.39 E-value=21 Score=22.16 Aligned_cols=9 Identities=67% Similarity=1.051 Sum_probs=6.2
Q ss_pred cccccchhh
Q 006615 2 FSKRFLPAV 10 (638)
Q Consensus 2 ~~~~~~p~l 10 (638)
|+|+.+|.|
T Consensus 3 ~~Ky~lpAl 11 (40)
T PF12454_consen 3 FSKYLLPAL 11 (40)
T ss_pred hHHHHHHHH
Confidence 667777766
No 471
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=21.21 E-value=8e+02 Score=24.18 Aligned_cols=117 Identities=15% Similarity=0.149 Sum_probs=51.7
Q ss_pred CChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHh------cCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCH
Q 006615 80 PNADSALSIMEALKSNPNFSHNQSTLHALATVLAK------SQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153 (638)
Q Consensus 80 ~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~------~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 153 (638)
+..++++.+++...... .|.++.....|.++-. .-+|.....+|+-+......|- ++.|.-+ +.++.-..
T Consensus 270 ~lI~eg~all~rA~~~~--~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPv-V~LNRAV-Ala~~~Gp 345 (415)
T COG4941 270 ALIDEGLALLDRALASR--RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPV-VTLNRAV-ALAMREGP 345 (415)
T ss_pred HHHHHHHHHHHHHHHcC--CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCe-EeehHHH-HHHHhhhH
Confidence 34455555555555443 2444555555554421 1245555555555554332221 2233222 22333344
Q ss_pred HHHHHHHHHHHhcCCCCCHHhHHHH-HHHHHhcCChHHHHHHHHHHHH
Q 006615 154 ELVLSTWNEYRQRAKLLSTESYNIV-MSVYAKTGKNFEAVETFRQVID 200 (638)
Q Consensus 154 ~~A~~l~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~ 200 (638)
+.++.+.+-+...+--.+-..|..+ -+.+.+.|+.++|..-|++...
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~ 393 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA 393 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 5555555555444211122222222 2334455666666666665554
No 472
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=20.95 E-value=4.7e+02 Score=21.37 Aligned_cols=43 Identities=12% Similarity=0.237 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhCCCCcc-hhhHHHHHHHHHccCCHHHHHHHHHH
Q 006615 498 DAINVLEEMIFSGIVPD-VQTFSGLMYHFALQGDEKIVQKLFSM 540 (638)
Q Consensus 498 ~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~ 540 (638)
++.++|+.|...|+--. +.-|..-...+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 89999999988876544 45577777888889999999999875
No 473
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=20.30 E-value=40 Score=22.77 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHH
Q 006615 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183 (638)
Q Consensus 151 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 183 (638)
|--++...+|.+|..++..|....||..+.-|.
T Consensus 6 gy~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~ 38 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSRNYDPKTRKWNFSLEDYS 38 (55)
T ss_pred cCCHHHHHHHHcCcccccCccceeeeeeHHHHH
Confidence 344566777777777777777777776665543
No 474
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=20.11 E-value=9e+02 Score=24.37 Aligned_cols=183 Identities=14% Similarity=0.102 Sum_probs=83.3
Q ss_pred CCChhHHHHHHHHHH----cCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH-hCCCCCchHhHHHHHHHHHh----
Q 006615 79 APNADSALSIMEALK----SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDIS-SSKFLNVSVNFMNLMQWYST---- 149 (638)
Q Consensus 79 ~~~~~~Al~~~~~~~----~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~-~~~~~~~~~~~~~ll~~~~~---- 149 (638)
.++.++|++-+-... .......+..++..+++.|...++|+..-..+..+. ++|.. ...-..+++-+..
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgql--k~ai~~Mvq~~~~y~~~ 102 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQL--KQAIQSMVQQAMTYIDG 102 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHhccC
Confidence 445555555443332 222344455567778888888888876655444332 22211 1111122221111
Q ss_pred cCCHHHHHHHHHHHHhc--C-C--CC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH----------
Q 006615 150 SGDLELVLSTWNEYRQR--A-K--LL-STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM---------- 213 (638)
Q Consensus 150 ~g~~~~A~~l~~~m~~~--~-~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~l---------- 213 (638)
..+.+--..+.+.++.- | + .. -...-..|...+-.+|++++|..++.+.. ..||.++
T Consensus 103 ~~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiL 175 (439)
T KOG1498|consen 103 TPDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFIL 175 (439)
T ss_pred CCCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHH
Confidence 11233333343333211 1 0 00 01122344556667788888888776653 3355444
Q ss_pred --HHHHHHcCCHHHHHHHHHhcccCCC-ccCH-----hHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615 214 --IEHLVNLGKLDSALEVFSALPLMRI-KRTS-----KQYLILVEGFVGVERFDEAKSLLNEMRD 270 (638)
Q Consensus 214 --i~~~~~~g~~~~A~~~~~~m~~~g~-~p~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~ 270 (638)
++.|.-.+|+-.|.-+-..+...=+ .||. .-|+.|+......+.+=.+.+.|+..-.
T Consensus 176 EQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~ 240 (439)
T KOG1498|consen 176 EQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYD 240 (439)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhc
Confidence 2345555555555443333322111 1222 1245555555555555555555555443
No 475
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=20.11 E-value=5.6e+02 Score=23.90 Aligned_cols=86 Identities=15% Similarity=0.023 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhH-HHHHHHHHHHHHccCChHHHH
Q 006615 422 VELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAI 500 (638)
Q Consensus 422 ~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~ 500 (638)
++.|.+.|..... .+.-......+-..|.+.|++++|.++|+.+..........+. ..+...+..++.+.|+.+...
T Consensus 161 L~~A~~~f~~~~~--~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l 238 (247)
T PF11817_consen 161 LEKAYEQFKKYGQ--NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYL 238 (247)
T ss_pred HHHHHHHHHHhcc--chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHH
Q ss_pred HHHHHHHhC
Q 006615 501 NVLEEMIFS 509 (638)
Q Consensus 501 ~l~~~m~~~ 509 (638)
.+--+|...
T Consensus 239 ~~~leLls~ 247 (247)
T PF11817_consen 239 TTSLELLSR 247 (247)
T ss_pred HHHHHHhcC
Done!