Query 006615
Match_columns 638
No_of_seqs 504 out of 3362
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 04:20:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006615.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006615hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 9.2E-36 3.2E-40 321.5 40.6 437 69-605 87-582 (597)
2 2xpi_A Anaphase-promoting comp 100.0 7E-33 2.4E-37 298.9 32.2 457 77-634 64-578 (597)
3 4g26_A Pentatricopeptide repea 100.0 9E-32 3.1E-36 278.1 26.0 182 120-301 8-200 (501)
4 4g26_A Pentatricopeptide repea 100.0 1.8E-31 6.2E-36 275.8 22.6 204 84-288 8-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 8.1E-24 2.8E-28 214.9 43.4 363 72-544 5-368 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 8.8E-24 3E-28 214.7 41.2 364 108-604 5-370 (388)
7 2gw1_A Mitochondrial precursor 99.9 2.6E-20 9E-25 196.5 35.2 438 71-606 11-482 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 3E-19 1E-23 185.0 36.6 325 101-522 25-370 (450)
9 2gw1_A Mitochondrial precursor 99.9 2.6E-19 8.9E-24 188.9 36.5 375 67-544 40-478 (514)
10 2y4t_A DNAJ homolog subfamily 99.9 5.6E-19 1.9E-23 183.0 37.9 313 134-552 23-364 (450)
11 3fp2_A TPR repeat-containing p 99.8 3.4E-18 1.1E-22 181.4 33.8 431 71-608 30-497 (537)
12 3spa_A Mtrpol, DNA-directed RN 99.8 4.2E-20 1.4E-24 195.5 9.2 136 135-275 125-264 (1134)
13 3ieg_A DNAJ homolog subfamily 99.8 9.9E-16 3.4E-20 153.0 39.5 137 405-544 187-335 (359)
14 3fp2_A TPR repeat-containing p 99.8 2.9E-17 9.8E-22 174.2 29.3 442 103-634 26-490 (537)
15 3spa_A Mtrpol, DNA-directed RN 99.8 6.5E-19 2.2E-23 186.5 14.2 150 102-256 127-286 (1134)
16 3ieg_A DNAJ homolog subfamily 99.8 3.4E-15 1.2E-19 149.0 38.3 107 411-525 239-350 (359)
17 3hym_B Cell division cycle pro 99.8 8.6E-16 2.9E-20 151.6 31.0 285 135-525 20-314 (330)
18 3hym_B Cell division cycle pro 99.7 4E-15 1.4E-19 146.8 32.4 298 103-497 23-322 (330)
19 2xm6_A Protein corresponding t 99.7 2.8E-13 9.6E-18 141.5 45.7 200 85-302 26-249 (490)
20 1fch_A Peroxisomal targeting s 99.7 2.3E-15 8E-20 151.1 26.2 99 405-504 250-354 (368)
21 1xi4_A Clathrin heavy chain; a 99.7 4E-13 1.4E-17 147.3 44.7 167 405-596 1194-1378(1630)
22 1b89_A Protein (clathrin heavy 99.7 3.7E-16 1.3E-20 153.7 19.2 288 76-501 13-303 (449)
23 1fch_A Peroxisomal targeting s 99.7 9.8E-16 3.4E-20 153.8 22.6 302 150-540 38-355 (368)
24 4eqf_A PEX5-related protein; a 99.7 4.2E-15 1.4E-19 149.1 25.0 266 137-540 65-352 (365)
25 1b89_A Protein (clathrin heavy 99.7 7.8E-17 2.7E-21 158.5 11.6 305 114-563 15-341 (449)
26 2xm6_A Protein corresponding t 99.7 2.7E-12 9.2E-17 134.0 45.5 345 72-545 45-433 (490)
27 4eqf_A PEX5-related protein; a 99.7 1.9E-15 6.6E-20 151.6 18.2 288 171-598 64-352 (365)
28 2ooe_A Cleavage stimulation fa 99.7 2.1E-12 7.2E-17 136.3 42.2 407 76-604 22-494 (530)
29 3mkr_A Coatomer subunit epsilo 99.7 2.9E-14 9.9E-19 137.4 25.3 148 112-271 9-159 (291)
30 3cv0_A Peroxisome targeting si 99.7 3E-14 1E-18 140.2 25.9 131 405-541 171-312 (327)
31 4g1t_A Interferon-induced prot 99.7 1.6E-13 5.6E-18 142.7 32.3 366 137-608 51-465 (472)
32 3mkr_A Coatomer subunit epsilo 99.6 4.9E-14 1.7E-18 135.8 25.7 250 180-544 7-264 (291)
33 2ooe_A Cleavage stimulation fa 99.6 2.5E-12 8.5E-17 135.8 40.6 416 100-633 11-490 (530)
34 3cv0_A Peroxisome targeting si 99.6 6.6E-14 2.3E-18 137.7 23.5 24 481-504 287-310 (327)
35 1xi4_A Clathrin heavy chain; a 99.6 3.3E-11 1.1E-15 132.4 42.6 405 72-604 1028-1460(1630)
36 4g1t_A Interferon-induced prot 99.5 2.1E-11 7.1E-16 126.7 32.1 144 384-545 314-460 (472)
37 3uq3_A Heat shock protein STI1 99.5 8E-12 2.7E-16 118.0 23.2 96 407-508 140-235 (258)
38 2pl2_A Hypothetical conserved 99.5 5.5E-12 1.9E-16 115.8 20.5 189 73-268 12-211 (217)
39 3uq3_A Heat shock protein STI1 99.5 9.4E-12 3.2E-16 117.5 22.5 65 405-470 172-236 (258)
40 2pl2_A Hypothetical conserved 99.4 2E-11 6.7E-16 112.1 21.6 197 100-302 3-211 (217)
41 3e4b_A ALGK; tetratricopeptide 99.4 5E-11 1.7E-15 122.5 25.3 377 72-604 9-423 (452)
42 2ho1_A Type 4 fimbrial biogene 99.4 6E-11 2E-15 111.7 23.9 194 72-270 43-237 (252)
43 2ho1_A Type 4 fimbrial biogene 99.4 1.1E-10 3.9E-15 109.8 24.5 201 102-305 37-238 (252)
44 3u4t_A TPR repeat-containing p 99.4 1.7E-10 5.9E-15 109.9 25.9 90 419-509 155-250 (272)
45 1xnf_A Lipoprotein NLPI; TPR, 99.4 2.6E-11 8.9E-16 115.8 20.1 250 149-538 17-269 (275)
46 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.4E-11 4.7E-16 117.8 17.5 222 76-303 15-242 (275)
47 2vq2_A PILW, putative fimbrial 99.4 1.5E-10 5E-15 106.7 23.9 196 104-302 10-208 (225)
48 3u4t_A TPR repeat-containing p 99.4 6.6E-11 2.3E-15 112.8 22.3 165 104-271 5-171 (272)
49 2vq2_A PILW, putative fimbrial 99.4 3.3E-10 1.1E-14 104.3 25.8 165 136-302 7-173 (225)
50 1ouv_A Conserved hypothetical 99.4 1.2E-09 4.2E-14 104.1 30.0 157 103-271 7-179 (273)
51 2q7f_A YRRB protein; TPR, prot 99.4 6.3E-11 2.2E-15 110.7 20.4 199 68-272 25-223 (243)
52 1ouv_A Conserved hypothetical 99.3 1.2E-09 4.2E-14 104.1 29.5 215 71-303 11-249 (273)
53 2h6f_A Protein farnesyltransfe 99.3 1.9E-10 6.5E-15 114.5 23.8 248 138-491 98-364 (382)
54 2h6f_A Protein farnesyltransfe 99.3 2.1E-10 7E-15 114.2 24.0 128 172-302 97-226 (382)
55 2q7f_A YRRB protein; TPR, prot 99.3 8.7E-11 3E-15 109.8 19.2 200 101-304 22-221 (243)
56 3sf4_A G-protein-signaling mod 99.3 1.3E-10 4.5E-15 117.8 19.6 198 104-302 11-253 (406)
57 4a1s_A PINS, partner of inscut 99.3 2.8E-10 9.6E-15 115.7 21.6 161 141-302 52-249 (411)
58 3ulq_A Response regulator aspa 99.3 8E-10 2.7E-14 111.2 24.6 238 213-543 109-367 (383)
59 3sf4_A G-protein-signaling mod 99.3 1.6E-10 5.3E-15 117.3 19.3 138 406-543 187-335 (406)
60 4a1s_A PINS, partner of inscut 99.3 1.4E-10 4.9E-15 117.9 18.8 282 172-544 48-372 (411)
61 3ro2_A PINS homolog, G-protein 99.2 1.9E-10 6.6E-15 113.0 17.7 139 406-544 183-332 (338)
62 3ro2_A PINS homolog, G-protein 99.2 1E-09 3.5E-14 107.8 22.3 279 140-509 8-332 (338)
63 2ond_A Cleavage stimulation fa 99.2 1.2E-08 4.1E-13 99.1 27.9 85 454-543 182-269 (308)
64 4abn_A Tetratricopeptide repea 99.2 7.9E-10 2.7E-14 114.3 20.0 216 81-302 83-318 (474)
65 3nf1_A KLC 1, kinesin light ch 99.2 2E-10 6.8E-15 111.7 14.5 134 137-270 27-181 (311)
66 3e4b_A ALGK; tetratricopeptide 99.2 6.1E-09 2.1E-13 106.9 26.3 343 74-542 43-419 (452)
67 3vtx_A MAMA; tetratricopeptide 99.2 5.1E-09 1.7E-13 93.0 22.0 165 102-270 5-169 (184)
68 4e6h_A MRNA 3'-END-processing 99.2 6.5E-07 2.2E-11 95.2 41.6 458 82-605 48-573 (679)
69 3vtx_A MAMA; tetratricopeptide 99.2 3.7E-09 1.3E-13 93.9 20.9 167 135-304 3-169 (184)
70 2ond_A Cleavage stimulation fa 99.2 9E-09 3.1E-13 100.0 24.7 215 83-303 33-268 (308)
71 3ulq_A Response regulator aspa 99.2 4.7E-09 1.6E-13 105.6 23.4 234 178-508 109-367 (383)
72 3q15_A PSP28, response regulat 99.1 1.3E-08 4.6E-13 102.0 26.1 316 133-543 6-364 (378)
73 4abn_A Tetratricopeptide repea 99.1 3.6E-09 1.2E-13 109.3 20.0 218 152-467 83-318 (474)
74 1hz4_A MALT regulatory protein 99.1 5E-08 1.7E-12 97.6 27.5 136 407-543 175-321 (373)
75 3nf1_A KLC 1, kinesin light ch 99.1 3.8E-09 1.3E-13 102.5 18.8 231 71-303 32-305 (311)
76 3as5_A MAMA; tetratricopeptide 99.1 1.3E-08 4.3E-13 90.2 20.0 163 104-270 10-172 (186)
77 4e6h_A MRNA 3'-END-processing 99.1 1.9E-06 6.3E-11 91.8 39.4 419 72-560 72-584 (679)
78 1hz4_A MALT regulatory protein 99.1 1E-07 3.5E-12 95.3 28.2 178 407-603 136-323 (373)
79 3as5_A MAMA; tetratricopeptide 99.1 1E-08 3.5E-13 90.8 18.5 164 137-303 8-171 (186)
80 3q15_A PSP28, response regulat 99.0 4.5E-08 1.5E-12 98.2 24.4 320 169-603 7-366 (378)
81 4gyw_A UDP-N-acetylglucosamine 99.0 1.7E-08 6E-13 108.6 19.7 161 103-269 10-172 (723)
82 3edt_B KLC 2, kinesin light ch 99.0 3.1E-08 1.1E-12 94.4 18.7 219 384-602 15-281 (283)
83 3edt_B KLC 2, kinesin light ch 98.9 1.3E-08 4.3E-13 97.2 15.4 225 77-303 12-279 (283)
84 4gyw_A UDP-N-acetylglucosamine 98.9 3.5E-08 1.2E-12 106.3 19.9 160 69-234 12-172 (723)
85 4i17_A Hypothetical protein; T 98.9 7.7E-08 2.6E-12 88.7 19.4 190 404-605 5-212 (228)
86 1qqe_A Vesicular transport pro 98.9 2.8E-07 9.5E-12 88.5 22.7 102 407-508 159-268 (292)
87 2fo7_A Synthetic consensus TPR 98.9 8.1E-08 2.8E-12 79.7 16.6 128 140-270 4-131 (136)
88 4i17_A Hypothetical protein; T 98.9 2.3E-07 7.8E-12 85.5 20.4 189 71-272 12-210 (228)
89 1qqe_A Vesicular transport pro 98.8 2.8E-07 9.5E-12 88.6 18.1 207 81-303 32-267 (292)
90 2fo7_A Synthetic consensus TPR 98.8 2.7E-07 9.2E-12 76.4 15.4 129 173-303 2-130 (136)
91 3mv2_B Coatomer subunit epsilo 98.7 1.4E-06 4.7E-11 82.2 19.6 144 121-269 85-238 (310)
92 3mv2_B Coatomer subunit epsilo 98.7 1.4E-06 4.6E-11 82.3 19.1 185 85-279 85-288 (310)
93 2pzi_A Probable serine/threoni 98.7 6.2E-07 2.1E-11 97.0 18.5 152 113-270 402-562 (681)
94 3qky_A Outer membrane assembly 98.6 2.1E-06 7E-11 80.9 19.6 178 405-607 14-229 (261)
95 3qou_A Protein YBBN; thioredox 98.6 9.6E-07 3.3E-11 84.4 16.1 164 135-302 115-281 (287)
96 2ifu_A Gamma-SNAP; membrane fu 98.6 1.4E-06 4.7E-11 84.3 17.4 95 150-269 4-103 (307)
97 3qky_A Outer membrane assembly 98.6 1.9E-06 6.5E-11 81.1 16.7 180 72-272 21-225 (261)
98 2pzi_A Probable serine/threoni 98.6 7.5E-07 2.6E-11 96.4 15.5 173 77-257 402-583 (681)
99 2yhc_A BAMD, UPF0169 lipoprote 98.6 6.1E-06 2.1E-10 75.6 19.6 173 407-604 5-215 (225)
100 2r5s_A Uncharacterized protein 98.5 8.8E-07 3E-11 77.7 13.0 155 142-301 11-169 (176)
101 3urz_A Uncharacterized protein 98.5 4.1E-06 1.4E-10 75.7 17.8 130 141-277 58-190 (208)
102 3urz_A Uncharacterized protein 98.5 3.3E-06 1.1E-10 76.3 16.7 170 73-250 11-198 (208)
103 2yhc_A BAMD, UPF0169 lipoprote 98.5 8.3E-06 2.8E-10 74.7 19.0 56 248-303 153-211 (225)
104 3rjv_A Putative SEL1 repeat pr 98.5 7.9E-06 2.7E-10 74.0 18.6 178 83-273 3-199 (212)
105 2r5s_A Uncharacterized protein 98.5 1.7E-06 5.9E-11 75.8 13.7 156 72-232 12-169 (176)
106 2vsy_A XCC0866; transferase, g 98.5 2.9E-06 9.9E-11 90.0 17.7 153 79-236 2-157 (568)
107 3qou_A Protein YBBN; thioredox 98.5 2.8E-06 9.5E-11 81.2 15.7 165 101-269 116-282 (287)
108 2ifu_A Gamma-SNAP; membrane fu 98.5 8E-06 2.7E-10 78.9 19.1 125 407-536 117-253 (307)
109 2vsy_A XCC0866; transferase, g 98.5 3.7E-06 1.3E-10 89.2 18.0 156 115-274 2-160 (568)
110 2uy1_A Cleavage stimulation fa 98.4 0.00015 5.3E-09 74.6 28.1 125 407-543 287-412 (493)
111 4ga2_A E3 SUMO-protein ligase 98.4 1.2E-06 4.1E-11 74.4 10.0 142 377-529 4-148 (150)
112 3rjv_A Putative SEL1 repeat pr 98.4 2.8E-05 9.6E-10 70.3 19.7 177 388-604 4-199 (212)
113 4ga2_A E3 SUMO-protein ligase 98.4 1.5E-06 5.2E-11 73.8 10.6 111 78-192 9-119 (150)
114 2qfc_A PLCR protein; TPR, HTH, 98.4 5.2E-05 1.8E-09 72.5 22.5 176 407-601 76-265 (293)
115 3u3w_A Transcriptional activat 98.4 9.3E-05 3.2E-09 70.8 24.2 221 356-602 29-266 (293)
116 3dra_A Protein farnesyltransfe 98.4 0.00038 1.3E-08 66.2 27.4 149 140-291 70-235 (306)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.4 2.1E-05 7.3E-10 71.1 18.0 129 140-273 9-152 (213)
118 3dra_A Protein farnesyltransfe 98.4 0.00011 3.6E-09 70.1 23.0 225 73-303 39-285 (306)
119 3gw4_A Uncharacterized protein 98.3 6.9E-06 2.4E-10 73.6 12.9 167 417-603 3-177 (203)
120 1a17_A Serine/threonine protei 98.3 2.2E-05 7.5E-10 67.6 15.6 127 139-268 15-143 (166)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.3 5.7E-05 2E-09 68.2 19.1 127 105-236 9-150 (213)
122 1na0_A Designed protein CTPR3; 98.3 2.1E-05 7.3E-10 63.6 14.7 94 139-234 11-104 (125)
123 3u3w_A Transcriptional activat 98.3 1.6E-05 5.6E-10 76.1 16.1 169 102-270 75-265 (293)
124 4gco_A Protein STI-1; structur 98.3 1.2E-05 4.3E-10 65.7 13.0 104 476-604 9-112 (126)
125 1na0_A Designed protein CTPR3; 98.2 2.6E-05 9E-10 63.1 14.1 100 172-273 9-108 (125)
126 3gw4_A Uncharacterized protein 98.2 1.4E-05 4.7E-10 71.6 13.0 155 114-269 4-174 (203)
127 3gyz_A Chaperone protein IPGC; 98.2 1.3E-05 4.5E-10 67.8 11.9 104 476-604 32-135 (151)
128 2qfc_A PLCR protein; TPR, HTH, 98.2 8.6E-05 2.9E-09 71.0 18.8 160 108-267 81-262 (293)
129 2vyi_A SGTA protein; chaperone 98.2 3.7E-05 1.3E-09 62.8 14.0 116 139-257 14-129 (131)
130 2lni_A Stress-induced-phosphop 98.2 3.9E-05 1.4E-09 63.0 14.1 95 138-234 17-111 (133)
131 4f3v_A ESX-1 secretion system 98.2 3.3E-05 1.1E-09 71.9 14.4 189 78-273 18-239 (282)
132 4gco_A Protein STI-1; structur 98.2 5.1E-05 1.8E-09 61.9 14.2 94 140-235 16-109 (126)
133 3gyz_A Chaperone protein IPGC; 98.2 1.6E-05 5.6E-10 67.2 11.3 95 139-235 38-132 (151)
134 1a17_A Serine/threonine protei 98.2 8.1E-05 2.8E-09 63.9 16.2 127 104-233 15-143 (166)
135 2vgx_A Chaperone SYCD; alterna 98.2 1.4E-05 4.8E-10 67.6 10.8 106 476-606 17-122 (148)
136 2lni_A Stress-induced-phosphop 98.1 3.4E-05 1.2E-09 63.4 12.6 120 169-290 13-132 (133)
137 2uy1_A Cleavage stimulation fa 98.1 0.0051 1.7E-07 63.2 31.2 356 80-508 28-412 (493)
138 2vyi_A SGTA protein; chaperone 98.1 5E-05 1.7E-09 62.0 13.2 120 171-292 11-130 (131)
139 2e2e_A Formate-dependent nitri 98.1 2.1E-05 7.2E-10 68.8 11.4 122 76-201 20-144 (177)
140 2c2l_A CHIP, carboxy terminus 98.1 1.9E-05 6.4E-10 75.1 11.8 193 101-305 3-199 (281)
141 2e2e_A Formate-dependent nitri 98.1 3.3E-05 1.1E-09 67.5 12.3 120 418-544 22-144 (177)
142 3q7a_A Farnesyltransferase alp 98.1 0.0035 1.2E-07 60.3 26.7 156 120-279 72-245 (349)
143 1p5q_A FKBP52, FK506-binding p 98.0 8.9E-05 3E-09 72.4 15.5 130 137-268 147-291 (336)
144 2vgx_A Chaperone SYCD; alterna 98.0 1.9E-05 6.6E-10 66.7 9.3 94 174-269 23-116 (148)
145 3q7a_A Farnesyltransferase alp 98.0 0.0015 5E-08 62.9 23.0 140 148-290 65-215 (349)
146 1p5q_A FKBP52, FK506-binding p 98.0 6.5E-05 2.2E-09 73.4 14.0 132 405-543 146-293 (336)
147 1elw_A TPR1-domain of HOP; HOP 98.0 0.00028 9.7E-09 56.1 15.4 93 140-234 7-99 (118)
148 4f3v_A ESX-1 secretion system 98.0 0.0003 1E-08 65.3 16.9 185 114-304 18-236 (282)
149 2xcb_A PCRH, regulatory protei 98.0 8E-05 2.7E-09 62.3 12.0 104 476-604 14-117 (142)
150 2c2l_A CHIP, carboxy terminus 98.0 0.00019 6.6E-09 68.0 16.0 186 405-603 3-200 (281)
151 4b4t_Q 26S proteasome regulato 98.0 0.0037 1.3E-07 63.2 26.6 194 406-604 175-385 (434)
152 2kck_A TPR repeat; tetratricop 97.9 0.00011 3.8E-09 57.9 11.8 95 174-270 8-105 (112)
153 3upv_A Heat shock protein STI1 97.9 0.00028 9.7E-09 57.3 14.1 93 140-234 7-99 (126)
154 4gcn_A Protein STI-1; structur 97.9 0.0001 3.6E-09 60.2 11.3 93 444-543 11-111 (127)
155 1elw_A TPR1-domain of HOP; HOP 97.9 0.0003 1E-08 55.9 13.7 100 172-273 4-103 (118)
156 4b4t_Q 26S proteasome regulato 97.9 0.00037 1.3E-08 70.7 17.6 198 72-269 10-243 (434)
157 2kck_A TPR repeat; tetratricop 97.9 0.00014 4.8E-09 57.3 11.3 95 139-235 8-105 (112)
158 3upv_A Heat shock protein STI1 97.9 0.00019 6.7E-09 58.3 12.4 95 408-508 6-100 (126)
159 2xcb_A PCRH, regulatory protei 97.9 0.00018 6.3E-09 60.0 12.4 94 140-235 21-114 (142)
160 1elr_A TPR2A-domain of HOP; HO 97.8 8.6E-05 2.9E-09 60.6 9.9 94 140-234 7-106 (131)
161 4gcn_A Protein STI-1; structur 97.8 0.00027 9.4E-09 57.6 12.6 110 406-518 8-119 (127)
162 3sz7_A HSC70 cochaperone (SGT) 97.8 0.00034 1.2E-08 60.0 13.7 97 137-235 11-107 (164)
163 3q49_B STIP1 homology and U bo 97.8 0.0004 1.4E-08 57.2 13.6 93 139-233 11-103 (137)
164 2dba_A Smooth muscle cell asso 97.8 0.00068 2.3E-08 56.6 15.1 92 140-234 31-126 (148)
165 3ro3_A PINS homolog, G-protein 97.8 0.00014 5E-09 61.8 11.0 138 406-543 9-157 (164)
166 1elr_A TPR2A-domain of HOP; HO 97.8 0.00024 8.1E-09 57.8 11.8 102 407-509 5-108 (131)
167 3q49_B STIP1 homology and U bo 97.8 0.00039 1.3E-08 57.3 13.1 100 170-271 7-106 (137)
168 3sz7_A HSC70 cochaperone (SGT) 97.7 0.00039 1.3E-08 59.7 12.9 101 171-273 10-110 (164)
169 2fbn_A 70 kDa peptidylprolyl i 97.7 0.00036 1.2E-08 62.0 13.1 88 173-262 89-176 (198)
170 2dba_A Smooth muscle cell asso 97.7 0.00049 1.7E-08 57.5 13.2 100 170-272 26-129 (148)
171 2fbn_A 70 kDa peptidylprolyl i 97.7 0.00068 2.3E-08 60.3 14.7 128 104-234 40-184 (198)
172 3ro3_A PINS homolog, G-protein 97.7 0.00023 7.9E-09 60.5 10.8 131 139-269 11-156 (164)
173 1hxi_A PEX5, peroxisome target 97.7 0.00041 1.4E-08 56.0 11.4 91 142-235 22-113 (121)
174 3dss_A Geranylgeranyl transfer 97.7 0.013 4.5E-07 56.0 23.4 222 74-304 37-303 (331)
175 1hxi_A PEX5, peroxisome target 97.6 0.0003 1E-08 56.8 9.9 94 409-508 20-113 (121)
176 3dss_A Geranylgeranyl transfer 97.6 0.032 1.1E-06 53.3 24.1 82 455-544 207-304 (331)
177 3k9i_A BH0479 protein; putativ 97.5 0.00025 8.5E-09 56.8 7.5 84 116-200 4-89 (117)
178 3n71_A Histone lysine methyltr 97.5 0.001 3.5E-08 67.9 13.6 134 450-603 318-465 (490)
179 1wao_1 Serine/threonine protei 97.5 0.00026 8.8E-09 72.7 9.3 118 146-266 15-134 (477)
180 2xev_A YBGF; tetratricopeptide 97.5 0.0016 5.6E-08 52.8 12.6 87 145-234 10-103 (129)
181 3k9i_A BH0479 protein; putativ 97.5 0.00023 8E-09 57.0 6.7 85 150-235 3-89 (117)
182 3rkv_A Putative peptidylprolyl 97.4 0.0026 9E-08 54.2 13.4 71 477-550 60-130 (162)
183 1kt0_A FKBP51, 51 kDa FK506-bi 97.4 0.0019 6.4E-08 66.0 14.4 121 139-262 270-405 (457)
184 1kt0_A FKBP51, 51 kDa FK506-bi 97.4 0.0021 7.3E-08 65.5 14.8 129 103-234 269-413 (457)
185 2xev_A YBGF; tetratricopeptide 97.4 0.0052 1.8E-07 49.7 14.5 92 108-201 8-105 (129)
186 3n71_A Histone lysine methyltr 97.4 0.0016 5.4E-08 66.5 13.5 130 414-543 317-463 (490)
187 1wao_1 Serine/threonine protei 97.4 0.00054 1.8E-08 70.3 9.7 124 175-301 9-135 (477)
188 1ihg_A Cyclophilin 40; ppiase 97.4 0.0032 1.1E-07 62.1 14.9 94 476-594 269-362 (370)
189 2if4_A ATFKBP42; FKBP-like, al 97.3 0.00065 2.2E-08 66.3 9.5 129 480-634 179-327 (338)
190 2hr2_A Hypothetical protein; a 97.3 0.0022 7.5E-08 53.6 11.2 64 480-543 57-130 (159)
191 2l6j_A TPR repeat-containing p 97.3 0.00041 1.4E-08 54.6 6.6 95 136-233 3-104 (111)
192 3rkv_A Putative peptidylprolyl 97.3 0.002 6.7E-08 55.0 11.1 104 406-516 11-131 (162)
193 1ihg_A Cyclophilin 40; ppiase 97.2 0.004 1.4E-07 61.4 13.9 89 172-262 273-361 (370)
194 1dce_A Protein (RAB geranylger 97.2 0.024 8.3E-07 59.2 20.5 172 116-291 43-241 (567)
195 2if4_A ATFKBP42; FKBP-like, al 97.2 0.0013 4.5E-08 64.1 10.2 126 140-270 182-327 (338)
196 2hr2_A Hypothetical protein; a 97.2 0.0036 1.2E-07 52.3 11.2 101 408-508 13-130 (159)
197 1klx_A Cysteine rich protein B 96.9 0.014 4.8E-07 48.0 12.7 110 152-272 10-127 (138)
198 1dce_A Protein (RAB geranylger 96.9 0.027 9.2E-07 58.9 17.4 180 75-260 37-244 (567)
199 1klx_A Cysteine rich protein B 96.9 0.019 6.6E-07 47.2 13.3 89 143-237 31-127 (138)
200 1na3_A Designed protein CTPR2; 96.9 0.015 5.1E-07 43.3 11.3 63 138-201 10-72 (91)
201 2l6j_A TPR repeat-containing p 96.9 0.00093 3.2E-08 52.5 4.5 63 172-235 4-66 (111)
202 2kat_A Uncharacterized protein 96.8 0.0081 2.8E-07 47.5 9.6 77 122-200 5-81 (115)
203 3ma5_A Tetratricopeptide repea 96.6 0.01 3.5E-07 45.5 9.0 64 136-200 6-69 (100)
204 2kat_A Uncharacterized protein 96.6 0.014 4.7E-07 46.1 9.9 79 155-235 3-81 (115)
205 1zu2_A Mitochondrial import re 96.5 0.0042 1.4E-07 51.8 6.1 99 417-523 13-132 (158)
206 1na3_A Designed protein CTPR2; 96.5 0.019 6.6E-07 42.6 9.6 80 172-253 9-88 (91)
207 3mkq_A Coatomer beta'-subunit; 96.5 0.13 4.3E-06 56.8 20.1 100 183-302 663-762 (814)
208 1zu2_A Mitochondrial import re 96.5 0.0073 2.5E-07 50.4 7.3 59 153-214 62-131 (158)
209 3qww_A SET and MYND domain-con 96.4 0.015 5E-07 58.3 10.6 91 453-543 310-410 (433)
210 3ma5_A Tetratricopeptide repea 96.3 0.014 4.7E-07 44.8 7.8 66 477-543 4-69 (100)
211 3qwp_A SET and MYND domain-con 96.1 0.033 1.1E-06 55.8 11.4 96 448-543 294-399 (429)
212 3qww_A SET and MYND domain-con 96.1 0.021 7E-07 57.2 9.7 91 418-508 310-410 (433)
213 3qwp_A SET and MYND domain-con 96.0 0.053 1.8E-06 54.3 12.3 98 411-508 292-399 (429)
214 3mkq_A Coatomer beta'-subunit; 95.9 0.055 1.9E-06 59.7 13.1 156 73-268 606-762 (814)
215 3ly7_A Transcriptional activat 95.8 0.11 3.9E-06 49.8 12.9 144 403-554 191-347 (372)
216 3ly7_A Transcriptional activat 95.6 0.26 8.7E-06 47.4 14.5 155 133-293 190-359 (372)
217 2kc7_A BFR218_protein; tetratr 95.6 0.069 2.4E-06 40.4 8.8 58 143-201 6-64 (99)
218 3mkq_B Coatomer subunit alpha; 95.4 0.4 1.4E-05 40.5 13.4 131 144-303 12-142 (177)
219 2kc7_A BFR218_protein; tetratr 95.0 0.048 1.6E-06 41.3 6.3 55 488-544 8-64 (99)
220 3bee_A Putative YFRE protein; 94.0 0.63 2.2E-05 34.7 10.2 65 136-201 5-72 (93)
221 1wy6_A Hypothetical protein ST 93.9 1.7 5.8E-05 34.5 12.4 85 453-547 73-157 (172)
222 3mkq_B Coatomer subunit alpha; 93.9 2.6 8.8E-05 35.6 18.4 101 113-234 16-116 (177)
223 1pc2_A Mitochondria fission pr 93.6 0.47 1.6E-05 39.0 9.4 19 216-234 80-98 (152)
224 3bee_A Putative YFRE protein; 93.6 0.64 2.2E-05 34.7 9.5 63 481-545 7-73 (93)
225 1pc2_A Mitochondria fission pr 93.4 0.79 2.7E-05 37.7 10.4 25 246-270 75-99 (152)
226 2v5f_A Prolyl 4-hydroxylase su 93.4 0.47 1.6E-05 36.3 8.8 61 140-200 8-74 (104)
227 3u64_A Protein TP_0956; tetrat 92.1 0.76 2.6E-05 42.3 9.5 104 172-279 154-279 (301)
228 4b4t_P 26S proteasome regulato 92.0 11 0.00037 37.7 21.0 194 408-604 179-388 (445)
229 1wy6_A Hypothetical protein ST 92.0 3.9 0.00013 32.5 13.5 68 206-274 90-157 (172)
230 2v5f_A Prolyl 4-hydroxylase su 91.7 1.9 6.6E-05 32.7 10.3 66 102-167 5-76 (104)
231 3u64_A Protein TP_0956; tetrat 91.6 2.1 7.1E-05 39.5 11.7 84 457-547 179-272 (301)
232 4h7y_A Dual specificity protei 88.9 3.6 0.00012 33.5 9.6 101 102-204 13-126 (161)
233 2ff4_A Probable regulatory pro 88.9 3.4 0.00012 40.5 11.9 127 403-551 109-246 (388)
234 1v54_E Cytochrome C oxidase po 88.8 2.3 8E-05 31.6 7.6 74 495-569 25-98 (109)
235 2ff4_A Probable regulatory pro 88.4 2.2 7.5E-05 41.9 10.1 69 175-244 174-247 (388)
236 3lvg_A Clathrin heavy chain 1; 88.4 0.00072 2.5E-08 66.2 -14.3 263 172-535 54-324 (624)
237 1v54_E Cytochrome C oxidase po 88.3 2.6 9E-05 31.4 7.7 63 117-180 25-87 (109)
238 4h7y_A Dual specificity protei 86.5 6.4 0.00022 32.0 9.6 56 493-549 73-128 (161)
239 4gns_B Protein CSD3, chitin bi 85.4 8.5 0.00029 41.1 13.0 123 142-268 253-397 (754)
240 1nzn_A CGI-135 protein, fissio 85.4 3.1 0.00011 32.8 7.3 19 216-234 83-101 (126)
241 3lvg_A Clathrin heavy chain 1; 84.3 0.011 3.8E-07 58.1 -8.5 214 66-301 83-316 (624)
242 1nzn_A CGI-135 protein, fissio 83.9 5.9 0.0002 31.2 8.3 80 119-200 18-102 (126)
243 4b4t_P 26S proteasome regulato 83.3 38 0.0013 33.6 21.2 190 80-269 30-245 (445)
244 4gns_B Protein CSD3, chitin bi 83.3 8.1 0.00028 41.2 11.7 129 104-234 250-398 (754)
245 1zbp_A Hypothetical protein VP 83.2 26 0.0009 31.7 14.0 119 488-607 5-134 (273)
246 2y69_E Cytochrome C oxidase su 83.0 5.8 0.0002 31.4 7.6 73 496-569 69-141 (152)
247 4fhn_B Nucleoporin NUP120; pro 82.3 19 0.00064 41.1 15.2 149 376-534 818-990 (1139)
248 2y69_E Cytochrome C oxidase su 81.4 8.6 0.0003 30.4 8.1 63 118-181 69-131 (152)
249 3ffl_A Anaphase-promoting comp 75.2 13 0.00045 30.8 8.0 33 280-312 126-158 (167)
250 4fhn_B Nucleoporin NUP120; pro 72.9 19 0.00065 41.0 11.6 149 72-228 818-992 (1139)
251 3o48_A Mitochondria fission 1 71.7 34 0.0011 27.1 9.2 46 155-200 61-106 (134)
252 4b4t_R RPN7, 26S proteasome re 70.6 22 0.00074 35.3 10.2 98 409-508 134-236 (429)
253 1zbp_A Hypothetical protein VP 68.5 13 0.00043 33.7 7.0 117 145-270 5-128 (273)
254 1k1a_A B-cell lymphoma 3-encod 68.5 28 0.00097 30.6 9.9 178 110-300 14-204 (241)
255 3ffl_A Anaphase-promoting comp 68.1 15 0.0005 30.5 6.8 60 411-470 25-92 (167)
256 4b4t_R RPN7, 26S proteasome re 67.2 24 0.00081 35.0 9.7 61 139-199 133-195 (429)
257 3esl_A Checkpoint serine/threo 67.0 61 0.0021 27.8 11.1 73 476-549 76-149 (202)
258 2p58_C Putative type III secre 67.0 36 0.0012 25.3 7.7 13 148-160 51-63 (116)
259 3esl_A Checkpoint serine/threo 63.5 55 0.0019 28.1 9.6 54 117-170 94-148 (202)
260 2uwj_G Type III export protein 63.1 35 0.0012 25.3 7.0 14 147-160 49-62 (115)
261 1y8m_A FIS1; mitochondria, unk 61.8 61 0.0021 26.0 11.3 23 178-200 83-105 (144)
262 1k1a_A B-cell lymphoma 3-encod 60.9 27 0.00093 30.7 8.2 150 143-301 12-172 (241)
263 1wdy_A 2-5A-dependent ribonucl 60.7 35 0.0012 30.9 9.1 24 417-440 190-213 (285)
264 3txn_A 26S proteasome regulato 60.5 1.3E+02 0.0043 29.2 20.8 168 375-542 24-208 (394)
265 1wdy_A 2-5A-dependent ribonucl 57.9 55 0.0019 29.5 10.0 214 72-301 8-241 (285)
266 3lpz_A GET4 (YOR164C homolog); 55.8 1.4E+02 0.0047 28.2 21.8 167 104-303 37-214 (336)
267 2nsz_A Programmed cell death p 54.8 49 0.0017 26.1 7.6 64 140-204 10-75 (129)
268 2rfa_A Transient receptor pote 52.9 71 0.0024 27.8 9.5 87 212-302 123-220 (232)
269 2wpv_A GET4, UPF0363 protein Y 52.6 1.5E+02 0.0051 27.6 21.3 67 400-466 86-159 (312)
270 2uwj_G Type III export protein 52.4 69 0.0024 23.8 8.9 77 186-272 20-98 (115)
271 3txn_A 26S proteasome regulato 52.4 1.7E+02 0.0058 28.3 27.5 191 408-605 141-346 (394)
272 2wvi_A Mitotic checkpoint seri 52.3 96 0.0033 25.6 9.0 70 476-551 62-132 (164)
273 2p58_C Putative type III secre 51.8 72 0.0025 23.8 9.6 77 186-272 21-99 (116)
274 4a1g_A Mitotic checkpoint seri 50.8 85 0.0029 25.5 8.4 69 476-550 67-136 (152)
275 2d2s_A Exocyst complex compone 50.6 79 0.0027 28.0 9.0 87 179-268 25-117 (235)
276 3hra_A Ankyrin repeat family p 50.2 55 0.0019 27.6 8.1 84 214-298 110-197 (201)
277 1qsa_A Protein (soluble lytic 49.5 2.4E+02 0.0083 29.2 24.7 115 187-304 229-347 (618)
278 1y8m_A FIS1; mitochondria, unk 48.5 1E+02 0.0036 24.7 11.1 47 497-543 59-105 (144)
279 2etb_A Transient receptor pote 46.8 42 0.0014 30.0 7.0 187 109-302 6-244 (256)
280 2ion_A PDCD4, programmed cell 46.2 45 0.0015 27.2 6.2 64 140-204 12-77 (152)
281 3jxi_A Vanilloid receptor-rela 45.9 20 0.00069 32.2 4.7 186 111-302 11-248 (260)
282 3o48_A Mitochondria fission 1 43.7 1.2E+02 0.0041 24.0 9.8 66 170-235 38-106 (134)
283 3eu9_A Huntingtin-interacting 42.5 1.3E+02 0.0045 25.9 9.6 207 75-302 15-233 (240)
284 2wpv_A GET4, UPF0363 protein Y 41.6 2.2E+02 0.0075 26.5 21.6 167 104-303 35-215 (312)
285 2d2s_A Exocyst complex compone 40.2 1.4E+02 0.0048 26.4 9.0 28 205-232 89-116 (235)
286 3eu9_A Huntingtin-interacting 39.3 84 0.0029 27.3 7.7 177 111-301 15-199 (240)
287 3kea_A K1L; tropism, ANK repea 38.6 66 0.0023 29.4 7.1 53 212-267 131-183 (285)
288 2xig_A Ferric uptake regulatio 38.4 1.2E+02 0.0043 24.4 7.8 62 161-223 16-77 (150)
289 1bd8_A P19INK4D CDK4/6 inhibit 35.7 49 0.0017 26.5 5.1 16 112-127 9-24 (156)
290 4aez_C MAD3, mitotic spindle c 34.9 1.2E+02 0.0041 26.5 7.3 68 476-549 116-184 (223)
291 4ets_A Ferric uptake regulatio 34.7 60 0.0021 26.8 5.4 68 83-151 14-83 (162)
292 4a1g_A Mitotic checkpoint seri 33.9 1.9E+02 0.0065 23.5 10.0 50 156-205 84-134 (152)
293 4g8k_A 2-5A-dependent ribonucl 33.5 2.9E+02 0.0099 25.5 16.2 49 491-550 281-329 (337)
294 2fe3_A Peroxide operon regulat 33.3 1.5E+02 0.0051 23.7 7.5 58 163-221 13-70 (145)
295 3t8k_A Uncharacterized protein 33.2 1.6E+02 0.0055 24.6 8.1 64 143-206 41-108 (186)
296 3ygs_P Procaspase 9; apoptosis 33.0 58 0.002 24.1 4.5 38 151-192 51-88 (97)
297 3aji_A 26S proteasome non-ATPa 32.7 1.7E+02 0.0058 25.1 8.6 20 281-300 174-193 (231)
298 2p1h_A APAF-1, apoptotic prote 32.3 1.3E+02 0.0044 21.8 6.4 59 123-189 26-84 (94)
299 4b4t_S RPN3, 26S proteasome re 32.0 2.4E+02 0.0081 28.4 9.9 114 480-598 231-366 (523)
300 2dzn_A Probable 26S proteasome 31.9 47 0.0016 28.8 4.7 79 214-301 111-196 (228)
301 1mzb_A Ferric uptake regulatio 31.5 1.2E+02 0.004 24.0 6.5 60 163-223 9-69 (136)
302 3ltm_A Alpha-REP4; protein eng 31.5 2.4E+02 0.0081 23.8 17.4 154 100-270 31-184 (211)
303 1qsa_A Protein (soluble lytic 30.8 4.7E+02 0.016 27.1 26.4 115 421-543 229-347 (618)
304 3us6_A Histidine-containing ph 30.5 1.7E+02 0.0059 23.7 7.4 22 486-507 99-120 (153)
305 3eyy_A Putative iron uptake re 30.4 1.3E+02 0.0045 24.1 6.6 53 97-151 14-66 (145)
306 2r9g_A AAA ATPase, central reg 30.0 2.6E+02 0.0089 23.9 8.3 36 185-221 27-62 (204)
307 2fe3_A Peroxide operon regulat 29.7 1.3E+02 0.0043 24.2 6.5 44 108-151 27-70 (145)
308 3c1d_A Protein ORAA, regulator 29.5 2.3E+02 0.0079 23.1 9.7 50 118-169 46-95 (159)
309 3aji_A 26S proteasome non-ATPa 29.4 1.9E+02 0.0065 24.8 8.4 20 281-300 141-160 (231)
310 2keb_A DNA polymerase subunit 28.3 1.6E+02 0.0054 21.7 5.7 34 497-530 26-59 (101)
311 1ug3_A EIF4GI, eukaryotic prot 27.9 2.8E+02 0.0096 26.1 9.5 148 444-598 14-166 (339)
312 3eyy_A Putative iron uptake re 27.8 1.1E+02 0.0038 24.5 5.7 58 163-222 10-67 (145)
313 2xig_A Ferric uptake regulatio 27.3 1.6E+02 0.0056 23.7 6.7 61 126-187 16-76 (150)
314 2w57_A Ferric uptake regulatio 25.9 1.3E+02 0.0046 24.2 6.0 61 162-223 7-68 (150)
315 3pvs_A Replication-associated 25.7 4.9E+02 0.017 25.6 12.9 37 220-256 268-304 (447)
316 2wvi_A Mitotic checkpoint seri 25.7 2.8E+02 0.0096 22.8 10.1 50 156-205 79-129 (164)
317 3lpz_A GET4 (YOR164C homolog); 25.2 4.3E+02 0.015 24.8 21.6 119 401-542 89-214 (336)
318 3kea_A K1L; tropism, ANK repea 25.0 1.9E+02 0.0067 26.1 7.8 143 143-301 34-183 (285)
319 3qye_A TBC1 domain family memb 24.8 1.9E+02 0.0064 27.1 7.7 47 501-547 209-255 (331)
320 3twr_A Tankyrase-2; ankyrin re 23.7 1.4E+02 0.0049 23.9 6.0 9 218-226 83-91 (165)
321 4ets_A Ferric uptake regulatio 23.6 2E+02 0.0067 23.6 6.6 59 163-222 24-84 (162)
322 2fu4_A Ferric uptake regulatio 23.5 1.9E+02 0.0065 20.1 6.0 58 163-221 8-66 (83)
323 3bge_A Predicted ATPase; struc 23.5 3.2E+02 0.011 23.3 7.7 37 185-221 20-56 (201)
324 1n11_A Ankyrin; clathrin, BAND 23.2 5.1E+02 0.017 24.9 16.8 50 491-549 319-371 (437)
325 3bu8_A Telomeric repeat-bindin 23.0 3.7E+02 0.013 23.3 11.7 48 153-200 88-142 (235)
326 3hra_A Ankyrin repeat family p 22.9 3.2E+02 0.011 22.5 9.4 11 114-124 81-91 (201)
327 3eiq_C Programmed cell death p 22.6 2E+02 0.0068 27.4 7.2 68 175-243 220-289 (358)
328 2dzn_A Probable 26S proteasome 22.6 2.3E+02 0.0077 24.1 7.5 147 144-300 6-161 (228)
329 3t8k_A Uncharacterized protein 22.5 3.3E+02 0.011 22.6 9.3 56 495-550 89-149 (186)
330 3ljn_A Hypothetical protein; a 22.5 1.4E+02 0.0047 28.3 6.4 22 281-302 175-196 (364)
331 3eiq_C Programmed cell death p 22.5 5E+02 0.017 24.6 15.7 106 481-591 218-330 (358)
332 3b7b_A Euchromatic histone-lys 22.4 3.5E+02 0.012 23.1 8.8 224 26-271 7-236 (237)
333 1mzb_A Ferric uptake regulatio 22.3 1.8E+02 0.0061 22.9 6.0 58 128-186 9-67 (136)
334 1bd8_A P19INK4D CDK4/6 inhibit 22.3 1.3E+02 0.0043 23.9 5.3 147 143-300 5-154 (156)
335 4aez_C MAD3, mitotic spindle c 22.2 3.9E+02 0.013 23.3 8.5 52 154-205 131-183 (223)
336 4g8k_A 2-5A-dependent ribonucl 21.9 4.7E+02 0.016 24.0 14.0 46 564-616 292-337 (337)
337 2pnn_A Transient receptor pote 21.8 4.1E+02 0.014 23.4 9.3 184 112-302 20-256 (273)
338 2b7e_A PRE-mRNA processing pro 21.7 64 0.0022 21.3 2.5 29 189-217 3-31 (59)
339 4fke_A Aminopeptidase N; zinc 21.7 8.1E+02 0.028 26.8 18.4 48 149-199 738-785 (909)
340 4fke_A Aminopeptidase N; zinc 21.7 8.1E+02 0.028 26.8 18.1 154 72-232 692-860 (909)
341 2fu4_A Ferric uptake regulatio 21.5 2E+02 0.007 19.9 5.6 58 128-186 8-66 (83)
342 3ljn_A Hypothetical protein; a 21.4 3.9E+02 0.013 24.9 9.5 16 183-198 92-107 (364)
343 2ion_A PDCD4, programmed cell 21.2 3.3E+02 0.011 22.0 9.9 61 446-511 14-76 (152)
344 3ygs_P Procaspase 9; apoptosis 20.9 2.4E+02 0.0081 20.7 5.9 33 187-223 52-84 (97)
345 2f6m_A Suppressor protein STP2 20.5 1.6E+02 0.0055 19.8 4.2 44 140-184 5-48 (65)
346 3mwm_A ZUR, putative metal upt 20.4 1.1E+02 0.0038 24.3 4.3 50 174-223 15-64 (139)
347 2f8y_A Notch homolog 1, transl 20.4 3.8E+02 0.013 22.5 8.5 18 214-231 129-146 (223)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.2e-36 Score=321.50 Aligned_cols=437 Identities=12% Similarity=-0.025 Sum_probs=364.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHH
Q 006615 69 PFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS 148 (638)
Q Consensus 69 ~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~ 148 (638)
+..++..+.+.|++++|+.+|+.+.. ..|+..++..++.+|.+.|++++|..+|+.+... +++..+++.++.+|.
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLV 161 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHH
Confidence 34578899999999999999999984 3567789999999999999999999999988653 578889999999999
Q ss_pred hcCCHHHHHHHHHHH-Hhc--------------CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH--
Q 006615 149 TSGDLELVLSTWNEY-RQR--------------AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT-- 211 (638)
Q Consensus 149 ~~g~~~~A~~l~~~m-~~~--------------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~-- 211 (638)
+.|++++|..+|+++ ... +.+++..+|+.++.+|.+.|++++|.++|++|.+.+.. +...+.
T Consensus 162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l 240 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQL 240 (597)
T ss_dssp HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHH
Confidence 999999999999953 222 23446889999999999999999999999999986422 333333
Q ss_pred ------------------------------------HHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHcc
Q 006615 212 ------------------------------------VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV 255 (638)
Q Consensus 212 ------------------------------------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 255 (638)
.++..|.+.|++++|.++|+++.+. .++..+|+.++.+|.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHT
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHh
Confidence 2355667889999999999999865 58999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCcccc
Q 006615 256 ERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIA 335 (638)
Q Consensus 256 g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (638)
|++++|.++|+++.+.+......+..++..+.+.|++++|.++++++....
T Consensus 319 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------------------------- 369 (597)
T 2xpi_A 319 SRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH----------------------------- 369 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------------------
T ss_pred cCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-----------------------------
Confidence 999999999999987765444455688899999999999999999884211
Q ss_pred ccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHH
Q 006615 336 YGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415 (638)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 415 (638)
+........++..+...|++++|.+.|+.+.... +.+..+|+.++.+
T Consensus 370 -------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~ 416 (597)
T 2xpi_A 370 -------------------------------PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--PQFGPAWIGFAHS 416 (597)
T ss_dssp -------------------------------TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred -------------------------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 0011122346778888999999999999886432 3367899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCC
Q 006615 416 LARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR 495 (638)
Q Consensus 416 ~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 495 (638)
|.+.|++++|.++|+++.+.+. .+..++..++.+|.+.|++++|.++|+++.+.. |+...+|+.++..|.+.|+
T Consensus 417 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~ 490 (597)
T 2xpi_A 417 FAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-----QYDPLLLNELGVVAFNKSD 490 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHhCC
Confidence 9999999999999999987754 377889999999999999999999999988753 2234789999999999999
Q ss_pred hHHHHHHHHHHHhC----CCCcc--hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCC
Q 006615 496 DFDAINVLEEMIFS----GIVPD--VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNL 569 (638)
Q Consensus 496 ~~~A~~l~~~m~~~----g~~p~--~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~ 569 (638)
+++|.++|++|.+. +..|+ ..+|+.+..+|.+.|++++|.+.|+++.+.+
T Consensus 491 ~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------------ 546 (597)
T 2xpi_A 491 MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS------------------------ 546 (597)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------------------------
T ss_pred HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------------------------
Confidence 99999999999876 67787 6799999999999999999999999988753
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccCC
Q 006615 570 MPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDV 605 (638)
Q Consensus 570 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (638)
..+..+|..+..+|.+.|++++|.+.++++.+.++.
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 236788999999999999999999999999998753
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7e-33 Score=298.93 Aligned_cols=457 Identities=10% Similarity=-0.055 Sum_probs=330.4
Q ss_pred HcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHH
Q 006615 77 RSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELV 156 (638)
Q Consensus 77 ~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 156 (638)
...|.+..+...+..+. .++...|+.++..+.+.|++++|..+|+++.. ..|+..++..++.+|.+.|++++|
T Consensus 64 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDS-----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccCccCCCCCccccch-----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHH
Confidence 34555555555554332 24667899999999999999999999999985 347778899999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHHHcC
Q 006615 157 LSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE---------------GAIPNSRTYTVMIEHLVNLG 221 (638)
Q Consensus 157 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~ty~~li~~~~~~g 221 (638)
..+|+++... +++..+++.++.+|.+.|++++|.++|+++... |..++..+|+.++.+|.+.|
T Consensus 137 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 214 (597)
T 2xpi_A 137 KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS 214 (597)
T ss_dssp HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC
Confidence 9999988653 578999999999999999999999999953221 33446899999999999999
Q ss_pred CHHHHHHHHHhcccCCCcc-CHhHHH--------------------------------------HHHHHHHccCCHHHHH
Q 006615 222 KLDSALEVFSALPLMRIKR-TSKQYL--------------------------------------ILVEGFVGVERFDEAK 262 (638)
Q Consensus 222 ~~~~A~~~~~~m~~~g~~p-~~~~~~--------------------------------------~li~~~~~~g~~~~A~ 262 (638)
++++|.++|++|.+.+ | +...+. .++..|.+.|++++|.
T Consensus 215 ~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 292 (597)
T 2xpi_A 215 NFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAE 292 (597)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 9999999999998743 3 233333 3355666778888888
Q ss_pred HHHHHHHhCCCCCCHHHH-HHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCcccccccccc
Q 006615 263 SLLNEMRDDGKFPGRAMR-VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLK 341 (638)
Q Consensus 263 ~l~~~m~~~g~~p~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (638)
++|+++.+. .++..++ .+...+.+.|++++|.++|+++.....
T Consensus 293 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------------------------------- 336 (597)
T 2xpi_A 293 DYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP---------------------------------- 336 (597)
T ss_dssp HHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------------------------------
T ss_pred HHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc----------------------------------
Confidence 888887654 3455544 777888888888888888887742211
Q ss_pred CCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCC
Q 006615 342 PWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGH 421 (638)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 421 (638)
........++..+...|++++|.++|+.+.... +.+..+|+.+..+|.+.|+
T Consensus 337 --------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 388 (597)
T 2xpi_A 337 --------------------------YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH--PEKAVTWLAVGIYYLCVNK 388 (597)
T ss_dssp --------------------------TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSHHHHHHHHHHHHHTTC
T ss_pred --------------------------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHhcc
Confidence 011122345556667788888888888775322 4467778888888888888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHH
Q 006615 422 VELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAIN 501 (638)
Q Consensus 422 ~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 501 (638)
+++|.++|+++.+.... +..+|+.++.+|.+.|++++|.++|+++.+.. |+...+|+.++.+|.+.|++++|.+
T Consensus 389 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~ 462 (597)
T 2xpi_A 389 ISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-----QGTHLPYLFLGMQHMQLGNILLANE 462 (597)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----TTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888765432 56788888888888888888888888877642 2223678888888888888888888
Q ss_pred HHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCC--HHHHHHH
Q 006615 502 VLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPD--AATKELL 579 (638)
Q Consensus 502 l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~--~~~~~~l 579 (638)
+|++|.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.. .+.+..|+ ..+|..+
T Consensus 463 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------------~~~~~~p~~~~~~~~~l 522 (597)
T 2xpi_A 463 YLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV-------------------KKTQSNEKPWAATWANL 522 (597)
T ss_dssp HHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------HHSCCCSGGGHHHHHHH
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh-------------------hccccchhhHHHHHHHH
Confidence 888887653 2367778888888888888888888888877531 12244666 6789999
Q ss_pred HHHHhccCcHHHHHHHHHHHHHccCCCCcccccceee-eeccccchhccccccccc
Q 006615 580 KKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWA-VSSADLTRVHSIYRNSIT 634 (638)
Q Consensus 580 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~w~-~~~~~~~~~~~~~~~~~~ 634 (638)
+.+|.+.|++++|.++++++.+.++..+......+.. ...++.+++...|++++.
T Consensus 523 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 523 GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 9999999999999999999999874322111111111 246777788777776653
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=9e-32 Score=278.06 Aligned_cols=182 Identities=17% Similarity=0.194 Sum_probs=127.4
Q ss_pred HHHHHHHHHHhCCCCCch-HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC---------hH
Q 006615 120 ELKTLIGDISSSKFLNVS-VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK---------NF 189 (638)
Q Consensus 120 ~a~~l~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~---------~~ 189 (638)
.+..+.+.+.+.+..+.+ .+++.+|++|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 445556666666654433 35778888888888888888888888888888888888888888877654 57
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006615 190 EAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269 (638)
Q Consensus 190 ~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 269 (638)
+|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 78888888888888888888888888888888888888888888888888888888888888888888888888888887
Q ss_pred hCCCCCCHHHH-HHHHHHHHcCChHHHHHHHHH
Q 006615 270 DDGKFPGRAMR-VALERMQEMGFIQGANEFLRE 301 (638)
Q Consensus 270 ~~g~~p~~~~~-~ll~~~~~~g~~~~a~~~~~~ 301 (638)
+.|+.||..+| .+|.+|++.|++++|.+++++
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~ 200 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQR 200 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 77665544433 333333333333333333333
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=1.8e-31 Score=275.78 Aligned_cols=204 Identities=12% Similarity=0.090 Sum_probs=178.0
Q ss_pred HHHHHHHHHHcCCCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCC---------H
Q 006615 84 SALSIMEALKSNPNFSHN-QSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD---------L 153 (638)
Q Consensus 84 ~Al~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~---------~ 153 (638)
.+..+.+.+.+. +..+. ...++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +
T Consensus 8 ~~e~L~~~~~~k-~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 8 PSENLSRKAKKK-AIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred hHHHHHHHHHHh-cccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 344555666655 34443 346899999999999999999999999999999999999999999998764 7
Q ss_pred HHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 006615 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233 (638)
Q Consensus 154 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 233 (638)
+.|.++|++|...|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHH
Q 006615 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRV-ALERMQE 288 (638)
Q Consensus 234 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~-ll~~~~~ 288 (638)
.+.|+.||..||++||.+|++.|++++|.++|++|.+.|..|+..|+. ++..|+.
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999994 5555554
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=8.1e-24 Score=214.92 Aligned_cols=363 Identities=11% Similarity=0.003 Sum_probs=291.2
Q ss_pred HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG 151 (638)
Q Consensus 72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g 151 (638)
+...+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+...|..+...|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 3456778899999999998887543 2344466677777888899999999998877653 556778899999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 006615 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN-SRTYTVMIEHLVNLGKLDSALEVF 230 (638)
Q Consensus 152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~ 230 (638)
++++|...|+++...+ +.+..+|..+..++.+.|++++|.+.|+++.+. .|+ ...+..+...+...|++++|.+.|
T Consensus 82 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999999999998764 445667999999999999999999999999885 354 456667777888889999999999
Q ss_pred HhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccc
Q 006615 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKN 310 (638)
Q Consensus 231 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 310 (638)
+++.+.. +.+..+|+.+...+.+.|++++|...|+++.+.+......++.+...+...|++++|...+++...
T Consensus 159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~------ 231 (388)
T 1w3b_A 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS------ 231 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH------
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------
Confidence 9887643 235678899999999999999999999999875433222334666777777777777777765521
Q ss_pred cccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHH
Q 006615 311 VRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW 390 (638)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 390 (638)
T Consensus 232 -------------------------------------------------------------------------------- 231 (388)
T 1w3b_A 232 -------------------------------------------------------------------------------- 231 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhc
Q 006615 391 HFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470 (638)
Q Consensus 391 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 470 (638)
.. +.+..++..+..++.+.|++++|.+.|+++.+.+.. +..++..+..+|.+.|++++|...|+++.+.
T Consensus 232 --------~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 232 --------LS--PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp --------HC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred --------hC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 11 225678888999999999999999999999987543 5778999999999999999999999998876
Q ss_pred cCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544 (638)
Q Consensus 471 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 544 (638)
.|+...+|+.+...+.+.|++++|.+.|+++.+.. +.+..++..+..+|.+.|++++|.+.|+++.+.
T Consensus 301 -----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 301 -----CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp -----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred -----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 33345789999999999999999999999998752 335778999999999999999999999999874
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=8.8e-24 Score=214.66 Aligned_cols=364 Identities=15% Similarity=0.060 Sum_probs=302.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC
Q 006615 108 LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187 (638)
Q Consensus 108 li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 187 (638)
+...+.+.|++++|...+..+.+.. +.+...+..+...+.+.|++++|...++...... +.+..+|+.+..++.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3455678899999999999887653 3445567778888899999999999999888764 5678899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccC-HhHHHHHHHHHHccCCHHHHHHHH
Q 006615 188 NFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT-SKQYLILVEGFVGVERFDEAKSLL 265 (638)
Q Consensus 188 ~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~ 265 (638)
+++|.+.|+++.+. .| +..+|..+...+.+.|++++|.+.|+++.+. .|+ ...+..+...+...|++++|.+.|
T Consensus 83 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 83 LQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 99999999999885 35 4667999999999999999999999998764 354 556777888899999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCC
Q 006615 266 NEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLD 345 (638)
Q Consensus 266 ~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (638)
+++..........+..+...+...|++++|...|+++...
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------------------------------------- 198 (388)
T 1w3b_A 159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL---------------------------------------- 198 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----------------------------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------------------------------
Confidence 9998764332234457778888999999999888876321
Q ss_pred hhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHH
Q 006615 346 PKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELV 425 (638)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 425 (638)
. +.+...|..+...+...|++++|
T Consensus 199 ------------------------------------------------------~--p~~~~~~~~lg~~~~~~~~~~~A 222 (388)
T 1w3b_A 199 ------------------------------------------------------D--PNFLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp ------------------------------------------------------C--TTCHHHHHHHHHHHHTTTCTTHH
T ss_pred ------------------------------------------------------C--CCcHHHHHHHHHHHHHcCCHHHH
Confidence 0 12456788888999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHH
Q 006615 426 DRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEE 505 (638)
Q Consensus 426 ~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 505 (638)
...+++....... +..++..+..+|.+.|++++|...|+++.+. .|+...+|..+...+.+.|++++|.+.|++
T Consensus 223 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 296 (388)
T 1w3b_A 223 VAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL-----QPHFPDAYCNLANALKEKGSVAEAEDCYNT 296 (388)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----CSSCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999998876543 6788999999999999999999999998875 333346899999999999999999999999
Q ss_pred HHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 006615 506 MIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWK 585 (638)
Q Consensus 506 m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~ 585 (638)
+.+.. +.+..+|+.+...+...|++++|.+.++++.+. .|+ +..++..+...|.+
T Consensus 297 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~----------------------~~~~~~~l~~~~~~ 351 (388)
T 1w3b_A 297 ALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPE----------------------FAAAHSNLASVLQQ 351 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTT----------------------CHHHHHHHHHHHHT
T ss_pred HHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC----------------------cHHHHHHHHHHHHH
Confidence 98863 457889999999999999999999999999864 222 46778899999999
Q ss_pred cCcHHHHHHHHHHHHHccC
Q 006615 586 EGRRKEAAAVEERCEKIND 604 (638)
Q Consensus 586 ~g~~~~A~~~~~~~~~~~~ 604 (638)
.|++++|.+.++++.+..+
T Consensus 352 ~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 352 QGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp TTCCHHHHHHHHHHHTTCT
T ss_pred cCCHHHHHHHHHHHHhhCC
Confidence 9999999999999998654
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.6e-20 Score=196.48 Aligned_cols=438 Identities=9% Similarity=-0.027 Sum_probs=275.0
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhc
Q 006615 71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS 150 (638)
Q Consensus 71 ~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~ 150 (638)
.....+.+.|++++|+..|+.+.+.. |+...+..+..++...|++++|...++++.+.+ +.+...+..+..+|.+.
T Consensus 11 ~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 11 DKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHH
Confidence 34456667777888888887777543 566677777777777777777777777776643 34455677777777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCHHHHH
Q 006615 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL---GKLDSAL 227 (638)
Q Consensus 151 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~---g~~~~A~ 227 (638)
|++++|...|+++...+ +++......++..+.+......+.+.+..+...+..|+...+..-....... .....+.
T Consensus 87 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred hhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 77777777777777665 3444555555555544444444444443332222222211111110000000 0111111
Q ss_pred HHHHhcccCC------CccCHhHHHHHHHHHHc---cCCHHHHHHHHHHHHh-----CCCCCC-------H--HHHHHHH
Q 006615 228 EVFSALPLMR------IKRTSKQYLILVEGFVG---VERFDEAKSLLNEMRD-----DGKFPG-------R--AMRVALE 284 (638)
Q Consensus 228 ~~~~~m~~~g------~~p~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~g~~p~-------~--~~~~ll~ 284 (638)
..+....... -..+...+..+...+.. .|++++|..+|+++.. ..-.|+ . ..+.+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 1111111000 01113333333333333 6667777776666655 311221 1 1124455
Q ss_pred HHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHh
Q 006615 285 RMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLL 364 (638)
Q Consensus 285 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (638)
.+...|++++|...+++......
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~~--------------------------------------------------------- 268 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELFP--------------------------------------------------------- 268 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCC---------------------------------------------------------
T ss_pred HHHHCCCHHHHHHHHHHHHhhCc---------------------------------------------------------
Confidence 56666777777766666532110
Q ss_pred hcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 006615 365 ADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTI 444 (638)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~ 444 (638)
. ......++..+...|++++|.+.|....... +.+...+..+...+...|++++|...+++....... +...+
T Consensus 269 ---~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 341 (514)
T 2gw1_A 269 ---R-VNSYIYMALIMADRNDSTEYYNYFDKALKLD--SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPY 341 (514)
T ss_dssp ---C-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHH
T ss_pred ---c-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHH
Confidence 0 1112234555566677777777776665433 335667888999999999999999999999887644 56788
Q ss_pred HHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC-Ccc----hhhHH
Q 006615 445 RLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI-VPD----VQTFS 519 (638)
Q Consensus 445 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~ 519 (638)
..+...|...|++++|...++.+.+..+ +....|..+...+.+.|++++|.+.|+++.+... .++ ..+|.
T Consensus 342 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 416 (514)
T 2gw1_A 342 IQLACLAYRENKFDDCETLFSEAKRKFP-----EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLV 416 (514)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHHHST-----TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcc-----cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHH
Confidence 8999999999999999999999887532 2236889999999999999999999999877421 112 33889
Q ss_pred HHHHHHHc---cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 006615 520 GLMYHFAL---QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVE 596 (638)
Q Consensus 520 ~li~~~~~---~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 596 (638)
.+...+.. .|++++|.+.++.+.+.. |+ +..++..+...+.+.|++++|.+.+
T Consensus 417 ~l~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~----------------------~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 417 GKATLLTRNPTVENFIEATNLLEKASKLD--PR----------------------SEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHTSCCTTHHHHHHHHHHHHHHHC--TT----------------------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHHhC--cc----------------------cHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999 999999999999988742 22 4567788999999999999999999
Q ss_pred HHHHHccCCC
Q 006615 597 ERCEKINDVP 606 (638)
Q Consensus 597 ~~~~~~~~~~ 606 (638)
++..+.++..
T Consensus 473 ~~a~~~~~~~ 482 (514)
T 2gw1_A 473 EESADLARTM 482 (514)
T ss_dssp HHHHHHCSSH
T ss_pred HHHHHhcccc
Confidence 9999987533
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=3e-19 Score=185.04 Aligned_cols=325 Identities=13% Similarity=0.045 Sum_probs=203.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 006615 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS 180 (638)
Q Consensus 101 ~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~ 180 (638)
+...+..+...+.+.|++++|..+|+++.+.. +.+...+..+..+|.+.|++++|...|+++.+.+ +.+..+|..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 34456666666777777777777777666532 3455666667777777777777777777776654 334666777777
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHH------------HHHHHcCCHHHHHHHHHhcccCCCccCHhH
Q 006615 181 VYAKTGKNFEAVETFRQVIDEGAIPNS----RTYTVMI------------EHLVNLGKLDSALEVFSALPLMRIKRTSKQ 244 (638)
Q Consensus 181 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~ty~~li------------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 244 (638)
+|.+.|++++|.+.|+++.+. .|+. .++..+. ..+.+.|++++|.+.|+++.+.. +.+..+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 777777777777777777663 3432 3444443 33667777777777777766532 235666
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCcccc
Q 006615 245 YLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDE 324 (638)
Q Consensus 245 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (638)
+..+..+|.+.|++++|.+.|+++.+........++.+...+...|++++|...++++.....
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----------------- 242 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ----------------- 242 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------
Confidence 777777777777777777777777654322222334666667777777777777766531100
Q ss_pred ccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcC
Q 006615 325 NDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTH 404 (638)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p 404 (638)
....+...+..+ .
T Consensus 243 ------------------------------------------------------------~~~~~~~~~~~~-------~ 255 (450)
T 2y4t_A 243 ------------------------------------------------------------DHKRCFAHYKQV-------K 255 (450)
T ss_dssp ------------------------------------------------------------TCHHHHHHHHHH-------H
T ss_pred ------------------------------------------------------------ChHHHHHHHHHH-------H
Confidence 000000000000 0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHH
Q 006615 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP----FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM 480 (638)
Q Consensus 405 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 480 (638)
....+..+...|.+.|++++|..+|+++...... + ...+..+..++.+.|++++|...++.+.+. .|+..
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~p~~~ 329 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-----EPDNV 329 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CcccH
Confidence 1112233477788888888888888888775432 2 346677778888888888888888887654 33334
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcc-hhhHHHHH
Q 006615 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD-VQTFSGLM 522 (638)
Q Consensus 481 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li 522 (638)
.+|..+..+|.+.|++++|.+.|+++.+. .|+ ...+..+.
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 370 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 67888888888888888888888888774 454 33444443
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.6e-19 Score=188.86 Aligned_cols=375 Identities=9% Similarity=-0.051 Sum_probs=254.6
Q ss_pred CCHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHH
Q 006615 67 LDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQW 146 (638)
Q Consensus 67 ~~~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~ 146 (638)
..+..+..++...|++++|+..|+.+.+.. +.+...+..+..++...|++++|...|+++.+.+. ++......++..
T Consensus 40 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ 116 (514)
T 2gw1_A 40 VFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLER 116 (514)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHH
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHH
Confidence 345556788889999999999999998653 34556899999999999999999999999988653 344444555555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC--------------------------------------------CCHHhHHHHHHHH
Q 006615 147 YSTSGDLELVLSTWNEYRQRAKL--------------------------------------------LSTESYNIVMSVY 182 (638)
Q Consensus 147 ~~~~g~~~~A~~l~~~m~~~~~~--------------------------------------------p~~~~~~~li~~~ 182 (638)
+.+......+.+.+..+...+.. .+...+......+
T Consensus 117 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (514)
T 2gw1_A 117 NLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSN 196 (514)
T ss_dssp HHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 55444444443333222211111 1133333333333
Q ss_pred Hh---cCChHHHHHHHHHHHH-----cCCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHH
Q 006615 183 AK---TGKNFEAVETFRQVID-----EGAIP--------NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYL 246 (638)
Q Consensus 183 ~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 246 (638)
.. .|++++|...|+++.+ ..-.| +..++..+...+...|++++|.+.|+++.+.. |+..+|.
T Consensus 197 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~ 274 (514)
T 2gw1_A 197 LYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYI 274 (514)
T ss_dssp HSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHH
Confidence 33 6777777777777766 21111 24455666666777777777777777766543 3366666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCcccccc
Q 006615 247 ILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDEND 326 (638)
Q Consensus 247 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (638)
.+...+...|++++|...++++...........+.+...+...|++++|...++...
T Consensus 275 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----------------------- 331 (514)
T 2gw1_A 275 YMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAK----------------------- 331 (514)
T ss_dssp HHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-----------------------
Confidence 677777777777777777777766544333344455566666666666666666542
Q ss_pred CCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCH
Q 006615 327 DNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDV 406 (638)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 406 (638)
... +.+.
T Consensus 332 -----------------------------------------------------------------------~~~--~~~~ 338 (514)
T 2gw1_A 332 -----------------------------------------------------------------------ELD--PENI 338 (514)
T ss_dssp -----------------------------------------------------------------------HTC--SSCS
T ss_pred -----------------------------------------------------------------------HhC--hhhH
Confidence 211 2245
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcch-hHHHHHHH
Q 006615 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKF-KLMLLYSS 485 (638)
Q Consensus 407 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~ 485 (638)
..+..+...+...|++++|..+++++.+.... +..++..+...|.+.|++++|...++.+....+..... .....|..
T Consensus 339 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 417 (514)
T 2gw1_A 339 FPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVG 417 (514)
T ss_dssp HHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHH
Confidence 57788888899999999999999998876533 56788888899999999999999999877642221110 00137888
Q ss_pred HHHHHHc---cCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615 486 LLRTLTK---CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544 (638)
Q Consensus 486 li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 544 (638)
+...+.. .|++++|.+.|+++.+.. +.+..++..+...|.+.|++++|.+.|+++.+.
T Consensus 418 l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 418 KATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999 999999999999998753 235677888999999999999999999999875
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=5.6e-19 Score=182.96 Aligned_cols=313 Identities=13% Similarity=0.068 Sum_probs=252.5
Q ss_pred CCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006615 134 LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVM 213 (638)
Q Consensus 134 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~l 213 (638)
+.+...+..+...|.+.|++++|..+|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.+. .+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHH
Confidence 4566778899999999999999999999998864 55789999999999999999999999999998642 368889999
Q ss_pred HHHHHHcCCHHHHHHHHHhcccCCCccC-H---hHHHHHHH------------HHHccCCHHHHHHHHHHHHhCCCCCCH
Q 006615 214 IEHLVNLGKLDSALEVFSALPLMRIKRT-S---KQYLILVE------------GFVGVERFDEAKSLLNEMRDDGKFPGR 277 (638)
Q Consensus 214 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~---~~~~~li~------------~~~~~g~~~~A~~l~~~m~~~g~~p~~ 277 (638)
...|.+.|++++|.+.|+++.+.. |+ . ..|..+.. .+.+.|++++|...|+++.........
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 178 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAE 178 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 999999999999999999998753 44 3 56665544 488899999999999998775433222
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCC
Q 006615 278 AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWS 357 (638)
Q Consensus 278 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (638)
..+.+...+.+.|++++|...++++...
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------------------------------------------- 206 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKL---------------------------------------------------- 206 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHH----------------------------------------------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------------------------------------------
Confidence 3346778888888888888888776311
Q ss_pred HHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 006615 358 PEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGM 437 (638)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 437 (638)
. +.+..+|..+..+|...|++++|...|+++.....
T Consensus 207 ------------------------------------------~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 242 (450)
T 2y4t_A 207 ------------------------------------------K--NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 242 (450)
T ss_dssp ------------------------------------------H--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ------------------------------------------C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 0 23677889999999999999999999999986643
Q ss_pred CCCHHHHHHH------------HHHHcccCCHHHHHHHHHhchhccCCCcchh-HHHHHHHHHHHHHccCChHHHHHHHH
Q 006615 438 RLPFSTIRLI------------IDFYGISKKADAALKAFHDDRTLCGPISKFK-LMLLYSSLLRTLTKCKRDFDAINVLE 504 (638)
Q Consensus 438 ~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~ 504 (638)
. +...+..+ ...|.+.|++++|...|+.+.+..+. .+. ....|..+...+.+.|++++|++.++
T Consensus 243 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 243 D-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS--IAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp T-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred C-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3 44444444 78899999999999999999876433 111 12578899999999999999999999
Q ss_pred HHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhh
Q 006615 505 EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYM 552 (638)
Q Consensus 505 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~ 552 (638)
++.+.. +.+..+|..+..+|...|++++|.+.++++.+ +.|+...
T Consensus 320 ~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~ 364 (450)
T 2y4t_A 320 EVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQ 364 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHH
T ss_pred HHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHH
Confidence 998752 23678999999999999999999999999997 4566433
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=3.4e-18 Score=181.44 Aligned_cols=431 Identities=8% Similarity=-0.030 Sum_probs=303.9
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhc
Q 006615 71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS 150 (638)
Q Consensus 71 ~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~ 150 (638)
.....+.+.|++++|+..|+.+.+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+...+.+.
T Consensus 30 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 30 NRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHc
Confidence 36678889999999999999998653 3456788999999999999999999999988754 45677788899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHcCCHH
Q 006615 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE------GAIPNSRTYTVMIEHLVNLGKLD 224 (638)
Q Consensus 151 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~ty~~li~~~~~~g~~~ 224 (638)
|++++|...|+.+ ... |+ ..+..+..+...+....|.+.++++... ...|+. ..+..+....+.+
T Consensus 107 g~~~~A~~~~~~~-~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 107 GNFTDAMFDLSVL-SLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFGIFDSH 177 (537)
T ss_dssp TCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHHTSCHH
T ss_pred CCHHHHHHHHHHH-hcC--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHHhcChH
Confidence 9999999999744 222 22 2233355566667778899999998653 223343 3344455666777
Q ss_pred HHHHHHHhcccCCCccCHh-HHHHHHHHHHcc--------CCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHH
Q 006615 225 SALEVFSALPLMRIKRTSK-QYLILVEGFVGV--------ERFDEAKSLLNEMRDDGKFPGRA-------MRVALERMQE 288 (638)
Q Consensus 225 ~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-------~~~ll~~~~~ 288 (638)
.+...+...... .+... ....+...+... |++++|..+|+++.+........ .+.+...+..
T Consensus 178 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence 766655554432 22211 333333333322 47888888888887654332221 2244566778
Q ss_pred cCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCC
Q 006615 289 MGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAK 368 (638)
Q Consensus 289 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (638)
.|++++|...++....... .
T Consensus 256 ~~~~~~A~~~~~~~~~~~~------------------------------------------------------------~ 275 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLHP------------------------------------------------------------T 275 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCC------------------------------------------------------------C
T ss_pred cccHHHHHHHHHHHHhcCC------------------------------------------------------------C
Confidence 8888999888887642110 0
Q ss_pred cccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006615 369 FVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLII 448 (638)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li 448 (638)
......++..+...|++++|.+.|....... +.+..+|..+...+...|++++|.+.+++....... +...+..+.
T Consensus 276 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 351 (537)
T 3fp2_A 276 -PNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLA 351 (537)
T ss_dssp -HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHH
T ss_pred -chHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 1122345666777888888888888876443 335778899999999999999999999999887643 557888899
Q ss_pred HHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC-----CcchhhHHHHHH
Q 006615 449 DFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI-----VPDVQTFSGLMY 523 (638)
Q Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----~p~~~t~~~li~ 523 (638)
..|...|++++|...++++.+.. |+....|..+...+.+.|++++|.+.|+++.+... ......+..+..
T Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~ 426 (537)
T 3fp2_A 352 CLLYKQGKFTESEAFFNETKLKF-----PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT 426 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-----TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH
Confidence 99999999999999999988763 33346888999999999999999999999876421 111122344456
Q ss_pred HHHcc----------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 006615 524 HFALQ----------GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAA 593 (638)
Q Consensus 524 ~~~~~----------g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 593 (638)
.+... |++++|...|+++.+.. |+ +...+..+...|.+.|++++|.
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~----------------------~~~~~~~l~~~~~~~g~~~~A~ 482 (537)
T 3fp2_A 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELD--PR----------------------SEQAKIGLAQLKLQMEKIDEAI 482 (537)
T ss_dssp HHHHHHTC----CCHHHHHHHHHHHHHHHHHC--TT----------------------CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhhccchhhhHhHHHHHHHHHHHHHHhC--CC----------------------CHHHHHHHHHHHHHhccHHHHH
Confidence 67777 99999999999988742 22 4567888999999999999999
Q ss_pred HHHHHHHHccCCCCc
Q 006615 594 AVEERCEKINDVPSL 608 (638)
Q Consensus 594 ~~~~~~~~~~~~~~~ 608 (638)
+.+++..+..+..+.
T Consensus 483 ~~~~~al~~~~~~~~ 497 (537)
T 3fp2_A 483 ELFEDSAILARTMDE 497 (537)
T ss_dssp HHHHHHHHHC--CHH
T ss_pred HHHHHHHHhCCCcHH
Confidence 999999998764443
No 12
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=4.2e-20 Score=195.52 Aligned_cols=136 Identities=15% Similarity=0.150 Sum_probs=105.5
Q ss_pred CchHhHHHHHHHHHhcCCHHHHHHHHHHHH---hcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 006615 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYR---QRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYT 211 (638)
Q Consensus 135 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~---~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~ 211 (638)
.-..|||+||++||+.|++++|.++|++|. ..|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||..|||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 344578888888888888888888887765 34788888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHcCC-HHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 006615 212 VMIEHLVNLGK-LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP 275 (638)
Q Consensus 212 ~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 275 (638)
+||.++|+.|+ .++|.++|++|.+.|+.||..+|++++.+..+. .+++..+++ ..+..|
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p 264 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSL 264 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCC
Confidence 88888888887 467888888888888888888888888666554 333444443 334444
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=9.9e-16 Score=152.97 Aligned_cols=137 Identities=9% Similarity=0.047 Sum_probs=94.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH------------HHHHHHcccCCHHHHHHHHHhchhccC
Q 006615 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR------------LIIDFYGISKKADAALKAFHDDRTLCG 472 (638)
Q Consensus 405 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~------------~li~~~~~~g~~~~A~~~~~~~~~~~~ 472 (638)
+...+..+...+...|++++|...++...+.... +...+. .+...+.+.|++++|...++.+.+..+
T Consensus 187 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 265 (359)
T 3ieg_A 187 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP 265 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4455666666667777777777777766654432 222222 225567788888888888888776543
Q ss_pred CCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544 (638)
Q Consensus 473 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 544 (638)
..+... ...|..+...+.+.|++++|.+.+++..+.. +.+..+|..+...|...|++++|.+.|+++.+.
T Consensus 266 ~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 266 SVAEYT-VRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp SSHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CchHHH-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 321111 1346667788888999999999999888752 236778888888999999999999999988874
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.79 E-value=2.9e-17 Score=174.25 Aligned_cols=442 Identities=11% Similarity=0.002 Sum_probs=304.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 006615 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVY 182 (638)
Q Consensus 103 ~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 182 (638)
..+..+...+.+.|++++|...|+++.+.. +.+...+..+..+|.+.|++++|...|+++.+.+ +.+..+|..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 457777888889999999999999988754 4567788889999999999999999999998875 45688889999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCC--CccCHhHHHHHHHHHHccCCHHH
Q 006615 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMR--IKRTSKQYLILVEGFVGVERFDE 260 (638)
Q Consensus 183 ~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~ 260 (638)
.+.|++++|.+.|+.+.. .|+. ....+..+...+...+|.+.++++.... ..+........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSL---NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHHHHhc---CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 999999999999963322 2332 2233445666666788888888876531 01111122334455566666666
Q ss_pred HHHHHHHHHhCCCCCCHHHH-HHHHHH---------HHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCC
Q 006615 261 AKSLLNEMRDDGKFPGRAMR-VALERM---------QEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNS 330 (638)
Q Consensus 261 A~~l~~~m~~~g~~p~~~~~-~ll~~~---------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (638)
+...+.+... ..+....+ ..+..+ ...|++++|..+++.+...........
T Consensus 179 ~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~----------------- 239 (537)
T 3fp2_A 179 EVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLR----------------- 239 (537)
T ss_dssp HHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHH-----------------
T ss_pred HHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhh-----------------
Confidence 6655443322 22222221 222211 223589999999998865443211000
Q ss_pred CccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHH
Q 006615 331 GVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410 (638)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 410 (638)
. .........+..+...|++++|.+.|...... .|+...+.
T Consensus 240 -------------------------------~-----~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~ 280 (537)
T 3fp2_A 240 -------------------------------E-----NAALALCYTGIFHFLKNNLLDAQVLLQESINL---HPTPNSYI 280 (537)
T ss_dssp -------------------------------H-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHH
T ss_pred -------------------------------H-----HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc---CCCchHHH
Confidence 0 00011233566777789999999999998654 45678888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHH
Q 006615 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTL 490 (638)
Q Consensus 411 ~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 490 (638)
.+...+...|++++|.+.+++....... +..++..+...|...|++++|...|+.+.+.. |+....|..+...+
T Consensus 281 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~la~~~ 354 (537)
T 3fp2_A 281 FLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-----PENVYPYIQLACLL 354 (537)
T ss_dssp HHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCSHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHH
Confidence 9999999999999999999999887643 67889999999999999999999999988763 33336899999999
Q ss_pred HccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCC
Q 006615 491 TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLM 570 (638)
Q Consensus 491 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~ 570 (638)
.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. |+. ....
T Consensus 355 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~----------------~~~~ 415 (537)
T 3fp2_A 355 YKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE--EVQ----------------EKIH 415 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHC----------------SSCS
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--Ccc----------------hhhH
Confidence 99999999999999998863 3356688899999999999999999999988642 211 0111
Q ss_pred CCHHHHHHHHHHHhcc----------CcHHHHHHHHHHHHHccCCCCcccccceee-eeccccchhccccccccc
Q 006615 571 PDAATKELLKKSLWKE----------GRRKEAAAVEERCEKINDVPSLALRGHIWA-VSSADLTRVHSIYRNSIT 634 (638)
Q Consensus 571 p~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~w~-~~~~~~~~~~~~~~~~~~ 634 (638)
.....+..+...+.+. |++++|.+.+++..+..+..+.......+. ...++.+++...|++++.
T Consensus 416 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp STTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1223344455667777 999999999999999865433222111111 246677777777776543
No 15
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=6.5e-19 Score=186.54 Aligned_cols=150 Identities=11% Similarity=0.032 Sum_probs=129.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHH---hCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHH
Q 006615 102 QSTLHALATVLAKSQRNHELKTLIGDIS---SSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIV 178 (638)
Q Consensus 102 ~~~~~~li~~~~~~~~~~~a~~l~~~~~---~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 178 (638)
..+|+++|.+|++.|++++|..+|+.|. ..|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||+.|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999998876 4589999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccC------HhHHHHHHHH
Q 006615 179 MSVYAKTGKN-FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT------SKQYLILVEG 251 (638)
Q Consensus 179 i~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~li~~ 251 (638)
|+++|+.|+. ++|.++|++|.+.|+.||..||++++.++.+.+-++.+.++. .++.|+ ..+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~-----P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVK-----PTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGC-----CCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhC-----cccCCCCCCcccccchHHHHHH
Confidence 9999999985 789999999999999999999999998887765554444433 334443 4556667788
Q ss_pred HHccC
Q 006615 252 FVGVE 256 (638)
Q Consensus 252 ~~~~g 256 (638)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 88765
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.77 E-value=3.4e-15 Score=149.04 Aligned_cols=107 Identities=11% Similarity=-0.033 Sum_probs=79.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHH
Q 006615 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPF----STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSL 486 (638)
Q Consensus 411 ~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 486 (638)
.+...+.+.|++++|.+.+++....... +. ..+..+..+|.+.|++++|...++...+. .|+...+|..+
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~ 312 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-----EPDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CcccHHHHHHH
Confidence 3466788889999999999988876543 23 23445677888999999999999988765 34335788899
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCcc-hhhHHHHHHHH
Q 006615 487 LRTLTKCKRDFDAINVLEEMIFSGIVPD-VQTFSGLMYHF 525 (638)
Q Consensus 487 i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~ 525 (638)
...+.+.|++++|.+.|++..+. .|+ ...+..+..+.
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 99999999999999999999875 455 34444444443
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=8.6e-16 Score=151.57 Aligned_cols=285 Identities=11% Similarity=0.002 Sum_probs=159.4
Q ss_pred CchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006615 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214 (638)
Q Consensus 135 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li 214 (638)
.+...+..+...+...|++++|..+|+++.+.+ +.+...+..++..+.+.|++++|..+++++.+... .+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHH
Confidence 344445556666666666666666666666553 33445555566666666666666666666666421 2455666666
Q ss_pred HHHHHcC-CHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChH
Q 006615 215 EHLVNLG-KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293 (638)
Q Consensus 215 ~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~ 293 (638)
..+...| ++++|.+.|++..+.. +.+...|..+...+...|++++|...|+++.+.........+.+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 6666666 6666666666665432 2245556666666666666777766666665544333333334455555556666
Q ss_pred HHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccch
Q 006615 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTT 373 (638)
Q Consensus 294 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (638)
+|...+++....
T Consensus 177 ~A~~~~~~al~~-------------------------------------------------------------------- 188 (330)
T 3hym_B 177 LAERFFSQALSI-------------------------------------------------------------------- 188 (330)
T ss_dssp HHHHHHHHHHTT--------------------------------------------------------------------
T ss_pred HHHHHHHHHHHh--------------------------------------------------------------------
Confidence 555555544211
Q ss_pred HHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--------CCCCHHHHH
Q 006615 374 RLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDG--------MRLPFSTIR 445 (638)
Q Consensus 374 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--------~~~~~~~~~ 445 (638)
. +.+...+..+...+...|++++|...+++..... ...+..++.
T Consensus 189 --------------------------~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (330)
T 3hym_B 189 --------------------------A--PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN 240 (330)
T ss_dssp --------------------------C--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHH
T ss_pred --------------------------C--CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHH
Confidence 0 1234555566666666666666666666655421 012234555
Q ss_pred HHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCc-chhhHHHHHHH
Q 006615 446 LIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP-DVQTFSGLMYH 524 (638)
Q Consensus 446 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~ 524 (638)
.+..+|.+.|++++|...|++..+.. |+....|..+...+.+.|++++|.+.|++..+. .| +...+..+..+
T Consensus 241 ~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 313 (330)
T 3hym_B 241 NLGHVCRKLKKYAEALDYHRQALVLI-----PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHC 313 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhhC-----ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHH
Confidence 55555566666666666665555432 112245566666666666666666666665543 23 34444445444
Q ss_pred H
Q 006615 525 F 525 (638)
Q Consensus 525 ~ 525 (638)
+
T Consensus 314 ~ 314 (330)
T 3hym_B 314 I 314 (330)
T ss_dssp H
T ss_pred H
Confidence 4
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.74 E-value=4e-15 Score=146.76 Aligned_cols=298 Identities=9% Similarity=-0.058 Sum_probs=189.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 006615 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVY 182 (638)
Q Consensus 103 ~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 182 (638)
..+......+...|++++|..+++++.+.. +.+...+..++..+.+.|++++|..+++++.+.. +.+...|..+...+
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYY 100 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH
Confidence 345555666666666666666666665432 2333345555566666666666666666666543 33455666666666
Q ss_pred HhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHH
Q 006615 183 AKTG-KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261 (638)
Q Consensus 183 ~~~g-~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 261 (638)
...| ++++|.+.|++..+... .+...|..+...+...|++++|.+.|++..+.. +.+...+..+...|...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHH
Confidence 6666 66667766666665421 145566666666666777777777666665432 12345555566667777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCcccccccccc
Q 006615 262 KSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLK 341 (638)
Q Consensus 262 ~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (638)
.+.+++..+.........+.+...+...|++++|...+++.......
T Consensus 179 ~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------------------------------- 225 (330)
T 3hym_B 179 ERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA--------------------------------- 225 (330)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT---------------------------------
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh---------------------------------
Confidence 77777766544322223335566666777777777766655211000
Q ss_pred CCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCC
Q 006615 342 PWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGH 421 (638)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 421 (638)
.........+...+..+..++...|+
T Consensus 226 ------------------------------------------------------~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 226 ------------------------------------------------------IGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp ------------------------------------------------------TSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred ------------------------------------------------------ccccccccHHHHHHHHHHHHHHHhcC
Confidence 00011113345678889999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHH-HccCChH
Q 006615 422 VELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTL-TKCKRDF 497 (638)
Q Consensus 422 ~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~ 497 (638)
+++|...+++..+.... +...+..+...|.+.|++++|...|++..+. .|+....+..+..++ ...|+.+
T Consensus 252 ~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 252 YAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGL-----RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT-----CSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHcc-----CCCchHHHHHHHHHHHHHhCchh
Confidence 99999999999877643 6678889999999999999999999998765 344446778887777 4555543
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.73 E-value=2.8e-13 Score=141.51 Aligned_cols=200 Identities=9% Similarity=-0.018 Sum_probs=142.8
Q ss_pred HHHHHHHHHcCCCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHh----cCCHHHH
Q 006615 85 ALSIMEALKSNPNFSHNQSTLHALATVLAK----SQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYST----SGDLELV 156 (638)
Q Consensus 85 Al~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A 156 (638)
++..++.....+ +...+..+...+.. .++++.|...|++..+.| +...+..|...|.. .++.++|
T Consensus 26 ~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 26 NLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 345555444432 34466666666666 788888888888887754 45567777788887 7888888
Q ss_pred HHHHHHHHhcCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 006615 157 LSTWNEYRQRAKLLSTESYNIVMSVYAK----TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN----LGKLDSALE 228 (638)
Q Consensus 157 ~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~ 228 (638)
...|++..+.| +...+..|-..|.. .+++++|.+.|++..+.| +...+..|...|.. .++.++|.+
T Consensus 99 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 99 VIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 88888888765 46777777777877 778888888888888765 56677777777776 778888888
Q ss_pred HHHhcccCCCccCHhHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----cCChHHHHHHHH
Q 006615 229 VFSALPLMRIKRTSKQYLILVEGFVG----VERFDEAKSLLNEMRDDGKFPGRAMRVALERMQE----MGFIQGANEFLR 300 (638)
Q Consensus 229 ~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~----~g~~~~a~~~~~ 300 (638)
.|++..+.| +...+..|...|.. .+++++|.+.|++..+.|. ....+.+...+.. .++.++|..+++
T Consensus 173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGD--ELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 888877654 56777777777777 7888888888888877652 2233344444444 566666766666
Q ss_pred Hh
Q 006615 301 EM 302 (638)
Q Consensus 301 ~~ 302 (638)
..
T Consensus 248 ~a 249 (490)
T 2xm6_A 248 QS 249 (490)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.71 E-value=2.3e-15 Score=151.08 Aligned_cols=99 Identities=10% Similarity=-0.144 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcch------h
Q 006615 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKF------K 478 (638)
Q Consensus 405 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~ 478 (638)
+...|..+...+...|++++|...|+++..... .+...+..+..+|.+.|++++|...|+.+.+..+....| .
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 344566666666666677777666666655432 244555556666666666666666666554432111000 0
Q ss_pred HHHHHHHHHHHHHccCChHHHHHHHH
Q 006615 479 LMLLYSSLLRTLTKCKRDFDAINVLE 504 (638)
Q Consensus 479 ~~~~~~~li~~~~~~g~~~~A~~l~~ 504 (638)
...+|..+..+|.+.|+.++|..+++
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 12456666666666666666665554
No 21
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.71 E-value=4e-13 Score=147.29 Aligned_cols=167 Identities=12% Similarity=-0.009 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHH
Q 006615 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS 484 (638)
Q Consensus 405 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 484 (638)
+...|..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+++... ..+|.
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n----------~~aWk 1254 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANS----------TRTWK 1254 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCC----------HHHHH
Confidence 3334444555555555555555555542 2455555555555555555555554311 13455
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHH-
Q 006615 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY- 563 (638)
Q Consensus 485 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~- 563 (638)
.+-.+|...|++..|....... ..+...+..++..|.+.|.+++|+.+++...... .-....|+-|-..|++.
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCC
Confidence 5555555555555555544321 1233344455555555555555555555444322 22233343444444443
Q ss_pred -----------hhhCCCCC------CHHHHHHHHHHHhccCcHHHHHHHH
Q 006615 564 -----------LSNSNLMP------DAATKELLKKSLWKEGRRKEAAAVE 596 (638)
Q Consensus 564 -----------m~~~g~~p------~~~~~~~li~~~~~~g~~~~A~~~~ 596 (638)
-.+-++.| +...|.-++-.|.+.|+++.|...+
T Consensus 1329 peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1329 PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 01112222 4667999999999999999998543
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.71 E-value=3.7e-16 Score=153.71 Aligned_cols=288 Identities=14% Similarity=0.091 Sum_probs=123.7
Q ss_pred HHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHH
Q 006615 76 LRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLEL 155 (638)
Q Consensus 76 l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 155 (638)
+.+.|++++|.++++.+... .+|..+..++.+.|++++|.+.|.+ .+|..+|..++..+...|++++
T Consensus 13 l~~~~~ld~A~~fae~~~~~-------~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~Ee 79 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERCNEP-------AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHH
Confidence 34668899999999988432 3899999999999999999999954 2567789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc
Q 006615 156 VLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235 (638)
Q Consensus 156 A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~ 235 (638)
|...++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+
T Consensus 80 Ai~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 80 LVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 99977766663 4557889999999999999999988885 377789999999999999999999999977
Q ss_pred CCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHcCChHHHHHHHHHhCcCccccccccc
Q 006615 236 MRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYY 314 (638)
Q Consensus 236 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 314 (638)
..|..|+.++.+.|++++|.+.++++ .+..+ -.++.+|+..|+++.|......+
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------------ 203 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------------ 203 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------------
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------------
Confidence 36999999999999999999999988 24444 48889999999999985433221
Q ss_pred cCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHH
Q 006615 315 EDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFC 394 (638)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 394 (638)
T Consensus 204 -------------------------------------------------------------------------------- 203 (449)
T 1b89_A 204 -------------------------------------------------------------------------------- 203 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcc--cCCHHHHHHHHHhchhccC
Q 006615 395 WVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGI--SKKADAALKAFHDDRTLCG 472 (638)
Q Consensus 395 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~ 472 (638)
..++.....++..|.+.|++++|..+++...... +-....|+-+--+|++ .+++.+.++.|..-....+
T Consensus 204 --------~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 204 --------VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred --------HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence 1122223457788888899999988888877554 3355666666666654 5567777777765322100
Q ss_pred CCcchhHHHHHHHHHHHHHccCChHHHHH
Q 006615 473 PISKFKLMLLYSSLLRTLTKCKRDFDAIN 501 (638)
Q Consensus 473 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 501 (638)
.+........|.-+.-.|.+.++++.|..
T Consensus 275 ~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 275 VLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 00000123568888888888888887776
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.70 E-value=9.8e-16 Score=153.83 Aligned_cols=302 Identities=11% Similarity=-0.012 Sum_probs=190.8
Q ss_pred cCCHHHHHH-HHHHHHhcC---CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 006615 150 SGDLELVLS-TWNEYRQRA---KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225 (638)
Q Consensus 150 ~g~~~~A~~-l~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 225 (638)
.|++++|.. .|++..... ...+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 356666665 555433221 01124456666666666666666766666666642 2255566666666666677777
Q ss_pred HHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcC
Q 006615 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPD 305 (638)
Q Consensus 226 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 305 (638)
|.+.|+++.+.. +.+..+|..+...|...|++++|.+.++++................. ... ..
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------~~~------~~-- 180 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG-------AGG------AG-- 180 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-------------------------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-------hhh------hc--
Confidence 776666665532 23556666677777777777777777777665432221111100000 000 00
Q ss_pred ccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCC
Q 006615 306 KRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKS 385 (638)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (638)
.... ...++..+ ..|+
T Consensus 181 -------------------------------------------------------------~~~~--~~~~~~~~-~~~~ 196 (368)
T 1fch_A 181 -------------------------------------------------------------LGPS--KRILGSLL-SDSL 196 (368)
T ss_dssp --------------------------------------------------------------------CTTHHHH-HHHH
T ss_pred -------------------------------------------------------------ccHH--HHHHHHHh-hccc
Confidence 0000 00011111 2344
Q ss_pred hhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHH
Q 006615 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465 (638)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 465 (638)
+++|.+.|..+.....-.++..++..+...+.+.|++++|...++++...... +..++..+...|.+.|++++|...|+
T Consensus 197 ~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 275 (368)
T 1fch_A 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYR 275 (368)
T ss_dssp HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45555555544433322336788999999999999999999999999876533 67889999999999999999999999
Q ss_pred hchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcc------------hhhHHHHHHHHHccCCHHH
Q 006615 466 DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD------------VQTFSGLMYHFALQGDEKI 533 (638)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~------------~~t~~~li~~~~~~g~~~~ 533 (638)
++.+. .|+...+|..+...|.+.|++++|.+.|+++.+. .|+ ..+|..+..+|...|++++
T Consensus 276 ~al~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 276 RALEL-----QPGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHh-----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 98775 3444578999999999999999999999998774 222 5789999999999999999
Q ss_pred HHHHHHH
Q 006615 534 VQKLFSM 540 (638)
Q Consensus 534 a~~l~~~ 540 (638)
|..++++
T Consensus 349 A~~~~~~ 355 (368)
T 1fch_A 349 YGAADAR 355 (368)
T ss_dssp HHHHHTT
T ss_pred HHHhHHH
Confidence 9988863
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=4.2e-15 Score=149.11 Aligned_cols=266 Identities=9% Similarity=-0.010 Sum_probs=175.3
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006615 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216 (638)
Q Consensus 137 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~ 216 (638)
...+..+...+.+.|++++|...|+++.+.. +.+..+|..+...+.+.|++++|.+.|++..+.. +.+..++..+...
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3446677777778888888888888777664 4457777777777888888888888887777643 1246677777777
Q ss_pred HHHcCCHHHHHHHHHhcccCCCccC-H----------hHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006615 217 LVNLGKLDSALEVFSALPLMRIKRT-S----------KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER 285 (638)
Q Consensus 217 ~~~~g~~~~A~~~~~~m~~~g~~p~-~----------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~ 285 (638)
|...|++++|.+.|+++.+.. |+ . ..+..+...+...|++++|...|+++......
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----------- 209 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD----------- 209 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCS-----------
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcC-----------
Confidence 777777777777777766432 22 1 12223355555566666666666655442211
Q ss_pred HHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhh
Q 006615 286 MQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLA 365 (638)
Q Consensus 286 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (638)
T Consensus 210 -------------------------------------------------------------------------------- 209 (365)
T 4eqf_A 210 -------------------------------------------------------------------------------- 209 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 006615 366 DAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIR 445 (638)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~ 445 (638)
.++...+..+...+...|++++|.+.|++..+.... +..++.
T Consensus 210 -------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 251 (365)
T 4eqf_A 210 -------------------------------------MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWN 251 (365)
T ss_dssp -------------------------------------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred -------------------------------------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 124555666667777777777777777777665432 566777
Q ss_pred HHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC---C--------cc
Q 006615 446 LIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI---V--------PD 514 (638)
Q Consensus 446 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~--------p~ 514 (638)
.+..+|.+.|++++|...|+++.+. .|+...+|..+...|.+.|++++|.+.|+++.+..- . .+
T Consensus 252 ~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 326 (365)
T 4eqf_A 252 RLGATLANGDRSEEAVEAYTRALEI-----QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAIS 326 (365)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc-----CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhH
Confidence 7777777777777777777776654 333346788888888888888888888888766310 0 13
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHH
Q 006615 515 VQTFSGLMYHFALQGDEKIVQKLFSM 540 (638)
Q Consensus 515 ~~t~~~li~~~~~~g~~~~a~~l~~~ 540 (638)
...|..+..++...|+.+.+.++.+.
T Consensus 327 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 327 GNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 67788899999999999888777654
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.69 E-value=7.8e-17 Score=158.51 Aligned_cols=305 Identities=11% Similarity=0.088 Sum_probs=129.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHH
Q 006615 114 KSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE 193 (638)
Q Consensus 114 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 193 (638)
+.|++++|.+.++++.. +.+|..|..++.+.|++++|.+.|.+. +|..+|..++.++...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 44555666666655521 235666666666666666666666432 345566666666666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006615 194 TFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273 (638)
Q Consensus 194 ~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 273 (638)
.++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|++++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 55444442 3345556666666666666666655553 245556666666666666666666666654
Q ss_pred CCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHh
Q 006615 274 FPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTL 353 (638)
Q Consensus 274 ~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (638)
..+..+..++.+.|++++|.+.+
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~------------------------------------------------------ 171 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGA------------------------------------------------------ 171 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHH------------------------------------------------------
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHH------------------------------------------------------
Confidence 12234445555555555555544
Q ss_pred hcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006615 354 DEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLR 433 (638)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 433 (638)
..+ .++.+|..++.+|+..|+++.|......
T Consensus 172 ----------------------------------------~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-- 202 (449)
T 1b89_A 172 ----------------------------------------RKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH-- 202 (449)
T ss_dssp ----------------------------------------HHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTT--
T ss_pred ----------------------------------------HHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHH--
Confidence 443 1788999999999999999999665443
Q ss_pred HcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHcc--CChHHHHHHHHHHHhCCC
Q 006615 434 SDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKC--KRDFDAINVLEEMIFSGI 511 (638)
Q Consensus 434 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~g~ 511 (638)
+..++.-...++..|.+.|++++|..+++..... .+..+..|+-|-.+|++- ++..+.+++|.. +-.+
T Consensus 203 ---L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l-----e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini 272 (449)
T 1b89_A 203 ---IVVHADELEELINYYQDRGYFEELITMLEAALGL-----ERAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNI 272 (449)
T ss_dssp ---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-----TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCH
T ss_pred ---HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC-----cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcC
Confidence 3334445667999999999999999999997654 233357899888888875 455555555542 2233
Q ss_pred Cc------chhhHHHHHHHHHccCCHHHHHHHHHHHHhC-CC-------------CCCHhhHHHHHHHHHHH
Q 006615 512 VP------DVQTFSGLMYHFALQGDEKIVQKLFSMVRQN-GV-------------EPDAYMFKVLIQAYCKY 563 (638)
Q Consensus 512 ~p------~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~-~~-------------~p~~~~~~~li~~~~~~ 563 (638)
+| +...|.-+.-.|.+.++++.|... |.++ .. ..|...|-..|..|...
T Consensus 273 ~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~ 341 (449)
T 1b89_A 273 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF 341 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc
Confidence 33 567899999999999999988763 3332 11 23566677777776643
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.68 E-value=2.7e-12 Score=134.05 Aligned_cols=345 Identities=11% Similarity=0.013 Sum_probs=270.5
Q ss_pred HHHHHHc----CCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCchHhHHHH
Q 006615 72 VTHALRS----APNADSALSIMEALKSNPNFSHNQSTLHALATVLAK----SQRNHELKTLIGDISSSKFLNVSVNFMNL 143 (638)
Q Consensus 72 ~~~~l~~----~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~l~~~~~~~~~~~~~~~~~~l 143 (638)
+...+.. .+++++|+..|+...+.+ +...+..+...+.. .++.++|..+|++..+.| +...+..|
T Consensus 45 lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~L 117 (490)
T 2xm6_A 45 LGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNL 117 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 4455555 789999999999988763 45578888888888 899999999999998865 55667778
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006615 144 MQWYST----SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK----TGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215 (638)
Q Consensus 144 l~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~ 215 (638)
...|.. .+++++|...|++..+.| +..++..|...|.. .++.++|.+.|++..+.| +...+..|..
T Consensus 118 g~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~ 191 (490)
T 2xm6_A 118 GVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGY 191 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 888888 789999999999998876 57788888888887 789999999999999874 6788888888
Q ss_pred HHHH----cCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006615 216 HLVN----LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG----VERFDEAKSLLNEMRDDGKFPGRAMRVALERMQ 287 (638)
Q Consensus 216 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~ 287 (638)
.|.. .++.++|.+.|++..+.| +...+..|...|.. .+++++|...|++..+.|.. ...+.+-..+.
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~y~ 266 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNS--IAQFRLGYILE 266 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCH--HHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHH
Confidence 8888 899999999999988754 56778888888876 88999999999999876532 23334444444
Q ss_pred H----cCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHH
Q 006615 288 E----MGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSL 363 (638)
Q Consensus 288 ~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (638)
. .++.++|..+++..
T Consensus 267 ~g~~~~~d~~~A~~~~~~a------------------------------------------------------------- 285 (490)
T 2xm6_A 267 QGLAGAKEPLKALEWYRKS------------------------------------------------------------- 285 (490)
T ss_dssp HTTTSSCCHHHHHHHHHHH-------------------------------------------------------------
T ss_pred CCCCCCCCHHHHHHHHHHH-------------------------------------------------------------
Confidence 4 55566666555544
Q ss_pred hhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCC
Q 006615 364 LADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH-----GHVELVDRLIAKLRSDGMR 438 (638)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----g~~~~a~~l~~~m~~~g~~ 438 (638)
... + +...+..+-..|... +++++|...|++..+.|
T Consensus 286 ---------------------------------~~~-~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-- 326 (490)
T 2xm6_A 286 ---------------------------------AEQ-G---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-- 326 (490)
T ss_dssp ---------------------------------HTT-T---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--
T ss_pred ---------------------------------HHc-C---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--
Confidence 221 1 445566666677766 88999999999988876
Q ss_pred CCHHHHHHHHHHHcccC---CHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHc----cCChHHHHHHHHHHHhCCC
Q 006615 439 LPFSTIRLIIDFYGISK---KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK----CKRDFDAINVLEEMIFSGI 511 (638)
Q Consensus 439 ~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~ 511 (638)
+...+..+...|...| +.++|...|++..+.. . +..+..+...|.. .++.++|.+.|++..+.|
T Consensus 327 -~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~----~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~- 397 (490)
T 2xm6_A 327 -DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG----E---KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG- 397 (490)
T ss_dssp -CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT----C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred -CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC----C---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-
Confidence 4566667777776655 7889999998876541 1 3578888888888 889999999999998875
Q ss_pred CcchhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCC
Q 006615 512 VPDVQTFSGLMYHFAL----QGDEKIVQKLFSMVRQNG 545 (638)
Q Consensus 512 ~p~~~t~~~li~~~~~----~g~~~~a~~l~~~m~~~~ 545 (638)
+...+..|-..|.. .++.++|.+.|+...+.+
T Consensus 398 --~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 398 --LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 56677778888877 899999999999998865
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.66 E-value=1.9e-15 Score=151.59 Aligned_cols=288 Identities=10% Similarity=-0.019 Sum_probs=210.3
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHH
Q 006615 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250 (638)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 250 (638)
+...|..+...+.+.|++++|.+.|+++.+.. +.+..+|..+...|.+.|++++|.+.|++..+.. +.+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888888999999999999999998853 2367888888888999999999999998887643 235778888888
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCC
Q 006615 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNS 330 (638)
Q Consensus 251 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (638)
.|...|++++|...|+++.+.. |+....
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~-------------------------------------------------- 169 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYL-------------------------------------------------- 169 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------------
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHH--------------------------------------------------
Confidence 8888889888888888876532 110000
Q ss_pred CccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHH
Q 006615 331 GVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410 (638)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 410 (638)
..........+.
T Consensus 170 --------------------------------------------------------------------~~~~~~~~~~~~ 181 (365)
T 4eqf_A 170 --------------------------------------------------------------------VKNKKGSPGLTR 181 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------HhhhccchHHHH
Confidence 000001223345
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHH
Q 006615 411 KMLTILARHGHVELVDRLIAKLRSDGMR-LPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRT 489 (638)
Q Consensus 411 ~li~~~~~~g~~~~a~~l~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 489 (638)
.+...+...|++++|..+++++...... ++..++..+...|...|++++|...|+++.+. .|+...+|..+...
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~ 256 (365)
T 4eqf_A 182 RMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV-----RPEDYSLWNRLGAT 256 (365)
T ss_dssp -------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Confidence 5677888999999999999999887543 26889999999999999999999999998876 34445789999999
Q ss_pred HHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCC
Q 006615 490 LTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNL 569 (638)
Q Consensus 490 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~ 569 (638)
|.+.|++++|++.|+++.+.. +.+..+|..+..+|...|++++|.+.|+++.+.. |+...-.. ....
T Consensus 257 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~----------~~~~ 323 (365)
T 4eqf_A 257 LANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQ--RKSRNQQQ----------VPHP 323 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HCC-------------------
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccCCCcc----------cchh
Confidence 999999999999999998852 2247889999999999999999999999988632 22100000 0000
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 006615 570 MPDAATKELLKKSLWKEGRRKEAAAVEER 598 (638)
Q Consensus 570 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 598 (638)
..+..+|..|..++...|+.+.|.++.++
T Consensus 324 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 324 AISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp ---CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 12467889999999999999999888765
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.66 E-value=2.1e-12 Score=136.30 Aligned_cols=407 Identities=9% Similarity=-0.030 Sum_probs=249.0
Q ss_pred HHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHH-HhcCCHH
Q 006615 76 LRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWY-STSGDLE 154 (638)
Q Consensus 76 l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~-~~~g~~~ 154 (638)
+.+.|++++|..+|+.+.+.. +.+...|...+..+.+.|+++.|..+|++..... |+...|...+... ...|+.+
T Consensus 22 ~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~ 97 (530)
T 2ooe_A 22 EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLP 97 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTST
T ss_pred HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchh
Confidence 355778888888888887642 3355567778888888888888888888877653 5666666666433 3446665
Q ss_pred HHHH----HHHHHHhc-CCC-CCHHhHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--
Q 006615 155 LVLS----TWNEYRQR-AKL-LSTESYNIVMSVYAK---------TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL-- 217 (638)
Q Consensus 155 ~A~~----l~~~m~~~-~~~-p~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~-- 217 (638)
.|.+ +|++.... |.. ++...|...+....+ .|+++.|..+|++..+....+....|.......
T Consensus 98 ~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~ 177 (530)
T 2ooe_A 98 SYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEG 177 (530)
T ss_dssp THHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHh
Confidence 5544 66665443 332 345667766665544 577788888888877621111122332222110
Q ss_pred -----------HHcCCHHHHHHHHHhc------ccCC---CccC--------HhHHHHHHHHHHcc----CCH----HHH
Q 006615 218 -----------VNLGKLDSALEVFSAL------PLMR---IKRT--------SKQYLILVEGFVGV----ERF----DEA 261 (638)
Q Consensus 218 -----------~~~g~~~~A~~~~~~m------~~~g---~~p~--------~~~~~~li~~~~~~----g~~----~~A 261 (638)
.+.++++.|..++.++ .+.. +.|+ ...|...+...... ++. .+|
T Consensus 178 ~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a 257 (530)
T 2ooe_A 178 INIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRV 257 (530)
T ss_dssp HCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHH
T ss_pred hchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHH
Confidence 0123455555555431 1111 1222 23444444322221 122 255
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHH-------cCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccc
Q 006615 262 KSLLNEMRDDGKFPGRAMRVALERMQE-------MGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRI 334 (638)
Q Consensus 262 ~~l~~~m~~~g~~p~~~~~~ll~~~~~-------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (638)
..+|++...........++.....+.+ .|+++.|..+
T Consensus 258 ~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~------------------------------------ 301 (530)
T 2ooe_A 258 MFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF------------------------------------ 301 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH------------------------------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhh------------------------------------
Confidence 556666654322211222233332222 3444300000
Q ss_pred cccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHH
Q 006615 335 AYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLT 414 (638)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 414 (638)
.++|.++|+..... -.+.+...|..++.
T Consensus 302 ---------------------------------------------------~~~A~~~~~~Al~~-~~p~~~~l~~~~~~ 329 (530)
T 2ooe_A 302 ---------------------------------------------------SDEAANIYERAIST-LLKKNMLLYFAYAD 329 (530)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHTTT-TCSSCHHHHHHHHH
T ss_pred ---------------------------------------------------hHHHHHHHHHHHHH-hCcccHHHHHHHHH
Confidence 01445555544321 11235778888999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHH-HHHc
Q 006615 415 ILARHGHVELVDRLIAKLRSDGMRLPF-STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLR-TLTK 492 (638)
Q Consensus 415 ~~~~~g~~~~a~~l~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~-~~~~ 492 (638)
.+.+.|++++|..+|+++.+.... +. ..|...+..+.+.|++++|..+|+...+..+. .+ ..|..... .+..
T Consensus 330 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~--~~---~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 330 YEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART--RH---HVYVTAALMEYYC 403 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC--CT---HHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC--ch---HHHHHHHHHHHHH
Confidence 999999999999999999985422 33 57888888888999999999999998775322 11 22222222 2346
Q ss_pred cCChHHHHHHHHHHHhCCCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCC
Q 006615 493 CKRDFDAINVLEEMIFSGIVP-DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMP 571 (638)
Q Consensus 493 ~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p 571 (638)
.|+.++|..+|++..+. .| +...|..++..+.+.|+.++|..+|++....+ |. .|
T Consensus 404 ~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~--~~--------------------~~ 459 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG--SL--------------------PP 459 (530)
T ss_dssp TCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC--CS--------------------CG
T ss_pred cCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc--CC--------------------CH
Confidence 89999999999998875 35 57789999999999999999999999998753 11 12
Q ss_pred --CHHHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615 572 --DAATKELLKKSLWKEGRRKEAAAVEERCEKIND 604 (638)
Q Consensus 572 --~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 604 (638)
....|...+....+.|+.+.+.++.+++.+.-+
T Consensus 460 ~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 460 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp GGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 245777888888889999999999999988653
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.66 E-value=2.9e-14 Score=137.37 Aligned_cols=148 Identities=11% Similarity=0.073 Sum_probs=93.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCch--HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChH
Q 006615 112 LAKSQRNHELKTLIGDISSSKFLNVS--VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF 189 (638)
Q Consensus 112 ~~~~~~~~~a~~l~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 189 (638)
....|++..|....+..... .|+. .....+.++|...|+++.|...++. .-+|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 34456666666666554432 2322 2334456677777777777665543 12455666677777777777777
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 006615 190 EAVETFRQVIDEGAIPN-SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268 (638)
Q Consensus 190 ~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 268 (638)
+|++.++++...+..|+ ...+..+...+...|++++|.+.+++ ..+...+..+...|.+.|++++|.+.|+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77777777776655453 44444555667777777777777766 245666777777777777777777777777
Q ss_pred HhC
Q 006615 269 RDD 271 (638)
Q Consensus 269 ~~~ 271 (638)
.+.
T Consensus 157 ~~~ 159 (291)
T 3mkr_A 157 QDQ 159 (291)
T ss_dssp HHH
T ss_pred Hhh
Confidence 654
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.65 E-value=3e-14 Score=140.24 Aligned_cols=131 Identities=6% Similarity=-0.003 Sum_probs=99.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHH
Q 006615 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS 484 (638)
Q Consensus 405 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 484 (638)
+...+..+...+...|++++|.+.++++.+.... +..++..+...|...|++++|...|+++.+. .|+...+|.
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~ 244 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDI-----NPGYVRVMY 244 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHH
Confidence 4556667777777778888888888777765432 5667777778888888888888888877664 233346788
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCc-----------chhhHHHHHHHHHccCCHHHHHHHHHHH
Q 006615 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVP-----------DVQTFSGLMYHFALQGDEKIVQKLFSMV 541 (638)
Q Consensus 485 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----------~~~t~~~li~~~~~~g~~~~a~~l~~~m 541 (638)
.+...+.+.|++++|.+.|+++.+..... +..+|..+..++.+.|++++|..++++.
T Consensus 245 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 245 NMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 88889999999999999999887743221 4678888999999999999999988643
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=1.6e-13 Score=142.69 Aligned_cols=366 Identities=10% Similarity=-0.066 Sum_probs=202.3
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-
Q 006615 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQR--------AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE-----G- 202 (638)
Q Consensus 137 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~--------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g- 202 (638)
...||.|...+...|+.++|++.|++..+. ..+....+|+.+..+|...|++++|...|++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 445666777777777777777777654321 11223556777777777777777777777665441 0
Q ss_pred CCC-CHHHHHHHHHHHHHc--CCHHHHHHHHHhcccCCCccC-HhHHHHHHHH---HHccCCHHHHHHHHHHHHhCCCCC
Q 006615 203 AIP-NSRTYTVMIEHLVNL--GKLDSALEVFSALPLMRIKRT-SKQYLILVEG---FVGVERFDEAKSLLNEMRDDGKFP 275 (638)
Q Consensus 203 ~~p-~~~ty~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~---~~~~g~~~~A~~l~~~m~~~g~~p 275 (638)
..+ ...+|..+..++.+. +++++|.+.|++..+. .|+ ...+..+..+ +...++.++|++.+++..+.....
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 111 244555554445443 3577777777776553 343 3344444333 334566677777777665543221
Q ss_pred CHHHHHHHHHHH----HcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHH
Q 006615 276 GRAMRVALERMQ----EMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALAN 351 (638)
Q Consensus 276 ~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (638)
......+...+. ..|+.++|.+.+++.
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~a------------------------------------------------- 239 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEA------------------------------------------------- 239 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHH-------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-------------------------------------------------
Confidence 111122222222 223444555554433
Q ss_pred HhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006615 352 TLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAK 431 (638)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~ 431 (638)
.... +.+...+..+...|...|++++|.+.+++
T Consensus 240 ---------------------------------------------l~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 272 (472)
T 4g1t_A 240 ---------------------------------------------LEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLKK 272 (472)
T ss_dssp ---------------------------------------------HHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---------------------------------------------HHhC--ccHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 1111 22455566677777777777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHcc-------------------cCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHc
Q 006615 432 LRSDGMRLPFSTIRLIIDFYGI-------------------SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK 492 (638)
Q Consensus 432 m~~~g~~~~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 492 (638)
..+.... +..++..+..+|.. .+..+.|...|+...+. .|+...+|..+...|..
T Consensus 273 al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 273 ALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA-----NDNLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHSTT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH-----CTTTCCCHHHHHHHHHH
T ss_pred HHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc-----CCchhhhhhhHHHHHHH
Confidence 7665433 44555555444422 12356777777776654 23333578889999999
Q ss_pred cCChHHHHHHHHHHHhCCCCcchh--hHHHHHH-HHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHh-hhCC
Q 006615 493 CKRDFDAINVLEEMIFSGIVPDVQ--TFSGLMY-HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYL-SNSN 568 (638)
Q Consensus 493 ~g~~~~A~~l~~~m~~~g~~p~~~--t~~~li~-~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m-~~~g 568 (638)
.|++++|++.|++..+....|... .+..+.. .....|+.++|++.|++..+ +.|+.......+..+-+.. +...
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~~~~l~~~~~~~l~ 424 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKMKDKLQKIAKMRLS 424 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998865443321 2222222 34577999999999999887 4566544444443333321 1112
Q ss_pred CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCc
Q 006615 569 LMP-DAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSL 608 (638)
Q Consensus 569 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 608 (638)
..| +..+|..|...|...|++++|.+.+++..+.+...|.
T Consensus 425 ~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 425 KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPS 465 (472)
T ss_dssp HCC-CTTHHHHHHHHHHHHHHCC------------------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 234 5778999999999999999999999999998765443
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.65 E-value=4.9e-14 Score=135.75 Aligned_cols=250 Identities=12% Similarity=0.069 Sum_probs=179.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCC
Q 006615 180 SVYAKTGKNFEAVETFRQVIDEGAIPNS--RTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257 (638)
Q Consensus 180 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 257 (638)
+-....|++..|+..++.... ..|+. .....+.++|...|+++.|...++.. -.|+..++..+...+...|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCc
Confidence 334566888889888877644 33443 35566778899999999988766552 25677888888899999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCcccc
Q 006615 258 FDEAKSLLNEMRDDGKFPGRAMR--VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIA 335 (638)
Q Consensus 258 ~~~A~~l~~~m~~~g~~p~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (638)
.++|++.++++...+..|+.... .+...+...|++++|.+.+++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---------------------------------- 126 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---------------------------------- 126 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----------------------------------
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----------------------------------
Confidence 99999999999887777765442 444667778888887777643
Q ss_pred ccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHH
Q 006615 336 YGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI 415 (638)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 415 (638)
..+...+..+...
T Consensus 127 -------------------------------------------------------------------~~~~~~~~~l~~~ 139 (291)
T 3mkr_A 127 -------------------------------------------------------------------GDSLECMAMTVQI 139 (291)
T ss_dssp -------------------------------------------------------------------CCSHHHHHHHHHH
T ss_pred -------------------------------------------------------------------CCCHHHHHHHHHH
Confidence 1255677788888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHc
Q 006615 416 LARHGHVELVDRLIAKLRSDGMRLPFSTI---RLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK 492 (638)
Q Consensus 416 ~~~~g~~~~a~~l~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 492 (638)
+.+.|++++|.+.++++.+.. |+.... ...+..+...|++++|..+|+++.+.. |+.+..|+.+..++.+
T Consensus 140 ~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-----p~~~~~~~~la~~~~~ 212 (291)
T 3mkr_A 140 LLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-----SPTLLLLNGQAACHMA 212 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-----CCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHH
Confidence 999999999999999988765 332211 223344445678888888888877652 2334678888888888
Q ss_pred cCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHH-HHHHHHHHHhC
Q 006615 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKI-VQKLFSMVRQN 544 (638)
Q Consensus 493 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~-a~~l~~~m~~~ 544 (638)
.|++++|.+.|++..+.. +-+..++..++..+...|+.++ +.++++++.+.
T Consensus 213 ~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 213 QGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 888888888888877642 2256677777777878887765 56777777763
No 33
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.64 E-value=2.5e-12 Score=135.76 Aligned_cols=416 Identities=10% Similarity=0.074 Sum_probs=268.6
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 006615 100 HNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM 179 (638)
Q Consensus 100 ~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li 179 (638)
-+...|..++.. .+.|+++.|..+|+++.+. .+.+...|..++..+.+.|++++|..+|++..... |++..|..++
T Consensus 11 ~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 356678888884 7789999999999999875 35567789999999999999999999999998864 6888888877
Q ss_pred HHH-HhcCChHHHHH----HHHHHHHc-CCCC-CHHHHHHHHHHHHH---------cCCHHHHHHHHHhcccCCCccCHh
Q 006615 180 SVY-AKTGKNFEAVE----TFRQVIDE-GAIP-NSRTYTVMIEHLVN---------LGKLDSALEVFSALPLMRIKRTSK 243 (638)
Q Consensus 180 ~~~-~~~g~~~~A~~----~~~~m~~~-g~~p-~~~ty~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~ 243 (638)
... ...|+.++|.+ +|++.... |..| +...|...+....+ .|+++.|.++|++..+........
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 45677776665 77776653 5554 45677777766554 688999999999988731111123
Q ss_pred HHHHHHHHH-------------HccCCHHHHHHHHHHHH------hCC---CCCCHHHHHHHHHHHHcCChHHHHHHHHH
Q 006615 244 QYLILVEGF-------------VGVERFDEAKSLLNEMR------DDG---KFPGRAMRVALERMQEMGFIQGANEFLRE 301 (638)
Q Consensus 244 ~~~~li~~~-------------~~~g~~~~A~~l~~~m~------~~g---~~p~~~~~~ll~~~~~~g~~~~a~~~~~~ 301 (638)
.|....... .+.++++.|..++.+.. +.. +.|+.. ........++..
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~-----------~~~~~~~~~w~~ 235 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNT-----------PQEAQQVDMWKK 235 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-------------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCC-----------hhHHHHHHHHHH
Confidence 443332211 12344556666555421 111 122210 000000011110
Q ss_pred hCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHh
Q 006615 302 MLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLR 381 (638)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (638)
... ...... .
T Consensus 236 ~~~----------------------------------------------------------~e~~~~------------~ 245 (530)
T 2ooe_A 236 YIQ----------------------------------------------------------WEKSNP------------L 245 (530)
T ss_dssp HHH----------------------------------------------------------HHHHCS------------S
T ss_pred HHH----------------------------------------------------------HHHcCC------------c
Confidence 000 000000 0
Q ss_pred ccCCh----hHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHHcCCCCCHHH
Q 006615 382 HFKSP----ETAWHFFCWVAYQPGYTHDVYALEKMLTILAR-------HGHVE-------LVDRLIAKLRSDGMRLPFST 443 (638)
Q Consensus 382 ~~~~~----~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-------~g~~~-------~a~~l~~~m~~~g~~~~~~~ 443 (638)
..++. ..+...|+...... +.+...|......+.+ .|+++ +|..++++..+.-.+-+...
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~--p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l 323 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL 323 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH
Confidence 00111 23344444443322 2356677777777765 79987 89999999886322336788
Q ss_pred HHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcc-hhhHHHHH
Q 006615 444 IRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD-VQTFSGLM 522 (638)
Q Consensus 444 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li 522 (638)
+..++..+.+.|++++|..+|+.+.+..+. .+ ...|...+..+.+.|+.++|.++|++..+. .|+ ...|....
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~--~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a 397 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAIEDI--DP--TLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAA 397 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSSS--CH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCcccc--Cc--hHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHH
Confidence 999999999999999999999998875221 11 247999999999999999999999999985 233 22332222
Q ss_pred H-HHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 006615 523 Y-HFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEK 601 (638)
Q Consensus 523 ~-~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 601 (638)
. .+...|+.++|..+|+...+.. |+ +...|..++..+.+.|+.++|..+|++..+
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~~--p~----------------------~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKKY--GD----------------------IPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHH--TT----------------------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCChhHHHHHHHHHHHHC--CC----------------------CHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 2 2346899999999999988642 22 467788899999999999999999999998
Q ss_pred ccCCCCcccccceee------eeccccchhcccccccc
Q 006615 602 INDVPSLALRGHIWA------VSSADLTRVHSIYRNSI 633 (638)
Q Consensus 602 ~~~~~~~~~~~~~w~------~~~~~~~~~~~~~~~~~ 633 (638)
.+...|. .....|. ...++.+.+..+++++.
T Consensus 454 ~~~~~~~-~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 454 SGSLPPE-KSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp SCCSCGG-GCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred ccCCCHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7643331 2233552 23456666666665543
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.62 E-value=6.6e-14 Score=137.75 Aligned_cols=24 Identities=8% Similarity=-0.110 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHH
Q 006615 481 LLYSSLLRTLTKCKRDFDAINVLE 504 (638)
Q Consensus 481 ~~~~~li~~~~~~g~~~~A~~l~~ 504 (638)
..|..+...+.+.|+.++|.++++
T Consensus 287 ~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 287 SMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Confidence 445555555555555555555444
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.59 E-value=3.3e-11 Score=132.39 Aligned_cols=405 Identities=10% Similarity=0.108 Sum_probs=280.1
Q ss_pred HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG 151 (638)
Q Consensus 72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g 151 (638)
++.+..+. +..+..+..+..... ....+...+...|.+++|..+|++... .....+.++. ..|
T Consensus 1028 Li~tAIka-D~~Rv~eyI~kLd~~--------d~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~ 1090 (1630)
T 1xi4_A 1028 LILTAIKA-DRTRVMEYINRLDNY--------DAPDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIG 1090 (1630)
T ss_pred HHHHHHHh-ChhhHHHHHHHhhhc--------cHHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHh
Confidence 44444444 445555555544421 134477778889999999999988531 1111233332 778
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006615 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231 (638)
Q Consensus 152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~ 231 (638)
++++|.++.++.. +..+|..+..++.+.|++++|.+.|.+. -|...|.-++..|.+.|++++|.+.+.
T Consensus 1091 nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~ 1158 (1630)
T 1xi4_A 1091 NLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 1158 (1630)
T ss_pred hHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8999999988662 2678889999999999999999999653 377788889999999999999999998
Q ss_pred hcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCChHHHHHHHHHhCcCccccc
Q 006615 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR-AMRVALERMQEMGFIQGANEFLREMLPDKRIKN 310 (638)
Q Consensus 232 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 310 (638)
...+.. ++....+.++.+|++.+++++...+.. .++. .+..+...|...|++++|..+|....
T Consensus 1159 mArk~~--~e~~Idt~LafaYAKl~rleele~fI~-------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~------- 1222 (1630)
T 1xi4_A 1159 MARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------- 1222 (1630)
T ss_pred HHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh-------
Confidence 766543 444445568999999998886444431 2233 33477788899999999999998752
Q ss_pred cccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHH
Q 006615 311 VRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW 390 (638)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 390 (638)
+..-++..+.+.|+++.|.
T Consensus 1223 -------------------------------------------------------------ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A 1223 -------------------------------------------------------------NFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred -------------------------------------------------------------HHHHHHHHHHHhCCHHHHH
Confidence 1233667777789999999
Q ss_pred HHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhc
Q 006615 391 HFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470 (638)
Q Consensus 391 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 470 (638)
+.++.. .+..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++.....
T Consensus 1242 EaarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1242 DGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 999875 3778999999999999999999886653 3346777889999999999999999999876643
Q ss_pred cCCCcchhHHHHHHHHHHHHHcc--CChHHHHHHHHHHHhCCCCc------chhhHHHHHHHHHccCCHHHHHHHH----
Q 006615 471 CGPISKFKLMLLYSSLLRTLTKC--KRDFDAINVLEEMIFSGIVP------DVQTFSGLMYHFALQGDEKIVQKLF---- 538 (638)
Q Consensus 471 ~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~p------~~~t~~~li~~~~~~g~~~~a~~l~---- 538 (638)
.+..+..|+-+...|++. ++..++.++|..-. .++| +...|.-+.--|.+.|+++.|....
T Consensus 1310 -----eraH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~ 1382 (1630)
T 1xi4_A 1310 -----ERAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 1382 (1630)
T ss_pred -----ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhcc
Confidence 355567888888777774 45556666665332 2222 5678999999999999999988422
Q ss_pred ---------HHHHhCCCCCCHhhHHHHHHHHHHH----hh--hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcc
Q 006615 539 ---------SMVRQNGVEPDAYMFKVLIQAYCKY----LS--NSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIN 603 (638)
Q Consensus 539 ---------~~m~~~~~~p~~~~~~~li~~~~~~----m~--~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 603 (638)
++... -..|...|...+..|... +. ...+.|. .-+...+..+.+.|.+.-+...++.....+
T Consensus 1383 ~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~P~~lndLl~~l~~r-lD~~R~V~l~~~~~~l~lik~yl~~vq~~n 1459 (1630)
T 1xi4_A 1383 TDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPR-LDHTRAVNYFSKVKQLPLVKPYLRSVQNHN 1459 (1630)
T ss_pred HhhhhhHHHHHHhc--ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhc-CChHHHHHHHHHcCChHHhHHHHHHHHHhc
Confidence 22221 234677777777777654 00 0111111 112445566666666666666666665544
Q ss_pred C
Q 006615 604 D 604 (638)
Q Consensus 604 ~ 604 (638)
.
T Consensus 1460 ~ 1460 (1630)
T 1xi4_A 1460 N 1460 (1630)
T ss_pred c
Confidence 3
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.51 E-value=2.1e-11 Score=126.73 Aligned_cols=144 Identities=9% Similarity=-0.084 Sum_probs=86.1
Q ss_pred CChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHcccCCHHHH
Q 006615 384 KSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFS--TIRLIID-FYGISKKADAA 460 (638)
Q Consensus 384 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~--~~~~li~-~~~~~g~~~~A 460 (638)
...+.|...|....... +.+...+..+...+...|++++|.+.|++.......+... .+..+.. .+...|+.++|
T Consensus 314 ~~~~~A~~~~~~a~~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 391 (472)
T 4g1t_A 314 ELIGHAVAHLKKADEAN--DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKA 391 (472)
T ss_dssp HHHHHHHHHHHHHHHHC--TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred hhHHHHHHHHHHHhhcC--CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence 34677888888765443 2234567788889999999999999999988766543321 2223322 34577899999
Q ss_pred HHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHH
Q 006615 461 LKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSM 540 (638)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~ 540 (638)
+..|.+..+..+. . ..+.. ....+.++++...+.. +.+..+|+.|-..|...|++++|.+.|++
T Consensus 392 i~~y~kal~i~~~-----~-~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~k 455 (472)
T 4g1t_A 392 IHHFIEGVKINQK-----S-REKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSER 455 (472)
T ss_dssp HHHHHHHHHSCCC-----C-HHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhcCcc-----c-HHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999988765332 1 11111 1233445555555432 34678899999999999999999999999
Q ss_pred HHhCC
Q 006615 541 VRQNG 545 (638)
Q Consensus 541 m~~~~ 545 (638)
..+.|
T Consensus 456 ALe~~ 460 (472)
T 4g1t_A 456 GLESG 460 (472)
T ss_dssp -----
T ss_pred HHhcC
Confidence 88754
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.47 E-value=8e-12 Score=118.04 Aligned_cols=96 Identities=5% Similarity=-0.137 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHH
Q 006615 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSL 486 (638)
Q Consensus 407 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 486 (638)
..+..+...+...|++++|...+++....... +..++..+...|.+.|++++|...|+...+. .|+....|..+
T Consensus 140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~l 213 (258)
T 3uq3_A 140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEK-----DPNFVRAYIRK 213 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CHHHHHHHHHH
Confidence 34555555666666666666666666554322 3445555555555555555555555554443 12223445555
Q ss_pred HHHHHccCChHHHHHHHHHHHh
Q 006615 487 LRTLTKCKRDFDAINVLEEMIF 508 (638)
Q Consensus 487 i~~~~~~g~~~~A~~l~~~m~~ 508 (638)
...+.+.|+.++|.+.|++..+
T Consensus 214 ~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 214 ATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555555544
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.46 E-value=5.5e-12 Score=115.79 Aligned_cols=189 Identities=16% Similarity=0.096 Sum_probs=85.5
Q ss_pred HHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhc--
Q 006615 73 THALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS-- 150 (638)
Q Consensus 73 ~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~-- 150 (638)
...+...|++++|+..|+.+.+.. +.+...+..+..++.+.|++++|...+++..+.. +.+...+..+...+.+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 88 (217)
T 2pl2_A 12 GVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYR 88 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhh
Confidence 344445555555555555555332 2233344455555555555555555555554432 22334444555555555
Q ss_pred ---------CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 006615 151 ---------GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG 221 (638)
Q Consensus 151 ---------g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 221 (638)
|++++|...|++..+.+ +-+...|..+..++...|++++|...|++..+.. .+...+..+...|...|
T Consensus 89 ~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g 165 (217)
T 2pl2_A 89 QAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMG 165 (217)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHT
T ss_pred hhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcC
Confidence 55555555555555443 2234445555555555555555555555555544 34455555555555555
Q ss_pred CHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 006615 222 KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268 (638)
Q Consensus 222 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 268 (638)
++++|.+.|++..+.. +.+...+..+...+.+.|++++|...|++.
T Consensus 166 ~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 166 RLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5555555555544321 113344445555555555555555555443
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.46 E-value=9.4e-12 Score=117.52 Aligned_cols=65 Identities=14% Similarity=-0.066 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhc
Q 006615 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTL 470 (638)
Q Consensus 405 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 470 (638)
+...|..+..++...|++++|...+++..+.... +...+..+..+|.+.|++++|...|+...+.
T Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 172 DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4556666777777777777777777777765432 4667777777777788888887777776554
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.43 E-value=2e-11 Score=112.07 Aligned_cols=197 Identities=14% Similarity=0.014 Sum_probs=158.5
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 006615 100 HNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM 179 (638)
Q Consensus 100 ~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li 179 (638)
++...+..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|...|++..+.+ +.+...|..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 455678888899999999999999999998764 4567778899999999999999999999999876 45678899999
Q ss_pred HHHHhc-----------CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHH
Q 006615 180 SVYAKT-----------GKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLI 247 (638)
Q Consensus 180 ~~~~~~-----------g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 247 (638)
.++.+. |++++|...|++..+. .| +...+..+-..+...|++++|.+.|++..+.. .+...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 999999 9999999999999985 34 57888899999999999999999999998866 68889999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHh
Q 006615 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREM 302 (638)
Q Consensus 248 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~ 302 (638)
+..+|...|++++|...|++..+.........+.+...+...|++++|...+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999998765333334457788899999999999999877
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.40 E-value=5e-11 Score=122.54 Aligned_cols=377 Identities=12% Similarity=0.050 Sum_probs=234.4
Q ss_pred HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCCh---HHHHHHHHHHHhCCCCCchHhHHHHHHHHH
Q 006615 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRN---HELKTLIGDISSSKFLNVSVNFMNLMQWYS 148 (638)
Q Consensus 72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~ 148 (638)
+...+.+.|++++|++.|+...+.+ .++ .+..+...+...|+. ++|..+|++..+. ++..+..|...+.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g--~~~--A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG--YSE--AQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--CCT--GGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC--CHH--HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 5566778899999999999887653 222 444555556667777 8899998887754 4445666666555
Q ss_pred hcC-----CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 006615 149 TSG-----DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF---EAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220 (638)
Q Consensus 149 ~~g-----~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 220 (638)
..| +.++|...|++..+.|. ...+..|...|...+..+ ++.+.+......|. ......|...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcC
Confidence 555 78899999999988773 337777877777765543 45555555555443 44566677777777
Q ss_pred CC----HHHHHHHHHhcccCCCccCHhHHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----
Q 006615 221 GK----LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE---RFDEAKSLLNEMRDDGKFPGRAMRVALERMQEM---- 289 (638)
Q Consensus 221 g~----~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~---- 289 (638)
+. .+++..++..... .+...+..|...|.+.| +.++|++.|++..+.|.......+.+-..|...
T Consensus 155 ~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSS
T ss_pred CCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC
Confidence 74 4445555554442 33447888888888899 899999999999888755444334444444332
Q ss_pred CChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCc
Q 006615 290 GFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKF 369 (638)
Q Consensus 290 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (638)
++.++|..+|
T Consensus 231 ~d~~~A~~~~---------------------------------------------------------------------- 240 (452)
T 3e4b_A 231 PDEKTAQALL---------------------------------------------------------------------- 240 (452)
T ss_dssp CCHHHHHHHH----------------------------------------------------------------------
T ss_pred CCHHHHHHHH----------------------------------------------------------------------
Confidence 3444555544
Q ss_pred ccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 006615 370 VWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTI-L--ARHGHVELVDRLIAKLRSDGMRLPFSTIRL 446 (638)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~--~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~ 446 (638)
+... . -+...+..+-.. + ...+++++|.+.|++..+.| +...+..
T Consensus 241 ------------------------~~aa--~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~ 288 (452)
T 3e4b_A 241 ------------------------EKIA--P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELL 288 (452)
T ss_dssp ------------------------HHHG--G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred ------------------------HHHc--C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 4432 1 134445555554 3 45789999999999998887 6667777
Q ss_pred HHHHHcccC-----CHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCcchhh
Q 006615 447 IIDFYGISK-----KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK----CKRDFDAINVLEEMIFSGIVPDVQT 517 (638)
Q Consensus 447 li~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t 517 (638)
+-..|. .| ++++|...|+... ++.+.++..|...|.. ..+.++|...|++..+.|. ...
T Consensus 289 Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A 356 (452)
T 3e4b_A 289 LGKLYY-EGKWVPADAKAAEAHFEKAV--------GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSA 356 (452)
T ss_dssp HHHHHH-HCSSSCCCHHHHHHHHHTTT--------TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTH
T ss_pred HHHHHH-cCCCCCCCHHHHHHHHHHHh--------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHH
Confidence 777776 44 8999999999865 2224567777777766 4489999999999998773 344
Q ss_pred HHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 006615 518 FSGLMYHFAL----QGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAA 593 (638)
Q Consensus 518 ~~~li~~~~~----~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 593 (638)
...|-..|.. ..+.++|...|+...+.|. ++....-..+......++.++|.
T Consensus 357 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~------------------------~~a~~~l~~l~~~~~~~~~~~a~ 412 (452)
T 3e4b_A 357 DFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT------------------------PEANDLATQLEAPLTPAQRAEGQ 412 (452)
T ss_dssp HHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC------------------------HHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC------------------------HHHHHHHHHHHHhCCHHHHHHHH
Confidence 5555555553 4689999999999998772 22222222333334556778888
Q ss_pred HHHHHHHHccC
Q 006615 594 AVEERCEKIND 604 (638)
Q Consensus 594 ~~~~~~~~~~~ 604 (638)
++.++..+...
T Consensus 413 ~~~~~~~~~~~ 423 (452)
T 3e4b_A 413 RLVQQELAARG 423 (452)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 88888776543
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.40 E-value=6e-11 Score=111.70 Aligned_cols=194 Identities=12% Similarity=0.015 Sum_probs=103.6
Q ss_pred HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG 151 (638)
Q Consensus 72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g 151 (638)
+...+...|++++|+..|+.+.... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...|...|
T Consensus 43 ~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g 119 (252)
T 2ho1_A 43 LGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQK 119 (252)
T ss_dssp HHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHh
Confidence 3445555566666666666555432 2234455555555566666666666665555432 223444555555566666
Q ss_pred CHHHHHHHHHHHHhcCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006615 152 DLELVLSTWNEYRQRAKLL-STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230 (638)
Q Consensus 152 ~~~~A~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~ 230 (638)
++++|...|+++...+..| +...|..+...+.+.|++++|.+.|++..+.. +.+..++..+...|...|++++|.+.+
T Consensus 120 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 198 (252)
T 2ho1_A 120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYY 198 (252)
T ss_dssp CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666555421222 34445555555566666666666666555532 113455555555566666666666666
Q ss_pred HhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615 231 SALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270 (638)
Q Consensus 231 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 270 (638)
++..+.. ..+...+..+...+.+.|++++|.+.++++.+
T Consensus 199 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 199 DLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5554422 22344455555555556666666666655544
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.38 E-value=1.1e-10 Score=109.78 Aligned_cols=201 Identities=10% Similarity=0.050 Sum_probs=169.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 006615 102 QSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181 (638)
Q Consensus 102 ~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 181 (638)
...+..+...+...|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|+++.+.+ +.+...|..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3467778888899999999999999988753 4467788899999999999999999999998875 4468889999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHH
Q 006615 182 YAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260 (638)
Q Consensus 182 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 260 (638)
+...|++++|.+.|+++.+.+..| +...+..+...+.+.|++++|.+.|++..+.. ..+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998844455 56778888999999999999999999987643 2357889999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcC
Q 006615 261 AKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPD 305 (638)
Q Consensus 261 A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 305 (638)
|...++++.+...........+...+...|+.++|.+.++.+...
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999998755433333446778889999999999999987543
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.38 E-value=1.7e-10 Score=109.90 Aligned_cols=90 Identities=9% Similarity=-0.020 Sum_probs=50.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCC---HHHHHHHHHhchhccCCCcch---hHHHHHHHHHHHHHc
Q 006615 419 HGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK---ADAALKAFHDDRTLCGPISKF---KLMLLYSSLLRTLTK 492 (638)
Q Consensus 419 ~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~ 492 (638)
.+++++|.+.|++..+.... +...+..+..++...|+ +++|...+++..+.....+.+ ....+|..+...|.+
T Consensus 155 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 33666666666665554322 34444444455544454 555555555544432211221 123567777777888
Q ss_pred cCChHHHHHHHHHHHhC
Q 006615 493 CKRDFDAINVLEEMIFS 509 (638)
Q Consensus 493 ~g~~~~A~~l~~~m~~~ 509 (638)
.|++++|.+.|++..+.
T Consensus 234 ~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 234 NRDKVKADAAWKNILAL 250 (272)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 88888888888887764
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.38 E-value=2.6e-11 Score=115.79 Aligned_cols=250 Identities=12% Similarity=0.001 Sum_probs=144.9
Q ss_pred hcCCHHHHHHHHHHHHhcCC---CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 006615 149 TSGDLELVLSTWNEYRQRAK---LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225 (638)
Q Consensus 149 ~~g~~~~A~~l~~~m~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 225 (638)
..|++++|...|+++.+... +.+..+|..+...+...|++++|.+.|++..+... .+..+|..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 44667777777777766521 11345566666677777777777777777666421 246666666666777777777
Q ss_pred HHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCcC
Q 006615 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLPD 305 (638)
Q Consensus 226 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 305 (638)
|.+.|++..+.. +.+..+|..+...|.+.|++++|...|+++.+.. |+...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~-------------------------- 146 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPF-------------------------- 146 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH--------------------------
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChH--------------------------
Confidence 777776665532 1245566666666666666666666666665432 22111
Q ss_pred ccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCC
Q 006615 306 KRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKS 385 (638)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (638)
T Consensus 147 -------------------------------------------------------------------------------- 146 (275)
T 1xnf_A 147 -------------------------------------------------------------------------------- 146 (275)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHH
Q 006615 386 PETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFH 465 (638)
Q Consensus 386 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 465 (638)
....+..+...|++++|...+++...... ++...+ .++..+...++.++|...+.
T Consensus 147 -----------------------~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~ 201 (275)
T 1xnf_A 147 -----------------------RSLWLYLAEQKLDEKQAKEVLKQHFEKSD-KEQWGW-NIVEFYLGNISEQTLMERLK 201 (275)
T ss_dssp -----------------------HHHHHHHHHHHHCHHHHHHHHHHHHHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHhcCHHHHHHHHHHHHhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHH
Confidence 11122222344556666666655544322 122222 24555556666667777776
Q ss_pred hchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHH
Q 006615 466 DDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLF 538 (638)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~ 538 (638)
........ ..|+....|..+...|.+.|++++|...|++..+. .|+. +.....++...|++++|++-+
T Consensus 202 ~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 202 ADATDNTS-LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHCCSHHH-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHhccccc-ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 65433111 11222467888888999999999999999998875 3533 333355667778888877665
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.37 E-value=1.4e-11 Score=117.76 Aligned_cols=222 Identities=10% Similarity=0.032 Sum_probs=166.6
Q ss_pred HHcCCChhHHHHHHHHHHcCCCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCH
Q 006615 76 LRSAPNADSALSIMEALKSNPNFSH--NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDL 153 (638)
Q Consensus 76 l~~~~~~~~Al~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 153 (638)
+...|++++|+..|+.+.+.....+ +...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 4456889999999999886522222 35578888888899999999999999988753 34577788899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 006615 154 ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSAL 233 (638)
Q Consensus 154 ~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 233 (638)
++|...|++..+.+ +.+..+|..+...|.+.|++++|.+.|+++.+. .|+.......+..+...|++++|...+++.
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999998864 446788999999999999999999999999884 465555555666667789999999999776
Q ss_pred ccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--C--HHHHHHHHHHHHcCChHHHHHHHHHhC
Q 006615 234 PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP--G--RAMRVALERMQEMGFIQGANEFLREML 303 (638)
Q Consensus 234 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~--~~~~~ll~~~~~~g~~~~a~~~~~~~~ 303 (638)
.... .++...+. ++..+...++.++|...+++........ + ...+.+...+...|++++|...+++..
T Consensus 171 ~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 171 FEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6532 23444444 7777888888889999988875543211 1 122356667777788888888777663
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.37 E-value=1.5e-10 Score=106.70 Aligned_cols=196 Identities=11% Similarity=0.036 Sum_probs=100.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHH
Q 006615 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183 (638)
Q Consensus 104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 183 (638)
.+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...|++..+.. +.+..+|..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 44455555555555555555555554432 2234445555555555566666666655555443 234455555555555
Q ss_pred hc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHH
Q 006615 184 KT-GKNFEAVETFRQVIDEGAIPN-SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261 (638)
Q Consensus 184 ~~-g~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 261 (638)
.. |++++|.+.|+++.+.+..|+ ...+..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHH
Confidence 55 666666666655555222222 3445555555555666666666655554422 12344555555556666666666
Q ss_pred HHHHHHHHhCCCCCCHHH-HHHHHHHHHcCChHHHHHHHHHh
Q 006615 262 KSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREM 302 (638)
Q Consensus 262 ~~l~~~m~~~g~~p~~~~-~~ll~~~~~~g~~~~a~~~~~~~ 302 (638)
...++++.......+... ..+...+...|+.+.+..+++.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 666655544332112222 23334445555666655555554
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.37 E-value=6.6e-11 Score=112.79 Aligned_cols=165 Identities=13% Similarity=0.166 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHhHHHHHHH
Q 006615 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS--TESYNIVMSV 181 (638)
Q Consensus 104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~--~~~~~~li~~ 181 (638)
.+......+...|++++|...+++..+.. +.+...+..+...|.+.|++++|...|++..+.+-.|+ ..+|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34455666677777777777777776643 23344566677777777777777777777766321111 2236677777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHH
Q 006615 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261 (638)
Q Consensus 182 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 261 (638)
+...|++++|.+.|++..+... -+..++..+...|...|++++|.+.|++..+.. +.+...|..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776422 245667777777777777777777777766542 22455555555233334477777
Q ss_pred HHHHHHHHhC
Q 006615 262 KSLLNEMRDD 271 (638)
Q Consensus 262 ~~l~~~m~~~ 271 (638)
.+.|++..+.
T Consensus 162 ~~~~~~a~~~ 171 (272)
T 3u4t_A 162 DSSFVKVLEL 171 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777776654
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.36 E-value=3.3e-10 Score=104.31 Aligned_cols=165 Identities=13% Similarity=0.024 Sum_probs=107.1
Q ss_pred chHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006615 136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215 (638)
Q Consensus 136 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~ 215 (638)
+...+..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|.+.|++..+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 44556677777778888888888888777654 3456677777777778888888888887777642 225666777777
Q ss_pred HHHHc-CCHHHHHHHHHhcccCCCccC-HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChH
Q 006615 216 HLVNL-GKLDSALEVFSALPLMRIKRT-SKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQ 293 (638)
Q Consensus 216 ~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~ 293 (638)
.+... |++++|.+.++++.+.+..|+ ...|..+...+...|++++|...++++.+.........+.+...+...|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 77777 777777777777665222232 4566667777777777777777777765543221122234445555555555
Q ss_pred HHHHHHHHh
Q 006615 294 GANEFLREM 302 (638)
Q Consensus 294 ~a~~~~~~~ 302 (638)
+|...++..
T Consensus 165 ~A~~~~~~~ 173 (225)
T 2vq2_A 165 DADYYFKKY 173 (225)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.35 E-value=1.2e-09 Score=104.10 Aligned_cols=157 Identities=12% Similarity=0.098 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHhHHHH
Q 006615 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYST----SGDLELVLSTWNEYRQRAKLLSTESYNIV 178 (638)
Q Consensus 103 ~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 178 (638)
..+..+...+...+++++|...|++..+. .+...+..+...|.. .+++++|...|++..+.+ +..++..+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 34555555555666666666666665552 233445555566666 666666666666666554 45566666
Q ss_pred HHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhcccCCCccCHhHHHHHHH
Q 006615 179 MSVYAK----TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN----LGKLDSALEVFSALPLMRIKRTSKQYLILVE 250 (638)
Q Consensus 179 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 250 (638)
...|.. .+++++|.+.|++..+.+ +..++..+-..|.. .+++++|.+.|++..+.+ +...+..+..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 666666 666666666666666543 45556666666666 666666666666655543 3445555555
Q ss_pred HHHc----cCCHHHHHHHHHHHHhC
Q 006615 251 GFVG----VERFDEAKSLLNEMRDD 271 (638)
Q Consensus 251 ~~~~----~g~~~~A~~l~~~m~~~ 271 (638)
.|.. .+++++|...|++..+.
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~ 179 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL 179 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 5555 56666666666666554
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.35 E-value=6.3e-11 Score=110.71 Aligned_cols=199 Identities=10% Similarity=0.048 Sum_probs=155.9
Q ss_pred CHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHH
Q 006615 68 DPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWY 147 (638)
Q Consensus 68 ~~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~ 147 (638)
.+..+...+...|++++|+..|+.+.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...|
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp -----------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 34445667788899999999999998653 3456788888999999999999999999988753 34667788899999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006615 148 STSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227 (638)
Q Consensus 148 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 227 (638)
...|++++|...|+++.+.+ +.+...|..+...+.+.|++++|.+.+++..+.. +.+...+..+...+.+.|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998875 4568889999999999999999999999998853 236788889999999999999999
Q ss_pred HHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615 228 EVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272 (638)
Q Consensus 228 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 272 (638)
+.|++..+.. ..+..+|..+...|.+.|++++|.+.++++.+..
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999887643 2357789999999999999999999999997754
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.35 E-value=1.2e-09 Score=104.12 Aligned_cols=215 Identities=13% Similarity=0.039 Sum_probs=185.4
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCchHhHHHHHHH
Q 006615 71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAK----SQRNHELKTLIGDISSSKFLNVSVNFMNLMQW 146 (638)
Q Consensus 71 ~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~ 146 (638)
.+...+...|++++|+..|+...+. -+...+..+...+.. .+++++|...|++..+.+ +...+..+...
T Consensus 11 ~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 83 (273)
T 1ouv_A 11 GLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNL 83 (273)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 3566788899999999999999873 234578888888888 999999999999998875 66778889999
Q ss_pred HHh----cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006615 147 YST----SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK----TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218 (638)
Q Consensus 147 ~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~ 218 (638)
|.. .+++++|...|++..+.+ +..++..+...|.. .+++++|.+.|++..+.+ +...+..+...|.
T Consensus 84 ~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 84 YYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYD 157 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHH
Confidence 999 999999999999999876 68899999999999 999999999999999875 6677888888888
Q ss_pred H----cCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--
Q 006615 219 N----LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVG----VERFDEAKSLLNEMRDDGKFPGRAMRVALERMQE-- 288 (638)
Q Consensus 219 ~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~-- 288 (638)
. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+.+. ....+.+-..+..
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 8 999999999999988754 56778888899999 9999999999999988753 3445577777888
Q ss_pred --cCChHHHHHHHHHhC
Q 006615 289 --MGFIQGANEFLREML 303 (638)
Q Consensus 289 --~g~~~~a~~~~~~~~ 303 (638)
.+++++|...++...
T Consensus 233 ~~~~~~~~A~~~~~~a~ 249 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGC 249 (273)
T ss_dssp SSSCCSTTHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHH
Confidence 899999999999874
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.34 E-value=1.9e-10 Score=114.48 Aligned_cols=248 Identities=11% Similarity=0.049 Sum_probs=148.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006615 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK-NFEAVETFRQVIDEGAIPNSRTYTVMIEH 216 (638)
Q Consensus 138 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~ty~~li~~ 216 (638)
..|..+...+.+.|++++|+..|++....+ +-+..+|+.+..++.+.|+ +++|+..|++..+.... +...|+.+...
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 345555566666666677777766666654 3345666666666666665 77777777666664322 55666666666
Q ss_pred HHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-cCChHHH
Q 006615 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQE-MGFIQGA 295 (638)
Q Consensus 217 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~-~g~~~~a 295 (638)
+.+.|++++|...|+++.+.. .-+...|..+..++.+.|++++|+..|+++.+........++.+...+.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHH
Confidence 666677777777666666532 22556666666666677777777777777666544433344455555555 3443444
Q ss_pred H-----HHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcc
Q 006615 296 N-----EFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFV 370 (638)
Q Consensus 296 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (638)
. ..++....
T Consensus 255 ~~~~el~~~~~Al~------------------------------------------------------------------ 268 (382)
T 2h6f_A 255 VLEREVQYTLEMIK------------------------------------------------------------------ 268 (382)
T ss_dssp HHHHHHHHHHHHHH------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHH------------------------------------------------------------------
Confidence 2 33333210
Q ss_pred cchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006615 371 WTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHG--HVELVDRLIAKLRSDGMRLPFSTIRLII 448 (638)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~l~~~m~~~g~~~~~~~~~~li 448 (638)
.. +-+...|+.+...+...| ++++|.+.+.++ +. ...+...+..+.
T Consensus 269 ----------------------------l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La 316 (382)
T 2h6f_A 269 ----------------------------LV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLV 316 (382)
T ss_dssp ----------------------------HS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHH
T ss_pred ----------------------------HC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHH
Confidence 00 124556777777777777 578888888877 32 233567777777
Q ss_pred HHHcccC---------CHHHHHHHHHhc-hhccCCCcchhHHHHHHHHHHHHH
Q 006615 449 DFYGISK---------KADAALKAFHDD-RTLCGPISKFKLMLLYSSLLRTLT 491 (638)
Q Consensus 449 ~~~~~~g---------~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~~ 491 (638)
..|.+.| ..++|..+|+++ .+. +|.....|..+...+.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~-----DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 317 DIYEDMLENQCDNKEDILNKALELCEILAKEK-----DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT-----CGGGHHHHHHHHHHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHHh-----CchhHHHHHHHHHHHH
Confidence 8777753 257888888887 443 4444456666655443
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.34 E-value=2.1e-10 Score=114.25 Aligned_cols=128 Identities=11% Similarity=0.100 Sum_probs=91.7
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCC-HHHHHHHHHhcccCCCccCHhHHHHHH
Q 006615 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGK-LDSALEVFSALPLMRIKRTSKQYLILV 249 (638)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li 249 (638)
...|+.+...+.+.|++++|++.|++..+. .| +...|+.+...+.+.|+ +++|.+.|++..+.. .-+...|+.+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 456777888888899999999999999885 34 57788888888889996 999999998887643 23677888888
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHh
Q 006615 250 EGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREM 302 (638)
Q Consensus 250 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~ 302 (638)
.++...|++++|+..|+++..........++.+...+...|++++|...+++.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~a 226 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQL 226 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 88888899999999888887644332222334444444444444444444433
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.32 E-value=8.7e-11 Score=109.77 Aligned_cols=200 Identities=14% Similarity=0.093 Sum_probs=153.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 006615 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS 180 (638)
Q Consensus 101 ~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~ 180 (638)
....|..+...+...|++++|...+++..+.. +.+...+..+...|.+.|++++|...|++..+.. +.+..+|..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 44467778888889999999999999998753 4567788889999999999999999999998875 456888999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHH
Q 006615 181 VYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260 (638)
Q Consensus 181 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 260 (638)
.+...|++++|.+.|++..+.. +.+...+..+...+.+.|++++|.+.++++.+.. ..+...+..+...+.+.|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998864 2367889999999999999999999999987643 3467889999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCc
Q 006615 261 AKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLP 304 (638)
Q Consensus 261 A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 304 (638)
|...|+++.+.........+.+...+...|++++|...+++...
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 99999999876533223345778899999999999999998753
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.28 E-value=1.3e-10 Score=117.79 Aligned_cols=198 Identities=14% Similarity=0.054 Sum_probs=110.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc----hHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC-CCHHh
Q 006615 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNV----SVNFMNLMQWYSTSGDLELVLSTWNEYRQR----AKL-LSTES 174 (638)
Q Consensus 104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~----~~~-p~~~~ 174 (638)
.+......+...|++++|...+++..+... .+ ...+..+...|...|++++|...|++.... +-. ....+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 444555556666677777776666655421 12 234556666677777777777776665332 111 12345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHHHHH
Q 006615 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGA-IPN----SRTYTVMIEHLVNLGK--------------------LDSALEV 229 (638)
Q Consensus 175 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~ty~~li~~~~~~g~--------------------~~~A~~~ 229 (638)
|..+...+...|++++|...+++..+... .++ ..++..+...|...|+ +++|.+.
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 66666667777777777777766654210 011 3356666666677777 6777666
Q ss_pred HHhccc----CCCcc-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCH-----HHHHHHHHHHHcCChHHHHHH
Q 006615 230 FSALPL----MRIKR-TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK-FPGR-----AMRVALERMQEMGFIQGANEF 298 (638)
Q Consensus 230 ~~~m~~----~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~-----~~~~ll~~~~~~g~~~~a~~~ 298 (638)
+++..+ .+-.| ...+|..+...|...|++++|...+++...... .++. ....+...+...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 665432 11111 234566677777777777777777776643211 1111 112444555666666666666
Q ss_pred HHHh
Q 006615 299 LREM 302 (638)
Q Consensus 299 ~~~~ 302 (638)
+++.
T Consensus 250 ~~~a 253 (406)
T 3sf4_A 250 YKKT 253 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.27 E-value=2.8e-10 Score=115.74 Aligned_cols=161 Identities=13% Similarity=0.050 Sum_probs=87.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHH
Q 006615 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLST----ESYNIVMSVYAKTGKNFEAVETFRQVIDE----GAIP-NSRTYT 211 (638)
Q Consensus 141 ~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~ty~ 211 (638)
..+...+...|++++|...|++..+.+ +.+. .+|..+...|...|++++|.+.|++..+. +-.| ...++.
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 344555666666666666666666553 1122 35666666666667777766666665442 1111 234555
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccC----CC-ccCHhHHHHHHHHHHccCC-----------------HHHHHHHHHHHH
Q 006615 212 VMIEHLVNLGKLDSALEVFSALPLM----RI-KRTSKQYLILVEGFVGVER-----------------FDEAKSLLNEMR 269 (638)
Q Consensus 212 ~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~m~ 269 (638)
.+...|...|++++|.+.|++..+. +- .....++..+...|...|+ +++|.+.+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 6666666677777776666655432 10 1123466677777777777 777777666553
Q ss_pred hC----CCCCCH--HHHHHHHHHHHcCChHHHHHHHHHh
Q 006615 270 DD----GKFPGR--AMRVALERMQEMGFIQGANEFLREM 302 (638)
Q Consensus 270 ~~----g~~p~~--~~~~ll~~~~~~g~~~~a~~~~~~~ 302 (638)
.. +-.+.. ....+...+...|++++|...+++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 249 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQER 249 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 21 111111 1123444555556666665555543
No 58
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.27 E-value=8e-10 Score=111.24 Aligned_cols=238 Identities=8% Similarity=-0.069 Sum_probs=165.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccC----CCcc-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-----CCCH--HHH
Q 006615 213 MIEHLVNLGKLDSALEVFSALPLM----RIKR-TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK-----FPGR--AMR 280 (638)
Q Consensus 213 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----~p~~--~~~ 280 (638)
....+...|++++|.+.|++..+. +-.+ ...+|..+...|...|++++|...+++..+.-. .+.. ...
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444567788888888888877652 1111 345778888888889999999988887754211 1111 122
Q ss_pred HHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHH
Q 006615 281 VALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEV 360 (638)
Q Consensus 281 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (638)
.+...|...|++++|...+++....
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~------------------------------------------------------- 213 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSM------------------------------------------------------- 213 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-------------------------------------------------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH-------------------------------------------------------
Confidence 5557778888888888887765210
Q ss_pred HHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----C
Q 006615 361 VSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD----G 436 (638)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g 436 (638)
... .........++..+..+|...|++++|.+.+++..+. +
T Consensus 214 --------------------------------~~~---~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 214 --------------------------------AEA---EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp --------------------------------HHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred --------------------------------HHH---cCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 000 0000112346777888999999999999999987762 3
Q ss_pred C-CCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCC---hHHHHHHHHHHHhCCCC
Q 006615 437 M-RLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR---DFDAINVLEEMIFSGIV 512 (638)
Q Consensus 437 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~ 512 (638)
. .....++..+...|.+.|++++|...+++..+.......|.....+..+...+...|+ .++|+.++++. +..
T Consensus 259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~ 335 (383)
T 3ulq_A 259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLY 335 (383)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCH
T ss_pred cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCH
Confidence 3 3345778888899999999999999999877654333344444556778888889998 77777777765 334
Q ss_pred cc-hhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615 513 PD-VQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543 (638)
Q Consensus 513 p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~ 543 (638)
|+ ...+..+...|...|++++|.+.+++..+
T Consensus 336 ~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 336 ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44 44677788899999999999999998774
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.27 E-value=1.6e-10 Score=117.28 Aligned_cols=138 Identities=9% Similarity=-0.108 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHcccCCHHHHHHHHHhchhccCCC-cchhH
Q 006615 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGM-RLP----FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI-SKFKL 479 (638)
Q Consensus 406 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 479 (638)
...+..+...+...|++++|...+++...... .++ ..++..+...|...|++++|...+++..+..... ..+..
T Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 266 (406)
T 3sf4_A 187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 266 (406)
T ss_dssp HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHH
Confidence 34677788889999999999999988764311 112 2477788889999999999999999876542221 12222
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhC----CCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFS----GIVP-DVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543 (638)
Q Consensus 480 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~ 543 (638)
..++..+...|.+.|++++|.+.+++..+. +-.+ ...++..+...|...|++++|.+.+++..+
T Consensus 267 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 468889999999999999999999988663 1111 155788888999999999999999998775
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.26 E-value=1.4e-10 Score=117.93 Aligned_cols=282 Identities=14% Similarity=-0.006 Sum_probs=201.3
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHhcccC----CC-ccCH
Q 006615 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNS----RTYTVMIEHLVNLGKLDSALEVFSALPLM----RI-KRTS 242 (638)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~ 242 (638)
...+..+...+...|++++|.+.|++..+.+.. +. ..|..+...|...|++++|.+.|++..+. +- ....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 344556667889999999999999999986322 32 47888889999999999999999887542 11 2245
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCCH--HHHHHHHHHHHcCC-----------------hHHHHHHH
Q 006615 243 KQYLILVEGFVGVERFDEAKSLLNEMRDD----GKFPGR--AMRVALERMQEMGF-----------------IQGANEFL 299 (638)
Q Consensus 243 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~--~~~~ll~~~~~~g~-----------------~~~a~~~~ 299 (638)
.++..+...|...|++++|...+++.... +-.|.. ....+...+...|+ +++|.+.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 67888999999999999999999987543 212222 12355677778888 66666666
Q ss_pred HHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHH
Q 006615 300 REMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKV 379 (638)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (638)
++..
T Consensus 207 ~~al---------------------------------------------------------------------------- 210 (411)
T 4a1s_A 207 QENL---------------------------------------------------------------------------- 210 (411)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 5431
Q ss_pred HhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHccc
Q 006615 380 LRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR-LP----FSTIRLIIDFYGIS 454 (638)
Q Consensus 380 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-~~----~~~~~~li~~~~~~ 454 (638)
++.... .........+..+...+...|++++|...+++..+.... .+ ..++..+...|...
T Consensus 211 -----------~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 276 (411)
T 4a1s_A 211 -----------KLMRDL---GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFL 276 (411)
T ss_dssp -----------HHHHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT
T ss_pred -----------HHHHHc---CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHC
Confidence 111111 000112346777888899999999999999887643211 12 23677888899999
Q ss_pred CCHHHHHHHHHhchhccCCC-cchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhC----CCCc-chhhHHHHHHHHHcc
Q 006615 455 KKADAALKAFHDDRTLCGPI-SKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS----GIVP-DVQTFSGLMYHFALQ 528 (638)
Q Consensus 455 g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~ 528 (638)
|++++|...+++........ ..+....++..+...|...|++++|.+.+++..+. +-.+ ...++..+...|...
T Consensus 277 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 356 (411)
T 4a1s_A 277 GQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAI 356 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Confidence 99999999999876543211 11222467888999999999999999999988663 1111 244788888999999
Q ss_pred CCHHHHHHHHHHHHhC
Q 006615 529 GDEKIVQKLFSMVRQN 544 (638)
Q Consensus 529 g~~~~a~~l~~~m~~~ 544 (638)
|++++|.+.+++..+.
T Consensus 357 g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 357 GGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH
Confidence 9999999999988764
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.24 E-value=1.9e-10 Score=113.02 Aligned_cols=139 Identities=10% Similarity=-0.085 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCC-cchhH
Q 006615 406 VYALEKMLTILARHGHVELVDRLIAKLRSD----GMRL-PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI-SKFKL 479 (638)
Q Consensus 406 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 479 (638)
...+..+...+...|++++|.+.+++..+. +..+ ...++..+...|...|++++|...+++..+..... ..+..
T Consensus 183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 262 (338)
T 3ro2_A 183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 262 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHH
Confidence 345777788888999999999998887643 1111 12367778888999999999999998876542221 12222
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhC----CCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFS----GIVP-DVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544 (638)
Q Consensus 480 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 544 (638)
..++..+...+...|++++|.+.+++..+. +-.+ ...++..+...|...|++++|.+.+++..+.
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 263 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 467888999999999999999999988653 1111 1447788889999999999999999998864
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.23 E-value=1e-09 Score=107.82 Aligned_cols=279 Identities=12% Similarity=0.010 Sum_probs=182.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHH
Q 006615 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS----TESYNIVMSVYAKTGKNFEAVETFRQVIDE----GAIP-NSRTY 210 (638)
Q Consensus 140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~ty 210 (638)
+......+...|++++|...|++..+.+ +.+ ...|..+...+...|++++|.+.+++..+. +-.| ...++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3344566677777777777777776653 222 355667777777777777777777765442 1111 24556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccCCC-ccC----HhHHHHHHHHHHccCC--------------------HHHHHHHH
Q 006615 211 TVMIEHLVNLGKLDSALEVFSALPLMRI-KRT----SKQYLILVEGFVGVER--------------------FDEAKSLL 265 (638)
Q Consensus 211 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~A~~l~ 265 (638)
..+...|...|++++|.+.+++..+..- .++ ..++..+...+...|+ +++|.+.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 6677777778888888877776543110 011 3467777788888888 88888888
Q ss_pred HHHHhC----CCCCCHH--HHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCcccccccc
Q 006615 266 NEMRDD----GKFPGRA--MRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQ 339 (638)
Q Consensus 266 ~~m~~~----g~~p~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (638)
++.... +..+... ...+...+...|++++|...+++....
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---------------------------------- 212 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI---------------------------------- 212 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------------------------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH----------------------------------
Confidence 776432 2112111 225566778888888888888765210
Q ss_pred ccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhc
Q 006615 340 LKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARH 419 (638)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 419 (638)
.... .........+..+...+...
T Consensus 213 -----------------------------------------------------~~~~---~~~~~~~~~~~~l~~~~~~~ 236 (338)
T 3ro2_A 213 -----------------------------------------------------AKEF---GDKAAERRAYSNLGNAYIFL 236 (338)
T ss_dssp -----------------------------------------------------HHHH---TCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------HHhc---CChHHHHHHHHHHHHHHHHc
Confidence 0000 00011234677788889999
Q ss_pred CChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCc-chhHHHHHHHHHHHHHcc
Q 006615 420 GHVELVDRLIAKLRSDGMR-LP----FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS-KFKLMLLYSSLLRTLTKC 493 (638)
Q Consensus 420 g~~~~a~~l~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~ 493 (638)
|++++|.+.+++....... .+ ..++..+...|...|++++|...+++..+...... .+....++..+...|.+.
T Consensus 237 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 316 (338)
T 3ro2_A 237 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 316 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 9999999999887643111 11 45677788899999999999999998765422111 222245788899999999
Q ss_pred CChHHHHHHHHHHHhC
Q 006615 494 KRDFDAINVLEEMIFS 509 (638)
Q Consensus 494 g~~~~A~~l~~~m~~~ 509 (638)
|++++|.+.+++..+.
T Consensus 317 g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 317 GNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TCHHHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHHHH
Confidence 9999999999998874
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.20 E-value=1.2e-08 Score=99.08 Aligned_cols=85 Identities=16% Similarity=0.142 Sum_probs=51.4
Q ss_pred cCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCC-CCcc--hhhHHHHHHHHHccCC
Q 006615 454 SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSG-IVPD--VQTFSGLMYHFALQGD 530 (638)
Q Consensus 454 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~--~~t~~~li~~~~~~g~ 530 (638)
.|++++|..+|+...+. .|+....|..++..+.+.|+.++|..+|++..... +.|+ ...|..++....+.|+
T Consensus 182 ~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~ 256 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKK-----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 256 (308)
T ss_dssp SCCHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 45555555555555443 22223566666666667777777777777776642 3442 4456666666666777
Q ss_pred HHHHHHHHHHHHh
Q 006615 531 EKIVQKLFSMVRQ 543 (638)
Q Consensus 531 ~~~a~~l~~~m~~ 543 (638)
.++|..+++++.+
T Consensus 257 ~~~a~~~~~~a~~ 269 (308)
T 2ond_A 257 LASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766665
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.19 E-value=7.9e-10 Score=114.33 Aligned_cols=216 Identities=11% Similarity=0.073 Sum_probs=178.9
Q ss_pred ChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHH
Q 006615 81 NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRN-HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLST 159 (638)
Q Consensus 81 ~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l 159 (638)
.+++++..++...... ..+...+..+...+...|++ ++|...|++..+.. +.+...|..+...|.+.|++++|...
T Consensus 83 ~~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3677888888777543 34666888888999999999 99999999988753 34577899999999999999999999
Q ss_pred HHHHHhcCCCCCHHhHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--------CC
Q 006615 160 WNEYRQRAKLLSTESYNIVMSVYAKT---------GKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL--------GK 222 (638)
Q Consensus 160 ~~~m~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~--------g~ 222 (638)
|++..+.+ |+..+|..+...+... |++++|.+.|++..+... -+...|..+...|... |+
T Consensus 160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccch
Confidence 99999865 7788899999999999 999999999999998632 2688899999999998 99
Q ss_pred HHHHHHHHHhcccCCCc--cCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHH
Q 006615 223 LDSALEVFSALPLMRIK--RTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLR 300 (638)
Q Consensus 223 ~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~ 300 (638)
+++|.+.|++..+..-. -+...|..+..+|...|++++|.+.|++..+...........+...+...|++++|.+.+.
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999998874210 3788899999999999999999999999987654333344577778888888888887665
Q ss_pred Hh
Q 006615 301 EM 302 (638)
Q Consensus 301 ~~ 302 (638)
.+
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 54
No 65
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.19 E-value=2e-10 Score=111.74 Aligned_cols=134 Identities=15% Similarity=0.127 Sum_probs=80.2
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc------CC
Q 006615 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQR-------AKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE------GA 203 (638)
Q Consensus 137 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~-------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 203 (638)
..++..+...|...|++++|..+|+++.+. +.+....++..+...|...|++++|.+.|++..+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 445666677777777777777777776652 22233455666777777777777777777766543 11
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccC------CCcc-CHhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615 204 IP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLM------RIKR-TSKQYLILVEGFVGVERFDEAKSLLNEMRD 270 (638)
Q Consensus 204 ~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 270 (638)
.| ...++..+...|...|++++|.+.|++..+. +-.| ...++..+...+...|++++|.+.|+++..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12 2445555666666666666666666655432 1112 234556666666666777777666666543
No 66
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.19 E-value=6.1e-09 Score=106.90 Aligned_cols=343 Identities=10% Similarity=0.038 Sum_probs=199.0
Q ss_pred HHHHcCCCh---hHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcC-----ChHHHHHHHHHHHhCCCCCchHhHHHHHH
Q 006615 74 HALRSAPNA---DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQ-----RNHELKTLIGDISSSKFLNVSVNFMNLMQ 145 (638)
Q Consensus 74 ~~l~~~~~~---~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~l~~~~~~~~~~~~~~~~~~ll~ 145 (638)
..+...|.+ ++|+..|+..... ++..+..+...+...+ +.++|...|++..+.|... .+..|..
T Consensus 43 ~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~ 114 (452)
T 3e4b_A 43 DIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAM 114 (452)
T ss_dssp ---------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHH
T ss_pred HHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHH
Confidence 344456666 8999999988743 3335666666455544 7889999999988866432 5677888
Q ss_pred HHHhcCCHH---HHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-
Q 006615 146 WYSTSGDLE---LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG- 221 (638)
Q Consensus 146 ~~~~~g~~~---~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g- 221 (638)
.|...+..+ .+.+.+......| +...+..|...|...+.++++........+.-...+...+..|...|.+.|
T Consensus 115 ~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~ 191 (452)
T 3e4b_A 115 LYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQ 191 (452)
T ss_dssp HHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTC
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 887776544 3455555555555 356777788888888866555555444433222234448888888999999
Q ss_pred --CHHHHHHHHHhcccCCCccCHhHHHHHHHHHHcc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-H--HHcCCh
Q 006615 222 --KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV----ERFDEAKSLLNEMRDDGKFPGRAMRVALER-M--QEMGFI 292 (638)
Q Consensus 222 --~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~-~--~~~g~~ 292 (638)
+.++|.+.|++..+.| .++...+..|...|... +++++|.+.|++.. .|.. ...+.+-.. + ...++.
T Consensus 192 ~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~--~a~~~Lg~~~~~~~~~~d~ 267 (452)
T 3e4b_A 192 PEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYP--ASWVSLAQLLYDFPELGDV 267 (452)
T ss_dssp HHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGST--HHHHHHHHHHHHSGGGCCH
T ss_pred cccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCH--HHHHHHHHHHHhCCCCCCH
Confidence 9999999999998877 45666667777777665 79999999999987 3221 223333333 2 346677
Q ss_pred HHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccc
Q 006615 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWT 372 (638)
Q Consensus 293 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (638)
++|..+|++...
T Consensus 268 ~~A~~~~~~Aa~-------------------------------------------------------------------- 279 (452)
T 3e4b_A 268 EQMMKYLDNGRA-------------------------------------------------------------------- 279 (452)
T ss_dssp HHHHHHHHHHHH--------------------------------------------------------------------
T ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Confidence 777776665421
Q ss_pred hHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006615 373 TRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHG-----HVELVDRLIAKLRSDGMRLPFSTIRLI 447 (638)
Q Consensus 373 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~a~~l~~~m~~~g~~~~~~~~~~l 447 (638)
.| +...+..+-..|. .| ++++|.+.|++.. .| +......|
T Consensus 280 ---------------------------~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~L 324 (452)
T 3e4b_A 280 ---------------------------AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYL 324 (452)
T ss_dssp ---------------------------TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHH
T ss_pred ---------------------------CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHH
Confidence 11 3444445555554 33 6777777777666 33 45555555
Q ss_pred HHHHcc----cCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCcchhhHH
Q 006615 448 IDFYGI----SKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK----CKRDFDAINVLEEMIFSGIVPDVQTFS 519 (638)
Q Consensus 448 i~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~ 519 (638)
-..|.. ..+.++|...|+...+.+. ...+..|...|.. ..+.++|...|+...+.|. ++.....
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-------~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l 396 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNGQ-------NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLA 396 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTTC-------TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHH
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhCh-------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHH
Confidence 555554 3477778887777654321 1345555555553 4577888888888887764 3333333
Q ss_pred HHHHHHHccCCHHHHHHHHHHHH
Q 006615 520 GLMYHFALQGDEKIVQKLFSMVR 542 (638)
Q Consensus 520 ~li~~~~~~g~~~~a~~l~~~m~ 542 (638)
..+......++.++|.++.++-.
T Consensus 397 ~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 397 TQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHH
Confidence 33333334445666766666544
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.18 E-value=5.1e-09 Score=93.00 Aligned_cols=165 Identities=13% Similarity=0.118 Sum_probs=107.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 006615 102 QSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181 (638)
Q Consensus 102 ~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 181 (638)
..+|..+...+...|++++|...|++..+.. +.+...+..+...|.+.|++++|...++...... +.+...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 4466667777777777777777777766543 3345566667777777777777777777766553 3345566666666
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHH
Q 006615 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA 261 (638)
Q Consensus 182 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 261 (638)
+...++++.|.+.+.+..+... -+...+..+...|.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 6777777777777777666421 245666666677777777777777777665532 22456667777777777777777
Q ss_pred HHHHHHHHh
Q 006615 262 KSLLNEMRD 270 (638)
Q Consensus 262 ~~l~~~m~~ 270 (638)
.+.|++..+
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777655
No 68
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.17 E-value=6.5e-07 Score=95.25 Aligned_cols=458 Identities=9% Similarity=0.002 Sum_probs=261.7
Q ss_pred hhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCC---HHHHHH
Q 006615 82 ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD---LELVLS 158 (638)
Q Consensus 82 ~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~---~~~A~~ 158 (638)
..+.+..|+.....+ +.|...|..++..+.+.+.++.+..+|+++... ++.....|...+..-.+.|+ ++.+..
T Consensus 48 ~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 344454555544432 357779999999999999999999999999876 45666778888888888888 999999
Q ss_pred HHHHHHhcC-CCCCHHhHHHHHHHHHhcCCh--------HHHHHHHHHHHH-cCC-CCC-HHHHHHHHHHHH--------
Q 006615 159 TWNEYRQRA-KLLSTESYNIVMSVYAKTGKN--------FEAVETFRQVID-EGA-IPN-SRTYTVMIEHLV-------- 218 (638)
Q Consensus 159 l~~~m~~~~-~~p~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~ty~~li~~~~-------- 218 (638)
+|++..... ..|++..|...+.-..+.++. +.+.++|+.... .|. .|+ ...|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999998763 248899998888776665543 334477877665 366 564 456766665432
Q ss_pred -HcCCHHHHHHHHHhcccCCCccCHhHHHHH---HHHHHc----------cCCHHHHHHHHHHHHh--CCCC---CCHH-
Q 006615 219 -NLGKLDSALEVFSALPLMRIKRTSKQYLIL---VEGFVG----------VERFDEAKSLLNEMRD--DGKF---PGRA- 278 (638)
Q Consensus 219 -~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l---i~~~~~----------~g~~~~A~~l~~~m~~--~g~~---p~~~- 278 (638)
..++++.+.++|+.........-..+|... ...+.. ..+++.|...+.++.. .++. |...
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 344578889999988753221122334322 221100 0122333333333211 1110 0000
Q ss_pred H--HHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcC
Q 006615 279 M--RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEW 356 (638)
Q Consensus 279 ~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (638)
. ...+-.. .........+|.....- +. . ....++.....+-+...
T Consensus 285 ~~~~~~~p~~--~~~~~~ql~lW~~yi~f------------------Ek--~-----------~~~~l~~~~~~~Rv~~~ 331 (679)
T 4e6h_A 285 QATESNLPKP--NEYDVQQLLIWLEWIRW------------------ES--D-----------NKLELSDDLHKARMTYV 331 (679)
T ss_dssp TCCTTTSCCT--TCCCHHHHHHHHHHHHH------------------HH--T-----------CTTCCCHHHHHHHHHHH
T ss_pred cchhccCCCC--chhHHHHHHHHHHHHHH------------------HH--h-----------CCccccchhhHHHHHHH
Confidence 0 0000000 00000111111111000 00 0 00000000000000000
Q ss_pred CHHHHHHhhcCCcccchHHHHHHHhccCChhHHH-HHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006615 357 SPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAW-HFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD 435 (638)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 435 (638)
+...+.........| ...+..+...++.++|. ++|...... ++.+...|-..+...-+.|+++.|.++|+.+...
T Consensus 332 Ye~aL~~~p~~~~lW--~~ya~~~~~~~~~~~a~r~il~rAi~~--~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 332 YMQAAQHVCFAPEIW--FNMANYQGEKNTDSTVITKYLKLGQQC--IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp HHHHHHHTTTCHHHH--HHHHHHHHHHSCCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHH--HHHHHHHHhcCcHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 111111111111122 22344455567778886 888887532 2345566777888888889999999999988754
Q ss_pred CC---------CCC------------HHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHcc-
Q 006615 436 GM---------RLP------------FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKC- 493 (638)
Q Consensus 436 g~---------~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 493 (638)
.. .|+ ..+|...+....+.|..+.|.++|....+..+. ..+ ..|-..+..-.+.
T Consensus 408 l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~---~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 408 IHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTP---DIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCT---HHHHHHHHHHHTTT
T ss_pred HHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CCh---HHHHHHHHHHHHhC
Confidence 10 132 235667777777788899999999987764111 112 2333322223333
Q ss_pred CChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCH
Q 006615 494 KRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDA 573 (638)
Q Consensus 494 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~ 573 (638)
++.+.|.++|+...+. +.-+...|...+.-....|+.+.|..+|+......-.+. -..
T Consensus 484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~---------------------~~~ 541 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH---------------------LLK 541 (679)
T ss_dssp SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT---------------------HHH
T ss_pred CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH---------------------HHH
Confidence 4588999999988775 223455566777777788999999999998887531111 124
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHccCC
Q 006615 574 ATKELLKKSLWKEGRRKEAAAVEERCEKINDV 605 (638)
Q Consensus 574 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (638)
..|...+..-.+.|+.+.+.++.+++.+..+.
T Consensus 542 ~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 542 MIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 56788888888999999999999999998764
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.17 E-value=3.7e-09 Score=93.94 Aligned_cols=167 Identities=12% Similarity=0.139 Sum_probs=142.0
Q ss_pred CchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006615 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214 (638)
Q Consensus 135 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li 214 (638)
.+..+|..+...|.+.|++++|...|++..+.+ +-+..+|..+..+|.+.|++++|.+.+......... +...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 356779999999999999999999999999875 457889999999999999999999999999886432 677788888
Q ss_pred HHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHH
Q 006615 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQG 294 (638)
Q Consensus 215 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~ 294 (638)
..+...++++.|.+.+.+..+.. +.+...+..+...|.+.|++++|++.|++..+........++.+...+.+.|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88999999999999999887643 33677899999999999999999999999987654333344588899999999999
Q ss_pred HHHHHHHhCc
Q 006615 295 ANEFLREMLP 304 (638)
Q Consensus 295 a~~~~~~~~~ 304 (638)
|.+.|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998753
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.16 E-value=9e-09 Score=99.97 Aligned_cols=215 Identities=10% Similarity=0.045 Sum_probs=166.3
Q ss_pred hHHHHHHHHHHcCCCCCCChhHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHhCCCCCchHhHHHHHHHHH
Q 006615 83 DSALSIMEALKSNPNFSHNQSTLHALATVLA-------KSQRN-------HELKTLIGDISSSKFLNVSVNFMNLMQWYS 148 (638)
Q Consensus 83 ~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~~~~-------~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~ 148 (638)
++|+.+|+.+.... +.+...|..+...+. ..|++ ++|..+|++..+.-.+.+...|..+...+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 68889999888653 334557777777765 35776 899999999987422445668999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCC-HH-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHH
Q 006615 149 TSGDLELVLSTWNEYRQRAKLLS-TE-SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV-NLGKLDS 225 (638)
Q Consensus 149 ~~g~~~~A~~l~~~m~~~~~~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~-~~g~~~~ 225 (638)
+.|++++|..+|++..+.. |+ .. .|..+...+.+.|++++|..+|++..+... ++...|........ ..|+.++
T Consensus 111 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998853 43 43 899999999999999999999999988532 34455543333322 2699999
Q ss_pred HHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCC--H-HHHHHHHHHHHcCChHHHHHHHHH
Q 006615 226 ALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPG--R-AMRVALERMQEMGFIQGANEFLRE 301 (638)
Q Consensus 226 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~--~-~~~~ll~~~~~~g~~~~a~~~~~~ 301 (638)
|.++|++..+.. +-+...|..++..+.+.|++++|..+|++..... +.|+ . .+...+....+.|+.+.|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999887632 2357889999999999999999999999998874 4553 2 333667777889999999999988
Q ss_pred hC
Q 006615 302 ML 303 (638)
Q Consensus 302 ~~ 303 (638)
..
T Consensus 267 a~ 268 (308)
T 2ond_A 267 RF 268 (308)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.16 E-value=4.7e-09 Score=105.59 Aligned_cols=234 Identities=9% Similarity=0.021 Sum_probs=156.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccC----C--CccCHhHHH
Q 006615 178 VMSVYAKTGKNFEAVETFRQVIDE----GAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLM----R--IKRTSKQYL 246 (638)
Q Consensus 178 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~----g--~~p~~~~~~ 246 (638)
....+...|++++|.+.|++..+. +-.+ ...+|..+...|...|++++|.+.+++..+. + ......+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344566777788887777777653 1111 2356667777777788877777777765431 1 011245677
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCC-CCH-----HHHHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCC
Q 006615 247 ILVEGFVGVERFDEAKSLLNEMRDDGKF-PGR-----AMRVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDD 320 (638)
Q Consensus 247 ~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~-----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (638)
.+...|...|++++|.+.|++..+.... ++. ..+.+...+...|++++|...+++...
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~---------------- 252 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA---------------- 252 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------------
Confidence 7888888888888888888877542111 111 223566777788888888887766521
Q ss_pred ccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCC
Q 006615 321 DEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQP 400 (638)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 400 (638)
++. ..
T Consensus 253 -----------------------------------------------------------------------~~~----~~ 257 (383)
T 3ulq_A 253 -----------------------------------------------------------------------VFE----ES 257 (383)
T ss_dssp -----------------------------------------------------------------------HHH----HT
T ss_pred -----------------------------------------------------------------------HHH----hh
Confidence 000 01
Q ss_pred CC-cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHcccCC---HHHHHHHHHhchhccC
Q 006615 401 GY-THDVYALEKMLTILARHGHVELVDRLIAKLRSD----GMRLPFSTIRLIIDFYGISKK---ADAALKAFHDDRTLCG 472 (638)
Q Consensus 401 ~~-~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~ 472 (638)
+. .....++..+...+.+.|++++|.+.+++.... +-......+..+...|...|+ +++|..+++...
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---- 333 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---- 333 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT----
T ss_pred ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc----
Confidence 11 123556788888999999999999999887643 211122345677788899998 888888888752
Q ss_pred CCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 006615 473 PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF 508 (638)
Q Consensus 473 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 508 (638)
..+.....+..+...|.+.|++++|.+.|++..+
T Consensus 334 --~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 334 --LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2444456788899999999999999999998865
No 72
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.15 E-value=1.3e-08 Score=101.97 Aligned_cols=316 Identities=9% Similarity=-0.072 Sum_probs=202.4
Q ss_pred CCCchHhHHHHHHHH--HhcCCHHHHHHHHHHHHhc--CCC--CCHHhHHHHHHH--HHhcCChHHHH---------HHH
Q 006615 133 FLNVSVNFMNLMQWY--STSGDLELVLSTWNEYRQR--AKL--LSTESYNIVMSV--YAKTGKNFEAV---------ETF 195 (638)
Q Consensus 133 ~~~~~~~~~~ll~~~--~~~g~~~~A~~l~~~m~~~--~~~--p~~~~~~~li~~--~~~~g~~~~A~---------~~~ 195 (638)
..|+..+-+.|-.+| .+.+++++|..+++++.+. .+. +++..|-.++.. ..-.+.+..+. +.+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 345666666677777 7888888888888877553 121 223334444332 11112222222 555
Q ss_pred HHHHHcCCCCC-HH---HHHHHHHHHHHcCCHHHHHHHHHhcccCCC-cc----CHhHHHHHHHHHHccCCHHHHHHHHH
Q 006615 196 RQVIDEGAIPN-SR---TYTVMIEHLVNLGKLDSALEVFSALPLMRI-KR----TSKQYLILVEGFVGVERFDEAKSLLN 266 (638)
Q Consensus 196 ~~m~~~g~~p~-~~---ty~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p----~~~~~~~li~~~~~~g~~~~A~~l~~ 266 (638)
+.+.......+ .. .|-.....+...|++++|.+.|++..+..- .+ ...++..+...|...|++++|...++
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 55443211101 11 122233446688999999999988764311 12 24567888889999999999999988
Q ss_pred HHHhCCC-----CCCHH-H-HHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCcccccccc
Q 006615 267 EMRDDGK-----FPGRA-M-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQ 339 (638)
Q Consensus 267 ~m~~~g~-----~p~~~-~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (638)
+...... .+... . ..+...+...|++++|.+.+++...
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~----------------------------------- 210 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALE----------------------------------- 210 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------------
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----------------------------------
Confidence 8754211 11111 2 2556777888888888888776521
Q ss_pred ccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCC-cCCHHHHHHHHHHHHh
Q 006615 340 LKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGY-THDVYALEKMLTILAR 418 (638)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~ 418 (638)
+... .+- .....++..+..+|..
T Consensus 211 ----------------------------------------------------~~~~----~~~~~~~~~~~~~lg~~y~~ 234 (378)
T 3q15_A 211 ----------------------------------------------------LAMD----IQNDRFIAISLLNIANSYDR 234 (378)
T ss_dssp ----------------------------------------------------HHHH----TTCHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------HHHH----cCCHHHHHHHHHHHHHHHHH
Confidence 0000 000 1123457778888999
Q ss_pred cCChHHHHHHHHHHHH-----cCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHcc
Q 006615 419 HGHVELVDRLIAKLRS-----DGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKC 493 (638)
Q Consensus 419 ~g~~~~a~~l~~~m~~-----~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 493 (638)
.|++++|.+.+++... .... ...++..+...|.+.|++++|...+++..+.......+.....+..+...+...
T Consensus 235 ~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~ 313 (378)
T 3q15_A 235 SGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKET 313 (378)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSS
T ss_pred CCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCC
Confidence 9999999999998776 3332 367788888999999999999999999877655544555445677777778888
Q ss_pred CC---hHHHHHHHHHHHhCCCCcc-hhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615 494 KR---DFDAINVLEEMIFSGIVPD-VQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543 (638)
Q Consensus 494 g~---~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~ 543 (638)
|+ ..+|+..+++ .+..|+ ...+..+...|...|++++|.+.|++..+
T Consensus 314 ~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 314 VDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88 7777777766 333343 34566788899999999999999988764
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.10 E-value=3.6e-09 Score=109.34 Aligned_cols=218 Identities=9% Similarity=-0.051 Sum_probs=157.3
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006615 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN-FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVF 230 (638)
Q Consensus 152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~ 230 (638)
.++++...+++..... +.+...|..+...+...|++ ++|.+.|++..+... -+...|..+...|.+.|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566677777665543 34677788888888888888 888888888877532 24778888888888888888888888
Q ss_pred HhcccCCCccCHhHHHHHHHHHHcc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--------CChH
Q 006615 231 SALPLMRIKRTSKQYLILVEGFVGV---------ERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEM--------GFIQ 293 (638)
Q Consensus 231 ~~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~--------g~~~ 293 (638)
++..+. .|+...|..+...|... |++++|.+.|++..+........++.+...+... |+++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 887764 46777788888888888 8888899888888775433333344666666666 6677
Q ss_pred HHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccch
Q 006615 294 GANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTT 373 (638)
Q Consensus 294 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (638)
+|...|++....
T Consensus 239 ~A~~~~~~al~~-------------------------------------------------------------------- 250 (474)
T 4abn_A 239 QALSAYAQAEKV-------------------------------------------------------------------- 250 (474)
T ss_dssp HHHHHHHHHHHH--------------------------------------------------------------------
T ss_pred HHHHHHHHHHHh--------------------------------------------------------------------
Confidence 777766655210
Q ss_pred HHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcc
Q 006615 374 RLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGI 453 (638)
Q Consensus 374 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~ 453 (638)
.+...-+...|..+..+|...|++++|.+.|++..+.... +...+..+..++..
T Consensus 251 -------------------------~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~ 304 (474)
T 4abn_A 251 -------------------------DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEF 304 (474)
T ss_dssp -------------------------CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred -------------------------CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 0000136777888888999999999999999988876543 55677777778888
Q ss_pred cCCHHHHHHHHHhc
Q 006615 454 SKKADAALKAFHDD 467 (638)
Q Consensus 454 ~g~~~~A~~~~~~~ 467 (638)
.|++++|...+..+
T Consensus 305 lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 305 LSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhccc
Confidence 88888887766654
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.09 E-value=5e-08 Score=97.58 Aligned_cols=136 Identities=13% Similarity=0.039 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHcccCCHHHHHHHHHhchhccCCCcchhHH
Q 006615 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLP--FSTIR----LIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM 480 (638)
Q Consensus 407 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~--~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 480 (638)
..+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...++............. .
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~ 253 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL-Q 253 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG-H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh-H
Confidence 4566777788888999999888888764321111 11111 233447788999999999988765432211111 2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHh----CCCCcch-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615 481 LLYSSLLRTLTKCKRDFDAINVLEEMIF----SGIVPDV-QTFSGLMYHFALQGDEKIVQKLFSMVRQ 543 (638)
Q Consensus 481 ~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~-~t~~~li~~~~~~g~~~~a~~l~~~m~~ 543 (638)
..+..+...+...|+.++|.+.+++... .|..++. ..+..+..++...|+.++|...+++...
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3567778889999999999999988754 2322333 2566677788899999999999988765
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.09 E-value=3.8e-09 Score=102.52 Aligned_cols=231 Identities=13% Similarity=0.121 Sum_probs=158.2
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHcC------CCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC------C-CCCch
Q 006615 71 IVTHALRSAPNADSALSIMEALKSN------PNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS------K-FLNVS 137 (638)
Q Consensus 71 ~~~~~l~~~~~~~~Al~~~~~~~~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~------~-~~~~~ 137 (638)
.+...+...|++++|+..|+.+.+. +........+..+...+...|++++|...+++..+. + .+...
T Consensus 32 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 111 (311)
T 3nf1_A 32 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVA 111 (311)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence 4667888999999999999988752 011233456888888999999999999999887653 2 23345
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC-CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc------CCC
Q 006615 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQR------AK-LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE------GAI 204 (638)
Q Consensus 138 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~------~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~ 204 (638)
..+..+...|...|++++|...|++..+. +- +....++..+...+...|++++|.+.|++..+. +-.
T Consensus 112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 191 (311)
T 3nf1_A 112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD 191 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 67888999999999999999999988764 21 224566888899999999999999999998774 223
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccC-------CCccC-------HhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006615 205 P-NSRTYTVMIEHLVNLGKLDSALEVFSALPLM-------RIKRT-------SKQYLILVEGFVGVERFDEAKSLLNEMR 269 (638)
Q Consensus 205 p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~ 269 (638)
| ...++..+...|...|++++|.+.|++..+. ...+. ...+..+...+...+.+.++...+.+..
T Consensus 192 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 271 (311)
T 3nf1_A 192 PNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACK 271 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcC
Confidence 3 3557888899999999999999999987742 11111 1122333333444555666666666654
Q ss_pred hCCCCCCH--HHHHHHHHHHHcCChHHHHHHHHHhC
Q 006615 270 DDGKFPGR--AMRVALERMQEMGFIQGANEFLREML 303 (638)
Q Consensus 270 ~~g~~p~~--~~~~ll~~~~~~g~~~~a~~~~~~~~ 303 (638)
.. .|+. ....+...|.+.|++++|...+++..
T Consensus 272 ~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 272 VD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 42 2332 23467788899999999999888754
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.08 E-value=1.3e-08 Score=90.19 Aligned_cols=163 Identities=16% Similarity=0.101 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHH
Q 006615 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183 (638)
Q Consensus 104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 183 (638)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...|..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34445555555666666666665555432 2334455556666666666666666666655543 334555666666666
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHH
Q 006615 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263 (638)
Q Consensus 184 ~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 263 (638)
..|++++|.+.|++..+.. +.+...+..+...+.+.|++++|.+.+++..+.. ..+..++..+...+...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666665542 2245555555566666666666666666554432 2234555556666666666666666
Q ss_pred HHHHHHh
Q 006615 264 LLNEMRD 270 (638)
Q Consensus 264 l~~~m~~ 270 (638)
.+++..+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 77
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.07 E-value=1.9e-06 Score=91.78 Aligned_cols=419 Identities=9% Similarity=0.007 Sum_probs=266.4
Q ss_pred HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCC---hHHHHHHHHHHHhCC-CCCchHhHHHHHHHH
Q 006615 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR---NHELKTLIGDISSSK-FLNVSVNFMNLMQWY 147 (638)
Q Consensus 72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~l~~~~~~~~-~~~~~~~~~~ll~~~ 147 (638)
++..+.+.+.++.+..+|+.+... ++.....|...+..-.+.++ .+.+..+|++..... .+|++..|..-+...
T Consensus 72 yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~ 149 (679)
T 4e6h_A 72 LLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYV 149 (679)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 667777889999999999999875 34556678888888888888 999999999998754 247888888888776
Q ss_pred HhcCCH--------HHHHHHHHHHHh-cCC-CC-CHHhHHHHHHHHH---------hcCChHHHHHHHHHHHHcCCCCCH
Q 006615 148 STSGDL--------ELVLSTWNEYRQ-RAK-LL-STESYNIVMSVYA---------KTGKNFEAVETFRQVIDEGAIPNS 207 (638)
Q Consensus 148 ~~~g~~--------~~A~~l~~~m~~-~~~-~p-~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~g~~p~~ 207 (638)
.+.++. +.+.++|+.... .|. .+ +...|...+.-.. ..++++.+..+|++........-.
T Consensus 150 ~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~ 229 (679)
T 4e6h_A 150 RKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLE 229 (679)
T ss_dssp HHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHH
T ss_pred HHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHH
Confidence 666554 345578887654 355 44 3567888776543 234577889999998863111112
Q ss_pred HHHHHH---HHHH----------HHcCCHHHHHHHHHhccc--CCCc---------------c--C------HhHHHHHH
Q 006615 208 RTYTVM---IEHL----------VNLGKLDSALEVFSALPL--MRIK---------------R--T------SKQYLILV 249 (638)
Q Consensus 208 ~ty~~l---i~~~----------~~~g~~~~A~~~~~~m~~--~g~~---------------p--~------~~~~~~li 249 (638)
.+|... -... -...+++.|...+.++.. .++. | + ...|...+
T Consensus 230 ~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi 309 (679)
T 4e6h_A 230 SMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWI 309 (679)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHH
Confidence 333221 1111 011234445555544211 0110 1 0 13455555
Q ss_pred HHHHccC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHH-HHHHHhCcCccccccccccCCCCCc
Q 006615 250 EGFVGVE-------RFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGAN-EFLREMLPDKRIKNVRYYEDGSDDD 321 (638)
Q Consensus 250 ~~~~~~g-------~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (638)
.---..+ ..+.+..+|++....-......++....-+...|+.++|. .++++.... .|
T Consensus 310 ~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--~P------------ 375 (679)
T 4e6h_A 310 RWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC--IP------------ 375 (679)
T ss_dssp HHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--CT------------
T ss_pred HHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--CC------------
Confidence 4433332 1234566788776654443444555555566778888886 887765210 00
Q ss_pred cccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCC-
Q 006615 322 EDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQP- 400 (638)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~- 400 (638)
..... ....+......|+++.|.++|+......
T Consensus 376 --------------------------------------------~s~~L--wl~~a~~ee~~~~~e~aR~iyek~l~~l~ 409 (679)
T 4e6h_A 376 --------------------------------------------NSAVL--AFSLSEQYELNTKIPEIETTILSCIDRIH 409 (679)
T ss_dssp --------------------------------------------TCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------CCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 00000 1224455566788999999999876421
Q ss_pred -------CCcCC------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHcccCCHHH
Q 006615 401 -------GYTHD------------VYALEKMLTILARHGHVELVDRLIAKLRSD-G-MRLPFSTIRLIIDFYGISKKADA 459 (638)
Q Consensus 401 -------~~~p~------------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g-~~~~~~~~~~li~~~~~~g~~~~ 459 (638)
.-.|+ ...|...+....+.|..+.|..+|....+. + ..+......+.+.- ...++.+.
T Consensus 410 ~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~-~~~~d~e~ 488 (679)
T 4e6h_A 410 LDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY-HISKDTKT 488 (679)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH-TTTSCCHH
T ss_pred HHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-HhCCCHHH
Confidence 00132 336888888888899999999999999876 3 22223333333332 22355999
Q ss_pred HHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCc--chhhHHHHHHHHHccCCHHHHHHH
Q 006615 460 ALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP--DVQTFSGLMYHFALQGDEKIVQKL 537 (638)
Q Consensus 460 A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~a~~l 537 (638)
|.++|+...+..+ +....|...+......|+.+.|..+|++.......+ ....|...+.--.+.|+.+.+..+
T Consensus 489 Ar~ife~~Lk~~p-----~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 489 ACKVLELGLKYFA-----TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp HHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHHHCC-----CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999887633 223567888888888999999999999998864322 346788888888899999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHH
Q 006615 538 FSMVRQNGVEPDAYMFKVLIQAY 560 (638)
Q Consensus 538 ~~~m~~~~~~p~~~~~~~li~~~ 560 (638)
.+++.+. .|+......+++-|
T Consensus 564 ~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 564 EKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHh--CCCCcHHHHHHHHh
Confidence 9999985 46655444444433
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.06 E-value=1e-07 Score=95.29 Aligned_cols=178 Identities=13% Similarity=0.092 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHH
Q 006615 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRL----PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLL 482 (638)
Q Consensus 407 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 482 (638)
..+..+...+...|++++|...+++........ ...++..+...+...|++++|...+++..........+.....
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 215 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 215 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH
Confidence 456667788899999999999999877543221 2356777888899999999999999987765322222211111
Q ss_pred H--HHHHHHHHccCChHHHHHHHHHHHhCCCCcc---hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 006615 483 Y--SSLLRTLTKCKRDFDAINVLEEMIFSGIVPD---VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLI 557 (638)
Q Consensus 483 ~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li 557 (638)
. ...+..+...|+.++|.+.+++.......++ ...+..+...+...|++++|.+.++......-
T Consensus 216 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~----------- 284 (373)
T 1hz4_A 216 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR----------- 284 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----------
Confidence 1 1334457799999999999998876432211 23466778899999999999999988765310
Q ss_pred HHHHHHhhhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHcc
Q 006615 558 QAYCKYLSNSNLMPDA-ATKELLKKSLWKEGRRKEAAAVEERCEKIN 603 (638)
Q Consensus 558 ~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 603 (638)
..|..++. ..+..+..++...|+.++|.+.+++..+..
T Consensus 285 --------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 285 --------SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp --------HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred --------hCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 11111222 255667788889999999999998877643
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.06 E-value=1e-08 Score=90.78 Aligned_cols=164 Identities=15% Similarity=0.102 Sum_probs=138.9
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006615 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216 (638)
Q Consensus 137 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~ 216 (638)
...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3456778889999999999999999988764 4568889999999999999999999999998863 2367888999999
Q ss_pred HHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHH
Q 006615 217 LVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGAN 296 (638)
Q Consensus 217 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~ 296 (638)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++............+.+...+...|++++|.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999987643 3467888999999999999999999999998765333234457788899999999999
Q ss_pred HHHHHhC
Q 006615 297 EFLREML 303 (638)
Q Consensus 297 ~~~~~~~ 303 (638)
..++...
T Consensus 165 ~~~~~~~ 171 (186)
T 3as5_A 165 PHFKKAN 171 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998875
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.04 E-value=4.5e-08 Score=98.16 Aligned_cols=320 Identities=13% Similarity=-0.003 Sum_probs=205.7
Q ss_pred CCCHHhHHHHHHHH--HhcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHH--HHHcCCHHHHH---------HHHH
Q 006615 169 LLSTESYNIVMSVY--AKTGKNFEAVETFRQVIDE--GAIPN--SRTYTVMIEH--LVNLGKLDSAL---------EVFS 231 (638)
Q Consensus 169 ~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~p~--~~ty~~li~~--~~~~g~~~~A~---------~~~~ 231 (638)
.|+..+-+.|-..| .+.+++++|.+++++..+. .++.| ...|-.++.. ..-.+.++.+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 45555556666666 7899999999999988663 23333 3333444432 11112222222 5555
Q ss_pred hcccCCCccCH-h---HHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCH-----HHHHHHHHHHHcCChHHHHHHHHH
Q 006615 232 ALPLMRIKRTS-K---QYLILVEGFVGVERFDEAKSLLNEMRDDGK-FPGR-----AMRVALERMQEMGFIQGANEFLRE 301 (638)
Q Consensus 232 ~m~~~g~~p~~-~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~-----~~~~ll~~~~~~g~~~~a~~~~~~ 301 (638)
.+.......+. . .|......+...|++++|...|++....-. .++. ..+.+...+...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 54331111111 1 223344556788999999999999865421 1232 123566778888998888888776
Q ss_pred hCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHh
Q 006615 302 MLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLR 381 (638)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (638)
...
T Consensus 167 al~----------------------------------------------------------------------------- 169 (378)
T 3q15_A 167 ALD----------------------------------------------------------------------------- 169 (378)
T ss_dssp HHH-----------------------------------------------------------------------------
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 521
Q ss_pred ccCChhHHHHHHHHHhcCCCCcC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHcccC
Q 006615 382 HFKSPETAWHFFCWVAYQPGYTH-DVYALEKMLTILARHGHVELVDRLIAKLRSD----GMRL-PFSTIRLIIDFYGISK 455 (638)
Q Consensus 382 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~~-~~~~~~~li~~~~~~g 455 (638)
++.. ..+..+ ...+++.+..+|...|++++|.+.+++..+. +..+ ...++..+...|...|
T Consensus 170 ----------~~~~---~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~ 236 (378)
T 3q15_A 170 ----------IYQN---HPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG 236 (378)
T ss_dssp ----------HHHT---STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ----------HHHh---CCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1110 001111 2456778888999999999999999887642 2111 2356778888999999
Q ss_pred CHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCC----CCcchhhHHHHHHHHHccCC-
Q 006615 456 KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSG----IVPDVQTFSGLMYHFALQGD- 530 (638)
Q Consensus 456 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~li~~~~~~g~- 530 (638)
++++|...|++..+.......|....++..+...+.+.|+.++|.+.+++..+.. -+.....++.+-..+...|+
T Consensus 237 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~ 316 (378)
T 3q15_A 237 DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDE 316 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCH
T ss_pred CHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 9999999999987633222345546788999999999999999999999987732 11223345666667777888
Q ss_pred --HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcc
Q 006615 531 --EKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIN 603 (638)
Q Consensus 531 --~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 603 (638)
+.+|...++. .+..|+ ....+..+...|.+.|++++|.+.+++..+..
T Consensus 317 ~~~~~al~~~~~---~~~~~~----------------------~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 317 RKIHDLLSYFEK---KNLHAY----------------------IEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHHHH---TTCHHH----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCChhH----------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 6777776665 221111 23456778999999999999999999987643
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.98 E-value=1.7e-08 Score=108.61 Aligned_cols=161 Identities=13% Similarity=0.135 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 006615 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVY 182 (638)
Q Consensus 103 ~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~ 182 (638)
..|+.+..++...|++++|...|++..+.. +.+...|+.|..+|.+.|++++|+..|++..+.+ +-+..+|+.+..+|
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 356666666666666666666666655532 2334455666666666666666666666665543 23355666666666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCcc-CHhHHHHHHHHHHccCCHHH
Q 006615 183 AKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR-TSKQYLILVEGFVGVERFDE 260 (638)
Q Consensus 183 ~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~ 260 (638)
.+.|++++|.+.|++..+. .| +...|+.+...|.+.|++++|.+.|++..+. .| +...|..+...|...|++++
T Consensus 88 ~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHH
Confidence 6666666666666666553 23 3555666666666666666666666665543 23 34555666666666666666
Q ss_pred HHHHHHHHH
Q 006615 261 AKSLLNEMR 269 (638)
Q Consensus 261 A~~l~~~m~ 269 (638)
|.+.+++..
T Consensus 164 A~~~~~kal 172 (723)
T 4gyw_A 164 YDERMKKLV 172 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665553
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.96 E-value=3.1e-08 Score=94.44 Aligned_cols=219 Identities=11% Similarity=-0.002 Sum_probs=155.8
Q ss_pred CChhHHHHHHHHHhc------CCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHH
Q 006615 384 KSPETAWHFFCWVAY------QPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSD------GMRL-PFSTIRLIIDF 450 (638)
Q Consensus 384 ~~~~~a~~~~~~~~~------~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------g~~~-~~~~~~~li~~ 450 (638)
+++++|...|++... ....+....++..+...|...|++++|...+++.... +-.| ...++..+...
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 94 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 455555555544432 1122234567889999999999999999999988754 2223 34678888999
Q ss_pred HcccCCHHHHHHHHHhchhccC---CCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhC------CCCc-chhhHHH
Q 006615 451 YGISKKADAALKAFHDDRTLCG---PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS------GIVP-DVQTFSG 520 (638)
Q Consensus 451 ~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~~~ 520 (638)
|...|++++|...|++...... ....|....+|..+...|...|++++|.+.|++..+. +-.| ...++..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 9999999999999998765421 1113555688999999999999999999999998774 2133 3567888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhC-------CCCCCHhhHHHHHHHHHHH----------------hhhCC-CCC-CHHH
Q 006615 521 LMYHFALQGDEKIVQKLFSMVRQN-------GVEPDAYMFKVLIQAYCKY----------------LSNSN-LMP-DAAT 575 (638)
Q Consensus 521 li~~~~~~g~~~~a~~l~~~m~~~-------~~~p~~~~~~~li~~~~~~----------------m~~~g-~~p-~~~~ 575 (638)
+...|...|++++|.+.++++.+. ...+....+......+... ....+ ..| ...+
T Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTT 254 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999988763 2334433333333322222 11111 123 2557
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHc
Q 006615 576 KELLKKSLWKEGRRKEAAAVEERCEKI 602 (638)
Q Consensus 576 ~~~li~~~~~~g~~~~A~~~~~~~~~~ 602 (638)
+..+...|.+.|++++|.+++++..+.
T Consensus 255 ~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 255 LRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888999999999999999999997764
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.94 E-value=1.3e-08 Score=97.17 Aligned_cols=225 Identities=14% Similarity=0.119 Sum_probs=149.5
Q ss_pred HcCCChhHHHHHHHHHHc------CCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC------CC-CCchHhHHHH
Q 006615 77 RSAPNADSALSIMEALKS------NPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS------KF-LNVSVNFMNL 143 (638)
Q Consensus 77 ~~~~~~~~Al~~~~~~~~------~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~------~~-~~~~~~~~~l 143 (638)
...|++++|+..|+...+ ..........+..+...+...|++++|...+++..+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 445666666666665553 1111224557888888999999999999999887653 22 2345578889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc------C-CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHHH
Q 006615 144 MQWYSTSGDLELVLSTWNEYRQR------A-KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE------GAIP-NSRT 209 (638)
Q Consensus 144 l~~~~~~g~~~~A~~l~~~m~~~------~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t 209 (638)
...|...|++++|...|++.... . .+....+|..+...|...|++++|.+.|++..+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999987754 1 1234667888999999999999999999998874 1123 3567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccC-------CCcc-CHhHHHHHHHHHHccCCHHH------HHHHHHHHHhCCCCC
Q 006615 210 YTVMIEHLVNLGKLDSALEVFSALPLM-------RIKR-TSKQYLILVEGFVGVERFDE------AKSLLNEMRDDGKFP 275 (638)
Q Consensus 210 y~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p-~~~~~~~li~~~~~~g~~~~------A~~l~~~m~~~g~~p 275 (638)
+..+...|.+.|++++|.+.|++..+. ...+ ....|..+...+...+.... +...++... ...|
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 249 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK--VDSP 249 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC--CCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC--CCCH
Confidence 888889999999999999999887642 1122 22334444444443333222 222222111 1112
Q ss_pred CHH--HHHHHHHHHHcCChHHHHHHHHHhC
Q 006615 276 GRA--MRVALERMQEMGFIQGANEFLREML 303 (638)
Q Consensus 276 ~~~--~~~ll~~~~~~g~~~~a~~~~~~~~ 303 (638)
+.. ...+...+...|++++|..++++..
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 222 2366788889999999999988754
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.93 E-value=3.5e-08 Score=106.26 Aligned_cols=160 Identities=14% Similarity=0.090 Sum_probs=111.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHH
Q 006615 69 PFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS 148 (638)
Q Consensus 69 ~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~ 148 (638)
+..+..++...|++++|++.|++..+.. +-+...+..+..++.+.|++++|...|++..+.. +.+...|..+..+|.
T Consensus 12 l~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 12 LNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4445666777777777777777776542 2234567777777777777777777777776643 334556777777777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 006615 149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSAL 227 (638)
Q Consensus 149 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~ 227 (638)
+.|++++|++.|++..+.+ +-+..+|+.+..+|.+.|++++|++.|++..+. .| +...|..+...+...|++++|.
T Consensus 89 ~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHHH
Confidence 7777777777777777654 335667777777777777777777777777764 34 4667777777777777777777
Q ss_pred HHHHhcc
Q 006615 228 EVFSALP 234 (638)
Q Consensus 228 ~~~~~m~ 234 (638)
+.+++..
T Consensus 166 ~~~~kal 172 (723)
T 4gyw_A 166 ERMKKLV 172 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.92 E-value=7.7e-08 Score=88.67 Aligned_cols=190 Identities=12% Similarity=-0.028 Sum_probs=145.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHH
Q 006615 404 HDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLY 483 (638)
Q Consensus 404 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 483 (638)
.|+..+......+...|++++|.+.|++..+....++...+..+..+|...|++++|...|++..+. .|+....|
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~ 79 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-----NYNLANAY 79 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCSHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-----CcchHHHH
Confidence 3567788888899999999999999999998876567777777889999999999999999998865 44445789
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCcc-h-------hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---Hhh
Q 006615 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPD-V-------QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD---AYM 552 (638)
Q Consensus 484 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~-------~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~---~~~ 552 (638)
..+...|...|++++|++.|++..+. .|+ . ..|..+-..+...|++++|.+.|++..+. .|+ ...
T Consensus 80 ~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~ 155 (228)
T 4i17_A 80 IGKSAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDA 155 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHH
Confidence 99999999999999999999999885 343 3 45777788889999999999999999875 565 344
Q ss_pred HHHHHHHHHHH-------hhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccCC
Q 006615 553 FKVLIQAYCKY-------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDV 605 (638)
Q Consensus 553 ~~~li~~~~~~-------m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (638)
+..+-..|... +...+ ..+...|..+. ....|.+++|.+.+++..+..+.
T Consensus 156 ~~~l~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 156 LYSLGVLFYNNGADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC
Confidence 54454444433 11111 12344443333 33567789999999999998753
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.89 E-value=2.8e-07 Score=88.54 Aligned_cols=102 Identities=11% Similarity=0.033 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHH
Q 006615 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPF------STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLM 480 (638)
Q Consensus 407 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 480 (638)
.++..+...+.+.|++++|...|++.......... ..+..+..++...|++++|...|++..+..+........
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 45777888899999999999999998876543222 156667778888899999999998877653322211111
Q ss_pred HHHHHHHHHHH--ccCChHHHHHHHHHHHh
Q 006615 481 LLYSSLLRTLT--KCKRDFDAINVLEEMIF 508 (638)
Q Consensus 481 ~~~~~li~~~~--~~g~~~~A~~l~~~m~~ 508 (638)
..+..++..+. ..+++++|++.|+.+..
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 23444555554 35667777777766544
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.89 E-value=8.1e-08 Score=79.69 Aligned_cols=128 Identities=17% Similarity=0.267 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 006615 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219 (638)
Q Consensus 140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~ 219 (638)
|..+...+...|++++|..+|+++.+.+ +.+...|..+...+...|++++|...|+++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4556666666677777777776666543 3345566666666666677777777777666543 2245566666666667
Q ss_pred cCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615 220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRD 270 (638)
Q Consensus 220 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 270 (638)
.|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 777777777776665432 22455666667777777777777777776654
No 88
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.87 E-value=2.3e-07 Score=85.46 Aligned_cols=189 Identities=12% Similarity=0.051 Sum_probs=115.6
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhc
Q 006615 71 IVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTS 150 (638)
Q Consensus 71 ~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~ 150 (638)
.....+...|++++|+..|+...+.. -.++...+..+..++...|++++|...+++..+.. +.+...+..+...|.+.
T Consensus 12 ~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 89 (228)
T 4i17_A 12 NEGNDALNAKNYAVAFEKYSEYLKLT-NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYRDM 89 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHc
Confidence 34456667777777877777776542 12455556667777777777777777777776643 23455667777777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCH-------HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc
Q 006615 151 GDLELVLSTWNEYRQRAKLLST-------ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN---SRTYTVMIEHLVNL 220 (638)
Q Consensus 151 g~~~~A~~l~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~ty~~li~~~~~~ 220 (638)
|++++|...|++..+.. +.+. ..|..+...+.+.|++++|.+.|++..+. .|+ ...|..+...|...
T Consensus 90 ~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~ 166 (228)
T 4i17_A 90 KNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNN 166 (228)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHH
Confidence 77777777777777654 2233 34666666777777777777777777663 444 34555555555444
Q ss_pred CCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615 221 GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDG 272 (638)
Q Consensus 221 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 272 (638)
|+ .+++++...+ ..+...|.... ....+.+++|...|++..+..
T Consensus 167 ~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 167 GA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 32 3333333322 12333343333 223455788888888877643
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.77 E-value=2.8e-07 Score=88.55 Aligned_cols=207 Identities=7% Similarity=0.017 Sum_probs=128.7
Q ss_pred ChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCc-hHhHHHHHHHHHhcCCHHH
Q 006615 81 NADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS----SKFLNV-SVNFMNLMQWYSTSGDLEL 155 (638)
Q Consensus 81 ~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~----~~~~~~-~~~~~~ll~~~~~~g~~~~ 155 (638)
++++|...|+.+ ...+...|++++|...|.+..+ .|-+++ ..+|+.+..+|.+.|++++
T Consensus 32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 377777777665 2345567788888777766543 222221 3567778888888888888
Q ss_pred HHHHHHHHHhcCC---CC--CHHhHHHHHHHHHhc-CChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCCHH
Q 006615 156 VLSTWNEYRQRAK---LL--STESYNIVMSVYAKT-GKNFEAVETFRQVIDEGAI-PN----SRTYTVMIEHLVNLGKLD 224 (638)
Q Consensus 156 A~~l~~~m~~~~~---~p--~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~-p~----~~ty~~li~~~~~~g~~~ 224 (638)
|...|++..+... .+ -..+|+.+...|... |++++|++.|++..+.... .+ ..+|+.+...+.+.|+++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 8888877654310 00 134677777888885 8888888888877653110 01 346777778888888888
Q ss_pred HHHHHHHhcccCCCccCH------hHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH----HH-HHHHHHH--HcCC
Q 006615 225 SALEVFSALPLMRIKRTS------KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA----MR-VALERMQ--EMGF 291 (638)
Q Consensus 225 ~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----~~-~ll~~~~--~~g~ 291 (638)
+|.+.|++..+....... ..|..+..++...|++++|...|++........... .. .++..+. ..++
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 888888887654322111 146667777888888888888888776532211111 12 3344443 3456
Q ss_pred hHHHHHHHHHhC
Q 006615 292 IQGANEFLREML 303 (638)
Q Consensus 292 ~~~a~~~~~~~~ 303 (638)
+++|...|+.+.
T Consensus 256 ~~~A~~~~~~~~ 267 (292)
T 1qqe_A 256 LSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHTTSS
T ss_pred HHHHHHHhccCC
Confidence 777777776654
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.75 E-value=2.7e-07 Score=76.44 Aligned_cols=129 Identities=16% Similarity=0.214 Sum_probs=109.1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHH
Q 006615 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252 (638)
Q Consensus 173 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 252 (638)
.+|..+...+...|++++|..+|+++.+.+. .+..++..+...+...|++++|.+.|+++.+.+ +.+...|..+...+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 3578888999999999999999999988642 367888889999999999999999999987654 34677888999999
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhC
Q 006615 253 VGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREML 303 (638)
Q Consensus 253 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 303 (638)
...|++++|.+.++++..........++.+...+...|++++|...++++.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 999999999999999987654333344577888999999999999998874
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.69 E-value=1.4e-06 Score=82.22 Aligned_cols=144 Identities=17% Similarity=0.109 Sum_probs=70.8
Q ss_pred HHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006615 121 LKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAK-LLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199 (638)
Q Consensus 121 a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 199 (638)
+...+++..+.+ .++..++..+..++...|++++|++++.+....|- .-+...+-.++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344445444433 23333344555555566666666666655544331 1234455555556666666666666666665
Q ss_pred HcCCCC-----CHHHHHHHHHHHHH--cC--CHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006615 200 DEGAIP-----NSRTYTVMIEHLVN--LG--KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMR 269 (638)
Q Consensus 200 ~~g~~p-----~~~ty~~li~~~~~--~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 269 (638)
+. .| +..+...|..++.. .| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 52 33 23444444444222 23 566666666665442 2332222333335555666666666665443
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.68 E-value=1.4e-06 Score=82.27 Aligned_cols=185 Identities=10% Similarity=0.010 Sum_probs=135.4
Q ss_pred HHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCchHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006615 85 ALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKF-LNVSVNFMNLMQWYSTSGDLELVLSTWNEY 163 (638)
Q Consensus 85 Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m 163 (638)
|+..|+.....+ .++...+..+..++...|++++|.+++.+.+..+. ..+...+..+++.+.+.|+.+.|.+.+++|
T Consensus 85 a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 677777776543 45566667888889999999999999999876653 246667788999999999999999999999
Q ss_pred HhcCCCC-----CHHhHHHHHHHH--HhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 006615 164 RQRAKLL-----STESYNIVMSVY--AKTG--KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234 (638)
Q Consensus 164 ~~~~~~p-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 234 (638)
.+.. | +..+...|..++ ...| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|++.++.+.
T Consensus 163 ~~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8764 5 355566666663 3334 899999999999775 4665555666678999999999999998765
Q ss_pred cC-----CC----ccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 006615 235 LM-----RI----KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM 279 (638)
Q Consensus 235 ~~-----g~----~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 279 (638)
+. .- .-|..+...+|......|+ +|.+++.++ ....|+..+
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL--~~~~P~hp~ 288 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQL--VKLDHEHAF 288 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHH--HHTTCCCHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHH--HHhCCCChH
Confidence 42 00 2256666556656666676 677777654 556665544
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.66 E-value=6.2e-07 Score=96.97 Aligned_cols=152 Identities=11% Similarity=-0.005 Sum_probs=80.7
Q ss_pred HhcCChHHHHHHHHHHH--------hCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHh
Q 006615 113 AKSQRNHELKTLIGDIS--------SSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK 184 (638)
Q Consensus 113 ~~~~~~~~a~~l~~~~~--------~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 184 (638)
...|++++|...+++.. +. .+.+...+..+...|.+.|++++|...|++..+.+ +.+...|..+..++.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 44555566655555554 21 12333445555555556666666666666555543 2344555555555556
Q ss_pred cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHH
Q 006615 185 TGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263 (638)
Q Consensus 185 ~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 263 (638)
.|++++|.+.|++..+.. | +...|..+...|.+.|++++ .+.|++..+.. .-+...|..+..++.+.|++++|.+
T Consensus 480 ~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666555532 2 34455555555555666655 55555554422 1234455555555666666666666
Q ss_pred HHHHHHh
Q 006615 264 LLNEMRD 270 (638)
Q Consensus 264 l~~~m~~ 270 (638)
.|++..+
T Consensus 556 ~~~~al~ 562 (681)
T 2pzi_A 556 TLDEVPP 562 (681)
T ss_dssp HHHTSCT
T ss_pred HHHhhcc
Confidence 6655543
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.64 E-value=2.1e-06 Score=80.86 Aligned_cols=178 Identities=10% Similarity=-0.070 Sum_probs=134.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHH
Q 006615 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP--FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLL 482 (638)
Q Consensus 405 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 482 (638)
+...+-.+...+.+.|++++|...|+++........ ...+..+..+|.+.|++++|...|+...+..+.. |....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID--PRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--TTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC--chhHHH
Confidence 556677778888999999999999999987653311 5677788889999999999999999988764432 232357
Q ss_pred HHHHHHHHHc--------cCChHHHHHHHHHHHhCCCCcch-hhH-----------------HHHHHHHHccCCHHHHHH
Q 006615 483 YSSLLRTLTK--------CKRDFDAINVLEEMIFSGIVPDV-QTF-----------------SGLMYHFALQGDEKIVQK 536 (638)
Q Consensus 483 ~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~-~t~-----------------~~li~~~~~~g~~~~a~~ 536 (638)
+..+..++.+ .|++++|++.|++..+. .|+. ... ..+...|.+.|++++|..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 7778888888 99999999999999875 3432 333 455778899999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcc----------CcHHHHHHHHHHHHHccCCC
Q 006615 537 LFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKE----------GRRKEAAAVEERCEKINDVP 606 (638)
Q Consensus 537 l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~~ 606 (638)
.|+.+.+. .|+.. .....+..+..+|.+. |++++|.+.++++.+..+..
T Consensus 170 ~~~~~l~~--~p~~~-------------------~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 170 TYEAVFDA--YPDTP-------------------WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHH--CTTST-------------------THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHH--CCCCc-------------------hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 99999874 24321 1234555666666655 99999999999999987644
Q ss_pred C
Q 006615 607 S 607 (638)
Q Consensus 607 ~ 607 (638)
|
T Consensus 229 ~ 229 (261)
T 3qky_A 229 P 229 (261)
T ss_dssp T
T ss_pred h
Confidence 4
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.60 E-value=9.6e-07 Score=84.44 Aligned_cols=164 Identities=10% Similarity=-0.005 Sum_probs=107.8
Q ss_pred CchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006615 135 NVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMI 214 (638)
Q Consensus 135 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li 214 (638)
.+...+..+...+.+.|++++|...|++..... +-+...+..+...+.+.|++++|...|++.... .|+........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 344555666677777788888888887777664 345667777777777778888888877777653 34443332222
Q ss_pred -HHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCC
Q 006615 215 -EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFP--GRAMRVALERMQEMGF 291 (638)
Q Consensus 215 -~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~~~~ll~~~~~~g~ 291 (638)
..+.+.++.++|.+.+++..... +.+...+..+...+...|++++|...|.++.+..... ......+...+...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 22556666677777777665532 2356677777777778888888888887777654433 2344567777777777
Q ss_pred hHHHHHHHHHh
Q 006615 292 IQGANEFLREM 302 (638)
Q Consensus 292 ~~~a~~~~~~~ 302 (638)
.++|...+++.
T Consensus 271 ~~~a~~~~r~a 281 (287)
T 3qou_A 271 GDALASXYRRQ 281 (287)
T ss_dssp TCHHHHHHHHH
T ss_pred CCcHHHHHHHH
Confidence 77777777654
No 96
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.60 E-value=1.4e-06 Score=84.31 Aligned_cols=95 Identities=11% Similarity=0.033 Sum_probs=54.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006615 150 SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEV 229 (638)
Q Consensus 150 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~ 229 (638)
.|++++|.+++++..+.. +.. + +...+++++|...|.+. ...|...|++++|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 456667777776665432 110 0 11146666666666654 3455666777777777
Q ss_pred HHhcccC----CCcc-CHhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006615 230 FSALPLM----RIKR-TSKQYLILVEGFVGVERFDEAKSLLNEMR 269 (638)
Q Consensus 230 ~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 269 (638)
|.+..+. |-.+ -..+|+.+...|.+.|++++|+..|++..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al 103 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKAS 103 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 6655431 1011 13456667777777777777777777654
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.56 E-value=1.9e-06 Score=81.11 Aligned_cols=180 Identities=9% Similarity=0.012 Sum_probs=96.6
Q ss_pred HHHHHHcCCChhHHHHHHHHHHcCCCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCchHhHHHHHHHHH
Q 006615 72 VTHALRSAPNADSALSIMEALKSNPNFSHN-QSTLHALATVLAKSQRNHELKTLIGDISSSKF--LNVSVNFMNLMQWYS 148 (638)
Q Consensus 72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~--~~~~~~~~~ll~~~~ 148 (638)
....+.+.|++++|+..|+.+.+..+-.|. ...+..+..++...|++++|...|++..+... +.....+..+..++.
T Consensus 21 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~ 100 (261)
T 3qky_A 21 RAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYY 100 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHH
Confidence 455666777777777777777654222211 34566666667777777777777777665321 112334555666666
Q ss_pred h--------cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 006615 149 T--------SGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220 (638)
Q Consensus 149 ~--------~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 220 (638)
+ .|++++|...|++..... +.+...+..+... ...... -...+..+...|.+.
T Consensus 101 ~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~--------------~~~~~~----~~~~~~~la~~~~~~ 161 (261)
T 3qky_A 101 KLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKI--------------RELRAK----LARKQYEAARLYERR 161 (261)
T ss_dssp HHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHH--------------HHHHHH----HHHHHHHHHHHHHHT
T ss_pred HhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHH--------------HHHHHH----HHHHHHHHHHHHHHc
Confidence 6 677777777777766653 1122222111000 000000 000123445556666
Q ss_pred CCHHHHHHHHHhcccCCCccC----HhHHHHHHHHHHcc----------CCHHHHHHHHHHHHhCC
Q 006615 221 GKLDSALEVFSALPLMRIKRT----SKQYLILVEGFVGV----------ERFDEAKSLLNEMRDDG 272 (638)
Q Consensus 221 g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~g 272 (638)
|++++|...|++..+. .|+ ...+..+..+|... |++++|...|+++.+..
T Consensus 162 g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 162 ELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp TCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 6777776666666542 122 23455555556544 66677777777766543
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.55 E-value=7.5e-07 Score=96.35 Aligned_cols=173 Identities=9% Similarity=-0.032 Sum_probs=142.3
Q ss_pred HcCCChhHHHHHHHHHH--------cCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHH
Q 006615 77 RSAPNADSALSIMEALK--------SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYS 148 (638)
Q Consensus 77 ~~~~~~~~Al~~~~~~~--------~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~ 148 (638)
...|++++|++.|+.+. +.. +.+...+..+..++...|++++|...+++..+.. +.+...|..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHH
Confidence 67899999999999987 332 3345678888899999999999999999988753 346677888999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006615 149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALE 228 (638)
Q Consensus 149 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 228 (638)
+.|++++|...|++..+.+ +-+...|..+..++.+.|++++ .+.|++..+... -+...|..+..++.+.|++++|.+
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999875 4467889999999999999999 999999988532 267889999999999999999999
Q ss_pred HHHhcccCCCccC-HhHHHHHHHHHHccCC
Q 006615 229 VFSALPLMRIKRT-SKQYLILVEGFVGVER 257 (638)
Q Consensus 229 ~~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 257 (638)
.|++..+. .|+ ...|..+..++...++
T Consensus 556 ~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 99998864 454 5677778888877665
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.55 E-value=6.1e-06 Score=75.61 Aligned_cols=173 Identities=11% Similarity=-0.026 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHH
Q 006615 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMR-LP-FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS 484 (638)
Q Consensus 407 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 484 (638)
..+..+...+.+.|++++|...|+++...... |. ...+..+..+|.+.|++++|...|++..+..+..... ..++.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~--~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI--DYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH--HHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH--HHHHH
Confidence 34445566677788888888888887765432 11 3456667777888888888888888877654432221 12333
Q ss_pred HHHHHHH------------------ccCChHHHHHHHHHHHhCCCCcchh-hH-----------------HHHHHHHHcc
Q 006615 485 SLLRTLT------------------KCKRDFDAINVLEEMIFSGIVPDVQ-TF-----------------SGLMYHFALQ 528 (638)
Q Consensus 485 ~li~~~~------------------~~g~~~~A~~l~~~m~~~g~~p~~~-t~-----------------~~li~~~~~~ 528 (638)
.+...+. ..|+.++|.+.|+++.+. .|+.. .+ ..+...|.+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~ 160 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTER 160 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333333 367899999999999875 35432 22 2345577889
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615 529 GDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND 604 (638)
Q Consensus 529 g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 604 (638)
|++++|...|+.+.+. .|+.. .....+..+..++.+.|++++|.+.++.+...++
T Consensus 161 ~~~~~A~~~~~~~l~~--~p~~~-------------------~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 161 GAWVAVVNRVEGMLRD--YPDTQ-------------------ATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp TCHHHHHHHHHHHHHH--STTSH-------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred CcHHHHHHHHHHHHHH--CcCCC-------------------ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 9999999999999874 23311 0124677899999999999999999999888654
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.54 E-value=8.8e-07 Score=77.72 Aligned_cols=155 Identities=11% Similarity=0.001 Sum_probs=67.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHc
Q 006615 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH-LVNL 220 (638)
Q Consensus 142 ~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~-~~~~ 220 (638)
.+...+.+.|++++|...|++..+.+ +.+...+..+...+.+.|++++|...|++..+. .|+...+..+... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhh
Confidence 33444445555555555555444332 223444555555555555555555555544432 1222221111111 1111
Q ss_pred CCHHHHHHHHHhcccCCCcc-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHcCChHHHHH
Q 006615 221 GKLDSALEVFSALPLMRIKR-TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR--AMRVALERMQEMGFIQGANE 297 (638)
Q Consensus 221 g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~~~~ll~~~~~~g~~~~a~~ 297 (638)
+...+|.+.|++..+. .| +...+..+...+...|++++|...|+++.+....+.. ....+...+...|+.++|..
T Consensus 88 ~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 88 AAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred cccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 1222234444444332 22 3444555555555555555555555555544433211 23344455555555555555
Q ss_pred HHHH
Q 006615 298 FLRE 301 (638)
Q Consensus 298 ~~~~ 301 (638)
.+++
T Consensus 166 ~y~~ 169 (176)
T 2r5s_A 166 KYRR 169 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.54 E-value=4.1e-06 Score=75.69 Aligned_cols=130 Identities=11% Similarity=0.096 Sum_probs=93.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHH
Q 006615 141 MNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVN 219 (638)
Q Consensus 141 ~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~ 219 (638)
..+...|.+.|++++|...|++..+.+ +-+...|..+..++...|++++|.+.|++..+. .| +..+|..+...|..
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 347888889999999999999988875 446788888889999999999999999998885 34 57778777777765
Q ss_pred cCC--HHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 006615 220 LGK--LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR 277 (638)
Q Consensus 220 ~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 277 (638)
.|+ .+.+...+..... ..|....+..+..++...|++++|...|++..+. .|+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~ 190 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPST 190 (208)
T ss_dssp HHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCH
T ss_pred HhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCH
Confidence 553 4455666665542 1223333444555666788999999999988764 4554
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.53 E-value=3.3e-06 Score=76.29 Aligned_cols=170 Identities=9% Similarity=-0.026 Sum_probs=125.6
Q ss_pred HHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHH----------------HHHHHHhcCChHHHHHHHHHHHhCCCCCc
Q 006615 73 THALRSAPNADSALSIMEALKSNPNFSHNQSTLHA----------------LATVLAKSQRNHELKTLIGDISSSKFLNV 136 (638)
Q Consensus 73 ~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~~~~~~a~~l~~~~~~~~~~~~ 136 (638)
...+...|++++|+..|+.+.+.. +-+...+.. +..++.+.|++++|...+++..+.. +.+
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~ 87 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNN 87 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCC
Confidence 456678999999999999988643 113335666 8888899999999999999988754 456
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006615 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK--NFEAVETFRQVIDEGAIPNSRTYTVMI 214 (638)
Q Consensus 137 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ty~~li 214 (638)
...+..+...|...|++++|...|++..+.+ +.+..+|..+...|...|. .+.+...+..... ..|....+...-
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g 164 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHH
Confidence 7788999999999999999999999999875 4568889999888876554 3455566655532 222333344455
Q ss_pred HHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHH
Q 006615 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250 (638)
Q Consensus 215 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 250 (638)
.++...|++++|...|++..+. .|+......+.+
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~~ 198 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 5667789999999999998864 677665554443
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.50 E-value=8.3e-06 Score=74.71 Aligned_cols=56 Identities=11% Similarity=0.061 Sum_probs=28.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCChHHHHHHHHHhC
Q 006615 248 LVEGFVGVERFDEAKSLLNEMRDDGKFPG---RAMRVALERMQEMGFIQGANEFLREML 303 (638)
Q Consensus 248 li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~~~~ll~~~~~~g~~~~a~~~~~~~~ 303 (638)
+...|.+.|++++|...|+++.+...... ...+.+..++.+.|+.++|.+.++.+.
T Consensus 153 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 153 VAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 34455555666666666655554322111 122344555555666666665555543
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.50 E-value=7.9e-06 Score=74.04 Aligned_cols=178 Identities=11% Similarity=-0.024 Sum_probs=125.7
Q ss_pred hHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC----CHHHHHH
Q 006615 83 DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG----DLELVLS 158 (638)
Q Consensus 83 ~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g----~~~~A~~ 158 (638)
.+|++.|+...+.+ +...+..+-..+...+++++|..+|++..+.| +...+..|-..|.. + +.++|..
T Consensus 3 ~eA~~~~~~aa~~g----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp -CTTHHHHHHHHTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred chHHHHHHHHHHCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 34667777776552 45567777777777888888888888877754 45556667777776 6 7888888
Q ss_pred HHHHHHhcCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH----cCCHHHHHHH
Q 006615 159 TWNEYRQRAKLLSTESYNIVMSVYAK----TGKNFEAVETFRQVIDEGAI-PNSRTYTVMIEHLVN----LGKLDSALEV 229 (638)
Q Consensus 159 l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~ty~~li~~~~~----~g~~~~A~~~ 229 (638)
.|++..+.| +..++..|-..|.. .+++++|.++|++..+.|.. -+...+..|-..|.. .++.++|.+.
T Consensus 75 ~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 75 LAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 888887765 46677777777776 77888888888888775431 025677777777777 7788888888
Q ss_pred HHhcccCCCccCHhHHHHHHHHHHcc-C-----CHHHHHHHHHHHHhCCC
Q 006615 230 FSALPLMRIKRTSKQYLILVEGFVGV-E-----RFDEAKSLLNEMRDDGK 273 (638)
Q Consensus 230 ~~~m~~~g~~p~~~~~~~li~~~~~~-g-----~~~~A~~l~~~m~~~g~ 273 (638)
|++..+. ..+...+..|-..|... | ++++|...|++..+.|.
T Consensus 152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8887664 13444566666666543 2 78888888888776654
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.50 E-value=1.7e-06 Score=75.79 Aligned_cols=156 Identities=12% Similarity=0.097 Sum_probs=69.2
Q ss_pred HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHH-HHhc
Q 006615 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQW-YSTS 150 (638)
Q Consensus 72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~-~~~~ 150 (638)
....+...|++++|+..|+.+.+.. +.+...+..+..++...|++++|...++...+.. |+...+..+... +...
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence 3444555566666666665544321 1223345555555555566666665555554332 122211111111 1111
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 006615 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEV 229 (638)
Q Consensus 151 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~ 229 (638)
+....|...|++..+.+ +.+...+..+..++.+.|++++|...|++..+....+ +...+..+...+...|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 12223444454444432 2234445555555555555555555555554432211 133444444555555555555544
Q ss_pred HHh
Q 006615 230 FSA 232 (638)
Q Consensus 230 ~~~ 232 (638)
|++
T Consensus 167 y~~ 169 (176)
T 2r5s_A 167 YRR 169 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.49 E-value=2.9e-06 Score=89.98 Aligned_cols=153 Identities=8% Similarity=-0.073 Sum_probs=89.3
Q ss_pred CCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHH
Q 006615 79 APNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLS 158 (638)
Q Consensus 79 ~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 158 (638)
.|++++|+..|+.+.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...|.+.|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 356777777777766442 2234566667777777777777777777776643 3345566667777777777777777
Q ss_pred HHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHhccc
Q 006615 159 TWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL---GKLDSALEVFSALPL 235 (638)
Q Consensus 159 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~---g~~~~A~~~~~~m~~ 235 (638)
.|++..+.+ +.+...|..+..+|.+.|++++|.+.|++..+... -+...+..+...+... |+.++|.+.+++..+
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 777776654 33466677777777777777777777777766421 2456666666777777 777777777776655
Q ss_pred C
Q 006615 236 M 236 (638)
Q Consensus 236 ~ 236 (638)
.
T Consensus 157 ~ 157 (568)
T 2vsy_A 157 Q 157 (568)
T ss_dssp H
T ss_pred c
Confidence 3
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.48 E-value=2.8e-06 Score=81.20 Aligned_cols=165 Identities=12% Similarity=0.036 Sum_probs=129.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHH-
Q 006615 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM- 179 (638)
Q Consensus 101 ~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li- 179 (638)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|...+++..... |+........
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 34467777888889999999999999988753 3456678889999999999999999999887654 5544433333
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCc-cCHhHHHHHHHHHHccCCH
Q 006615 180 SVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIK-RTSKQYLILVEGFVGVERF 258 (638)
Q Consensus 180 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~ 258 (638)
..+.+.++.++|.+.|++..+... .+...+..+...+...|++++|.+.|+++.+..-. .+...+..+...|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 336677888889999999888532 36788888999999999999999999998764211 2266889999999999999
Q ss_pred HHHHHHHHHHH
Q 006615 259 DEAKSLLNEMR 269 (638)
Q Consensus 259 ~~A~~l~~~m~ 269 (638)
++|...|++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 99999888764
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.48 E-value=8e-06 Score=78.89 Aligned_cols=125 Identities=11% Similarity=0.071 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----C-CHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCc-chhHH
Q 006615 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMR----L-PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS-KFKLM 480 (638)
Q Consensus 407 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~----~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~ 480 (638)
.++..+...|.. |++++|.+.|++....... . ...++..+...|.+.|++++|...|++..+...... .+...
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 456667777777 8888888888876542111 0 135677778888889999999988888765432111 22223
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcch------hhHHHHHHHHHccCCHHHHHH
Q 006615 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDV------QTFSGLMYHFALQGDEKIVQK 536 (638)
Q Consensus 481 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~li~~~~~~g~~~~a~~ 536 (638)
..+..+...+...|++++|...|++.. . .|+. .....++.++ ..|+.+.+.+
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 466777777888899999999998887 3 3432 2344555555 4567665555
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.47 E-value=3.7e-06 Score=89.16 Aligned_cols=156 Identities=10% Similarity=-0.031 Sum_probs=104.4
Q ss_pred cCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHH
Q 006615 115 SQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVET 194 (638)
Q Consensus 115 ~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 194 (638)
.|++++|...+++..+.. +.+...+..+...|.+.|++++|.+.|++..+.+ +.+...|..+...|.+.|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 366777888887776542 3345667778888888888888888888887764 44577788888888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHcc---CCHHHHHHHHHHHHhC
Q 006615 195 FRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV---ERFDEAKSLLNEMRDD 271 (638)
Q Consensus 195 ~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~ 271 (638)
|++..+... -+...+..+...|.+.|++++|.+.|++..+.. ..+...+..+...+... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 888877532 256778888888888888888888888876642 23566777788888888 8888888888888765
Q ss_pred CCC
Q 006615 272 GKF 274 (638)
Q Consensus 272 g~~ 274 (638)
+..
T Consensus 158 ~p~ 160 (568)
T 2vsy_A 158 GVG 160 (568)
T ss_dssp TCC
T ss_pred CCc
Confidence 543
No 110
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.43 E-value=0.00015 Score=74.59 Aligned_cols=125 Identities=10% Similarity=0.076 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcc-cCCHHHHHHHHHhchhccCCCcchhHHHHHHH
Q 006615 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGI-SKKADAALKAFHDDRTLCGPISKFKLMLLYSS 485 (638)
Q Consensus 407 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (638)
..|...+....+.++.+.|..+|+..... ..+...|......-.. .++.+.|..+|+...+..+. .| ..|..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~---~~~~~ 359 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIELGNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--ST---LLKEE 359 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CH---HHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CH---HHHHH
Confidence 45777777777788899999999998222 2344444332222222 33699999999998776432 23 34666
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615 486 LLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543 (638)
Q Consensus 486 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~ 543 (638)
.++...+.|+.+.|..+|++.. -....|...+.-=...|+.+.+..+++++..
T Consensus 360 yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 360 FFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7787888999999999999973 2566777777777778999999998887764
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.41 E-value=1.2e-06 Score=74.43 Aligned_cols=142 Identities=11% Similarity=0.017 Sum_probs=95.4
Q ss_pred HHHHhccCChhHHHHHHHHHhcCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccC
Q 006615 377 CKVLRHFKSPETAWHFFCWVAYQPGYTHD-VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK 455 (638)
Q Consensus 377 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g 455 (638)
+.++...+++++|+..+...... .|+ ...+..+...|.+.|++++|.+.|++..+.... +..+|..+..+|.+.|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~---~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS---PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS---HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhccc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 44555567788888888776422 222 334566777888888888888888888876543 6677888888888888
Q ss_pred CHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHH-HHHHHhCCCCc-chhhHHHHHHHHHccC
Q 006615 456 KADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINV-LEEMIFSGIVP-DVQTFSGLMYHFALQG 529 (638)
Q Consensus 456 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l-~~~m~~~g~~p-~~~t~~~li~~~~~~g 529 (638)
++++|...|+...+. .|+...+|..+...|.+.|+.++|.+. +++..+. .| +...|......+...|
T Consensus 80 ~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 80 NTDKAVECYRRSVEL-----NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp CHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 888888888887765 444456777888888888887766554 4666653 34 3445555555555554
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.41 E-value=2.8e-05 Score=70.34 Aligned_cols=177 Identities=11% Similarity=-0.045 Sum_probs=135.4
Q ss_pred HHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccC----CHHHHHHH
Q 006615 388 TAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISK----KADAALKA 463 (638)
Q Consensus 388 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~ 463 (638)
+|.+.|...... -+...+..+-..|...+++++|.+.|++..+.| +...+..+-..|.. + +.++|..+
T Consensus 4 eA~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 455666666543 277888888889999999999999999999887 67778888888888 6 89999999
Q ss_pred HHhchhccCCCcchhHHHHHHHHHHHHHc----cCChHHHHHHHHHHHhCCCC-cchhhHHHHHHHHHc----cCCHHHH
Q 006615 464 FHDDRTLCGPISKFKLMLLYSSLLRTLTK----CKRDFDAINVLEEMIFSGIV-PDVQTFSGLMYHFAL----QGDEKIV 534 (638)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~-p~~~t~~~li~~~~~----~g~~~~a 534 (638)
|+...+. +.+.++..|...|.. .++.++|.+.|++..+.|.. .+...+..|-..|.. .+++++|
T Consensus 76 ~~~A~~~-------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 76 AEKAVEA-------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHHHHHT-------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHHHHHC-------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9997542 224678888888887 88999999999999987632 126777888888887 7899999
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcc------CcHHHHHHHHHHHHHccC
Q 006615 535 QKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKE------GRRKEAAAVEERCEKIND 604 (638)
Q Consensus 535 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~------g~~~~A~~~~~~~~~~~~ 604 (638)
.+.|++..+.+ . +...+..|...|.+. .++++|.+.+++..+.|.
T Consensus 149 ~~~~~~A~~~~--~-----------------------~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 149 SEYFKGSSSLS--R-----------------------TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHTS--C-----------------------TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcC--C-----------------------CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99999998751 1 222344455555432 278888888888887764
No 113
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.41 E-value=1.5e-06 Score=73.79 Aligned_cols=111 Identities=7% Similarity=0.023 Sum_probs=50.0
Q ss_pred cCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHH
Q 006615 78 SAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVL 157 (638)
Q Consensus 78 ~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 157 (638)
..|++++|+..++.....+ +-+...+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|.
T Consensus 9 ~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHH
Confidence 3344555555555444321 0111223334444455555555555555544432 223344444555555555555555
Q ss_pred HHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHH
Q 006615 158 STWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV 192 (638)
Q Consensus 158 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 192 (638)
..|++..+.+ +-+..+|..+...|.+.|++++|.
T Consensus 86 ~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa 119 (150)
T 4ga2_A 86 ECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRA 119 (150)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHH
Confidence 5555544433 223444444555555555544433
No 114
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.40 E-value=5.2e-05 Score=72.55 Aligned_cols=176 Identities=6% Similarity=-0.067 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcch-hHH
Q 006615 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPF-----STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKF-KLM 480 (638)
Q Consensus 407 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~ 480 (638)
..+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...++...........+ ...
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34566788889999999999999988765433211 223445566788999999999999876543222222 224
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHh---C-CCCc--chhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 006615 481 LLYSSLLRTLTKCKRDFDAINVLEEMIF---S-GIVP--DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK 554 (638)
Q Consensus 481 ~~~~~li~~~~~~g~~~~A~~l~~~m~~---~-g~~p--~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~ 554 (638)
.+|+.+...|...|++++|...|++..+ . +-.+ ...+|+.+...|...|++++|.+.+++..+..-
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~-------- 227 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC-------- 227 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH--------
Confidence 5899999999999999999999999873 1 1112 125888999999999999999999998875320
Q ss_pred HHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhccCcHHHH-HHHHHHHHH
Q 006615 555 VLIQAYCKYLSNSNLMP-DAATKELLKKSLWKEGRRKEA-AAVEERCEK 601 (638)
Q Consensus 555 ~li~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A-~~~~~~~~~ 601 (638)
+.+... -..+|..+..+|.+.|++++| ...+++..+
T Consensus 228 -----------~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 228 -----------RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp -----------HTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -----------hcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 011111 255778899999999999999 777877654
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.39 E-value=9.3e-05 Score=70.77 Aligned_cols=221 Identities=8% Similarity=-0.026 Sum_probs=149.9
Q ss_pred CCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHH---HHHHHHHHHHhcCChHHHHHHHHHH
Q 006615 356 WSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVY---ALEKMLTILARHGHVELVDRLIAKL 432 (638)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~l~~~m 432 (638)
+.+..++.++.+...++...+.......+-.-. .++.. .. ..+.. .+...+..+...|++++|..++++.
T Consensus 29 ~s~~~~s~~e~g~~~~~~~~l~~i~~~l~~~~~--~~~~~----~~-~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~ 101 (293)
T 3u3w_A 29 CHQSEVSRIESGAVYPSMDILQGIAAKLQIPII--HFYEV----LI-YSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNE 101 (293)
T ss_dssp SCHHHHHHHHTTSCCCCHHHHHHHHHHHTCCTH--HHHHT----TT-SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHH--HHhCC----CC-CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 566666666666655555555444444332211 11211 11 11222 3344577889999999999999998
Q ss_pred HHcCC-CCCH----HHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcch-hHHHHHHHHHHHHHccCChHHHHHHHHHH
Q 006615 433 RSDGM-RLPF----STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKF-KLMLLYSSLLRTLTKCKRDFDAINVLEEM 506 (638)
Q Consensus 433 ~~~g~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m 506 (638)
..... .|+. ..+..+...+...+++++|...|+...........+ ....+|+.+...|...|++++|.+.|+++
T Consensus 102 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 181 (293)
T 3u3w_A 102 LKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQI 181 (293)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 86432 2222 133456777888899999999999987643222221 22357999999999999999999999998
Q ss_pred Hh----C-CCCcc-hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCC-HHHHHHH
Q 006615 507 IF----S-GIVPD-VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPD-AATKELL 579 (638)
Q Consensus 507 ~~----~-g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~-~~~~~~l 579 (638)
.+ . +..+. ..+|..+...|.+.|++++|.+.+++..+.. .+.+..+. ..+|..+
T Consensus 182 l~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~-------------------~~~~~~~~~~~~~~~l 242 (293)
T 3u3w_A 182 LKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS-------------------CRINSMALIGQLYYQR 242 (293)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------HHTTBCTTHHHHHHHH
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------------------HHcCcHHHHHHHHHHH
Confidence 74 1 22333 3478899999999999999999999877531 11122233 5678889
Q ss_pred HHHHhccC-cHHHHHHHHHHHHHc
Q 006615 580 KKSLWKEG-RRKEAAAVEERCEKI 602 (638)
Q Consensus 580 i~~~~~~g-~~~~A~~~~~~~~~~ 602 (638)
..++.+.| ++++|.+.+++..+.
T Consensus 243 g~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 243 GECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999 569999999988764
No 116
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.38 E-value=0.00038 Score=66.22 Aligned_cols=149 Identities=6% Similarity=-0.017 Sum_probs=74.4
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH----Hhc---CChHHHHHHHHHHHHcCCCCCHHHH
Q 006615 140 FMNLMQWYSTSG--DLELVLSTWNEYRQRAKLLSTESYNIVMSVY----AKT---GKNFEAVETFRQVIDEGAIPNSRTY 210 (638)
Q Consensus 140 ~~~ll~~~~~~g--~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~----~~~---g~~~~A~~~~~~m~~~g~~p~~~ty 210 (638)
|+.--..+...| ++++++.+++.+...+ +-+..+|+.--..+ ... +++++++++++.+.+...+ |-.+|
T Consensus 70 Wn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW 147 (306)
T 3dra_A 70 WIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVW 147 (306)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 343334444444 5555555555555543 22334444433333 333 4555555555555554222 44455
Q ss_pred HHHHHHHHHcCCHH--HHHHHHHhcccCCCccCHhHHHHHHHHHHccCC------HHHHHHHHHHHHhCCCCCCHHHHHH
Q 006615 211 TVMIEHLVNLGKLD--SALEVFSALPLMRIKRTSKQYLILVEGFVGVER------FDEAKSLLNEMRDDGKFPGRAMRVA 282 (638)
Q Consensus 211 ~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~------~~~A~~l~~~m~~~g~~p~~~~~~l 282 (638)
+--.-...+.|.++ ++.+.++++.+.. ..|...|+--...+.+.+. ++++++.++++....+.-...++..
T Consensus 148 ~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~ 226 (306)
T 3dra_A 148 SYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYL 226 (306)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHH
Confidence 44444444455555 5555555555433 2345555554444444444 6777777777776655544455444
Q ss_pred HHHHHHcCC
Q 006615 283 LERMQEMGF 291 (638)
Q Consensus 283 l~~~~~~g~ 291 (638)
-..+.+.|+
T Consensus 227 ~~ll~~~~~ 235 (306)
T 3dra_A 227 LGIHERFDR 235 (306)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHhcCC
Confidence 444444444
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.36 E-value=2.1e-05 Score=71.06 Aligned_cols=129 Identities=12% Similarity=0.033 Sum_probs=86.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 006615 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219 (638)
Q Consensus 140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~ 219 (638)
+..+...+...|++++|...|++.. .|+..+|..+...|.+.|++++|.+.|++..+.. +.+...|..+...|.+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3445556666777777777776552 4456677777777777777777777777766642 2255666667777777
Q ss_pred cCCHHHHHHHHHhcccCC--------------Ccc-CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006615 220 LGKLDSALEVFSALPLMR--------------IKR-TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273 (638)
Q Consensus 220 ~g~~~~A~~~~~~m~~~g--------------~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 273 (638)
.|++++|.+.|++..+.. ..| +...|..+..+|.+.|++++|.+.|++..+...
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 777777777776665421 112 235677788888888888888888888876543
No 118
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.36 E-value=0.00011 Score=70.06 Aligned_cols=225 Identities=9% Similarity=-0.032 Sum_probs=163.4
Q ss_pred HHHHHcCCC-hhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCchHhHHHHHHHH--
Q 006615 73 THALRSAPN-ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQ--RNHELKTLIGDISSSKFLNVSVNFMNLMQWY-- 147 (638)
Q Consensus 73 ~~~l~~~~~-~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~-- 147 (638)
+.++.+.|. .++|+.+++.+.... +-....|+.--.++...+ +++++..+++.+.... +.+..+|+.--..+
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHH
Confidence 444455555 468999999988653 223345777777777778 9999999999988754 33444566544444
Q ss_pred --Hhc---CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 006615 148 --STS---GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF--EAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220 (638)
Q Consensus 148 --~~~---g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 220 (638)
... +++++++.+++.+.+.+ +-|..+|+.-.-.+.+.|.++ ++++.++++.+.... |-..|+--.....+.
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSK 193 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSS
T ss_pred HHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 445 78999999999999876 557888988888888888888 999999999987544 777887666666666
Q ss_pred CC------HHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHH-HHHHHHHHHhCC---CCCCHHHHHHHHHHHHcC
Q 006615 221 GK------LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE-AKSLLNEMRDDG---KFPGRAMRVALERMQEMG 290 (638)
Q Consensus 221 g~------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g---~~p~~~~~~ll~~~~~~g 290 (638)
|. ++++.+.++++.... .-|...|+-+-..+.+.|+..+ +..+..+....+ +........+...+.+.|
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred cccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence 65 888888888877654 3478889888888888887544 555666665433 222223346667888999
Q ss_pred ChHHHHHHHHHhC
Q 006615 291 FIQGANEFLREML 303 (638)
Q Consensus 291 ~~~~a~~~~~~~~ 303 (638)
+.++|.+.++.+.
T Consensus 273 ~~~~A~~~~~~l~ 285 (306)
T 3dra_A 273 KYNESRTVYDLLK 285 (306)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999875
No 119
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.30 E-value=6.9e-06 Score=73.60 Aligned_cols=167 Identities=12% Similarity=-0.083 Sum_probs=106.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCC-cchhHHHHHHHHHHHHHccCC
Q 006615 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI-SKFKLMLLYSSLLRTLTKCKR 495 (638)
Q Consensus 417 ~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~ 495 (638)
...|++++|.++++.+.. ........+..+...|...|++++|...+++..+..... ..+....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 346677777774444432 222244566677777777778777777777765432211 234445678888888888999
Q ss_pred hHHHHHHHHHHHhC----CCCc--chhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHHHhhhCC
Q 006615 496 DFDAINVLEEMIFS----GIVP--DVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE-PDAYMFKVLIQAYCKYLSNSN 568 (638)
Q Consensus 496 ~~~A~~l~~~m~~~----g~~p--~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~-p~~~~~~~li~~~~~~m~~~g 568 (638)
+++|.+.+++..+. +-.| ....+..+...+...|++++|.+.+++..+..-. .+.
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------------ 143 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQ------------------ 143 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH------------------
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccch------------------
Confidence 99998888876552 2122 2345777778888889999999988877642100 010
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcc
Q 006615 569 LMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIN 603 (638)
Q Consensus 569 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 603 (638)
..-..++..+...+...|++++|.+.+++..+..
T Consensus 144 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 144 -VAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 0112345777888888899999988888877653
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.30 E-value=2.2e-05 Score=67.56 Aligned_cols=127 Identities=13% Similarity=0.083 Sum_probs=76.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006615 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218 (638)
Q Consensus 139 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~ 218 (638)
.+..+...+...|+++.|...|++..... +.+..+|..+...+...|++++|.+.|++..+.. +.+..++..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 35556666667777777777777766653 3356666667777777777777777777766642 124556666666666
Q ss_pred HcCCHHHHHHHHHhcccCCCccCHhHHHH--HHHHHHccCCHHHHHHHHHHH
Q 006615 219 NLGKLDSALEVFSALPLMRIKRTSKQYLI--LVEGFVGVERFDEAKSLLNEM 268 (638)
Q Consensus 219 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~--li~~~~~~g~~~~A~~l~~~m 268 (638)
+.|++++|.+.|++..+.. +.+...+.. +...+.+.|++++|...+.+.
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 7777777777776665432 113333322 223355566666666666554
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.30 E-value=5.7e-05 Score=68.16 Aligned_cols=127 Identities=11% Similarity=-0.006 Sum_probs=94.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHh
Q 006615 105 LHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK 184 (638)
Q Consensus 105 ~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 184 (638)
+..+...+...|++++|...+++.. .|+...+..+...|.+.|++++|...|++....+ +.+...|..+..+|.+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4445556667788888888877663 3566777788888888888888888888877764 4457778888888888
Q ss_pred cCChHHHHHHHHHHHHcCCC--------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccC
Q 006615 185 TGKNFEAVETFRQVIDEGAI--------------P-NSRTYTVMIEHLVNLGKLDSALEVFSALPLM 236 (638)
Q Consensus 185 ~g~~~~A~~~~~~m~~~g~~--------------p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~ 236 (638)
.|++++|.+.|++..+.... | ....+..+...|.+.|++++|.+.|++..+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 88888888888888774211 1 1267777888888889999998888887764
No 122
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.29 E-value=2.1e-05 Score=63.65 Aligned_cols=94 Identities=18% Similarity=0.270 Sum_probs=45.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006615 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218 (638)
Q Consensus 139 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~ 218 (638)
.+..+...+.+.|++++|...|+++.... +.+..++..+...+.+.|++++|...|+++.+.. +.+..++..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 34444455555555555555555554432 2234445555555555555555555555554432 113444444444455
Q ss_pred HcCCHHHHHHHHHhcc
Q 006615 219 NLGKLDSALEVFSALP 234 (638)
Q Consensus 219 ~~g~~~~A~~~~~~m~ 234 (638)
..|++++|.+.|+++.
T Consensus 89 ~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 89 KQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHH
Confidence 5555555555554443
No 123
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.29 E-value=1.6e-05 Score=76.09 Aligned_cols=169 Identities=11% Similarity=0.052 Sum_probs=111.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCch----HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----
Q 006615 102 QSTLHALATVLAKSQRNHELKTLIGDISSSKF-LNVS----VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKL-LS---- 171 (638)
Q Consensus 102 ~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~-~~~~----~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~-p~---- 171 (638)
...+...+..+...|++++|..+++...+... .++. ..+..+...+...|++++|...|++....... ++
T Consensus 75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 154 (293)
T 3u3w_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence 44555556666677777777777777665321 2221 12334666666777888888888887763221 22
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhccc----CCCccC
Q 006615 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDE-----GAIPN-SRTYTVMIEHLVNLGKLDSALEVFSALPL----MRIKRT 241 (638)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~ 241 (638)
..+|+.+...|...|++++|.+.|++..+. +..+. ..+|..+...|.+.|++++|.+.+++..+ .+..+.
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~ 234 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 236788888888888888888888887741 12222 34677788888888888888888877653 221222
Q ss_pred -HhHHHHHHHHHHccC-CHHHHHHHHHHHHh
Q 006615 242 -SKQYLILVEGFVGVE-RFDEAKSLLNEMRD 270 (638)
Q Consensus 242 -~~~~~~li~~~~~~g-~~~~A~~l~~~m~~ 270 (638)
..+|..+..+|.+.| ++++|.+.|++...
T Consensus 235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 567888888888888 46889888888743
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.29 E-value=1.2e-05 Score=65.67 Aligned_cols=104 Identities=8% Similarity=-0.137 Sum_probs=82.9
Q ss_pred chhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 006615 476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV 555 (638)
Q Consensus 476 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~ 555 (638)
+|+....|......|.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|++.+++.++.+ |+
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~------ 79 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SK------ 79 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT------
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hh------
Confidence 56666788888888888999999999998887753 2356778888888888999999999888887642 22
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615 556 LIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND 604 (638)
Q Consensus 556 li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 604 (638)
+...|..+..++...|++++|.+.+++..+.++
T Consensus 80 ----------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 80 ----------------FIKGYIRKAACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ----------------hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 466778888888888999999999998888765
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.24 E-value=2.6e-05 Score=63.06 Aligned_cols=100 Identities=16% Similarity=0.245 Sum_probs=86.6
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHH
Q 006615 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251 (638)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 251 (638)
..+|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+.+.|++++|...|+++.+.. ..+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5678889999999999999999999998863 2367888999999999999999999999987643 3467788999999
Q ss_pred HHccCCHHHHHHHHHHHHhCCC
Q 006615 252 FVGVERFDEAKSLLNEMRDDGK 273 (638)
Q Consensus 252 ~~~~g~~~~A~~l~~~m~~~g~ 273 (638)
+...|++++|...|+++.+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhcCHHHHHHHHHHHHHhCC
Confidence 9999999999999999977543
No 126
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.22 E-value=1.4e-05 Score=71.63 Aligned_cols=155 Identities=12% Similarity=0.010 Sum_probs=90.5
Q ss_pred hcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CCCHHhHHHHHHHHHhcCCh
Q 006615 114 KSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQR----AK-LLSTESYNIVMSVYAKTGKN 188 (638)
Q Consensus 114 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~ 188 (638)
..|++++|.++++.+... .......+..+...+...|++++|...+++.... +. .....+++.+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644433321 1234455666667777777777777777665541 11 11244566666777777777
Q ss_pred HHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHhcccC----CCc-cCHhHHHHHHHHHHccCC
Q 006615 189 FEAVETFRQVIDE----GAIP--NSRTYTVMIEHLVNLGKLDSALEVFSALPLM----RIK-RTSKQYLILVEGFVGVER 257 (638)
Q Consensus 189 ~~A~~~~~~m~~~----g~~p--~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~ 257 (638)
++|.+.+++..+. +-.| ...++..+...+...|++++|.+.+++.... +-. .-..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777766542 1111 1344566666777777777777777765431 111 112345667777888888
Q ss_pred HHHHHHHHHHHH
Q 006615 258 FDEAKSLLNEMR 269 (638)
Q Consensus 258 ~~~A~~l~~~m~ 269 (638)
+++|.+.+++..
T Consensus 163 ~~~A~~~~~~al 174 (203)
T 3gw4_A 163 LLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877763
No 127
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.22 E-value=1.3e-05 Score=67.76 Aligned_cols=104 Identities=11% Similarity=-0.025 Sum_probs=70.0
Q ss_pred chhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 006615 476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV 555 (638)
Q Consensus 476 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~ 555 (638)
.|+....+..+...+.+.|++++|.+.|++..+.. +-+...|..+-.+|...|++++|.+.|++..+. .|+
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~------ 102 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKN------ 102 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSS------
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCC------
Confidence 45555666777777777777777777777776642 124556667777777777777777777777663 222
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615 556 LIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND 604 (638)
Q Consensus 556 li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 604 (638)
+...|..+..+|.+.|++++|.+.|++..+..+
T Consensus 103 ----------------~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 103 ----------------DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp ----------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ----------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 345566677777777777777777777777654
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.20 E-value=8.6e-05 Score=71.02 Aligned_cols=160 Identities=11% Similarity=0.075 Sum_probs=68.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCc-h----HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCC--HHhHHH
Q 006615 108 LATVLAKSQRNHELKTLIGDISSSKFLNV-S----VNFMNLMQWYSTSGDLELVLSTWNEYRQRAK---LLS--TESYNI 177 (638)
Q Consensus 108 li~~~~~~~~~~~a~~l~~~~~~~~~~~~-~----~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~---~p~--~~~~~~ 177 (638)
.+..+...|++++|...+....+...... . ..+..+...+...|++++|...+++...... .+. ..+|+.
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34444455555555555554443221110 0 1122233444445555555555555443210 011 234555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHhcccCC----Ccc-CHhHHH
Q 006615 178 VMSVYAKTGKNFEAVETFRQVIDE-GAIPN-----SRTYTVMIEHLVNLGKLDSALEVFSALPLMR----IKR-TSKQYL 246 (638)
Q Consensus 178 li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-----~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~~~~~ 246 (638)
+...|...|++++|.+.|++..+. ...|+ ..+|..+...|.+.|++++|.+.+++..+.. ... -..+|.
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~ 240 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 555555555555555555554421 00111 1344455555555555555555555433210 000 033445
Q ss_pred HHHHHHHccCCHHHH-HHHHHH
Q 006615 247 ILVEGFVGVERFDEA-KSLLNE 267 (638)
Q Consensus 247 ~li~~~~~~g~~~~A-~~l~~~ 267 (638)
.+...|.+.|++++| ...+++
T Consensus 241 ~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 241 QRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHH
Confidence 555555555555555 444443
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.19 E-value=3.7e-05 Score=62.80 Aligned_cols=116 Identities=13% Similarity=0.035 Sum_probs=59.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006615 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218 (638)
Q Consensus 139 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~ 218 (638)
.+..+...+...|++++|...|++..... +.+...|..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 34445555555566666666665555442 2345555555555555666666666665555532 113445555555555
Q ss_pred HcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCC
Q 006615 219 NLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVER 257 (638)
Q Consensus 219 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 257 (638)
+.|++++|.+.|++..+.. +.+...+..+..++.+.|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 5555555555555544421 1133444444444444443
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.18 E-value=3.9e-05 Score=62.95 Aligned_cols=95 Identities=16% Similarity=0.132 Sum_probs=47.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006615 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHL 217 (638)
Q Consensus 138 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~ 217 (638)
..+..+...+.+.|++++|...|++..... +.+...|..+...+...|++++|.+.|++..+... .+...+..+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHHH
Confidence 344445555555555555555555554432 22344555555555555555555555555554321 1344455555555
Q ss_pred HHcCCHHHHHHHHHhcc
Q 006615 218 VNLGKLDSALEVFSALP 234 (638)
Q Consensus 218 ~~~g~~~~A~~~~~~m~ 234 (638)
.+.|++++|.+.|++..
T Consensus 95 ~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 55555555555555544
No 131
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.17 E-value=3.3e-05 Score=71.87 Aligned_cols=189 Identities=7% Similarity=-0.056 Sum_probs=128.8
Q ss_pred cCCChhHHHHHHHHHHcCCCCCCChhHHHHH-------HHHHHhcCChHHHHHHHHHHHhCCCCCc--------------
Q 006615 78 SAPNADSALSIMEALKSNPNFSHNQSTLHAL-------ATVLAKSQRNHELKTLIGDISSSKFLNV-------------- 136 (638)
Q Consensus 78 ~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~l~~~~~~~~~~~~-------------- 136 (638)
..+++..|++.|..+....+-.+| .|..+ ...+.+.++..++...+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~D--aw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACD--AWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhChhhhH--HHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence 579999999999999865422233 45544 3444444434444333333222 1221
Q ss_pred --------hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--
Q 006615 137 --------SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN-- 206 (638)
Q Consensus 137 --------~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-- 206 (638)
....-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. .|.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 1223456778889999999999999887755 544366666667889999999999998655431 111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccC--HhHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006615 207 SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT--SKQYLILVEGFVGVERFDEAKSLLNEMRDDGK 273 (638)
Q Consensus 207 ~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 273 (638)
...+..+-.++.+.|++++|.+.|++.......|. .........++.+.|+.++|..+|+++.....
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 23677778889999999999999998875333253 33566677888899999999999999977543
No 132
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.17 E-value=5.1e-05 Score=61.93 Aligned_cols=94 Identities=16% Similarity=0.099 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 006615 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219 (638)
Q Consensus 140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~ 219 (638)
+..+...|.+.|++++|+..|++..+.+ +.+..+|..+..+|.+.|++++|++.|++..+... .+...|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHH
Confidence 4445555666666666666666655543 33455566666666666666666666666555321 135555555556666
Q ss_pred cCCHHHHHHHHHhccc
Q 006615 220 LGKLDSALEVFSALPL 235 (638)
Q Consensus 220 ~g~~~~A~~~~~~m~~ 235 (638)
.|++++|.+.|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6666666666655544
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.16 E-value=1.6e-05 Score=67.16 Aligned_cols=95 Identities=9% Similarity=0.019 Sum_probs=54.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006615 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218 (638)
Q Consensus 139 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~ 218 (638)
.+..+...+.+.|++++|...|++....+ +.+...|..+..+|.+.|++++|.+.|++..+.... +...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence 44455555666666666666666665553 334555666666666666666666666666553211 3455555555666
Q ss_pred HcCCHHHHHHHHHhccc
Q 006615 219 NLGKLDSALEVFSALPL 235 (638)
Q Consensus 219 ~~g~~~~A~~~~~~m~~ 235 (638)
+.|++++|.+.|++..+
T Consensus 116 ~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666655554
No 134
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.16 E-value=8.1e-05 Score=63.88 Aligned_cols=127 Identities=10% Similarity=0.015 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHH
Q 006615 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYA 183 (638)
Q Consensus 104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~ 183 (638)
.+..+...+...|+++.|...+++..+.. +.+...+..+...+...|++++|...|++..... +.+...|..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 45556666677788888888887776542 3345667777788888888888888888877764 445677778888888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHhc
Q 006615 184 KTGKNFEAVETFRQVIDEGAIPNSRTYTV--MIEHLVNLGKLDSALEVFSAL 233 (638)
Q Consensus 184 ~~g~~~~A~~~~~~m~~~g~~p~~~ty~~--li~~~~~~g~~~~A~~~~~~m 233 (638)
+.|++++|.+.|++..+.... +...+.. +...+.+.|++++|.+.+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 888888888888888775321 3444433 333366778888888777654
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.15 E-value=1.4e-05 Score=67.56 Aligned_cols=106 Identities=14% Similarity=0.003 Sum_probs=79.3
Q ss_pred chhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 006615 476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV 555 (638)
Q Consensus 476 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~ 555 (638)
.|+....+..+...+.+.|++++|...|++..... +.+...|..+-.+|...|++++|...|++..... |+
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~------ 87 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IX------ 87 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT------
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CC------
Confidence 45555677777888888888888888888887642 2256677777788888888888888888887642 22
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCC
Q 006615 556 LIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVP 606 (638)
Q Consensus 556 li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (638)
+...|..+..+|...|++++|.+.+++..+..+..
T Consensus 88 ----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 88 ----------------EPRFPFHAAECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp ----------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred ----------------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 34566777888888888888888888888876543
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.13 E-value=3.4e-05 Score=63.37 Aligned_cols=120 Identities=11% Similarity=0.012 Sum_probs=94.8
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHH
Q 006615 169 LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLIL 248 (638)
Q Consensus 169 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 248 (638)
+.+...|..+...+.+.|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.|++..+.. ..+...|..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 4457788999999999999999999999998753 2267888899999999999999999999987643 2367788999
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 006615 249 VEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMG 290 (638)
Q Consensus 249 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g 290 (638)
...+.+.|++++|.+.|++..+...........+...+...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 999999999999999999987754333333344444444443
No 137
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.11 E-value=0.0051 Score=63.21 Aligned_cols=356 Identities=7% Similarity=-0.063 Sum_probs=202.1
Q ss_pred CChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCC-hHHHHHHHHHHHh-CCC-CCchHhHHHHHHHHH----hcCC
Q 006615 80 PNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR-NHELKTLIGDISS-SKF-LNVSVNFMNLMQWYS----TSGD 152 (638)
Q Consensus 80 ~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~l~~~~~~-~~~-~~~~~~~~~ll~~~~----~~g~ 152 (638)
++++.+..+|+..... .|+...|...+....+.+. .+....+|+.... .|. ..+...|...+..+. ..|+
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 7899999999998864 4688889888888877663 3556777877664 342 335566777776554 3467
Q ss_pred HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHh-------------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 006615 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAK-------------TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219 (638)
Q Consensus 153 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~ 219 (638)
.+.+..+|++........-...|......-.. .+.+..|..+++++...--..+...|...+..-..
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 88999999999873211111122222111000 11223344444444321000123344444433211
Q ss_pred c--CC-----HHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCh
Q 006615 220 L--GK-----LDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFI 292 (638)
Q Consensus 220 ~--g~-----~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~ 292 (638)
. |- .+.+..+|+++.... .-+...|-..+..+.+.|++++|..+|++.... |......+ .|......
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~--~y~~~~e~ 258 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL--YYGLVMDE 258 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH--HHHHHTTC
T ss_pred CCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH--HHHhhcch
Confidence 1 11 345667888776532 335677888888888899999999999998877 54433211 12222122
Q ss_pred HHHHHHHHHhCcCccccccccccCCCCCccccccCCCCCccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccc
Q 006615 293 QGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNSGVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWT 372 (638)
Q Consensus 293 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (638)
++. ++.+...-... ... +............|
T Consensus 259 ~~~---~~~l~~~~~~~-----------------------------------------~~~----~~~~~~~~~~~~lw- 289 (493)
T 2uy1_A 259 EAV---YGDLKRKYSMG-----------------------------------------EAE----SAEKVFSKELDLLR- 289 (493)
T ss_dssp THH---HHHHHHHTC-------------------------------------------------------CHHHHHHHH-
T ss_pred hHH---HHHHHHHHHhh-----------------------------------------ccc----hhhhhcccccHHHH-
Confidence 222 22211000000 000 00000000000111
Q ss_pred hHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHH--HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006615 373 TRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEK--MLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDF 450 (638)
Q Consensus 373 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~--li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~ 450 (638)
..........+..+.|..+|... ...+ .+...|.. .+...+ .++.+.|..+|+...+.-.. +...+...++.
T Consensus 290 -~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~~-~~~~~~~yid~ 363 (493)
T 2uy1_A 290 -INHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHPD-STLLKEEFFLF 363 (493)
T ss_dssp -HHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred -HHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 11223333456789999999988 4333 24444443 333222 34799999999998875422 34556667777
Q ss_pred HcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 006615 451 YGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF 508 (638)
Q Consensus 451 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 508 (638)
..+.|+.+.|..+|+.+.+ . ...|...+.--...|+.+.+.++++++.+
T Consensus 364 e~~~~~~~~aR~l~er~~k--------~-~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLEK--------T-SRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSCC--------B-HHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH--------H-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7889999999999999632 1 36788888877888999999999988864
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.10 E-value=5e-05 Score=61.97 Aligned_cols=120 Identities=12% Similarity=-0.008 Sum_probs=95.9
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHH
Q 006615 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250 (638)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 250 (638)
+...|..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+++..+.. ..+...|..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 45678888899999999999999999998853 2367888899999999999999999999987643 235778899999
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCh
Q 006615 251 GFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFI 292 (638)
Q Consensus 251 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~ 292 (638)
.+...|++++|...|++..............+...+...|+.
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999876533333334555666666553
No 139
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.10 E-value=2.1e-05 Score=68.77 Aligned_cols=122 Identities=10% Similarity=0.030 Sum_probs=88.1
Q ss_pred HHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHH-HHhcCCH-
Q 006615 76 LRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQW-YSTSGDL- 153 (638)
Q Consensus 76 l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~- 153 (638)
+...|++++|+..|+...+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcc
Confidence 455678888888888777543 2355678888888888888888888888877643 2355566677777 6778887
Q ss_pred -HHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006615 154 -ELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201 (638)
Q Consensus 154 -~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 201 (638)
++|...|++....+ +.+...|..+...+...|++++|...|++..+.
T Consensus 97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888888887764 345677778888888888888888888888774
No 140
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.10 E-value=1.9e-05 Score=75.08 Aligned_cols=193 Identities=10% Similarity=0.036 Sum_probs=122.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 006615 101 NQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS 180 (638)
Q Consensus 101 ~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~ 180 (638)
+...+..+...+...|++++|...+++..+.. +.+...|..+...|.+.|++++|...+++..+.+ +.+...|..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34466777778888899999999888887643 3366778888888899999999999999888764 446778888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHH
Q 006615 181 VYAKTGKNFEAVETFRQVIDEGAIPNS-RTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259 (638)
Q Consensus 181 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 259 (638)
+|.+.|++++|...|++..+.. |+. ..+...+....+......... ........+......+-. + ..|+.+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIAKKKRWNS----IEERRIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHHHHHHHHH----HHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence 8999999999999998877632 211 111112221111111111111 111122334444443322 2 268888
Q ss_pred HHHHHHHHHHhCCCCCCHHHH-H-HHHHHHHc-CChHHHHHHHHHhCcC
Q 006615 260 EAKSLLNEMRDDGKFPGRAMR-V-ALERMQEM-GFIQGANEFLREMLPD 305 (638)
Q Consensus 260 ~A~~l~~~m~~~g~~p~~~~~-~-ll~~~~~~-g~~~~a~~~~~~~~~~ 305 (638)
+|.+.+++..+. .|+.... . +-..+.+. +.++++.++|......
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 898888877654 5665443 2 32333333 6788899999887653
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.09 E-value=3.3e-05 Score=67.45 Aligned_cols=120 Identities=11% Similarity=0.072 Sum_probs=79.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHH-HHccCCh
Q 006615 418 RHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRT-LTKCKRD 496 (638)
Q Consensus 418 ~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~ 496 (638)
..|++++|...++....... .+...+..+...|...|++++|...|++..+.. |+....|..+... +...|++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-----GENAELYAALATVLYYQASQH 95 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----CSCHHHHHHHHHHHHHHTTTC
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHhcCCc
Confidence 45666677777776665543 255667777777777777777777777766542 2223566666666 6677777
Q ss_pred --HHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615 497 --FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQN 544 (638)
Q Consensus 497 --~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 544 (638)
++|...|++..+.. +-+...+..+...|...|++++|...|+++.+.
T Consensus 96 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 96 MTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888888877652 124566777777888888888888888887764
No 142
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.06 E-value=0.0035 Score=60.28 Aligned_cols=156 Identities=12% Similarity=0.012 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhc-C-ChHHHHHHHH
Q 006615 120 ELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG-DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT-G-KNFEAVETFR 196 (638)
Q Consensus 120 ~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~-g-~~~~A~~~~~ 196 (638)
+|..+++.+.... +.+..+|+.--..+...| .+++++.+++.+...+ +-+..+|+.--..+.+. + ++++++++++
T Consensus 72 ~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 72 RALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 4444444444322 122223444334444444 3566666666655543 33455555555444444 4 5556666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHhcccCCCccCHhHHHHHHHHHHccCC-------HHHH
Q 006615 197 QVIDEGAIPNSRTYTVMIEHLVNLGKLD--------SALEVFSALPLMRIKRTSKQYLILVEGFVGVER-------FDEA 261 (638)
Q Consensus 197 ~m~~~g~~p~~~ty~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-------~~~A 261 (638)
.+.+...+ |-.+|+--.-...+.|.++ ++.+.++++.+.. ..|...|+-....+.+.++ ++++
T Consensus 150 k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eE 227 (349)
T 3q7a_A 150 GSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDE 227 (349)
T ss_dssp HHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHH
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHH
Confidence 66553222 4444443333333333333 6666666666543 2366667666666666654 5777
Q ss_pred HHHHHHHHhCCCCCCHHH
Q 006615 262 KSLLNEMRDDGKFPGRAM 279 (638)
Q Consensus 262 ~~l~~~m~~~g~~p~~~~ 279 (638)
++.+++.......-...+
T Consensus 228 Le~~~~aI~~~P~n~SaW 245 (349)
T 3q7a_A 228 LIYILKSIHLIPHNVSAW 245 (349)
T ss_dssp HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhCCCCHHHH
Confidence 777777776544433344
No 143
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.04 E-value=8.9e-05 Score=72.44 Aligned_cols=130 Identities=14% Similarity=0.046 Sum_probs=93.7
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--------------HHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006615 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS--------------TESYNIVMSVYAKTGKNFEAVETFRQVIDEG 202 (638)
Q Consensus 137 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 202 (638)
...+..+...|.+.|++++|...|++.....-... ..+|..+..+|.+.|++++|++.|++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44566777788888888888888888777641111 4678888888888888888888888887753
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHH-HHHHHHH
Q 006615 203 AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEA-KSLLNEM 268 (638)
Q Consensus 203 ~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A-~~l~~~m 268 (638)
. .+...|..+..+|...|++++|.+.|++..+.. +-+...+..+...+.+.|+.++| ..+|+.|
T Consensus 227 p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 227 S-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 267777778888888888888888888776542 22456777777778888887777 4456655
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.03 E-value=1.9e-05 Score=66.68 Aligned_cols=94 Identities=16% Similarity=0.090 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHH
Q 006615 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253 (638)
Q Consensus 174 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 253 (638)
.+..+...+.+.|++++|...|++...... .+...|..+..+|...|++++|.+.|++..... +.+...|..+..+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 344444444455555555555554444211 134444444444455555555555555444321 113344444555555
Q ss_pred ccCCHHHHHHHHHHHH
Q 006615 254 GVERFDEAKSLLNEMR 269 (638)
Q Consensus 254 ~~g~~~~A~~l~~~m~ 269 (638)
..|++++|...|++..
T Consensus 101 ~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQ 116 (148)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555555443
No 145
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.02 E-value=0.0015 Score=62.95 Aligned_cols=140 Identities=9% Similarity=-0.049 Sum_probs=103.8
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-C-CHH
Q 006615 148 STSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG-KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL-G-KLD 224 (638)
Q Consensus 148 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~-g-~~~ 224 (638)
.+.+..++|+++++.+...+ +-+..+||.--..+...| .+++++++++.+.....+ +..+|+.--..+.+. + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChH
Confidence 34455678999999999886 445677888888888888 599999999999986543 677787766666666 6 889
Q ss_pred HHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 006615 225 SALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD--------EAKSLLNEMRDDGKFPGRAMRVALERMQEMG 290 (638)
Q Consensus 225 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g 290 (638)
++.++++.+.+.. ..|..+|+--.-.+.+.|.++ ++++.++++.+..+....++..-...+.+.+
T Consensus 143 ~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 143 SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence 9999999998754 347778877666666656565 8999999998877666666654333333333
No 146
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.01 E-value=6.5e-05 Score=73.41 Aligned_cols=132 Identities=10% Similarity=-0.095 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHcccCCHHHHHHHHHhchhc
Q 006615 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLP--------------FSTIRLIIDFYGISKKADAALKAFHDDRTL 470 (638)
Q Consensus 405 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 470 (638)
+...+..+-..+.+.|++++|...|++......... ...|..+..+|.+.|++++|...|+...+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345678888899999999999999999887764432 578888888999999999999999998875
Q ss_pred cCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCc-chhhHHHHHHHHHccCCHHHH-HHHHHHHHh
Q 006615 471 CGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVP-DVQTFSGLMYHFALQGDEKIV-QKLFSMVRQ 543 (638)
Q Consensus 471 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a-~~l~~~m~~ 543 (638)
.|+...+|..+..+|...|++++|++.|++..+. .| +...+..+..++...|+.++| ..+++.|..
T Consensus 226 -----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 -----DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444578888999999999999999999998875 34 466788888888888888887 456666553
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.00 E-value=0.00028 Score=56.09 Aligned_cols=93 Identities=16% Similarity=0.130 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 006615 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219 (638)
Q Consensus 140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~ 219 (638)
+..+...+...|++++|...|++..... +.+...|..+...+.+.|++++|...+++..+... .+...+..+...+..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHH
Confidence 4444444555555555555555554432 22344444455555555555555555555544311 134444444444555
Q ss_pred cCCHHHHHHHHHhcc
Q 006615 220 LGKLDSALEVFSALP 234 (638)
Q Consensus 220 ~g~~~~A~~~~~~m~ 234 (638)
.|++++|.+.|++..
T Consensus 85 ~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 85 LNRFEEAKRTYEEGL 99 (118)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 555555555554444
No 148
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.98 E-value=0.0003 Score=65.35 Aligned_cols=185 Identities=10% Similarity=-0.042 Sum_probs=132.8
Q ss_pred hcCChHHHHHHHHHHHhCCCCCchHhHHHH-------HHHHHhcCCHHHHHHHHHHHHhcCCCCC---------------
Q 006615 114 KSQRNHELKTLIGDISSSKFLNVSVNFMNL-------MQWYSTSGDLELVLSTWNEYRQRAKLLS--------------- 171 (638)
Q Consensus 114 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~~l-------l~~~~~~g~~~~A~~l~~~m~~~~~~p~--------------- 171 (638)
..++...|.+.|.+..+.. +.....|..+ ...+.+.++..+++..+++-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5789999999999998754 2334456655 4555555555555555444333 2221
Q ss_pred -------HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccC--H
Q 006615 172 -------TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRT--S 242 (638)
Q Consensus 172 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~ 242 (638)
...+-.+...+...|++++|.++|+.+...+ |+....-.+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1233456677889999999999999988754 654456666668899999999999998765432 121 3
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-H--HHHHHHHHHHHcCChHHHHHHHHHhCc
Q 006615 243 KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG-R--AMRVALERMQEMGFIQGANEFLREMLP 304 (638)
Q Consensus 243 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~--~~~~ll~~~~~~g~~~~a~~~~~~~~~ 304 (638)
..+..+-.++...|++++|+..|++.......|. . ..+..-.++.+.|+.++|...|+++..
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4677788999999999999999999985443365 2 345777889999999999999999864
No 149
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.97 E-value=8e-05 Score=62.27 Aligned_cols=104 Identities=11% Similarity=-0.059 Sum_probs=75.1
Q ss_pred chhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 006615 476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV 555 (638)
Q Consensus 476 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~ 555 (638)
.|+....+..+...+.+.|++++|.+.|++..... +.+...|..+..+|...|++++|...|+...+.. |+
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~------ 84 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--IN------ 84 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT------
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CC------
Confidence 45445666677777888888888888888877642 2255667777778888888888888888877642 22
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615 556 LIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND 604 (638)
Q Consensus 556 li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 604 (638)
+...+..+..+|...|++++|.+.+++..+..+
T Consensus 85 ----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 85 ----------------EPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp ----------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 345566777788888888888888888877654
No 150
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.97 E-value=0.00019 Score=68.03 Aligned_cols=186 Identities=9% Similarity=-0.073 Sum_probs=116.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHH
Q 006615 405 DVYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYS 484 (638)
Q Consensus 405 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 484 (638)
+...+..+...+.+.|++++|...|++....... +...+..+..+|.+.|++++|...++...+. .|+....|.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~ 76 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALEL-----DGQSVKAHF 76 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-----CTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCCHHHHH
Confidence 4456677778888899999999999988876533 6778888888888999999999999887764 444457888
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCcch-hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHH
Q 006615 485 SLLRTLTKCKRDFDAINVLEEMIFSGIVPDV-QTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKY 563 (638)
Q Consensus 485 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 563 (638)
.+..+|...|++++|.+.|++..+. .|+. ..+...+....+. .++ .-+..........+......+ ..+...
T Consensus 77 ~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~i~~~l-~~l~~~ 149 (281)
T 2c2l_A 77 FLGQCQLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALRI---AKK-KRWNSIEERRIHQESELHSYL-TRLIAA 149 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHHH---HHH-HHHHHHHHTCCCCCCHHHHHH-HHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHH---HHH-HHHHHHHHHHHhhhHHHHHHH-HHHHHH
Confidence 8888899999999999999887763 2322 1222222222211 111 122223333334443333322 222221
Q ss_pred ---------hhhCCCCCCHHH-HHHHHHHHhcc-CcHHHHHHHHHHHHHcc
Q 006615 564 ---------LSNSNLMPDAAT-KELLKKSLWKE-GRRKEAAAVEERCEKIN 603 (638)
Q Consensus 564 ---------m~~~g~~p~~~~-~~~li~~~~~~-g~~~~A~~~~~~~~~~~ 603 (638)
-......|+... ...+...+.+. +.+++|.++|++..+..
T Consensus 150 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 150 ERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 122345666443 34444445554 77899999999887643
No 151
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.96 E-value=0.0037 Score=63.19 Aligned_cols=194 Identities=8% Similarity=-0.049 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC-C-C--HHHHHHHHHHHcccCCHHHHHHHHHhchhccCCC---cc
Q 006615 406 VYALEKMLTILARHGHVELVDRLIAKLRSD--GMR-L-P--FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI---SK 476 (638)
Q Consensus 406 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~-~-~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~ 476 (638)
...+..++..|...|++++|..++++.... .+. | . ...+..+...+...|++++|...|.+..+..... ..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~ 254 (434)
T 4b4t_Q 175 VDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNS 254 (434)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhh
Confidence 446788889999999999999999876532 121 1 1 2456667778888999999998887765422111 11
Q ss_pred -hhHHHHHHHHHHHHHccCChHHHHHHHHHH--HhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhH
Q 006615 477 -FKLMLLYSSLLRTLTKCKRDFDAINVLEEM--IFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMF 553 (638)
Q Consensus 477 -~~~~~~~~~li~~~~~~g~~~~A~~l~~~m--~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~ 553 (638)
+........++-+....+..+.....+..- ......|+...+..+..++.. +++......+...... +..+....
T Consensus 255 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~l~~~~~~~~~~~~~-~~~~~~~~ 332 (434)
T 4b4t_Q 255 YEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYNN-RSLLDFNTALKQYEKE-LMGDELTR 332 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHHH-TCHHHHHHHHHHTHHH-HTCSHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHHHh-hhHHHHHHHHHHHHHH-HcccHHHH
Confidence 111011111112222223333333333221 112234556777788877764 4555554444433221 12233322
Q ss_pred HHHHHHHHH---H-hhhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615 554 KVLIQAYCK---Y-LSNSNLMP-DAATKELLKKSLWKEGRRKEAAAVEERCEKIND 604 (638)
Q Consensus 554 ~~li~~~~~---~-m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 604 (638)
..+-..+.. . +... ..| +..+...+...+.- ..+++++.+..|...|.
T Consensus 333 ~~~~~l~~~~~~~~l~~~-~~~y~~i~l~~la~~l~~--~~~~~E~~l~~lI~~~~ 385 (434)
T 4b4t_Q 333 SHFNALYDTLLESNLCKI-IEPFECVEISHISKIIGL--DTQQVEGKLSQMILDKI 385 (434)
T ss_dssp HHHHHHHHHHHHHHHHHH-HSSCSCEEHHHHHHHHTC--CHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhcCHHHHHHHhCc--CHHHHHHHHHHHHhCCC
Confidence 222111111 1 1111 111 22234444444432 45677877777776554
No 152
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.94 E-value=0.00011 Score=57.93 Aligned_cols=95 Identities=13% Similarity=0.170 Sum_probs=43.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCcc--CHhHHHHHHHH
Q 006615 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR--TSKQYLILVEG 251 (638)
Q Consensus 174 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~ 251 (638)
.|..+...+.+.|++++|...|++..+... .+...+..+...+...|++++|.+.|++..+.. .. +...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 344444444444555555555544444311 133444444444455555555555554444321 11 24444555555
Q ss_pred HHcc-CCHHHHHHHHHHHHh
Q 006615 252 FVGV-ERFDEAKSLLNEMRD 270 (638)
Q Consensus 252 ~~~~-g~~~~A~~l~~~m~~ 270 (638)
+.+. |++++|.+.+++...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHHHHHhh
Confidence 5555 555555555555544
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.91 E-value=0.00028 Score=57.30 Aligned_cols=93 Identities=20% Similarity=0.157 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 006615 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219 (638)
Q Consensus 140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~ 219 (638)
+..+...+.+.|++++|...|++..+.+ +.+...|..+..++.+.|++++|...|++..+... -+...|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence 4444455555555555555555555443 23345555555555555555555555555554321 134445555555555
Q ss_pred cCCHHHHHHHHHhcc
Q 006615 220 LGKLDSALEVFSALP 234 (638)
Q Consensus 220 ~g~~~~A~~~~~~m~ 234 (638)
.|++++|.+.|++..
T Consensus 85 ~~~~~~A~~~~~~al 99 (126)
T 3upv_A 85 VKEYASALETLDAAR 99 (126)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHH
Confidence 555555555555444
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.90 E-value=0.0001 Score=60.16 Aligned_cols=93 Identities=12% Similarity=0.043 Sum_probs=51.1
Q ss_pred HHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcc--------h
Q 006615 444 IRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD--------V 515 (638)
Q Consensus 444 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------~ 515 (638)
+..+...|.+.|++++|+..|++..+. .|+....|+.+..+|.+.|++++|++.|++.++. .|+ .
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~-----~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a 83 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIEL-----DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV--GRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh--CcccchhhHHHH
Confidence 334444555555555555555554443 2333455666666666666666666666665542 121 1
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615 516 QTFSGLMYHFALQGDEKIVQKLFSMVRQ 543 (638)
Q Consensus 516 ~t~~~li~~~~~~g~~~~a~~l~~~m~~ 543 (638)
.+|..+-.++...|++++|++.|++...
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2455555666666677777776666654
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.89 E-value=0.0003 Score=55.95 Aligned_cols=100 Identities=16% Similarity=0.093 Sum_probs=85.5
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHH
Q 006615 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251 (638)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 251 (638)
...|..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|.+.+++..+.. +.+...|..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 5678888899999999999999999998853 2367888889999999999999999999987643 2357788899999
Q ss_pred HHccCCHHHHHHHHHHHHhCCC
Q 006615 252 FVGVERFDEAKSLLNEMRDDGK 273 (638)
Q Consensus 252 ~~~~g~~~~A~~l~~~m~~~g~ 273 (638)
+...|++++|.+.+++..+.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHhhHHHHHHHHHHHHHcCC
Confidence 9999999999999999987543
No 156
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.88 E-value=0.00037 Score=70.72 Aligned_cols=198 Identities=9% Similarity=0.025 Sum_probs=130.3
Q ss_pred HHHHHHcCCChhHHHHHHHHHHcCCCCCCCh---------------hHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCC
Q 006615 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQ---------------STLHALATVLAKSQRNHELKTLIGDISSS-KFLN 135 (638)
Q Consensus 72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~---------------~~~~~li~~~~~~~~~~~a~~l~~~~~~~-~~~~ 135 (638)
-.+.+...|++++|++.|..+.+...-..+. ..+..+...|...|++++|...+....+. +..+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 3466788899999999999988543222221 23677888888889999998888776531 1112
Q ss_pred ch----HhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHc--CC-
Q 006615 136 VS----VNFMNLMQWYSTSGDLELVLSTWNEYRQR----AKLL-STESYNIVMSVYAKTGKNFEAVETFRQVIDE--GA- 203 (638)
Q Consensus 136 ~~----~~~~~ll~~~~~~g~~~~A~~l~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~- 203 (638)
+. .+.+.+-..+...|+.+.|..+++..... +..+ -..++..+...|...|++++|..++++.... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 21 12333334444567888888888776532 2222 2456777888888889999998888887653 11
Q ss_pred -CC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccC----CCccC--HhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006615 204 -IP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLM----RIKRT--SKQYLILVEGFVGVERFDEAKSLLNEMR 269 (638)
Q Consensus 204 -~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~ 269 (638)
.| ...+|..++..|...|++++|..++++.... +..+. ...+..+...+...|++++|...|.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11 2456777888888888888888888765431 11111 2456666677778888888888777663
No 157
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.87 E-value=0.00014 Score=57.32 Aligned_cols=95 Identities=14% Similarity=0.055 Sum_probs=52.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHH
Q 006615 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP--NSRTYTVMIEH 216 (638)
Q Consensus 139 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~ty~~li~~ 216 (638)
.+..+...+.+.|++++|...|++..+.. +.+...|..+...+...|++++|.+.|++..+.. +. +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 34445555555666666666666555543 2344555555555666666666666666655531 11 34555555555
Q ss_pred HHHc-CCHHHHHHHHHhccc
Q 006615 217 LVNL-GKLDSALEVFSALPL 235 (638)
Q Consensus 217 ~~~~-g~~~~A~~~~~~m~~ 235 (638)
+.+. |++++|.+.++....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHHHHHhh
Confidence 6666 666666666665554
No 158
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.87 E-value=0.00019 Score=58.30 Aligned_cols=95 Identities=5% Similarity=-0.129 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHH
Q 006615 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLL 487 (638)
Q Consensus 408 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li 487 (638)
.|..+...+.+.|++++|...|++..+.... +...+..+..+|.+.|++++|...|+...+. .|+....|..+.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg 79 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEK-----DPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCcHHHHHHHH
Confidence 3445555666666666666666666654422 4455555556666666666666666655543 222234555555
Q ss_pred HHHHccCChHHHHHHHHHHHh
Q 006615 488 RTLTKCKRDFDAINVLEEMIF 508 (638)
Q Consensus 488 ~~~~~~g~~~~A~~l~~~m~~ 508 (638)
..+...|++++|.+.|++..+
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHH
Confidence 566666666666666665554
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.86 E-value=0.00018 Score=60.01 Aligned_cols=94 Identities=13% Similarity=0.016 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 006615 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN 219 (638)
Q Consensus 140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~ 219 (638)
+..+...+.+.|++++|...|++....+ +.+...|..+..++.+.|++++|...|++..+... -+...+..+..+|..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 4445555666666666666666665543 33455566666666666666666666666665421 144455555566666
Q ss_pred cCCHHHHHHHHHhccc
Q 006615 220 LGKLDSALEVFSALPL 235 (638)
Q Consensus 220 ~g~~~~A~~~~~~m~~ 235 (638)
.|++++|.+.|+...+
T Consensus 99 ~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666665543
No 160
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.84 E-value=8.6e-05 Score=60.58 Aligned_cols=94 Identities=13% Similarity=0.145 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCC----HHHHHHH
Q 006615 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGA--IPN----SRTYTVM 213 (638)
Q Consensus 140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~ty~~l 213 (638)
+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...|++..+... .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 4444445555555555555555554432 22344444455555555555555555555444210 111 3334444
Q ss_pred HHHHHHcCCHHHHHHHHHhcc
Q 006615 214 IEHLVNLGKLDSALEVFSALP 234 (638)
Q Consensus 214 i~~~~~~g~~~~A~~~~~~m~ 234 (638)
...+.+.|++++|.+.|++..
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~ 106 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSL 106 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHH
Confidence 444444444444444444443
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.83 E-value=0.00027 Score=57.60 Aligned_cols=110 Identities=9% Similarity=-0.083 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCC--CcchhHHHHH
Q 006615 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGP--ISKFKLMLLY 483 (638)
Q Consensus 406 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~ 483 (638)
...+..+-..+.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|+..++...+..+. ...+....+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 345667888899999999999999998877543 6788889999999999999999999987764221 1122234578
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhH
Q 006615 484 SSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTF 518 (638)
Q Consensus 484 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 518 (638)
..+...+...|++++|++.|++..+. .||..+.
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 88999999999999999999998874 4565443
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.82 E-value=0.00034 Score=59.99 Aligned_cols=97 Identities=9% Similarity=0.011 Sum_probs=57.3
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006615 137 SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEH 216 (638)
Q Consensus 137 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~ 216 (638)
...+..+...+.+.|++++|...|++..+.+ +.+...|..+..+|.+.|++++|+..|++..+... -+...|..+...
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3445555666666666666666666666543 23455666666666666666666666666665421 135555566666
Q ss_pred HHHcCCHHHHHHHHHhccc
Q 006615 217 LVNLGKLDSALEVFSALPL 235 (638)
Q Consensus 217 ~~~~g~~~~A~~~~~~m~~ 235 (638)
|.+.|++++|.+.|++..+
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 6666666666666665544
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.81 E-value=0.0004 Score=57.23 Aligned_cols=93 Identities=10% Similarity=0.078 Sum_probs=39.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006615 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218 (638)
Q Consensus 139 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~ 218 (638)
.+..+...+.+.|++++|...|++....+ +.+...|..+..++...|++++|...|++..+... -+...+..+...|.
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHH
Confidence 34444444444444444444444444432 22334444444444444444444444444444211 12333444444444
Q ss_pred HcCCHHHHHHHHHhc
Q 006615 219 NLGKLDSALEVFSAL 233 (638)
Q Consensus 219 ~~g~~~~A~~~~~~m 233 (638)
..|++++|.+.|++.
T Consensus 89 ~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 89 EMESYDEAIANLQRA 103 (137)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHH
Confidence 444444444444433
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.81 E-value=0.00068 Score=56.57 Aligned_cols=92 Identities=13% Similarity=0.018 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006615 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS----TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIE 215 (638)
Q Consensus 140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~ 215 (638)
+..+...+.+.|++++|...|++..+.. |+ ...|..+..+|.+.|++++|.+.|++..+.. +.+...+..+..
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 107 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHH
Confidence 3334444444444444444444444322 22 3334444444444444444444444444321 112333444444
Q ss_pred HHHHcCCHHHHHHHHHhcc
Q 006615 216 HLVNLGKLDSALEVFSALP 234 (638)
Q Consensus 216 ~~~~~g~~~~A~~~~~~m~ 234 (638)
.+...|++++|.+.|++..
T Consensus 108 ~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 4444444444444444433
No 165
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.80 E-value=0.00014 Score=61.76 Aligned_cols=138 Identities=9% Similarity=-0.108 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCc-chhH
Q 006615 406 VYALEKMLTILARHGHVELVDRLIAKLRSDGMR-LP----FSTIRLIIDFYGISKKADAALKAFHDDRTLCGPIS-KFKL 479 (638)
Q Consensus 406 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~ 479 (638)
..++..+...+...|++++|...+++....... .+ ..++..+...|...|++++|...+++..+...... .+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 345677788888999999999999887643211 11 14677788889999999999999998765432221 2222
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhC----CCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFS----GIVP-DVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543 (638)
Q Consensus 480 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~ 543 (638)
...+..+...+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|.+.+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 467888889999999999999999987652 2111 245677888899999999999999988765
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.80 E-value=0.00024 Score=57.84 Aligned_cols=102 Identities=8% Similarity=-0.028 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCC--cchhHHHHHH
Q 006615 407 YALEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPI--SKFKLMLLYS 484 (638)
Q Consensus 407 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~ 484 (638)
..+..+...+...|++++|...|++...... .+...+..+...|...|++++|...++......+.. ..+....+|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4456667777778888888888887776542 255666677777777777777777777765542110 0000135666
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhC
Q 006615 485 SLLRTLTKCKRDFDAINVLEEMIFS 509 (638)
Q Consensus 485 ~li~~~~~~g~~~~A~~l~~~m~~~ 509 (638)
.+...+.+.|++++|.+.|++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6677777777777777777777664
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.79 E-value=0.00039 Score=57.31 Aligned_cols=100 Identities=16% Similarity=0.072 Sum_probs=81.3
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHH
Q 006615 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILV 249 (638)
Q Consensus 170 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 249 (638)
.+...|..+...+...|++++|...|++..+... .+...|..+...+...|++++|...|++..+.. +.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 4577888888899999999999999999887532 257788888888899999999999998887643 23567888888
Q ss_pred HHHHccCCHHHHHHHHHHHHhC
Q 006615 250 EGFVGVERFDEAKSLLNEMRDD 271 (638)
Q Consensus 250 ~~~~~~g~~~~A~~l~~~m~~~ 271 (638)
.+|...|++++|...|++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 8999999999999998887553
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.75 E-value=0.00039 Score=59.66 Aligned_cols=101 Identities=11% Similarity=0.065 Sum_probs=87.2
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHH
Q 006615 171 STESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVE 250 (638)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 250 (638)
+...|..+...+.+.|++++|.+.|++..+... -+...|..+...|.+.|++++|.+.|++..+.. ..+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 466788889999999999999999999998532 278889999999999999999999999988753 235788999999
Q ss_pred HHHccCCHHHHHHHHHHHHhCCC
Q 006615 251 GFVGVERFDEAKSLLNEMRDDGK 273 (638)
Q Consensus 251 ~~~~~g~~~~A~~l~~~m~~~g~ 273 (638)
+|...|++++|...|++..+...
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHccCHHHHHHHHHHHHHhCC
Confidence 99999999999999999976543
No 169
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.75 E-value=0.00036 Score=62.04 Aligned_cols=88 Identities=10% Similarity=0.009 Sum_probs=42.1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHH
Q 006615 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252 (638)
Q Consensus 173 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 252 (638)
.+|..+..+|.+.|++++|...+++..+.. +.+...+..+..+|...|++++|.+.|++..+.. +-+...+..+...+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 445555555555555555555555555531 1234455555555555555555555555544321 11334444444444
Q ss_pred HccCCHHHHH
Q 006615 253 VGVERFDEAK 262 (638)
Q Consensus 253 ~~~g~~~~A~ 262 (638)
...++.+++.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.74 E-value=0.00049 Score=57.47 Aligned_cols=100 Identities=15% Similarity=-0.014 Sum_probs=85.9
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHH
Q 006615 170 LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN----SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQY 245 (638)
Q Consensus 170 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 245 (638)
.+...+..+...+.+.|++++|.+.|++..+. .|+ ...+..+...|...|++++|.+.+++..+.. ..+...|
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 45778888999999999999999999999874 566 6788888889999999999999999887642 2357788
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615 246 LILVEGFVGVERFDEAKSLLNEMRDDG 272 (638)
Q Consensus 246 ~~li~~~~~~g~~~~A~~l~~~m~~~g 272 (638)
..+..++...|++++|...|++.....
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 889999999999999999999987753
No 171
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.74 E-value=0.00068 Score=60.26 Aligned_cols=128 Identities=11% Similarity=-0.029 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc---------------hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 006615 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNV---------------SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAK 168 (638)
Q Consensus 104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~---------------~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~ 168 (638)
.+..+...+...|++++|...|++..+...... ...+..+..+|.+.|++++|...+++..+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 455566666777777777777777665321111 2567788889999999999999999988874
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHH-HHHHhcc
Q 006615 169 LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSAL-EVFSALP 234 (638)
Q Consensus 169 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~-~~~~~m~ 234 (638)
+.+..+|..+..+|...|++++|.+.|++..+. .| +...+..+...+...++.+++. ..|..|.
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788888999999999999999999998875 34 5667777777777777766665 4444443
No 172
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.71 E-value=0.00023 Score=60.45 Aligned_cols=131 Identities=12% Similarity=0.093 Sum_probs=75.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HH
Q 006615 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKL-LS----TESYNIVMSVYAKTGKNFEAVETFRQVIDEGA-IPN----SR 208 (638)
Q Consensus 139 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~ 208 (638)
++..+...|...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+..- .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4556666666777777777777665543100 01 13566666677777777777777776654210 011 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccC----CCcc-CHhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006615 209 TYTVMIEHLVNLGKLDSALEVFSALPLM----RIKR-TSKQYLILVEGFVGVERFDEAKSLLNEMR 269 (638)
Q Consensus 209 ty~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 269 (638)
++..+...+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4555666666777777777766655431 1111 13445666667777777777777776654
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.69 E-value=0.00041 Score=55.97 Aligned_cols=91 Identities=13% Similarity=0.011 Sum_probs=49.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHc
Q 006615 142 NLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNL 220 (638)
Q Consensus 142 ~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~ 220 (638)
.+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|+..|++..+. .| +...+..+...+.+.
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 34445555566666666666555543 234555555555566666666666666655553 22 344555555555555
Q ss_pred CCHHHHHHHHHhccc
Q 006615 221 GKLDSALEVFSALPL 235 (638)
Q Consensus 221 g~~~~A~~~~~~m~~ 235 (638)
|++++|.+.|++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666555555443
No 174
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.69 E-value=0.013 Score=56.03 Aligned_cols=222 Identities=9% Similarity=0.027 Sum_probs=155.4
Q ss_pred HHHHcCCChh-HHHHHHHHHHcCCCCCCCh-hHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCchHhHH
Q 006615 74 HALRSAPNAD-SALSIMEALKSNPNFSHNQ-STLHALATVLAKSQR----------NHELKTLIGDISSSKFLNVSVNFM 141 (638)
Q Consensus 74 ~~l~~~~~~~-~Al~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~----------~~~a~~l~~~~~~~~~~~~~~~~~ 141 (638)
....+.|.+. +|+.+++.+.... |+. .+|+.=-.++...+. ++++..+++.+.... +.+..+|+
T Consensus 37 ~~~~~~~e~s~eaL~~t~~~L~~n---P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~ 112 (331)
T 3dss_A 37 FQKRQAGELDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH 112 (331)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 3344556655 7999999999653 433 334443333332222 577888888887653 45667788
Q ss_pred HHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006615 142 NLMQWYSTSG--DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK-NFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218 (638)
Q Consensus 142 ~ll~~~~~~g--~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~ 218 (638)
.-.-.+.+.| .+++++.+++.+.+.+ +-|..+|+.-.-++...|. ++++++.++++.+..+. |...|+-....+.
T Consensus 113 hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~ 190 (331)
T 3dss_A 113 HRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLP 190 (331)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHH
T ss_pred HHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 7777777777 4899999999999986 5678899988888888888 59999999999987544 7778877666655
Q ss_pred Hc--------------CCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHcc-----------CCHHHHHHHHHHHHhCCC
Q 006615 219 NL--------------GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV-----------ERFDEAKSLLNEMRDDGK 273 (638)
Q Consensus 219 ~~--------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~ 273 (638)
+. +.++++.+.+....... +-|...|+-+-..+.+. +.++++++.++++.+.
T Consensus 191 ~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~-- 267 (331)
T 3dss_A 191 QLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL-- 267 (331)
T ss_dssp HHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--
T ss_pred HhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--
Confidence 54 45788888888877643 33777887666555554 4578999999999864
Q ss_pred CCCHHHH--HHH---HHHHHcCChHHHHHHHHHhCc
Q 006615 274 FPGRAMR--VAL---ERMQEMGFIQGANEFLREMLP 304 (638)
Q Consensus 274 ~p~~~~~--~ll---~~~~~~g~~~~a~~~~~~~~~ 304 (638)
.|+..+. +++ ......|..+++...+.++.+
T Consensus 268 ~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 268 EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 4666543 221 222345777788888887753
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.65 E-value=0.0003 Score=56.82 Aligned_cols=94 Identities=12% Similarity=0.002 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHH
Q 006615 409 LEKMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLR 488 (638)
Q Consensus 409 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~ 488 (638)
+..+...+.+.|++++|...|++....... +...+..+..++...|++++|...|++..+. .|+....|..+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~~~~~~la~ 93 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDIAVHAALAV 93 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHH
Confidence 334555667777888887777777765433 4555566666666666666666666665554 3333355666666
Q ss_pred HHHccCChHHHHHHHHHHHh
Q 006615 489 TLTKCKRDFDAINVLEEMIF 508 (638)
Q Consensus 489 ~~~~~g~~~~A~~l~~~m~~ 508 (638)
.|.+.|++++|++.|++..+
T Consensus 94 ~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666654
No 176
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.56 E-value=0.032 Score=53.35 Aligned_cols=82 Identities=12% Similarity=-0.056 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHcc-----------CChHHHHHHHHHHHhCCCCcchhhHHHH--
Q 006615 455 KKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKC-----------KRDFDAINVLEEMIFSGIVPDVQTFSGL-- 521 (638)
Q Consensus 455 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~p~~~t~~~l-- 521 (638)
+.++++++.++..... .|++..+|+-+-..+.+. +.++++++.++++.+. .||. .|+.+
T Consensus 207 ~~~~eEle~~~~ai~~-----~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~ 278 (331)
T 3dss_A 207 NVLLKELELVQNAFFT-----DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTI 278 (331)
T ss_dssp HHHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHH
Confidence 3466677777666543 444456676555555444 4578899999999875 5664 34322
Q ss_pred ---HHHHHccCCHHHHHHHHHHHHhC
Q 006615 522 ---MYHFALQGDEKIVQKLFSMVRQN 544 (638)
Q Consensus 522 ---i~~~~~~g~~~~a~~l~~~m~~~ 544 (638)
+.+....|..+++...+.++++.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 279 ILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHh
Confidence 22223456777888888888763
No 177
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.50 E-value=0.00025 Score=56.83 Aligned_cols=84 Identities=11% Similarity=0.029 Sum_probs=43.6
Q ss_pred CChHHHHHHHHHHHhCC--CCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHH
Q 006615 116 QRNHELKTLIGDISSSK--FLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVE 193 (638)
Q Consensus 116 ~~~~~a~~l~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 193 (638)
|++++|...|++..+.+ -+.+...+..+...|.+.|++++|...|++..+.+ +-+...+..+..++.+.|++++|.+
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 44555555555555432 12233445555555666666666666666655543 2335555555566666666666666
Q ss_pred HHHHHHH
Q 006615 194 TFRQVID 200 (638)
Q Consensus 194 ~~~~m~~ 200 (638)
.|++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665554
No 178
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.50 E-value=0.001 Score=67.90 Aligned_cols=134 Identities=7% Similarity=-0.068 Sum_probs=101.6
Q ss_pred HHcccCCHHHHHHHHHhchhccCC---CcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHh-----CC-CCcc-hhhHH
Q 006615 450 FYGISKKADAALKAFHDDRTLCGP---ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF-----SG-IVPD-VQTFS 519 (638)
Q Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g-~~p~-~~t~~ 519 (638)
.+...|++++|..++++..+.... ...|+...+++.|...|...|++++|+.++++..+ .| -.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345678888888888776544322 34566778999999999999999999999998765 23 1233 45799
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhC---CCCCCHhhHHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 006615 520 GLMYHFALQGDEKIVQKLFSMVRQN---GVEPDAYMFKVLIQAYCKYLSNSNLMPD-AATKELLKKSLWKEGRRKEAAAV 595 (638)
Q Consensus 520 ~li~~~~~~g~~~~a~~l~~~m~~~---~~~p~~~~~~~li~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~ 595 (638)
.|...|...|++++|..++++..+- -+-||. |+ ..+.+.|-.++...|.+++|+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H--------------------p~~~~~~~~l~~~~~e~~~~~~ae~~ 457 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH--------------------PITKDLEAMRMQTEMELRMFRQNEFM 457 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS--------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC--------------------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887642 122332 22 34557777888899999999999
Q ss_pred HHHHHHcc
Q 006615 596 EERCEKIN 603 (638)
Q Consensus 596 ~~~~~~~~ 603 (638)
++++.+.-
T Consensus 458 ~~~~~~~~ 465 (490)
T 3n71_A 458 YHKMREAA 465 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998853
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.49 E-value=0.00026 Score=72.75 Aligned_cols=118 Identities=15% Similarity=0.104 Sum_probs=59.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 006615 146 WYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDS 225 (638)
Q Consensus 146 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 225 (638)
.+.+.|++++|.+.|++..+.. +.+..+|+.+..+|.+.|++++|.+.|++..+... -+..+|..+..+|.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHH
Confidence 3445566666666666655543 23355566666666666666666666666655321 134555555555666666666
Q ss_pred HHHHHHhcccCCCccCHhHHHHHHHH--HHccCCHHHHHHHHH
Q 006615 226 ALEVFSALPLMRIKRTSKQYLILVEG--FVGVERFDEAKSLLN 266 (638)
Q Consensus 226 A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~l~~ 266 (638)
|.+.|++..+.. .-+...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666665554421 1122333333333 455555555555555
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.49 E-value=0.0016 Score=52.75 Aligned_cols=87 Identities=11% Similarity=0.025 Sum_probs=36.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCH---HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHH
Q 006615 145 QWYSTSGDLELVLSTWNEYRQRAKLLST---ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN----SRTYTVMIEHL 217 (638)
Q Consensus 145 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~ty~~li~~~ 217 (638)
..+.+.|++++|...|++..+.. +.+. ..+..+..++.+.|++++|...|++..+.. |+ ...+..+...+
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHH
Confidence 33444444444444444444432 1111 234444444444444444444444444421 21 23333344444
Q ss_pred HHcCCHHHHHHHHHhcc
Q 006615 218 VNLGKLDSALEVFSALP 234 (638)
Q Consensus 218 ~~~g~~~~A~~~~~~m~ 234 (638)
.+.|++++|.+.|++..
T Consensus 87 ~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 44444444444444443
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.45 E-value=0.00023 Score=57.00 Aligned_cols=85 Identities=13% Similarity=0.083 Sum_probs=54.6
Q ss_pred cCCHHHHHHHHHHHHhcC--CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006615 150 SGDLELVLSTWNEYRQRA--KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSAL 227 (638)
Q Consensus 150 ~g~~~~A~~l~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 227 (638)
.|++++|...|++..+.+ -+.+...|..+..+|.+.|++++|.+.|++..+.... +...+..+..++.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 466777777777776653 1234556677777777777777777777777765322 4666666777777777777777
Q ss_pred HHHHhccc
Q 006615 228 EVFSALPL 235 (638)
Q Consensus 228 ~~~~~m~~ 235 (638)
+.|++...
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.41 E-value=0.0026 Score=54.16 Aligned_cols=71 Identities=11% Similarity=0.043 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 006615 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA 550 (638)
Q Consensus 477 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~ 550 (638)
|.....|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+...+. .|+.
T Consensus 60 ~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 60 RKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 3445678888888888888888888888887753 225667888888888888888888888888764 4553
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.41 E-value=0.0019 Score=65.99 Aligned_cols=121 Identities=12% Similarity=0.069 Sum_probs=66.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---------------HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 006615 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS---------------TESYNIVMSVYAKTGKNFEAVETFRQVIDEGA 203 (638)
Q Consensus 139 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 203 (638)
.+..+...|.+.|++++|...|++..+.. +.+ ..+|+.+..+|.+.|++++|+..|++..+...
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 45556666677777777777777666542 111 35555666666666666666666666655321
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHH
Q 006615 204 IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262 (638)
Q Consensus 204 ~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 262 (638)
-+...|..+..+|...|++++|...|++..+.. .-+...+..+..++.+.++.+++.
T Consensus 349 -~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 349 -ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 145555555566666666666666666555431 113344555555555555555444
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.41 E-value=0.0021 Score=65.55 Aligned_cols=129 Identities=12% Similarity=0.049 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCc--------------hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 006615 103 STLHALATVLAKSQRNHELKTLIGDISSSKFLNV--------------SVNFMNLMQWYSTSGDLELVLSTWNEYRQRAK 168 (638)
Q Consensus 103 ~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~--------------~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~ 168 (638)
..+......+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..|++..+.+
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 3577777888889999999999998876321111 4678889999999999999999999999875
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHH-HHHhcc
Q 006615 169 LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALE-VFSALP 234 (638)
Q Consensus 169 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~-~~~~m~ 234 (638)
+.+..+|..+..+|.+.|++++|...|++..+. .| +...+..+...+.+.++.+++.+ ++..|.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999884 45 56678888888888888887763 445443
No 185
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.40 E-value=0.0052 Score=49.67 Aligned_cols=92 Identities=17% Similarity=0.089 Sum_probs=55.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCch---HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHhHHHHHHH
Q 006615 108 LATVLAKSQRNHELKTLIGDISSSKFLNVS---VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS---TESYNIVMSV 181 (638)
Q Consensus 108 li~~~~~~~~~~~a~~l~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~---~~~~~~li~~ 181 (638)
+...+...|++++|...++...+... .+. ..+..+...+.+.|++++|...|++..... +.+ ..++..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 44455566666666666666655321 112 345556666677777777777777766653 122 4556666667
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 006615 182 YAKTGKNFEAVETFRQVIDE 201 (638)
Q Consensus 182 ~~~~g~~~~A~~~~~~m~~~ 201 (638)
+.+.|++++|...|++..+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777664
No 186
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.40 E-value=0.0016 Score=66.53 Aligned_cols=130 Identities=8% Similarity=-0.114 Sum_probs=100.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHc-----CC-CC-CHHHHHHHHHHHcccCCHHHHHHHHHhchhc---cCCCcchhHHHHH
Q 006615 414 TILARHGHVELVDRLIAKLRSD-----GM-RL-PFSTIRLIIDFYGISKKADAALKAFHDDRTL---CGPISKFKLMLLY 483 (638)
Q Consensus 414 ~~~~~~g~~~~a~~l~~~m~~~-----g~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~ 483 (638)
..+...|++++|+.++++..+. |. .| ...+++.|..+|...|++++|..++++..+. .-+...|++..++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3456789999999999887642 21 12 2367889999999999999999999986543 2334578888999
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHh-----CCC-Ccch-hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615 484 SSLLRTLTKCKRDFDAINVLEEMIF-----SGI-VPDV-QTFSGLMYHFALQGDEKIVQKLFSMVRQ 543 (638)
Q Consensus 484 ~~li~~~~~~g~~~~A~~l~~~m~~-----~g~-~p~~-~t~~~li~~~~~~g~~~~a~~l~~~m~~ 543 (638)
+.|...|...|++++|+.++++..+ .|- -|++ .+.+.+-.++...|.+++|..++..+.+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998754 332 2333 3456667788899999999999998875
No 187
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.36 E-value=0.00054 Score=70.35 Aligned_cols=124 Identities=14% Similarity=0.023 Sum_probs=94.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHH
Q 006615 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFV 253 (638)
Q Consensus 175 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 253 (638)
|..+...+.+.|++++|.+.|++..+. .| +..+|..+..+|.+.|++++|.+.+++..+.. ..+...|..+..+|.
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 85 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 444445567889999999999999985 34 58899999999999999999999999988753 236788999999999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHcCChHHHHHHHHH
Q 006615 254 GVERFDEAKSLLNEMRDDGKFPGRAMRVA--LERMQEMGFIQGANEFLRE 301 (638)
Q Consensus 254 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~l--l~~~~~~g~~~~a~~~~~~ 301 (638)
+.|++++|.+.|++..+...........+ +..+.+.|++++|.+.+++
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999987643333333333 3447888999999999874
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.36 E-value=0.0032 Score=62.14 Aligned_cols=94 Identities=11% Similarity=-0.038 Sum_probs=70.5
Q ss_pred chhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 006615 476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKV 555 (638)
Q Consensus 476 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~ 555 (638)
.|....+|..+..+|.+.|++++|++.+++..+.. +-+...|..+..+|...|++++|.+.|++..+. .|+
T Consensus 269 ~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~------ 339 (370)
T 1ihg_A 269 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APE------ 339 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT------
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCC------
Confidence 44445788889999999999999999999998853 225677888888999999999999999988874 232
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 006615 556 LIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAA 594 (638)
Q Consensus 556 li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 594 (638)
+...+..+..++.+.|+.+++.+
T Consensus 340 ----------------~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 340 ----------------DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666554
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.33 E-value=0.00065 Score=66.28 Aligned_cols=129 Identities=11% Similarity=-0.070 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchh------------------hHHHHHHHHHccCCHHHHHHHHHHH
Q 006615 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ------------------TFSGLMYHFALQGDEKIVQKLFSMV 541 (638)
Q Consensus 480 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~------------------t~~~li~~~~~~g~~~~a~~l~~~m 541 (638)
+..|..+...+.+.|++++|...|++..+. .|+.. .|..+..+|.+.|++++|...+++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666777777778888888888776653 34433 7888899999999999999999998
Q ss_pred HhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCccccccee--eeec
Q 006615 542 RQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIW--AVSS 619 (638)
Q Consensus 542 ~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~w--~~~~ 619 (638)
.+.. |+ +...|..+..+|...|++++|.+.+++..+..+..+........ ....
T Consensus 257 l~~~--p~----------------------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~ 312 (338)
T 2if4_A 257 LTEE--EK----------------------NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEK 312 (338)
T ss_dssp HHHC--TT----------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred HHhC--CC----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 8742 22 56778889999999999999999999988876533322222211 1234
Q ss_pred cccchhccccccccc
Q 006615 620 ADLTRVHSIYRNSIT 634 (638)
Q Consensus 620 ~~~~~~~~~~~~~~~ 634 (638)
....++...|++++.
T Consensus 313 ~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 313 ALYQKQKEMYKGIFK 327 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHhhC
Confidence 455666777777764
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.33 E-value=0.0022 Score=53.64 Aligned_cols=64 Identities=11% Similarity=0.062 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhC-----CCCcc-hhhH----HHHHHHHHccCCHHHHHHHHHHHHh
Q 006615 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFS-----GIVPD-VQTF----SGLMYHFALQGDEKIVQKLFSMVRQ 543 (638)
Q Consensus 480 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~-~~t~----~~li~~~~~~g~~~~a~~l~~~m~~ 543 (638)
...|+.+..++.+.|++++|+..+++.++. .+.|+ ...| ...-.++...|++++|+..|++..+
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 457888888888889998888888888773 12564 4567 7888888899999999999988775
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.00041 Score=54.64 Aligned_cols=95 Identities=9% Similarity=0.005 Sum_probs=61.6
Q ss_pred chHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-------HH
Q 006615 136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN-------SR 208 (638)
Q Consensus 136 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~ 208 (638)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|.+.|++..+. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 34456667777777788888888887777654 345677777777777888888888888777763 344 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhc
Q 006615 209 TYTVMIEHLVNLGKLDSALEVFSAL 233 (638)
Q Consensus 209 ty~~li~~~~~~g~~~~A~~~~~~m 233 (638)
.+..+..++...|+.+.|.+.|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 4444455555555555554444443
No 192
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.29 E-value=0.002 Score=55.00 Aligned_cols=104 Identities=9% Similarity=-0.136 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc--------CC--------CC-CHHHHHHHHHHHcccCCHHHHHHHHHhch
Q 006615 406 VYALEKMLTILARHGHVELVDRLIAKLRSD--------GM--------RL-PFSTIRLIIDFYGISKKADAALKAFHDDR 468 (638)
Q Consensus 406 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--------g~--------~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 468 (638)
...+...-..+.+.|++++|...|.+.... .. .| +...|..+..+|.+.|++++|...++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345666777788888988888888887654 10 11 23677888889999999999999999988
Q ss_pred hccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchh
Q 006615 469 TLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQ 516 (638)
Q Consensus 469 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 516 (638)
+. .|+...+|..+..+|...|++++|.+.|++..+. .|+..
T Consensus 91 ~~-----~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 91 KR-----EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp HH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred hc-----CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 75 4555678999999999999999999999998875 56644
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.23 E-value=0.004 Score=61.41 Aligned_cols=89 Identities=10% Similarity=0.025 Sum_probs=43.7
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHH
Q 006615 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251 (638)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 251 (638)
..+|+.+..+|.+.|++++|++.+++..+... -+...|..+..+|.+.|++++|.+.|++..+.. .-+...+..+...
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34455555555555555555555555554321 134455555555555555555555555544321 1133444444455
Q ss_pred HHccCCHHHHH
Q 006615 252 FVGVERFDEAK 262 (638)
Q Consensus 252 ~~~~g~~~~A~ 262 (638)
+...++.+++.
T Consensus 351 ~~~~~~~~~a~ 361 (370)
T 1ihg_A 351 KQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555444443
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.22 E-value=0.024 Score=59.22 Aligned_cols=172 Identities=6% Similarity=-0.081 Sum_probs=121.1
Q ss_pred CChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhc
Q 006615 116 QRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD----------LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKT 185 (638)
Q Consensus 116 ~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~----------~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 185 (638)
..-++|...++.+.... +.+...|+.--..+.+.|+ ++++++.++.+.+.+ +-+..+|+.-.-++.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34456677777777643 2334446655555555555 888999999988875 45677888888888888
Q ss_pred C--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHhcccCCCccCHhHHHHHHHHHHcc-------
Q 006615 186 G--KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG-KLDSALEVFSALPLMRIKRTSKQYLILVEGFVGV------- 255 (638)
Q Consensus 186 g--~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~------- 255 (638)
+ +++++++.++++.+.... |...|+.-...+.+.| .++++.+.++++.+... -|...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhccccccc
Confidence 8 679999999999886543 7788887777777888 88899999988887542 3777887777666552
Q ss_pred -------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 006615 256 -------ERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGF 291 (638)
Q Consensus 256 -------g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~ 291 (638)
+.++++++.+++.......-...++-.-..+.+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 557899999998887654444455444444444444
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.22 E-value=0.0013 Score=64.10 Aligned_cols=126 Identities=13% Similarity=-0.012 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH------------------HhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006615 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLST------------------ESYNIVMSVYAKTGKNFEAVETFRQVIDE 201 (638)
Q Consensus 140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~------------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 201 (638)
+..+...+.+.|++++|...|++..... |+. .+|+.+..+|.+.|++++|+..|++..+.
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3344455555556666666555554432 222 26667777777777777777777777764
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCcc-CHhHHHHHHHH-HHccCCHHHHHHHHHHHHh
Q 006615 202 GAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKR-TSKQYLILVEG-FVGVERFDEAKSLLNEMRD 270 (638)
Q Consensus 202 g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~ 270 (638)
. +-+...|..+..+|...|++++|.+.|++..+. .| +...+..|... ....+..+++..+|.+|..
T Consensus 260 ~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 260 E-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 2 125667777777777777777777777776653 23 33344444433 2234555666666666644
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.20 E-value=0.0036 Score=52.32 Aligned_cols=101 Identities=9% Similarity=-0.090 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------CH-----HHHHHHHHHHcccCCHHHHHHHHHhchhc--cCCC
Q 006615 408 ALEKMLTILARHGHVELVDRLIAKLRSDGMRL------PF-----STIRLIIDFYGISKKADAALKAFHDDRTL--CGPI 474 (638)
Q Consensus 408 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~------~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~ 474 (638)
.+...-..+.+.|++++|.+.|++..+..... +. ..|..+-.++.+.|++++|+..++...+. ....
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34556667778888999988888877654331 22 37888888899999999999999887753 0001
Q ss_pred cchhHHHHH----HHHHHHHHccCChHHHHHHHHHHHh
Q 006615 475 SKFKLMLLY----SSLLRTLTKCKRDFDAINVLEEMIF 508 (638)
Q Consensus 475 ~~~~~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~ 508 (638)
.+|+....| .....++...|++++|++.|++..+
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 145556788 9999999999999999999999876
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.95 E-value=0.014 Score=48.01 Aligned_cols=110 Identities=12% Similarity=0.043 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 006615 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVN----LGKLDSAL 227 (638)
Q Consensus 152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~ 227 (638)
++++|...|++..+.| .| ... |-..|...+.+++|.+.|++..+.| +...+..|-..|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EM--FGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CT--THH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CH--hhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3444444444444444 11 111 3333333344444555555444432 33444444444444 44555555
Q ss_pred HHHHhcccCCCccCHhHHHHHHHHHHc----cCCHHHHHHHHHHHHhCC
Q 006615 228 EVFSALPLMRIKRTSKQYLILVEGFVG----VERFDEAKSLLNEMRDDG 272 (638)
Q Consensus 228 ~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 272 (638)
++|++..+.| +...+..|-..|.. .+++++|.+.|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555544432 33344444444444 455555555555554443
No 198
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.92 E-value=0.027 Score=58.88 Aligned_cols=180 Identities=11% Similarity=0.015 Sum_probs=135.7
Q ss_pred HHHcCCC-hhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCchHhHHHH
Q 006615 75 ALRSAPN-ADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQR----------NHELKTLIGDISSSKFLNVSVNFMNL 143 (638)
Q Consensus 75 ~l~~~~~-~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~l~~~~~~~~~~~~~~~~~~l 143 (638)
++.+.|. .++|++.++.+.... +-+..+|+.--.++...++ ++++...++.+.+.. +.+..+|+.-
T Consensus 37 ~~~~~~~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR 113 (567)
T 1dce_A 37 QKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHR 113 (567)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3444454 567899999998653 1233456665555555666 899999999998754 4566778888
Q ss_pred HHHHHhcC--CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 006615 144 MQWYSTSG--DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG-KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNL 220 (638)
Q Consensus 144 l~~~~~~g--~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 220 (638)
.-.+.+.| +++++++.++++.+.+ +-|..+|+.-..++.+.| .++++++.++++.+..+. |...|+.....+.+.
T Consensus 114 ~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l 191 (567)
T 1dce_A 114 CWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhh
Confidence 88888889 7799999999999986 557889999888888888 899999999999986543 788888777766663
Q ss_pred --------------CCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHH
Q 006615 221 --------------GKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDE 260 (638)
Q Consensus 221 --------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 260 (638)
+.++++.+.+++..... +-|...|+-+-..+.+.++.++
T Consensus 192 ~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 192 HPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 55788988888877543 2367788888877777776443
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.92 E-value=0.019 Score=47.19 Aligned_cols=89 Identities=7% Similarity=0.023 Sum_probs=41.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006615 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK----TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLV 218 (638)
Q Consensus 143 ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~ 218 (638)
|-..|...+.+++|.+.|++..+.| +..+++.|-..|.. .+++++|.++|++..+.| +...+..|-..|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY 104 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 3333434444444555555544443 24444444444444 445555555555554432 3344444444444
Q ss_pred H----cCCHHHHHHHHHhcccCC
Q 006615 219 N----LGKLDSALEVFSALPLMR 237 (638)
Q Consensus 219 ~----~g~~~~A~~~~~~m~~~g 237 (638)
. .++.++|.++|++..+.|
T Consensus 105 ~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 105 AGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC
Confidence 4 455555555555544433
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.87 E-value=0.015 Score=43.29 Aligned_cols=63 Identities=19% Similarity=0.286 Sum_probs=35.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006615 138 VNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201 (638)
Q Consensus 138 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 201 (638)
..+..+...+.+.|++++|...|++..... +.+...|..+..++.+.|++++|.+.|++..+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344555555666666666666666655543 234555555556666666666666666665553
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.00093 Score=52.49 Aligned_cols=63 Identities=22% Similarity=0.183 Sum_probs=31.9
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc
Q 006615 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235 (638)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~ 235 (638)
...|..+...+.+.|++++|.+.|++..+.. +.+...+..+..++.+.|++++|.+.|++..+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3445555555555555555555555555431 11344444455555555555555555555443
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.78 E-value=0.0081 Score=47.46 Aligned_cols=77 Identities=6% Similarity=0.039 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006615 122 KTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200 (638)
Q Consensus 122 ~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 200 (638)
...+++..+.. +.+...+..+...|.+.|++++|...|++....+ +.+...|..+..+|.+.|++++|...|++..+
T Consensus 5 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 5 TERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444322 2334445555555555666666666665555543 23345555555556666666666666555544
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.64 E-value=0.01 Score=45.54 Aligned_cols=64 Identities=16% Similarity=0.163 Sum_probs=42.3
Q ss_pred chHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006615 136 VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200 (638)
Q Consensus 136 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 200 (638)
+...+..+...|.+.|++++|...|++..+.+ +.+...|..+..+|.+.|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44556666677777777777777777766654 33455666677777777777777777766654
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.62 E-value=0.014 Score=46.08 Aligned_cols=79 Identities=11% Similarity=0.032 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 006615 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234 (638)
Q Consensus 155 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 234 (638)
.|...|++..+.+ +.+...|..+...|.+.|++++|...|++..+... .+...|..+...|...|++++|.+.|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566667666653 34567777777788888888888888888776432 246677777777777888888887777665
Q ss_pred c
Q 006615 235 L 235 (638)
Q Consensus 235 ~ 235 (638)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.52 E-value=0.0042 Score=51.85 Aligned_cols=99 Identities=9% Similarity=-0.067 Sum_probs=64.1
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCC----------HHHHHHHHHhchhccCCCcchhHHHHHHHH
Q 006615 417 ARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKK----------ADAALKAFHDDRTLCGPISKFKLMLLYSSL 486 (638)
Q Consensus 417 ~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 486 (638)
.+.+.+++|.+.++...+.... +...|..+-.++...++ +++|+..|++..+. .|+...+|..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l-----dP~~~~A~~~L 86 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-----DPKKDEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh-----CcCcHHHHHHH
Confidence 3445566666666666665533 55566655555555544 45788888877765 45555678888
Q ss_pred HHHHHccC-----------ChHHHHHHHHHHHhCCCCcchhhHHHHHH
Q 006615 487 LRTLTKCK-----------RDFDAINVLEEMIFSGIVPDVQTFSGLMY 523 (638)
Q Consensus 487 i~~~~~~g-----------~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 523 (638)
..+|...| ++++|++.|++..+. .|+...|...+.
T Consensus 87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 88887764 778888888887774 576665544444
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.50 E-value=0.019 Score=42.63 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=47.4
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHH
Q 006615 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251 (638)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 251 (638)
...|..+...+.+.|++++|...|++..+.. +.+..++..+...+.+.|++++|.+.|++..+.. +.+...+..+...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4456666666777777777777777766642 1245566666666677777777777776665432 1234444444444
Q ss_pred HH
Q 006615 252 FV 253 (638)
Q Consensus 252 ~~ 253 (638)
+.
T Consensus 87 ~~ 88 (91)
T 1na3_A 87 KQ 88 (91)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 207
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.49 E-value=0.13 Score=56.76 Aligned_cols=100 Identities=18% Similarity=0.171 Sum_probs=46.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHH
Q 006615 183 AKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262 (638)
Q Consensus 183 ~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 262 (638)
.+.|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+.. |..+...|...|+.+...
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHH
Confidence 3445555555554322 2445555566666666666666666555542 333444444455554444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHh
Q 006615 263 SLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREM 302 (638)
Q Consensus 263 ~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~ 302 (638)
++-+.....|.. ......+.+.|++++|.+++.++
T Consensus 728 ~~~~~a~~~~~~-----~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 728 TLAKDAETTGKF-----NLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHTTCH-----HHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHcCch-----HHHHHHHHHcCCHHHHHHHHHHc
Confidence 443333333211 11222334445555555554443
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.46 E-value=0.0073 Score=50.35 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC-----------ChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006615 153 LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG-----------KNFEAVETFRQVIDEGAIPNSRTYTVMI 214 (638)
Q Consensus 153 ~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~g~~p~~~ty~~li 214 (638)
+++|+..|++..+.+ +-+..+|+.+-.+|...| ++++|.+.|++..+ +.|+...|..-+
T Consensus 62 ~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al 131 (158)
T 1zu2_A 62 IQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 446666666666654 234556666666666543 66677777766666 345555444333
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.41 E-value=0.015 Score=58.34 Aligned_cols=91 Identities=8% Similarity=-0.060 Sum_probs=70.6
Q ss_pred ccCCHHHHHHHHHhchhccC---CCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHh-----CC-CCcc-hhhHHHHH
Q 006615 453 ISKKADAALKAFHDDRTLCG---PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF-----SG-IVPD-VQTFSGLM 522 (638)
Q Consensus 453 ~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g-~~p~-~~t~~~li 522 (638)
..|++++|..++++..+... ....|+...+++.|...|...|++++|+.++++..+ .| -.|+ ..+|+.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45788888888887654322 234566678899999999999999999999998765 23 2344 45799999
Q ss_pred HHHHccCCHHHHHHHHHHHHh
Q 006615 523 YHFALQGDEKIVQKLFSMVRQ 543 (638)
Q Consensus 523 ~~~~~~g~~~~a~~l~~~m~~ 543 (638)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999987764
No 210
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.32 E-value=0.014 Score=44.81 Aligned_cols=66 Identities=12% Similarity=0.018 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543 (638)
Q Consensus 477 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~ 543 (638)
|+....|..+...|.+.|++++|++.|++..+.. +-+...|..+..+|...|++++|.+.|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3334567777777777777777777777776642 11345667777777777777777777776654
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.12 E-value=0.033 Score=55.83 Aligned_cols=96 Identities=9% Similarity=-0.128 Sum_probs=68.6
Q ss_pred HHHHcccCCHHHHHHHHHhchhccC---CCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHh-----CC-CCcc-hhh
Q 006615 448 IDFYGISKKADAALKAFHDDRTLCG---PISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIF-----SG-IVPD-VQT 517 (638)
Q Consensus 448 i~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g-~~p~-~~t 517 (638)
+..+.+.|++++|..++++..+... ....|....+++.+...|...|++++|+.++++..+ .| -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 3344556777777777776654322 233555667888899999999999999998887754 22 2233 456
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615 518 FSGLMYHFALQGDEKIVQKLFSMVRQ 543 (638)
Q Consensus 518 ~~~li~~~~~~g~~~~a~~l~~~m~~ 543 (638)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888899999999999998887664
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.10 E-value=0.021 Score=57.24 Aligned_cols=91 Identities=9% Similarity=-0.034 Sum_probs=72.3
Q ss_pred hcCChHHHHHHHHHHHHc---CCCC---C-HHHHHHHHHHHcccCCHHHHHHHHHhchhc---cCCCcchhHHHHHHHHH
Q 006615 418 RHGHVELVDRLIAKLRSD---GMRL---P-FSTIRLIIDFYGISKKADAALKAFHDDRTL---CGPISKFKLMLLYSSLL 487 (638)
Q Consensus 418 ~~g~~~~a~~l~~~m~~~---g~~~---~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~li 487 (638)
..|++++|+.++++..+. -+.| + ..+++.|..+|...|++++|..++++..+. .-+...|+...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999999886542 1222 2 367888999999999999999999986543 23345788889999999
Q ss_pred HHHHccCChHHHHHHHHHHHh
Q 006615 488 RTLTKCKRDFDAINVLEEMIF 508 (638)
Q Consensus 488 ~~~~~~g~~~~A~~l~~~m~~ 508 (638)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998765
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.01 E-value=0.053 Score=54.34 Aligned_cols=98 Identities=13% Similarity=-0.113 Sum_probs=78.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHcccCCHHHHHHHHHhchhc---cCCCcchhHH
Q 006615 411 KMLTILARHGHVELVDRLIAKLRSDG---MRL----PFSTIRLIIDFYGISKKADAALKAFHDDRTL---CGPISKFKLM 480 (638)
Q Consensus 411 ~li~~~~~~g~~~~a~~l~~~m~~~g---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~ 480 (638)
..+..+.+.|++++|++++++..+.. +.| ...+++.+..+|...|++++|..++++.... ..+...|+..
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 34556778899999999999887532 122 2367888999999999999999999986543 2345678888
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHh
Q 006615 481 LLYSSLLRTLTKCKRDFDAINVLEEMIF 508 (638)
Q Consensus 481 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 508 (638)
.+++.|...|...|++++|+.++++..+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998755
No 214
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.89 E-value=0.055 Score=59.69 Aligned_cols=156 Identities=12% Similarity=0.113 Sum_probs=109.3
Q ss_pred HHHHHcCCChhHHHH-HHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615 73 THALRSAPNADSALS-IMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG 151 (638)
Q Consensus 73 ~~~l~~~~~~~~Al~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g 151 (638)
.......+++++|.+ ++..+ ++......++..+.+.|.++.|.++.+. +. .-.....+.|
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~ 666 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVG 666 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHT
T ss_pred HhHHHHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcC
Confidence 344456788888876 44221 1122447888888999999998876531 11 1234567889
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006615 152 DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFS 231 (638)
Q Consensus 152 ~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~ 231 (638)
+++.|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...|...|+.+...++-+
T Consensus 667 ~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~ 731 (814)
T 3mkq_A 667 QLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAK 731 (814)
T ss_dssp CHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHH
Confidence 999999986544 3478999999999999999999999998864 5566666777788777666655
Q ss_pred hcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 006615 232 ALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEM 268 (638)
Q Consensus 232 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 268 (638)
.....|- ++....+|.+.|++++|.+++.++
T Consensus 732 ~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 732 DAETTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5554331 455555677778888888877664
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.81 E-value=0.11 Score=49.82 Aligned_cols=144 Identities=10% Similarity=-0.001 Sum_probs=94.1
Q ss_pred cCCHHHHHHHHHHHHh--cCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc----ccC-C---HHHHHHHHHhchh
Q 006615 403 THDVYALEKMLTILAR--HGH---VELVDRLIAKLRSDGMRLPFSTIRLIIDFYG----ISK-K---ADAALKAFHDDRT 469 (638)
Q Consensus 403 ~p~~~~~~~li~~~~~--~g~---~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~----~~g-~---~~~A~~~~~~~~~ 469 (638)
+.+...|...+++... .++ ..+|..+|++..+..+. ....+..+..+|. ..+ . .......+.....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 3456667777765543 333 57899999999877543 3344444333332 110 1 1111112221111
Q ss_pred ccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 006615 470 LCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549 (638)
Q Consensus 470 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~ 549 (638)
. ...|+.+.+|..+...+...|++++|.+.++++...+ |+...|..+-..+.-.|++++|.+.+++.... .|.
T Consensus 270 ~---~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~ 342 (372)
T 3ly7_A 270 L---PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPG 342 (372)
T ss_dssp C---GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCS
T ss_pred c---ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC
Confidence 1 2234445788888777777899999999999999974 88888878888999999999999999998874 566
Q ss_pred HhhHH
Q 006615 550 AYMFK 554 (638)
Q Consensus 550 ~~~~~ 554 (638)
..||.
T Consensus 343 ~~t~~ 347 (372)
T 3ly7_A 343 ANTLY 347 (372)
T ss_dssp HHHHH
T ss_pred cChHH
Confidence 65553
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.62 E-value=0.26 Score=47.43 Aligned_cols=155 Identities=13% Similarity=-0.002 Sum_probs=96.7
Q ss_pred CCCchHhHHHHHHHHHh--cC---CHHHHHHHHHHHHhcCCCCC-HHhHHHHHHHHHh---cC--ChHHHH---HHHHHH
Q 006615 133 FLNVSVNFMNLMQWYST--SG---DLELVLSTWNEYRQRAKLLS-TESYNIVMSVYAK---TG--KNFEAV---ETFRQV 198 (638)
Q Consensus 133 ~~~~~~~~~~ll~~~~~--~g---~~~~A~~l~~~m~~~~~~p~-~~~~~~li~~~~~---~g--~~~~A~---~~~~~m 198 (638)
.+.+...|...+++... .+ ++.+|..+|++..+.. |+ ...|..+.-+|.. .+ ...... +.++..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 34556667776655543 23 3578888999888865 43 3445444434321 11 111111 122211
Q ss_pred HH-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 006615 199 ID-EGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR 277 (638)
Q Consensus 199 ~~-~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 277 (638)
.. .....+..+|..+...+...|++++|...+++..... |+...|..+-..+.-.|++++|.+.|++.... .|..
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~ 343 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGA 343 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCc
Confidence 11 1224578888888777777899999999999988764 78777777778888899999999999888765 4555
Q ss_pred HHHHHHHHHHHcCChH
Q 006615 278 AMRVALERMQEMGFIQ 293 (638)
Q Consensus 278 ~~~~ll~~~~~~g~~~ 293 (638)
.++.+.....-.-+++
T Consensus 344 ~t~~~~~~l~F~sn~~ 359 (372)
T 3ly7_A 344 NTLYWIENGIFQTSVP 359 (372)
T ss_dssp HHHHHHHHSSSCCCHH
T ss_pred ChHHHHhCceeecchh
Confidence 5665554443333333
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.56 E-value=0.069 Score=40.41 Aligned_cols=58 Identities=21% Similarity=0.379 Sum_probs=40.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-hHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006615 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTE-SYNIVMSVYAKTGKNFEAVETFRQVIDE 201 (638)
Q Consensus 143 ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 201 (638)
....+.+.|++++|...|++..+.+ +.+.. .|..+..+|.+.|++++|.+.|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3455667777777777777777654 33455 6777777777777777777777777764
No 218
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.4 Score=40.54 Aligned_cols=131 Identities=11% Similarity=0.101 Sum_probs=93.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 006615 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223 (638)
Q Consensus 144 l~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 223 (638)
.....+.|+++.|.++.+++ .+...|..|.....+.|+++-|.+.|..... |..+.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 45567889999999888776 2477899999999999999999999988764 55666667777888
Q ss_pred HHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhC
Q 006615 224 DSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREML 303 (638)
Q Consensus 224 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 303 (638)
+...++-+.....| -+|.....+.-.|+++++.++|.+. |..|.. .......|..+.|.++.+++.
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA-----~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLA-----YAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHH-----HHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHH-----HHHHHHcCcHHHHHHHHHHhC
Confidence 77776655544333 2566666777789999999988654 222211 122234677778888887764
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.03 E-value=0.048 Score=41.31 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=36.3
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCc-chh-hHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006615 488 RTLTKCKRDFDAINVLEEMIFSGIVP-DVQ-TFSGLMYHFALQGDEKIVQKLFSMVRQN 544 (638)
Q Consensus 488 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~-t~~~li~~~~~~g~~~~a~~l~~~m~~~ 544 (638)
..+.+.|++++|.+.|++..+. .| +.. .|..+..+|...|++++|.+.|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3455667777777777777664 23 334 6666666777777777777777777654
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.97 E-value=0.63 Score=34.74 Aligned_cols=65 Identities=9% Similarity=-0.006 Sum_probs=33.4
Q ss_pred chHhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006615 136 VSVNFMNLMQWYSTSGD---LELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE 201 (638)
Q Consensus 136 ~~~~~~~ll~~~~~~g~---~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 201 (638)
++..+..+..++...++ .++|..+|++..+.+ +-++.+...+...+.+.|++++|...|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444433332 455566665555543 334445555555555566666666666665553
No 221
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.94 E-value=1.7 Score=34.51 Aligned_cols=85 Identities=12% Similarity=0.058 Sum_probs=64.8
Q ss_pred ccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHH
Q 006615 453 ISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEK 532 (638)
Q Consensus 453 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 532 (638)
.+|++......+-.+... + ...+..++.+...|+-+.-.+++.++.. ..+|+....-.+..||.+.|+..
T Consensus 73 ~C~NlKrVi~C~~~~n~~----s-----e~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r 142 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNTL----N-----EHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDER 142 (172)
T ss_dssp GCSCTHHHHHHHHHTTCC----C-----HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHH
T ss_pred hhhcHHHHHHHHHHhcch----H-----HHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchh
Confidence 455555555555543221 1 4567778888999999999999999644 34678888889999999999999
Q ss_pred HHHHHHHHHHhCCCC
Q 006615 533 IVQKLFSMVRQNGVE 547 (638)
Q Consensus 533 ~a~~l~~~m~~~~~~ 547 (638)
+|.+++.+..+.|++
T Consensus 143 ~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 143 DATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhH
Confidence 999999999999964
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.90 E-value=2.6 Score=35.59 Aligned_cols=101 Identities=11% Similarity=0.080 Sum_probs=50.6
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHH
Q 006615 113 AKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV 192 (638)
Q Consensus 113 ~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 192 (638)
...|+++.|.++.+.+ .+...|..|.+...+.|+++-|.+.|..... +..+.-.|.-.|+.+.-.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3455666665555443 2344566666666666666666666655432 333333444455554444
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 006615 193 ETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALP 234 (638)
Q Consensus 193 ~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 234 (638)
.+-+.....| -++.....+.-.|+++++.++|.+..
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 3333333222 13444444555566666666665544
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.63 E-value=0.47 Score=39.04 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=8.2
Q ss_pred HHHHcCCHHHHHHHHHhcc
Q 006615 216 HLVNLGKLDSALEVFSALP 234 (638)
Q Consensus 216 ~~~~~g~~~~A~~~~~~m~ 234 (638)
+|.+.|++++|.+.++.+.
T Consensus 80 ~~~kl~~Y~~A~~y~~~lL 98 (152)
T 1pc2_A 80 GNYRLKEYEKALKYVRGLL 98 (152)
T ss_dssp HHHHTSCHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHH
Confidence 3344444444444444443
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.57 E-value=0.64 Score=34.71 Aligned_cols=63 Identities=10% Similarity=-0.003 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHccCC---hHHHHHHHHHHHhCCCCcc-hhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006615 481 LLYSSLLRTLTKCKR---DFDAINVLEEMIFSGIVPD-VQTFSGLMYHFALQGDEKIVQKLFSMVRQNG 545 (638)
Q Consensus 481 ~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~ 545 (638)
..+..+..++...++ .++|.+++++..+. .|+ ......+-..+.+.|++++|...|+.+.+..
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 456666666544333 68888888888774 444 4556666677888888888888888888753
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.43 E-value=0.79 Score=37.68 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=13.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHh
Q 006615 246 LILVEGFVGVERFDEAKSLLNEMRD 270 (638)
Q Consensus 246 ~~li~~~~~~g~~~~A~~l~~~m~~ 270 (638)
-.|--+|.+.|++++|.+.++.+.+
T Consensus 75 Y~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 75 FYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344455556666666666665554
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.36 E-value=0.47 Score=36.30 Aligned_cols=61 Identities=8% Similarity=-0.011 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006615 140 FMNLMQWYSTSGDLELVLSTWNEYRQRA------KLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200 (638)
Q Consensus 140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 200 (638)
+-.|...+.+.|+++.|...|+...+.- -.+....+..|..++.+.|+++.|...+++..+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3445555555555555555555544320 012344455555555555555555555555554
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.12 E-value=0.76 Score=42.34 Aligned_cols=104 Identities=13% Similarity=0.060 Sum_probs=77.3
Q ss_pred HHhHHHHHHH-HHhc--CC------hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHHhcc
Q 006615 172 TESYNIVMSV-YAKT--GK------NFEAVETFRQVIDEGAIPN---SRTYTVMIEHLVN-----LGKLDSALEVFSALP 234 (638)
Q Consensus 172 ~~~~~~li~~-~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~ty~~li~~~~~-----~g~~~~A~~~~~~m~ 234 (638)
...|..++.+ ++.. |+ ...|..++++..+ +.|+ ...|..+...|.+ -|+.++|.+.|++..
T Consensus 154 ~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL 231 (301)
T 3u64_A 154 TLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLT 231 (301)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHH
Confidence 3446655543 3332 33 3566777777776 4566 5688888888988 499999999999988
Q ss_pred cCCCcc--CHhHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCC--CCHHH
Q 006615 235 LMRIKR--TSKQYLILVEGFVGV-ERFDEAKSLLNEMRDDGKF--PGRAM 279 (638)
Q Consensus 235 ~~g~~p--~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~--p~~~~ 279 (638)
+. .| +..++......++.. |+.+++.+.+++....... |+...
T Consensus 232 ~L--nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~l 279 (301)
T 3u64_A 232 RY--CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKL 279 (301)
T ss_dssp HH--CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHH
T ss_pred Hh--CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhH
Confidence 74 45 377788888889884 9999999999999998877 66543
No 228
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.97 E-value=11 Score=37.66 Aligned_cols=194 Identities=9% Similarity=-0.026 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCCH--HHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhH--
Q 006615 408 ALEKMLTILARHGHVELVDRLIAKLRS----DGMRLPF--STIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL-- 479 (638)
Q Consensus 408 ~~~~li~~~~~~g~~~~a~~l~~~m~~----~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-- 479 (638)
.+..-++.|...+++..|..++.++.. ....|+. ..+...+..+...+++.+|.+.|.++-........+..
T Consensus 179 ~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~ 258 (445)
T 4b4t_P 179 FILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWK 258 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHH
Confidence 344566677777788777777776532 2222222 34455566666777887777777765432211112211
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHcc--CCHHHHHHHHHHHHhCC-CC----CCHhh
Q 006615 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQ--GDEKIVQKLFSMVRQNG-VE----PDAYM 552 (638)
Q Consensus 480 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~--g~~~~a~~l~~~m~~~~-~~----p~~~~ 552 (638)
...+..++.... .+....-..+.........-++...|..|+.+|... .+++.+.+.|....... +. .+...
T Consensus 259 ~~L~~~v~~~iL-a~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~ 337 (445)
T 4b4t_P 259 PVLSHIVYFLVL-SPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHH 337 (445)
T ss_dssp HHHHHHHHHHHH-SSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHH
T ss_pred HHHHHHHHHHHh-CCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHH
Confidence 011222222222 222222222333332222235778888999988764 45666666665433221 10 11223
Q ss_pred HHHHHHHHHHH-hhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccC
Q 006615 553 FKVLIQAYCKY-LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKIND 604 (638)
Q Consensus 553 ~~~li~~~~~~-m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 604 (638)
+..|....... +....-.-+..++..|...+.- ..+++++.+..|...|.
T Consensus 338 ~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l--~~~evE~~ls~mI~~g~ 388 (445)
T 4b4t_P 338 WEDLQKRVIEHNLRVISEYYSRITLLRLNELLDL--TESQTETYISDLVNQGI 388 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTS--CHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCc--CHHHHHHHHHHHHHCCC
Confidence 44444444333 1110001133445555555543 56889999999988776
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.96 E-value=3.9 Score=32.52 Aligned_cols=68 Identities=18% Similarity=0.124 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 006615 206 NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKF 274 (638)
Q Consensus 206 ~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 274 (638)
+..-+...++.....|+-|+-.+++..+... .+|+....-.+..+|.+.|+..+|.+++.+.-+.|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 3444555566666667777777776664321 2455666666667777777777777777776666654
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.66 E-value=1.9 Score=32.73 Aligned_cols=66 Identities=11% Similarity=-0.006 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 006615 102 QSTLHALATVLAKSQRNHELKTLIGDISSS------KFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRA 167 (638)
Q Consensus 102 ~~~~~~li~~~~~~~~~~~a~~l~~~~~~~------~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~ 167 (638)
...+..+...+...+++..|..+++...+. .-.+....+..|..+|.+.|+++.|...+++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 345666777777777888887777765442 112445667788888888888888888888887653
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.56 E-value=2.1 Score=39.49 Aligned_cols=84 Identities=10% Similarity=-0.018 Sum_probs=53.0
Q ss_pred HHHHHHHHHhchhccCCCcchh--HHHHHHHHHHHHHc-----cCChHHHHHHHHHHHhCCCCc--chhhHHHHHHHHHc
Q 006615 457 ADAALKAFHDDRTLCGPISKFK--LMLLYSSLLRTLTK-----CKRDFDAINVLEEMIFSGIVP--DVQTFSGLMYHFAL 527 (638)
Q Consensus 457 ~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p--~~~t~~~li~~~~~ 527 (638)
...|...+++..+. +|+ ....|..+...|.+ -|+.++|.+.|++..+. .| +..++......++.
T Consensus 179 l~~A~a~lerAleL-----DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~ 251 (301)
T 3u64_A 179 VHAAVMMLERACDL-----WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCI 251 (301)
T ss_dssp HHHHHHHHHHHHHH-----CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHh-----CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHH
Confidence 34444555554443 222 23567777777777 37778888888777774 45 35666666677776
Q ss_pred c-CCHHHHHHHHHHHHhCCCC
Q 006615 528 Q-GDEKIVQKLFSMVRQNGVE 547 (638)
Q Consensus 528 ~-g~~~~a~~l~~~m~~~~~~ 547 (638)
. |+.+++.+.+++..+....
T Consensus 252 ~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 252 PLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TTTCHHHHHHHHHHHHHCCGG
T ss_pred hcCCHHHHHHHHHHHHcCCCC
Confidence 4 7778888888777775433
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.93 E-value=3.6 Score=33.47 Aligned_cols=101 Identities=9% Similarity=0.026 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHHhcCCh------HHHHHHHHHHHhCCCCCchH-hHHHHHH------HHHhcCCHHHHHHHHHHHHhcCC
Q 006615 102 QSTLHALATVLAKSQRN------HELKTLIGDISSSKFLNVSV-NFMNLMQ------WYSTSGDLELVLSTWNEYRQRAK 168 (638)
Q Consensus 102 ~~~~~~li~~~~~~~~~------~~a~~l~~~~~~~~~~~~~~-~~~~ll~------~~~~~g~~~~A~~l~~~m~~~~~ 168 (638)
..+|-..+..+-+.|+. +..+++|++.... ++|+.. .|..-+. .+...++.++|.++|+.+....-
T Consensus 13 yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hK 91 (161)
T 4h7y_A 13 PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCK 91 (161)
T ss_dssp HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhH
Confidence 33555555555555555 5556666665542 334321 0111111 11223566677777776654422
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 006615 169 LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAI 204 (638)
Q Consensus 169 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 204 (638)
.- ...|-....--.+.|++..|.+++......+.+
T Consensus 92 kF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 92 KF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp TB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 22 444444444455667777777777666665544
No 233
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.88 E-value=3.4 Score=40.46 Aligned_cols=127 Identities=17% Similarity=0.184 Sum_probs=81.7
Q ss_pred cCCHHHHHHHHHHHH---hcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHcccCCH-HHHHHHHHhchhccCCCcc
Q 006615 403 THDVYALEKMLTILA---RHGHVELVDRLIAKLRSD--GMRLPFSTIRLIIDFYGISKKA-DAALKAFHDDRTLCGPISK 476 (638)
Q Consensus 403 ~p~~~~~~~li~~~~---~~g~~~~a~~l~~~m~~~--g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~ 476 (638)
..|...|..++.... ..|+.+.|.+.+...... |...... . ...+ +....-+++..
T Consensus 109 ~~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~---------~-~~~w~~~~r~~l~~~~-------- 170 (388)
T 2ff4_A 109 TCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL---------R-DFQFVEPFATALVEDK-------- 170 (388)
T ss_dssp GBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG---------T-TSTTHHHHHHHHHHHH--------
T ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCC---------C-chhHHHHHHHHHHHHH--------
Confidence 335556666655433 357888888888877643 3221110 0 0111 11122222211
Q ss_pred hhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHh
Q 006615 477 FKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ-----NGVEPDAY 551 (638)
Q Consensus 477 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~-----~~~~p~~~ 551 (638)
..+...++..+...|+.++|...++.+.... +-+...|..+|.++.+.|+..+|++.|+...+ .|+.|...
T Consensus 171 ---~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 171 ---VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 1355667888889999999999999887642 34778999999999999999999999987764 35555543
No 234
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.77 E-value=2.3 Score=31.64 Aligned_cols=74 Identities=11% Similarity=0.224 Sum_probs=57.4
Q ss_pred ChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCC
Q 006615 495 RDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNL 569 (638)
Q Consensus 495 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~ 569 (638)
+.-+..+-++.+....+.|+.....+.++||.+..++..|.++|+-++.+- .+...+|..+++-.--.+.+.|+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqElkPtl~ELGI 98 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQELRPTLNELGI 98 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHHHhhHHHHhCC
Confidence 444667777777778899999999999999999999999999999888652 34455677777666555555555
No 235
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.44 E-value=2.2 Score=41.87 Aligned_cols=69 Identities=10% Similarity=0.070 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc-----CCCccCHhH
Q 006615 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL-----MRIKRTSKQ 244 (638)
Q Consensus 175 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 244 (638)
...++.++...|+.++|...+..+.... +-+...|..+|.++.+.|+..+|.+.|+...+ .|+.|+..+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 4445556666666666666666665531 22555666666666666666666666665432 466666554
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=88.36 E-value=0.00072 Score=66.21 Aligned_cols=263 Identities=11% Similarity=0.100 Sum_probs=159.9
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHH
Q 006615 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEG 251 (638)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 251 (638)
...|..|..+..+.+++.+|++.|-+. -|...|..+|....+.|.+++-.+.+...++. ..+..+=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHH
Confidence 346777888888878777777665322 25556788888888888888888887766654 2344555678888
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHcCChHHHHHHHHHhCcCccccccccccCCCCCccccccCCCC
Q 006615 252 FVGVERFDEAKSLLNEMRDDGKFPGRAM-RVALERMQEMGFIQGANEFLREMLPDKRIKNVRYYEDGSDDDEDENDDNNS 330 (638)
Q Consensus 252 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (638)
|++.++..+..+++. .|+.+- -.+...|...|.++.|.-+|..+..-.........
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~---------------- 182 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVH---------------- 182 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSS----------------
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHH----------------
Confidence 888888766544432 244433 36677888888888888888777544333222211
Q ss_pred CccccccccccCCCChhhHHHHhhcCCHHHHHHhhcCCcccchHHHHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHH
Q 006615 331 GVRIAYGVQLKPWLDPKALANTLDEWSPEVVSLLADAKFVWTTRLVCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALE 410 (638)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 410 (638)
.+++..|.+.- .-.-++.||-
T Consensus 183 ----------------------------------------------------L~~yq~AVdaA-------rKAns~ktWK 203 (624)
T 3lvg_A 183 ----------------------------------------------------LGEYQAAVDGA-------RKANSTRTWK 203 (624)
T ss_dssp ----------------------------------------------------CSGGGSSTTTT-------TTCCSSCSHH
T ss_pred ----------------------------------------------------HHHHHHHHHHH-------HhcCChhHHH
Confidence 22222222111 1123667888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHH
Q 006615 411 KMLTILARHGHVELVDRLIAKLRSDGMRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTL 490 (638)
Q Consensus 411 ~li~~~~~~g~~~~a~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 490 (638)
.+-.+|...+.+..|.-.--.++-+.- -...++.-|-..|.+++-+.+++..... ....+.+|+-|.-.|
T Consensus 204 eV~~ACvd~~EfrLAqicGLniIvhad-----eL~elv~~YE~~G~f~ELIsLlEaglgl-----ErAHmGmFTELaILY 273 (624)
T 3lvg_A 204 EVCFACVDGKEFRLAQMCGLHIVVHAD-----ELEELINYYQDRGYFEELITMLEAALGL-----ERAHMGMFTELAILY 273 (624)
T ss_dssp HHTHHHHHSCTTTTTTHHHHHHHCCSS-----CCSGGGSSSSTTCCCTTSTTTHHHHTTS-----TTCCHHHHHHHHHHH
T ss_pred HHHHHHhCchHHHHHHHhcchhcccHH-----HHHHHHHHHHhCCCHHHHHHHHHHHhCC-----CchhHHHHHHHHHHH
Confidence 888899999998877655444442211 1224677788888888888888875432 222257888888888
Q ss_pred HccCChHHHHHHHHHHHhC-CCC------cchhhHHHHHHHHHccCCHHHHH
Q 006615 491 TKCKRDFDAINVLEEMIFS-GIV------PDVQTFSGLMYHFALQGDEKIVQ 535 (638)
Q Consensus 491 ~~~g~~~~A~~l~~~m~~~-g~~------p~~~t~~~li~~~~~~g~~~~a~ 535 (638)
++- +.++-++.++-.-.+ +++ -....|.-++--|.+-.+++.|.
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 876 344444443322111 110 12344555555555555555543
No 237
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.29 E-value=2.6 Score=31.37 Aligned_cols=63 Identities=11% Similarity=0.101 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 006615 117 RNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMS 180 (638)
Q Consensus 117 ~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~ 180 (638)
+.-+.++-++.+......|++.+..+.+++|-+.+++..|.++|+.++.+- .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 344556666666666777777777777777777777777777777776552 233445666554
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=86.48 E-value=6.4 Score=32.05 Aligned_cols=56 Identities=14% Similarity=0.022 Sum_probs=39.8
Q ss_pred cCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 006615 493 CKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549 (638)
Q Consensus 493 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~ 549 (638)
.++.++|.++|+.+++.+-+- ...|.....-=.+.|++..|.+++...+..+-+|.
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 378888888888887642222 45555555555678999999999998888765554
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=85.40 E-value=8.5 Score=41.08 Aligned_cols=123 Identities=11% Similarity=0.245 Sum_probs=73.8
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCHHh--HHHHHHHHHhcCC-hHHHHHHHHHHHHc------CCCC-CHH--
Q 006615 142 NLMQWYSTSGD-LELVLSTWNEYRQRAKLLSTES--YNIVMSVYAKTGK-NFEAVETFRQVIDE------GAIP-NSR-- 208 (638)
Q Consensus 142 ~ll~~~~~~g~-~~~A~~l~~~m~~~~~~p~~~~--~~~li~~~~~~g~-~~~A~~~~~~m~~~------g~~p-~~~-- 208 (638)
.|++.+...|+ .+.|..+|+++.... |...+ ...+|..+.+.++ --+|.+++.+..+. ...+ +..
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 34454445555 577899999988875 32222 2233333333322 23455555444321 1222 111
Q ss_pred --------HHHHHHHHHHHcCCHHHHHHHHHhcccCCCcc-CHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 006615 209 --------TYTVMIEHLVNLGKLDSALEVFSALPLMRIKR-TSKQYLILVEGFVGVERFDEAKSLLNEM 268 (638)
Q Consensus 209 --------ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m 268 (638)
..+.=.+.|...|+++.|.++-.+.... .| +-.+|..|..+|...|+++.|+-.++.+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1111234466788999999988887653 45 4678999999999999999999888877
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=85.37 E-value=3.1 Score=32.82 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=7.8
Q ss_pred HHHHcCCHHHHHHHHHhcc
Q 006615 216 HLVNLGKLDSALEVFSALP 234 (638)
Q Consensus 216 ~~~~~g~~~~A~~~~~~m~ 234 (638)
++.+.|++++|.+.++.+.
T Consensus 83 g~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 3344444444444444333
No 241
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=84.30 E-value=0.011 Score=58.10 Aligned_cols=214 Identities=11% Similarity=0.048 Sum_probs=114.8
Q ss_pred CCCHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHH
Q 006615 66 LLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQ 145 (638)
Q Consensus 66 ~~~~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~ 145 (638)
+..+.-++.+..+.|.+++-+..+.-.++. ...| ..=+.|+-+|++.+++.+.++++ -.||..-...+.+
T Consensus 83 ps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~--~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGD 152 (624)
T 3lvg_A 83 PSSYMEVVQAANTSGNWEELVKYLQMARKK-ARES--YVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGD 152 (624)
T ss_dssp CCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCST--TTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hccc--ccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHH
Confidence 344455777777777777777777666543 2222 24456777777777766543332 1245444556666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC--------------------CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006615 146 WYSTSGDLELVLSTWNEYRQRA--------------------KLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP 205 (638)
Q Consensus 146 ~~~~~g~~~~A~~l~~~m~~~~--------------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 205 (638)
-|...|.++.|.-+|..+.... -..++.||..+-.+|...+.+.-|.-.--.+.-. |
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a 229 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A 229 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H
Confidence 6677777777766665443211 0224566777777777777766655444333321 1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006615 206 NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALER 285 (638)
Q Consensus 206 ~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~ 285 (638)
| -...++..|-+.|.+++-..+++.-.... ....-+|+-|.-.|++-. +++..+-++-.-.+=-.| .++++
T Consensus 230 d--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNip-----Kvira 300 (624)
T 3lvg_A 230 D--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIP-----KVLRA 300 (624)
T ss_dssp S--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCT-----TTHHH
T ss_pred H--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHH-----HHHHH
Confidence 1 22334555666777777666666544211 245566777777777753 233222221110000011 24556
Q ss_pred HHHcCChHHHHHHHHH
Q 006615 286 MQEMGFIQGANEFLRE 301 (638)
Q Consensus 286 ~~~~g~~~~a~~~~~~ 301 (638)
|.+...|.++.-++..
T Consensus 301 cE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 301 AEQAHLWAELVFLYDK 316 (624)
T ss_dssp HTTTTCHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHhc
Confidence 6666666665555543
No 242
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=83.94 E-value=5.9 Score=31.22 Aligned_cols=80 Identities=4% Similarity=-0.090 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCCC--CHHhHHHHHHHHHhcCChHHHHH
Q 006615 119 HELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLEL---VLSTWNEYRQRAKLL--STESYNIVMSVYAKTGKNFEAVE 193 (638)
Q Consensus 119 ~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~---A~~l~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~ 193 (638)
..+++-|......|. ++..+--.+.-++.+..+..+ ++.+++++...+ .| .....-.|.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444444333332 444444445555666655444 666666666543 12 22333344456677777777777
Q ss_pred HHHHHHH
Q 006615 194 TFRQVID 200 (638)
Q Consensus 194 ~~~~m~~ 200 (638)
.++.+.+
T Consensus 96 ~~~~lL~ 102 (126)
T 1nzn_A 96 YVRGLLQ 102 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777776
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.31 E-value=38 Score=33.64 Aligned_cols=190 Identities=17% Similarity=0.215 Sum_probs=120.4
Q ss_pred CChhHHHHHHHHHH----cCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCchHhH--HHHHHHHHhcCC
Q 006615 80 PNADSALSIMEALK----SNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS-SKFLNVSVNF--MNLMQWYSTSGD 152 (638)
Q Consensus 80 ~~~~~Al~~~~~~~----~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~-~~~~~~~~~~--~~ll~~~~~~g~ 152 (638)
|+++.|++-+-.+. ..............++..|...++++...+.+..+.+ +|..+...+. +.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 67788887775554 2334566677889999999999999999887776653 4444433321 222333333333
Q ss_pred HHH--HHHHHHHHHhc--C-CCC---CHHhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHH
Q 006615 153 LEL--VLSTWNEYRQR--A-KLL---STESYNIVMSVYAKTGKNFEAVETFRQVIDE--GAIPN---SRTYTVMIEHLVN 219 (638)
Q Consensus 153 ~~~--A~~l~~~m~~~--~-~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~ty~~li~~~~~ 219 (638)
.+. -..+.+.+... | +-. .......|...|-..|++.+|.+++.++... |.... ...|...++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 332 22222222110 1 111 1223456778899999999999999998753 32221 3456677888999
Q ss_pred cCCHHHHHHHHHhccc----CCCccC--HhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006615 220 LGKLDSALEVFSALPL----MRIKRT--SKQYLILVEGFVGVERFDEAKSLLNEMR 269 (638)
Q Consensus 220 ~g~~~~A~~~~~~m~~----~g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~ 269 (638)
.+++..|..++..+.. ....|+ ...|..++..+...+++.+|.+.|.+..
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999988887642 111222 2456777788888999999988887763
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=83.30 E-value=8.1 Score=41.20 Aligned_cols=129 Identities=8% Similarity=0.033 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCC-HHHHHHHHHHHHhc------CCCC-CHHh
Q 006615 104 TLHALATVLAKSQR-NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGD-LELVLSTWNEYRQR------AKLL-STES 174 (638)
Q Consensus 104 ~~~~li~~~~~~~~-~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~A~~l~~~m~~~------~~~p-~~~~ 174 (638)
....+++.+...++ .+.+..+++++.+.....+.....+++..+.+.++ --+|.++..+..+. ..++ +...
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 44556666666666 57788899888775422222222233343333332 23444444443321 1111 1111
Q ss_pred ---H---HHHH----HHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 006615 175 ---Y---NIVM----SVYAKTGKNFEAVETFRQVIDEGAIP-NSRTYTVMIEHLVNLGKLDSALEVFSALP 234 (638)
Q Consensus 175 ---~---~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 234 (638)
. ..|+ +-+...|+++.|+++-++.... .| +-.||..|..+|.+.|+++.|+-.++-++
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1 1122 3355689999999999988874 45 57899999999999999999999998876
No 245
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.19 E-value=26 Score=31.68 Aligned_cols=119 Identities=12% Similarity=0.059 Sum_probs=78.2
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHHH--
Q 006615 488 RTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNG--VEPDAYMFKVLIQAYCKY-- 563 (638)
Q Consensus 488 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~--~~p~~~~~~~li~~~~~~-- 563 (638)
..+.+.|.+++|++...+-++.. +-|...=..|+.-+|-.|+++.|.+-++...+.. ..|...+|..+|.+=..+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~ 83 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 83 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHH
Confidence 34567888888888887777763 2255556677788888889988888888777642 223344555555554443
Q ss_pred hhhCCC-----CCCHHHHHHHHHHHh--ccCcHHHHHHHHHHHHHccCCCC
Q 006615 564 LSNSNL-----MPDAATKELLKKSLW--KEGRRKEAAAVEERCEKINDVPS 607 (638)
Q Consensus 564 m~~~g~-----~p~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~ 607 (638)
+-.-+- .........|+.++. ..|+.++|.++.+...+.-...+
T Consensus 84 vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 84 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 111111 122335577888776 56999999999999988755333
No 246
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.95 E-value=5.8 Score=31.35 Aligned_cols=73 Identities=11% Similarity=0.227 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCC
Q 006615 496 DFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNL 569 (638)
Q Consensus 496 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~ 569 (638)
.-+..+-++.+....+.|+......-+++|-+..++..|.++|+-++.+ ..+...+|..+++-.--.+.+.||
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqElkPtl~ELGI 141 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQELRPTLNELGI 141 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHHhhHHHHhCC
Confidence 3345666667777788999999999999999999999999999988865 344556677777666555555555
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.25 E-value=19 Score=41.11 Aligned_cols=149 Identities=12% Similarity=-0.012 Sum_probs=98.6
Q ss_pred HHHHHhccCChhHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----------------
Q 006615 376 VCKVLRHFKSPETAWHFFCWVAYQPGYTHDVYALEKMLTILARHGHVELVDRLIAKLRSDGMR----------------- 438 (638)
Q Consensus 376 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~----------------- 438 (638)
+...+...+..+.+.++..+. ..+...--.+..+|...|++++|.++|.+.-. |+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 344455567777788777665 22444444566678889999999999976421 110
Q ss_pred ------CCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhH-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 006615 439 ------LPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL-MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGI 511 (638)
Q Consensus 439 ------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 511 (638)
.-..-|..++..+.+.+.++.+.++-....+..... .++. ...|..+..++...|++++|...+-.+.....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~-~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETD-DEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSC-CHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCC-ChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 112346677777778888887777766655433222 2221 24789999999999999999999988877544
Q ss_pred CcchhhHHHHHHHHHccCCHHHH
Q 006615 512 VPDVQTFSGLMYHFALQGDEKIV 534 (638)
Q Consensus 512 ~p~~~t~~~li~~~~~~g~~~~a 534 (638)
+ ......|+..+|..|..+.-
T Consensus 970 r--~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 970 K--KSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp C--HHHHHHHHHHHHHHCCHHHH
T ss_pred H--HHHHHHHHHHHHhCCChhhh
Confidence 3 45577788877777765543
No 248
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.40 E-value=8.6 Score=30.41 Aligned_cols=63 Identities=10% Similarity=0.078 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 006615 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSV 181 (638)
Q Consensus 118 ~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~ 181 (638)
.-+.++-++.+....+.|++.+..+-+++|-+.+++..|..+|+.++.+ +.+....|..+++-
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE 131 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence 3456666777777778888888888888888888888888888887765 23445567766643
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=75.19 E-value=13 Score=30.81 Aligned_cols=33 Identities=12% Similarity=0.036 Sum_probs=26.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhCcCccccccc
Q 006615 280 RVALERMQEMGFIQGANEFLREMLPDKRIKNVR 312 (638)
Q Consensus 280 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 312 (638)
|.+-.+|.+.+++++|+.+++.+....+.+.+.
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvn 158 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIPSRQRTPKIN 158 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHH
Confidence 577788999999999999999987766665543
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=72.89 E-value=19 Score=41.05 Aligned_cols=149 Identities=11% Similarity=0.017 Sum_probs=99.9
Q ss_pred HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHh----CCC--------------
Q 006615 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISS----SKF-------------- 133 (638)
Q Consensus 72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~----~~~-------------- 133 (638)
++..+...+.++.|.++..+.... +...-.+..++...|++++|...|.+... ...
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~~~------~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLNSD------PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSCCC------HHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhccCC------cHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 455666777777777766665432 22333455566778888888888865421 000
Q ss_pred ----CCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006615 134 ----LNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLS----TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP 205 (638)
Q Consensus 134 ----~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 205 (638)
..-..=|..++..+-+.|.++.+.++-....+..-+-+ ...|..+.+++...|++++|...+..+.....+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 00112377889999999999999888776654321111 225888999999999999999999888875443
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHH
Q 006615 206 NSRTYTVMIEHLVNLGKLDSALE 228 (638)
Q Consensus 206 ~~~ty~~li~~~~~~g~~~~A~~ 228 (638)
......|+...|..|..+.-..
T Consensus 971 -~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp -HHHHHHHHHHHHHHCCHHHHHH
T ss_pred -HHHHHHHHHHHHhCCChhhhhC
Confidence 5677788888888877665543
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=71.66 E-value=34 Score=27.13 Aligned_cols=46 Identities=13% Similarity=0.044 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006615 155 LVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVID 200 (638)
Q Consensus 155 ~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 200 (638)
.++.+++++...+-.-....+-.|.-++.+.|++++|.+..+.+.+
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444555444433111223333344445555555555555555554
No 252
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.57 E-value=22 Score=35.26 Aligned_cols=98 Identities=8% Similarity=0.033 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhH---HHHH
Q 006615 409 LEKMLTILARHGHVELVDRLIAKLRSDGMRL--PFSTIRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKL---MLLY 483 (638)
Q Consensus 409 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~ 483 (638)
...+...|.+.|+++.|.+.+.++...-..+ -...+-.+|..+...+++..+...+.++.........|+. ...|
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~ 213 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTY 213 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Confidence 3445566666666666666666666432222 2344555566666666666666666665544333333322 1122
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHh
Q 006615 484 SSLLRTLTKCKRDFDAINVLEEMIF 508 (638)
Q Consensus 484 ~~li~~~~~~g~~~~A~~l~~~m~~ 508 (638)
..+ .+...+++.+|.+.|-+...
T Consensus 214 ~gl--~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 214 YGI--HCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHH--GGGGTSCHHHHHHHHHHHHH
T ss_pred HHH--HHHHhChHHHHHHHHHHHhc
Confidence 222 23445667777776666544
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=68.54 E-value=13 Score=33.74 Aligned_cols=117 Identities=11% Similarity=0.088 Sum_probs=68.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHc
Q 006615 145 QWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPN----SRTYTVMIEHLVNL 220 (638)
Q Consensus 145 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~ty~~li~~~~~~ 220 (638)
....+.|++++|++....-.+.. +-|...-..|+..+|-.|++++|..-++...+. .|+ ..+|..+|.+=.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~aE~-- 79 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQ-- 79 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHHHH--
Confidence 34567788888888887777764 567888888888888889999988888888774 333 334444444211
Q ss_pred CCHHHHHHHHHhcccCCCc-cCHhHHHHHHHHHH--ccCCHHHHHHHHHHHHh
Q 006615 221 GKLDSALEVFSALPLMRIK-RTSKQYLILVEGFV--GVERFDEAKSLLNEMRD 270 (638)
Q Consensus 221 g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~--~~g~~~~A~~l~~~m~~ 270 (638)
.. .++|.--..-++. ....-...|+.+.. ..|+.++|.++-.+..+
T Consensus 80 --~R--~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 80 --AR--KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp --HH--HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --HH--HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 00 1122211110111 11222344444443 35888888887777643
No 254
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=68.51 E-value=28 Score=30.62 Aligned_cols=178 Identities=7% Similarity=-0.091 Sum_probs=80.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCchHh--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHh--HHHHHHHHHhc
Q 006615 110 TVLAKSQRNHELKTLIGDISSSKFLNVSVN--FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTES--YNIVMSVYAKT 185 (638)
Q Consensus 110 ~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~--~~~li~~~~~~ 185 (638)
...+..|+.+....+++.+.+.|..++... ....+...+..|+.+-+..++ +.|..++... -.+.+...+..
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~l~~A~~~ 89 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV----TAGASPMALDRHGQTAAHLACEH 89 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHH----HcCCCccccCCCCCCHHHHHHHc
Confidence 334556676666666665555444333211 112344455566665433333 3443332211 11233344556
Q ss_pred CChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCH---hHHHHHHHHHHccCCHH
Q 006615 186 GKNFEAVETFRQVIDEGAIPN---SRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTS---KQYLILVEGFVGVERFD 259 (638)
Q Consensus 186 g~~~~A~~~~~~m~~~g~~p~---~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~ 259 (638)
|+.+-+..+++.....++.++ ..-. +.+...+..|+.+-+..+++. |..++. ....+.+...+..|+.+
T Consensus 90 ~~~~~~~~Ll~~~~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~~g~t~L~~A~~~~~~~ 164 (241)
T 1k1a_A 90 RSPTCLRALLDSAAPGTLDLEARNYDGL-TALHVAVNTECQETVQLLLER----GADIDAVDIKSGRSPLIHAVENNSLS 164 (241)
T ss_dssp TCHHHHHHHHHHSCTTSCCTTCCCTTSC-CHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHcCCCccccccccCcCCC-cHHHHHHHcCCHHHHHHHHHc----CCCcccccccCCCcHHHHHHHcCCHH
Confidence 666555555444332111221 1111 233444566776665555544 222221 11223344445566655
Q ss_pred HHHHHHHHHHhCCCCCCHH---HHHHHHHHHHcCChHHHHHHHH
Q 006615 260 EAKSLLNEMRDDGKFPGRA---MRVALERMQEMGFIQGANEFLR 300 (638)
Q Consensus 260 ~A~~l~~~m~~~g~~p~~~---~~~ll~~~~~~g~~~~a~~~~~ 300 (638)
-+..+ .+.|..++.. -.+.+...+..|+.+-+..+++
T Consensus 165 ~v~~L----l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 204 (241)
T 1k1a_A 165 MVQLL----LQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR 204 (241)
T ss_dssp HHHHH----HHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHH----HHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 44333 3445554321 1244555566777766555554
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=68.13 E-value=15 Score=30.50 Aligned_cols=60 Identities=13% Similarity=-0.010 Sum_probs=35.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC-CCCC-------HHHHHHHHHHHcccCCHHHHHHHHHhchhc
Q 006615 411 KMLTILARHGHVELVDRLIAKLRSDG-MRLP-------FSTIRLIIDFYGISKKADAALKAFHDDRTL 470 (638)
Q Consensus 411 ~li~~~~~~g~~~~a~~l~~~m~~~g-~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 470 (638)
.-++.+...|.++.|+-+.+.+.... ..|+ ..++..+.+++...+++..|...|++..+.
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 34556666777777776666544221 1122 124445566777777888887777775443
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.16 E-value=24 Score=34.97 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=34.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006615 139 NFMNLMQWYSTSGDLELVLSTWNEYRQRA--KLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199 (638)
Q Consensus 139 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 199 (638)
+...+...|.+.|+++.|.+.|.++...- ..--...|-.+|..+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34456666666666666666666665431 11223445555555666666666665555543
No 257
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=67.01 E-value=61 Score=27.83 Aligned_cols=73 Identities=10% Similarity=0.070 Sum_probs=51.5
Q ss_pred chhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcc-hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 006615 476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD-VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549 (638)
Q Consensus 476 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~ 549 (638)
+|.....|-..+..+ .++...++.++|..|...|+--. ..-|......+...|++.+|.++|+.-++.+-+|-
T Consensus 76 D~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 76 DPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp CHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 444455666666554 34456688888888888776543 44567777777788888888888888888777774
No 258
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=67.00 E-value=36 Score=25.28 Aligned_cols=13 Identities=23% Similarity=0.217 Sum_probs=5.6
Q ss_pred HhcCCHHHHHHHH
Q 006615 148 STSGDLELVLSTW 160 (638)
Q Consensus 148 ~~~g~~~~A~~l~ 160 (638)
...|++++|..+.
T Consensus 51 mNrG~Yq~Al~l~ 63 (116)
T 2p58_C 51 MNRGDYASALQQG 63 (116)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HcchhHHHHHHhc
Confidence 3444444444433
No 259
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.45 E-value=55 Score=28.11 Aligned_cols=54 Identities=6% Similarity=-0.104 Sum_probs=31.1
Q ss_pred ChHHHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 006615 117 RNHELKTLIGDISSSKFLN-VSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLL 170 (638)
Q Consensus 117 ~~~~a~~l~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p 170 (638)
...++..+|..|.+.|+.. -...|......+...|++.+|.++|+.-.+++-.|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3556666666666555532 23335555666666666666666666666655444
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=63.07 E-value=35 Score=25.35 Aligned_cols=14 Identities=14% Similarity=0.154 Sum_probs=6.1
Q ss_pred HHhcCCHHHHHHHH
Q 006615 147 YSTSGDLELVLSTW 160 (638)
Q Consensus 147 ~~~~g~~~~A~~l~ 160 (638)
+...|++++|..+.
T Consensus 49 LmNrG~Yq~Al~l~ 62 (115)
T 2uwj_G 49 LANQGRYQEALAFA 62 (115)
T ss_dssp HHHTTCHHHHHGGG
T ss_pred HHcchhHHHHHHhc
Confidence 33444444444433
No 261
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=61.79 E-value=61 Score=26.03 Aligned_cols=23 Identities=13% Similarity=0.023 Sum_probs=11.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 006615 178 VMSVYAKTGKNFEAVETFRQVID 200 (638)
Q Consensus 178 li~~~~~~g~~~~A~~~~~~m~~ 200 (638)
|.-++.+.|++++|.+..+.+.+
T Consensus 83 LAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 83 LTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 33445555555555555555554
No 262
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=60.89 E-value=27 Score=30.74 Aligned_cols=150 Identities=12% Similarity=0.041 Sum_probs=86.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHh--HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHH
Q 006615 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTES--YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTY--TVMIEHLV 218 (638)
Q Consensus 143 ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty--~~li~~~~ 218 (638)
.+...++.|+.+.+..+++.+.+.+..++... -.+.+...+..|+.+ +++.+.+.|..|+.... .+.+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 45566788999999999988777765544321 123445556677765 44445556665543221 23455567
Q ss_pred HcCCHHHHHHHHHhcccCCCcc---CHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHcCC
Q 006615 219 NLGKLDSALEVFSALPLMRIKR---TSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA----MRVALERMQEMGF 291 (638)
Q Consensus 219 ~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----~~~ll~~~~~~g~ 291 (638)
..|+.+-+..+++.....++.+ |..-++. +...+..|+.+-+ +.+.+.|..++.. -.+.+...+..|+
T Consensus 88 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQETV----QLLLERGADIDAVDIKSGRSPLIHAVENNS 162 (241)
T ss_dssp HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCHHHH----HHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCHHHH----HHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence 7899888888887765322222 2222233 3334455665444 4444455554321 1245666677888
Q ss_pred hHHHHHHHHH
Q 006615 292 IQGANEFLRE 301 (638)
Q Consensus 292 ~~~a~~~~~~ 301 (638)
.+-+..+++.
T Consensus 163 ~~~v~~Ll~~ 172 (241)
T 1k1a_A 163 LSMVQLLLQH 172 (241)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 8777666654
No 263
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=60.74 E-value=35 Score=30.88 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=13.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC
Q 006615 417 ARHGHVELVDRLIAKLRSDGMRLP 440 (638)
Q Consensus 417 ~~~g~~~~a~~l~~~m~~~g~~~~ 440 (638)
+..+......++++.+.+.|..++
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HHccccchHHHHHHHHHHcCCCCC
Confidence 345554445566666666666554
No 264
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=60.49 E-value=1.3e+02 Score=29.24 Aligned_cols=168 Identities=10% Similarity=-0.086 Sum_probs=105.5
Q ss_pred HHHHHHhccCChhHHHHHHHHHhcCCCCcCC---HHHHHHHHHHHHhcCC-hHHHHHHHHHHH----HcCCCC-CHHHHH
Q 006615 375 LVCKVLRHFKSPETAWHFFCWVAYQPGYTHD---VYALEKMLTILARHGH-VELVDRLIAKLR----SDGMRL-PFSTIR 445 (638)
Q Consensus 375 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~-~~~a~~l~~~m~----~~g~~~-~~~~~~ 445 (638)
-++..+...|+.++..+++.....--+..|- ......++..+....+ .+.-.++..+.. ...... ....=.
T Consensus 24 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~ 103 (394)
T 3txn_A 24 QQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEA 103 (394)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888899999988888765322222222 2335677887776543 344444444333 322110 111223
Q ss_pred HHHHHHcccCCHHHHHHHHHhchhccCCCcch-hHHHHHHHHHHHHHccCChHHHHHHHHHHHhC--CCCcchhhHHHH-
Q 006615 446 LIIDFYGISKKADAALKAFHDDRTLCGPISKF-KLMLLYSSLLRTLTKCKRDFDAINVLEEMIFS--GIVPDVQTFSGL- 521 (638)
Q Consensus 446 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~l- 521 (638)
.+...|...|++.+|..++..+.+.......+ .....|-.-+..|...++..++.+.+...... .+.|+...-..+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 67888999999999999999888765543322 33567888889999999999999999887552 222333222211
Q ss_pred -H--HHHH-ccCCHHHHHHHHHHHH
Q 006615 522 -M--YHFA-LQGDEKIVQKLFSMVR 542 (638)
Q Consensus 522 -i--~~~~-~~g~~~~a~~l~~~m~ 542 (638)
. ..+. ..+++..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 1 2334 6889999888876653
No 265
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=57.89 E-value=55 Score=29.47 Aligned_cols=214 Identities=11% Similarity=0.050 Sum_probs=106.7
Q ss_pred HHHHHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchH--hHHHHHHHHHh
Q 006615 72 VTHALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSV--NFMNLMQWYST 149 (638)
Q Consensus 72 ~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~--~~~~ll~~~~~ 149 (638)
.+...++.|+.+....+++.-... ....+... ...+...+..|+.+-+..++ +.|..++.. .....+...+.
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g-~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~ 81 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEGGANV-NFQEEEGG-WTPLHNAVQMSREDIVELLL----RHGADPVLRKKNGATPFLLAAI 81 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTTC-CCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCc-ccccCCCC-CcHHHHHHHcCCHHHHHHHH----HcCCCCcccCCCCCCHHHHHHH
Confidence 445556667776555554432111 11111111 23444555667766554444 444433321 11233445566
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCH---HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH------------HHHHHH
Q 006615 150 SGDLELVLSTWNEYRQRAKLLST---ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSR------------TYTVMI 214 (638)
Q Consensus 150 ~g~~~~A~~l~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------------ty~~li 214 (638)
.|+.+-+..++ +.|..++. ..++. +...+..|+.+ +++.+.+.|..++.. .-.+.+
T Consensus 82 ~~~~~~v~~Ll----~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L 152 (285)
T 1wdy_A 82 AGSVKLLKLFL----SKGADVNECDFYGFTA-FMEAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152 (285)
T ss_dssp HTCHHHHHHHH----HTTCCTTCBCTTCCBH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHH
T ss_pred cCCHHHHHHHH----HcCCCCCccCcccCCH-HHHHHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcHH
Confidence 77766554444 44544332 22333 34445667654 444445555554422 011345
Q ss_pred HHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHcCC
Q 006615 215 EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA---MRVALERMQEMGF 291 (638)
Q Consensus 215 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---~~~ll~~~~~~g~ 291 (638)
...+..|+.+-+..+++.....--..|..-.+.|..+ +..+......++++.+.+.|..++.. -.+.+...++.|+
T Consensus 153 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 231 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 231 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 5566788888777777652211011223333434333 34555555566667777777766542 1255666777888
Q ss_pred hHHHHHHHHH
Q 006615 292 IQGANEFLRE 301 (638)
Q Consensus 292 ~~~a~~~~~~ 301 (638)
.+-+..+++.
T Consensus 232 ~~~v~~Ll~~ 241 (285)
T 1wdy_A 232 LGLVQRLLEQ 241 (285)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhc
Confidence 8877777763
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=55.79 E-value=1.4e+02 Score=28.16 Aligned_cols=167 Identities=13% Similarity=0.043 Sum_probs=97.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHH----HHHHHHhcCCCCCHHhHHHHH
Q 006615 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLS----TWNEYRQRAKLLSTESYNIVM 179 (638)
Q Consensus 104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~----l~~~m~~~~~~p~~~~~~~li 179 (638)
.|.++..-|.+.+++++|.+++-.- ...+.+.|+...|-+ +.+-+.+.++++|.....-++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3445555677788888888875432 122344455544433 345566667777777777777
Q ss_pred HHHHhcCChH-HHHHHHHHHHH----cC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHH
Q 006615 180 SVYAKTGKNF-EAVETFRQVID----EG--AIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252 (638)
Q Consensus 180 ~~~~~~g~~~-~A~~~~~~m~~----~g--~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 252 (638)
..+.....-+ .=..+.+++.+ .| -.-|......+-..|.+.+++.+|+.-|- . |-.++...|..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHH
Confidence 7766554321 11333333332 23 22366677788888999999999988773 2 2233446676665554
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhC
Q 006615 253 VGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREML 303 (638)
Q Consensus 253 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 303 (638)
...+...++-- .....+..|...+++..|..+++...
T Consensus 178 ~~~~~~~e~dl--------------fiaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 178 YKQDESHTAPL--------------YCARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHTSCGGGHHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCCccHHH--------------HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44443222221 22234566777889999988776654
No 267
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=54.79 E-value=49 Score=26.08 Aligned_cols=64 Identities=17% Similarity=0.179 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCC
Q 006615 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK--NFEAVETFRQVIDEGAI 204 (638)
Q Consensus 140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 204 (638)
...++.-|...|+.++|...++++......+ ...+..+..++-+.+. .+.+..++..+.+.|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~-e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3456666777777777777777765322111 2333444444444432 34566666666665544
No 268
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=52.91 E-value=71 Score=27.77 Aligned_cols=87 Identities=6% Similarity=-0.108 Sum_probs=52.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCCCccCHh--HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---------HHHH
Q 006615 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSK--QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPG---------RAMR 280 (638)
Q Consensus 212 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---------~~~~ 280 (638)
+.+...+..|+.+-+..+++. |..++.. .-.+-+...+..|+.+-+..+++-+.+.|..++ ..-.
T Consensus 123 t~L~~A~~~~~~~~v~~Ll~~----ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~ 198 (232)
T 2rfa_A 123 HPLSFAACVGSEEIVRLLIEH----GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGL 198 (232)
T ss_dssp SHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSC
T ss_pred CHHHHHHHcCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCC
Confidence 344555667777666665543 3333221 112345556677888888777787777776442 2223
Q ss_pred HHHHHHHHcCChHHHHHHHHHh
Q 006615 281 VALERMQEMGFIQGANEFLREM 302 (638)
Q Consensus 281 ~ll~~~~~~g~~~~a~~~~~~~ 302 (638)
+.+...++.|+.+-+..+++.-
T Consensus 199 tpl~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 199 TPFKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhcC
Confidence 5566667788888777777654
No 269
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=52.57 E-value=1.5e+02 Score=27.62 Aligned_cols=67 Identities=10% Similarity=-0.069 Sum_probs=36.2
Q ss_pred CCCcCCHHHHHHHHHHHHhcCChH-HHHHHHHHHH----HcC--CCCCHHHHHHHHHHHcccCCHHHHHHHHHh
Q 006615 400 PGYTHDVYALEKMLTILARHGHVE-LVDRLIAKLR----SDG--MRLPFSTIRLIIDFYGISKKADAALKAFHD 466 (638)
Q Consensus 400 ~~~~p~~~~~~~li~~~~~~g~~~-~a~~l~~~m~----~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 466 (638)
.+.+++......++..+.....-+ .=.++++.+. +.| ..-++.....+...|.+.|++.+|...|-.
T Consensus 86 ~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 86 AEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp TTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 355556666565655554432211 1122223322 222 123666777777788888888888877753
No 270
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=52.44 E-value=69 Score=23.80 Aligned_cols=77 Identities=16% Similarity=0.076 Sum_probs=47.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHH
Q 006615 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMI--EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263 (638)
Q Consensus 186 g~~~~A~~~~~~m~~~g~~p~~~ty~~li--~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 263 (638)
...++|..+-+-+...| + .-..+|| ..+...|++++|..+.+.+. .||...|-+|- -.+.|.-+++..
T Consensus 20 H~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~ 89 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLG---Q-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDR 89 (115)
T ss_dssp TCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHH
Confidence 45566666666666543 2 2222333 34667788888877776665 67877777653 345677777776
Q ss_pred HHHHHHhCC
Q 006615 264 LLNEMRDDG 272 (638)
Q Consensus 264 l~~~m~~~g 272 (638)
-+.++..+|
T Consensus 90 rL~~la~sg 98 (115)
T 2uwj_G 90 RLAGLGGSS 98 (115)
T ss_dssp HHHHHHTCS
T ss_pred HHHHHHhCC
Confidence 666666555
No 271
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=52.40 E-value=1.7e+02 Score=28.30 Aligned_cols=191 Identities=8% Similarity=0.015 Sum_probs=106.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHH----HHHHc-ccCCHHHHHHHHHhchhccCCCcchh--
Q 006615 408 ALEKMLTILARHGHVELVDRLIAKLRSD--GMRLPFSTIRLI----IDFYG-ISKKADAALKAFHDDRTLCGPISKFK-- 478 (638)
Q Consensus 408 ~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~~~~~~~~~l----i~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~-- 478 (638)
.|-.-++.|...+++.++...+...... .+.+++.+...+ .-.+. ..+++..|...|-+.-+.......|.
T Consensus 141 v~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~ 220 (394)
T 3txn_A 141 VQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKAL 220 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHH
Confidence 4556677888899999998888876532 233444333222 12345 78899999888877644333333332
Q ss_pred HHHHHHHHHHHHHccCChHHHHHHHH-HHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHH---
Q 006615 479 LMLLYSSLLRTLTKCKRDFDAINVLE-EMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAYMFK--- 554 (638)
Q Consensus 479 ~~~~~~~li~~~~~~g~~~~A~~l~~-~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~--- 554 (638)
.+..|..+.... ...+ .+--.++. .....-..|+...+..|+.+|. .+++.+...+++.... .+..|.....
T Consensus 221 ~~lkYlvL~aLl-~~~r-~el~~~l~~~~~~~~~~pei~~l~~L~~a~~-~~dl~~f~~iL~~~~~-~l~~D~~l~~h~~ 296 (394)
T 3txn_A 221 TSLKYMLLCKIM-LGQS-DDVNQLVSGKLAITYSGRDIDAMKSVAEASH-KRSLADFQAALKEYKK-ELAEDVIVQAHLG 296 (394)
T ss_dssp HHHHHHHHHHHH-TTCG-GGHHHHHHSHHHHTTCSHHHHHHHHHHHHHH-TTCHHHHHHHHHHSTT-TTTTSHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCH-HHHHHHhccccccccCCccHHHHHHHHHHHH-hCCHHHHHHHHHHHHH-HHhcChHHHHHHH
Confidence 234454443333 2222 22222222 2111113577777777777765 4688777777766543 3555654322
Q ss_pred HHHHHHHHH-hhhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHccCC
Q 006615 555 VLIQAYCKY-LSNSNLMP-DAATKELLKKSLWKEGRRKEAAAVEERCEKINDV 605 (638)
Q Consensus 555 ~li~~~~~~-m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (638)
.|.+..... +... ++| +..+...+...+.- ..++++..+-+|...|.-
T Consensus 297 ~L~~~Ir~~~L~~i-~~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 297 TLYDTMLEQNLCRI-IEPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp HHHHHHHHHHHHHH-HTTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHH-hHhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCCe
Confidence 222221111 1111 122 45667777777764 678999999999988763
No 272
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=52.25 E-value=96 Score=25.63 Aligned_cols=70 Identities=14% Similarity=0.151 Sum_probs=51.5
Q ss_pred chhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcc-hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHh
Q 006615 476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD-VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDAY 551 (638)
Q Consensus 476 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~ 551 (638)
+|.....|-..+..+ +++.++|..|...|+--. ..-|..-...+-..|++.+|.++|+.-++.+-+|-..
T Consensus 62 D~RyLklWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 62 DPRFLNLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 444445565555542 457889999999887554 4457777778888999999999999999888777643
No 273
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=51.75 E-value=72 Score=23.76 Aligned_cols=77 Identities=22% Similarity=0.140 Sum_probs=44.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHH
Q 006615 186 GKNFEAVETFRQVIDEGAIPNSRTYTVMI--EHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKS 263 (638)
Q Consensus 186 g~~~~A~~~~~~m~~~g~~p~~~ty~~li--~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 263 (638)
...++|..+-+-+...| + .-..+|| ..+...|++++|..+.+.+. .||...|-+|-. .+.|.-+++..
T Consensus 21 H~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKG---E-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp TCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHH
Confidence 34566666666665543 2 2222233 34566777777777776665 577777766533 34566666666
Q ss_pred HHHHHHhCC
Q 006615 264 LLNEMRDDG 272 (638)
Q Consensus 264 l~~~m~~~g 272 (638)
-+.++...|
T Consensus 91 rL~~la~sg 99 (116)
T 2p58_C 91 RLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHhCC
Confidence 665665544
No 274
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=50.75 E-value=85 Score=25.54 Aligned_cols=69 Identities=16% Similarity=0.138 Sum_probs=50.1
Q ss_pred chhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcc-hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 006615 476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD-VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA 550 (638)
Q Consensus 476 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~ 550 (638)
+|.....|-..++. .+++.++|..|...|+--. ..-|..-...+...|++.+|.++|+.-++.+-+|-.
T Consensus 67 D~RyLklWl~ya~~------~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 67 DPRFISYCLKFAEY------NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp CHHHHHHHHHHHTT------BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHHHh------cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 34334445444433 2458999999999887544 455777778888899999999999999888877753
No 275
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=50.56 E-value=79 Score=28.02 Aligned_cols=87 Identities=9% Similarity=0.006 Sum_probs=40.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHH
Q 006615 179 MSVYAKTGKNFEAVETFRQVIDE--GAIP----NSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252 (638)
Q Consensus 179 i~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 252 (638)
++.+....++++|.+++++..+. ++++ +.......++.-.....-.-+..+.+++.. .++...-...+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 44555556666666665555431 2221 111112222222222223333344444422 23444455556667
Q ss_pred HccCCHHHHHHHHHHH
Q 006615 253 VGVERFDEAKSLLNEM 268 (638)
Q Consensus 253 ~~~g~~~~A~~l~~~m 268 (638)
.+.|+-++|.++|-+.
T Consensus 102 ~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHH
Confidence 7777777777777655
No 276
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=50.21 E-value=55 Score=27.62 Aligned_cols=84 Identities=12% Similarity=0.119 Sum_probs=39.8
Q ss_pred HHHHHHcCCHHHHHHHHHhc-ccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHc
Q 006615 214 IEHLVNLGKLDSALEVFSAL-PLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAM---RVALERMQEM 289 (638)
Q Consensus 214 i~~~~~~g~~~~A~~~~~~m-~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~---~~ll~~~~~~ 289 (638)
+...++.|+.+-+..+++.- .... .+|..-++.|..+.........-.++.+-+.+.|..++..- .+.+...++.
T Consensus 110 L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~ 188 (201)
T 3hra_A 110 LIPAAEKGHIDNVKLLLEDGREDID-FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQK 188 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCCCTT-CCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCcC-CCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHc
Confidence 34455667776666666554 1111 12333344444444333323333455556666666654321 1344455555
Q ss_pred CChHHHHHH
Q 006615 290 GFIQGANEF 298 (638)
Q Consensus 290 g~~~~a~~~ 298 (638)
|+.+-+.-+
T Consensus 189 ~~~~~~~~L 197 (201)
T 3hra_A 189 GYTEISKIL 197 (201)
T ss_dssp TCHHHHHHH
T ss_pred CCHhHHHHH
Confidence 666544443
No 277
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=49.51 E-value=2.4e+02 Score=29.23 Aligned_cols=115 Identities=10% Similarity=0.010 Sum_probs=64.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHH
Q 006615 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHL----VNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAK 262 (638)
Q Consensus 187 ~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~----~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 262 (638)
+.+.|..++....+.+. .+......+-... ...+...++...+...... ..+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 67888888887765432 2333332222222 2334244555666554332 233333334444455678888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhCc
Q 006615 263 SLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREMLP 304 (638)
Q Consensus 263 ~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 304 (638)
..|+.|......-+...|=.-.++...|+.++|..+|+.+..
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888887553222122234455677778888888888887743
No 278
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=48.54 E-value=1e+02 Score=24.69 Aligned_cols=47 Identities=6% Similarity=0.037 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543 (638)
Q Consensus 497 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~ 543 (638)
.+++.++++..+.+-.-.....-.|.-++.+.|++++|.+..+.+.+
T Consensus 59 ~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 59 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34555555555432111122222333456666666666666666665
No 279
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=46.79 E-value=42 Score=29.96 Aligned_cols=187 Identities=8% Similarity=-0.039 Sum_probs=90.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCch-------HhHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCC---------
Q 006615 109 ATVLAKSQRNHELKTLIGDISSSKFLNVS-------VNFMNLMQWYSTS---GDLELVLSTWNEYRQRAKL--------- 169 (638)
Q Consensus 109 i~~~~~~~~~~~a~~l~~~~~~~~~~~~~-------~~~~~ll~~~~~~---g~~~~A~~l~~~m~~~~~~--------- 169 (638)
+...++.|+.+....+++.+.+.|..++. .-.+. +...+.. |+.+-+..+++.-...+..
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~-L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 84 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTC-LMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCH-HHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCH-HHHHHHccccchHHHHHHHHhcCCcccchhhhcccccc
Confidence 34445667777776777766665544332 22233 3334444 7777666666654433211
Q ss_pred -CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH---------------HHHHHHHHHHcCCHHHHHHHHHhc
Q 006615 170 -LSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRT---------------YTVMIEHLVNLGKLDSALEVFSAL 233 (638)
Q Consensus 170 -p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---------------y~~li~~~~~~g~~~~A~~~~~~m 233 (638)
.|..-++.| ...+..|+.+-+. .+.+.|..++... -.+.+...+..|+.+-+.-+++.-
T Consensus 85 ~~d~~g~t~L-~~A~~~g~~~~v~----~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~ 159 (256)
T 2etb_A 85 DEFYQGHSAL-HIAIEKRSLQCVK----LLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP 159 (256)
T ss_dssp STTTTTCCHH-HHHHHTTCHHHHH----HHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred cccccCCCHH-HHHHHcCCHHHHH----HHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 112223333 3345566655443 3444455554332 224455566778887776666621
Q ss_pred ccCCCcc---CHhHHHHHHHHHH-ccCCHHH---HHHHHHHHHhCCCCC----------CHHHHHHHHHHHHcCChHHHH
Q 006615 234 PLMRIKR---TSKQYLILVEGFV-GVERFDE---AKSLLNEMRDDGKFP----------GRAMRVALERMQEMGFIQGAN 296 (638)
Q Consensus 234 ~~~g~~p---~~~~~~~li~~~~-~~g~~~~---A~~l~~~m~~~g~~p----------~~~~~~ll~~~~~~g~~~~a~ 296 (638)
..|..+ |..-++.|..+.. ..+..+. ..++++.+.+.|..+ +..-.+.+...+..|+.+-+.
T Consensus 160 -~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~ 238 (256)
T 2etb_A 160 -HQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFR 238 (256)
T ss_dssp -SCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred -ccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHH
Confidence 022222 3333444444443 2555541 111222222222222 111124456667778887777
Q ss_pred HHHHHh
Q 006615 297 EFLREM 302 (638)
Q Consensus 297 ~~~~~~ 302 (638)
.+++.-
T Consensus 239 ~Ll~~g 244 (256)
T 2etb_A 239 HILQRE 244 (256)
T ss_dssp HHHHHH
T ss_pred HHHhCC
Confidence 777654
No 280
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=46.16 E-value=45 Score=27.22 Aligned_cols=64 Identities=17% Similarity=0.179 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCC
Q 006615 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK--NFEAVETFRQVIDEGAI 204 (638)
Q Consensus 140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 204 (638)
.+.++.-|...|+.++|...++++......+ ..++..+..++-+.++ .+.+..++..+.+.|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~-e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3456777777778888877777775332111 3334444445544322 34566666666665544
No 281
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=45.88 E-value=20 Score=32.21 Aligned_cols=186 Identities=7% Similarity=-0.062 Sum_probs=93.9
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCchH-------hHHHHHHHHH--hcCCHHHHHHHHHHHHhcC---------CC-CC
Q 006615 111 VLAKSQRNHELKTLIGDISSSKFLNVSV-------NFMNLMQWYS--TSGDLELVLSTWNEYRQRA---------KL-LS 171 (638)
Q Consensus 111 ~~~~~~~~~~a~~l~~~~~~~~~~~~~~-------~~~~ll~~~~--~~g~~~~A~~l~~~m~~~~---------~~-p~ 171 (638)
..++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-...+ +. .|
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d 90 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVY 90 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSS
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccc
Confidence 3456677777777777666555444422 2233433332 5677777777776543321 11 01
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH----------------HHHHHHHHHHcCCHHHHHHHHHhccc
Q 006615 172 TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRT----------------YTVMIEHLVNLGKLDSALEVFSALPL 235 (638)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----------------y~~li~~~~~~g~~~~A~~~~~~m~~ 235 (638)
..-++. +...+..|+.+-+ +.+.+.|..++... -.+.+...+..|+.+-+..+++.. .
T Consensus 91 ~~g~t~-L~~A~~~g~~~~v----~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~-~ 164 (260)
T 3jxi_A 91 YRGQTA-LHIAIERRCKHYV----ELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG-H 164 (260)
T ss_dssp EESBCH-HHHHHHTTCHHHH----HHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS-S
T ss_pred cCCCCH-HHHHHHcCCHHHH----HHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc-c
Confidence 122333 3444566776543 44444566655432 234555567788887777666621 0
Q ss_pred CCCcc---CHhHHHHHHHHHHccC-CH---HHHHHHHHHHHhCCCCC----------CHHHHHHHHHHHHcCChHHHHHH
Q 006615 236 MRIKR---TSKQYLILVEGFVGVE-RF---DEAKSLLNEMRDDGKFP----------GRAMRVALERMQEMGFIQGANEF 298 (638)
Q Consensus 236 ~g~~p---~~~~~~~li~~~~~~g-~~---~~A~~l~~~m~~~g~~p----------~~~~~~ll~~~~~~g~~~~a~~~ 298 (638)
.|..+ |..-++.|..+..... .. +...++++.+.+.|..+ +..-.+.+...++.|+.+-+..+
T Consensus 165 ~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L 244 (260)
T 3jxi_A 165 KQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244 (260)
T ss_dssp CCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHH
Confidence 22222 3333445554443222 12 22234444444443322 11122456667788888888888
Q ss_pred HHHh
Q 006615 299 LREM 302 (638)
Q Consensus 299 ~~~~ 302 (638)
++.-
T Consensus 245 l~~g 248 (260)
T 3jxi_A 245 IRRE 248 (260)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 7765
No 282
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=43.73 E-value=1.2e+02 Score=24.00 Aligned_cols=66 Identities=12% Similarity=-0.015 Sum_probs=29.0
Q ss_pred CCHHhHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc
Q 006615 170 LSTESYNIVMSVYAKTGKN---FEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPL 235 (638)
Q Consensus 170 p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~ 235 (638)
|+..+--.+.-++++..+. .+++.++++..+.+..-....+-.|.-++.+.|++++|.+..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3344433344444444332 34555555555433111122333344445555555555555555543
No 283
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=42.47 E-value=1.3e+02 Score=25.92 Aligned_cols=207 Identities=13% Similarity=0.027 Sum_probs=95.6
Q ss_pred HHHcCCChhHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHH
Q 006615 75 ALRSAPNADSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLE 154 (638)
Q Consensus 75 ~l~~~~~~~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 154 (638)
..+..|+.+....+++.-... ..++.. -...+...+..|+.+-+..+++.-.......+.. ....+...+..|+.+
T Consensus 15 ~A~~~g~~~~~~~Ll~~g~~~--~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~-~~t~L~~A~~~~~~~ 90 (240)
T 3eu9_A 15 KATQYGIYERCRELVEAGYDV--RQPDKE-NVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL-NSTPLHWATRQGHLS 90 (240)
T ss_dssp HHHHTTCHHHHHHHHHTTCCT--TCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTT-TBCHHHHHHHHTCHH
T ss_pred HHHHcCChHHHHHHHHcCCCc--CCCCCC-CCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCc-CCChhHHHHHcCCHH
Confidence 345667766655555421110 111211 1234555667788776655554322111111111 123445556777876
Q ss_pred HHHHHHHHHHhcCCCCCH---HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHHHHHH
Q 006615 155 LVLSTWNEYRQRAKLLST---ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNS---RTYTVMIEHLVNLGKLDSALE 228 (638)
Q Consensus 155 ~A~~l~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~ty~~li~~~~~~g~~~~A~~ 228 (638)
-+..++ +.|..++. ..++ .+...+..|+.+ +++.+.+.|..++. ...+.+..+.. .+......+
T Consensus 91 ~v~~Ll----~~g~~~~~~~~~g~t-~l~~A~~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~-~~~~~~~~~ 160 (240)
T 3eu9_A 91 MVVQLM----KYGADPSLIDGEGCS-CIHLAAQFGHTS----IVAYLIAKGQDVDMMDQNGMTPLMWAAY-RTHSVDPTR 160 (240)
T ss_dssp HHHHHH----HTTCCTTCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH-HCCSSTTHH
T ss_pred HHHHHH----HcCCCCcccCCCCCC-HHHHHHHcCHHH----HHHHHHhcCCCccccCCCCCcHHHHHHH-hCChHHHHH
Confidence 554444 44544332 2223 344455667765 44444455555432 22234444333 344333333
Q ss_pred HHHhcccCCCccCHh---HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHcCChHHHHHHHHHh
Q 006615 229 VFSALPLMRIKRTSK---QYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA---MRVALERMQEMGFIQGANEFLREM 302 (638)
Q Consensus 229 ~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---~~~ll~~~~~~g~~~~a~~~~~~~ 302 (638)
++.+. |..++.. .-.+.+...+..|+.+-+..+++ .|..++.. -.+.+....+.|+.+-+..+++..
T Consensus 161 ~L~~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 161 LLLTF---NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE----AGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp HHHHT---TCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHH----HTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHhc---CCCcchhhccCCCcHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence 33332 2222211 12234555566777665444443 35554422 124566667778877776666654
No 284
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=41.61 E-value=2.2e+02 Score=26.45 Aligned_cols=167 Identities=11% Similarity=-0.004 Sum_probs=97.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHH----HHHHHHhcCCCCCHHhHHHHH
Q 006615 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLS----TWNEYRQRAKLLSTESYNIVM 179 (638)
Q Consensus 104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~----l~~~m~~~~~~p~~~~~~~li 179 (638)
.|.++...+.+.+++++|.+++..- ...+.+.|+...|-+ +.+.+.+.++++|.....-++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g---------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG---------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4455555667777888887775432 222344566554444 455566667777777777777
Q ss_pred HHHHhcCChH-HHHHHHHHHHH----cCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHH
Q 006615 180 SVYAKTGKNF-EAVETFRQVID----EGA--IPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGF 252 (638)
Q Consensus 180 ~~~~~~g~~~-~A~~~~~~m~~----~g~--~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 252 (638)
..+......+ .=.++.+++.+ .|- .-++.....+...|.+.|++.+|+.-|-.-. .-|...+..++.-+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~----~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT----HDSMIKYVDLLWDW 175 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC----HHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CccHHHHHHHHHHH
Confidence 6665533211 12333444432 222 2366777888888999999999888765211 12455666655544
Q ss_pred Hcc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHHHHhC
Q 006615 253 VGV---ERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFLREML 303 (638)
Q Consensus 253 ~~~---g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 303 (638)
... |...++--.+- ..+-.|...|+...|..+++...
T Consensus 176 ~~~~~~~~~~e~dlf~~--------------RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 176 LCQVDDIEDSTVAEFFS--------------RLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHTTCCCHHHHHHHHH--------------HHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHhcCCCCcchHHHHHH--------------HHHHHHHHhcCHHHHHHHHHHHH
Confidence 444 54444332222 23455667888888888887664
No 285
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=40.23 E-value=1.4e+02 Score=26.39 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 006615 205 PNSRTYTVMIEHLVNLGKLDSALEVFSA 232 (638)
Q Consensus 205 p~~~ty~~li~~~~~~g~~~~A~~~~~~ 232 (638)
++...-...+..+.+.|+-++|.++|=+
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 3444455555666666777776666644
No 286
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=39.26 E-value=84 Score=27.26 Aligned_cols=177 Identities=11% Similarity=0.007 Sum_probs=86.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCchH--hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCCh
Q 006615 111 VLAKSQRNHELKTLIGDISSSKFLNVSV--NFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKN 188 (638)
Q Consensus 111 ~~~~~~~~~~a~~l~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 188 (638)
..++.|+.+..+.+++ .|..++.. .....+...++.|+.+-+..+++.-.......+...+ +.+...+..|+.
T Consensus 15 ~A~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~-t~L~~A~~~~~~ 89 (240)
T 3eu9_A 15 KATQYGIYERCRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNS-TPLHWATRQGHL 89 (240)
T ss_dssp HHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTB-CHHHHHHHHTCH
T ss_pred HHHHcCChHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCC-ChhHHHHHcCCH
Confidence 3466788776666655 33332211 1223566677888887666555432211111111122 334445566776
Q ss_pred HHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHH
Q 006615 189 FEAVETFRQVIDEGAIPNSRT--YTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLN 266 (638)
Q Consensus 189 ~~A~~~~~~m~~~g~~p~~~t--y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 266 (638)
+- ++.+.+.|..|+... -.+.+...+..|+.+-+..+++.-.... ..+..-.+.+..+..+ +...+..+++
T Consensus 90 ~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~g~t~l~~a~~~-~~~~~~~~~L- 162 (240)
T 3eu9_A 90 SM----VVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD-MMDQNGMTPLMWAAYR-THSVDPTRLL- 162 (240)
T ss_dssp HH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHH-CCSSTTHHHH-
T ss_pred HH----HHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcc-ccCCCCCcHHHHHHHh-CChHHHHHHH-
Confidence 54 444445565554321 1234455667788876666665422111 1122233444444433 3333333333
Q ss_pred HHHhCCCCCCHH---H-HHHHHHHHHcCChHHHHHHHHH
Q 006615 267 EMRDDGKFPGRA---M-RVALERMQEMGFIQGANEFLRE 301 (638)
Q Consensus 267 ~m~~~g~~p~~~---~-~~ll~~~~~~g~~~~a~~~~~~ 301 (638)
.+.|..++.. . .+.+...+..|+.+-+..+++.
T Consensus 163 --~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 199 (240)
T 3eu9_A 163 --LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA 199 (240)
T ss_dssp --HHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred --HhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 3344443321 1 2456666778888777666654
No 287
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=38.62 E-value=66 Score=29.35 Aligned_cols=53 Identities=17% Similarity=0.068 Sum_probs=26.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHH
Q 006615 212 VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNE 267 (638)
Q Consensus 212 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 267 (638)
+.+...+..|+.+-+..+++.-... .+...-.+.+...+..|..+-+.-+++.
T Consensus 131 t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 131 TSFYHAVMLNDVSIVSYFLSEIPST---FDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp SHHHHHHHTTCHHHHHHHHTTSCTT---CCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCcc---ccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 4455556667766555555442211 1221233344455566776655555554
No 288
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=38.40 E-value=1.2e+02 Score=24.40 Aligned_cols=62 Identities=10% Similarity=0.101 Sum_probs=35.9
Q ss_pred HHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 006615 161 NEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223 (638)
Q Consensus 161 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 223 (638)
+.+.+.|+++ +.--..++..+...+..-.|.++++.+.+.+...+..|.--.|+.+...|-+
T Consensus 16 ~~l~~~g~r~-T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKN-SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--C-HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCC-CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3455566554 4445556666666666667777777777665555555555555556655543
No 289
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=35.66 E-value=49 Score=26.50 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=8.7
Q ss_pred HHhcCChHHHHHHHHH
Q 006615 112 LAKSQRNHELKTLIGD 127 (638)
Q Consensus 112 ~~~~~~~~~a~~l~~~ 127 (638)
.++.|+.+.+..+++.
T Consensus 9 A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 9 AAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHh
Confidence 3455566655555554
No 290
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=34.95 E-value=1.2e+02 Score=26.50 Aligned_cols=68 Identities=6% Similarity=0.108 Sum_probs=50.8
Q ss_pred chhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcc-hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 006615 476 KFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPD-VQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549 (638)
Q Consensus 476 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~ 549 (638)
+|.....|-..+.. .+++..+|..|...|+--. ..-|......+...|++.+|.++|+.-++.+-+|-
T Consensus 116 D~RyLklWl~Ya~~------~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 116 DVRYLRIWMQYVNY------IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp CHHHHHHHHHHHTT------CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CHHHHHHHHHHHHc------cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 44444555555442 3578899999999887554 45577778888899999999999999888877764
No 291
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=34.66 E-value=60 Score=26.78 Aligned_cols=68 Identities=10% Similarity=0.087 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHcCCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCchHhHHHHHHHHHhcC
Q 006615 83 DSALSIMEALKSNPNFSHNQSTLHALATVLAKSQRNHELKTLIGDISSS--KFLNVSVNFMNLMQWYSTSG 151 (638)
Q Consensus 83 ~~Al~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~--~~~~~~~~~~~ll~~~~~~g 151 (638)
+.+++-++...+..|.+.+. .-..++..+...+..-.|.++++.+.+. +...+..|--.-++.+...|
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 34444444433333454443 3334455555555555555555555544 33333333333444455554
No 292
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=33.90 E-value=1.9e+02 Score=23.47 Aligned_cols=50 Identities=12% Similarity=0.030 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006615 156 VLSTWNEYRQRAKLLS-TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP 205 (638)
Q Consensus 156 A~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 205 (638)
+.++|..|...|+-.. ..-|-.....+-..|++.+|.++|+.-.+.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 6666666666654332 2335555555666666666666666666665555
No 293
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=33.49 E-value=2.9e+02 Score=25.49 Aligned_cols=49 Identities=16% Similarity=0.121 Sum_probs=28.7
Q ss_pred HccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 006615 491 TKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVEPDA 550 (638)
Q Consensus 491 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~ 550 (638)
++.|+.+ +.+-+.+.|..+|..+ . +...++.|+.+ +.+.+.++|-.||.
T Consensus 281 ~~~g~~~----iv~~Ll~~GAd~n~~~--~-L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 281 VELKLKK----IAELLCKRGASTDCGD--L-VMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHTTCHH----HHHHHHTTSCSSTTCC--H-HHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHcCCHH----HHHHHHHCCCCCCCCC--H-HHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 4456544 4455667888888765 3 33344556653 55667778877764
No 294
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=33.29 E-value=1.5e+02 Score=23.74 Aligned_cols=58 Identities=5% Similarity=0.029 Sum_probs=25.2
Q ss_pred HHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 006615 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG 221 (638)
Q Consensus 163 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 221 (638)
+.+.|++++ ..--.++..+...+..-.|.++++.+.+.+...+..|.--.|+.+...|
T Consensus 13 l~~~g~r~T-~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRIT-PQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCC-HHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 344444432 2233344444444444455555555555444344444333344444444
No 295
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=33.21 E-value=1.6e+02 Score=24.63 Aligned_cols=64 Identities=6% Similarity=0.021 Sum_probs=28.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH---hHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCC
Q 006615 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTE---SYNIVMSVYAK-TGKNFEAVETFRQVIDEGAIPN 206 (638)
Q Consensus 143 ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~---~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~ 206 (638)
.+...+..|+.+.-.++.+.+.+.|..++.. -++.|.-++.. ..+.....++.+.+.+.|..+|
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence 3344445555554455555555555444332 12233222221 1223334455555555555544
No 296
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=33.01 E-value=58 Score=24.08 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHH
Q 006615 151 GDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAV 192 (638)
Q Consensus 151 g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 192 (638)
...+.|.++++.+..+| ..+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888877 567888888887666655443
No 297
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=32.70 E-value=1.7e+02 Score=25.08 Aligned_cols=20 Identities=10% Similarity=0.052 Sum_probs=11.0
Q ss_pred HHHHHHHHcCChHHHHHHHH
Q 006615 281 VALERMQEMGFIQGANEFLR 300 (638)
Q Consensus 281 ~ll~~~~~~g~~~~a~~~~~ 300 (638)
+.+...+..|+.+-+.-+++
T Consensus 174 t~L~~A~~~~~~~~v~~Ll~ 193 (231)
T 3aji_A 174 TPLHLACDEERVEEAKFLVT 193 (231)
T ss_dssp CHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHH
Confidence 34555556666665555544
No 298
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=32.31 E-value=1.3e+02 Score=21.81 Aligned_cols=59 Identities=12% Similarity=0.111 Sum_probs=34.8
Q ss_pred HHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChH
Q 006615 123 TLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNF 189 (638)
Q Consensus 123 ~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 189 (638)
.+++.+.+.|+-.... +..+.. .....+.|..+++.+..+| ..+|..++.++.+.+...
T Consensus 26 ~lld~L~~~~vlt~~~-~e~I~~---~~t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 26 YIMDHMISDGFLTISE-EEKVRN---EPTQQQRAAMLIKMILKKD----NDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp HHHHHHHHHTSSCHHH-HHHHHT---SSSHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHCCCCCHHH-HHHHHc---CCChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcCHHH
Confidence 4555565555433222 222221 3456677777777777777 677777777777766543
No 299
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.03 E-value=2.4e+02 Score=28.44 Aligned_cols=114 Identities=15% Similarity=0.045 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHH-------HHHHccCCHHHHHHHHHHHHhCCCCCCHhh
Q 006615 480 MLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLM-------YHFALQGDEKIVQKLFSMVRQNGVEPDAYM 552 (638)
Q Consensus 480 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li-------~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~ 552 (638)
...+|.++..|...+.++.|..+..... ++.+..+-+-.+ +.+.-.+++.+|.+.+....+. ..++...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk-ap~~~~a 306 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE---YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK-APHNSKS 306 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC---SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS-CSCSSSC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc---CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCcchhh
Q ss_pred HHHHHHHHHHH---------------hhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 006615 553 FKVLIQAYCKY---------------LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598 (638)
Q Consensus 553 ~~~li~~~~~~---------------m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 598 (638)
....+.++-.. +...+++.....|..|..++ +.|++++-.++++.
T Consensus 307 ~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~ 366 (523)
T 4b4t_S 307 LGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITK 366 (523)
T ss_dssp SHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhHHhhcCCCCChHHhhchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHH
No 300
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=31.94 E-value=47 Score=28.82 Aligned_cols=79 Identities=8% Similarity=-0.041 Sum_probs=38.1
Q ss_pred HHHHHHcCCHHHHHHHHHhcccCCCccC---HhHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCH---HHHHHHHHH
Q 006615 214 IEHLVNLGKLDSALEVFSALPLMRIKRT---SKQYLILVEGFVGVERFDEAKSLLNEMRDDG-KFPGR---AMRVALERM 286 (638)
Q Consensus 214 i~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~---~~~~ll~~~ 286 (638)
+...+..|+.+-+..+++. |..++ ..-.+ .+...+..|+.+- ++.+.+.| ..++. .-.+.+...
T Consensus 111 L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t-~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~d~~g~t~L~~A 181 (228)
T 2dzn_A 111 LHLAVGKKWFEVSQFLIEN----GASVRIKDKFNQI-PLHRAASVGSLKL----IELLCGLGKSAVNWQDKQGWTPLFHA 181 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHT----TCCSCCCCTTSCC-HHHHHHHTTCHHH----HHHHHTTTCCCSCCCCTTSCCHHHHH
T ss_pred HHHHHHcCCHhHHHHHHHc----CCCccccCCCCCC-HHHHHHHcCCHHH----HHHHHhcCcccccCcCCCCCCHHHHH
Confidence 3444566776655555543 32222 11222 2334445566543 33333444 32221 112456666
Q ss_pred HHcCChHHHHHHHHH
Q 006615 287 QEMGFIQGANEFLRE 301 (638)
Q Consensus 287 ~~~g~~~~a~~~~~~ 301 (638)
+..|+.+-+..++++
T Consensus 182 ~~~~~~~~v~~Ll~~ 196 (228)
T 2dzn_A 182 LAEGHGDAAVLLVEK 196 (228)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHh
Confidence 677887777777644
No 301
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=31.53 E-value=1.2e+02 Score=24.02 Aligned_cols=60 Identities=8% Similarity=0.191 Sum_probs=34.0
Q ss_pred HHhcCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 006615 163 YRQRAKLLSTESYNIVMSVYAKTG-KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223 (638)
Q Consensus 163 m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 223 (638)
+.+.|++++ ..--.++..+...+ ..-.|.++++.+.+.+...+..|.---++.+.+.|-+
T Consensus 9 l~~~g~r~T-~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVT-LPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCC-HHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCC-HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 455565553 33444555555555 5666777777777765555555555555556555543
No 302
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=31.51 E-value=2.4e+02 Score=23.84 Aligned_cols=154 Identities=11% Similarity=0.018 Sum_probs=89.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 006615 100 HNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVM 179 (638)
Q Consensus 100 ~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li 179 (638)
++...-...+..++..+..+....+.+.+ . .++..+-...+.++.+.|+.+....+. ++.. .+|...-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l-~---~~~~~vr~~a~~aL~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKAL-K---DEDAWVRRAAADALGQIGDERAVEPLI-KALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHT-T---CSCHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHH-c---CCCHHHHHHHHHHHHhhCCHHHHHHHH-HHHc---CCCHHHHHHHH
Confidence 34555556666677666644443444333 2 245555556677777777643333333 3332 24566667777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHH
Q 006615 180 SVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259 (638)
Q Consensus 180 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 259 (638)
.++.+.++.+ +...+.++.+ .|+...-...+.++.+.|+.+....+...+ + .+|..+-...+.++.+.+. .
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l-~---d~~~~vr~~a~~aL~~~~~-~ 173 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDERAVEPLIKAL-K---DEDGWVRQSAADALGEIGG-E 173 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHT-T---CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-c---CCCHHHHHHHHHHHHHhCc-h
Confidence 7777777643 4445555554 367777777778888887754443333333 3 4666666777777777776 4
Q ss_pred HHHHHHHHHHh
Q 006615 260 EAKSLLNEMRD 270 (638)
Q Consensus 260 ~A~~l~~~m~~ 270 (638)
++...+.++.+
T Consensus 174 ~~~~~L~~~l~ 184 (211)
T 3ltm_A 174 RVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 55555555554
No 303
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=30.79 E-value=4.7e+02 Score=27.08 Aligned_cols=115 Identities=10% Similarity=-0.069 Sum_probs=54.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCCh
Q 006615 421 HVELVDRLIAKLRSDGMRLPFSTI----RLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKRD 496 (638)
Q Consensus 421 ~~~~a~~l~~~m~~~g~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 496 (638)
+.+.|...+........ .+.... ..+.......+...++...+...... ..... ..-|.+- ...+.|+.
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~e~~~r--~Alr~~d~ 301 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTS-LIERRVR--MALGTGDR 301 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHH-HHHHHHH--HHHHHTCH
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChH-HHHHHHH--HHHHCCCH
Confidence 66777777777654432 233222 22222333344244455555543221 11111 1233332 23355777
Q ss_pred HHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006615 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQ 543 (638)
Q Consensus 497 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~ 543 (638)
+.|.+.|+.|...... ...-.-=+-+++...|+.++|..+|+.+.+
T Consensus 302 ~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 302 RGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7777777776543111 122122234455666777777777777653
No 304
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=30.47 E-value=1.7e+02 Score=23.71 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=11.3
Q ss_pred HHHHHHccCChHHHHHHHHHHH
Q 006615 486 LLRTLTKCKRDFDAINVLEEMI 507 (638)
Q Consensus 486 li~~~~~~g~~~~A~~l~~~m~ 507 (638)
-+..+++.|+.+.+..++..+.
T Consensus 99 ~lE~~~~~~~~~~~~~~l~~l~ 120 (153)
T 3us6_A 99 AFRNFCEEQNIDACRRCLQQVK 120 (153)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555444
No 305
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=30.37 E-value=1.3e+02 Score=24.10 Aligned_cols=53 Identities=4% Similarity=0.088 Sum_probs=23.4
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615 97 NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG 151 (638)
Q Consensus 97 ~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g 151 (638)
|.+++. .-..++..+...+ .-.|.++++.+.+.+...+..|--.-++.+...|
T Consensus 14 g~r~T~-qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 14 GYRLTP-QRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp TCCCCH-HHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCcCH-HHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 444443 2233344444333 4455555555555444344444333444444444
No 306
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=30.02 E-value=2.6e+02 Score=23.89 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=21.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 006615 185 TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG 221 (638)
Q Consensus 185 ~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 221 (638)
-.+.+.|+-.+-+|.+.| .|.-..-..++-+.-..|
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 466777777777777776 555444444444444444
No 307
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.71 E-value=1.3e+02 Score=24.15 Aligned_cols=44 Identities=11% Similarity=0.091 Sum_probs=18.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 006615 108 LATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSG 151 (638)
Q Consensus 108 li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g 151 (638)
++..+...+..-.|.++++.+.+.+...+..|-..-++.+...|
T Consensus 27 Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 27 ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33333333334444455555544433333333333334444443
No 308
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.52 E-value=2.3e+02 Score=23.08 Aligned_cols=50 Identities=14% Similarity=0.065 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 006615 118 NHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKL 169 (638)
Q Consensus 118 ~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~ 169 (638)
.+....+++.+.+.|+..|..--...++...+.| -....+-.++.++|+.
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~ 95 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGIS 95 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCC
Confidence 3455566666666666655554445555554433 1234566666677754
No 309
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=29.43 E-value=1.9e+02 Score=24.75 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=11.7
Q ss_pred HHHHHHHHcCChHHHHHHHH
Q 006615 281 VALERMQEMGFIQGANEFLR 300 (638)
Q Consensus 281 ~ll~~~~~~g~~~~a~~~~~ 300 (638)
+.+...+..|+.+-+..+++
T Consensus 141 t~L~~A~~~~~~~~v~~Ll~ 160 (231)
T 3aji_A 141 TAMHRAAAKGNLKMVHILLF 160 (231)
T ss_dssp CHHHHHHHHTCHHHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHh
Confidence 34555566677666555554
No 310
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=28.29 E-value=1.6e+02 Score=21.73 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCC
Q 006615 497 FDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD 530 (638)
Q Consensus 497 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 530 (638)
-.|.++.++....|+.|+..+..-++.-|...+-
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~l 59 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ 59 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 3577888888888888888888877777776664
No 311
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=27.85 E-value=2.8e+02 Score=26.07 Aligned_cols=148 Identities=14% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHc-cCChHHHHHHHHHHHhCCCCcchhhHHHHH
Q 006615 444 IRLIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTK-CKRDFDAINVLEEMIFSGIVPDVQTFSGLM 522 (638)
Q Consensus 444 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 522 (638)
...++.-|...|+.++|.+.++++. .+..........+..++-+ ...-+.+..++..+.+.|+-+.......+-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~-----~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~ 88 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA-----SPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLY 88 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC-----CGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC-----CcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_pred HHHHccCCH----HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 006615 523 YHFALQGDE----KIVQKLFSMVRQNGVEPDAYMFKVLIQAYCKYLSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEER 598 (638)
Q Consensus 523 ~~~~~~g~~----~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 598 (638)
+.+....+. ..|...+..+...-+.-+..+...++....+.+.+.| ........++..+.+....+.+.++|..
T Consensus 89 ~~~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g--~~~~fl~~vl~~l~~~~g~~~l~~~~~~ 166 (339)
T 1ug3_A 89 EILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLG--KAASLLLEILGLLCKSMGPKKVGTLWRE 166 (339)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHT--CHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHcCHHHHHHHHHH
No 312
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=27.75 E-value=1.1e+02 Score=24.54 Aligned_cols=58 Identities=21% Similarity=0.177 Sum_probs=27.5
Q ss_pred HHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 006615 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK 222 (638)
Q Consensus 163 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~ 222 (638)
+.+.|++++. .-..++..+...+ .-.|.++++.+.+.+...+..|.---|+.+.+.|-
T Consensus 10 L~~~g~r~T~-qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 10 LRQRGYRLTP-QRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHTTTCCCCH-HHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCH-HHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 4444554422 2333444444444 44566666666555544454444444444544443
No 313
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.30 E-value=1.6e+02 Score=23.68 Aligned_cols=61 Identities=16% Similarity=0.035 Sum_probs=34.0
Q ss_pred HHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC
Q 006615 126 GDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGK 187 (638)
Q Consensus 126 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 187 (638)
+.+.+.|..++.. -..++..+...+..-.|.++++.+.+.+...+..|----++.+.+.|-
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3455566655544 334556666666666777777777766544455554444555555553
No 314
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=25.90 E-value=1.3e+02 Score=24.19 Aligned_cols=61 Identities=13% Similarity=0.201 Sum_probs=34.3
Q ss_pred HHHhcCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 006615 162 EYRQRAKLLSTESYNIVMSVYAKTG-KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223 (638)
Q Consensus 162 ~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 223 (638)
.|.+.|++++ ..--.++..+...+ ..-.|.++++.+.+.+...+..|.---|+.+...|-+
T Consensus 7 ~l~~~g~r~T-~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVT-LPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCC-HHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCC-HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3555665553 23344555555554 5556777777777665555555555555556655543
No 315
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=25.69 E-value=4.9e+02 Score=25.58 Aligned_cols=37 Identities=14% Similarity=-0.107 Sum_probs=19.1
Q ss_pred cCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccC
Q 006615 220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVE 256 (638)
Q Consensus 220 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 256 (638)
.++.+.|..++.+|.+.|..|....-..++.+.-.-|
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 3556666666666666555554444444444444333
No 316
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=25.65 E-value=2.8e+02 Score=22.81 Aligned_cols=50 Identities=18% Similarity=0.159 Sum_probs=23.0
Q ss_pred HHHHHHHHHhcCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006615 156 VLSTWNEYRQRAKLLS-TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP 205 (638)
Q Consensus 156 A~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 205 (638)
+..+|..|..+|+-.. ..-|-.....+-..|++.+|.++|..-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4445555554443322 2223444444444555555555555555544444
No 317
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=25.21 E-value=4.3e+02 Score=24.78 Aligned_cols=119 Identities=13% Similarity=0.052 Sum_probs=58.3
Q ss_pred CCcCCHHHHHHHHHHHHhcCChH-HHHHHHHHHH----HcC--CCCCHHHHHHHHHHHcccCCHHHHHHHHHhchhccCC
Q 006615 401 GYTHDVYALEKMLTILARHGHVE-LVDRLIAKLR----SDG--MRLPFSTIRLIIDFYGISKKADAALKAFHDDRTLCGP 473 (638)
Q Consensus 401 ~~~p~~~~~~~li~~~~~~g~~~-~a~~l~~~m~----~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 473 (638)
++++|......++..+.....-+ .=.++.+.++ +.| ..-|+.....+-..|.+.+++.+|...|-.
T Consensus 89 ~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il------- 161 (336)
T 3lpz_A 89 GQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL------- 161 (336)
T ss_dssp TCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT-------
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh-------
Confidence 44555555555555555444311 1122222222 222 233666777777788888888888777742
Q ss_pred CcchhHHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 006615 474 ISKFKLMLLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVR 542 (638)
Q Consensus 474 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~ 542 (638)
..++. +..|..++.-+.+.+... .+|.+.-..++. |.-.++...|..+++...
T Consensus 162 g~~~s-~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 162 GTKES-PEVLARMEYEWYKQDESH--------------TAPLYCARAVLP-YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp SCTTH-HHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHH
T ss_pred cCCch-HHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHH
Confidence 11211 134544444333332211 123333333333 344577777777665544
No 318
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=25.02 E-value=1.9e+02 Score=26.07 Aligned_cols=143 Identities=8% Similarity=-0.050 Sum_probs=76.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHc
Q 006615 143 LMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRT--YTVMIEHLVNL 220 (638)
Q Consensus 143 ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--y~~li~~~~~~ 220 (638)
.+...+..|+.+-+..+++. |..++...-.+.+...+..|+.+-+.. +.+.|..++... -.+.+...+..
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v~~----Ll~~ga~~~~~d~~g~t~L~~A~~~ 105 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTKIVKI----LLFSGLDDSQFDDKGNTALYYAVDS 105 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCHHHHH----HHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHHHHHH----HHHCCCCCCCcCCCCCcHHHHHHHc
Confidence 34445667777766555543 332222222234445566677654433 344555544221 12334455677
Q ss_pred CCHHHHHHHHHhcccCCCccCH---hHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHcCChHHH
Q 006615 221 GKLDSALEVFSALPLMRIKRTS---KQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGR--AMRVALERMQEMGFIQGA 295 (638)
Q Consensus 221 g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~~~~ll~~~~~~g~~~~a 295 (638)
|+.+-+.-+++. |..++. .-|.+.+...+..|+.+-+.. +.+.|..+.. .-.+.+...+..|..+-+
T Consensus 106 g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~----Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v 177 (285)
T 3kea_A 106 GNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSY----FLSEIPSTFDLAILLSCIHITIKNGHVDMM 177 (285)
T ss_dssp TCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHH----HHTTSCTTCCCSTHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHHHH----HHhCCCccccccCCccHHHHHHHcChHHHH
Confidence 888777666665 333332 222345555666777654443 4444544422 234667777788988877
Q ss_pred HHHHHH
Q 006615 296 NEFLRE 301 (638)
Q Consensus 296 ~~~~~~ 301 (638)
.-+++.
T Consensus 178 ~~Ll~~ 183 (285)
T 3kea_A 178 ILLLDY 183 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 777765
No 319
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=24.82 E-value=1.9e+02 Score=27.11 Aligned_cols=47 Identities=21% Similarity=0.254 Sum_probs=41.3
Q ss_pred HHHHHHHhCCCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 006615 501 NVLEEMIFSGIVPDVQTFSGLMYHFALQGDEKIVQKLFSMVRQNGVE 547 (638)
Q Consensus 501 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~~~~ 547 (638)
++++.+.+.|+.|...++.-++..|++.=.++.+.++|+.+...|..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~ 255 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTE 255 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcH
Confidence 56677788899999999999999999988899999999999988754
No 320
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=23.65 E-value=1.4e+02 Score=23.92 Aligned_cols=9 Identities=22% Similarity=0.453 Sum_probs=3.7
Q ss_pred HHcCCHHHH
Q 006615 218 VNLGKLDSA 226 (638)
Q Consensus 218 ~~~g~~~~A 226 (638)
+..|+.+-+
T Consensus 83 ~~~~~~~~v 91 (165)
T 3twr_A 83 CSYGHYEVA 91 (165)
T ss_dssp HHTTCHHHH
T ss_pred HHcCcHHHH
Confidence 334444433
No 321
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.65 E-value=2e+02 Score=23.59 Aligned_cols=59 Identities=8% Similarity=0.085 Sum_probs=33.3
Q ss_pred HHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCC
Q 006615 163 YRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDE--GAIPNSRTYTVMIEHLVNLGK 222 (638)
Q Consensus 163 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~ty~~li~~~~~~g~ 222 (638)
+.+.|+++ +.--..++..+...+..-.|.++++.+.+. +...+..|.---|+.+.+.|-
T Consensus 24 L~~~g~r~-T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 24 LRQGGLKY-TKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHTCCC-CHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCC-CHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 44456555 334455566666666666677777777665 544555444444455555554
No 322
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.52 E-value=1.9e+02 Score=20.07 Aligned_cols=58 Identities=12% Similarity=0.222 Sum_probs=26.8
Q ss_pred HHhcCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 006615 163 YRQRAKLLSTESYNIVMSVYAKTG-KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG 221 (638)
Q Consensus 163 m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 221 (638)
|.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|..-.++.+.+.|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 444454443322 33444444433 34445555555555544444444444445454444
No 323
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=23.50 E-value=3.2e+02 Score=23.28 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=21.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 006615 185 TGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLG 221 (638)
Q Consensus 185 ~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 221 (638)
-.+.+.|+-.+-+|.+.|-.|.-..-..++-+.-..|
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 4667777777777777665555444444444443333
No 324
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=23.16 E-value=5.1e+02 Score=24.90 Aligned_cols=50 Identities=18% Similarity=0.277 Sum_probs=23.1
Q ss_pred HccCChHHHHHHHHHHHhCCCCcchhh---HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 006615 491 TKCKRDFDAINVLEEMIFSGIVPDVQT---FSGLMYHFALQGDEKIVQKLFSMVRQNGVEPD 549 (638)
Q Consensus 491 ~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~ 549 (638)
+..|+.+ +.+.+.+.|..+|... ++.|.. .+..|+.+ +.+.+.+.|..|+
T Consensus 319 ~~~g~~~----~v~~Ll~~gad~n~~~~~g~t~L~~-A~~~g~~~----iv~~Ll~~ga~~~ 371 (437)
T 1n11_A 319 SHYGNIK----LVKFLLQHQADVNAKTKLGYSPLHQ-AAQQGHTD----IVTLLLKNGASPN 371 (437)
T ss_dssp HHSSCSH----HHHHHHHTTCCTTCCCTTSCCHHHH-HHHTTCHH----HHHHHHHTTCCSC
T ss_pred HHcCcHH----HHHHHHhcCCCCCCCCCCCCCHHHH-HHHCChHH----HHHHHHHCcCCCC
Confidence 3455544 3334445565554332 233333 33445543 4445555666665
No 325
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=22.98 E-value=3.7e+02 Score=23.26 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhcCCCCCHH--hH-----HHHHHHHHhcCChHHHHHHHHHHHH
Q 006615 153 LELVLSTWNEYRQRAKLLSTE--SY-----NIVMSVYAKTGKNFEAVETFRQVID 200 (638)
Q Consensus 153 ~~~A~~l~~~m~~~~~~p~~~--~~-----~~li~~~~~~g~~~~A~~~~~~m~~ 200 (638)
++.|+.+|+.+...-..++.. .- -..+-.|.++|.+++|.++|++...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 566777777666543111111 01 1223345566666666666666554
No 326
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=22.87 E-value=3.2e+02 Score=22.51 Aligned_cols=11 Identities=18% Similarity=0.190 Sum_probs=4.3
Q ss_pred hcCChHHHHHH
Q 006615 114 KSQRNHELKTL 124 (638)
Q Consensus 114 ~~~~~~~a~~l 124 (638)
..|+.+-+..+
T Consensus 81 ~~~~~~~~~~L 91 (201)
T 3hra_A 81 AQGRTEILAYM 91 (201)
T ss_dssp HTTCHHHHHHH
T ss_pred HcCCHHHHHHH
Confidence 33444433333
No 327
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=22.63 E-value=2e+02 Score=27.36 Aligned_cols=68 Identities=13% Similarity=0.190 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHhcccCCCccCHh
Q 006615 175 YNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGK--LDSALEVFSALPLMRIKRTSK 243 (638)
Q Consensus 175 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 243 (638)
.+.+|.-|...|+.++|.+.++++..-.+. -..+...+..+.-+.++ .+.+.+++..+...|+-+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 456667777777777777777777532111 13334444444443332 345666776666555443333
No 328
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=22.62 E-value=2.3e+02 Score=24.15 Aligned_cols=147 Identities=10% Similarity=-0.001 Sum_probs=66.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-----HHHHHHHHH
Q 006615 144 MQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRT-----YTVMIEHLV 218 (638)
Q Consensus 144 l~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-----y~~li~~~~ 218 (638)
+...++.|+.+.+..+++.-.......|..-++.| ...+..|+.+- ++.+.+.|-.++... -.+.+...+
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~----v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPL-HWSVSFQAHEI----TSFLLSKMENVNLDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHH-HHHHHTTCHHH----HHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHH-HHHHHcCCHHH----HHHHHhccccccccccCCCCCCCHHHHHH
Confidence 34445666666666555543322111222223333 33344555543 333344442222211 123344455
Q ss_pred HcCCHHHHHHHHHhcccCCC-ccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHcCChHH
Q 006615 219 NLGKLDSALEVFSALPLMRI-KRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRA---MRVALERMQEMGFIQG 294 (638)
Q Consensus 219 ~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---~~~ll~~~~~~g~~~~ 294 (638)
..|+.+-+..+++.-....+ ..|..-++. +...+..|+.+-+..+ .+.|..++.. -.+.+...+..|+.+-
T Consensus 81 ~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~L----l~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 155 (228)
T 2dzn_A 81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTC-LHLAVGKKWFEVSQFL----IENGASVRIKDKFNQIPLHRAASVGSLKL 155 (228)
T ss_dssp HHCCHHHHHHHHSSSSCCCTTCCCTTCCCH-HHHHHHTTCHHHHHHH----HHTTCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred HcCCHHHHHHHHhCCCCcccccCCcCCCCH-HHHHHHcCCHhHHHHH----HHcCCCccccCCCCCCHHHHHHHcCCHHH
Confidence 66777766665554211000 112222233 3344456766544433 4446555432 1245666677888776
Q ss_pred HHHHHH
Q 006615 295 ANEFLR 300 (638)
Q Consensus 295 a~~~~~ 300 (638)
+..+++
T Consensus 156 v~~Ll~ 161 (228)
T 2dzn_A 156 IELLCG 161 (228)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 655554
No 329
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=22.54 E-value=3.3e+02 Score=22.56 Aligned_cols=56 Identities=5% Similarity=-0.064 Sum_probs=32.5
Q ss_pred ChHHHHHHHHHHHhCCCCcchhhH--H-HHHHHHHccCCH-HHHHHHHHHHHh-CCCCCCH
Q 006615 495 RDFDAINVLEEMIFSGIVPDVQTF--S-GLMYHFALQGDE-KIVQKLFSMVRQ-NGVEPDA 550 (638)
Q Consensus 495 ~~~~A~~l~~~m~~~g~~p~~~t~--~-~li~~~~~~g~~-~~a~~l~~~m~~-~~~~p~~ 550 (638)
......++.+-+.+.|..+|.... . +.+...+..|.. ..-..+++.+.+ .|..++.
T Consensus 89 ~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~ 149 (186)
T 3t8k_A 89 DITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI 149 (186)
T ss_dssp CHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTC
T ss_pred chhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcc
Confidence 344556777888888887765432 1 333333333333 345567777777 7776663
No 330
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=22.50 E-value=1.4e+02 Score=28.28 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=13.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHh
Q 006615 281 VALERMQEMGFIQGANEFLREM 302 (638)
Q Consensus 281 ~ll~~~~~~g~~~~a~~~~~~~ 302 (638)
+.+...+..|+.+-+..+++.-
T Consensus 175 t~L~~A~~~g~~~~v~~Ll~~g 196 (364)
T 3ljn_A 175 TPLMRAMEFRNREALDLMMDTV 196 (364)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHC
T ss_pred CHHHHHHHcCCHHHHHHHHhcc
Confidence 4455556777777666666543
No 331
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=22.46 E-value=5e+02 Score=24.59 Aligned_cols=106 Identities=13% Similarity=0.188 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCcchhhHHHHHHHHHccCC--HHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 006615 481 LLYSSLLRTLTKCKRDFDAINVLEEMIFSGIVPDVQTFSGLMYHFALQGD--EKIVQKLFSMVRQNGVEPDAYMFKVLIQ 558 (638)
Q Consensus 481 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~--~~~a~~l~~~m~~~~~~p~~~~~~~li~ 558 (638)
...+.++.-|...|+.++|.+.++++....+.+ .+....+..++-+.++ .+...+++..+...|+-+. ..+..
T Consensus 218 kki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~----~q~~~ 292 (358)
T 3eiq_C 218 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI----DQMKR 292 (358)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH----HHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH----HHHHH
Confidence 456888999999999999999999997432222 3445566666666543 3568888888888775544 34444
Q ss_pred HHHHH---hhhCCC-CCCHHHH-HHHHHHHhccCcHHH
Q 006615 559 AYCKY---LSNSNL-MPDAATK-ELLKKSLWKEGRRKE 591 (638)
Q Consensus 559 ~~~~~---m~~~g~-~p~~~~~-~~li~~~~~~g~~~~ 591 (638)
|+.+. +.+..+ .|.+..| ..++.-+...|-+..
T Consensus 293 Gf~~vl~~ldDl~lDiP~A~~~la~~varai~~g~l~~ 330 (358)
T 3eiq_C 293 GYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISK 330 (358)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHHHHhccHhhcccccHHHHHHHHHHHHHHCCCCCH
Confidence 44444 211111 3555544 444444444444433
No 332
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=22.42 E-value=3.5e+02 Score=23.09 Aligned_cols=224 Identities=7% Similarity=-0.049 Sum_probs=0.0
Q ss_pred cCCchhhHHHHhchhhhHHHHHHHHhcCCCCcch--hhhccCCCCHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCCChh
Q 006615 26 RAPFTNKLALYLRRAQLIDSIRLAVRSNSSNSLS--SLLNDRLLDPFIVTHALRSAPNADSALSIMEALKSNPNFSHNQS 103 (638)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~Al~~~~~~~~~~~~~~~~~ 103 (638)
.........++....+..+.++.+++........ .... .+...+..|+.+-+..+++.-. .......
T Consensus 7 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t--------~L~~A~~~~~~~~v~~Ll~~g~---~~~~~~~ 75 (237)
T 3b7b_A 7 EHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRT--------PLMEAAENNHLEAVKYLIKAGA---LVDPKDA 75 (237)
T ss_dssp SSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCC--------HHHHHHHTTCHHHHHHHHTTTC---CCCCCCT
T ss_pred ccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCC--------HHHHHHHhCCHHHHHHHHhCCC---CCCCCCC
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHH--HHHHH
Q 006615 104 TLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYN--IVMSV 181 (638)
Q Consensus 104 ~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~--~li~~ 181 (638)
.-...+...+..|+.+-+..+++.-...--..+....+.|..+..... .++++.+.+.|..++..... +.+..
T Consensus 76 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~g~t~L~~ 150 (237)
T 3b7b_A 76 EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH-----VDLVKLLLSKGSDINIRDNEENICLHW 150 (237)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCCCccCCCCCCHHHH
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHH
Q 006615 182 YAKTGKNFEAVETFRQVIDEGAIPNSRTYT--VMIEHLVNLGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFD 259 (638)
Q Consensus 182 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 259 (638)
.++.|+.+ +++.+.+.|..++..... +.+...++.|+.+-+.-+++. ...+......-.+-+...+..|+.+
T Consensus 151 A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--gad~~~~d~~g~t~l~~A~~~~~~~ 224 (237)
T 3b7b_A 151 AAFSGCVD----IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR--DSDVTLKNKEGETPLQCASLNSQVW 224 (237)
T ss_dssp HHHHCCHH----HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT--TCCTTCCCTTSCCHHHHSCTTCHHH
T ss_pred HHHCCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHc--CCCCCccCCCCCCHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhC
Q 006615 260 EAKSLLNEMRDD 271 (638)
Q Consensus 260 ~A~~l~~~m~~~ 271 (638)
.+.++.+.+.+.
T Consensus 225 ~~~~l~~~l~ds 236 (237)
T 3b7b_A 225 SALQMSKALQDS 236 (237)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHhhcc
No 333
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.31 E-value=1.8e+02 Score=22.90 Aligned_cols=58 Identities=5% Similarity=0.085 Sum_probs=26.1
Q ss_pred HHhCCCCCchHhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC
Q 006615 128 ISSSKFLNVSVNFMNLMQWYSTSG-DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186 (638)
Q Consensus 128 ~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 186 (638)
+.+.|...+.. -..++..+...+ ..-.|.++++.+.+.+...+..|----++.+.+.|
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34445444443 223444444444 44455666666655543334444333344444444
No 334
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=22.30 E-value=1.3e+02 Score=23.90 Aligned_cols=147 Identities=16% Similarity=0.063 Sum_probs=73.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHH
Q 006615 143 LMQWYSTSGDLELVLSTWNEYRQRAK-LLSTESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRT--YTVMIEHLVN 219 (638)
Q Consensus 143 ll~~~~~~g~~~~A~~l~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--y~~li~~~~~ 219 (638)
.+...++.|+.+.+..+++. ....+ ..|..-++.| .. +..|+.+-+.. +.+.|..++... -.+.+...+.
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L-~~-~~~~~~~~v~~----Ll~~g~~~~~~~~~g~t~L~~A~~ 77 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTAL-QV-MMFGSTAIALE----LLKQGASPNVQDTSGTSPVHDAAR 77 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHH-HH-SCTTCHHHHHH----HHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHH-HH-HHcCCHHHHHH----HHHCCCCCCCcCCCCCCHHHHHHH
Confidence 45556788999988888887 31111 1223333334 33 67787664444 444555544221 1234455566
Q ss_pred cCCHHHHHHHHHhcccCCCccCHhHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCChHHHHHHH
Q 006615 220 LGKLDSALEVFSALPLMRIKRTSKQYLILVEGFVGVERFDEAKSLLNEMRDDGKFPGRAMRVALERMQEMGFIQGANEFL 299 (638)
Q Consensus 220 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ll~~~~~~g~~~~a~~~~ 299 (638)
.|+.+-+.-+++.-.... .+|..-++. +...+..|+.+-+.-+++. ..... .+..-.+.+...+..|+.+-+.-++
T Consensus 78 ~~~~~~v~~Ll~~g~~~~-~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~-~~~~~-~~~~g~t~l~~A~~~~~~~~v~~Ll 153 (156)
T 1bd8_A 78 TGFLDTLKVLVEHGADVN-VPDGTGALP-IHLAVQEGHTAVVSFLAAE-SDLHR-RDARGLTPLELALQRGAQDLVDILQ 153 (156)
T ss_dssp TTCHHHHHHHHHTTCCSC-CCCTTSCCH-HHHHHHHTCHHHHHHHHTT-SCTTC-CCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred cCcHHHHHHHHHcCCCCC-CcCCCCCcH-HHHHHHhChHHHHHHHHhc-cCCCC-cCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 788876666655322111 112222333 3444556776655555544 11111 1111124455556777776665554
Q ss_pred H
Q 006615 300 R 300 (638)
Q Consensus 300 ~ 300 (638)
+
T Consensus 154 ~ 154 (156)
T 1bd8_A 154 G 154 (156)
T ss_dssp T
T ss_pred h
Confidence 3
No 335
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=22.21 E-value=3.9e+02 Score=23.27 Aligned_cols=52 Identities=12% Similarity=0.049 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006615 154 ELVLSTWNEYRQRAKLLS-TESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIP 205 (638)
Q Consensus 154 ~~A~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 205 (638)
+++..+|..|...||--. ..-|-.....+-..|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 466678888877765433 3346666677777788888888888777776666
No 336
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=21.88 E-value=4.7e+02 Score=24.00 Aligned_cols=46 Identities=9% Similarity=0.060 Sum_probs=19.7
Q ss_pred hhhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCcccccceee
Q 006615 564 LSNSNLMPDAATKELLKKSLWKEGRRKEAAAVEERCEKINDVPSLALRGHIWA 616 (638)
Q Consensus 564 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~w~ 616 (638)
+.+.|-.+|..+ .+...++.|+.+ +++.+.+.|-.+...++..-|+
T Consensus 292 Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~~~p~~dw~ 337 (337)
T 4g8k_A 292 LCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDFHPPAEDWK 337 (337)
T ss_dssp HHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC----------
T ss_pred HHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCCCCCcccCC
Confidence 446666666543 233344566654 4555666665554444444463
No 337
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=21.81 E-value=4.1e+02 Score=23.41 Aligned_cols=184 Identities=13% Similarity=-0.006 Sum_probs=82.6
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCC-------chHhHHHHHHHHH--hcCCHHHHHHHHHHHHhc---------CCC-CCH
Q 006615 112 LAKSQRNHELKTLIGDISSSKFLN-------VSVNFMNLMQWYS--TSGDLELVLSTWNEYRQR---------AKL-LST 172 (638)
Q Consensus 112 ~~~~~~~~~a~~l~~~~~~~~~~~-------~~~~~~~ll~~~~--~~g~~~~A~~l~~~m~~~---------~~~-p~~ 172 (638)
.++.|+.+....+++...+.+... +..-++.|..+.. +.|+.+-+..+++.-... ++. .|.
T Consensus 20 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~ 99 (273)
T 2pnn_A 20 AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYY 99 (273)
T ss_dssp HHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTT
T ss_pred HHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccC
Confidence 345566666666666554433221 2222333433332 236666666666553221 111 122
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH----------------HHHHHHHHHHcCCHHHHHHHHHhcccC
Q 006615 173 ESYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRT----------------YTVMIEHLVNLGKLDSALEVFSALPLM 236 (638)
Q Consensus 173 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----------------y~~li~~~~~~g~~~~A~~~~~~m~~~ 236 (638)
.-++.|.. .+..|+.+-+.- +.+.|..++... -.+.+...+..|+.+-+.-+++.-. .
T Consensus 100 ~g~tpL~~-A~~~g~~~~v~~----Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~ 173 (273)
T 2pnn_A 100 KGQTALHI-AIERRNMTLVTL----LVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSW-Q 173 (273)
T ss_dssp TTCCHHHH-HHHTTCHHHHHH----HHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSS-C
T ss_pred CCCCHHHH-HHHcCCHHHHHH----HHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc-C
Confidence 23333333 345566554333 334455444322 2234455666788777766665210 2
Q ss_pred CCcc---CHhHHHHHHHHHHccCC--HH---HHHHHHHHHHhCCCCC----------CHHHHHHHHHHHHcCChHHHHHH
Q 006615 237 RIKR---TSKQYLILVEGFVGVER--FD---EAKSLLNEMRDDGKFP----------GRAMRVALERMQEMGFIQGANEF 298 (638)
Q Consensus 237 g~~p---~~~~~~~li~~~~~~g~--~~---~A~~l~~~m~~~g~~p----------~~~~~~ll~~~~~~g~~~~a~~~ 298 (638)
|..+ |..-++.|..+.. .|+ .+ ...++++.+.+.|..+ +..-.+.+...++.|+.+-+..+
T Consensus 174 gad~~~~d~~g~tpLh~A~~-~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~L 252 (273)
T 2pnn_A 174 PADISARDSVGNTVLHALVE-VADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYI 252 (273)
T ss_dssp CCCTTCCCTTSCCHHHHHHH-HCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCCceeeCCCCCcHHHHHHH-ccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHH
Confidence 2222 2222344443333 222 11 1123333333333222 21112456666778888877777
Q ss_pred HHHh
Q 006615 299 LREM 302 (638)
Q Consensus 299 ~~~~ 302 (638)
++.=
T Consensus 253 l~~g 256 (273)
T 2pnn_A 253 LQRE 256 (273)
T ss_dssp HHHH
T ss_pred HHCC
Confidence 7654
No 338
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=21.72 E-value=64 Score=21.26 Aligned_cols=29 Identities=21% Similarity=0.467 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006615 189 FEAVETFRQVIDEGAIPNSRTYTVMIEHL 217 (638)
Q Consensus 189 ~~A~~~~~~m~~~g~~p~~~ty~~li~~~ 217 (638)
++|.+.|.+|.+..-.+...||.-.|+..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45666666666543333445666666555
No 339
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=21.72 E-value=8.1e+02 Score=26.77 Aligned_cols=48 Identities=10% Similarity=0.111 Sum_probs=21.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006615 149 TSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTGKNFEAVETFRQVI 199 (638)
Q Consensus 149 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 199 (638)
+.|..++-..+++.+.... +..--..++.+++...+.+...++++...
T Consensus 738 ~~g~~~~~~~l~~~~~~~~---~~~ek~~ll~aL~~~~d~~~l~~~L~~~l 785 (909)
T 4fke_A 738 AQGGQDQWDFAWGQLQQAQ---LVNEADKLRSALACSNEVWLLNRYLGYTL 785 (909)
T ss_dssp HHSCHHHHHHHHHHHHHCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHccC---CHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 4444444444444444432 22333445555555555544444444443
No 340
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=21.68 E-value=8.1e+02 Score=26.76 Aligned_cols=154 Identities=9% Similarity=-0.009 Sum_probs=85.1
Q ss_pred HHHHHHcCCC---hhHHHHHHHHHHcCC---CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCchHhHHHHHH
Q 006615 72 VTHALRSAPN---ADSALSIMEALKSNP---NFSHNQSTLHALATVLAKSQRNHELKTLIGDISSSKFLNVSVNFMNLMQ 145 (638)
Q Consensus 72 ~~~~l~~~~~---~~~Al~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ll~ 145 (638)
++...|+.|. .+.|.+.|+.....+ .+.|| .-..+...-.+.|..++-..+++...+.. +..--..++.
T Consensus 692 ~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~d--lr~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll~ 766 (909)
T 4fke_A 692 AISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPN--LRSTIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLRS 766 (909)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTT--THHHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHH--HHHHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHHH
Confidence 5666777776 456888888766432 24555 33444444456788777777888877643 3333567888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC-CCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHc
Q 006615 146 WYSTSGDLELVLSTWNEYRQRA-KLLSTESYNIVMSVYAKTG-KNFEAVETFRQVID---EGAIPNSRTYTVMIEHLVNL 220 (638)
Q Consensus 146 ~~~~~g~~~~A~~l~~~m~~~~-~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~---~g~~p~~~ty~~li~~~~~~ 220 (638)
+++...+.....++++.....+ +++ .... .++.+.+.+. ..+.|++.+.+=-+ .....+..++..+|...+..
T Consensus 767 aL~~~~d~~~l~~~L~~~l~~~~ir~-qd~~-~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~ 844 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLNPDLIRK-QDAT-STINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRR 844 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTCTTTSCG-GGHH-HHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTT
T ss_pred HhCCCCCHHHHHHHHHHHhCCCCCch-hhHH-HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Confidence 8888889888888888776543 332 2233 3334444322 22344444433211 11223334556666655443
Q ss_pred C----CHHHHHHHHHh
Q 006615 221 G----KLDSALEVFSA 232 (638)
Q Consensus 221 g----~~~~A~~~~~~ 232 (638)
- ++++..++|+.
T Consensus 845 ~~t~~~~~~~~~f~~~ 860 (909)
T 4fke_A 845 FSSEFELQQLEQFKKN 860 (909)
T ss_dssp CCSHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHhh
Confidence 2 34444444443
No 341
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.50 E-value=2e+02 Score=19.88 Aligned_cols=58 Identities=3% Similarity=0.066 Sum_probs=23.5
Q ss_pred HHhCCCCCchHhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHhcC
Q 006615 128 ISSSKFLNVSVNFMNLMQWYSTSG-DLELVLSTWNEYRQRAKLLSTESYNIVMSVYAKTG 186 (638)
Q Consensus 128 ~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~~g 186 (638)
+.+.|+..+.. -..++..+...+ ..-.+.++++.+.+.+...+..|-.-.++.+.+.|
T Consensus 8 l~~~g~~~t~~-r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHH-HHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33444444333 223344443332 33344455555544433333444444444444433
No 342
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=21.35 E-value=3.9e+02 Score=24.91 Aligned_cols=16 Identities=13% Similarity=-0.041 Sum_probs=7.5
Q ss_pred HhcCChHHHHHHHHHH
Q 006615 183 AKTGKNFEAVETFRQV 198 (638)
Q Consensus 183 ~~~g~~~~A~~~~~~m 198 (638)
+..|+.+-+..+++..
T Consensus 92 ~~~g~~~~v~~Ll~~~ 107 (364)
T 3ljn_A 92 VMANKTDLVVALVEGA 107 (364)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhc
Confidence 3445555444444443
No 343
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=21.22 E-value=3.3e+02 Score=22.00 Aligned_cols=61 Identities=15% Similarity=0.223 Sum_probs=26.9
Q ss_pred HHHHHHcccCCHHHHHHHHHhchhccCCCcchhHHHHHHHHHHHHHccCC--hHHHHHHHHHHHhCCC
Q 006615 446 LIIDFYGISKKADAALKAFHDDRTLCGPISKFKLMLLYSSLLRTLTKCKR--DFDAINVLEEMIFSGI 511 (638)
Q Consensus 446 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~ 511 (638)
.++.-|...|+.++|.+.++++.. +.-........+..++-+.+. .+.+..++..+...|+
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL~~-----p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKELEV-----PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTC-----GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCC-----CcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 444455555555555555555431 111111333444444444322 3345556666655443
No 344
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=20.87 E-value=2.4e+02 Score=20.68 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=14.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 006615 187 KNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223 (638)
Q Consensus 187 ~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 223 (638)
..+.|.++++.+..+|- ..|..++.++...|+.
T Consensus 52 ~~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~~ 84 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGS----QALPLFISCLEDTGQD 84 (97)
T ss_dssp HHHHHHHHHHHHTTSCT----THHHHHHHHHHTTTCH
T ss_pred hHHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCcH
Confidence 34444444444444331 2444444444433433
No 345
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=20.53 E-value=1.6e+02 Score=19.83 Aligned_cols=44 Identities=9% Similarity=0.095 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHh
Q 006615 140 FMNLMQWYSTSGDLELVLSTWNEYRQRAKLLSTESYNIVMSVYAK 184 (638)
Q Consensus 140 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~li~~~~~ 184 (638)
++.++..+++..-+++++..+++..++| ..+..+|---++.+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4455555555555566666666665555 2334455444444444
No 346
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.44 E-value=1.1e+02 Score=24.30 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=33.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 006615 174 SYNIVMSVYAKTGKNFEAVETFRQVIDEGAIPNSRTYTVMIEHLVNLGKL 223 (638)
Q Consensus 174 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 223 (638)
.-..++..+...+..-.|.++++.+.+.+...+..|.--.|+.+.+.|-+
T Consensus 15 qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 15 QRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34556666666666777888888887776666666665556666666654
No 347
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=20.36 E-value=3.8e+02 Score=22.54 Aligned_cols=18 Identities=11% Similarity=0.331 Sum_probs=8.5
Q ss_pred HHHHHHcCCHHHHHHHHH
Q 006615 214 IEHLVNLGKLDSALEVFS 231 (638)
Q Consensus 214 i~~~~~~g~~~~A~~~~~ 231 (638)
+...+..|+.+-+..+++
T Consensus 129 L~~A~~~~~~~~v~~Ll~ 146 (223)
T 2f8y_A 129 LHWAAAVNNVDAAVVLLK 146 (223)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 333445555554444443
Done!