BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006616
(638 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/314 (29%), Positives = 134/314 (42%), Gaps = 79/314 (25%)
Query: 309 IDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVW 368
I ++R+ GND C DCGAP+P W S NLG+L CIECSG+HR LGVH S+++SLTLDV
Sbjct: 8 ISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDV--L 65
Query: 369 EPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSIS 428
S + L +++GNA N + E L S KP+ +
Sbjct: 66 GTSELLLAKNIGNAGFNEIMECCLPSEDPV---------------------KPNPGSDMI 104
Query: 429 VKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYE 488
++ +I AKY E+ + RK + + H + E V+T R I + A +
Sbjct: 105 ARKDYITAKYMERRYARKKHADTA--AKLHSLCEAVKT-------RDIFGL---LQAYAD 152
Query: 489 QVSCISSLTLAKAMLLNEQXXXXXXXXXXXXXXXXXXXXXXXXXAGTSEGQTMDDLEGCT 548
V + LA G D+ T
Sbjct: 153 GVDLTEKIPLAN-------------------------------------GHEPDE----T 171
Query: 549 LLHLACDSAD---IGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
LHLA S D + +++ L+Q N++ +G T LH C L A KLLL A
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI 231
Query: 606 RAVNREGKTSLELA 619
N G+T L++A
Sbjct: 232 EIANESGETPLDIA 245
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 79/135 (58%), Gaps = 23/135 (17%)
Query: 312 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPS 371
++ V GN +C DC P P+WAS+NLGV +CI+CSG+HR+LGVH SKVRSLTLD WEP
Sbjct: 39 VQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLD--SWEPE 96
Query: 372 VITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKE 431
++ L LGN N ++E +++ + + KP S S KE
Sbjct: 97 LVKLMCELGNVIINQIYEARVEA---------------------MAVKKPGPSCSRQEKE 135
Query: 432 KFIHAKYAEKLFVRK 446
+IHAKY EK F+ K
Sbjct: 136 AWIHAKYVEKKFLTK 150
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 37/64 (57%)
Query: 563 ELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVES 622
E LLQ GAN+N DS G PLH + G A L L RGAD A + EG+ L +A+E+
Sbjct: 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET 311
Query: 623 NFAD 626
AD
Sbjct: 312 ANAD 315
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 79/135 (58%), Gaps = 23/135 (17%)
Query: 312 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPS 371
++ V GN +C DC P P+WAS+NLGV +CI+CSG+HR+LGVH SKVRSLTLD WEP
Sbjct: 39 VQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLD--SWEPE 96
Query: 372 VITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKE 431
++ L LGN N ++E +++ + + KP S S KE
Sbjct: 97 LVKLMCELGNVIINQIYEARVEA---------------------MAVKKPGPSCSRQEKE 135
Query: 432 KFIHAKYAEKLFVRK 446
+IHAKY EK F+ K
Sbjct: 136 AWIHAKYVEKKFLTK 150
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 37/64 (57%)
Query: 563 ELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVES 622
E LLQ GAN+N DS G PLH + G A L L RGAD A + EG+ L +A+E+
Sbjct: 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET 311
Query: 623 NFAD 626
AD
Sbjct: 312 ANAD 315
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 79/135 (58%), Gaps = 23/135 (17%)
Query: 312 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPS 371
++ V GN +C DC P P+WAS+NLGV +CI+CSG+HR+LGVH SKVRSLTLD WEP
Sbjct: 39 VQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLD--SWEPE 96
Query: 372 VITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKE 431
++ L LGN N ++E +++ + + KP S S KE
Sbjct: 97 LVKLMCELGNVIINQIYEARVEA---------------------MAVKKPGPSCSRQEKE 135
Query: 432 KFIHAKYAEKLFVRK 446
+IHAKY EK F+ K
Sbjct: 136 AWIHAKYVEKKFLTK 150
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 37/64 (57%)
Query: 563 ELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVES 622
E LLQ GAN+N DS G PLH + G A L L RGAD A + EG+ L +A+E+
Sbjct: 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET 311
Query: 623 NFAD 626
AD
Sbjct: 312 ANAD 315
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 79/144 (54%), Gaps = 26/144 (18%)
Query: 309 IDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVW 368
+++L+R GN RCADCGAP+PDWAS LGV +C+ CSG+HRN+ +SKV+S+ LD W
Sbjct: 26 LELLQRP-GNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLD--AW 81
Query: 369 EPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSIS 428
E + + S GN A + +E + PS + +P+ SD
Sbjct: 82 EEAQVEFMASHGNDAARARFESKV------------PSFYY----------RPTPSDCQL 119
Query: 429 VKEKFIHAKYAEKLFVRKPKDNQY 452
++E++I AKY + F+ K Y
Sbjct: 120 LREQWIRAKYERQEFIYPEKQEPY 143
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 79/144 (54%), Gaps = 26/144 (18%)
Query: 309 IDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVW 368
+++L+R GN RCADCGAP+PDWAS LGV +C+ CSG+HRN+ +SKV+S+ LD W
Sbjct: 28 LELLQRP-GNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLD--AW 83
Query: 369 EPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSIS 428
E + + S GN A + +E + PS + +P+ SD
Sbjct: 84 EEAQVEFMASHGNDAARARFESKV------------PSFYY----------RPTPSDCQL 121
Query: 429 VKEKFIHAKYAEKLFVRKPKDNQY 452
++E++I AKY + F+ K Y
Sbjct: 122 LREQWIRAKYERQEFIYPEKQEPY 145
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 29/162 (17%)
Query: 317 GNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLF 376
GN +C DCGA +P W S NLGVL CI+CSGVHR LGV S+++SLTLD + PS + L
Sbjct: 41 GNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLD--LLGPSELLLA 98
Query: 377 QSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHA 436
++GN N V E L S KPS + + +I A
Sbjct: 99 LNMGNTSFNEVMEAQLPSHGG---------------------PKPSAESDMGTRRDYIMA 137
Query: 437 KYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVN 478
KY E F R+ ++W + D +V N
Sbjct: 138 KYVEHRFARRCTPE------PQRLWTAICNRDLLSVLEAFAN 173
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 549 LLHLA---CDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
+LHLA + A + +++ ++Q G +++A + G T LH L + KLLL A
Sbjct: 193 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV 252
Query: 606 RAVNREGKTSLELAVESNFADSEVL 630
VN G+T+L++A + + + E L
Sbjct: 253 GTVNEAGETALDIARKKHHKECEEL 277
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 66/130 (50%), Gaps = 23/130 (17%)
Query: 317 GNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLF 376
GN +C DCGA +P W S NLGVL CI+CSGVHR LGV S+++SLTLD + PS + L
Sbjct: 22 GNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLD--LLGPSELLLA 79
Query: 377 QSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHA 436
++GN N V E L S KPS + + +I A
Sbjct: 80 LNMGNTSFNEVMEAQLPSHGG---------------------PKPSAESDMGTRRDYIMA 118
Query: 437 KYAEKLFVRK 446
KY E F R+
Sbjct: 119 KYVEHRFARR 128
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 549 LLHLA---CDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
+LHLA + A + +++ ++Q G +++A + G T LH L + KLLL A
Sbjct: 174 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV 233
Query: 606 RAVNREGKTSLELAVESNFADSEVL 630
VN G+T+L++A + + + E L
Sbjct: 234 GTVNEAGETALDIARKKHHKECEEL 258
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
pdb|2IQJ|B Chain B, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
Length = 134
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 318 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQ 377
N CADC + P WAS N+GV +CI C+G+HRNLGVHIS+V+S+ LD W I Q
Sbjct: 27 NKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD--QWTQEQIQCMQ 84
Query: 378 SLGNAFANSVWEELL 392
+GN AN ++E L
Sbjct: 85 EMGNGKANRLYEAYL 99
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1
Length = 141
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 318 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQ 377
N CADC A P WAS N+GV +CI C+G+HRNLGVHIS+V+S+ LD W I Q
Sbjct: 29 NKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD--QWTAEQIQCMQ 86
Query: 378 SLGNAFANSVWEELL 392
+GN A ++E L
Sbjct: 87 DMGNTKARLLYEANL 101
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein
Length = 144
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 312 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPS 371
LR V N C DCGA P WAS+ GV +CI+CSGVHR+LGVH+S +RS LD W
Sbjct: 31 LRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSN-WNWF 89
Query: 372 VITLFQSLGNAFANSVWEE 390
+ Q GNA A + + +
Sbjct: 90 QLRCMQVGGNANATAFFRQ 108
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of
Adp-Ribosylation Factor Gtpaseactivating Protein 3
(Arfgap 3)
Length = 149
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 312 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPS 371
LR V N C DCGA P WAS+ GV +CI+CSG HR+LGVH+S +RS LD W
Sbjct: 23 LRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSN-WSWF 81
Query: 372 VITLFQSLGNAFANSVWEE 390
+ Q GNA A+S + +
Sbjct: 82 QLRCMQVGGNASASSFFHQ 100
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
pdb|3SUB|B Chain B, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
Length = 163
Score = 75.5 bits (184), Expect = 7e-14, Method: Composition-based stats.
Identities = 29/48 (60%), Positives = 38/48 (79%)
Query: 318 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDV 365
N++C DCG PDW S+N G+ +CI CSGVHR+LGVHIS VRS+ +D+
Sbjct: 22 NNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDI 69
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 62/93 (66%), Gaps = 1/93 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D +G T LHLA D+ + ++E+LL+YGA++NA D+ GLTPLH RG ++LL G
Sbjct: 77 DTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHG 136
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
AD A ++ GKT+ ++++++ D +E+L L+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/79 (40%), Positives = 45/79 (56%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D +G T LHLA ++E+LL++GA++NA D+ G TPLH G ++LL G
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYG 103
Query: 603 ADPRAVNREGKTSLELAVE 621
AD A + G T L LA +
Sbjct: 104 ADVNAQDAYGLTPLHLAAD 122
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE 621
+ +L+ GA++NA D +G TPLH G ++LL GAD A + +G T L LA +
Sbjct: 30 VRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAAD 89
Query: 622 S 622
+
Sbjct: 90 N 90
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D +G T LHLA ++ +++LLL GA+ NA DS G TPLH G KLLL++G
Sbjct: 34 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG 93
Query: 603 ADPRAVNREGKTSLELAVESNFADSEVLAIL 633
ADP A + +GKT L LA E+ EV+ +L
Sbjct: 94 ADPNAKDSDGKTPLHLAAENGH--KEVVKLL 122
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D +G T LHLA ++ +++LLL GA+ NA DS G TPLH G KLLL++G
Sbjct: 67 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG 126
Query: 603 ADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
ADP + +G+T L+LA E + EV+ +L G
Sbjct: 127 ADPNTSDSDGRTPLDLARE--HGNEEVVKLLEKQGG 160
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 565 LLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNF 624
LL+ GA++NA+DS G TPLH G KLLL++GADP A + +GKT L LA E+
Sbjct: 23 LLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGH 82
Query: 625 ADSEVLAIL 633
EV+ +L
Sbjct: 83 --KEVVKLL 89
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D +G T LHLA + ++E+LL+YGA++NA D+ G+TPLH +RG ++LL G
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHG 103
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
AD A ++ GKT+ ++++++ D +E+L L+
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 32/58 (55%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELA 619
+ +L+ GA++NA D GLTPLH G ++LL GAD A + G T L LA
Sbjct: 30 VRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLA 87
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLL 598
+D G T LHLA + ++E+LL++GA++NA D G T I G A++L
Sbjct: 76 EDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 318 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQ 377
N+ C +CGA P W S+ G+ +C+ECSG HR LGVH+S VRS+T+D W+ + +
Sbjct: 37 NNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMD--KWKDIELEKMK 94
Query: 378 SLGNA 382
+ GNA
Sbjct: 95 AGGNA 99
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
pdb|3DWD|B Chain B, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
Length = 147
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 318 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQ 377
N+ C +CGA P W S+ G+ +C+ECSG HR LGVH+S VRS+T+D W+ + +
Sbjct: 38 NNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMD--KWKDIELEKMK 95
Query: 378 SLGNA 382
+ GNA
Sbjct: 96 AGGNA 100
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G T LHLA + ++E+LL+ GA++NA+DS G TPLH RG ++LL G
Sbjct: 77 DSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNG 136
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
AD A ++ GKT+ ++++++ D +E+L L+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 46/79 (58%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G T LHLA + ++E+LL+ GA++NA DS G+TPLH RG ++LL G
Sbjct: 44 DFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNG 103
Query: 603 ADPRAVNREGKTSLELAVE 621
AD A + G T L LA +
Sbjct: 104 ADVNASDSHGFTPLHLAAK 122
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE 621
+ +L+ GA++NA D G TPLH G ++LL GAD A + G T L LA
Sbjct: 30 VRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAAR 89
Query: 622 SNFADSEVLAIL---------SDSHG 638
E++ +L SDSHG
Sbjct: 90 RGHL--EIVEVLLKNGADVNASDSHG 113
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G T LHLA D+ + ++E+LL++GA++NA D G TPLH G ++LL G
Sbjct: 77 DNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYG 136
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
AD A ++ GKT+ ++++++ D +E+L L+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/77 (44%), Positives = 46/77 (59%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G T LHLA + + ++E+LL+YGA++NA D+ G TPLH G ++LL G
Sbjct: 44 DWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHG 103
Query: 603 ADPRAVNREGKTSLELA 619
AD A + EG T L LA
Sbjct: 104 ADVNAKDYEGFTPLHLA 120
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE 621
+ +L+ GA++NATD G TPLH G ++LL GAD A + G T L LA +
Sbjct: 30 VRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAAD 89
Query: 622 S 622
+
Sbjct: 90 N 90
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
+D G T LHL ++ + ++E+LL+Y A++NA+D G TPLH RG ++LL
Sbjct: 43 NDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKY 102
Query: 602 GADPRAVNREGKTSLELAVE 621
GAD A++ +G T L LA E
Sbjct: 103 GADVNAMDYQGYTPLHLAAE 122
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G T LHLA + ++E+LL+YGA++NA D +G TPLH G ++LL G
Sbjct: 77 DKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYG 136
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
AD A ++ GKT+ ++++++ D +E+L L+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELA 619
+ +L+ GA++NA D G+TPLH + G ++LL AD A ++ G T L LA
Sbjct: 30 VRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLA 87
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 36/94 (38%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
+D +G T LHLA D + ++E+LL++GA++NA D+ G TPLH L G ++LL
Sbjct: 43 NDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKH 102
Query: 602 GADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
GAD A ++ GKT+ ++++++ D +E+L L+
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE 621
+ +L+ GA++NA D +G TPLH ++LL GAD A + +G T L LA
Sbjct: 30 VRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLA-- 87
Query: 622 SNFADSEVLAIL 633
+ F E++ +L
Sbjct: 88 ALFGHLEIVEVL 99
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 65.9 bits (159), Expect = 6e-11, Method: Composition-based stats.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
DD G T LHLA D + ++E+LL+ GA++NA D G TPLH G ++LL
Sbjct: 76 DDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKH 135
Query: 602 GADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
GAD A ++ GKT+ ++++++ D +E+L L+
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G T LHLA + ++E+LL+ GA++NA DS G+TPLH RG ++LL G
Sbjct: 44 DHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNG 103
Query: 603 ADPRAVNREGKTSLELAVESNFADSEVLAIL 633
AD A + G T L LA +N E++ +L
Sbjct: 104 ADVNANDHNGFTPLHLA--ANIGHLEIVEVL 132
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 33/60 (55%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE 621
+ +L+ GA++NA+D G TPLH G ++LL GAD A + G T L LA +
Sbjct: 30 VRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAAD 89
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 65.5 bits (158), Expect = 8e-11, Method: Composition-based stats.
Identities = 38/103 (36%), Positives = 63/103 (61%), Gaps = 2/103 (1%)
Query: 533 AGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKA 592
A ++ MDD G T LHLA + ++E+LL++GA++NA+DS G TPLH G
Sbjct: 35 ANGADVNAMDD-AGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHL 93
Query: 593 MFAKLLLTRGADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
++LL GAD A ++ GKT+ ++++++ D +E+L L+
Sbjct: 94 EIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELA 619
+ +L+ GA++NA D G+TPLH RG ++LL GAD A + G+T L LA
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLA 87
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/96 (39%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D +G T LH A ++ +++LLL GA+ NA DS G TPLH G KLLL++G
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKG 126
Query: 603 ADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
ADP + +G+T L+LA E + E++ +L G
Sbjct: 127 ADPNTSDSDGRTPLDLAREH--GNEEIVKLLEKQGG 160
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 35/80 (43%), Positives = 48/80 (60%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D +G T LH A ++ +++LLL GA+ NA DS G TPLH G KLLL++G
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKG 93
Query: 603 ADPRAVNREGKTSLELAVES 622
ADP A + +G+T L A E+
Sbjct: 94 ADPNAKDSDGRTPLHYAAEN 113
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 37/58 (63%)
Query: 565 LLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVES 622
LL+ GA+ NA+DS G TPLH G KLLL++GADP A + +G+T L A E+
Sbjct: 23 LLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAEN 80
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G T LHLA + ++E+LL+YGA++NA D+ G TPLH G ++LL G
Sbjct: 77 DFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYG 136
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVL 630
AD A ++ GKT+ ++++++ D +E+L
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/81 (40%), Positives = 46/81 (56%)
Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
+D G T LHLA + ++E+LL+ GA++NA D G TPLH RG ++LL
Sbjct: 43 EDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKY 102
Query: 602 GADPRAVNREGKTSLELAVES 622
GAD A + G T L LA ++
Sbjct: 103 GADVNADDTIGSTPLHLAADT 123
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 34/57 (59%)
Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLL 598
DD G T LHLA D+ + ++E+LL+YGA++NA D G T I G A++L
Sbjct: 109 DDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE 621
+ +L+ GA++NA D+ G TPLH G ++LL GAD A++ G T L LA +
Sbjct: 30 VRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAK 89
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
DL G T LHLA + + ++E+LL++GA++NA D+ G TPLH G ++LL G
Sbjct: 77 DLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHG 136
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVL 630
AD A ++ GKT+ ++++++ D +E+L
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D +G T LHLA + + ++E+LL+ GA++NA+D G+TPLH G ++LL G
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHG 103
Query: 603 ADPRAVNREGKTSLELAVESNFADSEVLAIL 633
AD A + +G T L LA + + E++ +L
Sbjct: 104 ADVNAYDNDGHTPLHLA--AKYGHLEIVEVL 132
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE 621
+ +L+ GA++NATD+ G TPLH G ++LL GAD A + G T L LA
Sbjct: 30 VRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAA 89
Query: 622 S 622
+
Sbjct: 90 T 90
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D+ G T LHLA + ++E+LL++GA++NA D+ G TPLH + G ++LL G
Sbjct: 77 DIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG 136
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
AD A ++ GKT+ ++++++ D +E+L L+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/77 (44%), Positives = 45/77 (58%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G T LHLA + ++E+LL++GA++NA D G TPLH L G ++LL G
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHG 103
Query: 603 ADPRAVNREGKTSLELA 619
AD AV+ G T L LA
Sbjct: 104 ADVNAVDTWGDTPLHLA 120
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELA 619
+ +L+ GA++NATD+ GLTPLH G ++LL GAD A++ G T L LA
Sbjct: 30 VRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLA 87
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/80 (43%), Positives = 48/80 (60%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G T LHLA + + ++E+LL+ GA++NA+DS G+TPLH G ++LL G
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHG 95
Query: 603 ADPRAVNREGKTSLELAVES 622
AD A +R G T L LA S
Sbjct: 96 ADVNAYDRAGWTPLHLAALS 115
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G T LHLA + ++E+LL++GA++NA D G TPLH L G+ ++LL G
Sbjct: 69 DSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHG 128
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVL 630
AD A + G T+ ++++ D +E+L
Sbjct: 129 ADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 34/58 (58%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELA 619
+ +L+ GA++NATD GLTPLH G+ ++LL GAD A + G T L LA
Sbjct: 22 VRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLA 79
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D+ G T LHLA + ++E+LL++GA++NA D+ G TPLH + G ++LL G
Sbjct: 77 DIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG 136
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
AD A ++ GKT+ ++++++ D +E+L L+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/77 (44%), Positives = 45/77 (58%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G T LHLA + ++E+LL++GA++NA D G TPLH L G ++LL G
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHG 103
Query: 603 ADPRAVNREGKTSLELA 619
AD AV+ G T L LA
Sbjct: 104 ADVNAVDTWGDTPLHLA 120
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELA 619
+ +L+ GA++NATD+ GLTPLH G ++LL GAD A++ G T L LA
Sbjct: 30 VRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLA 87
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G T LHLA + ++E+LL+YGA++NA D+ G+TPL+ G ++LL G
Sbjct: 65 DTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHG 124
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVL 630
AD A ++ GKT+ +++++ D +E+L
Sbjct: 125 ADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 43/77 (55%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G T LH+A + ++E+LL+ GA++NA D+ G TPLH G ++LL G
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYG 91
Query: 603 ADPRAVNREGKTSLELA 619
AD A + G T L LA
Sbjct: 92 ADVNAKDATGITPLYLA 108
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE 621
+ +L+ GA+ NA D G TPLH G ++LL GAD AV+ G T L LA
Sbjct: 18 VRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLA-- 75
Query: 622 SNFADSEVLAIL 633
++ E++ +L
Sbjct: 76 ASLGHLEIVEVL 87
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G T LHLA + ++E+LL+ GA++NA D G+TPLH RG ++LL G
Sbjct: 77 DTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYG 136
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
AD A ++ GKT+ ++++ + D +E+L L+
Sbjct: 137 ADVNAQDKFGKTAFDISINNGNEDLAEILQKLN 169
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D+ G T LHLA + ++E+LL+ GA++NA D+ G TPLH G ++LL G
Sbjct: 44 DVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNG 103
Query: 603 ADPRAVNREGKTSLELAVESNFADSEVLAIL 633
AD A + G T L LA +N E++ +L
Sbjct: 104 ADVNAKDDNGITPLHLA--ANRGHLEIVEVL 132
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE 621
+ +L+ GA++NA D G TPLH G ++LL GAD A + G T L LA
Sbjct: 30 VRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLA-- 87
Query: 622 SNFADSEVLAIL 633
++F E++ +L
Sbjct: 88 AHFGHLEIVEVL 99
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D +G T LHLA + ++E+LL+ GA++NA D G TPLH G ++LL G
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 124
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVL 630
AD A ++ GKT +LA+++ D +EVL
Sbjct: 125 ADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D +G T LHLA + ++E+LL+ GA++NA D G TPLH G ++LL G
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 603 ADPRAVNREGKTSLELAV-ESNFADSEVL 630
AD A +++G T L LA E + EVL
Sbjct: 92 ADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAV- 620
+ +L+ GA++NA D G TPLH G ++LL GAD A +++G T L LA
Sbjct: 18 VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 77
Query: 621 ESNFADSEVL 630
E + EVL
Sbjct: 78 EGHLEIVEVL 87
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 37/103 (35%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 533 AGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKA 592
A ++ MDD G T LHLA + ++E+LL++GA++NA+D G TPLH G
Sbjct: 35 ANGADVNAMDD-AGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHL 93
Query: 593 MFAKLLLTRGADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
++LL GAD A ++ GKT+ ++++++ D +E+L L+
Sbjct: 94 EIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELA 619
+ +L+ GA++NA D G+TPLH RG ++LL GAD A + G+T L LA
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLA 87
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 62.8 bits (151), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 52/84 (61%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D+ G T LHLA + + ++E+LL+YGA++NA D G TPLH G ++LL G
Sbjct: 77 DVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYG 136
Query: 603 ADPRAVNREGKTSLELAVESNFAD 626
AD A ++ GKT+ ++++++ D
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNED 160
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/79 (40%), Positives = 46/79 (58%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G T LHLA S + ++E+LL++GA+++A D G TPLH + G ++LL G
Sbjct: 44 DNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYG 103
Query: 603 ADPRAVNREGKTSLELAVE 621
AD A + G T L LA +
Sbjct: 104 ADVNAFDMTGSTPLHLAAD 122
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELA 619
+ +L+ GA++NA D+ GLTPLH + G ++LL GAD A + G T L LA
Sbjct: 30 VRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLA 87
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 31/54 (57%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAK 596
D+ G T LHLA D + ++E+LL+YGA++NA D G T I G AK
Sbjct: 110 DMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAK 163
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D +G T LHLA + ++E+LL+ GA++NA D G TPLH G ++LL G
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 124
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVL 630
AD A ++ GKT +LA+ D +EVL
Sbjct: 125 ADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D +G T LHLA + ++E+LL+ GA++NA D G TPLH G ++LL G
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 603 ADPRAVNREGKTSLELAV-ESNFADSEVL 630
AD A +++G T L LA E + EVL
Sbjct: 92 ADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAV- 620
+ +L+ GA++NA D G TPLH G ++LL GAD A +++G T L LA
Sbjct: 18 VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 77
Query: 621 ESNFADSEVL 630
E + EVL
Sbjct: 78 EGHLEIVEVL 87
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 62.0 bits (149), Expect = 9e-10, Method: Composition-based stats.
Identities = 37/103 (35%), Positives = 61/103 (59%), Gaps = 2/103 (1%)
Query: 533 AGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKA 592
A ++ MDD G T LHLA + ++E+LL++GA++NA D G TPLH G
Sbjct: 35 ANGADVNAMDD-AGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHL 93
Query: 593 MFAKLLLTRGADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
++LL GAD A ++ GKT+ ++++++ D +E+L L+
Sbjct: 94 EIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELA 619
+ +L+ GA++NA D G+TPLH RG ++LL GAD A + G+T L LA
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLA 87
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
+D G T LHLA + + ++E+LL+ GA++NA D G+TPL L G ++LL
Sbjct: 43 EDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN 102
Query: 602 GADPRAVNREGKTSLELAVESNFADSEVLAIL 633
GAD A + EG T L LA + F E++ +L
Sbjct: 103 GADVNANDMEGHTPLHLA--AMFGHLEIVEVL 132
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G T L LA + ++E+LL+ GA++NA D G TPLH + G ++LL G
Sbjct: 77 DHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
AD A ++ GKT+ ++++++ D +E+L L+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE 621
+ +L+ GA++NA D+ G TPLH G ++LL GAD AV+ G T L LA
Sbjct: 30 VRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLA-- 87
Query: 622 SNFADSEVLAIL 633
+ F E++ +L
Sbjct: 88 ALFGHLEIVEVL 99
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLL 598
+D+EG T LHLA + ++E+LL+ GA++NA D G T I G A++L
Sbjct: 109 NDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D+ G T LHLA + ++E+LL+ GA++NA DS G+TPLH G ++LL G
Sbjct: 77 DVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHG 136
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
AD A ++ GKT+ ++++++ D +E+L L+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G T LHLA S + ++E+LL++GA+++A+D G TPLH G ++LL G
Sbjct: 44 DNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNG 103
Query: 603 ADPRAVNREGKTSLELAVE 621
AD A++ +G T L LA +
Sbjct: 104 ADVNAMDSDGMTPLHLAAK 122
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELA 619
+ +L+ GA++NA D+ G TPLH G ++LL GAD A + G T L LA
Sbjct: 30 VRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLA 87
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/81 (40%), Positives = 43/81 (53%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G LH AC + ELL+++GA +N D TPLH +GK KLLL G
Sbjct: 74 DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 133
Query: 603 ADPRAVNREGKTSLELAVESN 623
ADP NR+G T L+L + +
Sbjct: 134 ADPTKKNRDGNTPLDLVKDGD 154
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/81 (40%), Positives = 43/81 (53%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G LH AC + ELL+++GA +N D TPLH +GK KLLL G
Sbjct: 76 DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 135
Query: 603 ADPRAVNREGKTSLELAVESN 623
ADP NR+G T L+L + +
Sbjct: 136 ADPTKKNRDGNTPLDLVKDGD 156
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/81 (40%), Positives = 43/81 (53%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G LH AC + ELL+++GA +N D TPLH +GK KLLL G
Sbjct: 72 DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 131
Query: 603 ADPRAVNREGKTSLELAVESN 623
ADP NR+G T L+L + +
Sbjct: 132 ADPTKKNRDGNTPLDLVKDGD 152
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/80 (42%), Positives = 46/80 (57%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G T LHLA + + +++LLL+ GA++NA D G TPLH G KLLL G
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Query: 603 ADPRAVNREGKTSLELAVES 622
AD A ++ G+T L LA +
Sbjct: 92 ADVNAKDKNGRTPLHLAARN 111
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 45/77 (58%)
Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
G T LHLA + + +++LLL+ GA++NA D G TPLH G KLLL GAD
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 606 RAVNREGKTSLELAVES 622
A ++ G+T L LA +
Sbjct: 62 NAKDKNGRTPLHLAARN 78
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 35/61 (57%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G T LHLA + + +++LLL+ GA++NA D G TPLH G KLLL G
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
Query: 603 A 603
A
Sbjct: 125 A 125
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D +G T LHLA + ++E+LL+ GA++NA D G TPLH G ++LL G
Sbjct: 77 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 136
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVL 630
AD A ++ GKT+ ++++++ D +E+L
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D +G T LHLA + ++E+LL+ GA++NA D G TPLH G ++LL G
Sbjct: 44 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 103
Query: 603 ADPRAVNREGKTSLELAV-ESNFADSEVL 630
AD A +++G T L LA E + EVL
Sbjct: 104 ADVNAKDKDGYTPLHLAAREGHLEIVEVL 132
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAV- 620
+ +L+ GA++NA D G TPLH G ++LL GAD A +++G T L LA
Sbjct: 30 VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 89
Query: 621 ESNFADSEVL 630
E + EVL
Sbjct: 90 EGHLEIVEVL 99
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
+D G T LHLA + + ++E+LL+ GA++NA D+ G TPLH + G ++LL
Sbjct: 43 EDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKH 102
Query: 602 GADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
GAD A ++ GKT+ ++++++ D +E+L L+
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLEL 618
+ +L+ GA++NA D GLTPLH + ++LL GAD A++ G+T L L
Sbjct: 30 VRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHL 86
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D +G T LH A ++ +++LL+ GA++NA DS G TPLH G KLL+++G
Sbjct: 67 DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG 126
Query: 603 ADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
AD + +G+T L+LA E + EV+ +L G
Sbjct: 127 ADVNTSDSDGRTPLDLAREH--GNEEVVKLLEKQGG 160
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D +G T LH A ++ +++LL+ GA++NA DS G TPLH G KLL+++G
Sbjct: 34 DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG 93
Query: 603 ADPRAVNREGKTSLELAVESNFADSEVLAIL 633
AD A + +G+T L A E+ EV+ +L
Sbjct: 94 ADVNAKDSDGRTPLHHAAEN--GHKEVVKLL 122
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 565 LLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNF 624
L++ GA++NA+DS G TPLH G KLL+++GAD A + +G+T L A E+
Sbjct: 23 LIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN-- 80
Query: 625 ADSEVLAIL 633
EV+ +L
Sbjct: 81 GHKEVVKLL 89
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G T LHLA + ++E+LL+ GA++NATD+ G TPLH G ++LL G
Sbjct: 77 DKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYG 136
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
AD A ++ GKT+ ++++++ D +E+L L+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/81 (40%), Positives = 47/81 (58%)
Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
+D G T LHLA + ++E+LL++GA++NA D G TPLH L G ++LL
Sbjct: 43 EDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKN 102
Query: 602 GADPRAVNREGKTSLELAVES 622
GAD A + G T L LA ++
Sbjct: 103 GADVNATDTYGFTPLHLAADA 123
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELA 619
+ +L+ GA++NA D G TPLH ++G ++LL GAD A ++ G T L LA
Sbjct: 30 VRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLA 87
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D +G T LH A +++LL+ GA++NA DS G TPLH G KLL+++G
Sbjct: 67 DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKG 126
Query: 603 ADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
AD + +G+T L+LA E + E++ +L G
Sbjct: 127 ADVNTSDSDGRTPLDLAREH--GNEEIVKLLEKQGG 160
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 45/79 (56%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D +G T LH A +++LL+ GA++NA DS G TPLH G KLL+++G
Sbjct: 34 DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKG 93
Query: 603 ADPRAVNREGKTSLELAVE 621
AD A + +G+T L A +
Sbjct: 94 ADVNAKDSDGRTPLHYAAK 112
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 565 LLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE 621
L++ GA++NA+DS G TPLH G KLL+++GAD A + +G+T L A +
Sbjct: 23 LIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAK 79
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
+++G T LH AC ++ M++ L++ GANIN D+ G PLH G A+ L+++G
Sbjct: 70 NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG 129
Query: 603 ADPRAVNREGKTSLEL 618
A AVN EG T L++
Sbjct: 130 AHVGAVNSEGDTPLDI 145
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
G T LH+A +L+LL+Q ++N D G TPLH GK ++L+ D
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM 258
Query: 606 RAVNREGKTSLELAVES 622
AVN+ G+T+ ++A E
Sbjct: 259 EAVNKVGQTAFDVADED 275
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%)
Query: 553 ACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREG 612
AC S D + LL+ GA+IN + GLT LH+ + K L+ GA+ + EG
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106
Query: 613 KTSLELAVESNFAD 626
L A + D
Sbjct: 107 WIPLHAAASCGYLD 120
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 45/77 (58%)
Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
G T LHLA + + +++LLL+ GA++NA D G TPLH G KLLL GAD
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 606 RAVNREGKTSLELAVES 622
A ++ G+T L LA +
Sbjct: 62 NAKDKNGRTPLHLAARN 78
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 35/61 (57%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G T LHLA + + +++LLL+ GA++NA D G TPLH G KLLL G
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Query: 603 A 603
A
Sbjct: 92 A 92
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G T L+LA + ++E+LL+ GA++NA D+ G TPLH G A++LL G
Sbjct: 44 DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG 103
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
AD A ++ GKT+ ++++ + D +E+L L+
Sbjct: 104 ADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELA 619
+ +L+ GA++NA D GLTPL+ G ++LL GAD AV+ G T L LA
Sbjct: 30 VRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLA 87
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
pdb|2OWA|B Chain B, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
Length = 138
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 311 VLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEP 370
++R N C DC + P W SL+ V +C+ CS HR +GVHIS VRS LD + P
Sbjct: 29 IVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLD--KFTP 86
Query: 371 SVITLFQSLGNAFANSVWEELL 392
+ GN A + ++++L
Sbjct: 87 IQLVRMDIGGNGRARNYFKQVL 108
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
G T LH+A +I +++ LLQ+ A++NA G +PLH+ +G LLL GA P
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP 370
Query: 606 RAVNREGKTSLELAVESNFAD-SEVLAILSD 635
V+ +G T L +A + ++VL +++D
Sbjct: 371 NEVSSDGTTPLAIAKRLGYISVTDVLKVVTD 401
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 40/79 (50%)
Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 604
+G T LH+A + + ELLL+ A+ NA GLTPLH + KLLL RG
Sbjct: 145 KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS 204
Query: 605 PRAVNREGKTSLELAVESN 623
P + G T L +A + N
Sbjct: 205 PHSPAWNGYTPLHIAAKQN 223
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
G T LH+A + + LLQYG + NA +G+TPLH G A LLL++ A+
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271
Query: 606 RAVNREGKTSLEL-AVESNFADSEVL 630
N+ G T L L A E + ++VL
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVL 297
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 39/81 (48%)
Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
G T LH+A + + LL+ A+ +G TPLH GK A+LLL R A P
Sbjct: 113 GHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP 172
Query: 606 RAVNREGKTSLELAVESNFAD 626
A + G T L +AV N D
Sbjct: 173 NAAGKNGLTPLHVAVHHNNLD 193
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 37/78 (47%)
Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
+ ++G T LHLA M+ LLL AN N + GLTPLH G A +L+
Sbjct: 241 ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH 300
Query: 602 GADPRAVNREGKTSLELA 619
G A R G T L +A
Sbjct: 301 GVMVDATTRMGYTPLHVA 318
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%)
Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
G T LHL + + ++L+++G ++AT G TPLH G K LL AD
Sbjct: 278 GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV 337
Query: 606 RAVNREGKTSLELAVESNFAD 626
A + G + L A + D
Sbjct: 338 NAKTKLGYSPLHQAAQQGHTD 358
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 548 TLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA 607
T LH+A + + + LLQ A +NA TPLH G KLLL A+P
Sbjct: 49 TPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL 108
Query: 608 VNREGKTSLELAVESNFADSEVLAIL 633
G T L +A ++ VLA+L
Sbjct: 109 ATTAGHTPLHIAAREGHVET-VLALL 133
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%)
Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
G T LH+A ++ +++LLL G + ++ G TPLH + + A+ LL G
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 238
Query: 606 RAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
A + +G T L LA + A+ L + ++G
Sbjct: 239 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%)
Query: 547 CTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPR 606
T LH+A + +++ LLQ GA+ N ++ + TPLH G AK LL A
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 607 AVNREGKTSLELA 619
A ++ +T L A
Sbjct: 75 AKAKDDQTPLHCA 87
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 580 LTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFAD 626
LTPLH G K LL RGA P N + +T L +A + +
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE 61
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G LH AC + ELLL++GA +NA D TPLH + + LLL+ G
Sbjct: 88 DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHG 147
Query: 603 ADPRAVNREGKTSLELA 619
ADP VN GK+++++A
Sbjct: 148 ADPTLVNCHGKSAVDMA 164
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 6/89 (6%)
Query: 548 TLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA 607
T LH+A + A ++E+L ++GA +NA DS G T LHR L G +LLL+ G+DP
Sbjct: 249 TPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSI 308
Query: 608 VNREGKTSLELAVESNFADSEVLAILSDS 636
++ +G T+ ++ E+ V ILS+S
Sbjct: 309 ISLQGFTAAQMGNEA------VQQILSES 331
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 561 MLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSL 616
++ LL N +A+D R TPLH + +LLL GAD A ++ G L
Sbjct: 40 LMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPL 95
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
DL G T L AC ++ LLLQ+GA+INA++++G T LH ++ +LLL G
Sbjct: 149 DLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHG 208
Query: 603 ADPRAVNREGKTSLELAVESNFADSEVLAIL 633
A + +N+ +T+++ A E N E+L ++
Sbjct: 209 ASVQVLNKRQRTAVDCA-EQNSKIMELLQVV 238
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%)
Query: 538 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKL 597
G + +G + LH+A ++ LLL++GAN A ++ PLH +G K
Sbjct: 78 GVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKC 137
Query: 598 LLTRGADPRAVNREGKTSL 616
LL A P + G T L
Sbjct: 138 LLDSNAKPNKKDLSGNTPL 156
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 569 GANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSE 628
G +N T G +PLH L G+A LLL GA+ A N + L LA + +
Sbjct: 76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGH--FQ 133
Query: 629 VLAILSDSHG 638
V+ L DS+
Sbjct: 134 VVKCLLDSNA 143
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
+D G T LHLA + ++E+LL+ GA++NAT + G TPLH ++LL
Sbjct: 43 NDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKH 102
Query: 602 GADPRAVNREGKTSLELAVESNFAD-SEVLAIL 633
GAD A ++ GKT+ ++++++ D +E+L L
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 31/58 (53%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELA 619
+ +L GA++NA D G TPLH + G ++LL GAD A G+T L LA
Sbjct: 30 VRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLA 87
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 41/84 (48%)
Query: 540 TMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLL 599
T D + T LH AC + ++E LLQ G +N D G +PLH G+ K LL
Sbjct: 34 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 600 TRGADPRAVNREGKTSLELAVESN 623
+GA AVN+ G T L A N
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKN 117
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 548 TLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA 607
T +H A ++ M+ +LL Y A+ N D+ G TPLH + AK L+T+GA
Sbjct: 141 TAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYI 200
Query: 608 VNREGKTSLELA 619
N+E KT L++A
Sbjct: 201 ENKEEKTPLQVA 212
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G + LH+A + +++ LL GA++NA + G TPLH + + A +LL G
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 603 ADPRAVNREGKTSLELA 619
A+P A + T++ A
Sbjct: 130 ANPDAKDHYDATAMHRA 146
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%)
Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
GCT LH A + +LL+ GAN +A D T +HR +G +LL A
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST 165
Query: 606 RAVNREGKTSLELAVE 621
+ EG T L LA +
Sbjct: 166 NIQDTEGNTPLHLACD 181
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 540 TMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPL 583
+ D EG T LHLACD + + L+ GA+I + TPL
Sbjct: 166 NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPL 209
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 41/84 (48%)
Query: 540 TMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLL 599
T D + T LH AC + ++E LLQ G +N D G +PLH G+ K LL
Sbjct: 35 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 94
Query: 600 TRGADPRAVNREGKTSLELAVESN 623
+GA AVN+ G T L A N
Sbjct: 95 GKGAQVNAVNQNGCTPLHYAASKN 118
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 548 TLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA 607
T +H A ++ M+ +LL Y A+ N D+ G TPLH + AKLL+++GA
Sbjct: 142 TAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYI 201
Query: 608 VNREGKTSLELA 619
N+E KT L++A
Sbjct: 202 ENKEEKTPLQVA 213
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G + LH+A + +++ LL GA +NA + G TPLH + + A +LL G
Sbjct: 71 DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 130
Query: 603 ADPRAVNREGKTSLELA 619
A+P A + T++ A
Sbjct: 131 ANPDAKDHYEATAMHRA 147
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%)
Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
GCT LH A + +LL+ GAN +A D T +HR +G +LL A
Sbjct: 107 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST 166
Query: 606 RAVNREGKTSLELAVE 621
+ EG T L LA +
Sbjct: 167 NIQDTEGNTPLHLACD 182
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 540 TMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPL 583
+ D EG T LHLACD + +LL+ GA+I + TPL
Sbjct: 167 NIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPL 210
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 41/84 (48%)
Query: 540 TMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLL 599
T D + T LH AC + ++E LLQ G +N D G +PLH G+ K LL
Sbjct: 34 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 600 TRGADPRAVNREGKTSLELAVESN 623
+GA AVN+ G T L A N
Sbjct: 94 GKGAQVNAVNQNGCTPLHYAASKN 117
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 548 TLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA 607
T +H A ++ M+ +LL Y A+ N D+ G TPLH + AKLL+++GA
Sbjct: 141 TAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYI 200
Query: 608 VNREGKTSLELA 619
N+E KT L++A
Sbjct: 201 ENKEEKTPLQVA 212
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G + LH+A + +++ LL GA +NA + G TPLH + + A +LL G
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 603 ADPRAVNREGKTSLELA 619
A+P A + T++ A
Sbjct: 130 ANPDAKDHYEATAMHRA 146
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%)
Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
GCT LH A + +LL+ GAN +A D T +HR +G +LL A
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST 165
Query: 606 RAVNREGKTSLELAVE 621
+ EG T L LA +
Sbjct: 166 NIQDTEGNTPLHLACD 181
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 540 TMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPL 583
+ D EG T LHLACD + +LL+ GA+I + TPL
Sbjct: 166 NIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPL 209
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 40/84 (47%)
Query: 540 TMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLL 599
T D + T LH AC + ++E LLQ G +N D G +PLH G K LL
Sbjct: 34 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALL 93
Query: 600 TRGADPRAVNREGKTSLELAVESN 623
+GA AVN+ G T L A N
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKN 117
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 548 TLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA 607
T +H A ++ M+ +LL Y A+ N D+ G TPLH + AK L+T+GA
Sbjct: 141 TAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYI 200
Query: 608 VNREGKTSLELA 619
N+E KT L++A
Sbjct: 201 ENKEEKTPLQVA 212
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G + LH+A + +++ LL GA++NA + G TPLH + + A +LL G
Sbjct: 70 DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 603 ADPRAVNREGKTSLELA 619
A+P A + T++ A
Sbjct: 130 ANPDAKDHYDATAMHRA 146
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%)
Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
GCT LH A + +LL+ GAN +A D T +HR +G +LL A
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST 165
Query: 606 RAVNREGKTSLELAVE 621
+ EG T L LA +
Sbjct: 166 NIQDTEGNTPLHLACD 181
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 540 TMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPL 583
+ D EG T LHLACD + + L+ GA+I + TPL
Sbjct: 166 NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPL 209
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 38/68 (55%)
Query: 550 LHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN 609
LH A D + +LE LL GA+INA D +TPL + G KLLL++GAD
Sbjct: 39 LHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG 98
Query: 610 REGKTSLE 617
+G T+LE
Sbjct: 99 PDGLTALE 106
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 37/68 (54%)
Query: 550 LHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN 609
LH A D + +LE LL GA+INA D +TPL + G KLLL++GAD
Sbjct: 44 LHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG 103
Query: 610 REGKTSLE 617
+G T+ E
Sbjct: 104 PDGLTAFE 111
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D+EG T L A + +G+ E LL G+N+N D G TPL I+ G + + LL G
Sbjct: 65 DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHG 124
Query: 603 ADPRAVNREGKTSLELAVESNFADSEVLAIL 633
A+ N EG+T L V S + SE++ L
Sbjct: 125 ANVNDRNLEGETP--LIVASKYGRSEIVKKL 153
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 564 LLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESN 623
LL++GAN+N + G TPL G++ K LL GAD A + G T+ A
Sbjct: 119 FLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTA--EASARI 176
Query: 624 FADSEVLAILSD 635
F EV+ I ++
Sbjct: 177 FGRQEVIKIFTE 188
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 38/70 (54%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G T LH AC+ + ++ELLLQ+ A +N T + +PLH G KLLL+ G
Sbjct: 40 DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG 99
Query: 603 ADPRAVNREG 612
A AVN G
Sbjct: 100 ASRNAVNIFG 109
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 37/81 (45%)
Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
G TLLH+A DI +E LLQ G++ N D G TPLH G +LLL A
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 606 RAVNREGKTSLELAVESNFAD 626
+ + L A ++ D
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVD 90
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 550 LHLACDSADIGMLELLLQYGANINATDSRGLTPL 583
LH A + + +++LLL YGA+ NA + GL P+
Sbjct: 80 LHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 40/75 (53%)
Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 604
+G T LH A + ++ LL GA++NA G TPLH G A KLLL +GAD
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 605 PRAVNREGKTSLELA 619
A +++G T LA
Sbjct: 68 VNARSKDGNTPEHLA 82
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 33/63 (52%)
Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 604
+G T LHLA + +++LLL GA++NA G TP H G KLL +GAD
Sbjct: 41 DGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
Query: 605 PRA 607
A
Sbjct: 101 VNA 103
Score = 37.0 bits (84), Expect = 0.030, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 579 GLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFAD 626
G TPLH G A K LL++GAD A +++G T L LA ++ A+
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAE 56
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein
Length = 140
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 28/156 (17%)
Query: 304 KSEKPIDVLRRVCG---NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRS 360
+ EK + +LR + G N +C DC P + ++ +G VC CSG R L +V+S
Sbjct: 8 QEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNP-PHRVKS 66
Query: 361 LTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGK 420
+++ + I Q GN +W L RS+
Sbjct: 67 ISMT--TFTQQEIEFLQKHGNEVCKQIWLGLFDDRSS---------------------AI 103
Query: 421 PSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSV 456
P D VKE F+ KY +K + P+ + + SV
Sbjct: 104 PDFRDPQKVKE-FLQEKYEKKRWYVPPEQAKVVASV 138
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE 621
+ +L+ GA++NA D G TPLH G ++LL GAD A ++ GKT+ +++++
Sbjct: 18 VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISID 77
Query: 622 SNFAD-SEVL 630
+ D +E+L
Sbjct: 78 NGNEDLAEIL 87
Score = 37.0 bits (84), Expect = 0.031, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLL 598
D +G T LHLA + ++E+LL+ GA++NA D G T I G A++L
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE 621
+ +L+ GA++ A D G TPLH G KLLL GAD A ++ GKT+ +++++
Sbjct: 40 VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID 99
Query: 622 SNFAD-SEVL 630
+ D +E+L
Sbjct: 100 NGNEDLAEIL 109
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLL 598
D G T LHLA + + +++LLL+ GA++ A D G T I G A++L
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE 621
+ +L+ GA++ A D G TPLH G KLLL GAD A ++ GKT+ +++++
Sbjct: 22 VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISID 81
Query: 622 SNFAD-SEVL 630
+ D +E+L
Sbjct: 82 NGNEDLAEIL 91
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLL 598
D G T LHLA + + +++LLL+ GA++NA D G T I G A++L
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%)
Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGA 603
EG T LH A + +++ L+Q+G N+NA DS G TPLH K L+ GA
Sbjct: 69 EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 576 DSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESN 623
+ G+T LH + G K L+ G + A + +G T L A N
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN 114
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%)
Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGA 603
EG T LH A + +++ L+Q+G N+NA DS G TPLH K L+ GA
Sbjct: 69 EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 576 DSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESN 623
+ G+T LH + G K L+ G + A + +G T L A N
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN 114
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSR-GLTPLHRCILRGKAMFAKLLLT 600
++ +G T LH+A D M+ LL GA++N + G TPLH + A +LLL
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
Query: 601 RGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
GADP A G+T L A+ + +LA L +HG
Sbjct: 214 AGADPTARMYGGRTPLGSAL---LRPNPILARLLRAHG 248
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGA 603
G T LHLA ++ +LELLL+ GA+ A G TPL +LR + A+LL GA
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 572 INATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNRE----GKTSLELAVESNFA 625
+ A + G TPLH ++ A +LL GAD +N+ G+T L LAVE+ A
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD---LNKPEPTCGRTPLHLAVEAQAA 205
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 545 EGCTLLHLACDSADIGMLELLLQYGAN---INATDSRGLTPLHRCILRGKAMFAKLLLTR 601
+G T LHLA L+ LL + A ++ + G T LH + G+A + L
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67
Query: 602 GADPRAVNREGKTSLELA 619
GA R G T+L LA
Sbjct: 68 GAGVLVAERGGHTALHLA 85
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSR-GLTPLHRCILRGKAMFAKLLLT 600
++ +G T LH+A D M+ LL GA++N + G TPLH + A +LLL
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
Query: 601 RGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
GADP A G+T L A+ + +LA L +HG
Sbjct: 214 AGADPTARMYGGRTPLGSAL---LRPNPILARLLRAHG 248
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGA 603
G T LHLA ++ +LELLL+ GA+ A G TPL +LR + A+LL GA
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 572 INATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNRE----GKTSLELAVESNFA 625
+ A + G TPLH ++ A +LL GAD +N+ G+T L LAVE+ A
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD---LNKPEPTCGRTPLHLAVEAQAA 205
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 545 EGCTLLHLACDSADIGMLELLLQYGAN---INATDSRGLTPLHRCILRGKAMFAKLLLTR 601
+G T LHLA L+ LL + A ++ + G T LH + G+A + L
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67
Query: 602 GADPRAVNREGKTSLELA 619
GA R G T+L LA
Sbjct: 68 GAGVLVAERGGHTALHLA 85
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 548 TLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA 607
T LH+A ++E+LL++GA++NA D +T LH +LL+ GAD
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT 128
Query: 608 VNREGKTSLELAVESNFAD-SEVL 630
++ KT+ ++++++ D +E+L
Sbjct: 129 QSKFCKTAFDISIDNGNEDLAEIL 152
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G + LHLA E+LL+ G + +A TPLH G A ++LL G
Sbjct: 31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHG 90
Query: 603 ADPRAVNREGKTSLELAVESNFADSEVLAIL 633
AD A + T+L A E N EV+ +L
Sbjct: 91 ADVNAKDMLKMTALHWATEHNH--QEVVELL 119
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%)
Query: 550 LHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN 609
L LAC ++++LL G ++N D G TPL + K+LL GADP
Sbjct: 89 LSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET 148
Query: 610 REGKTSLELAV 620
G S++LAV
Sbjct: 149 DSGYNSMDLAV 159
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 572 INATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFAD 626
IN TD G TPL G+ + LL GADP+ + + +++L LA + D
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 99
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%)
Query: 550 LHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN 609
L LAC ++++LL G ++N D G TPL + K+LL GADP
Sbjct: 73 LSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET 132
Query: 610 REGKTSLELAVESNF 624
G S++LAV +
Sbjct: 133 DSGYNSMDLAVALGY 147
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 572 INATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFAD 626
IN TD G TPL G+ + LL GADP+ + + +++L LA + D
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 83
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%)
Query: 550 LHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN 609
L LAC ++++LL G ++N D G TPL + K+LL GADP
Sbjct: 71 LSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET 130
Query: 610 REGKTSLELAVESNF 624
G S++LAV +
Sbjct: 131 DSGYNSMDLAVALGY 145
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 572 INATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFAD 626
IN TD G TPL G+ + LL GADP+ + + +++L LA + D
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 81
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip
Length = 134
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 309 IDVLRRVCG---NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDV 365
+ +LR + G N +C DC P + ++ +G VC CSG R L +V+S+++
Sbjct: 8 LKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISM-- 64
Query: 366 KVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPP 405
+ I Q GN +W L RS+ D P
Sbjct: 65 TTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDP 104
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 34/77 (44%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G + LH AC ++E+L+ GA IN + TPLH G + LL
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 90
Query: 603 ADPRAVNREGKTSLELA 619
AD AVN G L A
Sbjct: 91 ADINAVNEHGNVPLHYA 107
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 548 TLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA 607
T LHLA +++ LLQY A+INA + G PLH G+ A+ L+ GA
Sbjct: 69 TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 128
Query: 608 VNREGKTSLELA 619
N+ G+ ++ A
Sbjct: 129 CNKYGEMPVDKA 140
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 571 NINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFAD 626
++N D G +PLH G++ ++L+ RGA +NR T L LA D
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRD 81
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 604
EG T LH A A+ +++ L+ GAN+N+ DS G TPLH + L+ GA
Sbjct: 53 EGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAA 112
Query: 605 PRAVN-REGKTSLE 617
A +G T+ E
Sbjct: 113 IFATTLSDGATAFE 126
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 550 LHLACDSADIGMLELLLQYGANIN---ATDSRGLTPLHRCILRGKAMFAKLLLTRGADPR 606
L L D+A G LE++ Q +N + G+T LH I L+T GA+
Sbjct: 22 LVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVN 81
Query: 607 AVNREGKTSLELAVESN 623
+ + G T L A N
Sbjct: 82 SPDSHGWTPLHCAASCN 98
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 34/77 (44%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G + LH AC ++E+L+ GA IN + TPLH G + LL
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 95
Query: 603 ADPRAVNREGKTSLELA 619
AD AVN G L A
Sbjct: 96 ADINAVNEHGNVPLHYA 112
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 548 TLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA 607
T LHLA +++ LLQY A+INA + G PLH G+ A+ L+ GA
Sbjct: 74 TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 133
Query: 608 VNREGKTSLELA 619
N+ G+ ++ A
Sbjct: 134 CNKYGEMPVDKA 145
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 571 NINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFAD 626
++N D G +PLH G++ ++L+ RGA +NR T L LA D
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRD 86
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 548 TLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA 607
T L+LAC++ ++ LL+ GA++N + +PLH + A LL+ GAD +A
Sbjct: 192 TPLYLACENQQRACVKKLLESGADVNQGKGQD-SPLHAVVRTASEELACLLMDFGADTQA 250
Query: 608 VNREGKTSLEL 618
N EGK +EL
Sbjct: 251 KNAEGKRPVEL 261
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 550 LHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGA 603
LH AC + +++LL++GA +N + TPL + G LLL GA
Sbjct: 96 LHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGA 149
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%)
Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
G T + A + + +++LLL G++IN D+ LH G A++LL D
Sbjct: 111 GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170
Query: 606 RAVNREGKTSLELAVESNFADSEVLAILSDS 636
AVN G + L +A N D VL + DS
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDS 201
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D E LH A S + + E+LL +++A + G +PLH + L L+R
Sbjct: 141 DNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRD 200
Query: 603 ADPRAVNREGKTSLELA 619
+D N+EG+T L+ A
Sbjct: 201 SDVTLKNKEGETPLQCA 217
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 550 LHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGA--DPRA 607
LH A ++ + + +L+Q GANI+ TPL K L+ GA DP+
Sbjct: 15 LHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK- 73
Query: 608 VNREGKTSLELAVE 621
+ EG T L LA +
Sbjct: 74 -DAEGSTCLHLAAK 86
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 540 TMDDLEGCTLLHLACDSADIG----MLELLLQYGANINATDSRGLTPLHRCILRGKAMFA 595
T D +G T LH+A ++ ++ L Q G ++ ++ TPLH ++
Sbjct: 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV 62
Query: 596 KLLLTRGADPRAVNREGKTSLELAVE 621
+LL+T GA P A++R G+T+ LA E
Sbjct: 63 RLLVTAGASPMALDRHGQTAAHLACE 88
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 549 LLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAV 608
L+H A ++ + M++LLLQ+GAN+NA G + LH RG + L+ GAD
Sbjct: 154 LIH-AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK 212
Query: 609 NREGKTSLELA 619
N T L +A
Sbjct: 213 NCHNDTPLMVA 223
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGA----NINATDSRGLTPLHRCILRGKAMFAKLL 598
D G T HLAC+ L LL A ++ A + GLT LH + +LL
Sbjct: 76 DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 135
Query: 599 LTRGADPRAVN-REGKTSLELAVESN 623
L RGAD AV+ + G++ L AVE+N
Sbjct: 136 LERGADIDAVDIKSGRSPLIHAVENN 161
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINATDSR-GLTPLHRCILRGKAMFAKLLLTRGA 603
+G T LH+A ++ ++LLL+ GA+I+A D + G +PL + +LLL GA
Sbjct: 115 DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA 174
Query: 604 DPRAVNREGKTSLELA 619
+ A G ++L A
Sbjct: 175 NVNAQMYSGSSALHSA 190
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 548 TLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA 607
T L+LAC++ ++ LL+ GA++N + +PLH A LL+ GAD +A
Sbjct: 136 TPLYLACENQQRACVKKLLESGADVNQGKGQD-SPLHAVARTASEELACLLMDFGADTQA 194
Query: 608 VNREGKTSLEL 618
N EGK +EL
Sbjct: 195 KNAEGKRPVEL 205
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 550 LHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGA 603
LH AC + +++LL++GA +N + TPL + G LLL GA
Sbjct: 40 LHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGA 93
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 35/112 (31%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPL------------------- 583
D EGC+ +HLA ++ L+ G +++ D G+TPL
Sbjct: 106 DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF 165
Query: 584 ----------------HRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELA 619
H +L G LLL GA+ A N +G+++L+LA
Sbjct: 166 NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLA 217
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSR-GLTPLHRCILRGKAMFAKLLLTR 601
D E TLLH A + I +++ + GA ++ TPLH +G L+
Sbjct: 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY 98
Query: 602 GADPRAVNREGKTSLELAVESNFADSEVLAIL 633
GADP ++ EG + + LA + F + ++A L
Sbjct: 99 GADPSLIDGEGCSCIHLAAQ--FGHTSIVAYL 128
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 536 SEGQTMDDLEG---CTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKA 592
S+G +D L G T LH A + M+ L++YGA+ + D G + +H G
Sbjct: 63 SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHT 122
Query: 593 MFAKLLLTRGADPRAVNREGKTSLELA 619
L+ +G D +++ G T L A
Sbjct: 123 SIVAYLIAKGQDVDMMDQNGMTPLMWA 149
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 12/103 (11%)
Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGA-- 603
G T LA + + +L+L L GA++N D G T + GK K L RGA
Sbjct: 92 GATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 151
Query: 604 --------DPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
D + + G T+L A E EVL IL D G
Sbjct: 152 NLRRKTKEDQERLRKGGATALMDAAEKGHV--EVLKILLDEMG 192
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 546 GCTLLHLACDSADIGMLELLL-QYGANINATDSRGLTPLHRCILRGK----AMFAKLLLT 600
G T L A + + +L++LL + GA++NA D+ G L +L LLL
Sbjct: 168 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 227
Query: 601 RGADPRAVNREGKTSLELAVE 621
GAD GKT L LAVE
Sbjct: 228 HGADVNVRGERGKTPLILAVE 248
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 542 DDLEGCTLLH--LACDSADI-GMLELLLQYGANINATDSRGLTPLHRCILRGK-AMFAKL 597
D++ L+H L+ D +D+ + LLL +GA++N RG TPL + + + +L
Sbjct: 199 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 258
Query: 598 LLTRGADPRAVNREGKTSLELAVE 621
L + + +GKT+L LAVE
Sbjct: 259 LEQEHIEINDTDSDGKTALLLAVE 282
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
G T LH A + ++ELLL++GA+ G TP + G KL L++GAD
Sbjct: 59 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADV 118
Query: 606 RAVNREGKTS-LELAV 620
+ G T+ +E AV
Sbjct: 119 NECDFYGFTAFMEAAV 134
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDS-RGLTPLHRCILRGKAMFAKLLLTRGAD 604
G T LHLA +G++ELL+ GA++NA + G T LH + LLL GAD
Sbjct: 117 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 176
Query: 605 PRAVNREGKTSLELA 619
V +G + +L
Sbjct: 177 VNRVTYQGYSPYQLT 191
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 541 MDDLEGCTLLHLACDSADIGMLELLLQYGAN------INATDSRGLTPLHRCILRGKAMF 594
+ D G T LHLAC+ + + +L Q + AT+ G T LH + G
Sbjct: 73 LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI 132
Query: 595 AKLLLTRGADPRAVNR-EGKTSLELAVESNFAD 626
+LL++ GAD A G+T+L LAV+ D
Sbjct: 133 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 165
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 545 EGCTLLHLACDSADIGM-LELLLQYGANI---NATDSRGLTPLHRCILRGKAMFAKLLLT 600
+G + LHLA + + +E++ Q ++ N ++ TPLH ++ + A+ LL
Sbjct: 7 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 66
Query: 601 RGADPRAVNREGKTSLELAVE 621
G DP + G T L LA E
Sbjct: 67 AGCDPELRDFRGNTPLHLACE 87
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 548 TLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP-- 605
T LHLA + + E LL G + D RG TPLH +G +L P
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 106
Query: 606 ----RAVNREGKTSLELA 619
+A N G T L LA
Sbjct: 107 HSILKATNYNGHTCLHLA 124
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 12/103 (11%)
Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGA-- 603
G T LA + + +L+L L GA++N D G T + GK K L RGA
Sbjct: 72 GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 131
Query: 604 --------DPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
D + + G T+L A E EVL IL D G
Sbjct: 132 NLRRKTKEDQERLRKGGATALMDAAEKGHV--EVLKILLDEMG 172
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 546 GCTLLHLACDSADIGMLELLL-QYGANINATDSRGLTPLHRCILRGK----AMFAKLLLT 600
G T L A + + +L++LL + GA++NA D+ G L +L LLL
Sbjct: 148 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 207
Query: 601 RGADPRAVNREGKTSLELAVE 621
GAD GKT L LAVE
Sbjct: 208 HGADVNVRGERGKTPLILAVE 228
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 542 DDLEGCTLLH--LACDSADI-GMLELLLQYGANINATDSRGLTPLHRCILRGK-AMFAKL 597
D++ L+H L+ D +D+ + LLL +GA++N RG TPL + + + +L
Sbjct: 179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238
Query: 598 LLTRGADPRAVNREGKTSLELAVE 621
L + + +GKT+L LAVE
Sbjct: 239 LEQEHIEINDTDSDGKTALLLAVE 262
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
G T LH A + ++ELLL++GA+ G TP + G KL L++GAD
Sbjct: 39 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV 98
Query: 606 RAVNREGKTS-LELAV 620
+ G T+ +E AV
Sbjct: 99 NECDFYGFTAFMEAAV 114
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 541 MDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 600
+ D G + +H A + + L++L+++GA++N D G P+H + G L
Sbjct: 69 VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 128
Query: 601 RGADPRAVNREGKTSLELAVESNFAD 626
+D + G T LELA++ D
Sbjct: 129 E-SDLHRRDARGLTPLELALQRGAQD 153
Score = 36.2 bits (82), Expect = 0.064, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAV- 620
LELL Q GA+ N D+ G +P+H G K+L+ GAD + G + LAV
Sbjct: 58 LELLKQ-GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQ 116
Query: 621 ESNFADSEVLAILSDSH 637
E + A LA SD H
Sbjct: 117 EGHTAVVSFLAAESDLH 133
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 541 MDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 600
+ D G + +H A + + L++L+++GA++N D G P+H + G L
Sbjct: 63 VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 122
Query: 601 RGADPRAVNREGKTSLELAVESNFAD 626
+D + G T LELA++ D
Sbjct: 123 E-SDLHRRDARGLTPLELALQRGAQD 147
Score = 35.8 bits (81), Expect = 0.070, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAV- 620
LELL Q GA+ N D+ G +P+H G K+L+ GAD + G + LAV
Sbjct: 52 LELLKQ-GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQ 110
Query: 621 ESNFADSEVLAILSDSH 637
E + A LA SD H
Sbjct: 111 EGHTAVVSFLAAESDLH 127
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G + +H A + + L++L+++GA++NA DS G P+H I G + L
Sbjct: 73 DASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE- 131
Query: 603 ADPRAVNREGKTSLELA 619
+D + G T LELA
Sbjct: 132 SDLHHRDASGLTPLELA 148
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 565 LLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAV-ESN 623
LL+ GA+ N D+ G +P+H G K+L+ GAD A++ G + LA+ E +
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 121
Query: 624 FADSEVLAILSDSH 637
+ LA SD H
Sbjct: 122 SSVVSFLAPESDLH 135
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D G + +H A + + L++L+++GA++NA DS G P+H I G + L
Sbjct: 71 DASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE- 129
Query: 603 ADPRAVNREGKTSLELA 619
+D + G T LELA
Sbjct: 130 SDLHHRDASGLTPLELA 146
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 565 LLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAV-ESN 623
LL+ GA+ N D+ G +P+H G K+L+ GAD A++ G + LA+ E +
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 119
Query: 624 FADSEVLAILSDSH 637
+ LA SD H
Sbjct: 120 SSVVSFLAPESDLH 133
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDS-RGLTPLHRCILRGKAMFAKLLLTRGAD 604
G T LHLA +G++ELL+ GA++NA + G T LH + LLL GAD
Sbjct: 114 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 173
Query: 605 PRAVNREGKTSLEL 618
V +G + +L
Sbjct: 174 VNRVTYQGYSPYQL 187
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 541 MDDLEGCTLLHLACDSADIGMLELLLQYGAN------INATDSRGLTPLHRCILRGKAMF 594
+ D G T LHLAC+ + + +L Q + AT+ G T LH + G
Sbjct: 70 LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI 129
Query: 595 AKLLLTRGADPRAVNR-EGKTSLELAVESNFAD 626
+LL++ GAD A G+T+L LAV+ D
Sbjct: 130 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 162
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 570 ANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE 621
A +N ++ TPLH ++ + A+ LL G DP + G T L LA E
Sbjct: 33 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE 84
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 548 TLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP-- 605
T LHLA + + E LL G + D RG TPLH +G +L P
Sbjct: 44 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 103
Query: 606 ----RAVNREGKTSLELA 619
+A N G T L LA
Sbjct: 104 HSILKATNYNGHTCLHLA 121
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 550 LHLACDSADIGMLELLLQYGAN-INATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAV 608
+H ++ L+ L+ G N +N D RG TPL G+ + LL GADP +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 609 NREGKTSLELAVESNFAD 626
+E +++L LA + D
Sbjct: 66 AKERESALSLASTGGYTD 83
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 33/75 (44%)
Query: 550 LHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN 609
L LA ++ LLL+ +IN D G TPL + + LL RGAD
Sbjct: 73 LSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEA 132
Query: 610 REGKTSLELAVESNF 624
G T ++LAV +
Sbjct: 133 DSGYTPMDLAVALGY 147
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 550 LHLACDSADIGMLELLLQYGAN-INATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAV 608
+H ++ L+ L+ G N +N D RG TPL G+ + LL GADP +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 609 NREGKTSLELAVESNFAD 626
+E +++L LA + D
Sbjct: 66 AKERESALSLASTGGYTD 83
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 33/75 (44%)
Query: 550 LHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN 609
L LA ++ LLL+ +IN D G TPL + + LL RGAD
Sbjct: 73 LSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEA 132
Query: 610 REGKTSLELAVESNF 624
G T ++LAV +
Sbjct: 133 DSGYTPMDLAVALGY 147
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 604
+G T LHLA + + L++ GA++ D PLHR G +LL G
Sbjct: 106 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK- 164
Query: 605 PRAVN---REGKTSLELAVESNFADSEVLAI 632
AVN ++G T L A+ D+ VL +
Sbjct: 165 -SAVNWQDKQGWTPLFHALAEGHGDAAVLLV 194
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCI-LRGKAMFAKLLLTR 601
D G T LHLA + + LL+ A+ N D+ G TPLH + + +F L+ R
Sbjct: 54 DRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 602 GADPRAVNREGKTSLELAV 620
D A +G T L LA
Sbjct: 114 ATDLDARMHDGTTPLILAA 132
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 604
+G T L LA A GMLE L+ A++NA D G + LH A +LL GA+
Sbjct: 123 DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 182
Query: 605 PRAVNREGKTSLELAV-ESNFADSEVL 630
N +T L LA E ++ ++VL
Sbjct: 183 KDMQNNREETPLFLAAREGSYETAKVL 209
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 604
+G T LHLA + + L++ GA++ D PLHR G +LL G
Sbjct: 106 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK- 164
Query: 605 PRAVN---REGKTSLELAVESNFADSEVLAI 632
AVN ++G T L A+ D+ VL +
Sbjct: 165 -SAVNWQDKQGWTPLFHALAEGHGDAAVLLV 194
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 604
+G T LHLA + + L++ GA++ D PLHR G +LL G
Sbjct: 106 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK- 164
Query: 605 PRAVN---REGKTSLELAVESNFADSEVLAI 632
AVN ++G T L A+ D+ VL +
Sbjct: 165 -SAVNWQDKQGWTPLFHALAEGHGDAAVLLV 194
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCI-LRGKAMFAKLLLTR 601
D G T LHLA + + LL+ A+ N D+ G TPLH + + +F L+ R
Sbjct: 22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81
Query: 602 GADPRAVNREGKTSLELAV 620
D A +G T L LA
Sbjct: 82 ATDLDARMHDGTTPLILAA 100
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 604
+G T L LA A GMLE L+ A++NA D G + LH A +LL GA+
Sbjct: 91 DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 150
Query: 605 PRAVNREGKTSLELAV-ESNFADSEVL 630
N +T L LA E ++ ++VL
Sbjct: 151 KDMQNNREETPLFLAAREGSYETAKVL 177
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 604
+G T L LA A GMLE L+ A++NA D G + LH A +LL GA+
Sbjct: 88 DGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 147
Query: 605 PRAVNREGKTSLELAV-ESNFADSEVL 630
N + +T L LA E ++ ++VL
Sbjct: 148 KDMQNNKEETPLFLAAREGSYETAKVL 174
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCI-LRGKAMFAKLLLTR 601
D G T LHLA + + LL+ A+ D+ G TPLH + + +F LL R
Sbjct: 19 DRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNR 78
Query: 602 GADPRAVNREGKTSLELAV 620
D A +G T L LA
Sbjct: 79 ATDLDARMHDGTTPLILAA 97
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCI-LRGKAMFAKLLLTR 601
D G T LHLA + + LL+ A+ N D+ G TPLH + + +F L+ R
Sbjct: 55 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 114
Query: 602 GADPRAVNREGKTSLELAV 620
D A +G T L LA
Sbjct: 115 ATDLDARMHDGTTPLILAA 133
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 604
+G T L LA A GMLE L+ A++NA D G + LH A +LL GA+
Sbjct: 124 DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 183
Query: 605 PRAVNREGKTSLELAV-ESNFADSEVL 630
N +T L LA E ++ ++VL
Sbjct: 184 KDMQNNREETPLFLAAREGSYETAKVL 210
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 36.2 bits (82), Expect = 0.052, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 604
+G T L LA A GMLE L+ A++NA D G + LH A +LL GA+
Sbjct: 14 DGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 73
Query: 605 PRAVNREGKTSLELAV-ESNFADSEVL 630
N + +T L LA E ++ ++VL
Sbjct: 74 KDMQNNKEETPLFLAAREGSYETAKVL 100
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCI-LRGKAMFAKLLLTR 601
D G T LHLA + + LL+ A+ N D+ G TPLH + + +F L+ R
Sbjct: 54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 602 GADPRAVNREGKTSLELAV 620
D A +G T L LA
Sbjct: 114 ATDLDARMHDGTTPLILAA 132
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 604
+G T L LA A GMLE L+ A++NA D G + LH A +LL GA+
Sbjct: 123 DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 182
Query: 605 PRAVNREGKTSLELAV-ESNFADSEVL 630
N +T L LA E ++ ++VL
Sbjct: 183 KDMQNNREETPLFLAAREGSYETAKVL 209
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 35.8 bits (81), Expect = 0.071, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 541 MDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 600
+ D G ++H A + + L+ LL++ A++N D+ G PLH G + L+
Sbjct: 65 LKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 601 RGADPRA-VNREGKTSLELA 619
A N +G T+ +LA
Sbjct: 125 HTASNVGHRNHKGDTACDLA 144
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 534 GTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCI-LRGKA 592
G TMD G T LHLA A + LL GA+ N+ D+ G TPLH +
Sbjct: 40 GAELNATMDK-TGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMG 98
Query: 593 MFAKLLLTRGADPRAVNREGKTSLELAV 620
+F LL R + A +G T L LA
Sbjct: 99 VFQILLRNRATNLNARMHDGTTPLILAA 126
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 604
+G T L LA A GM+E L+ A+INA D+ G T LH +LL A+
Sbjct: 117 DGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN 176
Query: 605 PRAVNREGKTSLELAVE-----------SNFADSEV 629
A + + +T L LA NFA+ E+
Sbjct: 177 RDAQDDKDETPLFLAAREGSYEASKALLDNFANREI 212
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 565 LLQYGANINAT-DSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESN 623
LL GA +NAT D G T LH +A AK LL GAD + + G+T L AV ++
Sbjct: 36 LLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAAD 95
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLE-LLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
D G T L+ AC ++E L Q +N + G T LH +G A +LLL +
Sbjct: 103 DKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK 162
Query: 602 GADPRAVNREGKTSLELAVES 622
GA N E K + + A +
Sbjct: 163 GARTDLRNIEKKLAFDXATNA 183
>pdb|2Q13|A Chain A, Crystal Structure Of Bar-Ph Domain Of Appl1
Length = 385
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 188 STIKVDADQSDLRFCFRIIS--PTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPE 243
S + VD + D R+CF+I S K+ LQAES D +WI I + + S+ PE
Sbjct: 329 SVMAVDCE--DRRYCFQITSFDGKKSSILQAESKKDHEEWICTINNISKQIYLSENPE 384
>pdb|2Z0O|A Chain A, Crystal Structure Of Appl1-Bar-Ph Domain
Length = 387
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 195 DQSDLRFCFRIIS--PTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPE 243
D D R+CF+I S K+ LQAES D +WI I + + S+ PE
Sbjct: 336 DCEDRRYCFQITSFDGKKSSILQAESKKDHEEWICTINNISKQIYLSENPE 386
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 565 LLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN 609
LL+ GAN NA +S G P+ + ++ G A A+LLL GA+P +
Sbjct: 31 LLEAGANPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPNCAD 74
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 541 MDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 600
+ D G ++H A + + L+ LL++ A++N D+ G PLH G + L+
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 601 RGADPRA-VNREGKTSLELA 619
A N +G T+ +LA
Sbjct: 125 HTASNVGHRNHKGDTACDLA 144
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 541 MDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 600
+ D G ++H A + + L+ LL++ A++N D+ G PLH G + L+
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 601 RGADPRA-VNREGKTSLELA 619
A N +G T+ +LA
Sbjct: 125 HTASNVGHRNHKGDTACDLA 144
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 545 EGCTLLHLACDSADIGMLELLL-QYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGA 603
+G T LH A ++ +++ L+ + G+N + D G TP+ G+ L+ +GA
Sbjct: 278 KGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGA 337
Query: 604 DPRAVNREGKTSLELAVESN 623
AV+ T+ +LA +N
Sbjct: 338 SVEAVDATDHTARQLAQANN 357
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 569 GANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAV 620
GA++NA D TPL +L + L GADP N+ +++L A
Sbjct: 156 GADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAA 207
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 541 MDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 600
+ D G ++H A + + L+ LL++ A++N D+ G PLH G + L+
Sbjct: 65 LKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 601 RGADPRA-VNREGKTSLELA 619
A N +G T+ +LA
Sbjct: 125 HTASNVGHRNHKGDTACDLA 144
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 537 EGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDS-------------RGLTPL 583
E T + EG T LH+A + ++ ++ LL GA+++A + G PL
Sbjct: 66 EPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPL 125
Query: 584 HRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAV 620
G +LL+ GAD RA + G T L + +
Sbjct: 126 SFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILI 162
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLH--RCILR 589
G T LH+A ++E L++ GA+I D RGLT L R IL+
Sbjct: 111 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK 156
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 564 LLLQYGANINATDSRG-LTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE 621
LL + GA+++ D RG LT LH + + L+ GAD + G T+LELA E
Sbjct: 95 LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 153
>pdb|2QBY|B Chain B, Crystal Structure Of A Heterodimer Of Cdc6ORC1 INITIATORS
Bound To Origin Dna (From S. Solfataricus)
Length = 384
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 18/143 (12%)
Query: 325 GAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVK--VWEPSVITLFQSLGNA 382
G P+ +SL G L NLG +I K+++ T +++ ++ V TL + G
Sbjct: 94 GTPQAVLSSLA-GKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRG-- 150
Query: 383 FANSVWEELLQSRSAFHVDLTPPSLHKSD--KPQLL------LMGKPSHSDSISVKEKFI 434
+ V +LL+S + V + ++ D +P++L ++ KP ++ + KFI
Sbjct: 151 -GDIVLYQLLRSDANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQL----KFI 205
Query: 435 HAKYAEKLFVRKPKDNQYLHSVA 457
+KYAE ++ D++ L +A
Sbjct: 206 LSKYAEYGLIKGTYDDEILSYIA 228
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLH--RCILR 589
G T LH+A ++E L++ GA+I D RGLT L R IL+
Sbjct: 110 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK 155
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 564 LLLQYGANINATDSRG-LTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE 621
LL + GA+++ D RG LT LH + + L+ GAD + G T+LELA E
Sbjct: 94 LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 152
>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human
Length = 117
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 91 SAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYY 131
S + G + G+L K++S+ W +R+FVL R + YY
Sbjct: 3 SGSSGNAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYY 43
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 541 MDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 600
+ D G ++H A + + L+ LL+ A++N D+ G PLH G + L+
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 601 RGADPRA-VNREGKTSLELA 619
A N +G T+ +LA
Sbjct: 125 HTASNVGHRNHKGDTACDLA 144
>pdb|1V89|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Human Kiaa0053 Protein
Length = 118
Score = 32.7 bits (73), Expect = 0.72, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 92 AAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQ 135
+ G I+ G+L K+ S ++ +W++R+FVL ++ LYYY+ +
Sbjct: 1 GSSGSSGPIKMGWLKKQRSIVK-NWQQRYFVLRAQ-QLYYYKDE 42
>pdb|4H8S|A Chain A, Crystal Structure Of Human Appl2barph Domain
pdb|4H8S|B Chain B, Crystal Structure Of Human Appl2barph Domain
pdb|4H8S|C Chain C, Crystal Structure Of Human Appl2barph Domain
pdb|4H8S|D Chain D, Crystal Structure Of Human Appl2barph Domain
Length = 407
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 188 STIKVDADQSDLRFCFRIISPT--KNYTLQAESALDQMDWIEKITGVIASLLSSQAPE 243
S + VD + D R+CF+I +P LQAES + +WI I + + + PE
Sbjct: 352 SVMAVDCE--DRRYCFQITTPNGKSGIILQAESRKENEEWICAINNISRQIYLTDNPE 407
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query: 550 LHLACDSADIGM-----------LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLL 598
+H+ S+D G+ + LL+ GA+ NA + G P+ + ++ G A A+LL
Sbjct: 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPI-QVMMMGSAQVAELL 63
Query: 599 LTRGADPRAVN 609
L GA+P +
Sbjct: 64 LLHGAEPNCAD 74
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 589 RGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAI 632
RG+ + LL GADP A+NR G+ +++ + + +E+L +
Sbjct: 22 RGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAELLLL 65
>pdb|2DKP|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Protein Family A Member 5 From Human
Length = 128
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 99 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQ 135
+R+G+L K+ S WK+R+FVL S L+YYR +
Sbjct: 21 VVRRGWLYKQDSTGMKLWKKRWFVL-SDLCLFYYRDE 56
>pdb|1U5F|A Chain A, Crystal Structure Of The Ph Domain Of Skap-Hom With 8
Vector-Derived N-Terminal Residues
Length = 148
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 167 HYHGGVHDEKSAARHTVN----LLTSTIKVDADQSDLRFCFRIISPTKN-YTLQAESALD 221
+Y+G D++ ++ + +T++ D + CF I +P K Y A S D
Sbjct: 50 YYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKD---CCFEICAPDKRIYQFTAASPKD 106
Query: 222 QMDWIEKITGVIASLLSSQAPE 243
+W++++ ++ L S PE
Sbjct: 107 AEEWVQQLKFILQDLGSDVIPE 128
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 565 LLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN 609
LL+ GA NA +S G P+ + ++ G A A+LLL GA+P +
Sbjct: 31 LLEAGALPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPNCAD 74
>pdb|1U5K|A Chain A, Recombinational Repair Protein Reco
pdb|1U5K|B Chain B, Recombinational Repair Protein Reco
pdb|1W3S|A Chain A, The Crystal Structure Of Reco From Deinococcus
Radiodurans.
pdb|1W3S|B Chain B, The Crystal Structure Of Reco From Deinococcus
Radiodurans.
pdb|2V1C|C Chain C, Crystal Structure And Mutational Study Of Recor Provide
Insight Into Its Role In Dna Repair
Length = 244
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 320 RCADCGAPEPDWASLNLGVLVCIECSGV 347
RCA CGAP+P+ G L+C +C+ +
Sbjct: 152 RCARCGAPDPEHPDPLGGQLLCSKCAAL 179
>pdb|2ELB|A Chain A, Crystal Structure Of The Bar-Ph Domain Of Human Appl1
Length = 396
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 195 DQSDLRFCFRIIS--PTKNYTLQAESALDQMDWIEKITGV 232
D D R+CF+I S K+ LQAES D +WI I +
Sbjct: 354 DCEDRRYCFQITSFDGKKSSILQAESKKDHEEWICTINNI 393
>pdb|1P6S|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Human Protein Kinase B Beta (PkbAKT)
Length = 111
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 96 KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQ 135
+V I++G+L KR ++ W+ R+F+L S G Y+++
Sbjct: 3 EVSVIKEGWLHKRGEYIK-TWRPRYFLLKSDGSFIGYKER 41
>pdb|2DA0|A Chain A, Solution Structure Of The Ph Domain Of Pip2-Dependent Arf1
Gtpase-Activating Protein From Human
Length = 114
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 183 VNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKIT 230
+NLLT +K +A+ + F +IS + Y QAE D + WI +T
Sbjct: 53 LNLLTCQVKPNAED---KKSFDLISHNRTYHFQAEDEQDYVAWISVLT 97
>pdb|1UPQ|A Chain A, Crystal Structure Of The Pleckstrin Homology (Ph) Domain
Of Pepp1
pdb|1UPR|A Chain A, Crystal Structure Of The Pepp1 Pleckstrin Homology Domain
In Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 123
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 102 QGYLSKRSSNLRGDWKRRFFVLDSRGMLYY 131
+G+L K+ S+ WKRR+FVL + YY
Sbjct: 14 RGWLHKQDSSGLRLWKRRWFVLSGHCLFYY 43
>pdb|3TFM|A Chain A, Myosin X Ph1n-Ph2-Ph1c Tandem
Length = 228
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 94 KGKVQTIRQGYLSKR---SSNL-RGDWKRRFFVLDSRGMLYY 131
+ K + ++QG+L SS L R +WK+R+FVL ++Y+
Sbjct: 53 RSKQEALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYF 94
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
D+ G + + A ++ ++ LL GA N ++ PLH+ K+LL G
Sbjct: 28 DVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENE--FPLHQAATLEDTKIVKILLFSG 85
Query: 603 ADPRAVNREGKTSLELAVES 622
D + +G T+L AV+S
Sbjct: 86 LDDSQFDDKGNTALYYAVDS 105
>pdb|1V5P|A Chain A, Solution Structure Of The N-Terminal Pleckstrin Homology
Domain Of Tapp2 From Mouse
Length = 126
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 201 FCFRIISPTKNYTLQAESALDQMDWIEKI 229
FCF I + ++ Y LQA D DW+E +
Sbjct: 87 FCFVINALSQRYFLQANDQKDLKDWVEAL 115
>pdb|3AJ4|A Chain A, Crystal Structure Of The Ph Domain Of Evectin-2 From Human
Complexed With O-Phospho-L-Serine
pdb|3AJ4|B Chain B, Crystal Structure Of The Ph Domain Of Evectin-2 From Human
Complexed With O-Phospho-L-Serine
pdb|3VIA|A Chain A, Crystal Structure Of The Ph Domain Of Evectin-2 From Human
pdb|3VIA|B Chain B, Crystal Structure Of The Ph Domain Of Evectin-2 From Human
Length = 112
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 95 GKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQ 135
G + ++ G+L ++S+ L+ WK+ +F L S G L YY Q
Sbjct: 1 GSMAFVKSGWLLRQSTILK-RWKKNWFDLWSDGHLIYYDDQ 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,940,947
Number of Sequences: 62578
Number of extensions: 509082
Number of successful extensions: 1692
Number of sequences better than 100.0: 136
Number of HSP's better than 100.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1241
Number of HSP's gapped (non-prelim): 374
length of query: 638
length of database: 14,973,337
effective HSP length: 105
effective length of query: 533
effective length of database: 8,402,647
effective search space: 4478610851
effective search space used: 4478610851
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)