Query 006616
Match_columns 638
No_of_seqs 768 out of 5129
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 12:00:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006616.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006616hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0521 Putative GTPase activa 100.0 5.4E-67 1.2E-71 589.6 21.5 510 1-631 199-741 (785)
2 KOG0705 GTPase-activating prot 100.0 3.9E-61 8.4E-66 497.6 19.5 383 87-606 290-721 (749)
3 KOG0703 Predicted GTPase-activ 100.0 5.5E-37 1.2E-41 301.4 8.2 116 305-447 12-127 (287)
4 KOG0818 GTPase-activating prot 100.0 7.9E-37 1.7E-41 312.1 9.4 212 315-600 5-221 (669)
5 PF01412 ArfGap: Putative GTPa 100.0 2.2E-35 4.8E-40 261.2 7.2 115 307-446 2-116 (116)
6 smart00105 ArfGap Putative GTP 100.0 5.1E-34 1.1E-38 250.7 10.4 109 316-448 1-109 (112)
7 KOG1117 Rho- and Arf-GTPase ac 100.0 5.2E-32 1.1E-36 291.5 9.5 262 92-490 185-446 (1186)
8 COG5347 GTPase-activating prot 100.0 9.5E-32 2E-36 273.4 10.0 119 306-447 8-126 (319)
9 PLN03119 putative ADP-ribosyla 100.0 1.6E-29 3.5E-34 264.4 10.6 121 303-450 8-128 (648)
10 PLN03131 hypothetical protein; 100.0 4.4E-29 9.6E-34 263.2 9.8 119 304-449 9-127 (705)
11 PLN03114 ADP-ribosylation fact 99.9 6.4E-26 1.4E-30 226.2 10.9 119 307-447 11-129 (395)
12 KOG0704 ADP-ribosylation facto 99.9 6.7E-26 1.4E-30 224.2 6.0 82 307-390 8-89 (386)
13 KOG0706 Predicted GTPase-activ 99.9 1.1E-25 2.4E-30 230.4 6.8 84 306-391 11-94 (454)
14 KOG4412 26S proteasome regulat 99.9 1.8E-23 3.9E-28 190.0 11.7 157 457-638 39-196 (226)
15 KOG4412 26S proteasome regulat 99.8 1.7E-21 3.7E-26 177.1 8.7 124 512-638 39-163 (226)
16 KOG1451 Oligophrenin-1 and rel 99.8 6.9E-21 1.5E-25 199.0 10.9 161 1-232 203-366 (812)
17 KOG0509 Ankyrin repeat and DHH 99.8 9.4E-21 2E-25 202.7 10.3 156 458-638 80-236 (600)
18 KOG0509 Ankyrin repeat and DHH 99.8 6.6E-21 1.4E-25 203.8 8.9 160 454-638 42-202 (600)
19 PHA02791 ankyrin-like protein; 99.8 6.9E-20 1.5E-24 187.9 14.0 177 457-638 31-218 (284)
20 PHA02875 ankyrin repeat protei 99.8 6.3E-20 1.4E-24 200.1 13.5 179 457-638 36-226 (413)
21 cd01233 Unc104 Unc-104 pleckst 99.8 3.1E-19 6.7E-24 154.3 12.1 94 99-233 2-98 (100)
22 PHA02875 ankyrin repeat protei 99.8 3.3E-19 7.2E-24 194.5 14.3 178 458-638 4-192 (413)
23 PHA02989 ankyrin repeat protei 99.8 3.4E-19 7.4E-24 198.8 13.6 178 458-637 71-312 (494)
24 PHA02878 ankyrin repeat protei 99.8 3.2E-19 6.9E-24 198.2 13.3 179 458-638 39-259 (477)
25 PHA02859 ankyrin repeat protei 99.8 2.3E-19 5E-24 176.9 10.5 154 458-638 23-183 (209)
26 cd01251 PH_centaurin_alpha Cen 99.8 5.5E-19 1.2E-23 153.4 11.2 93 101-234 1-101 (103)
27 PHA03095 ankyrin-like protein; 99.8 5.4E-19 1.2E-23 196.1 13.5 179 458-638 119-314 (471)
28 KOG0508 Ankyrin repeat protein 99.8 1.1E-19 2.4E-24 186.6 6.2 151 458-635 86-236 (615)
29 KOG0508 Ankyrin repeat protein 99.8 1.8E-19 4E-24 185.1 7.7 164 458-638 44-207 (615)
30 cd01264 PH_melted Melted pleck 99.8 9.3E-19 2E-23 149.0 10.6 92 101-232 2-100 (101)
31 PHA02795 ankyrin-like protein; 99.8 4.8E-19 1.1E-23 188.6 11.0 158 456-638 116-286 (437)
32 PHA02791 ankyrin-like protein; 99.8 1.9E-18 4.2E-23 177.2 14.0 165 468-638 10-184 (284)
33 PHA02874 ankyrin repeat protei 99.8 1.5E-18 3.2E-23 190.6 14.0 174 455-638 34-214 (434)
34 PHA03100 ankyrin repeat protei 99.8 1.4E-18 3.1E-23 193.2 13.1 155 458-638 37-200 (480)
35 PHA02716 CPXV016; CPX019; EVM0 99.8 8.3E-19 1.8E-23 198.8 11.2 151 467-638 152-343 (764)
36 PHA03100 ankyrin repeat protei 99.8 1.9E-18 4.1E-23 192.2 14.0 179 457-638 107-307 (480)
37 PHA02917 ankyrin-like protein; 99.8 2.2E-18 4.7E-23 196.2 14.6 181 457-638 33-254 (661)
38 PHA03095 ankyrin-like protein; 99.8 1.8E-18 4E-23 191.8 13.0 179 458-638 85-281 (471)
39 PHA02716 CPXV016; CPX019; EVM0 99.8 1.4E-18 2.9E-23 197.1 11.6 160 458-638 179-390 (764)
40 PHA02874 ankyrin repeat protei 99.8 3.9E-18 8.5E-23 187.2 15.0 177 457-638 69-279 (434)
41 cd01236 PH_outspread Outspread 99.8 2.9E-18 6.2E-23 147.5 10.7 92 101-230 1-101 (104)
42 PHA02878 ankyrin repeat protei 99.8 2.2E-18 4.7E-23 191.5 12.4 161 471-634 148-321 (477)
43 cd01238 PH_Tec Tec pleckstrin 99.8 2.6E-18 5.7E-23 149.9 10.1 95 100-232 1-106 (106)
44 PHA02946 ankyin-like protein; 99.8 2.3E-18 4.9E-23 188.7 11.7 178 457-638 73-267 (446)
45 PHA02743 Viral ankyrin protein 99.8 1.9E-18 4.2E-23 164.1 9.6 107 530-638 41-152 (166)
46 cd01265 PH_PARIS-1 PARIS-1 ple 99.8 5.2E-18 1.1E-22 145.1 11.1 90 102-232 2-93 (95)
47 PHA02859 ankyrin repeat protei 99.8 2.3E-18 5E-23 169.8 9.8 145 458-623 53-203 (209)
48 cd01247 PH_GPBP Goodpasture an 99.8 7.6E-18 1.6E-22 142.5 11.5 88 102-231 2-90 (91)
49 PHA02989 ankyrin repeat protei 99.8 3.5E-18 7.6E-23 190.6 12.0 168 470-638 16-209 (494)
50 PHA02876 ankyrin repeat protei 99.7 4.8E-18 1E-22 196.9 13.2 180 457-638 274-467 (682)
51 PHA02798 ankyrin-like protein; 99.7 3.8E-18 8.3E-23 190.1 11.6 179 458-638 73-315 (489)
52 PHA02946 ankyin-like protein; 99.7 6.7E-18 1.5E-22 185.0 12.1 168 467-635 49-231 (446)
53 PLN03192 Voltage-dependent pot 99.7 9.2E-18 2E-22 197.7 11.9 155 456-638 525-679 (823)
54 KOG4177 Ankyrin [Cell wall/mem 99.7 6.2E-18 1.3E-22 195.1 9.9 179 458-638 442-630 (1143)
55 PHA02798 ankyrin-like protein; 99.7 1.4E-17 2.9E-22 185.7 11.6 152 469-638 50-210 (489)
56 cd01260 PH_CNK Connector enhan 99.7 6.5E-17 1.4E-21 139.0 11.1 91 101-232 2-96 (96)
57 cd01250 PH_centaurin Centaurin 99.7 8.5E-17 1.8E-21 137.5 10.8 93 101-231 1-93 (94)
58 cd01257 PH_IRS Insulin recepto 99.7 8.6E-17 1.9E-21 137.9 10.7 94 99-231 2-100 (101)
59 KOG0502 Integral membrane anky 99.7 2.8E-17 6E-22 154.0 8.2 171 460-636 100-280 (296)
60 KOG0512 Fetal globin-inducing 99.7 2.1E-17 4.6E-22 149.4 6.7 116 519-635 70-185 (228)
61 cd01249 PH_oligophrenin Oligop 99.7 5.3E-17 1.1E-21 137.1 8.3 96 101-231 1-103 (104)
62 cd01235 PH_SETbf Set binding f 99.7 1.5E-16 3.3E-21 138.0 11.3 91 102-233 2-101 (101)
63 KOG0510 Ankyrin repeat protein 99.7 2.9E-16 6.4E-21 171.3 15.6 173 455-638 224-401 (929)
64 PHA02741 hypothetical protein; 99.7 8.9E-17 1.9E-21 153.2 10.4 102 534-637 48-155 (169)
65 KOG0514 Ankyrin repeat protein 99.7 1.2E-16 2.5E-21 160.0 11.0 167 441-633 257-426 (452)
66 PHA02876 ankyrin repeat protei 99.7 7.9E-17 1.7E-21 186.8 11.3 176 457-638 308-498 (682)
67 PHA02917 ankyrin-like protein; 99.7 1.1E-16 2.3E-21 182.4 12.1 152 459-638 334-510 (661)
68 cd01252 PH_cytohesin Cytohesin 99.7 4.4E-16 9.5E-21 140.5 12.3 92 101-234 2-114 (125)
69 PHA02884 ankyrin repeat protei 99.7 2E-16 4.4E-21 162.4 11.1 109 516-624 36-149 (300)
70 PHA02795 ankyrin-like protein; 99.7 1.5E-16 3.3E-21 169.6 10.1 153 467-638 87-245 (437)
71 PHA02730 ankyrin-like protein; 99.7 1.9E-16 4E-21 176.6 10.7 158 459-638 346-522 (672)
72 cd01245 PH_RasGAP_CG5898 RAS G 99.7 2.3E-16 5E-21 133.9 8.7 91 101-231 1-97 (98)
73 PHA02730 ankyrin-like protein; 99.7 3.8E-16 8.3E-21 174.1 12.5 112 524-638 357-486 (672)
74 PHA02736 Viral ankyrin protein 99.7 1.3E-16 2.9E-21 149.6 6.9 97 540-638 49-150 (154)
75 KOG0505 Myosin phosphatase, re 99.7 9.7E-17 2.1E-21 168.6 6.1 155 458-638 42-255 (527)
76 cd01266 PH_Gab Gab (Grb2-assoc 99.6 8.2E-16 1.8E-20 135.0 11.0 92 102-232 2-107 (108)
77 KOG0195 Integrin-linked kinase 99.6 4.2E-16 9.2E-21 151.3 8.7 116 521-638 9-124 (448)
78 cd01246 PH_oxysterol_bp Oxyste 99.6 2.6E-15 5.6E-20 127.5 11.0 90 101-232 1-91 (91)
79 cd01241 PH_Akt Akt pleckstrin 99.6 2.9E-15 6.4E-20 129.8 11.4 95 99-233 1-102 (102)
80 PF12796 Ank_2: Ankyrin repeat 99.6 2.7E-15 5.9E-20 126.8 10.8 83 550-638 1-83 (89)
81 PHA02743 Viral ankyrin protein 99.6 7.4E-16 1.6E-20 146.3 8.1 135 458-613 22-162 (166)
82 KOG0502 Integral membrane anky 99.6 1.7E-16 3.6E-21 148.8 3.3 131 462-617 166-296 (296)
83 KOG4214 Myotrophin and similar 99.6 2E-15 4.3E-20 122.7 7.8 103 459-619 5-107 (117)
84 KOG0510 Ankyrin repeat protein 99.6 2E-15 4.4E-20 164.9 9.7 179 457-638 155-365 (929)
85 cd01244 PH_RasGAP_CG9209 RAS_G 99.6 5.6E-15 1.2E-19 126.0 10.1 88 103-231 5-97 (98)
86 cd01219 PH_FGD FGD (faciogenit 99.6 1.5E-14 3.3E-19 125.1 11.8 99 99-234 2-100 (101)
87 PHA02741 hypothetical protein; 99.6 9.8E-15 2.1E-19 139.1 11.2 98 539-638 14-123 (169)
88 KOG4177 Ankyrin [Cell wall/mem 99.6 5.7E-15 1.2E-19 170.9 11.1 178 458-638 409-597 (1143)
89 PF00169 PH: PH domain; Inter 99.6 3.3E-14 7.1E-19 122.9 13.2 97 99-233 1-103 (104)
90 KOG0195 Integrin-linked kinase 99.6 1.9E-15 4.1E-20 146.8 5.3 139 460-621 4-142 (448)
91 KOG0514 Ankyrin repeat protein 99.6 3.2E-15 7E-20 149.8 6.3 127 505-636 262-395 (452)
92 KOG0930 Guanine nucleotide exc 99.5 3.2E-14 7E-19 137.4 9.8 95 98-234 259-376 (395)
93 TIGR00870 trp transient-recept 99.5 1.4E-14 3E-19 169.6 8.8 166 457-623 18-219 (743)
94 PHA02792 ankyrin-like protein; 99.5 2.2E-14 4.7E-19 158.6 9.6 118 521-638 347-477 (631)
95 KOG0512 Fetal globin-inducing 99.5 1E-14 2.2E-19 132.1 5.5 145 457-624 64-210 (228)
96 PHA02884 ankyrin repeat protei 99.5 8.5E-14 1.8E-18 143.1 12.3 95 542-638 28-128 (300)
97 PF15409 PH_8: Pleckstrin homo 99.5 1.1E-13 2.3E-18 114.5 10.3 87 103-232 1-88 (89)
98 cd01220 PH_CDEP Chondrocyte-de 99.5 1.8E-13 4E-18 117.2 12.2 97 99-234 2-98 (99)
99 PF12796 Ank_2: Ankyrin repeat 99.5 2.7E-14 5.9E-19 120.7 6.8 83 523-609 7-89 (89)
100 PF15413 PH_11: Pleckstrin hom 99.5 1.6E-13 3.4E-18 121.0 11.4 112 101-232 1-112 (112)
101 PLN03192 Voltage-dependent pot 99.5 7.1E-14 1.5E-18 164.8 11.1 118 517-638 529-646 (823)
102 KOG0507 CASK-interacting adapt 99.5 2.5E-14 5.4E-19 155.3 5.3 166 458-636 5-170 (854)
103 PHA02792 ankyrin-like protein; 99.5 1.2E-13 2.6E-18 152.7 9.3 117 519-635 78-238 (631)
104 PHA02736 Viral ankyrin protein 99.4 2.5E-13 5.4E-18 127.3 7.5 97 511-607 55-154 (154)
105 KOG0505 Myosin phosphatase, re 99.4 2E-13 4.4E-18 143.9 7.3 199 423-622 38-274 (527)
106 cd01263 PH_anillin Anillin Ple 99.4 8.1E-13 1.7E-17 116.9 9.6 94 101-231 3-121 (122)
107 TIGR00870 trp transient-recept 99.4 4.8E-13 1E-17 156.7 10.6 173 458-636 54-279 (743)
108 PF13857 Ank_5: Ankyrin repeat 99.4 4E-13 8.6E-18 103.1 4.9 55 565-619 1-56 (56)
109 cd01254 PH_PLD Phospholipase D 99.4 9.9E-13 2.1E-17 117.5 8.1 36 197-232 86-121 (121)
110 COG0666 Arp FOG: Ankyrin repea 99.4 1.4E-12 3.1E-17 128.4 9.3 116 520-637 80-203 (235)
111 KOG4214 Myotrophin and similar 99.4 1.5E-12 3.2E-17 106.1 7.5 88 548-638 4-91 (117)
112 cd01253 PH_beta_spectrin Beta- 99.4 3.2E-12 6.9E-17 111.5 10.1 94 102-231 2-103 (104)
113 cd01230 PH_EFA6 EFA6 Pleckstri 99.4 6.5E-12 1.4E-16 110.6 11.9 102 101-235 2-113 (117)
114 cd00204 ANK ankyrin repeats; 99.3 6.1E-12 1.3E-16 111.7 10.5 117 516-634 10-126 (126)
115 cd00204 ANK ankyrin repeats; 99.3 1.1E-11 2.4E-16 110.1 12.2 94 542-637 3-96 (126)
116 PF13637 Ank_4: Ankyrin repeat 99.3 2.5E-12 5.4E-17 97.9 6.7 54 546-599 1-54 (54)
117 PF13857 Ank_5: Ankyrin repeat 99.3 1.3E-12 2.7E-17 100.3 4.8 54 533-586 2-56 (56)
118 cd01237 Unc112 Unc-112 pleckst 99.3 9.4E-12 2E-16 105.7 9.7 82 113-232 17-102 (106)
119 KOG1710 MYND Zn-finger and ank 99.3 4.1E-12 8.9E-17 123.9 8.6 93 539-633 38-131 (396)
120 KOG3676 Ca2+-permeable cation 99.3 5.4E-12 1.2E-16 139.2 9.8 143 458-636 186-330 (782)
121 smart00233 PH Pleckstrin homol 99.3 3.9E-11 8.5E-16 102.2 12.9 97 100-233 2-101 (102)
122 PTZ00322 6-phosphofructo-2-kin 99.3 1.1E-11 2.5E-16 142.3 11.4 86 549-636 85-170 (664)
123 KOG0515 p53-interacting protei 99.3 3.4E-12 7.5E-17 133.2 5.8 110 523-634 560-672 (752)
124 KOG0515 p53-interacting protei 99.3 1.1E-11 2.4E-16 129.5 8.5 86 551-638 555-640 (752)
125 KOG0507 CASK-interacting adapt 99.3 7.4E-12 1.6E-16 136.4 7.3 154 458-637 51-212 (854)
126 PF13637 Ank_4: Ankyrin repeat 99.2 2.3E-11 4.9E-16 92.6 6.7 54 579-634 1-54 (54)
127 cd01218 PH_phafin2 Phafin2 Pl 99.2 2.5E-10 5.4E-15 98.3 12.0 100 99-238 4-103 (104)
128 PTZ00322 6-phosphofructo-2-kin 99.2 2.8E-11 6.1E-16 139.0 8.0 100 522-621 91-197 (664)
129 KOG3676 Ca2+-permeable cation 99.2 6.1E-11 1.3E-15 131.1 8.4 93 544-638 182-297 (782)
130 COG0666 Arp FOG: Ankyrin repea 99.1 3.1E-10 6.7E-15 111.6 11.5 96 541-638 68-171 (235)
131 cd00821 PH Pleckstrin homology 99.1 3.1E-10 6.7E-15 95.6 9.5 94 101-231 1-95 (96)
132 PF15410 PH_9: Pleckstrin homo 99.1 5.2E-10 1.1E-14 99.8 9.2 106 101-232 2-117 (119)
133 KOG4369 RTK signaling protein 99.1 1.5E-10 3.2E-15 129.7 6.4 176 459-636 826-1016(2131)
134 KOG4369 RTK signaling protein 99.1 1.8E-10 3.9E-15 129.0 6.8 174 461-636 761-948 (2131)
135 KOG0690 Serine/threonine prote 99.0 4.6E-10 9.9E-15 112.2 8.0 105 96-237 12-120 (516)
136 KOG0702 Predicted GTPase-activ 99.0 3.2E-10 7E-15 118.5 6.5 119 306-449 13-132 (524)
137 KOG0783 Uncharacterized conser 99.0 2.7E-10 5.8E-15 124.7 3.6 84 539-622 45-129 (1267)
138 cd00900 PH-like Pleckstrin hom 99.0 4.7E-09 1E-13 88.9 10.6 91 102-231 2-98 (99)
139 cd01256 PH_dynamin Dynamin ple 98.9 7E-09 1.5E-13 85.4 9.5 90 99-230 1-102 (110)
140 KOG0818 GTPase-activating prot 98.9 5.1E-09 1.1E-13 109.1 9.8 93 541-635 122-221 (669)
141 KOG1710 MYND Zn-finger and ank 98.9 4.9E-09 1.1E-13 102.7 8.6 91 546-638 12-103 (396)
142 KOG4424 Predicted Rho/Rac guan 98.8 2.7E-08 5.9E-13 106.2 12.4 113 94-243 267-379 (623)
143 cd01234 PH_CADPS CADPS (Ca2+-d 98.8 8.3E-09 1.8E-13 85.7 6.6 97 101-233 4-110 (117)
144 KOG0506 Glutaminase (contains 98.8 5.7E-09 1.2E-13 108.4 5.1 92 543-636 503-595 (622)
145 cd01261 PH_SOS Son of Sevenles 98.7 1.2E-07 2.6E-12 82.7 11.0 106 98-234 3-110 (112)
146 KOG1090 Predicted dual-specifi 98.7 6.7E-09 1.4E-13 115.5 3.4 100 95-233 1630-1731(1732)
147 cd01259 PH_Apbb1ip Apbb1ip (Am 98.7 5.1E-08 1.1E-12 83.0 6.3 100 101-233 2-108 (114)
148 PF13606 Ank_3: Ankyrin repeat 98.6 6.8E-08 1.5E-12 63.6 4.0 28 546-573 2-29 (30)
149 PF14593 PH_3: PH domain; PDB: 98.5 6E-07 1.3E-11 77.2 9.7 92 96-236 10-102 (104)
150 PF13606 Ank_3: Ankyrin repeat 98.5 1.3E-07 2.8E-12 62.3 4.1 30 578-607 1-30 (30)
151 PF00023 Ank: Ankyrin repeat H 98.5 1.5E-07 3.2E-12 63.6 4.3 31 546-576 2-32 (33)
152 cd01242 PH_ROK Rok (Rho- assoc 98.5 1.1E-06 2.3E-11 75.0 9.9 40 194-233 69-110 (112)
153 KOG0522 Ankyrin repeat protein 98.5 3E-07 6.4E-12 97.6 7.9 85 548-634 22-108 (560)
154 PF00023 Ank: Ankyrin repeat H 98.5 2.1E-07 4.6E-12 62.8 4.4 33 578-610 1-33 (33)
155 cd01243 PH_MRCK MRCK (myotonic 98.5 2.2E-06 4.7E-11 74.2 11.3 39 194-232 73-118 (122)
156 KOG0705 GTPase-activating prot 98.4 5.4E-07 1.2E-11 95.9 8.0 87 549-637 627-717 (749)
157 KOG0506 Glutaminase (contains 98.4 1.9E-07 4.1E-12 97.3 3.5 89 458-603 508-597 (622)
158 KOG0782 Predicted diacylglycer 98.4 5.8E-07 1.3E-11 95.2 6.8 100 534-635 887-988 (1004)
159 cd01239 PH_PKD Protein kinase 98.3 1.7E-06 3.7E-11 74.2 7.6 97 100-232 1-117 (117)
160 KOG0522 Ankyrin repeat protein 98.2 2.4E-06 5.1E-11 90.9 6.4 71 531-601 40-110 (560)
161 KOG0932 Guanine nucleotide exc 98.1 2.7E-06 5.8E-11 90.5 4.1 109 93-234 500-618 (774)
162 KOG2384 Major histocompatibili 98.1 6.6E-06 1.4E-10 76.6 6.2 74 536-609 2-76 (223)
163 PTZ00267 NIMA-related protein 98.1 2.6E-05 5.7E-10 86.9 12.2 100 98-233 376-476 (478)
164 KOG3751 Growth factor receptor 98.0 8.6E-06 1.9E-10 86.3 6.9 36 95-131 313-348 (622)
165 KOG2384 Major histocompatibili 98.0 1.2E-05 2.6E-10 74.9 6.7 66 569-636 2-68 (223)
166 KOG0511 Ankyrin repeat protein 98.0 1.4E-05 3E-10 81.6 7.6 75 547-622 37-111 (516)
167 cd01222 PH_clg Clg (common-sit 98.0 8.2E-05 1.8E-09 63.4 10.9 34 200-233 59-95 (97)
168 KOG3640 Actin binding protein 98.0 1.3E-05 2.8E-10 90.2 7.4 101 98-235 989-1108(1116)
169 KOG3609 Receptor-activated Ca2 98.0 1.1E-05 2.4E-10 90.6 6.3 92 538-638 54-155 (822)
170 cd01226 PH_exo84 Exocyst compl 97.9 0.00011 2.3E-09 62.4 10.5 51 183-233 48-98 (100)
171 KOG2059 Ras GTPase-activating 97.9 2.8E-05 6E-10 85.3 7.0 96 99-233 565-664 (800)
172 cd01262 PH_PDK1 3-Phosphoinosi 97.8 8.3E-05 1.8E-09 61.3 7.3 84 100-232 2-87 (89)
173 KOG0511 Ankyrin repeat protein 97.7 5.1E-05 1.1E-09 77.5 6.0 57 580-638 37-93 (516)
174 cd01258 PH_syntrophin Syntroph 97.7 0.00016 3.4E-09 62.5 8.2 34 198-231 72-107 (108)
175 cd01224 PH_Collybistin Collybi 97.7 0.0007 1.5E-08 58.4 11.4 94 100-231 3-105 (109)
176 KOG0783 Uncharacterized conser 97.6 3.7E-05 8.1E-10 85.4 4.1 75 459-589 55-129 (1267)
177 KOG0782 Predicted diacylglycer 97.6 8.4E-05 1.8E-09 79.2 6.3 87 550-638 870-958 (1004)
178 cd01240 PH_beta-ARK Beta adren 97.6 4.8E-05 1E-09 64.3 3.6 99 99-237 3-102 (116)
179 PTZ00283 serine/threonine prot 97.5 0.00086 1.9E-08 75.1 13.5 37 198-234 453-490 (496)
180 KOG3723 PH domain protein Melt 97.5 4.8E-05 1E-09 81.3 3.0 107 94-239 730-842 (851)
181 PLN02866 phospholipase D 97.5 0.00047 1E-08 80.3 9.8 36 198-233 272-307 (1068)
182 cd01221 PH_ephexin Ephexin Ple 97.3 0.0022 4.7E-08 57.0 10.2 33 198-230 81-119 (125)
183 KOG1739 Serine/threonine prote 97.3 0.00022 4.7E-09 75.1 4.5 92 100-233 25-116 (611)
184 KOG0248 Cytoplasmic protein Ma 97.3 0.00013 2.7E-09 79.7 2.8 97 97-235 247-343 (936)
185 PF12814 Mcp5_PH: Meiotic cell 97.3 0.0037 8E-08 56.0 11.7 36 199-234 87-122 (123)
186 KOG0520 Uncharacterized conser 97.2 0.00013 2.8E-09 83.9 1.0 98 536-635 598-701 (975)
187 KOG0520 Uncharacterized conser 97.1 0.00027 5.8E-09 81.4 3.3 94 542-638 570-665 (975)
188 KOG0521 Putative GTPase activa 97.1 0.00042 9.1E-09 80.2 4.1 87 513-599 656-742 (785)
189 PLN00188 enhanced disease resi 97.0 0.0036 7.8E-08 70.4 10.3 39 201-239 74-115 (719)
190 cd01232 PH_TRIO Trio pleckstri 96.9 0.019 4.2E-07 50.4 11.8 35 200-234 74-113 (114)
191 KOG2505 Ankyrin repeat protein 96.5 0.0028 6.1E-08 67.4 4.5 62 559-620 404-471 (591)
192 cd01223 PH_Vav Vav pleckstrin 96.5 0.019 4.2E-07 50.1 8.8 37 199-235 75-113 (116)
193 smart00248 ANK ankyrin repeats 96.3 0.0064 1.4E-07 37.8 4.0 27 546-572 2-28 (30)
194 cd01225 PH_Cool_Pix Cool (clon 96.2 0.03 6.6E-07 48.2 8.2 53 181-233 56-109 (111)
195 smart00248 ANK ankyrin repeats 96.1 0.0093 2E-07 37.0 4.0 29 578-606 1-29 (30)
196 cd01228 PH_BCR-related BCR (br 96.0 0.04 8.7E-07 46.0 7.9 29 203-231 63-92 (96)
197 KOG3609 Receptor-activated Ca2 95.9 0.015 3.2E-07 66.2 6.8 121 458-608 27-160 (822)
198 KOG2505 Ankyrin repeat protein 95.7 0.013 2.7E-07 62.6 4.9 45 543-587 427-471 (591)
199 PF15404 PH_4: Pleckstrin homo 95.6 0.078 1.7E-06 50.6 9.4 24 208-231 160-183 (185)
200 KOG3531 Rho guanine nucleotide 95.6 0.0038 8.1E-08 70.1 0.4 92 100-232 925-1018(1036)
201 cd01227 PH_Dbs Dbs (DBL's big 95.4 0.26 5.6E-06 44.6 11.6 36 200-235 80-117 (133)
202 KOG1117 Rho- and Arf-GTPase ac 95.3 0.014 3E-07 65.9 3.8 93 98-235 86-179 (1186)
203 PF15406 PH_6: Pleckstrin homo 95.2 0.053 1.1E-06 46.4 5.9 28 203-230 83-110 (112)
204 KOG3543 Ca2+-dependent activat 94.9 0.0065 1.4E-07 66.0 -0.2 94 101-234 466-566 (1218)
205 KOG1737 Oxysterol-binding prot 94.1 0.034 7.3E-07 63.9 3.0 95 100-238 78-173 (799)
206 PF15408 PH_7: Pleckstrin homo 94.1 0.03 6.5E-07 45.3 1.9 31 201-231 64-95 (104)
207 cd01248 PH_PLC Phospholipase C 92.6 0.47 1E-05 41.8 7.3 33 199-231 78-114 (115)
208 cd01231 PH_Lnk LNK-family Plec 91.2 0.33 7.1E-06 41.0 4.2 35 197-231 71-106 (107)
209 PF06128 Shigella_OspC: Shigel 90.8 0.74 1.6E-05 44.8 6.8 90 546-638 179-278 (284)
210 PF08458 PH_2: Plant pleckstri 89.4 4 8.8E-05 35.4 9.5 38 197-234 67-104 (110)
211 KOG0248 Cytoplasmic protein Ma 89.3 0.1 2.2E-06 57.9 -0.3 102 91-237 251-352 (936)
212 KOG3531 Rho guanine nucleotide 88.3 0.47 1E-05 54.0 4.0 107 97-243 748-854 (1036)
213 cd05135 RasGAP_RASAL Ras GTPas 88.1 0.55 1.2E-05 49.5 4.2 26 98-123 302-332 (333)
214 cd05394 RasGAP_RASA2 RASA2 (or 86.6 0.45 9.8E-06 49.3 2.5 28 97-124 281-312 (313)
215 cd05128 RasGAP_GAP1_like The G 84.7 0.48 1E-05 49.5 1.7 29 96-124 283-315 (315)
216 KOG2070 Guanine nucleotide exc 83.9 16 0.00035 39.7 12.4 80 115-231 324-404 (661)
217 cd05134 RasGAP_RASA3 RASA3 (or 83.0 0.86 1.9E-05 47.4 2.6 27 98-124 279-309 (310)
218 PF06128 Shigella_OspC: Shigel 82.3 2.3 4.9E-05 41.6 5.0 48 557-604 228-279 (284)
219 KOG1729 FYVE finger containing 80.7 0.43 9.2E-06 48.9 -0.6 41 199-239 106-146 (288)
220 PF15405 PH_5: Pleckstrin homo 78.6 3.1 6.8E-05 37.8 4.4 33 200-232 99-134 (135)
221 PF00643 zf-B_box: B-box zinc 77.5 2 4.3E-05 30.2 2.3 33 318-350 3-36 (42)
222 KOG3549 Syntrophins (type gamm 77.4 7.6 0.00016 40.2 7.1 38 198-235 350-388 (505)
223 KOG4407 Predicted Rho GTPase-a 76.8 0.24 5.2E-06 58.7 -4.1 109 99-233 923-1041(1973)
224 KOG0517 Beta-spectrin [Cytoske 76.7 0.18 3.8E-06 61.7 -5.3 108 100-239 2300-2415(2473)
225 KOG4807 F-actin binding protei 75.6 0.038 8.3E-07 57.1 -9.7 50 182-232 64-113 (593)
226 PF11929 DUF3447: Domain of un 70.5 7.8 0.00017 31.3 4.4 48 547-601 7-54 (76)
227 KOG3523 Putative guanine nucle 69.1 33 0.00072 38.5 9.9 33 198-230 553-591 (695)
228 KOG0592 3-phosphoinositide-dep 68.8 7.7 0.00017 42.9 5.1 88 97-232 449-536 (604)
229 cd01255 PH_TIAM TIAM Pleckstri 67.5 18 0.00039 32.8 6.2 41 197-237 110-158 (160)
230 KOG3551 Syntrophins (type beta 65.2 10 0.00022 40.0 4.9 39 200-238 236-276 (506)
231 PF03158 DUF249: Multigene fam 65.0 12 0.00026 35.6 4.9 45 550-600 147-191 (192)
232 PRK12495 hypothetical protein; 61.8 4.2 9.1E-05 39.5 1.4 29 315-347 39-67 (226)
233 KOG3551 Syntrophins (type beta 61.7 10 0.00022 40.0 4.1 39 201-239 365-407 (506)
234 KOG4236 Serine/threonine prote 61.5 7.2 0.00016 43.0 3.2 34 199-233 478-523 (888)
235 PRK11019 hypothetical protein; 60.0 2.2 4.8E-05 35.5 -0.7 39 317-356 35-75 (88)
236 PF11929 DUF3447: Domain of un 59.7 13 0.00029 29.9 3.8 47 581-636 8-54 (76)
237 cd05395 RasGAP_RASA4 Ras GTPas 57.9 5.5 0.00012 42.1 1.6 25 100-124 302-331 (337)
238 KOG1170 Diacylglycerol kinase 56.9 0.58 1.3E-05 53.1 -6.0 33 200-232 61-93 (1099)
239 PF01286 XPA_N: XPA protein N- 54.9 5 0.00011 27.1 0.4 27 319-345 4-31 (34)
240 PF11781 RRN7: RNA polymerase 54.0 8.9 0.00019 26.2 1.6 25 318-345 8-32 (36)
241 TIGR02419 C4_traR_proteo phage 51.8 4.7 0.0001 31.4 -0.1 35 314-348 27-62 (63)
242 PRK13715 conjugal transfer pro 50.6 4.1 8.9E-05 32.8 -0.6 36 317-352 33-69 (73)
243 KOG2996 Rho guanine nucleotide 49.4 1.3E+02 0.0029 33.7 10.2 36 199-234 475-512 (865)
244 KOG4424 Predicted Rho/Rac guan 47.6 23 0.0005 39.4 4.3 52 181-233 541-595 (623)
245 smart00401 ZnF_GATA zinc finge 46.7 16 0.00034 27.3 2.1 36 318-353 3-40 (52)
246 KOG1738 Membrane-associated gu 45.2 3.5 7.7E-05 46.0 -2.3 36 100-135 563-600 (638)
247 PF08271 TF_Zn_Ribbon: TFIIB z 44.8 15 0.00032 26.0 1.6 24 320-344 2-25 (43)
248 KOG1264 Phospholipase C [Lipid 44.5 24 0.00052 40.8 3.9 37 96-134 472-508 (1267)
249 PF01258 zf-dskA_traR: Prokary 41.5 4.3 9.4E-05 27.6 -1.5 30 319-348 4-34 (36)
250 PF14803 Nudix_N_2: Nudix N-te 40.7 11 0.00023 25.5 0.3 30 319-348 1-32 (34)
251 PF00320 GATA: GATA zinc finge 40.6 18 0.00038 24.7 1.4 30 321-350 1-32 (36)
252 KOG1264 Phospholipase C [Lipid 38.7 51 0.0011 38.3 5.3 56 181-236 854-913 (1267)
253 COG1381 RecO Recombinational D 37.3 15 0.00032 37.2 0.9 30 316-345 152-182 (251)
254 PHA00080 DksA-like zinc finger 37.0 12 0.00026 30.0 0.1 33 316-349 29-63 (72)
255 PF03586 Herpes_UL36: Herpesvi 36.6 74 0.0016 31.8 5.5 47 4-50 159-205 (253)
256 TIGR00613 reco DNA repair prot 36.3 21 0.00046 35.6 1.9 33 315-347 144-177 (241)
257 KOG3362 Predicted BBOX Zn-fing 35.3 16 0.00034 33.1 0.6 33 316-349 116-149 (156)
258 KOG4305 RhoGEF GTPase [Signal 34.5 1.9E+02 0.0041 35.2 9.3 37 203-239 656-692 (1029)
259 PRK00085 recO DNA repair prote 32.4 21 0.00046 35.8 1.1 32 315-346 146-178 (247)
260 KOG4047 Docking protein 1 (p62 32.0 25 0.00055 38.2 1.6 28 98-125 7-35 (429)
261 PF03158 DUF249: Multigene fam 31.9 78 0.0017 30.3 4.6 46 582-635 146-191 (192)
262 COG1734 DksA DnaK suppressor p 30.1 13 0.00029 32.9 -0.7 33 317-349 79-112 (120)
263 KOG3727 Mitogen inducible gene 28.8 11 0.00023 41.7 -1.8 50 181-230 402-455 (664)
264 KOG0119 Splicing factor 1/bran 27.9 1.5E+02 0.0033 32.6 6.5 68 315-385 258-332 (554)
265 PF14712 Snapin_Pallidin: Snap 27.3 2.1E+02 0.0045 23.7 6.2 39 14-52 8-46 (92)
266 cd07160 NR_DBD_LXR DNA-binding 27.1 39 0.00084 29.1 1.6 31 317-350 17-47 (101)
267 cd07171 NR_DBD_ER DNA-binding 26.9 34 0.00073 28.2 1.2 30 318-350 3-32 (82)
268 smart00290 ZnF_UBP Ubiquitin C 26.6 39 0.00085 24.5 1.4 24 320-343 1-24 (50)
269 cd07170 NR_DBD_ERR DNA-binding 24.6 40 0.00087 28.7 1.3 29 319-350 5-33 (97)
270 cd07173 NR_DBD_AR DNA-binding 24.1 39 0.00084 27.8 1.0 30 318-350 3-32 (82)
271 KOG4217 Nuclear receptors of t 24.0 32 0.00068 37.3 0.6 33 314-349 265-297 (605)
272 KOG3518 Putative guanine nucle 23.7 60 0.0013 33.7 2.5 38 200-237 396-436 (521)
273 PF13119 DUF3973: Domain of un 23.2 39 0.00084 23.4 0.7 12 339-350 2-13 (41)
274 KOG1595 CCCH-type Zn-finger pr 23.2 19 0.00041 39.7 -1.2 91 545-637 57-155 (528)
275 KOG3520 Predicted guanine nucl 22.8 1.3E+02 0.0028 36.8 5.3 55 183-239 670-727 (1167)
276 cd06968 NR_DBD_ROR DNA-binding 22.6 48 0.001 28.1 1.4 30 318-350 5-34 (95)
277 COG2174 RPL34A Ribosomal prote 22.1 50 0.0011 27.5 1.3 35 311-345 27-78 (93)
278 TIGR02890 spore_yteA sporulati 22.0 32 0.00068 32.2 0.2 34 316-350 84-119 (159)
279 cd07163 NR_DBD_TLX DNA-binding 22.0 44 0.00096 28.1 1.0 30 318-350 6-35 (92)
280 PF06677 Auto_anti-p27: Sjogre 21.9 45 0.00097 23.6 0.9 25 318-345 17-41 (41)
281 PRK10778 dksA RNA polymerase-b 21.7 28 0.00062 32.2 -0.2 37 315-351 108-145 (151)
282 cd03031 GRX_GRX_like Glutaredo 21.6 53 0.0012 30.3 1.6 36 307-351 88-123 (147)
283 KOG3836 HLH transcription fact 21.1 23 0.00049 39.8 -1.1 41 528-568 411-451 (605)
284 cd07161 NR_DBD_EcR DNA-binding 20.9 54 0.0012 27.6 1.3 29 319-350 2-30 (91)
285 cd06966 NR_DBD_CAR DNA-binding 20.9 48 0.001 28.0 1.0 28 320-350 2-29 (94)
286 PF10764 Gin: Inhibitor of sig 20.2 54 0.0012 23.8 1.0 26 320-346 1-26 (46)
287 KOG3549 Syntrophins (type gamm 20.0 1.2E+02 0.0026 31.7 3.8 41 196-236 221-263 (505)
No 1
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-67 Score=589.55 Aligned_cols=510 Identities=42% Similarity=0.644 Sum_probs=365.0
Q ss_pred ChhhhhHHHhHHHHHhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCCCccccccc
Q 006616 1 MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWASNGSNGSPNGDGIQAIGRS 80 (638)
Q Consensus 1 ~~a~~~ff~~G~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (638)
||||++||++||+++.+|+||++++.+++++++++++.+++.|++++++++.+.+...+.... ...|.+.
T Consensus 199 ~~aq~~fF~~g~~l~~~m~p~~~~i~~~v~ql~~~~~~e~~am~~~~q~l~~~~~~~~~~~~~--~~~~~~~-------- 268 (785)
T KOG0521|consen 199 MHAQINFFKQGEDLLSQMDPYIKKVATYVQQLREESDAEQRAMEQRYQELRSASNLESRPKSD--SASPSGG-------- 268 (785)
T ss_pred HHhccchhcccHhHHhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHhhhhhhcccc--ccccccc--------
Confidence 799999999999999999999999999999999999999999999999999987766555211 1122221
Q ss_pred hhHHHHHHHhhhcCCCcceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCcc
Q 006616 81 SHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLL 160 (638)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~ 160 (638)
+......+.|||+|+.++..++|+||||.++ ++.+.|.......
T Consensus 269 -------------~~~~~~~~~~~l~~k~~~~~~tw~r~~f~~q-~~~l~~~~r~~~~---------------------- 312 (785)
T KOG0521|consen 269 -------------NLKLGYRMEGYLRKKASNASKTWKRRWFSIQ-DGQLGYQHRGADA---------------------- 312 (785)
T ss_pred -------------cccchhhhhhhhhhhcccchhhHHhhhhhhh-ccccccccccccc----------------------
Confidence 1223334689999999988999999999998 4444443332110
Q ss_pred ccccccccCCCCCCccccccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHHhccC
Q 006616 161 SRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQ 240 (638)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~~ 240 (638)
.. ....+|.+|+|++.++..++||||+|++|+|+|+|||+|+.|.++||.+|+++|.++++..
T Consensus 313 ---------------~~--~~~~dL~~csvk~~~~~~drr~CF~iiS~tks~~lQAes~~d~~~Wi~~i~nsi~s~l~~~ 375 (785)
T KOG0521|consen 313 ---------------EN--VLIEDLRTCSVKPDAEQRDRRFCFEIISPTKSYLLQAESEKDCQDWISALQNSILSALNSA 375 (785)
T ss_pred ---------------cc--cccccchhccccCCcccccceeeEEEecCCcceEEecCchhHHHHHHHHHHHHHHHHHhcc
Confidence 00 2236899999999888789999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCcchhhhhhccccccccccccccccccccccccCCchHHHHHHcccCCc
Q 006616 241 APERCLPTSP-MGSGHHRSASDSSSFESSDFDHAAVEEYTSERNLTSAYHERQSRGSQQQRSCVKSEKPIDVLRRVCGND 319 (638)
Q Consensus 241 ~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 319 (638)
.++...+... .+..+..+.+ .....+.. ...++ ..+...++..+++.|||.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~s---------~~~~~s~~---------~s~~~----------~~~~~~~~~~vq~~pgN~ 427 (785)
T KOG0521|consen 376 FLGQDSTGGRNTQSGHSSSAS---------YSTITSAN---------TSRER----------LNKGISVIEEVQSVPGNA 427 (785)
T ss_pred CcccccccCCCcccccccccc---------cccccccc---------ccccc----------cccCcchhhhhhcCCchh
Confidence 7765433211 1111111111 00000000 00000 011223578899999999
Q ss_pred ccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHHHHHHHhhhccccccc
Q 006616 320 RCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFH 399 (638)
Q Consensus 320 ~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~n~i~e~~~~~~~~~~ 399 (638)
.|||||++.|+|+|+|+||.+||+|||+||+||||+||||||||| .|+++.+.+++++||..+|.|||+.++.-.
T Consensus 428 ~c~Dcg~p~ptw~S~NLgv~~CIecSGvhRslGvh~SkvrsLtLD--~~~~~l~~l~~~lgn~~~N~i~e~~l~~~~--- 502 (785)
T KOG0521|consen 428 QCCDCGAPEPTWASINLGVLLCIECSGVHRSLGVHISKVRSLTLD--VWEPELLLLFKNLGNKYVNEIYEALLPSYD--- 502 (785)
T ss_pred hhhhcCCCCCchHhhhhchhhHhhccccccccCchhhhhhhhhhh--ccCcHHHHHHHHhCcchhhhhhhccccccc---
Confidence 999999999999999999999999999999999999999999999 599999999999999999999999998721
Q ss_pred cCCCCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhhhccCCCCcccc--c--------------ccccceecc
Q 006616 400 VDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYL--H--------------SVAHQIWEG 463 (638)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~fv~~~~~~~~~--~--------------~~~~~L~~A 463 (638)
..+|.+..++..|++||++||+++.|....+..... . ....+++.+
T Consensus 503 ------------------~~~~~~~~~~~~r~~~i~~kyve~~F~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (785)
T KOG0521|consen 503 ------------------SSKPTASSSRQAREAWIKAKYVERRFSVKEPQIKRLYLERLLEAIKSILESASASGVQISEG 564 (785)
T ss_pred ------------------ccCCCCccchhhhhHhhhcccceeeEeecccchhhhhhhhhhhhhhhhhhhhhhhhhhHhhc
Confidence 358888888999999999999999999876654311 1 112233444
Q ss_pred cccccchh-hhhhhcccccCccccccchhc----------cchhhH---HHHHhhhhccccCCCcccccccccCCccccc
Q 006616 464 VRTNDKKA-VYRHIVNFEVDVNAVYEQVSC----------ISSLTL---AKAMLLNEQTSLERSSSSLTGNSSDRSSSGS 529 (638)
Q Consensus 464 v~~~d~~~-v~~lLl~~gaDvN~~~~~~~~----------~~~~~l---~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~ 529 (638)
+..+.... |..++.....|.+........ ..+.+. .+..+... .+..............
T Consensus 565 ~~~~~~~~~v~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~h~e~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~ 637 (785)
T KOG0521|consen 565 VSGSSREETVYHLIVSTLNDASIRSADFSVPDKSSADGSTTLHYEILECLKLLLFIK-------ELLVKASSDGECLPRI 637 (785)
T ss_pred cccCCccccceeeeccCcccccccccccccccccccccccccchhhhhccccccchH-------HHHHHhccCccchhhh
Confidence 43333333 555554443344443332111 111111 00000000 0000000000000001
Q ss_pred ccccCCCCCCCc--CCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCC
Q 006616 530 LNLAGTSEGQTM--DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA 607 (638)
Q Consensus 530 ~lL~~~~~~~~~--~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~ 607 (638)
-.-...++++|. .-..|.|+||.|+..|...++++||++|+++|..|..|+||||.+...|+...+.+|+++||++++
T Consensus 638 ~~~~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a 717 (785)
T KOG0521|consen 638 ATALAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNA 717 (785)
T ss_pred hhhhcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccc
Confidence 111122333332 234589999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHcCCCcHHHHH
Q 006616 608 VNREGKTSLELAVESNFADSEVLA 631 (638)
Q Consensus 608 ~d~~g~TpL~~A~~~g~~d~eiv~ 631 (638)
.+.+|.+||++|....+.|...+.
T Consensus 718 ~~~~~~~~l~~a~~~~~~d~~~l~ 741 (785)
T KOG0521|consen 718 FDPDGKLPLDIAMEAANADIVLLL 741 (785)
T ss_pred cCccCcchhhHHhhhccccHHHHH
Confidence 999999999999888665544333
No 2
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-61 Score=497.58 Aligned_cols=383 Identities=32% Similarity=0.540 Sum_probs=286.0
Q ss_pred HHHhhhcCCCcceeEEEEEEeecCCCC-CCceeeEEEEecCceEEEEecCCC------------------CCCCCCCccc
Q 006616 87 AVMQSAAKGKVQTIRQGYLSKRSSNLR-GDWKRRFFVLDSRGMLYYYRKQCS------------------KSSGSGSQLS 147 (638)
Q Consensus 87 ~~~~~~~~~~~~~~k~GyL~Kr~~~~~-~~WkrRwfvL~~~~~l~y~~~~~~------------------~~~g~~~~~~ 147 (638)
.....++.|+..|||||.|+||+++.. +.|||.|.+|.++|+|.||..-.+ .|........
T Consensus 290 ~~adtigsGRAIPIKQg~LlKrSgk~L~keWKKKYVtlcsnG~LtYh~sL~dYM~niHgKEiDL~~tTikvpGK~pplat 369 (749)
T KOG0705|consen 290 NHADTIGSGRAIPIKQGMLLKRSGKSLNKEWKKKYVTLCSNGVLTYHPSLGDYMKNIHGKEIDLLRTTIKVPGKRPPLAT 369 (749)
T ss_pred hhhhhhcCCcccchhhhhHHHhcchHHHHHHhhhheeeccCcceeecccHHHHHHhcccceeeeeeeeeeccCccCcccc
Confidence 334456778899999999999998855 899999999999999999965110 0000000000
Q ss_pred cc--cCcCcccCCcccccc---------cccc--CCCCCC----------ccccc----cceeecccceeecCCCCCCCc
Q 006616 148 SQ--RNSSELGSGLLSRWL---------SSHY--HGGVHD----------EKSAA----RHTVNLLTSTIKVDADQSDLR 200 (638)
Q Consensus 148 ~~--~~~~~~~~g~~~~~~---------~~~~--~~~~~~----------~~~~~----~~~i~l~~~~v~~~~~~~~rr 200 (638)
.. ..+...-.|++--+- .+.. .|++.+ .+++. ++.....+.+.+ .+ +..
T Consensus 370 sa~ap~Ss~~~NGl~Kdm~~~rSd~Gl~ss~~~Spgsissaittspkl~pPpSp~~nkKkh~RKksTnskh--nd--EEd 445 (749)
T KOG0705|consen 370 SACAPSSSSKSNGLSKDMEPRRSDVGLGSSDCTSPGSISSAITTSPKLHPPPSPHANKKKHSRKKSTNSKH--ND--EED 445 (749)
T ss_pred ccccccccccccccccccccccCCCCCCcccCCCCCCcccccccCccCCCCCCccchhhhhhhhccCCCCC--Cc--ccc
Confidence 00 000111111110000 0000 001100 11111 111111121212 11 336
Q ss_pred ceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhhhhh
Q 006616 201 FCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMGSGHHRSASDSSSFESSDFDHAAVEEYT 279 (638)
Q Consensus 201 ~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 279 (638)
|||.|++.. .+|+|.|.+-+|+++||+||+..|-..|+.... +.. ..
T Consensus 446 e~F~IVs~tgqtWhFeAtt~EERdaWvQai~sqIlaSlq~ces--sk~-------Ks----------------------- 493 (749)
T KOG0705|consen 446 ECFEIVSNTGQTWHFEATTYEERDAWVQAIQSQILASLQSCES--SKS-------KS----------------------- 493 (749)
T ss_pred ceEEEeccccchhhhhhcchhhHHHHHHHHHHHHHHHHhhhhh--hcc-------hh-----------------------
Confidence 999999986 699999999999999999999999766654221 000 00
Q ss_pred ccccccccccccccccccccccccCCchHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeE
Q 006616 280 SERNLTSAYHERQSRGSQQQRSCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVR 359 (638)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvr 359 (638)
+. .++.....++.|+.++||..|+||+.++|.|||+|+|+++||+||||||+||+|+|+||
T Consensus 494 ---~~----------------~sqsea~a~qairn~rgn~~c~dc~~~n~~wAslnlg~l~cieCsgihr~lgt~lSrvr 554 (749)
T KOG0705|consen 494 ---RL----------------TSQSEAMALQAIRNMRGNSHCVDCGTPNPKWASLNLGVLMCIECSGIHRNLGTHLSRVR 554 (749)
T ss_pred ---cc----------------chhhhHHHHHHHhcCcCCceeeecCCCCcccccccCCeEEEEEchhhhhhhhhhhhhhh
Confidence 00 00113457889999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCccCHHHHHHHHHhchHHHHHHHHhhhccccccccCCCCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHh
Q 006616 360 SLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYA 439 (638)
Q Consensus 360 sl~ld~~~~~~~~~~~~~~~gN~~~n~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~ 439 (638)
||.|| .|..|.+.+|.++||+.||+|||..... ..||.+++.+++||+||++||+
T Consensus 555 ~LeLD--dWPvEl~~Vm~aiGN~~AN~vWE~~~~G-----------------------~~KPs~~s~REEkErwIr~KYe 609 (749)
T KOG0705|consen 555 SLELD--DWPVELLKVMSAIGNDLANSVWEGSSQG-----------------------QTKPSPDSSREEKERWIRAKYE 609 (749)
T ss_pred ccccc--cCcHHHHHHHHHhhhhHHHHHhhhhccC-----------------------CcCCCccccHHHHHHHHHHHHH
Confidence 99999 7999999999999999999999985543 4799999999999999999999
Q ss_pred hhhhccCCCCcccccccccceecccccccchhhhhhhcccccC--ccccccchhccchhhHHHHHhhhhccccCCCcccc
Q 006616 440 EKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVNFEVD--VNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSL 517 (638)
Q Consensus 440 ~k~fv~~~~~~~~~~~~~~~L~~Av~~~d~~~v~~lLl~~gaD--vN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l 517 (638)
++.|+.+.+... .++.++|+.|+...|+..++-|| .+|.. +|...
T Consensus 610 qklFLaPl~~te--~~lgqqLl~A~~~~Dl~t~~lLL-Ahg~~~e~~~t~------------------------------ 656 (749)
T KOG0705|consen 610 QKLFLAPLPCTE--EPLGQQLLRAVAAEDLQTAILLL-AHGSREEVNETC------------------------------ 656 (749)
T ss_pred HHhhcCCCCCCC--CchHHHHHHHHHHHHHHHHHHHH-hccCchhhhccc------------------------------
Confidence 999999999876 68999999999999998877555 66643 33322
Q ss_pred cccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHH
Q 006616 518 TGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKL 597 (638)
Q Consensus 518 ~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~l 597 (638)
.+.+|+||||+||..|++.+.++|+.+|+|+-++|..|+|+|.||-..|..+|+.+
T Consensus 657 ------------------------~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~ 712 (749)
T KOG0705|consen 657 ------------------------GEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDV 712 (749)
T ss_pred ------------------------cCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHH
Confidence 24579999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCC
Q 006616 598 LLTRGADPR 606 (638)
Q Consensus 598 Ll~~gad~~ 606 (638)
||.+|+..+
T Consensus 713 llq~gcp~e 721 (749)
T KOG0705|consen 713 LLQYGCPDE 721 (749)
T ss_pred HHHcCCCcc
Confidence 999998643
No 3
>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-37 Score=301.43 Aligned_cols=116 Identities=46% Similarity=0.837 Sum_probs=108.4
Q ss_pred CchHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHH
Q 006616 305 SEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFA 384 (638)
Q Consensus 305 ~~~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~ 384 (638)
++..+..|.+.|+|..|||||++.|+|||.|||||||+.|+||||+|||||||||||+|| .|++|+|+.|+.+||..|
T Consensus 12 ~~~~l~~Ll~~~~N~~CADC~a~~P~WaSwnlGvFiC~~C~giHR~lg~hiSkVkSv~LD--~W~~eqv~~m~~~GN~~a 89 (287)
T KOG0703|consen 12 NKRRLRELLREPDNKVCADCGAKGPRWASWNLGVFICLRCAGIHRSLGVHISKVKSVTLD--EWTDEQVDFMISMGNAKA 89 (287)
T ss_pred HHHHHHHHHcCcccCcccccCCCCCCeEEeecCeEEEeecccccccccchhheeeeeecc--ccCHHHHHHHHHHcchhh
Confidence 467888899999999999999999999999999999999999999999999999999999 799999999999999999
Q ss_pred HHHHHhhhccccccccCCCCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhhhccCC
Q 006616 385 NSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKP 447 (638)
Q Consensus 385 n~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~fv~~~ 447 (638)
|++||+.+|.. ..+|.+++ .+|.|||+||+.++|+.+.
T Consensus 90 n~~~ea~~p~~----------------------~~~p~~d~---~~e~FIR~KYE~kkf~~~~ 127 (287)
T KOG0703|consen 90 NSYYEAKLPDP----------------------FRRPGPDD---LVEQFIRDKYERKKFLDPE 127 (287)
T ss_pred hhhccccCCcc----------------------ccCCChHH---HHHHHHHHHHhhhhhccch
Confidence 99999998872 46777665 8999999999999999875
No 4
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=100.00 E-value=7.9e-37 Score=312.14 Aligned_cols=212 Identities=34% Similarity=0.581 Sum_probs=187.9
Q ss_pred ccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHHHHHHHhhhcc
Q 006616 315 VCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQS 394 (638)
Q Consensus 315 ~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~n~i~e~~~~~ 394 (638)
...-+.|+|||+++|.|||+|-|+++|.+|..+||+||.|||-||+|.-. .|+|+.|++...+.|..+|+|||..+-.
T Consensus 5 ~l~~evC~DC~~~dp~WASvnrGt~lC~eCcsvHrsLGrhIS~vrhLR~s--~W~pt~l~~V~tLn~~gaNsIWEh~Lld 82 (669)
T KOG0818|consen 5 LLSSEVCADCSGPDPSWASVNRGTFLCDECCSVHRSLGRHISQVRHLRHT--PWPPTLLQMVETLNNNGANSIWEHSLLD 82 (669)
T ss_pred chhhhhhcccCCCCCcceeecCceEehHhhhHHHhhhcchHHHHHHhccC--CCCHHHHHHHHHHHhcCcchhhhhhccC
Confidence 34568999999999999999999999999999999999999999999976 7999999999999999999999999987
Q ss_pred ccccccCCCCCCCCCCCCccccccCCCCCCCCHH-HHHHHHHHHHhhhhhccCCCCcc----cccccccceecccccccc
Q 006616 395 RSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSIS-VKEKFIHAKYAEKLFVRKPKDNQ----YLHSVAHQIWEGVRTNDK 469 (638)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~-~re~fI~~KY~~k~fv~~~~~~~----~~~~~~~~L~~Av~~~d~ 469 (638)
+...+.+ ..||.|.|... .++.||++||+...|+.+++... -..+++++|+..|+.+++
T Consensus 83 ~st~~sg----------------~rk~~pqD~~Hp~K~eFIkaKy~~LtFv~~~~~rDdD~~~~~~LsrQLhasvRt~nl 146 (669)
T KOG0818|consen 83 PATIMSG----------------RRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCRDDDSVTAKDLSKQLHSSVRTGNL 146 (669)
T ss_pred chhhhcc----------------cCCCCCcCCCCccHHHHHHHHHHheeeeccCCCCCcchhhHHHHHHHHHHHhhcccH
Confidence 6544322 57899988876 89999999999999998654332 224678999999999999
Q ss_pred hhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCCCCCcCCCCCCcH
Q 006616 470 KAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTL 549 (638)
Q Consensus 470 ~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~Tp 549 (638)
+...++| ..|||+|..+++. |.||
T Consensus 147 et~LRll-~lGA~~N~~hpek-------------------------------------------------------g~Tp 170 (669)
T KOG0818|consen 147 ETCLRLL-SLGAQANFFHPEK-------------------------------------------------------GNTP 170 (669)
T ss_pred HHHHHHH-HcccccCCCCccc-------------------------------------------------------CCch
Confidence 9999888 7899999877654 9999
Q ss_pred HHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHh
Q 006616 550 LHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 600 (638)
Q Consensus 550 Lh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~ 600 (638)
||.|+..|+..-+++|+-+|||++++|..|.||+.+|-..||-++.+-|++
T Consensus 171 LHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e 221 (669)
T KOG0818|consen 171 LHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELAERLVE 221 (669)
T ss_pred hHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999887766653
No 5
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []. The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....
Probab=100.00 E-value=2.2e-35 Score=261.22 Aligned_cols=115 Identities=49% Similarity=0.910 Sum_probs=95.9
Q ss_pred hHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHHHH
Q 006616 307 KPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANS 386 (638)
Q Consensus 307 ~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~n~ 386 (638)
++++.|++.|+|+.|||||+++|+|+|+|||||||++|+|+||+||+|+|+||||+|| .|++++|++|+.+||..+|+
T Consensus 2 ~~l~~l~~~~~N~~CaDCg~~~p~w~s~~~GiflC~~Cag~HR~lg~~is~VkSi~~d--~w~~~ev~~~~~~GN~~~n~ 79 (116)
T PF01412_consen 2 KILRELLKKPGNKVCADCGAPNPTWASLNYGIFLCLECAGIHRSLGVHISRVKSITMD--NWSPEEVQRMREGGNKRANS 79 (116)
T ss_dssp HHHHHHHCSTTCTB-TTT-SBS--EEETTTTEEE-HHHHHHHHHHTTTT--EEETTTS-----HHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHcCcCcCcCCCCCCCCCCEEEeecChhhhHHHHHHHHHhcccchhccccccC--CCCHHHHHHHHHHChHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999 79999999999999999999
Q ss_pred HHHhhhccccccccCCCCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhhhccC
Q 006616 387 VWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRK 446 (638)
Q Consensus 387 i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~fv~~ 446 (638)
+||+..++ ..+|.++++...++.||++||+++.|+.+
T Consensus 80 ~~e~~~~~-----------------------~~~~~~~~~~~~~~~fI~~KY~~k~f~~~ 116 (116)
T PF01412_consen 80 IWEANSPP-----------------------PKKPPPSSDQEKREQFIRAKYVEKAFISK 116 (116)
T ss_dssp HHTTTSTT-----------------------TTTHCTTSHHHHHHHHHHHHHTTHTTS-C
T ss_pred HHHcCCCC-----------------------CCCCCCCCcHHHHHHHHHHHHHhhhhccC
Confidence 99998332 35677788889999999999999999853
No 6
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF. Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.
Probab=100.00 E-value=5.1e-34 Score=250.70 Aligned_cols=109 Identities=59% Similarity=0.982 Sum_probs=99.6
Q ss_pred cCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHHHHHHHhhhccc
Q 006616 316 CGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSR 395 (638)
Q Consensus 316 ~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~n~i~e~~~~~~ 395 (638)
|||+.|||||+++|+|+|+|||||||++|||+||+||+|||+||||+|| .|++++|++|+.+||..+|++||+.+++.
T Consensus 1 ~~N~~CaDC~~~~p~w~s~~~GifvC~~CsgiHR~lg~his~VkSl~md--~w~~~~i~~~~~~GN~~~n~~~e~~~~~~ 78 (112)
T smart00105 1 PGNKKCFDCGAPNPTWASVNLGVFLCIECSGIHRSLGVHISKVRSLTLD--TWTEEELRLLQKGGNENANSIWESNLDDF 78 (112)
T ss_pred CCCCcccCCCCCCCCcEEeccceeEhHHhHHHHHhcCCCcCeeeecccC--CCCHHHHHHHHHhhhHHHHHHHHhhCCcc
Confidence 6899999999999999999999999999999999999999999999999 79999999999999999999999999862
Q ss_pred cccccCCCCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhhhccCCC
Q 006616 396 SAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPK 448 (638)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~fv~~~~ 448 (638)
..+|.+.+....++.||+.||++++|+....
T Consensus 79 ----------------------~~~~~~~~~~~~~~~fI~~KY~~k~f~~~~~ 109 (112)
T smart00105 79 ----------------------SLKPPDSDDQQKYESFIAAKYEEKLFVPPES 109 (112)
T ss_pred ----------------------ccCCCCCchHHHHHHHHHHHHHhhhcccccc
Confidence 1344445567899999999999999987754
No 7
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=99.97 E-value=5.2e-32 Score=291.45 Aligned_cols=262 Identities=31% Similarity=0.471 Sum_probs=209.7
Q ss_pred hcCCCcceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCC
Q 006616 92 AAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGG 171 (638)
Q Consensus 92 ~~~~~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 171 (638)
.+.....|.+.|||.-| +.|..-|+.-..+.+..|++....+.| .||
T Consensus 185 ap~pp~pP~raG~lelr------g~kak~f~~vsp~~vqL~knlq~f~lg---------------igi------------ 231 (1186)
T KOG1117|consen 185 APPPPVPPPRAGWLELR------GFKAKLFVAVSPERVQLYKNLQSFPLG---------------IGI------------ 231 (1186)
T ss_pred CCCCCCCCCCccchhcc------ccccceeEEecCceeeeecccccccCC---------------cee------------
Confidence 33444558899999877 244444544445666666766554333 122
Q ss_pred CCCccccccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCC
Q 006616 172 VHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPM 251 (638)
Q Consensus 172 ~~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~~~~~~~~~~~~~ 251 (638)
.-|.+..|+|+.. ++ ..|++.||.|.|-|.|+++.+++.|+.|+|.+|+..++.
T Consensus 232 ---------t~I~m~~~nvk~v----dr-~sfdl~Tp~r~fsftaese~erq~w~ea~q~siAeTlSd------------ 285 (1186)
T KOG1117|consen 232 ---------TFIYMEVSNVKEV----DR-RSFDLNTPYREFSFTAESETERQIWGEAPQPSIAETLSD------------ 285 (1186)
T ss_pred ---------EEEeccccccccc----cc-ceeccCCceeeeeeeeccchhhhhhhhccCcccccccCh------------
Confidence 2266677777742 33 569999999999999999999999999999888654422
Q ss_pred CCCCCCCCCCCCCCCCCCCCcchhhhhhccccccccccccccccccccccccCCchHHHHHHcccCCcccccCCCCCCCc
Q 006616 252 GSGHHRSASDSSSFESSDFDHAAVEEYTSERNLTSAYHERQSRGSQQQRSCVKSEKPIDVLRRVCGNDRCADCGAPEPDW 331 (638)
Q Consensus 252 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~c~dC~~~~p~w 331 (638)
-.....++....|..|||||++.|+|
T Consensus 286 ------------------------------------------------------~evaeriW~ne~nr~cadC~ssrPdw 311 (1186)
T KOG1117|consen 286 ------------------------------------------------------YEVAERIWLNEENRECADCGSSRPDW 311 (1186)
T ss_pred ------------------------------------------------------HHHHHHHHhccccccccccCCCCCcc
Confidence 01234567788999999999999999
Q ss_pred eecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHHHHHHHhhhccccccccCCCCCCCCCCC
Q 006616 332 ASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSD 411 (638)
Q Consensus 332 ~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~n~i~e~~~~~~~~~~~~~~~~~~~~~~ 411 (638)
||+||+|+||-.|+|-||+||.-+|||||++||++.|+.+.+++|..+||.++|++|.+++++++..+.+
T Consensus 312 asiNL~vvIck~caGqhrslgs~dSkvrslkmd~svwsneliElfivlgn~~an~Fwa~nl~~~e~lh~d---------- 381 (1186)
T KOG1117|consen 312 ASINLCVVICKPCAGQHRSLGSGDSKVRSLKMDPSVWSNELIELFIVLGNPRANRFWAGNLPPNEHLHPD---------- 381 (1186)
T ss_pred cccccceEEcccCCCccccCCCccccccccccCcccccchhhhhheeecCcccccccccCCCCccccCCC----------
Confidence 9999999999999999999999999999999999999999999999999999999999999986644333
Q ss_pred CccccccCCCCCCCCHHHHHHHHHHHHhhhhhccCCCCcccccccccceecccccccchhhhhhhcccccCccccccch
Q 006616 412 KPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV 490 (638)
Q Consensus 412 ~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~fv~~~~~~~~~~~~~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~ 490 (638)
++.+.|..||..||.+.+|....+......++.++|+.||..-|+..-..+| -.|+|+++-.+++
T Consensus 382 -------------ssp~~r~~fi~~Kykeg~fRk~~~~~~~~sel~kalcaaV~~pdl~etma~l-~sga~v~~f~gd~ 446 (1186)
T KOG1117|consen 382 -------------SSPSTRRQFIKEKYKEGKFRKEHPVEICSSELPKALCAAVNVPDLLETMALL-FSGADVMCFTGDP 446 (1186)
T ss_pred -------------CCcchhhhHHHHHhhccccccccccccccccCChhheeeeeCCchhhHHHHh-hccccceeecCCC
Confidence 3445699999999999999999988777788999999999998887776666 4699999876665
No 8
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]
Probab=99.97 E-value=9.5e-32 Score=273.38 Aligned_cols=119 Identities=45% Similarity=0.785 Sum_probs=106.0
Q ss_pred chHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHHH
Q 006616 306 EKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFAN 385 (638)
Q Consensus 306 ~~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~n 385 (638)
..++..|++.++|+.|||||+++|+|+|+||||||||+||||||+|||||||||||+|| .|++++|++|...||..||
T Consensus 8 ~~~l~~l~~~~~Nk~CaDCga~~P~W~S~nlGvfiCi~CagvHRsLGvhiS~VKSitLD--~wt~~~l~~m~~gGN~~a~ 85 (319)
T COG5347 8 RKLLKLLKSDSSNKKCADCGAPNPTWASVNLGVFLCIDCAGVHRSLGVHISKVKSLTLD--NWTEEELRRMEVGGNSNAN 85 (319)
T ss_pred HHHHHHHhhccccCccccCCCCCCceEecccCeEEEeecchhhhccccceeeeeeeecc--cCCHHHHHHHHHhcchhhh
Confidence 46778899999999999999999999999999999999999999999999999999999 7999999999999999999
Q ss_pred HHHHhhhccccccccCCCCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhhhccCC
Q 006616 386 SVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKP 447 (638)
Q Consensus 386 ~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~fv~~~ 447 (638)
++||......- ..+........+++.||+.||..++|+...
T Consensus 86 ~~~e~~~~~~~---------------------~~~~k~~yd~~v~~~y~~~ky~~~~~~~~~ 126 (319)
T COG5347 86 RFYEKNLLDQL---------------------LLPIKAKYDSSVAKKYIRKKYELKKFIDDS 126 (319)
T ss_pred hHhccCCCccc---------------------ccccccccCHHHHHHHHHHHHHhhhccccc
Confidence 99998765410 123344556678999999999999999863
No 9
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional
Probab=99.96 E-value=1.6e-29 Score=264.43 Aligned_cols=121 Identities=21% Similarity=0.463 Sum_probs=106.3
Q ss_pred cCCchHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchH
Q 006616 303 VKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNA 382 (638)
Q Consensus 303 ~~~~~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~ 382 (638)
.+++++++.|++.|+|+.|+|||+.+|.|||+|||||||++||||||+|| +|||||+|| .|++++|++|+.+||.
T Consensus 8 ERnekILreLlklPgNk~CADCgs~~P~WASiNlGIFICi~CSGIHRsLG---hRVKSLSLD--kWT~EEVe~Mk~gGN~ 82 (648)
T PLN03119 8 ERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREFT---HRVKSVSMS--KFTSKEVEVLQNGGNQ 82 (648)
T ss_pred HHHHHHHHHHhhCcCCCccccCCCCCCCceeeccceEEeccchhhhccCC---ceeeccccC--CCCHHHHHHHHHhchH
Confidence 35678999999999999999999999999999999999999999999998 599999999 7999999999999999
Q ss_pred HHHHHHHhhhccccccccCCCCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhhhccCCCCc
Q 006616 383 FANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKDN 450 (638)
Q Consensus 383 ~~n~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~fv~~~~~~ 450 (638)
++|++||++++... .++........+++||+.||++|+|+.....+
T Consensus 83 ~AN~iyeanw~~~~----------------------~~~P~~sD~e~lr~FIR~KYVeKRF~~~~~~d 128 (648)
T PLN03119 83 RAREIYLKNWDHQR----------------------QRLPENSNAERVREFIKNVYVQKKYAGANDAD 128 (648)
T ss_pred HHHHHHHhhccccc----------------------CCCCCCccHHHHHHHHHHHHhhhhccCcCCCC
Confidence 99999999997621 22333344667789999999999999876543
No 10
>PLN03131 hypothetical protein; Provisional
Probab=99.95 E-value=4.4e-29 Score=263.19 Aligned_cols=119 Identities=22% Similarity=0.475 Sum_probs=105.0
Q ss_pred CCchHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHH
Q 006616 304 KSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAF 383 (638)
Q Consensus 304 ~~~~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~ 383 (638)
+++++++.|++.|+|+.|+||++++|+|||+|||||||++||||||+|| +|||||+|| .|++++|+.|+.+||.+
T Consensus 9 rnekiLreLlk~PgNk~CADCga~~P~WASiNlGIFICi~CSGIHRsLg---hRVKSVTLD--~WtdeEV~~Mk~gGN~~ 83 (705)
T PLN03131 9 RNEKIIRGLMKLPPNRRCINCNSLGPQFVCTNFWTFICMTCSGIHREFT---HRVKSVSMS--KFTSQDVEALQNGGNQR 83 (705)
T ss_pred HHHHHHHHHhhCcCCCccccCCCCCCCeeEeccceEEchhchhhhcccC---cccccccCC--CCCHHHHHHHHHhccHH
Confidence 4678899999999999999999999999999999999999999999997 499999999 79999999999999999
Q ss_pred HHHHHHhhhccccccccCCCCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhhhccCCCC
Q 006616 384 ANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKD 449 (638)
Q Consensus 384 ~n~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~fv~~~~~ 449 (638)
+|+|||++++... .++..++....++.||+.||++|+|+.....
T Consensus 84 AN~iyeanwd~~r----------------------~~lP~~sd~ekrr~FIR~KYVeKRFa~~~s~ 127 (705)
T PLN03131 84 AREIYLKDWDQQR----------------------QRLPDNSKVDKIREFIKDIYVDKKYAGGKTH 127 (705)
T ss_pred HHHHHHhhccccc----------------------CCCCCCccHHHHHHHHHHHHhhhhhhcCCCC
Confidence 9999999987621 1222344556788999999999999987643
No 11
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional
Probab=99.93 E-value=6.4e-26 Score=226.15 Aligned_cols=119 Identities=33% Similarity=0.508 Sum_probs=97.2
Q ss_pred hHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHHHH
Q 006616 307 KPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANS 386 (638)
Q Consensus 307 ~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~n~ 386 (638)
.+++.|+..|+|+.|+|||+++|+|+|+|||||||++|+||||+||+|||+|||++|| .|++++|++|+..||.++|.
T Consensus 11 ~vfrkL~~kPgNk~CaDCga~nPtWASvn~GIFLCl~CSGVHRsLGvHISfVRSltLD--~Ws~eqL~~Mk~GGN~rA~~ 88 (395)
T PLN03114 11 SVFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLD--SWSSEQLKMMIYGGNNRAQV 88 (395)
T ss_pred HHHHHHHhCcCCCcCccCCCCCCCceeeccceeehhhhhHhhccCCCCCceeecccCC--CCCHHHHHHHHHhcCHHHHH
Confidence 5688899999999999999999999999999999999999999999999999999999 79999999999999999999
Q ss_pred HHHhhhccccccccCCCCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhhhccCC
Q 006616 387 VWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKP 447 (638)
Q Consensus 387 i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~fv~~~ 447 (638)
+|+..--... . ..+-.-.+....+-+.+.++++.+.+....
T Consensus 89 fF~qhG~~~~------~--------------~~~~KY~S~aA~~Yre~L~keVa~~~a~~~ 129 (395)
T PLN03114 89 FFKQYGWSDG------G--------------KTEAKYTSRAADLYKQILAKEVAKSKAEEE 129 (395)
T ss_pred HHHHcCCCCC------C--------------CcccccCCHHHHHHHHHHHHHHHHhhhccc
Confidence 9985321100 0 011122233455556688888888887444
No 12
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.92 E-value=6.7e-26 Score=224.21 Aligned_cols=82 Identities=39% Similarity=0.799 Sum_probs=76.0
Q ss_pred hHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHHHH
Q 006616 307 KPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANS 386 (638)
Q Consensus 307 ~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~n~ 386 (638)
..|..++...+|+.|+||++++|+|||++||||||.+|||+||+||||||+||||||| .|.+.+|+.|.+.||.+++.
T Consensus 8 r~L~~lkp~deNk~CfeC~a~NPQWvSvsyGIfICLECSG~HRgLGVhiSFVRSVTMD--~wkeiel~kMeaGGN~~~~e 85 (386)
T KOG0704|consen 8 RVLLELKPQDENKKCFECGAPNPQWVSVSYGIFICLECSGKHRGLGVHISFVRSVTMD--KWKEIELKKMEAGGNERFRE 85 (386)
T ss_pred HHHHhcCccccCCceeecCCCCCCeEeecccEEEEEecCCcccccceeeEEEEeeecc--cccHHHHHHHHhccchhHHH
Confidence 4455555556999999999999999999999999999999999999999999999999 79999999999999999999
Q ss_pred HHHh
Q 006616 387 VWEE 390 (638)
Q Consensus 387 i~e~ 390 (638)
+++.
T Consensus 86 FL~s 89 (386)
T KOG0704|consen 86 FLSS 89 (386)
T ss_pred HHhh
Confidence 9874
No 13
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=99.92 E-value=1.1e-25 Score=230.42 Aligned_cols=84 Identities=45% Similarity=0.790 Sum_probs=80.4
Q ss_pred chHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHHH
Q 006616 306 EKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFAN 385 (638)
Q Consensus 306 ~~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~n 385 (638)
..+++.|+..+.|+.|+|||+++|+|+|+.|||||||+||++||+||||||+|||..|| .|+.++|+.|+..||..|+
T Consensus 11 ~~vfkkLRs~~~NKvCFDCgAknPtWaSVTYGIFLCiDCSAvHRnLGVHiSFVRSTnLD--sWs~~qLR~M~~GGN~nA~ 88 (454)
T KOG0706|consen 11 QTVFKKLRSQSENKVCFDCGAKNPTWASVTYGIFLCIDCSAVHRNLGVHISFVRSTNLD--SWSWEQLRRMQVGGNANAR 88 (454)
T ss_pred HHHHHHHhcCCCCceecccCCCCCCceeecceEEEEEecchhhhccccceEEEeecccc--cCCHHHHhHhhhcCchhHH
Confidence 46788999999999999999999999999999999999999999999999999999999 6999999999999999999
Q ss_pred HHHHhh
Q 006616 386 SVWEEL 391 (638)
Q Consensus 386 ~i~e~~ 391 (638)
.+++..
T Consensus 89 ~FFkqh 94 (454)
T KOG0706|consen 89 VFFKQH 94 (454)
T ss_pred HHHHHc
Confidence 998753
No 14
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.8e-23 Score=189.99 Aligned_cols=157 Identities=22% Similarity=0.260 Sum_probs=134.4
Q ss_pred ccceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCC-
Q 006616 457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGT- 535 (638)
Q Consensus 457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~- 535 (638)
...|++|+..|..+.|.-||...++.||-+|..| .++|+.+...+...++..|+..
T Consensus 39 Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaG-----------------------WtPlhia~s~g~~evVk~Ll~r~ 95 (226)
T KOG4412|consen 39 RTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAG-----------------------WTPLHIAASNGNDEVVKELLNRS 95 (226)
T ss_pred CceeeeeeecCchhHHHHHHhcCCCCCCCccccC-----------------------CchhhhhhhcCcHHHHHHHhcCC
Confidence 3578999988888877666657788888887666 3334444444455555555555
Q ss_pred CCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCH
Q 006616 536 SEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTS 615 (638)
Q Consensus 536 ~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~Tp 615 (638)
|+++|.....|.|+||||+..|..+++.+|+++|+.++.+|..|.||||.|+.-|..+++++|+..|+.+|..|..|+||
T Consensus 96 ~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~Tp 175 (226)
T KOG4412|consen 96 GADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTP 175 (226)
T ss_pred CCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcHHHHHHHhhCCC
Q 006616 616 LELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 616 L~~A~~~g~~d~eiv~lLle~ga 638 (638)
||.|...|+ .++..+|+++||
T Consensus 176 L~~al~e~~--~d~a~lLV~~gA 196 (226)
T KOG4412|consen 176 LHHALAEGH--PDVAVLLVRAGA 196 (226)
T ss_pred HHHHHhccC--chHHHHHHHhcc
Confidence 999988888 678889999886
No 15
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.7e-21 Score=177.14 Aligned_cols=124 Identities=27% Similarity=0.297 Sum_probs=110.2
Q ss_pred CCcccccccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHhC
Q 006616 512 RSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQY-GANINATDSRGLTPLHRCILRG 590 (638)
Q Consensus 512 ~~~~~l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-gadvn~~d~~G~TpLh~A~~~g 590 (638)
+++++++|....... +..+|...+..+|.+|+.||||||+||..|+.++|+-|+.+ |+|+|+.+..|.|+||||+..|
T Consensus 39 Rt~LHwa~S~g~~ei-v~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~ 117 (226)
T KOG4412|consen 39 RTPLHWACSFGHVEI-VYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKG 117 (226)
T ss_pred CceeeeeeecCchhH-HHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCC
Confidence 455555555444333 33344488999999999999999999999999999999999 9999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616 591 KAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 591 ~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga 638 (638)
+.+|+.+|+++|+.++++|..|.||||-|+..|. .+++++|+..||
T Consensus 118 r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGk--lkvie~Li~~~a 163 (226)
T KOG4412|consen 118 RLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGK--LKVIEYLISQGA 163 (226)
T ss_pred hhhHHHHHHhcCCCCcccccccCchhHHHHhccc--hhhHHHHHhcCC
Confidence 9999999999999999999999999999999998 999999998875
No 16
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=99.84 E-value=6.9e-21 Score=199.04 Aligned_cols=161 Identities=24% Similarity=0.424 Sum_probs=125.8
Q ss_pred ChhhhhHHHhHHHHHhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCCCccccccc
Q 006616 1 MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWASNGSNGSPNGDGIQAIGRS 80 (638)
Q Consensus 1 ~~a~~~ff~~G~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (638)
+|++++|||.|++|.++|.||.++|+..||++|+.++.++.+++++|.++++...+..+
T Consensus 203 l~slf~f~h~g~el~qDF~pfk~qlq~s~QnTrn~f~~Tr~E~EeLkKkmke~p~e~k~--------------------- 261 (812)
T KOG1451|consen 203 LYSLFSFFHVGSELHQDFKPFKDQLQTSVQNTRNNFNATRAEAEELKKKMKESPTEDKR--------------------- 261 (812)
T ss_pred HHHHHHHhhhhHHHHhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHHhhCcccccC---------------------
Confidence 48899999999999999999999999999999999999999999988888764432211
Q ss_pred hhHHHHHHHhhhcCCCcceeEEEEEEeecCC-CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCc
Q 006616 81 SHKMIEAVMQSAAKGKVQTIRQGYLSKRSSN-LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGL 159 (638)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~k~GyL~Kr~~~-~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~ 159 (638)
...++|+||||.+.+. +.+.|.|.||++..+...+-.-....+ .|
T Consensus 262 ---------------p~p~t~eGYlY~QEK~~~g~sWvKyYC~Y~retk~~TMvp~~qk------------------~g- 307 (812)
T KOG1451|consen 262 ---------------PTPSTKEGYLYMQEKSKIGKSWVKYYCVYSRETKIFTMVPANQK------------------TG- 307 (812)
T ss_pred ---------------CCCcccceeeeehhhhhccchhhhheeEeecccceEEEeecccC------------------CC-
Confidence 1223589999988654 557899999999876544322222211 11
Q ss_pred cccccccccCCCCCCccccccceeecccceeecCCCCCCCcceEEEecCCe--eEEEEeCCHHHHHHHHHHHHHH
Q 006616 160 LSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTK--NYTLQAESALDQMDWIEKITGV 232 (638)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~r--t~~lqA~se~e~~~Wi~ai~~~ 232 (638)
.+....+++.|..|+.+. .+.+|+||||+|.+.+| +.++||-||+|+..||+|+.++
T Consensus 308 ---------------~k~g~~~~~~lKsC~RRk-tdSIdKRFCFDve~~erpgviTmQALSE~drrlWmeAMDG~ 366 (812)
T KOG1451|consen 308 ---------------TKMGQTATFKLKSCSRRK-TDSIDKRFCFDVEVEERPGVITMQALSEKDRRLWMEAMDGA 366 (812)
T ss_pred ---------------CcCCCcceEEehhhccCc-ccccccceeeeeeecccCCeeehHhhhhhHHHHHHHHhcCC
Confidence 112233457888998885 68899999999999876 8999999999999999999765
No 17
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.83 E-value=9.4e-21 Score=202.70 Aligned_cols=156 Identities=27% Similarity=0.316 Sum_probs=131.3
Q ss_pred cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCC
Q 006616 458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE 537 (638)
Q Consensus 458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~ 537 (638)
..|++|+-+|.++ |.++|+++|+|||...+.. ..++++.|..++...++.+|+++||
T Consensus 80 tlLHWAAiNNrl~-v~r~li~~gadvn~~gG~l----------------------~stPLHWAar~G~~~vv~lLlqhGA 136 (600)
T KOG0509|consen 80 TLLHWAAINNRLD-VARYLISHGADVNAIGGVL----------------------GSTPLHWAARNGHISVVDLLLQHGA 136 (600)
T ss_pred cceeHHHHcCcHH-HHHHHHHcCCCccccCCCC----------------------CCCcchHHHHcCcHHHHHHHHHcCC
Confidence 4555555554443 5566667777777766533 4667777788888888999999999
Q ss_pred CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCcc-CCCCCHH
Q 006616 538 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN-REGKTSL 616 (638)
Q Consensus 538 ~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d-~~g~TpL 616 (638)
+++..|.+|.||||+||..|+..+|-+||.+|+|+|.+|.+|+||||+|+..|+...+..||+.|+.++..| .+|.|||
T Consensus 137 dpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpL 216 (600)
T KOG0509|consen 137 DPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPL 216 (600)
T ss_pred CCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchH
Confidence 999999999999999999999999999999999999999999999999999999888999999999999988 8999999
Q ss_pred HHHHHcCCCcHHHHHHHhhCCC
Q 006616 617 ELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 617 ~~A~~~g~~d~eiv~lLle~ga 638 (638)
|+|+..|+ ..++.+|++.|+
T Consensus 217 Hwa~~~gN--~~~v~Ll~~g~~ 236 (600)
T KOG0509|consen 217 HWAVVGGN--LTAVKLLLEGGA 236 (600)
T ss_pred HHHHhcCC--cceEehhhhcCC
Confidence 99999998 778886666653
No 18
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.83 E-value=6.6e-21 Score=203.85 Aligned_cols=160 Identities=24% Similarity=0.262 Sum_probs=144.0
Q ss_pred cccccceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCccccccccc
Q 006616 454 HSVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLA 533 (638)
Q Consensus 454 ~~~~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~ 533 (638)
+.....++.|+..|+.+.|..++...|.++|..|.++ ...++.++.++...+..+|+
T Consensus 42 d~~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g-----------------------~tlLHWAAiNNrl~v~r~li 98 (600)
T KOG0509|consen 42 DSSLDDIVKATQYGELETVKELVESEGESVNNPDREG-----------------------VTLLHWAAINNRLDVARYLI 98 (600)
T ss_pred chhhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCC-----------------------ccceeHHHHcCcHHHHHHHH
Confidence 3445678899999999999888755599999988866 55677888899999999999
Q ss_pred CCCCCCCcCC-CCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCC
Q 006616 534 GTSEGQTMDD-LEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREG 612 (638)
Q Consensus 534 ~~~~~~~~~d-~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g 612 (638)
..|+++|..+ .-+.||||+||++|++.+|.+|+++|||++.+|..|.||||+|++.|+..+|.+||.+|+|++.+|.+|
T Consensus 99 ~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~g 178 (600)
T KOG0509|consen 99 SHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNG 178 (600)
T ss_pred HcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCC
Confidence 9999999988 679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616 613 KTSLELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 613 ~TpL~~A~~~g~~d~eiv~lLle~ga 638 (638)
+|||++|+.+|+. ..+.+||.-||
T Consensus 179 rTpLmwAaykg~~--~~v~~LL~f~a 202 (600)
T KOG0509|consen 179 RTPLMWAAYKGFA--LFVRRLLKFGA 202 (600)
T ss_pred CCHHHHHHHhccc--HHHHHHHHhcc
Confidence 9999999999983 33888887664
No 19
>PHA02791 ankyrin-like protein; Provisional
Probab=99.82 E-value=6.9e-20 Score=187.85 Aligned_cols=177 Identities=14% Similarity=0.108 Sum_probs=137.1
Q ss_pred ccceecccccccchhhhhhhcccccCccccccch-----hccchhhHHHHHhhhhccc---cCCCcccccccccCCcccc
Q 006616 457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-----SCISSLTLAKAMLLNEQTS---LERSSSSLTGNSSDRSSSG 528 (638)
Q Consensus 457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~-----~~~~~~~l~~~ll~~~~~~---~~~~~~~l~~~~~~~~~~~ 528 (638)
...|+.|+..++.+ ++++|++.|+++|..++.. ....+..+++.|+..+... .....++++.+...+...+
T Consensus 31 ~TpLh~Aa~~g~~e-iv~~Ll~~ga~~n~~d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~ei 109 (284)
T PHA02791 31 HSALYYAIADNNVR-LVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQT 109 (284)
T ss_pred CcHHHHHHHcCCHH-HHHHHHHCcCCCcCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 35688888877655 5566778999998876432 1223345666666543221 1122344555555666778
Q ss_pred cccccCCCCCCCcCCCCCC-cHHHHHHHhCCHHHHHHHHHcCCCCcccC-CCCCcHHHHHHHhCCHHHHHHHHhCCCCCC
Q 006616 529 SLNLAGTSEGQTMDDLEGC-TLLHLACDSADIGMLELLLQYGANINATD-SRGLTPLHRCILRGKAMFAKLLLTRGADPR 606 (638)
Q Consensus 529 ~~lL~~~~~~~~~~d~~G~-TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d-~~G~TpLh~A~~~g~~~~v~lLl~~gad~~ 606 (638)
+.+|+..|++++..+..|+ ||||+|+..|+.++|++|+.+|.+. .| ..|.||||+|+..|+.+++++||++||+++
T Consensus 110 vk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n 187 (284)
T PHA02791 110 VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTN 187 (284)
T ss_pred HHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 8888999999999988885 8999999999999999999987654 23 258999999999999999999999999999
Q ss_pred CccCCCCCH-HHHHHHcCCCcHHHHHHHhhCCC
Q 006616 607 AVNREGKTS-LELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 607 ~~d~~g~Tp-L~~A~~~g~~d~eiv~lLle~ga 638 (638)
.+|..|.|| ||+|+..|+ .++|++|+++||
T Consensus 188 ~~d~~g~t~~L~~Aa~~~~--~e~v~lLl~~Ga 218 (284)
T PHA02791 188 TNNSLLFIPDIKLAIDNKD--LEMLQALFKYDI 218 (284)
T ss_pred cccCCCCChHHHHHHHcCC--HHHHHHHHHCCC
Confidence 999999987 999999998 999999999986
No 20
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.82 E-value=6.3e-20 Score=200.14 Aligned_cols=179 Identities=18% Similarity=0.223 Sum_probs=140.3
Q ss_pred ccceecccccccchhhhhhhcccccCccccccchhcc-------chhhHHHHHhhhhcccc----CCCcccccccccCCc
Q 006616 457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCI-------SSLTLAKAMLLNEQTSL----ERSSSSLTGNSSDRS 525 (638)
Q Consensus 457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~-------~~~~l~~~ll~~~~~~~----~~~~~~l~~~~~~~~ 525 (638)
...|+.|+..++.+ ++++|++.|+++|..+..+..+ ++..+++.++..+.... ....++++.+...+.
T Consensus 36 ~tpL~~A~~~~~~~-~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~ 114 (413)
T PHA02875 36 ISPIKLAMKFRDSE-AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKK 114 (413)
T ss_pred CCHHHHHHHcCCHH-HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCC
Confidence 35677777776665 5577778899888775544222 33455555554432211 122344555555666
Q ss_pred ccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC
Q 006616 526 SSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605 (638)
Q Consensus 526 ~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~ 605 (638)
..++.+|+..|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+++
T Consensus 115 ~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~ 194 (413)
T PHA02875 115 LDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANI 194 (413)
T ss_pred HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Confidence 77888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCC-CHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616 606 RAVNREGK-TSLELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 606 ~~~d~~g~-TpL~~A~~~g~~d~eiv~lLle~ga 638 (638)
+..+..|. ||+|+|+..|+ .+++++|+++||
T Consensus 195 n~~~~~~~~t~l~~A~~~~~--~~iv~~Ll~~ga 226 (413)
T PHA02875 195 DYFGKNGCVAALCYAIENNK--IDIVRLFIKRGA 226 (413)
T ss_pred CcCCCCCCchHHHHHHHcCC--HHHHHHHHHCCc
Confidence 99888875 78888999987 889999999986
No 21
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.80 E-value=3.1e-19 Score=154.32 Aligned_cols=94 Identities=27% Similarity=0.480 Sum_probs=74.2
Q ss_pred eeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccc
Q 006616 99 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 178 (638)
Q Consensus 99 ~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (638)
++|+|||.|+++. .++|+||||+|+ ++.|+||++... ..
T Consensus 2 v~k~G~L~Kkg~~-~k~WkkRwfvL~-~~~L~yyk~~~~---------------------------------------~~ 40 (100)
T cd01233 2 VSKKGYLNFPEET-NSGWTRRFVVVR-RPYLHIYRSDKD---------------------------------------PV 40 (100)
T ss_pred cceeEEEEeeCCC-CCCcEEEEEEEE-CCEEEEEccCCC---------------------------------------cc
Confidence 4699999999664 589999999999 577777777532 12
Q ss_pred ccceeecccceeecCCCC---CCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616 179 ARHTVNLLTSTIKVDADQ---SDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI 233 (638)
Q Consensus 179 ~~~~i~l~~~~v~~~~~~---~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i 233 (638)
+.+.|+|..+.|...++. ..+++||.|++++|+|+|+|+|++|+++||++|+.++
T Consensus 41 ~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t~~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 41 ERGVINLSTARVEHSEDQAAMVKGPNTFAVCTKHRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred EeeEEEecccEEEEccchhhhcCCCcEEEEECCCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 334577777777654332 1357999999999999999999999999999998765
No 22
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.80 E-value=3.3e-19 Score=194.48 Aligned_cols=178 Identities=17% Similarity=0.173 Sum_probs=146.7
Q ss_pred cceecccccccchhhhhhhcccccCccccccchhcc-------chhhHHHHHhhhhcccc---CCCcccccccccCCccc
Q 006616 458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCI-------SSLTLAKAMLLNEQTSL---ERSSSSLTGNSSDRSSS 527 (638)
Q Consensus 458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~-------~~~~l~~~ll~~~~~~~---~~~~~~l~~~~~~~~~~ 527 (638)
..|+.|+..|+.+.+ ++|++.|+|+|..+..+..+ .+..++++|+..+.... .....+++.+...+...
T Consensus 4 ~~L~~A~~~g~~~iv-~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~ 82 (413)
T PHA02875 4 VALCDAILFGELDIA-RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVK 82 (413)
T ss_pred hHHHHHHHhCCHHHH-HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHH
Confidence 478899999987655 56669999999987666433 34466777776544321 22334555555666666
Q ss_pred ccccccCCCCCCC-cCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC
Q 006616 528 GSLNLAGTSEGQT-MDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPR 606 (638)
Q Consensus 528 ~~~lL~~~~~~~~-~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~ 606 (638)
.+..|+..|+.++ ..+.+|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++
T Consensus 83 ~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~ 162 (413)
T PHA02875 83 AVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLD 162 (413)
T ss_pred HHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC
Confidence 7777888877654 456789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616 607 AVNREGKTSLELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 607 ~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga 638 (638)
.+|..|.||||+|+..|+ .+++++|+++||
T Consensus 163 ~~d~~g~TpL~~A~~~g~--~eiv~~Ll~~ga 192 (413)
T PHA02875 163 IEDCCGCTPLIIAMAKGD--IAICKMLLDSGA 192 (413)
T ss_pred CCCCCCCCHHHHHHHcCC--HHHHHHHHhCCC
Confidence 999999999999999998 899999999986
No 23
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.79 E-value=3.4e-19 Score=198.76 Aligned_cols=178 Identities=17% Similarity=0.170 Sum_probs=135.7
Q ss_pred cceeccccccc-----chhhhhhhcccccCccccccchhccc----------hhhHHHHHhhhhccc------cCCCccc
Q 006616 458 HQIWEGVRTND-----KKAVYRHIVNFEVDVNAVYEQVSCIS----------SLTLAKAMLLNEQTS------LERSSSS 516 (638)
Q Consensus 458 ~~L~~Av~~~d-----~~~v~~lLl~~gaDvN~~~~~~~~~~----------~~~l~~~ll~~~~~~------~~~~~~~ 516 (638)
..|+.|+..+. ..+++++|++.|||+|..+..+..+. +.+++++|+..+.+. .+.++++
T Consensus 71 tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh 150 (494)
T PHA02989 71 TPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLH 150 (494)
T ss_pred CcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHH
Confidence 44555554432 34677888888999888877664432 245666666654332 2345555
Q ss_pred ccccccCCcccccccccCCCCCCCc-CCCCCCcHHHHHHHhC----CHHHHHHHHHcCCCCcc-----------------
Q 006616 517 LTGNSSDRSSSGSLNLAGTSEGQTM-DDLEGCTLLHLACDSA----DIGMLELLLQYGANINA----------------- 574 (638)
Q Consensus 517 l~~~~~~~~~~~~~lL~~~~~~~~~-~d~~G~TpLh~Aa~~g----~~~~v~~Ll~~gadvn~----------------- 574 (638)
+++........++.+|+..|++++. .+..|.||||+|+..+ +.+++++|+++|+++|.
T Consensus 151 ~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~ 230 (494)
T PHA02989 151 MYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNK 230 (494)
T ss_pred HHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhch
Confidence 5555555566777888888888887 5778888888887654 78888888888877654
Q ss_pred ---------------------cCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHH
Q 006616 575 ---------------------TDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAIL 633 (638)
Q Consensus 575 ---------------------~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lL 633 (638)
+|..|+||||+|+..|+.+++++|+++|||++.+|..|.||||+|+..|+ .++|++|
T Consensus 231 ~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~--~~iv~~L 308 (494)
T PHA02989 231 ILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGN--IDMLNRI 308 (494)
T ss_pred hhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC--HHHHHHH
Confidence 45569999999999999999999999999999999999999999999998 8999999
Q ss_pred hhCC
Q 006616 634 SDSH 637 (638)
Q Consensus 634 le~g 637 (638)
++.+
T Consensus 309 L~~~ 312 (494)
T PHA02989 309 LQLK 312 (494)
T ss_pred HhcC
Confidence 9865
No 24
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.79 E-value=3.2e-19 Score=198.22 Aligned_cols=179 Identities=23% Similarity=0.270 Sum_probs=132.8
Q ss_pred cceecccccccchhhhhhhcccccCccccccchhccchhh-------HHHHHhhhhcc-ccCCCcccccccc--------
Q 006616 458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLT-------LAKAMLLNEQT-SLERSSSSLTGNS-------- 521 (638)
Q Consensus 458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~-------l~~~ll~~~~~-~~~~~~~~l~~~~-------- 521 (638)
..|+.|+..|+.+.| ++|++.|+|+|..+..+..+.++. .++.++..... ........+..+.
T Consensus 39 tPLh~A~~~g~~e~v-k~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~ 117 (477)
T PHA02878 39 IPLHQAVEARNLDVV-KSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIF 117 (477)
T ss_pred chHHHHHHcCCHHHH-HHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHH
Confidence 458888888877655 566688999999888775554432 22223221110 0000000000000
Q ss_pred -------------------------cCCcccccccccCCCCCCCcCCCC-CCcHHHHHHHhCCHHHHHHHHHcCCCCccc
Q 006616 522 -------------------------SDRSSSGSLNLAGTSEGQTMDDLE-GCTLLHLACDSADIGMLELLLQYGANINAT 575 (638)
Q Consensus 522 -------------------------~~~~~~~~~lL~~~~~~~~~~d~~-G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~ 575 (638)
......++.+|+..|++++..|.. |.||||+|+..|+.+++++|+++|+++|.+
T Consensus 118 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~ 197 (477)
T PHA02878 118 KIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIP 197 (477)
T ss_pred HHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCc
Confidence 001123667788899999999988 999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616 576 DSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 576 d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga 638 (638)
|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+. +.+++++|+++|+
T Consensus 198 d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~-~~~iv~~Ll~~ga 259 (477)
T PHA02878 198 DKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCK-DYDILKLLLEHGV 259 (477)
T ss_pred CCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcC-CHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999997631 3889999999885
No 25
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.79 E-value=2.3e-19 Score=176.91 Aligned_cols=154 Identities=16% Similarity=0.143 Sum_probs=93.1
Q ss_pred cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCC
Q 006616 458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE 537 (638)
Q Consensus 458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~ 537 (638)
..|+.|+..++...|..++ +. +|..+..+ .+++++++........++.+|++.|+
T Consensus 23 ~pL~~A~~~~~~~~vk~Li-~~---~n~~~~~g---------------------~TpLh~a~~~~~~~~eiv~~Ll~~ga 77 (209)
T PHA02859 23 NPLFYYVEKDDIEGVKKWI-KF---VNDCNDLY---------------------ETPIFSCLEKDKVNVEILKFLIENGA 77 (209)
T ss_pred cHHHHHHHhCcHHHHHHHH-Hh---hhccCccC---------------------CCHHHHHHHcCCCCHHHHHHHHHCCC
Confidence 4577777777777665554 32 33333333 23333333222334555666666777
Q ss_pred CCCcCC-CCCCcHHHHHHHh---CCHHHHHHHHHcCCCCcccCCCCCcHHHHHHH--hCCHHHHHHHHhCCCCCCCccCC
Q 006616 538 GQTMDD-LEGCTLLHLACDS---ADIGMLELLLQYGANINATDSRGLTPLHRCIL--RGKAMFAKLLLTRGADPRAVNRE 611 (638)
Q Consensus 538 ~~~~~d-~~G~TpLh~Aa~~---g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~--~g~~~~v~lLl~~gad~~~~d~~ 611 (638)
+++..+ ..|.||||+|+.. ++.+++++|+++|+++|.+|..|.||||+|+. .++.+++++|+++|++++.+|.+
T Consensus 78 dvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~ 157 (209)
T PHA02859 78 DVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFD 157 (209)
T ss_pred CCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCC
Confidence 777665 3567777766543 35677777777777777777777777776654 34667777777777777777777
Q ss_pred CCCHHHHH-HHcCCCcHHHHHHHhhCCC
Q 006616 612 GKTSLELA-VESNFADSEVLAILSDSHG 638 (638)
Q Consensus 612 g~TpL~~A-~~~g~~d~eiv~lLle~ga 638 (638)
|.||||.+ +..++ .+++++|+++|+
T Consensus 158 g~t~Lh~~a~~~~~--~~iv~~Ll~~Ga 183 (209)
T PHA02859 158 NNNILYSYILFHSD--KKIFDFLTSLGI 183 (209)
T ss_pred CCcHHHHHHHhcCC--HHHHHHHHHcCC
Confidence 77777743 33443 667777776664
No 26
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.79 E-value=5.5e-19 Score=153.37 Aligned_cols=93 Identities=20% Similarity=0.527 Sum_probs=68.1
Q ss_pred EEEEEEeecCCCCCCceeeEEEEecCceEEEEecCC-CCCCCCCCccccccCcCcccCCccccccccccCCCCCCccccc
Q 006616 101 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQC-SKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA 179 (638)
Q Consensus 101 k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~-~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (638)
|+|||.|+++...++|+||||||+ ++.|+||+++. ..+.|
T Consensus 1 KeG~L~K~g~~~~k~wkkRwFvL~-~~~L~Yyk~~~d~~~~G-------------------------------------- 41 (103)
T cd01251 1 KEGFMEKTGPKHTEGFKKRWFTLD-DRRLMYFKDPLDAFAKG-------------------------------------- 41 (103)
T ss_pred CceeEEecCCCCCCCceeEEEEEe-CCEEEEECCCCCcCcCc--------------------------------------
Confidence 589999997655689999999998 67777887653 23333
Q ss_pred cceeecccc----eeec--CCC-CCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616 180 RHTVNLLTS----TIKV--DAD-QSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA 234 (638)
Q Consensus 180 ~~~i~l~~~----~v~~--~~~-~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~ 234 (638)
.|+|..+ +|.. .+. ..+..+||+|++|+|+|+|+|+|++|+++||+||+.++.
T Consensus 42 --~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 42 --EVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTPERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred --EEEeeccccceeEeccCCccccccccceEEEEeCCeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 2444321 2221 011 223346999999999999999999999999999999874
No 27
>PHA03095 ankyrin-like protein; Provisional
Probab=99.79 E-value=5.4e-19 Score=196.10 Aligned_cols=179 Identities=22% Similarity=0.172 Sum_probs=147.5
Q ss_pred cceecccccc-cchhhhhhhcccccCccccccchhccch---------hhHHHHHhhhhc-----cccCCCccccccccc
Q 006616 458 HQIWEGVRTN-DKKAVYRHIVNFEVDVNAVYEQVSCISS---------LTLAKAMLLNEQ-----TSLERSSSSLTGNSS 522 (638)
Q Consensus 458 ~~L~~Av~~~-d~~~v~~lLl~~gaDvN~~~~~~~~~~~---------~~l~~~ll~~~~-----~~~~~~~~~l~~~~~ 522 (638)
..|+.|+... ....++++|++.|+|+|..+..+..+.+ ..+++.++..+. +..+.++++.++...
T Consensus 119 tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~ 198 (471)
T PHA03095 119 TPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSF 198 (471)
T ss_pred CHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHC
Confidence 5677777433 3456788899999999998887754443 344555554322 233455666666555
Q ss_pred CCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCH--HHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHh
Q 006616 523 DRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADI--GMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 600 (638)
Q Consensus 523 ~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~--~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~ 600 (638)
......+..|+..|++++..|..|.||||+|+..|+. .+++.|+..|+++|.+|..|+||||+|+..|+.+++++||+
T Consensus 199 ~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~ 278 (471)
T PHA03095 199 KPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIA 278 (471)
T ss_pred CCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 6667778889999999999999999999999999975 68899999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616 601 RGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 601 ~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga 638 (638)
+||+++.+|.+|.|||++|+..|+ .+++++|+++++
T Consensus 279 ~gad~n~~~~~g~tpl~~A~~~~~--~~~v~~LL~~~~ 314 (471)
T PHA03095 279 LGADINAVSSDGNTPLSLMVRNNN--GRAVRAALAKNP 314 (471)
T ss_pred cCCCCcccCCCCCCHHHHHHHhCC--HHHHHHHHHhCC
Confidence 999999999999999999999998 889999998764
No 28
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.78 E-value=1.1e-19 Score=186.65 Aligned_cols=151 Identities=24% Similarity=0.359 Sum_probs=131.6
Q ss_pred cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCC
Q 006616 458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE 537 (638)
Q Consensus 458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~ 537 (638)
..||.|+.+|.+ +|+++|+..||+||...... .+++.+++..+...++..|++.|+
T Consensus 86 ppLWaAsaAGHl-~vVk~L~~~ga~VN~tT~TN-----------------------StPLraACfDG~leivKyLvE~ga 141 (615)
T KOG0508|consen 86 PPLWAASAAGHL-EVVKLLLRRGASVNDTTRTN-----------------------STPLRAACFDGHLEIVKYLVEHGA 141 (615)
T ss_pred chhhHHhccCcH-HHHHHHHHhcCccccccccC-----------------------CccHHHHHhcchhHHHHHHHHcCC
Confidence 347766666655 56678889999999754322 345666777777888888899999
Q ss_pred CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHH
Q 006616 538 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLE 617 (638)
Q Consensus 538 ~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~ 617 (638)
|+++.|..|.|.||+||..|+.+++++|++.|||+|.++..|+|+||.|+..|+.+++++|+++|+.++. |..|.|||.
T Consensus 142 d~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~-d~~GmtPL~ 220 (615)
T KOG0508|consen 142 DPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV-DGHGMTPLL 220 (615)
T ss_pred CCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeee-cCCCCchHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999864 667999999
Q ss_pred HHHHcCCCcHHHHHHHhh
Q 006616 618 LAVESNFADSEVLAILSD 635 (638)
Q Consensus 618 ~A~~~g~~d~eiv~lLle 635 (638)
.|+..|+ .++|+.|++
T Consensus 221 ~Aa~tG~--~~iVe~L~~ 236 (615)
T KOG0508|consen 221 LAAVTGH--TDIVERLLQ 236 (615)
T ss_pred HHhhhcc--hHHHHHHhc
Confidence 9999999 779999984
No 29
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.78 E-value=1.8e-19 Score=185.09 Aligned_cols=164 Identities=18% Similarity=0.165 Sum_probs=138.4
Q ss_pred cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCC
Q 006616 458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE 537 (638)
Q Consensus 458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~ 537 (638)
..|..|+++|....|..+|..-++++.....-.. ....-...+++.+++.-+...++.+|+..|+
T Consensus 44 tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~F---------------Dge~IegappLWaAsaAGHl~vVk~L~~~ga 108 (615)
T KOG0508|consen 44 TPLLIAARNGHADVVEYLLEHCRASPEQGGSVRF---------------DGETIEGAPPLWAASAAGHLEVVKLLLRRGA 108 (615)
T ss_pred CceeeehhcCcHHHHHHHHHHhcCCccCCceEEe---------------CCcccCCCchhhHHhccCcHHHHHHHHHhcC
Confidence 4577788888777665555447888865322110 0011234555777777778888999999999
Q ss_pred CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHH
Q 006616 538 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLE 617 (638)
Q Consensus 538 ~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~ 617 (638)
+||....-..|||-.||..|++++|++|+++|+|++..|..|.|.||+||..||.+|+++|++.|||+|.++..|.|+||
T Consensus 109 ~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH 188 (615)
T KOG0508|consen 109 SVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALH 188 (615)
T ss_pred ccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHH
Confidence 99999888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcHHHHHHHhhCCC
Q 006616 618 LAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 618 ~A~~~g~~d~eiv~lLle~ga 638 (638)
.+++.|+ .+|+++|+.+||
T Consensus 189 ~caEsG~--vdivq~Ll~~ga 207 (615)
T KOG0508|consen 189 DCAESGS--VDIVQLLLKHGA 207 (615)
T ss_pred hhhhccc--HHHHHHHHhCCc
Confidence 9999999 999999999885
No 30
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.78 E-value=9.3e-19 Score=149.01 Aligned_cols=92 Identities=20% Similarity=0.450 Sum_probs=68.6
Q ss_pred EEEEEEeecCC--CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccc
Q 006616 101 RQGYLSKRSSN--LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 178 (638)
Q Consensus 101 k~GyL~Kr~~~--~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (638)
.+|||-|+++. ..|+|+||||+|+ ++.|+||+..... ..
T Consensus 2 ~~G~l~k~~g~~r~~K~WkrRwF~L~-~~~L~y~K~~~~~--------------------------------------~~ 42 (101)
T cd01264 2 IEGQLKEKKGRWRFIKRWKTRYFTLS-GAQLLFQKGKSKD--------------------------------------DP 42 (101)
T ss_pred cceEEeecCccceeeecceeEEEEEe-CCEEEEEeccCcc--------------------------------------CC
Confidence 48999999764 6789999999999 5667777665321 01
Q ss_pred ccceeecccce-eecCCCCC----CCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006616 179 ARHTVNLLTST-IKVDADQS----DLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 232 (638)
Q Consensus 179 ~~~~i~l~~~~-v~~~~~~~----~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~ 232 (638)
..+.|+|..|. |+. .++. .++|||+|++|+|+|+|+|+|++|+++||++|+.|
T Consensus 43 ~~g~IdL~~~~sVk~-~~~~~~~~~~~~~Fei~tp~rt~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 43 DDCSIDLSKIRSVKA-VAKKRRDRSLPKAFEIFTADKTYILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred CCceEEcccceEEee-ccccccccccCcEEEEEcCCceEEEEeCCHHHHHHHHHHHHhh
Confidence 12346665544 443 2221 33699999999999999999999999999999876
No 31
>PHA02795 ankyrin-like protein; Provisional
Probab=99.78 E-value=4.8e-19 Score=188.60 Aligned_cols=158 Identities=20% Similarity=0.182 Sum_probs=128.2
Q ss_pred cccceeccccc-ccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccC
Q 006616 456 VAHQIWEGVRT-NDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAG 534 (638)
Q Consensus 456 ~~~~L~~Av~~-~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~ 534 (638)
....|+.++.. ++..+++++|+++|||+|..+.. .+++.+...+...++.+|+.
T Consensus 116 ~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~~~~-------------------------t~lh~A~~~~~~eIVk~Lls 170 (437)
T PHA02795 116 VQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKIECL-------------------------NAYFRGICKKESSVVEFILN 170 (437)
T ss_pred ccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCCCCC-------------------------CHHHHHHHcCcHHHHHHHHh
Confidence 34567777762 35566778888999999875432 23444555556667777777
Q ss_pred CCCCCCcC------CCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCc
Q 006616 535 TSEGQTMD------DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAV 608 (638)
Q Consensus 535 ~~~~~~~~------d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~ 608 (638)
.|++.... +..+.|++|.|+..++.+++++|+.+||++|.+|..|.||||+|+..|+.+++++|+++||+++.+
T Consensus 171 ~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~ 250 (437)
T PHA02795 171 CGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAV 250 (437)
T ss_pred cCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence 78643222 134789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHcCC------CcHHHHHHHhhCCC
Q 006616 609 NREGKTSLELAVESNF------ADSEVLAILSDSHG 638 (638)
Q Consensus 609 d~~g~TpL~~A~~~g~------~d~eiv~lLle~ga 638 (638)
|..|.||||+|+..|+ ...+++++|+++|+
T Consensus 251 d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~ga 286 (437)
T PHA02795 251 MSNGYTCLDVAVDRGSVIARRETHLKILEILLREPL 286 (437)
T ss_pred CCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCC
Confidence 9999999999999984 13689999999885
No 32
>PHA02791 ankyrin-like protein; Provisional
Probab=99.78 E-value=1.9e-18 Score=177.16 Aligned_cols=165 Identities=12% Similarity=0.101 Sum_probs=131.7
Q ss_pred cchhhhhhhcccccCccccccchhcc-------chhhHHHHHhhhhccc-cCCCcccccccccCCcccccccccCCCCCC
Q 006616 468 DKKAVYRHIVNFEVDVNAVYEQVSCI-------SSLTLAKAMLLNEQTS-LERSSSSLTGNSSDRSSSGSLNLAGTSEGQ 539 (638)
Q Consensus 468 d~~~v~~lLl~~gaDvN~~~~~~~~~-------~~~~l~~~ll~~~~~~-~~~~~~~l~~~~~~~~~~~~~lL~~~~~~~ 539 (638)
+..+++++|++.|++ ..+..+..+ .+..++..|+..+... .....++++.+...+...++.+|+..|+++
T Consensus 10 ~~~~~~~~Lis~~a~--~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d~~TpLh~Aa~~g~~eiV~lLL~~Gadv 87 (284)
T PHA02791 10 KSKQLKSFLSSKDAF--KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGMDD 87 (284)
T ss_pred CHHHHHHHHHhCCCC--CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
Confidence 456778899888885 345545333 3445666666544321 112245555566667777888889999999
Q ss_pred CcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCC-cHHHHHHHhCCHHHHHHHHhCCCCCCCcc-CCCCCHHH
Q 006616 540 TMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGL-TPLHRCILRGKAMFAKLLLTRGADPRAVN-REGKTSLE 617 (638)
Q Consensus 540 ~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~-TpLh~A~~~g~~~~v~lLl~~gad~~~~d-~~g~TpL~ 617 (638)
+..|..|+||||+|+..|+.+++++|+.+|++++.++..|+ ||||+|+..|+.++|++|++++++. .| ..|.||||
T Consensus 88 n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh 165 (284)
T PHA02791 88 SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIH 165 (284)
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHH
Confidence 99999999999999999999999999999999999999885 8999999999999999999987653 23 35899999
Q ss_pred HHHHcCCCcHHHHHHHhhCCC
Q 006616 618 LAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 618 ~A~~~g~~d~eiv~lLle~ga 638 (638)
+|+..|+ .+++++|+++||
T Consensus 166 ~Aa~~g~--~eiv~lLL~~gA 184 (284)
T PHA02791 166 ITIKNGH--VDMMILLLDYMT 184 (284)
T ss_pred HHHHcCC--HHHHHHHHHCCC
Confidence 9999998 899999999986
No 33
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.77 E-value=1.5e-18 Score=190.58 Aligned_cols=174 Identities=22% Similarity=0.314 Sum_probs=133.5
Q ss_pred ccccceecccccccchhhhhhhcccccCccccccchhcc-------chhhHHHHHhhhhccccCCCcccccccccCCccc
Q 006616 455 SVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCI-------SSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSS 527 (638)
Q Consensus 455 ~~~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~-------~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~ 527 (638)
.....|+.|+..|+.+.| ++|++.|+|+|..+..+..+ .+..++++|+..+... ..+... .....
T Consensus 34 ~~~tpL~~A~~~g~~~iv-~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~-----~~~~~~--~~~~~ 105 (434)
T PHA02874 34 ETTTPLIDAIRSGDAKIV-ELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDT-----SILPIP--CIEKD 105 (434)
T ss_pred CCCCHHHHHHHcCCHHHH-HHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-----Ccchhc--cCCHH
Confidence 334678888888887655 66779999999877665332 3345666666543221 111111 12234
Q ss_pred ccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCC
Q 006616 528 GSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA 607 (638)
Q Consensus 528 ~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~ 607 (638)
.+..|+..|++++..|..|.||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++.
T Consensus 106 ~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~ 185 (434)
T PHA02874 106 MIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANV 185 (434)
T ss_pred HHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCC
Confidence 55667788888888888899999999999999999999999999998888899999999999999999999999999888
Q ss_pred ccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616 608 VNREGKTSLELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 608 ~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga 638 (638)
.|..|.||||+|+..|+ .+++++|++.|+
T Consensus 186 ~~~~g~tpL~~A~~~g~--~~iv~~Ll~~g~ 214 (434)
T PHA02874 186 KDNNGESPLHNAAEYGD--YACIKLLIDHGN 214 (434)
T ss_pred CCCCCCCHHHHHHHcCC--HHHHHHHHhCCC
Confidence 88889999999999887 889999988874
No 34
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.77 E-value=1.4e-18 Score=193.16 Aligned_cols=155 Identities=25% Similarity=0.283 Sum_probs=135.6
Q ss_pred cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccc-----cccCCcccccccc
Q 006616 458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTG-----NSSDRSSSGSLNL 532 (638)
Q Consensus 458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~-----~~~~~~~~~~~lL 532 (638)
..|+.|+..++.+. +++|++.|+|+|..+..+. .+++. +...+....+.+|
T Consensus 37 t~L~~A~~~~~~~i-vk~Ll~~g~~~~~~~~~~~-----------------------t~L~~~~~~~a~~~~~~~iv~~L 92 (480)
T PHA03100 37 LPLYLAKEARNIDV-VKILLDNGADINSSTKNNS-----------------------TPLHYLSNIKYNLTDVKEIVKLL 92 (480)
T ss_pred hhhhhhhccCCHHH-HHHHHHcCCCCCCccccCc-----------------------CHHHHHHHHHHHhhchHHHHHHH
Confidence 57888888877665 5666799999998765541 22233 4455566778889
Q ss_pred cCCCCCCCcCCCCCCcHHHHHH--HhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhC--CHHHHHHHHhCCCCCCCc
Q 006616 533 AGTSEGQTMDDLEGCTLLHLAC--DSADIGMLELLLQYGANINATDSRGLTPLHRCILRG--KAMFAKLLLTRGADPRAV 608 (638)
Q Consensus 533 ~~~~~~~~~~d~~G~TpLh~Aa--~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g--~~~~v~lLl~~gad~~~~ 608 (638)
+..|++++..|..|.||||+|+ ..|+.+++++|+++|++++..+..|.||||+|+..| +.+++++|+++|++++.+
T Consensus 93 l~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~ 172 (480)
T PHA03100 93 LEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAK 172 (480)
T ss_pred HHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccc
Confidence 9999999999999999999999 999999999999999999999999999999999999 999999999999999999
Q ss_pred cCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616 609 NREGKTSLELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 609 d~~g~TpL~~A~~~g~~d~eiv~lLle~ga 638 (638)
|..|.||||+|+..|+ .+++++|+++|+
T Consensus 173 d~~g~tpL~~A~~~~~--~~iv~~Ll~~ga 200 (480)
T PHA03100 173 NRYGYTPLHIAVEKGN--IDVIKFLLDNGA 200 (480)
T ss_pred cCCCCCHHHHHHHhCC--HHHHHHHHHcCC
Confidence 9999999999999997 899999999986
No 35
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.77 E-value=8.3e-19 Score=198.77 Aligned_cols=151 Identities=11% Similarity=0.109 Sum_probs=116.9
Q ss_pred ccchhhhhhhcccc-cCcccc-ccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCCCCCcCCC
Q 006616 467 NDKKAVYRHIVNFE-VDVNAV-YEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDL 544 (638)
Q Consensus 467 ~d~~~v~~lLl~~g-aDvN~~-~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~~~~~~d~ 544 (638)
+...+++++|++.| +|+|.. +..+ .++++.++........++.+|+..|++++..|.
T Consensus 152 ~v~leiVk~LLe~G~ADIN~~~d~~G---------------------~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~ 210 (764)
T PHA02716 152 GIDLDLIKYMVDVGIVNLNYVCKKTG---------------------YGILHAYLGNMYVDIDILEWLCNNGVNVNLQNN 210 (764)
T ss_pred CCCHHHHHHHHHCCCCCcccccCCCC---------------------CcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCC
Confidence 34445667888999 999987 5544 233333222233345677788889999999999
Q ss_pred CCCcHHHHHHHhCC--HHHHHHHHHcCCCCcccCCCCCcHHHHH------------------------------------
Q 006616 545 EGCTLLHLACDSAD--IGMLELLLQYGANINATDSRGLTPLHRC------------------------------------ 586 (638)
Q Consensus 545 ~G~TpLh~Aa~~g~--~~~v~~Ll~~gadvn~~d~~G~TpLh~A------------------------------------ 586 (638)
.|.||||+|+..|+ .++|++||++||++|.+|..|+||||+|
T Consensus 211 ~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~ 290 (764)
T PHA02716 211 HLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYIT 290 (764)
T ss_pred CCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHH
Confidence 99999999999885 4889999999999999999999999865
Q ss_pred -HHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616 587 -ILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 587 -~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga 638 (638)
+..|+.+++++|+++|++++.+|..|+||||+|+..+....+++++|+++||
T Consensus 291 AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GA 343 (764)
T PHA02716 291 LARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGN 343 (764)
T ss_pred HHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCC
Confidence 3447788899999999999999999999999887543333789999998886
No 36
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.77 E-value=1.9e-18 Score=192.23 Aligned_cols=179 Identities=23% Similarity=0.323 Sum_probs=147.2
Q ss_pred ccceeccc--ccccchhhhhhhcccccCccccccchhcc-------c--hhhHHHHHhhhhcccc---CCCccccccccc
Q 006616 457 AHQIWEGV--RTNDKKAVYRHIVNFEVDVNAVYEQVSCI-------S--SLTLAKAMLLNEQTSL---ERSSSSLTGNSS 522 (638)
Q Consensus 457 ~~~L~~Av--~~~d~~~v~~lLl~~gaDvN~~~~~~~~~-------~--~~~l~~~ll~~~~~~~---~~~~~~l~~~~~ 522 (638)
...|+.|+ ..++. .++++|++.|+|+|..+..+..+ . ...+++.++..+.+.. ....++++.+..
T Consensus 107 ~tpL~~A~~~~~~~~-~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~ 185 (480)
T PHA03100 107 ITPLLYAISKKSNSY-SIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVE 185 (480)
T ss_pred CchhhHHHhcccChH-HHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHH
Confidence 35678888 55554 45677779999999887766332 2 4556666665443211 123345555555
Q ss_pred CCcccccccccCCCCCCCcCCCCC------CcHHHHHHHhCC--HHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHH
Q 006616 523 DRSSSGSLNLAGTSEGQTMDDLEG------CTLLHLACDSAD--IGMLELLLQYGANINATDSRGLTPLHRCILRGKAMF 594 (638)
Q Consensus 523 ~~~~~~~~lL~~~~~~~~~~d~~G------~TpLh~Aa~~g~--~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~ 594 (638)
.+....+.+|+..|++++..+..| .||||+|+..|+ .+++++|+++|+++|.+|..|.||||+|+..|+.++
T Consensus 186 ~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~i 265 (480)
T PHA03100 186 KGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEF 265 (480)
T ss_pred hCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 667788889999999999999988 999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616 595 AKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 595 v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga 638 (638)
+++|+++|++++.+|..|.|||++|+..++ .+++++|+++|+
T Consensus 266 v~~Ll~~gad~n~~d~~g~tpl~~A~~~~~--~~iv~~Ll~~g~ 307 (480)
T PHA03100 266 VKYLLDLGANPNLVNKYGDTPLHIAILNNN--KEIFKLLLNNGP 307 (480)
T ss_pred HHHHHHcCCCCCccCCCCCcHHHHHHHhCC--HHHHHHHHhcCC
Confidence 999999999999999999999999999987 899999999986
No 37
>PHA02917 ankyrin-like protein; Provisional
Probab=99.77 E-value=2.2e-18 Score=196.20 Aligned_cols=181 Identities=13% Similarity=0.100 Sum_probs=138.8
Q ss_pred ccceeccccc--ccchhhhhhhcccccCccccccchhccchhhH-----------HHHHhhhhc-cccCCCccccccccc
Q 006616 457 AHQIWEGVRT--NDKKAVYRHIVNFEVDVNAVYEQVSCISSLTL-----------AKAMLLNEQ-TSLERSSSSLTGNSS 522 (638)
Q Consensus 457 ~~~L~~Av~~--~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l-----------~~~ll~~~~-~~~~~~~~~l~~~~~ 522 (638)
...|+.|+.. .+..+++++|++.|+|+|..+..+.++.+... +..++.... .........+..++.
T Consensus 33 ~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~ 112 (661)
T PHA02917 33 NNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSK 112 (661)
T ss_pred CcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhh
Confidence 4678876544 23456667888999999998877755544322 233333222 122222233455666
Q ss_pred CCcccccccccCCCCCCCcCCCCCCcHHHHHH--HhCCHHHHHHHHHcCCCCcccCC---CC-----------CcHHHHH
Q 006616 523 DRSSSGSLNLAGTSEGQTMDDLEGCTLLHLAC--DSADIGMLELLLQYGANINATDS---RG-----------LTPLHRC 586 (638)
Q Consensus 523 ~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa--~~g~~~~v~~Ll~~gadvn~~d~---~G-----------~TpLh~A 586 (638)
++...++.+|+..|+++|..|..|+||||.|+ ..|+.+++++||++||++|..|. .| .||||+|
T Consensus 113 ~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a 192 (661)
T PHA02917 113 NVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLY 192 (661)
T ss_pred cCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHH
Confidence 77778889999999999999999999999654 57899999999999999987653 34 5999999
Q ss_pred HH-----------hCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616 587 IL-----------RGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 587 ~~-----------~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga 638 (638)
+. .++.++|++|+++|||++.+|.+|.||||+|+..|+.+.+||++|++ ||
T Consensus 193 ~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~ 254 (661)
T PHA02917 193 IISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GI 254 (661)
T ss_pred HhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CC
Confidence 86 46899999999999999999999999999999999866799999986 53
No 38
>PHA03095 ankyrin-like protein; Provisional
Probab=99.77 E-value=1.8e-18 Score=191.83 Aligned_cols=179 Identities=20% Similarity=0.117 Sum_probs=150.3
Q ss_pred cceecccccccchhhhhhhcccccCccccccchhccchh---------hHHHHHhhhhcc-----ccCCCcccccccccC
Q 006616 458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSL---------TLAKAMLLNEQT-----SLERSSSSLTGNSSD 523 (638)
Q Consensus 458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~---------~l~~~ll~~~~~-----~~~~~~~~l~~~~~~ 523 (638)
..|+.|+..++...++++|++.|+|+|..+..+..+.+. .+++.|+..+.+ ..+.+++++++....
T Consensus 85 TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~ 164 (471)
T PHA03095 85 TPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRN 164 (471)
T ss_pred CHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 578889998887888899999999999998877444433 445555554322 334556655555555
Q ss_pred CcccccccccCCCCCCCcCCCCCCcHHHHHHHh--CCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCH--HHHHHHH
Q 006616 524 RSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDS--ADIGMLELLLQYGANINATDSRGLTPLHRCILRGKA--MFAKLLL 599 (638)
Q Consensus 524 ~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~--g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~--~~v~lLl 599 (638)
.....+.+|+..|++++..|..|.||||+|+.. ++.+++++|+++|++++.+|..|+||||+|+..|+. .++..|+
T Consensus 165 ~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll 244 (471)
T PHA03095 165 ANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLL 244 (471)
T ss_pred CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHH
Confidence 566778889999999999999999999999875 778999999999999999999999999999999875 6888999
Q ss_pred hCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616 600 TRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 600 ~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga 638 (638)
+.|++++.+|..|.||||+|+..|+ .+++++|+++||
T Consensus 245 ~~g~din~~d~~g~TpLh~A~~~~~--~~~v~~LL~~ga 281 (471)
T PHA03095 245 IAGISINARNRYGQTPLHYAAVFNN--PRACRRLIALGA 281 (471)
T ss_pred HcCCCCCCcCCCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence 9999999999999999999999998 899999999986
No 39
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.76 E-value=1.4e-18 Score=197.07 Aligned_cols=160 Identities=19% Similarity=0.153 Sum_probs=128.8
Q ss_pred cceecccccc-cchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCC
Q 006616 458 HQIWEGVRTN-DKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTS 536 (638)
Q Consensus 458 ~~L~~Av~~~-d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~ 536 (638)
..|+.|+... ...+++++|++.|+|||..+..+ .+++++++...+....++.+|+..|
T Consensus 179 TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G---------------------~TPLH~Aa~~g~~~~eIVklLLe~G 237 (764)
T PHA02716 179 GILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHL---------------------ITPLHTYLITGNVCASVIKKIIELG 237 (764)
T ss_pred cHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCC---------------------CCHHHHHHHcCCCCHHHHHHHHHcC
Confidence 3455554332 23568889999999999988766 3444544444433446788899999
Q ss_pred CCCCcCCCCCCcHHHHH-------------------------------------HHhCCHHHHHHHHHcCCCCcccCCCC
Q 006616 537 EGQTMDDLEGCTLLHLA-------------------------------------CDSADIGMLELLLQYGANINATDSRG 579 (638)
Q Consensus 537 ~~~~~~d~~G~TpLh~A-------------------------------------a~~g~~~~v~~Ll~~gadvn~~d~~G 579 (638)
+++|.+|..|+||||+| +..|+.+++++|+++|+++|.+|..|
T Consensus 238 ADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G 317 (764)
T PHA02716 238 GDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAG 317 (764)
T ss_pred CCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCC
Confidence 99999999999999975 34578899999999999999999999
Q ss_pred CcHHHHHHH--hCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHc------------CCCcHHHHHHHhhCCC
Q 006616 580 LTPLHRCIL--RGKAMFAKLLLTRGADPRAVNREGKTSLELAVES------------NFADSEVLAILSDSHG 638 (638)
Q Consensus 580 ~TpLh~A~~--~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~------------g~~d~eiv~lLle~ga 638 (638)
+||||+|+. .++.+++++|+++|++++.+|..|.||||+|+.. +....+++++|+++||
T Consensus 318 ~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GA 390 (764)
T PHA02716 318 RTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGA 390 (764)
T ss_pred CCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCC
Confidence 999999865 4689999999999999999999999999998752 1123899999999986
No 40
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.76 E-value=3.9e-18 Score=187.24 Aligned_cols=177 Identities=20% Similarity=0.275 Sum_probs=102.6
Q ss_pred ccceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccc---cCCCcccccccccCCccccccccc
Q 006616 457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTS---LERSSSSLTGNSSDRSSSGSLNLA 533 (638)
Q Consensus 457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~---~~~~~~~l~~~~~~~~~~~~~lL~ 533 (638)
...|+.|+..++.+ ++++|++.|+|++...... ....+.+.++..+.+. .....++++.+...+....+.+|+
T Consensus 69 ~t~L~~A~~~~~~~-iv~~Ll~~g~~~~~~~~~~---~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll 144 (434)
T PHA02874 69 PHPLLTAIKIGAHD-IIKLLIDNGVDTSILPIPC---IEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLF 144 (434)
T ss_pred CCHHHHHHHcCCHH-HHHHHHHCCCCCCcchhcc---CCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHH
Confidence 35788888887765 4566667777765422111 1223333333322111 011222333333444445555666
Q ss_pred CCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCC---------
Q 006616 534 GTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD--------- 604 (638)
Q Consensus 534 ~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad--------- 604 (638)
..|++++..|..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++
T Consensus 145 ~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~ 224 (434)
T PHA02874 145 EYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGF 224 (434)
T ss_pred hCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666654
Q ss_pred ----------------------CCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616 605 ----------------------PRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 605 ----------------------~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga 638 (638)
++.+|.+|.||||+|+..+. +.+++++|+++||
T Consensus 225 TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A~~~~~-~~~iv~~Ll~~ga 279 (434)
T PHA02874 225 TPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAINPPC-DIDIIDILLYHKA 279 (434)
T ss_pred CHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHHHHhcCC-cHHHHHHHHHCcC
Confidence 44455566666666666542 3567777777664
No 41
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.76 E-value=2.9e-18 Score=147.51 Aligned_cols=92 Identities=24% Similarity=0.456 Sum_probs=70.7
Q ss_pred EEEEEEeecCC--------CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCC
Q 006616 101 RQGYLSKRSSN--------LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGV 172 (638)
Q Consensus 101 k~GyL~Kr~~~--------~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 172 (638)
++|||+|..++ ..|+|+||||||+++++||||.....
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~----------------------------------- 45 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMP----------------------------------- 45 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCC-----------------------------------
Confidence 47999999765 25799999999998899999865421
Q ss_pred CCccccccceeecccceeecCCCC-CCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHH
Q 006616 173 HDEKSAARHTVNLLTSTIKVDADQ-SDLRFCFRIISPTKNYTLQAESALDQMDWIEKIT 230 (638)
Q Consensus 173 ~~~~~~~~~~i~l~~~~v~~~~~~-~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~ 230 (638)
...+.+.|+|..|......++ ..+.|||.|++|+|+|+|.|+|++|+++||++|.
T Consensus 46 ---~~~p~G~IdL~~~~~V~~~~~~~~~~~~f~I~tp~R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 46 ---TTLPQGTIDMNQCTDVVDAEARTGQKFSICILTPDKEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred ---CcccceEEEccceEEEeecccccCCccEEEEECCCceEEEEeCCHHHHHHHHHHHH
Confidence 122345577776655443322 3446999999999999999999999999999986
No 42
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.76 E-value=2.2e-18 Score=191.54 Aligned_cols=161 Identities=24% Similarity=0.252 Sum_probs=82.4
Q ss_pred hhhhhhcccccCccccccc-hhccc-------hhhHHHHHhhhhcccc---CCCcccccccccCCcccccccccCCCCCC
Q 006616 471 AVYRHIVNFEVDVNAVYEQ-VSCIS-------SLTLAKAMLLNEQTSL---ERSSSSLTGNSSDRSSSGSLNLAGTSEGQ 539 (638)
Q Consensus 471 ~v~~lLl~~gaDvN~~~~~-~~~~~-------~~~l~~~ll~~~~~~~---~~~~~~l~~~~~~~~~~~~~lL~~~~~~~ 539 (638)
+++++|++.|+|+|..+.. +..+. +..+++.|+..+.+.. ....++++.+...+...++.+|+..|+++
T Consensus 148 ~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~i 227 (477)
T PHA02878 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAST 227 (477)
T ss_pred HHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence 4788999999999998876 52222 2233334433222110 11122233333333344444555555555
Q ss_pred CcCCCCCCcHHHHHHHh-CCHHHHHHHHHcCCCCcccCC-CCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHH
Q 006616 540 TMDDLEGCTLLHLACDS-ADIGMLELLLQYGANINATDS-RGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLE 617 (638)
Q Consensus 540 ~~~d~~G~TpLh~Aa~~-g~~~~v~~Ll~~gadvn~~d~-~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~ 617 (638)
+..|..|.||||+|+.. ++.+++++|+++|+++|.++. .|.||||+| .++.+++++|+++|||++..|..|.||||
T Consensus 228 n~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~ 305 (477)
T PHA02878 228 DARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLS 305 (477)
T ss_pred CCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence 55555555555555543 455555555555555555543 455555555 34455555555555555555555555555
Q ss_pred HHHHcCCCcHHHHHHHh
Q 006616 618 LAVESNFADSEVLAILS 634 (638)
Q Consensus 618 ~A~~~g~~d~eiv~lLl 634 (638)
+|+..+. +.+++++|+
T Consensus 306 ~A~~~~~-~~~~~~~li 321 (477)
T PHA02878 306 SAVKQYL-CINIGRILI 321 (477)
T ss_pred HHHHHcC-ccchHHHHH
Confidence 5554331 234444443
No 43
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.76 E-value=2.6e-18 Score=149.92 Aligned_cols=95 Identities=21% Similarity=0.379 Sum_probs=67.9
Q ss_pred eEEEEEEeecCC----CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCc
Q 006616 100 IRQGYLSKRSSN----LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE 175 (638)
Q Consensus 100 ~k~GyL~Kr~~~----~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 175 (638)
||+|||+||+.+ .+++|++|||||+ ++.|+||+.+.+.
T Consensus 1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~-~~~L~Yyk~~~~~------------------------------------- 42 (106)
T cd01238 1 ILESILVKRSQQKKKTSPLNYKERLFVLT-KSKLSYYEGDFEK------------------------------------- 42 (106)
T ss_pred CcceeeeeeccCCCCCCCCCceeEEEEEc-CCEEEEECCCccc-------------------------------------
Confidence 589999999754 2359999999997 7788888775431
Q ss_pred cccccceeecccceee-cCCCC------CCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006616 176 KSAARHTVNLLTSTIK-VDADQ------SDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 232 (638)
Q Consensus 176 ~~~~~~~i~l~~~~v~-~~~~~------~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~ 232 (638)
...+.+.|+|..+..- ...+. ..+.|||+|++++++|+|+|+|++|+++||++|+++
T Consensus 43 ~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~~r~~yl~A~s~~er~~WI~ai~~~ 106 (106)
T cd01238 43 RGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHDEGTLYVFAPTEELRKRWIKALKQV 106 (106)
T ss_pred ccCcceeEECCcceEEEEecCCcCcccccccCccEEEEeCCCeEEEEcCCHHHHHHHHHHHHhC
Confidence 1122334555443221 11111 135799999999999999999999999999999863
No 44
>PHA02946 ankyin-like protein; Provisional
Probab=99.76 E-value=2.3e-18 Score=188.74 Aligned_cols=178 Identities=16% Similarity=0.167 Sum_probs=139.8
Q ss_pred ccceecccccccchhhhhhhcccccCccccccchhccchh---------hHHHHHhhhhcccc----CCCcccccccccC
Q 006616 457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSL---------TLAKAMLLNEQTSL----ERSSSSLTGNSSD 523 (638)
Q Consensus 457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~---------~l~~~ll~~~~~~~----~~~~~~l~~~~~~ 523 (638)
...|+.|+..++. +++++|++.|+|+|.++..+..+.++ .+++.|+..+.+.. ....++++++. .
T Consensus 73 ~TpLh~Aa~~g~~-eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~-~ 150 (446)
T PHA02946 73 NYPLHIASKINNN-RIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACT-D 150 (446)
T ss_pred CCHHHHHHHcCCH-HHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHHHHH-C
Confidence 3578888887765 56678889999999998888655543 33444554332211 11222333333 3
Q ss_pred CcccccccccCCCCCCCcCCCCCCcHHHHHHHhCC--HHHHHHHHHcCCCCcccCCCCCcHHHHHHHhC--CHHHHHHHH
Q 006616 524 RSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSAD--IGMLELLLQYGANINATDSRGLTPLHRCILRG--KAMFAKLLL 599 (638)
Q Consensus 524 ~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~--~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g--~~~~v~lLl 599 (638)
+...++.+|+..|++++..|..|+||||+|+..++ .+++++|+++|+++|.+|..|+||||+|+..+ +.+++++|+
T Consensus 151 ~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl 230 (446)
T PHA02946 151 PSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLL 230 (446)
T ss_pred CChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHH
Confidence 44566777889999999999999999999987654 68999999999999999999999999999986 789999998
Q ss_pred hCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616 600 TRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 600 ~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga 638 (638)
. |++++.+|..|.||||+|+..++ ..+++++|+.+|+
T Consensus 231 ~-gadin~~d~~G~TpLh~A~~~~~-~~~~~~~Ll~~g~ 267 (446)
T PHA02946 231 P-STDVNKQNKFGDSPLTLLIKTLS-PAHLINKLLSTSN 267 (446)
T ss_pred c-CCCCCCCCCCCCCHHHHHHHhCC-hHHHHHHHHhCCC
Confidence 5 89999999999999999999986 3479999999875
No 45
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.76 E-value=1.9e-18 Score=164.07 Aligned_cols=107 Identities=23% Similarity=0.252 Sum_probs=98.6
Q ss_pred ccccCCCCCCCcCCCCCCcHHHHHHHhCCHH---HHHHHHHcCCCCcccC-CCCCcHHHHHHHhCCHHHHHHHHh-CCCC
Q 006616 530 LNLAGTSEGQTMDDLEGCTLLHLACDSADIG---MLELLLQYGANINATD-SRGLTPLHRCILRGKAMFAKLLLT-RGAD 604 (638)
Q Consensus 530 ~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~---~v~~Ll~~gadvn~~d-~~G~TpLh~A~~~g~~~~v~lLl~-~gad 604 (638)
.+|...+++++..|..|+||||+|+..|+.+ ++++|+.+|+++|.+| ..|.||||+|+..|+.+++++|+. .|++
T Consensus 41 ~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad 120 (166)
T PHA02743 41 PFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVN 120 (166)
T ss_pred HHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCC
Confidence 3566788899999999999999999998865 4899999999999998 489999999999999999999995 7999
Q ss_pred CCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616 605 PRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 605 ~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga 638 (638)
++.+|..|.||||+|+..++ .+++++|+++||
T Consensus 121 ~~~~d~~g~tpL~~A~~~~~--~~iv~~Ll~~ga 152 (166)
T PHA02743 121 LGAINYQHETAYHIAYKMRD--RRMMEILRANGA 152 (166)
T ss_pred ccCcCCCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence 99999999999999999988 899999999986
No 46
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.76 E-value=5.2e-18 Score=145.05 Aligned_cols=90 Identities=24% Similarity=0.380 Sum_probs=71.8
Q ss_pred EEEEEeecCC-CCCCceeeEEEEec-CceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccccc
Q 006616 102 QGYLSKRSSN-LRGDWKRRFFVLDS-RGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA 179 (638)
Q Consensus 102 ~GyL~Kr~~~-~~~~WkrRwfvL~~-~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (638)
+|||.|+++. ..++|+||||||++ .+.||||+.+.+ ..+
T Consensus 2 ~GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d---------------------------------------~~p 42 (95)
T cd01265 2 CGYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQD---------------------------------------AKP 42 (95)
T ss_pred cccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCCc---------------------------------------ccc
Confidence 6999999753 47899999999985 357999887532 224
Q ss_pred cceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006616 180 RHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 232 (638)
Q Consensus 180 ~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~ 232 (638)
.+.|+|..+.+...++ +++++|+|++++|+|+|+|+|++||++||++|+.+
T Consensus 43 ~G~I~L~~~~~~~~~~--~~~~~F~i~t~~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 43 LGRVDLSGAAFTYDPR--EEKGRFEIHSNNEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred cceEECCccEEEcCCC--CCCCEEEEEcCCcEEEEECCCHHHHHHHHHHHHhh
Confidence 4567887776654333 34789999999999999999999999999999875
No 47
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.75 E-value=2.3e-18 Score=169.80 Aligned_cols=145 Identities=17% Similarity=0.184 Sum_probs=118.9
Q ss_pred cceecccccc-cchhhhhhhcccccCcccccc-chhccchhhHHHHHhhhhccccCCCcccccccc-cCCcccccccccC
Q 006616 458 HQIWEGVRTN-DKKAVYRHIVNFEVDVNAVYE-QVSCISSLTLAKAMLLNEQTSLERSSSSLTGNS-SDRSSSGSLNLAG 534 (638)
Q Consensus 458 ~~L~~Av~~~-d~~~v~~lLl~~gaDvN~~~~-~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~-~~~~~~~~~lL~~ 534 (638)
..|+.|+..+ ...+++++|++.|+|+|..+. .+ .+++++++.. ......++.+|+.
T Consensus 53 TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g---------------------~TpLh~a~~~~~~~~~eiv~~Ll~ 111 (209)
T PHA02859 53 TPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNN---------------------LSALHHYLSFNKNVEPEILKILID 111 (209)
T ss_pred CHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCC---------------------CCHHHHHHHhCccccHHHHHHHHH
Confidence 5677777654 356778899999999998763 33 2333333222 2234567778889
Q ss_pred CCCCCCcCCCCCCcHHHHHHH--hCCHHHHHHHHHcCCCCcccCCCCCcHHHH-HHHhCCHHHHHHHHhCCCCCCCccCC
Q 006616 535 TSEGQTMDDLEGCTLLHLACD--SADIGMLELLLQYGANINATDSRGLTPLHR-CILRGKAMFAKLLLTRGADPRAVNRE 611 (638)
Q Consensus 535 ~~~~~~~~d~~G~TpLh~Aa~--~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~-A~~~g~~~~v~lLl~~gad~~~~d~~ 611 (638)
.|++++..|.+|.||||+|+. .++.+++++|+++|++++.+|..|.||||. |+..++.+++++|+++|++++.+|..
T Consensus 112 ~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~ 191 (209)
T PHA02859 112 SGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKS 191 (209)
T ss_pred CCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCC
Confidence 999999999999999999876 468999999999999999999999999995 56778999999999999999999999
Q ss_pred CCCHHHHHHHcC
Q 006616 612 GKTSLELAVESN 623 (638)
Q Consensus 612 g~TpL~~A~~~g 623 (638)
|.|||++|...+
T Consensus 192 g~tpl~la~~~~ 203 (209)
T PHA02859 192 GYNCYDLIKFRN 203 (209)
T ss_pred CCCHHHHHhhhh
Confidence 999999998765
No 48
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.75 E-value=7.6e-18 Score=142.49 Aligned_cols=88 Identities=27% Similarity=0.481 Sum_probs=71.2
Q ss_pred EEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccccccc
Q 006616 102 QGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARH 181 (638)
Q Consensus 102 ~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 181 (638)
+|||.|+ ++..++|++|||||+ +|.|+||+++.+. ...+++
T Consensus 2 ~G~L~K~-~~~~k~Wk~RwFvL~-~g~L~Yyk~~~~~-------------------------------------~~~~~G 42 (91)
T cd01247 2 NGVLSKW-TNYINGWQDRYFVLK-EGNLSYYKSEAEK-------------------------------------SHGCRG 42 (91)
T ss_pred ceEEEEe-ccccCCCceEEEEEE-CCEEEEEecCccC-------------------------------------cCCCcE
Confidence 7999999 557889999999997 7888888876431 113456
Q ss_pred eeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHH
Q 006616 182 TVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITG 231 (638)
Q Consensus 182 ~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~ 231 (638)
.|+|..|.+...+ .++++|+|.++. ++|+|+|+|++|+++||+||+.
T Consensus 43 ~I~L~~~~i~~~~---~~~~~F~i~~~~~r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 43 SIFLKKAIIAAHE---FDENRFDISVNENVVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred EEECcccEEEcCC---CCCCEEEEEeCCCeEEEEEeCCHHHHHHHHHHHhh
Confidence 7899988888532 236899997666 9999999999999999999975
No 49
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.75 E-value=3.5e-18 Score=190.62 Aligned_cols=168 Identities=19% Similarity=0.224 Sum_probs=130.8
Q ss_pred hhhhhhhcccccCccccccchhcc---------chhhHHHHHhhhhcccc--CCCcccccccccCC------cccccccc
Q 006616 470 KAVYRHIVNFEVDVNAVYEQVSCI---------SSLTLAKAMLLNEQTSL--ERSSSSLTGNSSDR------SSSGSLNL 532 (638)
Q Consensus 470 ~~v~~lLl~~gaDvN~~~~~~~~~---------~~~~l~~~ll~~~~~~~--~~~~~~l~~~~~~~------~~~~~~lL 532 (638)
.+++++|++.|+|||..+ .+... .+..+++.|+..+.+.. +...++++++..+. ...++.+|
T Consensus 16 ~~~v~~LL~~GadvN~~~-~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~~~~tpL~~a~~~~~~~~~~~~~iv~~L 94 (494)
T PHA02989 16 KNALEFLLRTGFDVNEEY-RGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKGYIETPLCAVLRNREITSNKIKKIVKLL 94 (494)
T ss_pred HHHHHHHHHcCCCccccc-CCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCCCCCCcHHHHHhccCcchhhHHHHHHHH
Confidence 456778889999999873 23221 13467777776654422 11233344433322 23467889
Q ss_pred cCCCCCCCcCCCCCCcHHHHHHHh---CCHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHh--CCHHHHHHHHhCCCCCC
Q 006616 533 AGTSEGQTMDDLEGCTLLHLACDS---ADIGMLELLLQYGANI-NATDSRGLTPLHRCILR--GKAMFAKLLLTRGADPR 606 (638)
Q Consensus 533 ~~~~~~~~~~d~~G~TpLh~Aa~~---g~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~--g~~~~v~lLl~~gad~~ 606 (638)
+..|+++|..|..|.||||.|+.. ++.+++++|+++|||+ +.+|..|+||||+|+.. ++.++|++|+++|++++
T Consensus 95 l~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~ 174 (494)
T PHA02989 95 LKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLF 174 (494)
T ss_pred HHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc
Confidence 999999999999999999988765 6799999999999999 89999999999998764 68999999999999999
Q ss_pred C-ccCCCCCHHHHHHHcCC--CcHHHHHHHhhCCC
Q 006616 607 A-VNREGKTSLELAVESNF--ADSEVLAILSDSHG 638 (638)
Q Consensus 607 ~-~d~~g~TpL~~A~~~g~--~d~eiv~lLle~ga 638 (638)
. .+..|.||||+|+..+. .+.+++++|+++||
T Consensus 175 ~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga 209 (494)
T PHA02989 175 EKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGV 209 (494)
T ss_pred ccccccCCChHHHHHhcccccccHHHHHHHHhCCC
Confidence 8 68899999999988752 34899999999986
No 50
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.75 E-value=4.8e-18 Score=196.94 Aligned_cols=180 Identities=21% Similarity=0.234 Sum_probs=135.2
Q ss_pred ccceecccccccchhhhhhhcccccCccccccchhccchh--------hHHHHHhhhhc-----cccCCCcccccccccC
Q 006616 457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSL--------TLAKAMLLNEQ-----TSLERSSSSLTGNSSD 523 (638)
Q Consensus 457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~--------~l~~~ll~~~~-----~~~~~~~~~l~~~~~~ 523 (638)
...|+.|+..++...++++|++.|+|+|..+..+..+.++ ..++.++..+. +..+.+++++++ ..+
T Consensus 274 ~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~-~~~ 352 (682)
T PHA02876 274 NTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQAS-TLD 352 (682)
T ss_pred CCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHH-HhC
Confidence 3567888888887778888888888888877766444332 22333333221 122334444333 234
Q ss_pred CcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCC-HHHHHHHHhCC
Q 006616 524 RSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGK-AMFAKLLLTRG 602 (638)
Q Consensus 524 ~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~-~~~v~lLl~~g 602 (638)
....++.+|+..|++++..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++ ..++++|+++|
T Consensus 353 ~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~g 432 (682)
T PHA02876 353 RNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRG 432 (682)
T ss_pred CcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCC
Confidence 44556777888899999999999999999999999999999999999999999999999999987665 46788999999
Q ss_pred CCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616 603 ADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 603 ad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga 638 (638)
++++.+|..|.||||+|+..+. ..+++++|+++||
T Consensus 433 adin~~d~~G~TpLh~Aa~~~~-~~~iv~lLl~~Ga 467 (682)
T PHA02876 433 ANVNSKNKDLSTPLHYACKKNC-KLDVIEMLLDNGA 467 (682)
T ss_pred CCCCcCCCCCChHHHHHHHhCC-cHHHHHHHHHCCC
Confidence 9999999999999999988763 3789999998886
No 51
>PHA02798 ankyrin-like protein; Provisional
Probab=99.75 E-value=3.8e-18 Score=190.09 Aligned_cols=179 Identities=16% Similarity=0.126 Sum_probs=135.6
Q ss_pred cceeccccc----ccchhhhhhhcccccCccccccchhccch----------hhHHHHHhhhhcc-----ccCCCccccc
Q 006616 458 HQIWEGVRT----NDKKAVYRHIVNFEVDVNAVYEQVSCISS----------LTLAKAMLLNEQT-----SLERSSSSLT 518 (638)
Q Consensus 458 ~~L~~Av~~----~d~~~v~~lLl~~gaDvN~~~~~~~~~~~----------~~l~~~ll~~~~~-----~~~~~~~~l~ 518 (638)
..|+.++.. .....++++|++.|+|+|..+..+.++.+ ..++++|+..+.+ ..+.++++++
T Consensus 73 TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a 152 (489)
T PHA02798 73 TPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVY 152 (489)
T ss_pred ChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHH
Confidence 445555432 23467888999999999998887744433 3455555554433 2234455444
Q ss_pred ccccC-CcccccccccCCCCCCCcCC-CCCCcHHHHHHHh----CCHHHHHHHHHcCCC---------------------
Q 006616 519 GNSSD-RSSSGSLNLAGTSEGQTMDD-LEGCTLLHLACDS----ADIGMLELLLQYGAN--------------------- 571 (638)
Q Consensus 519 ~~~~~-~~~~~~~lL~~~~~~~~~~d-~~G~TpLh~Aa~~----g~~~~v~~Ll~~gad--------------------- 571 (638)
+.... ....++.+|+..|++++..+ ..|.||||.++.. ++.+++++|+++|++
T Consensus 153 ~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~ 232 (489)
T PHA02798 153 LQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLY 232 (489)
T ss_pred HHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHh
Confidence 44433 33667788889999999875 5789999988764 368888888887764
Q ss_pred ------------------CcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHH
Q 006616 572 ------------------INATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAIL 633 (638)
Q Consensus 572 ------------------vn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lL 633 (638)
+|.+|..|+||||+|+..|+.+++++||++|||++.+|..|.|||++|+..++ .++++.|
T Consensus 233 ~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~--~~iv~~l 310 (489)
T PHA02798 233 DNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENES--KFIFNSI 310 (489)
T ss_pred hcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCc--HHHHHHH
Confidence 44567789999999999999999999999999999999999999999999987 8899999
Q ss_pred hhCCC
Q 006616 634 SDSHG 638 (638)
Q Consensus 634 le~ga 638 (638)
+++|+
T Consensus 311 L~~~~ 315 (489)
T PHA02798 311 LNKKP 315 (489)
T ss_pred HccCC
Confidence 98874
No 52
>PHA02946 ankyin-like protein; Provisional
Probab=99.74 E-value=6.7e-18 Score=185.03 Aligned_cols=168 Identities=14% Similarity=0.216 Sum_probs=136.1
Q ss_pred ccchhhhhhhcccccCccccccchhccch-------hhHHHHHhhhhcc-----ccCCCcccccccccCCcccccccccC
Q 006616 467 NDKKAVYRHIVNFEVDVNAVYEQVSCISS-------LTLAKAMLLNEQT-----SLERSSSSLTGNSSDRSSSGSLNLAG 534 (638)
Q Consensus 467 ~d~~~v~~lLl~~gaDvN~~~~~~~~~~~-------~~l~~~ll~~~~~-----~~~~~~~~l~~~~~~~~~~~~~lL~~ 534 (638)
+...+++++|++.|+|||..+..+.++.+ ..+++.|+..+.+ ..+.+++++++.........+.+|+.
T Consensus 49 ~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~ 128 (446)
T PHA02946 49 GLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQ 128 (446)
T ss_pred CCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHH
Confidence 33456788888999999999988855544 4666777665432 34456666555444444566778899
Q ss_pred CCCCCCc-CCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhC--CHHHHHHHHhCCCCCCCccCC
Q 006616 535 TSEGQTM-DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRG--KAMFAKLLLTRGADPRAVNRE 611 (638)
Q Consensus 535 ~~~~~~~-~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g--~~~~v~lLl~~gad~~~~d~~ 611 (638)
.|++++. .|.+|.|||| ||..|+.+++++|++.|++++.+|..|+||||+|+..+ +.+++++|+++|++++.+|.+
T Consensus 129 ~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~ 207 (446)
T PHA02946 129 YGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHD 207 (446)
T ss_pred cCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCC
Confidence 9999995 6889999998 66679999999999999999999999999999998765 468999999999999999999
Q ss_pred CCCHHHHHHHcCCCcHHHHHHHhh
Q 006616 612 GKTSLELAVESNFADSEVLAILSD 635 (638)
Q Consensus 612 g~TpL~~A~~~g~~d~eiv~lLle 635 (638)
|.||||+|+..+..+.+++++|++
T Consensus 208 G~TpLH~Aa~~~~~~~~iv~lLl~ 231 (446)
T PHA02946 208 GNTPLHIVCSKTVKNVDIINLLLP 231 (446)
T ss_pred CCCHHHHHHHcCCCcHHHHHHHHc
Confidence 999999999987555889999985
No 53
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.73 E-value=9.2e-18 Score=197.67 Aligned_cols=155 Identities=15% Similarity=0.182 Sum_probs=134.1
Q ss_pred cccceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCC
Q 006616 456 VAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGT 535 (638)
Q Consensus 456 ~~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~ 535 (638)
....|+.|+..|+...+ +.|++.|+|+|..|..+ .++++.++..+...++.+|+..
T Consensus 525 ~~~~L~~Aa~~g~~~~l-~~Ll~~G~d~n~~d~~G-----------------------~TpLh~Aa~~g~~~~v~~Ll~~ 580 (823)
T PLN03192 525 MASNLLTVASTGNAALL-EELLKAKLDPDIGDSKG-----------------------RTPLHIAASKGYEDCVLVLLKH 580 (823)
T ss_pred chhHHHHHHHcCCHHHH-HHHHHCCCCCCCCCCCC-----------------------CCHHHHHHHcChHHHHHHHHhc
Confidence 34678899998887655 55568999999988766 2334444455666777888999
Q ss_pred CCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCH
Q 006616 536 SEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTS 615 (638)
Q Consensus 536 ~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~Tp 615 (638)
|++++..|.+|.||||+|+..|+.+++++|+..++..+. ..|.++||.|+..|+.+++++|+++|+|++.+|.+|.||
T Consensus 581 gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~Tp 658 (823)
T PLN03192 581 ACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATA 658 (823)
T ss_pred CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 999999999999999999999999999999998877654 457799999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcHHHHHHHhhCCC
Q 006616 616 LELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 616 L~~A~~~g~~d~eiv~lLle~ga 638 (638)
||+|+..|+ .+++++|+++||
T Consensus 659 Lh~A~~~g~--~~iv~~Ll~~GA 679 (823)
T PLN03192 659 LQVAMAEDH--VDMVRLLIMNGA 679 (823)
T ss_pred HHHHHHCCc--HHHHHHHHHcCC
Confidence 999999998 899999999986
No 54
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.73 E-value=6.2e-18 Score=195.07 Aligned_cols=179 Identities=23% Similarity=0.333 Sum_probs=144.2
Q ss_pred cceecccccccchhhhhhhcccccCccccccchhccchh-------hHHHHHhhhh---ccccCCCcccccccccCCccc
Q 006616 458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSL-------TLAKAMLLNE---QTSLERSSSSLTGNSSDRSSS 527 (638)
Q Consensus 458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~-------~l~~~ll~~~---~~~~~~~~~~l~~~~~~~~~~ 527 (638)
..++.|+..+...++..++...|+|+|.....+..+.++ .....++... ........+.++.+.......
T Consensus 442 T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~ 521 (1143)
T KOG4177|consen 442 TPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVK 521 (1143)
T ss_pred ChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHH
Confidence 456677777767777777788899999988877554433 3444443322 111122233444444444555
Q ss_pred ccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCC
Q 006616 528 GSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA 607 (638)
Q Consensus 528 ~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~ 607 (638)
+...+...|++++.++.+|.||||+||..|++.+|++||++|||++++|+.|+||||.||..|+.+|+.+|+++||++|.
T Consensus 522 ~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna 601 (1143)
T KOG4177|consen 522 VAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNA 601 (1143)
T ss_pred HHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCc
Confidence 66678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616 608 VNREGKTSLELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 608 ~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga 638 (638)
.|.+|.|||++|+..|+ .+++++|+..++
T Consensus 602 ~d~~g~TpL~iA~~lg~--~~~~k~l~~~~~ 630 (1143)
T KOG4177|consen 602 ADLDGFTPLHIAVRLGY--LSVVKLLKVVTA 630 (1143)
T ss_pred ccccCcchhHHHHHhcc--cchhhHHHhccC
Confidence 99999999999999999 789999998764
No 55
>PHA02798 ankyrin-like protein; Provisional
Probab=99.72 E-value=1.4e-17 Score=185.67 Aligned_cols=152 Identities=19% Similarity=0.231 Sum_probs=124.9
Q ss_pred chhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCCCCCcCCCCCCc
Q 006616 469 KKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCT 548 (638)
Q Consensus 469 ~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~T 548 (638)
..+++++|++.|+|||..+..+..+.+..+.. .........++.+|+..|+++|..|..|+|
T Consensus 50 ~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n------------------~~~~~~~~~iv~~Ll~~GadiN~~d~~G~T 111 (489)
T PHA02798 50 STDIVKLFINLGANVNGLDNEYSTPLCTILSN------------------IKDYKHMLDIVKILIENGADINKKNSDGET 111 (489)
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCChHHHHHHh------------------HHhHHhHHHHHHHHHHCCCCCCCCCCCcCc
Confidence 56788999999999999887773222211100 000112356778899999999999999999
Q ss_pred HHHHHHHhC---CHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCC---HHHHHHHHhCCCCCCCcc-CCCCCHHHHHHH
Q 006616 549 LLHLACDSA---DIGMLELLLQYGANINATDSRGLTPLHRCILRGK---AMFAKLLLTRGADPRAVN-REGKTSLELAVE 621 (638)
Q Consensus 549 pLh~Aa~~g---~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~---~~~v~lLl~~gad~~~~d-~~g~TpL~~A~~ 621 (638)
|||+|+..+ +.+++++|+++|+++|.+|..|.||||+|+..++ .+++++|+++|++++..+ ..|.||||.++.
T Consensus 112 pLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~ 191 (489)
T PHA02798 112 PLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFK 191 (489)
T ss_pred HHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHH
Confidence 999999876 6899999999999999999999999999999998 999999999999999885 578999999987
Q ss_pred cC--CCcHHHHHHHhhCCC
Q 006616 622 SN--FADSEVLAILSDSHG 638 (638)
Q Consensus 622 ~g--~~d~eiv~lLle~ga 638 (638)
.+ ..+.+++++|+++|+
T Consensus 192 ~~~~~~~~~ivk~Li~~Ga 210 (489)
T PHA02798 192 YNIDRIDADILKLFVDNGF 210 (489)
T ss_pred hccccCCHHHHHHHHHCCC
Confidence 54 235899999999985
No 56
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.71 E-value=6.5e-17 Score=139.01 Aligned_cols=91 Identities=27% Similarity=0.554 Sum_probs=71.1
Q ss_pred EEEEEEeecCC---CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616 101 RQGYLSKRSSN---LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS 177 (638)
Q Consensus 101 k~GyL~Kr~~~---~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 177 (638)
++|||+|+++. ..+.|+||||||. ++.|+||+.+.+ .
T Consensus 2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~-~~~L~yyk~~~~---------------------------------------~ 41 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKWARRWFVLK-GTTLYWYRSKQD---------------------------------------E 41 (96)
T ss_pred ceeEEEEecCCCCccccCceeEEEEEE-CCEEEEECCCCC---------------------------------------C
Confidence 58999999643 3458999999999 577777776532 1
Q ss_pred cccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHH
Q 006616 178 AARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGV 232 (638)
Q Consensus 178 ~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~ 232 (638)
.+.+.|.|..++|... .+..++|||.|.+|+ ++|+|+|+|++|+.+||.+|++|
T Consensus 42 ~~~~~I~L~~~~v~~~-~~~~k~~~F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 42 KAEGLIFLSGFTIESA-KEVKKKYAFKVCHPVYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred ccceEEEccCCEEEEc-hhcCCceEEEECCCCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 1234577777777653 234588999999999 99999999999999999999864
No 57
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.70 E-value=8.5e-17 Score=137.53 Aligned_cols=93 Identities=41% Similarity=0.740 Sum_probs=72.0
Q ss_pred EEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccccc
Q 006616 101 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 180 (638)
Q Consensus 101 k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 180 (638)
|+|||.|+++...+.|++|||+|. ++.|+||...... ...+.
T Consensus 1 k~G~L~kk~~~~~~~W~kr~~~L~-~~~l~~y~~~~~~-------------------------------------~~~~~ 42 (94)
T cd01250 1 KQGYLYKRSSKSNKEWKKRWFVLK-NGQLTYHHRLKDY-------------------------------------DNAHV 42 (94)
T ss_pred CcceEEEECCCcCCCceEEEEEEe-CCeEEEEcCCccc-------------------------------------ccccc
Confidence 589999997655678999999998 6777777664321 01122
Q ss_pred ceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHH
Q 006616 181 HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITG 231 (638)
Q Consensus 181 ~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~ 231 (638)
..|+|..+++....+..++++||.|++++++|+|+|+|++|+++||.||++
T Consensus 43 ~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 43 KEIDLRRCTVRHNGKQPDRRFCFEVISPTKTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred eEEeccceEEecCccccCCceEEEEEcCCcEEEEECCCHHHHHHHHHHHhc
Confidence 347777777776544434789999999999999999999999999999975
No 58
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.70 E-value=8.6e-17 Score=137.92 Aligned_cols=94 Identities=21% Similarity=0.364 Sum_probs=70.3
Q ss_pred eeEEEEEEeecCCCCCCceeeEEEEecCc-----eEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCC
Q 006616 99 TIRQGYLSKRSSNLRGDWKRRFFVLDSRG-----MLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVH 173 (638)
Q Consensus 99 ~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~-----~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 173 (638)
++|+|||.|+ ++|+||||||+.+. .|.||++.......
T Consensus 2 v~k~GyL~K~-----K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~-------------------------------- 44 (101)
T cd01257 2 VRKSGYLRKQ-----KSMHKRFFVLRAESSGGPARLEYYENEKKFLQK-------------------------------- 44 (101)
T ss_pred ccEEEEEeEe-----cCcEeEEEEEecCCCCCCceEEEECChhhcccc--------------------------------
Confidence 4699999998 68999999999642 78888876431100
Q ss_pred CccccccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHH
Q 006616 174 DEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITG 231 (638)
Q Consensus 174 ~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~ 231 (638)
...+.+.|+|..|..-....+..++|+|.|.||+++|+|+|+|++|+++||.+|..
T Consensus 45 --~~~p~~vI~L~~c~~v~~~~d~k~~~~f~i~t~dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 45 --GSAPKRVIPLESCFNINKRADAKHRHLIALYTRDEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred --CCCceEEEEccceEEEeeccccccCeEEEEEeCCceEEEEeCCHHHHHHHHHHHhh
Confidence 02244567887776443233334569999999999999999999999999999864
No 59
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.70 E-value=2.8e-17 Score=154.01 Aligned_cols=171 Identities=17% Similarity=0.106 Sum_probs=124.0
Q ss_pred eecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhh----------hhccccCCCcccccccccCCccccc
Q 006616 460 IWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLL----------NEQTSLERSSSSLTGNSSDRSSSGS 529 (638)
Q Consensus 460 L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~----------~~~~~~~~~~~~l~~~~~~~~~~~~ 529 (638)
++-+.-.+ ....+++++.+|+..|..+.-+....++.+-+.-+. +.-+..+.+++. .++..+...++
T Consensus 100 ~~v~ap~~-s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n~VN~~De~GfTpLi--WAaa~G~i~vV 176 (296)
T KOG0502|consen 100 LLVAAPCG-SVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNNKVNACDEFGFTPLI--WAAAKGHIPVV 176 (296)
T ss_pred hhhcCCCC-CcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhccccCccccCchHhH--HHHhcCchHHH
Confidence 33333334 333445666888888877666655555443332111 222233344444 44445566678
Q ss_pred ccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCcc
Q 006616 530 LNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN 609 (638)
Q Consensus 530 ~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d 609 (638)
.+|+..|++++....+..|+|.+|+..|..++|++||.++.|||..|.+|-|||-||++.+|.+||+.||..||+++..+
T Consensus 177 ~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~ 256 (296)
T KOG0502|consen 177 QFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQED 256 (296)
T ss_pred HHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCccccc
Confidence 88888888888888888889999988888899999998888998888888899999988888999999988899988888
Q ss_pred CCCCCHHHHHHHcCCCcHHHHHHHhhC
Q 006616 610 REGKTSLELAVESNFADSEVLAILSDS 636 (638)
Q Consensus 610 ~~g~TpL~~A~~~g~~d~eiv~lLle~ 636 (638)
..|++++.+|+..|+ .+|+..+|.
T Consensus 257 dsGy~~mdlAValGy---r~Vqqvie~ 280 (296)
T KOG0502|consen 257 DSGYWIMDLAVALGY---RIVQQVIEK 280 (296)
T ss_pred ccCCcHHHHHHHhhh---HHHHHHHHH
Confidence 888999999888886 377777664
No 60
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.70 E-value=2.1e-17 Score=149.44 Aligned_cols=116 Identities=27% Similarity=0.284 Sum_probs=101.5
Q ss_pred ccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHH
Q 006616 519 GNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLL 598 (638)
Q Consensus 519 ~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lL 598 (638)
++..+....+..+|......+|.+|.+|.||||-|+++|+++||+.|+..||+++++...||||||-||.-.+.+|+-+|
T Consensus 70 aae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~L 149 (228)
T KOG0512|consen 70 AAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRL 149 (228)
T ss_pred HHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHH
Confidence 34444445555666677778999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhh
Q 006616 599 LTRGADPRAVNREGKTSLELAVESNFADSEVLAILSD 635 (638)
Q Consensus 599 l~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle 635 (638)
|++|||||+......||||+|+...+ ....+.+|+.
T Consensus 150 LqhgaDVnA~t~g~ltpLhlaa~~rn-~r~t~~~Ll~ 185 (228)
T KOG0512|consen 150 LQHGADVNAQTKGLLTPLHLAAGNRN-SRDTLELLLH 185 (228)
T ss_pred HhccCcccccccccchhhHHhhcccc-hHHHHHHHhh
Confidence 99999999999999999999998875 3456666664
No 61
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.69 E-value=5.3e-17 Score=137.10 Aligned_cols=96 Identities=27% Similarity=0.488 Sum_probs=69.7
Q ss_pred EEEEEEeecCCCCC-CceeeEEEEec-CceEEE---EecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCc
Q 006616 101 RQGYLSKRSSNLRG-DWKRRFFVLDS-RGMLYY---YRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE 175 (638)
Q Consensus 101 k~GyL~Kr~~~~~~-~WkrRwfvL~~-~~~l~y---~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 175 (638)
|+||||+|.+...+ +|.|.||.++. ++.+.+ ..+... .. .|.+
T Consensus 1 k~GYLy~~~k~~~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~-~~----------------------------~g~v--- 48 (104)
T cd01249 1 KEGYLYMQEKSKFGGSWTKYYCTYSKETRIFTMVPFNQKTKT-DM----------------------------KGAV--- 48 (104)
T ss_pred CCceEEEEcCCCCCCeEEEEEEEEEcCCcEEEEEeccccccc-cc----------------------------Cccc---
Confidence 58999999876554 89999999886 334322 111000 00 0111
Q ss_pred cccccceeecccceeecCCCCCCCcceEEEecCCe--eEEEEeCCHHHHHHHHHHHHH
Q 006616 176 KSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTK--NYTLQAESALDQMDWIEKITG 231 (638)
Q Consensus 176 ~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~r--t~~lqA~se~e~~~Wi~ai~~ 231 (638)
...+.|.|..|++++ .+..||||||+|+++++ +++|||+|++|+.+||+||++
T Consensus 49 --~~~e~~~l~sc~~r~-~~~~dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~dg 103 (104)
T cd01249 49 --AQDETLTLKSCSRRK-TESIDKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAMDG 103 (104)
T ss_pred --ccceEEeeeeccccc-cCCccceeeEeeeecCCCCeEEEEecCHHHHHHHHHhhcC
Confidence 122458899999997 56779999999999987 899999999999999999864
No 62
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.69 E-value=1.5e-16 Score=138.05 Aligned_cols=91 Identities=29% Similarity=0.537 Sum_probs=67.3
Q ss_pred EEEEEeecCCCCCCceeeEEEEec-CceEEEEecCCC-CCCCCCCccccccCcCcccCCccccccccccCCCCCCccccc
Q 006616 102 QGYLSKRSSNLRGDWKRRFFVLDS-RGMLYYYRKQCS-KSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA 179 (638)
Q Consensus 102 ~GyL~Kr~~~~~~~WkrRwfvL~~-~~~l~y~~~~~~-~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (638)
+|||.|+++ ..+.|++|||||.. ++.|+||++... .|.
T Consensus 2 ~G~L~K~g~-~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~--------------------------------------- 41 (101)
T cd01235 2 EGYLYKRGA-LLKGWKPRWFVLDPDKHQLRYYDDFEDTAEK--------------------------------------- 41 (101)
T ss_pred eEEEEEcCC-CCCCccceEEEEECCCCEEEEecCCCCCccc---------------------------------------
Confidence 799999955 57899999999986 457888876532 222
Q ss_pred cceeecccce-eec------CCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616 180 RHTVNLLTST-IKV------DADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI 233 (638)
Q Consensus 180 ~~~i~l~~~~-v~~------~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i 233 (638)
+.|+|..++ +.. .+....+.++|.|.++.|+|+|+|+|++|+++||.+|+++|
T Consensus 42 -g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 42 -GCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKTSKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred -eEEEcceeEEEeecCCCCCCCCCCCCceEEEEEeCCceEEEECCCHHHHHHHHHHHHhhC
Confidence 334554322 211 01222457899999999999999999999999999999875
No 63
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.69 E-value=2.9e-16 Score=171.32 Aligned_cols=173 Identities=21% Similarity=0.226 Sum_probs=139.8
Q ss_pred ccccceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccC
Q 006616 455 SVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAG 534 (638)
Q Consensus 455 ~~~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~ 534 (638)
.....|+.|+..||.+.+..+| ..|+.+...--+ -......+.++.++.+.+++++++ ..+....+-+|+.
T Consensus 224 ~~~~pLhlAve~g~~e~lk~~L-~n~~~~a~~~~~------~~~q~kelv~~~d~dg~tpLH~a~--r~G~~~svd~Ll~ 294 (929)
T KOG0510|consen 224 EKATPLHLAVEGGDIEMLKMCL-QNGKKIADVQLD------AMQQEKELVNDEDNDGCTPLHYAA--RQGGPESVDNLLG 294 (929)
T ss_pred CCCcchhhhhhcCCHHHHHHHH-hCccccchhhhH------HHHHHHHHhhcccccCCchHHHHH--HcCChhHHHHHHH
Confidence 4557899999999999887776 555433211100 112223444556666666666554 4555566788999
Q ss_pred CCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHH-cC-CCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC---Ccc
Q 006616 535 TSEGQTMDDLEGCTLLHLACDSADIGMLELLLQ-YG-ANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPR---AVN 609 (638)
Q Consensus 535 ~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~-~g-advn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~---~~d 609 (638)
.|++++.++.++.||||.||.+|+..+|+.||+ .| ...|..|..|.||||+|+..||..++++||+.||... ..|
T Consensus 295 ~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D 374 (929)
T KOG0510|consen 295 FGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEAD 374 (929)
T ss_pred cCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccc
Confidence 999999999999999999999999999999999 55 5789999999999999999999999999999999987 459
Q ss_pred CCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616 610 REGKTSLELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 610 ~~g~TpL~~A~~~g~~d~eiv~lLle~ga 638 (638)
.+|.||||+|+..|+ ..+|++|+.+||
T Consensus 375 ~dg~TaLH~Aa~~g~--~~av~~Li~~Ga 401 (929)
T KOG0510|consen 375 SDGNTALHLAAKYGN--TSAVQKLISHGA 401 (929)
T ss_pred cCCchhhhHHHHhcc--HHHHHHHHHcCC
Confidence 999999999999998 889999999996
No 64
>PHA02741 hypothetical protein; Provisional
Probab=99.69 E-value=8.9e-17 Score=153.18 Aligned_cols=102 Identities=25% Similarity=0.380 Sum_probs=94.9
Q ss_pred CCCCCCCcCCCCCCcHHHHHHHhCC----HHHHHHHHHcCCCCcccCC-CCCcHHHHHHHhCCHHHHHHHHh-CCCCCCC
Q 006616 534 GTSEGQTMDDLEGCTLLHLACDSAD----IGMLELLLQYGANINATDS-RGLTPLHRCILRGKAMFAKLLLT-RGADPRA 607 (638)
Q Consensus 534 ~~~~~~~~~d~~G~TpLh~Aa~~g~----~~~v~~Ll~~gadvn~~d~-~G~TpLh~A~~~g~~~~v~lLl~-~gad~~~ 607 (638)
..|++++..|..|.||||+|+..|+ .+++++|+.+|+++|.++. .|+||||+|+..++.+++++|+. .|++++.
T Consensus 48 ~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~ 127 (169)
T PHA02741 48 CHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHF 127 (169)
T ss_pred hhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCc
Confidence 3468899999999999999999999 5899999999999999985 89999999999999999999998 5999999
Q ss_pred ccCCCCCHHHHHHHcCCCcHHHHHHHhhCC
Q 006616 608 VNREGKTSLELAVESNFADSEVLAILSDSH 637 (638)
Q Consensus 608 ~d~~g~TpL~~A~~~g~~d~eiv~lLle~g 637 (638)
+|.+|.||||+|+..++ .+++++|++.+
T Consensus 128 ~n~~g~tpL~~A~~~~~--~~iv~~L~~~~ 155 (169)
T PHA02741 128 CNADNKSPFELAIDNED--VAMMQILREIV 155 (169)
T ss_pred CCCCCCCHHHHHHHCCC--HHHHHHHHHHH
Confidence 99999999999999987 89999998764
No 65
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.68 E-value=1.2e-16 Score=160.01 Aligned_cols=167 Identities=22% Similarity=0.232 Sum_probs=125.0
Q ss_pred hhhccCCCCcccccccccceecccccccchhhhhhhcccc-cCccccccchhccchhhHHHHHhhhhccccCCCcccccc
Q 006616 441 KLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVNFE-VDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTG 519 (638)
Q Consensus 441 k~fv~~~~~~~~~~~~~~~L~~Av~~~d~~~v~~lLl~~g-aDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~ 519 (638)
..|+....+.+ -+.+|+.+|...|...|..|| +.| +|||..+..|..+..+.....|.
T Consensus 257 L~yvVNlaDsN----GNTALHYsVSHaNF~VV~~LL-DSgvC~VD~qNrAGYtpiMLaALA~lk---------------- 315 (452)
T KOG0514|consen 257 LEYVVNLADSN----GNTALHYAVSHANFDVVSILL-DSGVCDVDQQNRAGYTPVMLAALAKLK---------------- 315 (452)
T ss_pred HHHHhhhhcCC----CCeeeeeeecccchHHHHHHh-ccCcccccccccccccHHHHHHHHhhc----------------
Confidence 34455555543 357999999999988766555 655 69998887774333322221111
Q ss_pred cccCCcccccccccCCCCCCCcC-CCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHH
Q 006616 520 NSSDRSSSGSLNLAGTSEGQTMD-DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLL 598 (638)
Q Consensus 520 ~~~~~~~~~~~lL~~~~~~~~~~-d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lL 598 (638)
......+++-|-..| |||.+ ...|+|+|++|+.+|+.++|+.||..|||||.+|.+|.|+|++|+..||.|||++|
T Consensus 316 --~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklL 392 (452)
T KOG0514|consen 316 --QPADRTVVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLL 392 (452)
T ss_pred --chhhHHHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHH
Confidence 111112222233332 45544 34699999999999999999999999999999999999999999999999999999
Q ss_pred HhC-CCCCCCccCCCCCHHHHHHHcCCCcHHHHHHH
Q 006616 599 LTR-GADPRAVNREGKTSLELAVESNFADSEVLAIL 633 (638)
Q Consensus 599 l~~-gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lL 633 (638)
|.. ++|+...|.+|.|+|.+|...|| .||.-||
T Consensus 393 LA~p~cd~sLtD~DgSTAl~IAleagh--~eIa~ml 426 (452)
T KOG0514|consen 393 LAVPSCDISLTDVDGSTALSIALEAGH--REIAVML 426 (452)
T ss_pred hccCcccceeecCCCchhhhhHHhcCc--hHHHHHH
Confidence 987 89999999999999999999999 6666555
No 66
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.68 E-value=7.9e-17 Score=186.83 Aligned_cols=176 Identities=19% Similarity=0.177 Sum_probs=139.4
Q ss_pred ccceecccccccchhhhhhhcccccCccccccchhccchh--------hHHHHHhhhhc-----cccCCCcccccccccC
Q 006616 457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSL--------TLAKAMLLNEQ-----TSLERSSSSLTGNSSD 523 (638)
Q Consensus 457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~--------~l~~~ll~~~~-----~~~~~~~~~l~~~~~~ 523 (638)
...|+.|+..+....++++|+..|+|+|..+..+..+.+. .++..++..+. +..+.+ +++.+...
T Consensus 308 ~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~T--pLh~Aa~~ 385 (682)
T PHA02876 308 ETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKT--PIHYAAVR 385 (682)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCC--HHHHHHHc
Confidence 3567888888766677788888899998887766444333 23333333221 122334 44445556
Q ss_pred CcccccccccCCCCCCCcCCCCCCcHHHHHHHhCC-HHHHHHHHHcCCCCcccCCCCCcHHHHHHHhC-CHHHHHHHHhC
Q 006616 524 RSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSAD-IGMLELLLQYGANINATDSRGLTPLHRCILRG-KAMFAKLLLTR 601 (638)
Q Consensus 524 ~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~-~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g-~~~~v~lLl~~ 601 (638)
+...++.+|+..|++++..+..|.||||+|+..++ ..++++|+++|+++|.+|..|+||||+|+..+ +.+++++|+++
T Consensus 386 ~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~ 465 (682)
T PHA02876 386 NNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDN 465 (682)
T ss_pred CCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHC
Confidence 66778888999999999999999999999998766 56789999999999999999999999999977 68999999999
Q ss_pred CCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616 602 GADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 602 gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga 638 (638)
|++++.+|..|.|||++|+..+ +++++|++.||
T Consensus 466 Gad~n~~d~~g~tpl~~a~~~~----~~v~~Ll~~~a 498 (682)
T PHA02876 466 GADVNAINIQNQYPLLIALEYH----GIVNILLHYGA 498 (682)
T ss_pred CCCCCCCCCCCCCHHHHHHHhC----CHHHHHHHCCC
Confidence 9999999999999999999875 37888988775
No 67
>PHA02917 ankyrin-like protein; Provisional
Probab=99.68 E-value=1.1e-16 Score=182.45 Aligned_cols=152 Identities=22% Similarity=0.214 Sum_probs=121.1
Q ss_pred ceecccccccc-hhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCC
Q 006616 459 QIWEGVRTNDK-KAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE 537 (638)
Q Consensus 459 ~L~~Av~~~d~-~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~ 537 (638)
.++.++..++. ..++++|++.|||||..+..+. + +........+..+|...|+
T Consensus 334 ~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~---------------------~-----~~~~~~~~~i~~LL~~~ga 387 (661)
T PHA02917 334 ILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGY---------------------F-----RNINIDSYTMKYLLKKEGG 387 (661)
T ss_pred HHHHHHHcCCCcHHHHHHHHHcCCCCCCCCcccc---------------------c-----hhhcCCHHHHHHHHHhcCC
Confidence 34556656653 3578999999999997655441 0 0112222334455556788
Q ss_pred CCCcCCCCCCcHHHHHHHhC-----------------------CHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHH
Q 006616 538 GQTMDDLEGCTLLHLACDSA-----------------------DIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMF 594 (638)
Q Consensus 538 ~~~~~d~~G~TpLh~Aa~~g-----------------------~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~ 594 (638)
+++..+.+|.||||.|+..+ ..+++++|+.+|||+|.+|..|+||||+|+..++.++
T Consensus 388 ~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~ 467 (661)
T PHA02917 388 DAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSL 467 (661)
T ss_pred CccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHH
Confidence 87777888999999987533 3567899999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCccCCCCCHHHHHHH-cCCCcHHHHHHHhhCCC
Q 006616 595 AKLLLTRGADPRAVNREGKTSLELAVE-SNFADSEVLAILSDSHG 638 (638)
Q Consensus 595 v~lLl~~gad~~~~d~~g~TpL~~A~~-~g~~d~eiv~lLle~ga 638 (638)
+++|+++|++++.+|..|.||||+|+. .++ .+++++|+.+|+
T Consensus 468 v~~Ll~~GAdin~~d~~G~T~L~~A~~~~~~--~~iv~~LL~~ga 510 (661)
T PHA02917 468 VSLLLESGSDVNIRSNNGYTCIAIAINESRN--IELLKMLLCHKP 510 (661)
T ss_pred HHHHHHCcCCCCCCCCCCCCHHHHHHHhCCC--HHHHHHHHHcCC
Confidence 999999999999999999999999996 555 899999999875
No 68
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.67 E-value=4.4e-16 Score=140.52 Aligned_cols=92 Identities=29% Similarity=0.629 Sum_probs=71.8
Q ss_pred EEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccccc
Q 006616 101 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 180 (638)
Q Consensus 101 k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 180 (638)
|+|||.|+++ ..+.|++|||+|. ++.|+||+.... ..+.
T Consensus 2 k~G~L~K~~~-~~~~WkkRwfvL~-~~~L~yyk~~~~---------------------------------------~~~~ 40 (125)
T cd01252 2 REGWLLKQGG-RVKTWKRRWFILT-DNCLYYFEYTTD---------------------------------------KEPR 40 (125)
T ss_pred cEEEEEEeCC-CCCCeEeEEEEEE-CCEEEEEcCCCC---------------------------------------CCce
Confidence 7899999965 4678999999998 567788876432 1234
Q ss_pred ceeecccceeecCCCCCCCcceEEEecCC---------------------eeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616 181 HTVNLLTSTIKVDADQSDLRFCFRIISPT---------------------KNYTLQAESALDQMDWIEKITGVIA 234 (638)
Q Consensus 181 ~~i~l~~~~v~~~~~~~~rr~cF~I~t~~---------------------rt~~lqA~se~e~~~Wi~ai~~~i~ 234 (638)
+.|.|..+.|.... +..+++||+|.+++ ++|+|+|+|++|+.+||.+|+.+|.
T Consensus 41 g~I~L~~~~v~~~~-~~~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~ 114 (125)
T cd01252 41 GIIPLENVSIREVE-DPSKPFCFELFSPSDKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASIS 114 (125)
T ss_pred EEEECCCcEEEEcc-cCCCCeeEEEECCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence 45777777776532 34678999998766 4889999999999999999999875
No 69
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.67 E-value=2e-16 Score=162.35 Aligned_cols=109 Identities=22% Similarity=0.183 Sum_probs=97.4
Q ss_pred cccccccCCcccccccccCCCCCCCcCC----CCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccC-CCCCcHHHHHHHhC
Q 006616 516 SLTGNSSDRSSSGSLNLAGTSEGQTMDD----LEGCTLLHLACDSADIGMLELLLQYGANINATD-SRGLTPLHRCILRG 590 (638)
Q Consensus 516 ~l~~~~~~~~~~~~~lL~~~~~~~~~~d----~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d-~~G~TpLh~A~~~g 590 (638)
.+..+...+...++.+|+..|++++..+ ..|.||||+|+..++.+++++|+++||++|..+ ..|.||||+|+..+
T Consensus 36 lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~ 115 (300)
T PHA02884 36 ILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHG 115 (300)
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcC
Confidence 3444445556778888999999999874 589999999999999999999999999999864 57999999999999
Q ss_pred CHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCC
Q 006616 591 KAMFAKLLLTRGADPRAVNREGKTSLELAVESNF 624 (638)
Q Consensus 591 ~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~ 624 (638)
+.+++++|+.+|++++.+|..|.||||+|+..++
T Consensus 116 ~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~ 149 (300)
T PHA02884 116 CLKCLEILLSYGADINIQTNDMVTPIELALMICN 149 (300)
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCC
Confidence 9999999999999999999999999999998654
No 70
>PHA02795 ankyrin-like protein; Provisional
Probab=99.67 E-value=1.5e-16 Score=169.62 Aligned_cols=153 Identities=10% Similarity=-0.041 Sum_probs=123.0
Q ss_pred ccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCCCCCcCCCCC
Q 006616 467 NDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEG 546 (638)
Q Consensus 467 ~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G 546 (638)
.+..+++++|+.+|+++|....- + .......+.++..+...++...++.+|+..||+++.. ++
T Consensus 87 ~~~k~~~~~l~s~~~~~~~~~~~-------------~--~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~ 149 (437)
T PHA02795 87 ITYKDIISALVSKNYMEDIFSII-------------I--KNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--EC 149 (437)
T ss_pred cchHHHHHHHHhcccccchhhhh-------------h--hccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CC
Confidence 45566778888888888832100 0 0111123445555555578888999999999999985 46
Q ss_pred CcHHHHHHHhCCHHHHHHHHHcCCCCc-cc-----CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHH
Q 006616 547 CTLLHLACDSADIGMLELLLQYGANIN-AT-----DSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAV 620 (638)
Q Consensus 547 ~TpLh~Aa~~g~~~~v~~Ll~~gadvn-~~-----d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~ 620 (638)
.||||+|+..++.+++++|+.+|++.+ .. +..+.|++|.|+..++.+++++|+++||+++.+|..|.||||+|+
T Consensus 150 ~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa 229 (437)
T PHA02795 150 LNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAI 229 (437)
T ss_pred CCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHH
Confidence 899999999999999999999998533 22 134789999999999999999999999999999999999999999
Q ss_pred HcCCCcHHHHHHHhhCCC
Q 006616 621 ESNFADSEVLAILSDSHG 638 (638)
Q Consensus 621 ~~g~~d~eiv~lLle~ga 638 (638)
..|+ .+++++|+++||
T Consensus 230 ~~g~--~eiVelLL~~GA 245 (437)
T PHA02795 230 YAGY--IDLVSWLLENGA 245 (437)
T ss_pred HcCC--HHHHHHHHHCCC
Confidence 9998 899999999996
No 71
>PHA02730 ankyrin-like protein; Provisional
Probab=99.66 E-value=1.9e-16 Score=176.57 Aligned_cols=158 Identities=13% Similarity=0.090 Sum_probs=122.8
Q ss_pred ceeccccccc--chhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCC--cccccccccC
Q 006616 459 QIWEGVRTND--KKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDR--SSSGSLNLAG 534 (638)
Q Consensus 459 ~L~~Av~~~d--~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~--~~~~~~lL~~ 534 (638)
-|+.-+..++ ..+++++|+++|||+|.. ..+ .++++.++...+. ...++.+|+.
T Consensus 346 ~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G---------------------~TpLH~Aa~~nnn~i~~eIvelLIs 403 (672)
T PHA02730 346 MLINYLHYGDMVSIPILRCMLDNGATMDKT-TDN---------------------NYPLHDYFVNNNNIVDVNVVRFIVE 403 (672)
T ss_pred HHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCC---------------------CcHHHHHHHHcCCcchHHHHHHHHH
Confidence 3444555564 467889999999999974 333 2333333333221 2567777887
Q ss_pred CCC--CCCcCCCCCCcHHHH---HHHhC---------CHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHh
Q 006616 535 TSE--GQTMDDLEGCTLLHL---ACDSA---------DIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 600 (638)
Q Consensus 535 ~~~--~~~~~d~~G~TpLh~---Aa~~g---------~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~ 600 (638)
.|+ +++..|..|.||||. |...+ ..+++++|+.+||++|.+|..|.||||+|+..++.+++++|++
T Consensus 404 ~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~ 483 (672)
T PHA02730 404 NNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLE 483 (672)
T ss_pred cCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 776 689999999999994 33222 2357999999999999999999999999999999999999999
Q ss_pred CCCCCCCccC-CCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616 601 RGADPRAVNR-EGKTSLELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 601 ~gad~~~~d~-~g~TpL~~A~~~g~~d~eiv~lLle~ga 638 (638)
+||+++.+|. .|.||||+|+..+....+++++|+++|+
T Consensus 484 ~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga 522 (672)
T PHA02730 484 YGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHP 522 (672)
T ss_pred CCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCC
Confidence 9999999997 5999999998752223899999999986
No 72
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.66 E-value=2.3e-16 Score=133.91 Aligned_cols=91 Identities=21% Similarity=0.302 Sum_probs=70.5
Q ss_pred EEEEEEeecCCCCCCceeeEEEEec---CceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616 101 RQGYLSKRSSNLRGDWKRRFFVLDS---RGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS 177 (638)
Q Consensus 101 k~GyL~Kr~~~~~~~WkrRwfvL~~---~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 177 (638)
+.|||.|++++..|+||+|||+|.. ++.|||++....+
T Consensus 1 ~~G~l~K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~--------------------------------------- 41 (98)
T cd01245 1 KKGNLLKRTKSVTKLWKTLYFALILDGSRSHESLLSSPKKT--------------------------------------- 41 (98)
T ss_pred CCCccccCCCCcccccceeEEEEecCCCCceEEEEcCCCCC---------------------------------------
Confidence 3699999977558899999999973 4789998776431
Q ss_pred cccceeecccceeecCCCC-CCCcceEEEecCCe--eEEEEeCCHHHHHHHHHHHHH
Q 006616 178 AARHTVNLLTSTIKVDADQ-SDLRFCFRIISPTK--NYTLQAESALDQMDWIEKITG 231 (638)
Q Consensus 178 ~~~~~i~l~~~~v~~~~~~-~~rr~cF~I~t~~r--t~~lqA~se~e~~~Wi~ai~~ 231 (638)
.+.+.|+|..+.|++..+. .+|+|||+|+++.+ +|+++|++ +|+++||++|+.
T Consensus 42 ~p~gli~l~~~~V~~v~ds~~~r~~cFel~~~~~~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 42 KPIGLIDLSDAYLYPVHDSLFGRPNCFQIVERALPTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred CccceeeccccEEEEccccccCCCeEEEEecCCCCeEEEEeCCH-HHHHHHHHHHhc
Confidence 1223366777777763332 37889999999986 89999999 999999999974
No 73
>PHA02730 ankyrin-like protein; Provisional
Probab=99.66 E-value=3.8e-16 Score=174.08 Aligned_cols=112 Identities=14% Similarity=0.069 Sum_probs=97.8
Q ss_pred CcccccccccCCCCCCCcCCCCCCcHHHHHHHhCC----HHHHHHHHHcCC--CCcccCCCCCcHHHH---HHHhC----
Q 006616 524 RSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSAD----IGMLELLLQYGA--NINATDSRGLTPLHR---CILRG---- 590 (638)
Q Consensus 524 ~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~----~~~v~~Ll~~ga--dvn~~d~~G~TpLh~---A~~~g---- 590 (638)
....++.+|+..||++|.. ..|.||||+|+..++ .+++++||.+|+ ++|.+|..|.||||. |...+
T Consensus 357 v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~ 435 (672)
T PHA02730 357 VSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYH 435 (672)
T ss_pred CcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhcccccc
Confidence 3456778899999999985 789999999998875 899999999998 699999999999994 33332
Q ss_pred -----CHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616 591 -----KAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 591 -----~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga 638 (638)
..+++++|+.+||+++.+|..|.||||+|+..++ .+++++|+++||
T Consensus 436 ~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~--~eive~LI~~GA 486 (672)
T PHA02730 436 CYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNN--IQFARRLLEYGA 486 (672)
T ss_pred ccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCC--HHHHHHHHHCCC
Confidence 2357999999999999999999999999999987 899999999997
No 74
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.65 E-value=1.3e-16 Score=149.56 Aligned_cols=97 Identities=25% Similarity=0.344 Sum_probs=89.8
Q ss_pred CcCCCCCCcHHHHHHHhCCH---HHHHHHHHcCCCCcccCC-CCCcHHHHHHHhCCHHHHHHHHh-CCCCCCCccCCCCC
Q 006616 540 TMDDLEGCTLLHLACDSADI---GMLELLLQYGANINATDS-RGLTPLHRCILRGKAMFAKLLLT-RGADPRAVNREGKT 614 (638)
Q Consensus 540 ~~~d~~G~TpLh~Aa~~g~~---~~v~~Ll~~gadvn~~d~-~G~TpLh~A~~~g~~~~v~lLl~-~gad~~~~d~~g~T 614 (638)
+..|.+|.||||+|+..|+. +++++|++.|+++|.+|. .|+||||+|+..|+.+++++|+. .|++++.+|..|.|
T Consensus 49 ~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~t 128 (154)
T PHA02736 49 LEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKT 128 (154)
T ss_pred HHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCC
Confidence 34688999999999999986 468899999999999984 89999999999999999999998 49999999999999
Q ss_pred HHHHHHHcCCCcHHHHHHHhhCCC
Q 006616 615 SLELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 615 pL~~A~~~g~~d~eiv~lLle~ga 638 (638)
|||+|+..|+ .+++++|+++||
T Consensus 129 pL~~A~~~~~--~~i~~~Ll~~ga 150 (154)
T PHA02736 129 PYYVACERHD--AKMMNILRAKGA 150 (154)
T ss_pred HHHHHHHcCC--HHHHHHHHHcCC
Confidence 9999999998 899999999986
No 75
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.65 E-value=9.7e-17 Score=168.62 Aligned_cols=155 Identities=25% Similarity=0.257 Sum_probs=132.3
Q ss_pred cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCC
Q 006616 458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE 537 (638)
Q Consensus 458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~ 537 (638)
-.++.|.+.+|...|..+| ..|+++|..+.++ .+.++-+.......++.+|+..|+
T Consensus 42 a~~l~A~~~~d~~ev~~ll-~~ga~~~~~n~Dg-----------------------lTalhq~~id~~~e~v~~l~e~ga 97 (527)
T KOG0505|consen 42 AVFLEACSRGDLEEVRKLL-NRGASPNLCNVDG-----------------------LTALHQACIDDNLEMVKFLVENGA 97 (527)
T ss_pred HHHHhccccccHHHHHHHh-ccCCCccccCCcc-----------------------chhHHHHHhcccHHHHHHHHHhcC
Confidence 4577899999999997776 8889998887777 223344444455567888999999
Q ss_pred CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccC-----------------------------------------
Q 006616 538 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATD----------------------------------------- 576 (638)
Q Consensus 538 ~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d----------------------------------------- 576 (638)
+||..|..||||||.|+..|++.++++||.+||++-+.+
T Consensus 98 ~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~m 177 (527)
T KOG0505|consen 98 NVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTM 177 (527)
T ss_pred CccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHH
Confidence 999999999999999999999999999999998754332
Q ss_pred ------------------CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616 577 ------------------SRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 577 ------------------~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga 638 (638)
..|.|+||.|+..|..++.++||++|.+++++|.+|+||||.|+..|. .+++++|+++||
T Consensus 178 l~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~--~~~~elL~~~ga 255 (527)
T KOG0505|consen 178 LDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQ--EDACELLVEHGA 255 (527)
T ss_pred HHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhh--HhHHHHHHHhhc
Confidence 347889999999999999999999999999999999999999999998 789999999986
No 76
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.65 E-value=8.2e-16 Score=134.95 Aligned_cols=92 Identities=23% Similarity=0.417 Sum_probs=66.1
Q ss_pred EEEEEeecCC---CCCCceeeEEEEecCce------EEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCC
Q 006616 102 QGYLSKRSSN---LRGDWKRRFFVLDSRGM------LYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGV 172 (638)
Q Consensus 102 ~GyL~Kr~~~---~~~~WkrRwfvL~~~~~------l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 172 (638)
+|||.|+++. ..++|+||||||.++++ |+||+++..
T Consensus 2 eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~----------------------------------- 46 (108)
T cd01266 2 EGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRK----------------------------------- 46 (108)
T ss_pred ceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCC-----------------------------------
Confidence 7999999653 24599999999997665 788876532
Q ss_pred CCccccccceeecccceeecC-----CCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006616 173 HDEKSAARHTVNLLTSTIKVD-----ADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 232 (638)
Q Consensus 173 ~~~~~~~~~~i~l~~~~v~~~-----~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~ 232 (638)
..+.+.|+|..|.+... .......|+|.|.++.|+|+|+|+|++||++||.+|++.
T Consensus 47 ----~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i~t~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 47 ----FKLEFVIDLESCSQVDPGLLCTAGNCIFGYGFDIETIVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred ----CccceEEECCccEEEcccccccccCcccceEEEEEeCCccEEEEECCHHHHHHHHHHHHhh
Confidence 12233455655443311 111123578999999999999999999999999999764
No 77
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.64 E-value=4.2e-16 Score=151.29 Aligned_cols=116 Identities=28% Similarity=0.368 Sum_probs=102.8
Q ss_pred ccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHh
Q 006616 521 SSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 600 (638)
Q Consensus 521 ~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~ 600 (638)
..+....+.+-|-....|.|..|+.|.+|||+||..|+..+|+.||.+|+.||..+....||||+|+..||.++|..||+
T Consensus 9 regna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~ 88 (448)
T KOG0195|consen 9 REGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLS 88 (448)
T ss_pred hcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHH
Confidence 33444444455666777899999999999999999999999999999999999999888999999999999999999999
Q ss_pred CCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616 601 RGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 601 ~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga 638 (638)
+.+|+|+.+..|.|||||||--|+ ..|.+=|+..||
T Consensus 89 ~kadvnavnehgntplhyacfwgy--dqiaedli~~ga 124 (448)
T KOG0195|consen 89 RKADVNAVNEHGNTPLHYACFWGY--DQIAEDLISCGA 124 (448)
T ss_pred HhcccchhhccCCCchhhhhhhcH--HHHHHHHHhccc
Confidence 999999999999999999999997 678888888886
No 78
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.62 E-value=2.6e-15 Score=127.47 Aligned_cols=90 Identities=30% Similarity=0.565 Sum_probs=70.6
Q ss_pred EEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccccc
Q 006616 101 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 180 (638)
Q Consensus 101 k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 180 (638)
++|||+|+++ ..+.|++|||+|. ++.|+||+.+... ...+.
T Consensus 1 ~~G~L~k~~~-~~~~W~~r~~vl~-~~~L~~~~~~~~~-------------------------------------~~~~~ 41 (91)
T cd01246 1 VEGWLLKWTN-YLKGWQKRWFVLD-NGLLSYYKNKSSM-------------------------------------RGKPR 41 (91)
T ss_pred CeEEEEEecc-cCCCceeeEEEEE-CCEEEEEecCccC-------------------------------------CCCce
Confidence 4899999965 4578999999998 7788888775431 01344
Q ss_pred ceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHH
Q 006616 181 HTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGV 232 (638)
Q Consensus 181 ~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~ 232 (638)
+.|.|..|++..+. .++++|.|.+++ ++|+|+|+|++|+.+||.||+.|
T Consensus 42 ~~i~l~~~~~~~~~---~~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 42 GTILLSGAVISEDD---SDDKCFTIDTGGDKTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred EEEEeceEEEEECC---CCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHhC
Confidence 56778777776532 347999999998 99999999999999999999864
No 79
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.62 E-value=2.9e-15 Score=129.82 Aligned_cols=95 Identities=21% Similarity=0.400 Sum_probs=63.6
Q ss_pred eeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecC-CCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616 99 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQ-CSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS 177 (638)
Q Consensus 99 ~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 177 (638)
++|+|||.|++ +..+.|++|||+|++++.|+||++. .....+ .
T Consensus 1 v~k~G~L~K~g-~~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~-----------------------------------~ 44 (102)
T cd01241 1 VVKEGWLHKRG-EYIKTWRPRYFLLKSDGSFIGYKEKPEDGDPF-----------------------------------L 44 (102)
T ss_pred CcEEEEEEeec-CCCCCCeeEEEEEeCCCeEEEEecCCCccCcc-----------------------------------c
Confidence 36999999995 4678999999999966766555543 221111 1
Q ss_pred cccceeecccceeecCCCCCCCcceEEEe------cCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616 178 AARHTVNLLTSTIKVDADQSDLRFCFRII------SPTKNYTLQAESALDQMDWIEKITGVI 233 (638)
Q Consensus 178 ~~~~~i~l~~~~v~~~~~~~~rr~cF~I~------t~~rt~~lqA~se~e~~~Wi~ai~~~i 233 (638)
.+...+.+..|++... + ..++++|.|. ++.| +|+|+|++|+++||.||+.++
T Consensus 45 i~l~~~~v~~~~~~~~-~-~~~~~~F~i~~~~~~~~~~r--~f~a~s~ee~~eWi~ai~~v~ 102 (102)
T cd01241 45 PPLNNFSVAECQLMKT-E-RPRPNTFIIRCLQWTTVIER--TFHVESPEEREEWIHAIQTVA 102 (102)
T ss_pred cccCCeEEeeeeeeec-c-CCCcceEEEEeccCCcccCE--EEEeCCHHHHHHHHHHHHhhC
Confidence 1122344555666432 2 3467899997 2344 457999999999999998763
No 80
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.62 E-value=2.7e-15 Score=126.80 Aligned_cols=83 Identities=35% Similarity=0.557 Sum_probs=78.2
Q ss_pred HHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHH
Q 006616 550 LHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEV 629 (638)
Q Consensus 550 Lh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~ei 629 (638)
||+||..|+.+++++|++.+.+++. |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+ .++
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~ 74 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGN--LEI 74 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTH--HHH
T ss_pred CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCC--HHH
Confidence 7999999999999999999998887 8999999999999999999999999999999999999999999987 899
Q ss_pred HHHHhhCCC
Q 006616 630 LAILSDSHG 638 (638)
Q Consensus 630 v~lLle~ga 638 (638)
+++|+++|+
T Consensus 75 ~~~Ll~~g~ 83 (89)
T PF12796_consen 75 VKLLLEHGA 83 (89)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHcCC
Confidence 999999985
No 81
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.62 E-value=7.4e-16 Score=146.35 Aligned_cols=135 Identities=16% Similarity=0.110 Sum_probs=110.2
Q ss_pred cceecccccccchhh---hhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcc-ccccccc
Q 006616 458 HQIWEGVRTNDKKAV---YRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSS-SGSLNLA 533 (638)
Q Consensus 458 ~~L~~Av~~~d~~~v---~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~-~~~~lL~ 533 (638)
..|+.|++.++...+ +++|.+.|+++|..+..+ .+++++++....... ..+.+|+
T Consensus 22 ~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g---------------------~t~Lh~Aa~~g~~~~~~~i~~Ll 80 (166)
T PHA02743 22 NTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHG---------------------RQCTHMVAWYDRANAVMKIELLV 80 (166)
T ss_pred cHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCC---------------------CcHHHHHHHhCccCHHHHHHHHH
Confidence 468889999998644 456778899998877666 233344333322221 2356788
Q ss_pred CCCCCCCcCC-CCCCcHHHHHHHhCCHHHHHHHHH-cCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCC
Q 006616 534 GTSEGQTMDD-LEGCTLLHLACDSADIGMLELLLQ-YGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNRE 611 (638)
Q Consensus 534 ~~~~~~~~~d-~~G~TpLh~Aa~~g~~~~v~~Ll~-~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~ 611 (638)
..|++++.+| ..|.||||+|+..|+.+++++|+. .|++++.+|..|+||||+|+..++.+++++|+++|++++.++..
T Consensus 81 ~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~ 160 (166)
T PHA02743 81 NMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSI 160 (166)
T ss_pred HcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccC
Confidence 9999999998 589999999999999999999995 79999999999999999999999999999999999999999887
Q ss_pred CC
Q 006616 612 GK 613 (638)
Q Consensus 612 g~ 613 (638)
|.
T Consensus 161 ~~ 162 (166)
T PHA02743 161 GL 162 (166)
T ss_pred Cc
Confidence 75
No 82
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.62 E-value=1.7e-16 Score=148.83 Aligned_cols=131 Identities=18% Similarity=0.163 Sum_probs=104.1
Q ss_pred cccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCCCCCc
Q 006616 462 EGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTM 541 (638)
Q Consensus 462 ~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~~~~~ 541 (638)
+|+..|.++ |+++|+..||||....... ...+..+..++...++.+|+..+.|+|.
T Consensus 166 WAaa~G~i~-vV~fLL~~GAdp~~lgk~r-----------------------esALsLAt~ggytdiV~lLL~r~vdVNv 221 (296)
T KOG0502|consen 166 WAAAKGHIP-VVQFLLNSGADPDALGKYR-----------------------ESALSLATRGGYTDIVELLLTREVDVNV 221 (296)
T ss_pred HHHhcCchH-HHHHHHHcCCChhhhhhhh-----------------------hhhHhHHhcCChHHHHHHHHhcCCCcce
Confidence 455556554 5577778899887643222 2345556777788888889999999999
Q ss_pred CCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHH
Q 006616 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLE 617 (638)
Q Consensus 542 ~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~ 617 (638)
.|.+|-|||-||++.++.++|+.||..||+++..+..|.+++..|+..|.. +|+..|+.-+..+.+|..-.||+|
T Consensus 222 yDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~~~~~~~~ 296 (296)
T KOG0502|consen 222 YDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQDSEKRTPLH 296 (296)
T ss_pred eccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcccCCCCCC
Confidence 999999999999999999999999999999999999999999999998887 888888877887788877777764
No 83
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.60 E-value=2e-15 Score=122.74 Aligned_cols=103 Identities=33% Similarity=0.515 Sum_probs=91.8
Q ss_pred ceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCCC
Q 006616 459 QIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEG 538 (638)
Q Consensus 459 ~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~~ 538 (638)
.+.+++++|+..+|.+.. ..|.|||...
T Consensus 5 ~~~W~vkNG~~DeVk~~v-~~g~nVn~~~--------------------------------------------------- 32 (117)
T KOG4214|consen 5 SVAWNVKNGEIDEVKQSV-NEGLNVNEIY--------------------------------------------------- 32 (117)
T ss_pred hHhhhhccCcHHHHHHHH-HccccHHHHh---------------------------------------------------
Confidence 467889999999998887 4567887543
Q ss_pred CCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHH
Q 006616 539 QTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLEL 618 (638)
Q Consensus 539 ~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~ 618 (638)
.|++|||||+-.|.++++++|+..||+++.+|..|-|||..|+..||.+||++||+.||+-..+..+|.+.+..
T Consensus 33 ------ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~ea 106 (117)
T KOG4214|consen 33 ------GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEA 106 (117)
T ss_pred ------CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHhh
Confidence 38999999999999999999999999999999999999999999999999999999999999988888776654
Q ss_pred H
Q 006616 619 A 619 (638)
Q Consensus 619 A 619 (638)
+
T Consensus 107 t 107 (117)
T KOG4214|consen 107 T 107 (117)
T ss_pred c
Confidence 3
No 84
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.60 E-value=2e-15 Score=164.87 Aligned_cols=179 Identities=20% Similarity=0.214 Sum_probs=136.6
Q ss_pred ccceecccccccchhhhhhhcccccCccccccchhccchhhHHH------HHhhhh-----cc----ccCCCcccccccc
Q 006616 457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAK------AMLLNE-----QT----SLERSSSSLTGNS 521 (638)
Q Consensus 457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~------~ll~~~-----~~----~~~~~~~~l~~~~ 521 (638)
.+.|+.|+..+..+ +.++|+..|+||-..+..+.++.|-.... .+...+ +. -..+...+++.+.
T Consensus 155 ~TpLh~A~~~~~~E-~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAv 233 (929)
T KOG0510|consen 155 FTPLHLAARKNKVE-AKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAV 233 (929)
T ss_pred CchhhHHHhcChHH-HHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhh
Confidence 35788888777777 77888899999987777665542221111 001111 00 0113344556666
Q ss_pred cCCcccccccccCCCCC---------------CCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHH
Q 006616 522 SDRSSSGSLNLAGTSEG---------------QTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRC 586 (638)
Q Consensus 522 ~~~~~~~~~lL~~~~~~---------------~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A 586 (638)
.++.......+++.|.. +|..|.+|.||||+||..|+++.++.|+..|++++.++.++.||||.|
T Consensus 234 e~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~A 313 (929)
T KOG0510|consen 234 EGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFA 313 (929)
T ss_pred hcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHH
Confidence 66666666666665542 345688999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHh-CC-CCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616 587 ILRGKAMFAKLLLT-RG-ADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 587 ~~~g~~~~v~lLl~-~g-ad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga 638 (638)
+.+|+..+|+-||+ .| ...|..|..|.||||+|+..|| ..++++|++.||
T Consensus 314 A~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH--~~v~qlLl~~GA 365 (929)
T KOG0510|consen 314 AIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGH--DRVVQLLLNKGA 365 (929)
T ss_pred HHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCH--HHHHHHHHhcCh
Confidence 99999999999998 44 5678899999999999999999 789999999997
No 85
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.59 E-value=5.6e-15 Score=125.99 Aligned_cols=88 Identities=19% Similarity=0.225 Sum_probs=62.6
Q ss_pred EEEEeecCC---CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccccc
Q 006616 103 GYLSKRSSN---LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA 179 (638)
Q Consensus 103 GyL~Kr~~~---~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (638)
|.|.||+.. ..++||+|||+|. +..|+||+.+...+.|+
T Consensus 5 ~~~~kr~~~~~~~~~n~KkRwF~Lt-~~~L~Y~k~~~~~~~g~------------------------------------- 46 (98)
T cd01244 5 LQQVDRSRLAWKKVLHFKKRYFQLT-TTHLSWAKDVQCKKSAL------------------------------------- 46 (98)
T ss_pred cEEEEcccCCCccCcCCceeEEEEC-CCEEEEECCCCCceeee-------------------------------------
Confidence 455566533 2368999999998 67788887765555543
Q ss_pred cceeecc--cceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHH
Q 006616 180 RHTVNLL--TSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITG 231 (638)
Q Consensus 180 ~~~i~l~--~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~ 231 (638)
|+|. .+...+.....++.|+|+|++|+++|+|||+|++|+++||.||+.
T Consensus 47 ---I~L~~i~~ve~v~~~~~~~~~~fqivt~~r~~yi~a~s~~E~~~Wi~al~k 97 (98)
T cd01244 47 ---IKLAAIKGTEPLSDKSFVNVDIITIVCEDDTMQLQFEAPVEATDWLNALEK 97 (98)
T ss_pred ---EEccceEEEEEcCCcccCCCceEEEEeCCCeEEEECCCHHHHHHHHHHHhc
Confidence 3332 122222222334569999999999999999999999999999975
No 86
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.58 E-value=1.5e-14 Score=125.14 Aligned_cols=99 Identities=20% Similarity=0.329 Sum_probs=75.3
Q ss_pred eeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccc
Q 006616 99 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 178 (638)
Q Consensus 99 ~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (638)
.+|+|||.|.+.. .+.|+.|||+|.++ .|.|++.... .+ .....
T Consensus 2 ~ikeG~L~K~~~~-~~~~k~RyffLFnd-~Ll~~~~~~~--~~--------------------------------~~~y~ 45 (101)
T cd01219 2 LLKEGSVLKISST-TEKTEERYLFLFND-LLLYCVPRKM--IG--------------------------------GSKFK 45 (101)
T ss_pred cccceEEEEEecC-CCCceeEEEEEeCC-EEEEEEcccc--cC--------------------------------CCcEE
Confidence 3689999999654 56899999999977 5444443211 00 12234
Q ss_pred ccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616 179 ARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA 234 (638)
Q Consensus 179 ~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~ 234 (638)
..+.|+|..+.|.. .++.+.+++|.|.+++++|+|+|+|++|+++||.+|+.+|.
T Consensus 46 ~~~~i~l~~~~v~~-~~~~~~~~~F~I~~~~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 46 VRARIDVSGMQVCE-GDNLERPHSFLVSGKQRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred EEEEEecccEEEEe-CCCCCcCceEEEecCCcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 55668888888874 34456789999999999999999999999999999999985
No 87
>PHA02741 hypothetical protein; Provisional
Probab=99.58 E-value=9.8e-15 Score=139.13 Aligned_cols=98 Identities=24% Similarity=0.251 Sum_probs=87.9
Q ss_pred CCcCCCCCCcHHHHHHHhCCHHHHHHHHH------cCCCCcccCCCCCcHHHHHHHhCC----HHHHHHHHhCCCCCCCc
Q 006616 539 QTMDDLEGCTLLHLACDSADIGMLELLLQ------YGANINATDSRGLTPLHRCILRGK----AMFAKLLLTRGADPRAV 608 (638)
Q Consensus 539 ~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~------~gadvn~~d~~G~TpLh~A~~~g~----~~~v~lLl~~gad~~~~ 608 (638)
++..|..|.||||+|+..|+.+++++|+. .|++++.+|..|+||||+|+..|+ .+++++|+++|++++.+
T Consensus 14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~ 93 (169)
T PHA02741 14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQ 93 (169)
T ss_pred hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC
Confidence 34567789999999999999999999854 368999999999999999999998 58999999999999999
Q ss_pred cC-CCCCHHHHHHHcCCCcHHHHHHHhhC-CC
Q 006616 609 NR-EGKTSLELAVESNFADSEVLAILSDS-HG 638 (638)
Q Consensus 609 d~-~g~TpL~~A~~~g~~d~eiv~lLle~-ga 638 (638)
+. .|.||||+|+..++ .+++++|++. |+
T Consensus 94 ~~~~g~TpLh~A~~~~~--~~iv~~Ll~~~g~ 123 (169)
T PHA02741 94 EMLEGDTALHLAAHRRD--HDLAEWLCCQPGI 123 (169)
T ss_pred CcCCCCCHHHHHHHcCC--HHHHHHHHhCCCC
Confidence 85 99999999999998 8999999973 53
No 88
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.57 E-value=5.7e-15 Score=170.86 Aligned_cols=178 Identities=22% Similarity=0.290 Sum_probs=134.3
Q ss_pred cceecccccccchhhhhhhcccccCccccccchhccchhhHHH--------HHhhhhcc---ccCCCcccccccccCCcc
Q 006616 458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAK--------AMLLNEQT---SLERSSSSLTGNSSDRSS 526 (638)
Q Consensus 458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~--------~ll~~~~~---~~~~~~~~l~~~~~~~~~ 526 (638)
..||-|...++.. +++++++.|+++|..+..+.+..++...+ .++....+ ......+.++.+...+..
T Consensus 409 Tplh~aa~~~~~~-~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~ 487 (1143)
T KOG4177|consen 409 TPLHVAAHYGNPR-VVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHT 487 (1143)
T ss_pred ceeeehhhccCcc-eEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCc
Confidence 3455555444433 44555677777777666664433332222 11111111 112334455556666666
Q ss_pred cccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC
Q 006616 527 SGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPR 606 (638)
Q Consensus 527 ~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~ 606 (638)
..+.+|+..++..+.....|-|+||.|...+...+++.++++|++++.++..|.||||.|+.+|+..+|++||++|||++
T Consensus 488 ~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ 567 (1143)
T KOG4177|consen 488 EVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVN 567 (1143)
T ss_pred hHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCcccc
Confidence 67777788788888888888888888888888899999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616 607 AVNREGKTSLELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 607 ~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga 638 (638)
.++..|+||||.|+..|+ .+|+.+|+++||
T Consensus 568 ak~~~G~TPLH~Aa~~G~--~~i~~LLlk~GA 597 (1143)
T KOG4177|consen 568 AKDKLGYTPLHQAAQQGH--NDIAELLLKHGA 597 (1143)
T ss_pred ccCCCCCChhhHHHHcCh--HHHHHHHHHcCC
Confidence 999999999999999998 889999999997
No 89
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.57 E-value=3.3e-14 Score=122.90 Aligned_cols=97 Identities=33% Similarity=0.659 Sum_probs=76.3
Q ss_pred eeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccc
Q 006616 99 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 178 (638)
Q Consensus 99 ~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (638)
.+++|||.|++ ...+.|++|||||. ++.|+||+..... ....
T Consensus 1 ~~~~G~L~~~~-~~~~~wk~r~~vL~-~~~L~~~~~~~~~------------------------------------~~~~ 42 (104)
T PF00169_consen 1 CIKEGWLLKKS-SSRKKWKKRYFVLR-DSYLLYYKSSKDK------------------------------------SDSK 42 (104)
T ss_dssp EEEEEEEEEEE-SSSSSEEEEEEEEE-TTEEEEESSTTTT------------------------------------TESS
T ss_pred CEEEEEEEEEC-CCCCCeEEEEEEEE-CCEEEEEecCccc------------------------------------ccee
Confidence 36899999996 45678999999998 5667777765320 1223
Q ss_pred ccceeecccceeecCCCC-----CCCcceEEEecCCe-eEEEEeCCHHHHHHHHHHHHHHH
Q 006616 179 ARHTVNLLTSTIKVDADQ-----SDLRFCFRIISPTK-NYTLQAESALDQMDWIEKITGVI 233 (638)
Q Consensus 179 ~~~~i~l~~~~v~~~~~~-----~~rr~cF~I~t~~r-t~~lqA~se~e~~~Wi~ai~~~i 233 (638)
+...|+|..+.|....+. .+.++||.|.++.+ +|+|+|+|++++.+||.+|+.++
T Consensus 43 ~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 43 PKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTPNGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp ESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred eeEEEEecCceEEEcCccccccccCCCcEEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 445688888887764443 36789999999996 99999999999999999999886
No 90
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.57 E-value=1.9e-15 Score=146.79 Aligned_cols=139 Identities=24% Similarity=0.250 Sum_probs=121.9
Q ss_pred eecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCCCC
Q 006616 460 IWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQ 539 (638)
Q Consensus 460 L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~~~ 539 (638)
+|.-++.|+.-.|.-.|-+..-|.|.-|..+ ..+++.++..+...++..|+..|+.+
T Consensus 4 if~wcregna~qvrlwld~tehdln~gddhg-----------------------fsplhwaakegh~aivemll~rgarv 60 (448)
T KOG0195|consen 4 IFGWCREGNAFQVRLWLDDTEHDLNVGDDHG-----------------------FSPLHWAAKEGHVAIVEMLLSRGARV 60 (448)
T ss_pred hhhhhhcCCeEEEEEEecCcccccccccccC-----------------------cchhhhhhhcccHHHHHHHHhccccc
Confidence 5666778888877777767777888776655 34556666677777888899999999
Q ss_pred CcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHH
Q 006616 540 TMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELA 619 (638)
Q Consensus 540 ~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A 619 (638)
|..+....||||+|+.+|+.++|..||++.+|||+.+..|.|||||||.-|...+++-|+..||.+++.+.+|.|||..|
T Consensus 61 n~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldka 140 (448)
T KOG0195|consen 61 NSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA 140 (448)
T ss_pred ccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HH
Q 006616 620 VE 621 (638)
Q Consensus 620 ~~ 621 (638)
.-
T Consensus 141 kp 142 (448)
T KOG0195|consen 141 KP 142 (448)
T ss_pred ch
Confidence 43
No 91
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.56 E-value=3.2e-15 Score=149.78 Aligned_cols=127 Identities=25% Similarity=0.270 Sum_probs=102.6
Q ss_pred hhccccCCCcccccccccCCcccccccccCCC-CCCCcCCCCCCcHHHHHHHh-----CCHHHHHHHHHcCCCCcccCC-
Q 006616 505 NEQTSLERSSSSLTGNSSDRSSSGSLNLAGTS-EGQTMDDLEGCTLLHLACDS-----ADIGMLELLLQYGANINATDS- 577 (638)
Q Consensus 505 ~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~-~~~~~~d~~G~TpLh~Aa~~-----g~~~~v~~Ll~~gadvn~~d~- 577 (638)
+-.+.++.+.+++. ..+.+..++..|++.| ++++..+.-|.||+++|+.. .+..+|+.|+.. +|||++-.
T Consensus 262 NlaDsNGNTALHYs--VSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~m-gnVNaKAsQ 338 (452)
T KOG0514|consen 262 NLADSNGNTALHYA--VSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKM-GDVNAKASQ 338 (452)
T ss_pred hhhcCCCCeeeeee--ecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhc-cCcchhhhh
Confidence 33444555555544 4445555666666555 68999999999999998864 346788888764 57887665
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhC
Q 006616 578 RGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDS 636 (638)
Q Consensus 578 ~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ 636 (638)
.|.|+|++|+..|+.++|+.||..|||||++|.+|.|+|+.|+++|| .|||++||..
T Consensus 339 ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGh--kEivklLLA~ 395 (452)
T KOG0514|consen 339 HGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGH--KEIVKLLLAV 395 (452)
T ss_pred hcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhCh--HHHHHHHhcc
Confidence 69999999999999999999999999999999999999999999999 9999999864
No 92
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=3.2e-14 Score=137.39 Aligned_cols=95 Identities=27% Similarity=0.575 Sum_probs=73.2
Q ss_pred ceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecC-CCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616 98 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQ-CSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 176 (638)
Q Consensus 98 ~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 176 (638)
.+.++|||+|.+++..++||||||+|. +..|||+... ++.|.|.
T Consensus 259 npdREGWLlKlgg~rvktWKrRWFiLt-dNCLYYFe~tTDKEPrGI---------------------------------- 303 (395)
T KOG0930|consen 259 NPDREGWLLKLGGNRVKTWKRRWFILT-DNCLYYFEYTTDKEPRGI---------------------------------- 303 (395)
T ss_pred CccccceeeeecCCcccchhheeEEee-cceeeeeeeccCCCCCcc----------------------------------
Confidence 467899999998877889999999998 5566776554 3344443
Q ss_pred ccccceeecccceeecCCCCCCCcceEEEecCC----------------------eeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616 177 SAARHTVNLLTSTIKVDADQSDLRFCFRIISPT----------------------KNYTLQAESALDQMDWIEKITGVIA 234 (638)
Q Consensus 177 ~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~----------------------rt~~lqA~se~e~~~Wi~ai~~~i~ 234 (638)
|.|.+-+|+. -+++.++|||+|..|+ .+|.++|.+.+|+++||++|+.+|.
T Consensus 304 ------IpLeNlsir~-VedP~kP~cfEly~ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is 376 (395)
T KOG0930|consen 304 ------IPLENLSIRE-VEDPKKPNCFELYIPSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAIS 376 (395)
T ss_pred ------eeccccceee-ccCCCCCCeEEEecCCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence 4454445553 4567889999998753 1489999999999999999998885
No 93
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.52 E-value=1.4e-14 Score=169.64 Aligned_cols=166 Identities=22% Similarity=0.230 Sum_probs=118.3
Q ss_pred ccceecccccccchhhhhhhccc--ccCccccccchhccch--------hhHHHHHhhhhc-cccCCCcccccccccCCc
Q 006616 457 AHQIWEGVRTNDKKAVYRHIVNF--EVDVNAVYEQVSCISS--------LTLAKAMLLNEQ-TSLERSSSSLTGNSSDRS 525 (638)
Q Consensus 457 ~~~L~~Av~~~d~~~v~~lLl~~--gaDvN~~~~~~~~~~~--------~~l~~~ll~~~~-~~~~~~~~~l~~~~~~~~ 525 (638)
.++++.|++.||...|.++| +. ++|+|..|..+..+.+ ..+++.|+..+. +..+.++++.++......
T Consensus 18 ~~~~l~A~~~g~~~~v~~lL-~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~~~ 96 (743)
T TIGR00870 18 EKAFLPAAERGDLASVYRDL-EEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDA 96 (743)
T ss_pred HHHHHHHHHcCCHHHHHHHh-ccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhccHHH
Confidence 46788889999988887766 55 7888887776644444 244444544332 334444444333211111
Q ss_pred -ccccccccCCCCC------C----CcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccC--------------CCCC
Q 006616 526 -SSGSLNLAGTSEG------Q----TMDDLEGCTLLHLACDSADIGMLELLLQYGANINATD--------------SRGL 580 (638)
Q Consensus 526 -~~~~~lL~~~~~~------~----~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d--------------~~G~ 580 (638)
.....++...+.+ + ...+..|.||||+||..|+.++|++||++||++|.++ ..|.
T Consensus 97 v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~ 176 (743)
T TIGR00870 97 VEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGE 176 (743)
T ss_pred HHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccc
Confidence 1122223332211 1 1123469999999999999999999999999999753 2589
Q ss_pred cHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcC
Q 006616 581 TPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESN 623 (638)
Q Consensus 581 TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g 623 (638)
||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..+
T Consensus 177 tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~ 219 (743)
T TIGR00870 177 SPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMEN 219 (743)
T ss_pred cHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999886
No 94
>PHA02792 ankyrin-like protein; Provisional
Probab=99.52 E-value=2.2e-14 Score=158.59 Aligned_cols=118 Identities=19% Similarity=0.192 Sum_probs=99.6
Q ss_pred ccCCcccccccccCCCCCCCcCCCCC--CcHHHHHHHhCCH---HHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHH
Q 006616 521 SSDRSSSGSLNLAGTSEGQTMDDLEG--CTLLHLACDSADI---GMLELLLQYGANINATDSRGLTPLHRCILRGKAMFA 595 (638)
Q Consensus 521 ~~~~~~~~~~lL~~~~~~~~~~d~~G--~TpLh~Aa~~g~~---~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v 595 (638)
+..+....+.+|+..|++++..|..| .||||+|+..... +++++|+.+|||+|.+|..|+||||+|+..++.+++
T Consensus 347 a~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eiv 426 (631)
T PHA02792 347 FDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLV 426 (631)
T ss_pred HHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHH
Confidence 44556677888999999999998875 6999998776654 468999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCccCCCCCHHHHHHHcCC-Cc-------HHHHHHHhhCCC
Q 006616 596 KLLLTRGADPRAVNREGKTSLELAVESNF-AD-------SEVLAILSDSHG 638 (638)
Q Consensus 596 ~lLl~~gad~~~~d~~g~TpL~~A~~~g~-~d-------~eiv~lLle~ga 638 (638)
++|+++|++++.+|..|.|||++|+...+ .+ .+++++|+.+|.
T Consensus 427 elLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p 477 (631)
T PHA02792 427 EWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLP 477 (631)
T ss_pred HHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999976211 11 356888887763
No 95
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.52 E-value=1e-14 Score=132.14 Aligned_cols=145 Identities=24% Similarity=0.223 Sum_probs=123.2
Q ss_pred ccceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCC
Q 006616 457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTS 536 (638)
Q Consensus 457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~ 536 (638)
.+-+++|+..+.+..|.++|.+..-.||.+|.++ .++|+-++.++...++..|+..|
T Consensus 64 ~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~-----------------------YTpLHRAaYn~h~div~~ll~~g 120 (228)
T KOG0512|consen 64 IRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDE-----------------------YTPLHRAAYNGHLDIVHELLLSG 120 (228)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcccccccccccc-----------------------ccHHHHHHhcCchHHHHHHHHcc
Confidence 3556789999999999999876666788888777 44556666777777888888999
Q ss_pred CCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCC-HHHHHHHHh-CCCCCCCccCCCCC
Q 006616 537 EGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGK-AMFAKLLLT-RGADPRAVNREGKT 614 (638)
Q Consensus 537 ~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~-~~~v~lLl~-~gad~~~~d~~g~T 614 (638)
++++.+-..||||||-||.-.+.+++.+||++|+|||++....+||||+|+...+ ...+.+|+. .+.++..++..+.|
T Consensus 121 An~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eet 200 (228)
T KOG0512|consen 121 ANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEET 200 (228)
T ss_pred CCcccccccCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccch
Confidence 9999999999999999999999999999999999999999999999999997654 445666554 58999999999999
Q ss_pred HHHHHHHcCC
Q 006616 615 SLELAVESNF 624 (638)
Q Consensus 615 pL~~A~~~g~ 624 (638)
|+.+|.+.+-
T Consensus 201 a~~iARRT~~ 210 (228)
T KOG0512|consen 201 AFDIARRTSM 210 (228)
T ss_pred HHHHHHHhhh
Confidence 9999988753
No 96
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.51 E-value=8.5e-14 Score=143.08 Aligned_cols=95 Identities=22% Similarity=0.164 Sum_probs=84.9
Q ss_pred CCCCCCcH-HHHHHHhCCHHHHHHHHHcCCCCcccC----CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCc-cCCCCCH
Q 006616 542 DDLEGCTL-LHLACDSADIGMLELLLQYGANINATD----SRGLTPLHRCILRGKAMFAKLLLTRGADPRAV-NREGKTS 615 (638)
Q Consensus 542 ~d~~G~Tp-Lh~Aa~~g~~~~v~~Ll~~gadvn~~d----~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~-d~~g~Tp 615 (638)
+|..|+|+ ||.|+..|+.+++++|+++||++|.++ ..|.||||+|+..++.+++++|+++||+++.+ +..|.||
T Consensus 28 ~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~Tp 107 (300)
T PHA02884 28 KNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITP 107 (300)
T ss_pred cCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCH
Confidence 46667665 556667789999999999999999974 58999999999999999999999999999996 4689999
Q ss_pred HHHHHHcCCCcHHHHHHHhhCCC
Q 006616 616 LELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 616 L~~A~~~g~~d~eiv~lLle~ga 638 (638)
||+|+..++ .+++++|+++||
T Consensus 108 Lh~Aa~~~~--~eivklLL~~GA 128 (300)
T PHA02884 108 LYISVLHGC--LKCLEILLSYGA 128 (300)
T ss_pred HHHHHHcCC--HHHHHHHHHCCC
Confidence 999999998 899999999986
No 97
>PF15409 PH_8: Pleckstrin homology domain
Probab=99.51 E-value=1.1e-13 Score=114.52 Aligned_cols=87 Identities=29% Similarity=0.512 Sum_probs=71.6
Q ss_pred EEEEeecCCCCCCceeeEEEEe-cCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccccccc
Q 006616 103 GYLSKRSSNLRGDWKRRFFVLD-SRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARH 181 (638)
Q Consensus 103 GyL~Kr~~~~~~~WkrRwfvL~-~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 181 (638)
|||.|+.....++|+||||+|+ .+|.|.||.++.+ ...++
T Consensus 1 G~llKkrr~~lqG~~kRyFvL~~~~G~LsYy~~~~~---------------------------------------~~~rG 41 (89)
T PF15409_consen 1 GWLLKKRRKPLQGWHKRYFVLDFEKGTLSYYRNQNS---------------------------------------GKLRG 41 (89)
T ss_pred CcceeeccccCCCceeEEEEEEcCCcEEEEEecCCC---------------------------------------CeeEe
Confidence 8999997777889999999994 4899999987643 13455
Q ss_pred eeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006616 182 TVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 232 (638)
Q Consensus 182 ~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~ 232 (638)
.|++..+.|.+.. +..+|+|.+...+|+|.|.|++|.+.||.||+.+
T Consensus 42 si~v~~a~is~~~----~~~~I~idsg~~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 42 SIDVSLAVISANK----KSRRIDIDSGDEIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred EEEccceEEEecC----CCCEEEEEcCCeEEEEEcCCHHHHHHHHHHHHhc
Confidence 6788888777532 2458999999999999999999999999999864
No 98
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.51 E-value=1.8e-13 Score=117.22 Aligned_cols=97 Identities=24% Similarity=0.320 Sum_probs=72.2
Q ss_pred eeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccc
Q 006616 99 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 178 (638)
Q Consensus 99 ~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (638)
-+|||+|.|.++. +.|. |||+|-+|-+||+...... .....
T Consensus 2 ~ikEG~L~K~~~k--~~~~-R~~FLFnD~LlY~~~~~~~------------------------------------~~~y~ 42 (99)
T cd01220 2 FIRQGCLLKLSKK--GLQQ-RMFFLFSDLLLYTSKSPTD------------------------------------QNSFR 42 (99)
T ss_pred eeeEEEEEEEeCC--CCce-EEEEEccceEEEEEeecCC------------------------------------CceEE
Confidence 3799999999653 3455 6666667877777554321 01223
Q ss_pred ccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616 179 ARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA 234 (638)
Q Consensus 179 ~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~ 234 (638)
..+.++|..+.|+-..++.+.+|||+|.+++++|+|+|.|++|+++||++|+.+|.
T Consensus 43 ~~~~i~L~~~~V~~~~~~~~~~~~F~I~~~~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 43 ILGHLPLRGMLTEESEHEWGVPHCFTIFGGQCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred EEEEEEcCceEEeeccCCcCCceeEEEEcCCeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 45668888888875434345689999999999999999999999999999999985
No 99
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.51 E-value=2.7e-14 Score=120.67 Aligned_cols=83 Identities=33% Similarity=0.438 Sum_probs=71.4
Q ss_pred CCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCC
Q 006616 523 DRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602 (638)
Q Consensus 523 ~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~g 602 (638)
.+....+..|+..+.+++. |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus 7 ~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 82 (89)
T PF12796_consen 7 NGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLLEHG 82 (89)
T ss_dssp TTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 3444455566667777766 899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcc
Q 006616 603 ADPRAVN 609 (638)
Q Consensus 603 ad~~~~d 609 (638)
++++.+|
T Consensus 83 ~~~~~~n 89 (89)
T PF12796_consen 83 ADVNIRN 89 (89)
T ss_dssp T-TTSS-
T ss_pred CCCCCcC
Confidence 9999875
No 100
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=99.50 E-value=1.6e-13 Score=120.96 Aligned_cols=112 Identities=28% Similarity=0.480 Sum_probs=54.5
Q ss_pred EEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccccc
Q 006616 101 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 180 (638)
Q Consensus 101 k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 180 (638)
|+|||+|++....+.|++|||+|.++++|.||+.+.....+.+........ ...|- +.. ....
T Consensus 1 k~G~l~K~~~~~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~---~~~~~---~~~-----------~~~~ 63 (112)
T PF15413_consen 1 KEGYLYKWGNKFGKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRV---IRKGD---WSI-----------SRRS 63 (112)
T ss_dssp EEEEEEE--TTS-S--EEEEEEEE-TTEEEEESS-------------TT-S---B-SEE---EE--------------GG
T ss_pred CCceEEEecCCCCcCccccEEEEEeCCEEEEeecccccccccccccchhce---Eeecc---cCc-----------cccc
Confidence 689999996655789999999998788999998843322111111000000 00000 000 0000
Q ss_pred ceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006616 181 HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 232 (638)
Q Consensus 181 ~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~ 232 (638)
..+...... ++ ....-...|.|.||+|+|+|.|++.+|+.+||+||+.+
T Consensus 64 ~~~~~~~~~-~~--~~~~~~~~~~i~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 64 SRIQGIKDK-NP--FGEIHLKVFSIFTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp GT-EEEES--T----SS-SSEEEEEE-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred ccccccccC-Cc--ccCcCCCCcEEECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 000000000 11 11112467999999999999999999999999999874
No 101
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.49 E-value=7.1e-14 Score=164.85 Aligned_cols=118 Identities=19% Similarity=0.133 Sum_probs=105.9
Q ss_pred ccccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHH
Q 006616 517 LTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAK 596 (638)
Q Consensus 517 l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~ 596 (638)
+..++..+....+..|+..|+++|..|..|+||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..|+.++++
T Consensus 529 L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~ 608 (823)
T PLN03192 529 LLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFR 608 (823)
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHH
Confidence 34444456667777888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616 597 LLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 597 lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga 638 (638)
+|++.++..+. ..|.+|||.|+..|+ .+++++|+++|+
T Consensus 609 ~L~~~~~~~~~--~~~~~~L~~Aa~~g~--~~~v~~Ll~~Ga 646 (823)
T PLN03192 609 ILYHFASISDP--HAAGDLLCTAAKRND--LTAMKELLKQGL 646 (823)
T ss_pred HHHhcCcccCc--ccCchHHHHHHHhCC--HHHHHHHHHCCC
Confidence 99998877653 457799999999998 899999999986
No 102
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.48 E-value=2.5e-14 Score=155.35 Aligned_cols=166 Identities=21% Similarity=0.201 Sum_probs=133.9
Q ss_pred cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCC
Q 006616 458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE 537 (638)
Q Consensus 458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~ 537 (638)
+.|..|++.+|...+.++|...+.---...... +..-.+.++. ...+.++-+..++...+..+|++..+
T Consensus 5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~t---------rsds~n~qd~--~gfTalhha~Lng~~~is~llle~ea 73 (854)
T KOG0507|consen 5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTT---------RSDSHNLQDY--SGFTLLHHAVLNGQNQISKLLLDYEA 73 (854)
T ss_pred hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCC---------CCccccccCc--cchhHHHHHHhcCchHHHHHHhcchh
Confidence 578899999999999888865443100000000 0000111122 22445566667777778888999999
Q ss_pred CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHH
Q 006616 538 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLE 617 (638)
Q Consensus 538 ~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~ 617 (638)
-++..|..|.+|||+|++.|+.++|++||..+..+|+++..|.||||.|++.||.+++.+||++|+|+-++|..+.|+|+
T Consensus 74 ~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ld 153 (854)
T KOG0507|consen 74 LLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLD 153 (854)
T ss_pred hhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcHHHHHHHhhC
Q 006616 618 LAVESNFADSEVLAILSDS 636 (638)
Q Consensus 618 ~A~~~g~~d~eiv~lLle~ 636 (638)
+|++.|. .++|.+|+..
T Consensus 154 lA~qfgr--~~Vvq~ll~~ 170 (854)
T KOG0507|consen 154 LASRFGR--AEVVQMLLQK 170 (854)
T ss_pred HHHHhhh--hHHHHHHhhh
Confidence 9999998 8999999864
No 103
>PHA02792 ankyrin-like protein; Provisional
Probab=99.46 E-value=1.2e-13 Score=152.69 Aligned_cols=117 Identities=17% Similarity=0.073 Sum_probs=104.0
Q ss_pred ccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHH-hCCHHHHHHHHHcCCCCc------------------------
Q 006616 519 GNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACD-SADIGMLELLLQYGANIN------------------------ 573 (638)
Q Consensus 519 ~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~-~g~~~~v~~Ll~~gadvn------------------------ 573 (638)
.++.++..+.+.+|+..||++|..+..|.||||+|+. .++++++++||++|||++
T Consensus 78 ~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~ 157 (631)
T PHA02792 78 LCSDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDD 157 (631)
T ss_pred HHHhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhh
Confidence 4456677788889999999999999999999999976 699999999999998743
Q ss_pred ------------ccCCCCCcHHHHHHHhC-------CHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHh
Q 006616 574 ------------ATDSRGLTPLHRCILRG-------KAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILS 634 (638)
Q Consensus 574 ------------~~d~~G~TpLh~A~~~g-------~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLl 634 (638)
..|..|.||||+|+..+ +.+++++|+.+|++++.+|..|.||||+|+...+-+.||+++|+
T Consensus 158 ~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~ 237 (631)
T PHA02792 158 ELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALF 237 (631)
T ss_pred hccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHH
Confidence 34456999999999999 89999999999999999999999999999999865789999998
Q ss_pred h
Q 006616 635 D 635 (638)
Q Consensus 635 e 635 (638)
+
T Consensus 238 ~ 238 (631)
T PHA02792 238 D 238 (631)
T ss_pred h
Confidence 6
No 104
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.42 E-value=2.5e-13 Score=127.32 Aligned_cols=97 Identities=18% Similarity=0.168 Sum_probs=80.8
Q ss_pred CCCcccccccccCCcc-cccccccCCCCCCCcCC-CCCCcHHHHHHHhCCHHHHHHHHH-cCCCCcccCCCCCcHHHHHH
Q 006616 511 ERSSSSLTGNSSDRSS-SGSLNLAGTSEGQTMDD-LEGCTLLHLACDSADIGMLELLLQ-YGANINATDSRGLTPLHRCI 587 (638)
Q Consensus 511 ~~~~~~l~~~~~~~~~-~~~~lL~~~~~~~~~~d-~~G~TpLh~Aa~~g~~~~v~~Ll~-~gadvn~~d~~G~TpLh~A~ 587 (638)
+.+++++++....... ..+.+|+..|++++..| ..|.||||+|+..|+.+++++|+. .|++++.+|..|+||||+|+
T Consensus 55 g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~ 134 (154)
T PHA02736 55 GKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVAC 134 (154)
T ss_pred CCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHH
Confidence 3455555443322211 34567889999999998 489999999999999999999998 49999999999999999999
Q ss_pred HhCCHHHHHHHHhCCCCCCC
Q 006616 588 LRGKAMFAKLLLTRGADPRA 607 (638)
Q Consensus 588 ~~g~~~~v~lLl~~gad~~~ 607 (638)
..|+.+++++|+++|+++++
T Consensus 135 ~~~~~~i~~~Ll~~ga~~~~ 154 (154)
T PHA02736 135 ERHDAKMMNILRAKGAQCKV 154 (154)
T ss_pred HcCCHHHHHHHHHcCCCCCC
Confidence 99999999999999998763
No 105
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.42 E-value=2e-13 Score=143.88 Aligned_cols=199 Identities=20% Similarity=0.242 Sum_probs=135.3
Q ss_pred CCCCHHHHHHHHHHHHhhhh-hccCCCCcc-cccccccceecccccccchhhhhhhcccccCccccccch-------hcc
Q 006616 423 HSDSISVKEKFIHAKYAEKL-FVRKPKDNQ-YLHSVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCI 493 (638)
Q Consensus 423 ~~~~~~~re~fI~~KY~~k~-fv~~~~~~~-~~~~~~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~-------~~~ 493 (638)
..++...+++--+.-|.+.. |+.....++ ...+-...|+.++-..+ ..|+++|++.|++||..+..+ ++.
T Consensus 38 f~~sa~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~-~e~v~~l~e~ga~Vn~~d~e~wtPlhaaasc 116 (527)
T KOG0505|consen 38 FEDSAVFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDN-LEMVKFLVENGANVNAQDNEGWTPLHAAASC 116 (527)
T ss_pred CCchHHHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhccc-HHHHHHHHHhcCCccccccccCCcchhhccc
Confidence 33444445555555554322 233222222 22333466776665544 556778889999999988777 344
Q ss_pred chhhHHHHHhhhhccc------------cCCCccccc-----ccccCCccc------------ccccccCCCCCCCcCCC
Q 006616 494 SSLTLAKAMLLNEQTS------------LERSSSSLT-----GNSSDRSSS------------GSLNLAGTSEGQTMDDL 544 (638)
Q Consensus 494 ~~~~l~~~ll~~~~~~------------~~~~~~~l~-----~~~~~~~~~------------~~~lL~~~~~~~~~~d~ 544 (638)
+++.++.+++..+... .......+. ....+.... .+.-.+..|...++.+.
T Consensus 117 g~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~ 196 (527)
T KOG0505|consen 117 GYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHA 196 (527)
T ss_pred ccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccccccccc
Confidence 5566777665533221 011111111 011111110 11123447888888888
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHc
Q 006616 545 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVES 622 (638)
Q Consensus 545 ~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~ 622 (638)
.|.|+||.|+..|..++.++||+.|.+++.+|.+||||||.|+.-|+.+++++|+++|++.+.....|.|||.+|..-
T Consensus 197 rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~dee 274 (527)
T KOG0505|consen 197 RGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADEE 274 (527)
T ss_pred ccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhhh
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999998553
No 106
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.41 E-value=8.1e-13 Score=116.85 Aligned_cols=94 Identities=18% Similarity=0.357 Sum_probs=68.5
Q ss_pred EEEEEEe-ecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccccc
Q 006616 101 RQGYLSK-RSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA 179 (638)
Q Consensus 101 k~GyL~K-r~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (638)
-.|||.. +..+..++|+||||+|. ++.|+|++.+.+. ....+
T Consensus 3 ~~GfL~~~q~~~~~k~W~RRWFvL~-g~~L~y~k~p~d~------------------------------------~~~~P 45 (122)
T cd01263 3 YHGFLTMFEDTSGFGAWHRRWCALE-GGEIKYWKYPDDE------------------------------------KRKGP 45 (122)
T ss_pred cceeEEEEeccCCCCCceEEEEEEe-CCEEEEEcCCCcc------------------------------------ccCCc
Confidence 3799985 54456789999999998 8889998876541 11234
Q ss_pred cceeecccceeecC----CCCCCCcceEEEecC--C-----------------ee-EEEEeCCHHHHHHHHHHHHH
Q 006616 180 RHTVNLLTSTIKVD----ADQSDLRFCFRIISP--T-----------------KN-YTLQAESALDQMDWIEKITG 231 (638)
Q Consensus 180 ~~~i~l~~~~v~~~----~~~~~rr~cF~I~t~--~-----------------rt-~~lqA~se~e~~~Wi~ai~~ 231 (638)
.+.|+|..|.+... .+...|+++|.|... . ++ +.|.|+|.+|+++||.||++
T Consensus 46 lg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~ 121 (122)
T cd01263 46 TGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNS 121 (122)
T ss_pred eEEEEhhhCcccccccCChhhcCCCCeEEEEEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhc
Confidence 55688877776542 134567899998542 1 33 56899999999999999985
No 107
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.41 E-value=4.8e-13 Score=156.66 Aligned_cols=173 Identities=14% Similarity=0.111 Sum_probs=126.4
Q ss_pred cceecccccccchhhhhhhcccccCccccccchhccchh----------hHHHHHhhhhcc-------------ccCCCc
Q 006616 458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSL----------TLAKAMLLNEQT-------------SLERSS 514 (638)
Q Consensus 458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~----------~l~~~ll~~~~~-------------~~~~~~ 514 (638)
..|+.++..++..+++++|++.|+. +..|....+. .+...+...... ......
T Consensus 54 t~Lh~~A~~~~~~eiv~lLl~~g~~----~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~ 129 (743)
T TIGR00870 54 SALFVAAIENENLELTELLLNLSCR----GAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGI 129 (743)
T ss_pred hHHHHHHHhcChHHHHHHHHhCCCC----CCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCC
Confidence 4566577778888888999898871 1222111111 111111111100 011234
Q ss_pred ccccccccCCcccccccccCCCCCCCcCC--------------CCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCC
Q 006616 515 SSLTGNSSDRSSSGSLNLAGTSEGQTMDD--------------LEGCTLLHLACDSADIGMLELLLQYGANINATDSRGL 580 (638)
Q Consensus 515 ~~l~~~~~~~~~~~~~lL~~~~~~~~~~d--------------~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~ 580 (638)
++++.|...+...++.+|+..|++++..+ ..|.||||+|+..|+.+++++|+++|+|+|.+|..|+
T Consensus 130 TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~ 209 (743)
T TIGR00870 130 TALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGN 209 (743)
T ss_pred cHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhh
Confidence 55666666777888899999999998653 2599999999999999999999999999999999999
Q ss_pred cHHHHHHHhC---------CHHHHHHHHhCCCCC-------CCccCCCCCHHHHHHHcCCCcHHHHHHHhhC
Q 006616 581 TPLHRCILRG---------KAMFAKLLLTRGADP-------RAVNREGKTSLELAVESNFADSEVLAILSDS 636 (638)
Q Consensus 581 TpLh~A~~~g---------~~~~v~lLl~~gad~-------~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ 636 (638)
||||+|+..+ ...+.++++..+++. ++.|.+|.||||+|+..|+ .+++++|++.
T Consensus 210 T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~--~~l~~lLL~~ 279 (743)
T TIGR00870 210 TLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGR--IVLFRLKLAI 279 (743)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCC--ccHHHHHHHH
Confidence 9999999986 234666777665554 6779999999999999998 7899999983
No 108
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.38 E-value=4e-13 Score=103.07 Aligned_cols=55 Identities=45% Similarity=0.715 Sum_probs=24.1
Q ss_pred HHHcC-CCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHH
Q 006616 565 LLQYG-ANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELA 619 (638)
Q Consensus 565 Ll~~g-advn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A 619 (638)
||++| +++|.+|..|.||||+|+..|+.++|++|++.|++++.+|.+|+||||+|
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 45566 66777777777777777777777777777766777777777777777665
No 109
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.38 E-value=9.9e-13 Score=117.55 Aligned_cols=36 Identities=19% Similarity=0.458 Sum_probs=33.1
Q ss_pred CCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006616 197 SDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 232 (638)
Q Consensus 197 ~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~ 232 (638)
..+++.|.|.+++|+|.|.|+|+.++++||++|+.+
T Consensus 86 ~~~~~~~~i~t~~R~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 86 TGLRHGLKITNSNRSLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred CCCceEEEEEcCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 466899999999999999999999999999999853
No 110
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.37 E-value=1.4e-12 Score=128.41 Aligned_cols=116 Identities=34% Similarity=0.422 Sum_probs=104.0
Q ss_pred cccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCC-----HHHHHHHHHcCC---CCcccCCCCCcHHHHHHHhCC
Q 006616 520 NSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSAD-----IGMLELLLQYGA---NINATDSRGLTPLHRCILRGK 591 (638)
Q Consensus 520 ~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~-----~~~v~~Ll~~ga---dvn~~d~~G~TpLh~A~~~g~ 591 (638)
+...........++..+++++..|.+|.||||+|+..++ .+++++||+.|+ +.+.+|..|+||||+|+..|+
T Consensus 80 ~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~ 159 (235)
T COG0666 80 AASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGD 159 (235)
T ss_pred HHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCc
Confidence 333344445567889999999999999999999999999 999999999999 566669999999999999999
Q ss_pred HHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCC
Q 006616 592 AMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSH 637 (638)
Q Consensus 592 ~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~g 637 (638)
.+++++|++.|++++.++..|.|++++|+..++ .++++.|++.+
T Consensus 160 ~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~--~~~~~~l~~~~ 203 (235)
T COG0666 160 ADIVELLLEAGADPNSRNSYGVTALDPAAKNGR--IELVKLLLDKG 203 (235)
T ss_pred hHHHHHHHhcCCCCcccccCCCcchhhhcccch--HHHHHHHHhcC
Confidence 999999999999999999999999999999998 88999988753
No 111
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.37 E-value=1.5e-12 Score=106.14 Aligned_cols=88 Identities=22% Similarity=0.282 Sum_probs=82.8
Q ss_pred cHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcH
Q 006616 548 TLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADS 627 (638)
Q Consensus 548 TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~ 627 (638)
--+.|++.+|.++-|+..+..|.+||..- .|++|||||+-+|+.+++++|+..||+++.+|..|-|||..|+..|| .
T Consensus 4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH--~ 80 (117)
T KOG4214|consen 4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGH--R 80 (117)
T ss_pred hhHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhh--H
Confidence 35789999999999999999999998764 89999999999999999999999999999999999999999999999 8
Q ss_pred HHHHHHhhCCC
Q 006616 628 EVLAILSDSHG 638 (638)
Q Consensus 628 eiv~lLle~ga 638 (638)
++|++||..||
T Consensus 81 ~cVklLL~~GA 91 (117)
T KOG4214|consen 81 DCVKLLLQNGA 91 (117)
T ss_pred HHHHHHHHcCc
Confidence 89999999986
No 112
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.37 E-value=3.2e-12 Score=111.50 Aligned_cols=94 Identities=18% Similarity=0.386 Sum_probs=64.5
Q ss_pred EEEEEeecC----C---CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCC
Q 006616 102 QGYLSKRSS----N---LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHD 174 (638)
Q Consensus 102 ~GyL~Kr~~----~---~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 174 (638)
+|||..|.. + ..+.|++|||+|. ++.|+||+.+......
T Consensus 2 ~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~-~~~L~~ykd~~~~~~~--------------------------------- 47 (104)
T cd01253 2 EGSLERKHELESGGKKASNRSWDNVYGVLC-GQSLSFYKDEKMAAEN--------------------------------- 47 (104)
T ss_pred CceEeEEEEeecCCcccCCCCcceEEEEEe-CCEEEEEecCcccccC---------------------------------
Confidence 688873321 1 3568999999998 5677777754321000
Q ss_pred ccccccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHH
Q 006616 175 EKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITG 231 (638)
Q Consensus 175 ~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~ 231 (638)
......|++..+.+....+...++++|.|.+++ ++|+|||+|++|+.+||.+|++
T Consensus 48 --~~~~~~i~l~~~~i~~~~~~~k~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 48 --VHGEPPVDLTGAQCEVASDYTKKKHVFRLRLPDGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred --CCCCCcEeccCCEEEecCCcccCceEEEEEecCCCEEEEECCCHHHHHHHHHHHhc
Confidence 000113566666666544444677999998766 8999999999999999999975
No 113
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.36 E-value=6.5e-12 Score=110.62 Aligned_cols=102 Identities=19% Similarity=0.352 Sum_probs=73.6
Q ss_pred EEEEEEeec---------CCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCC
Q 006616 101 RQGYLSKRS---------SNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGG 171 (638)
Q Consensus 101 k~GyL~Kr~---------~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 171 (638)
|+|+|..+- ...++.|+++||||+ ++.|++|+.......+.
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~-g~~L~~yKDe~~~~~~~----------------------------- 51 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILR-GLVLYLQKDEHKPGKSL----------------------------- 51 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEE-CCEEEEEccCccccccc-----------------------------
Confidence 688887442 112458999999998 57777777653211100
Q ss_pred CCCccccccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616 172 VHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIAS 235 (638)
Q Consensus 172 ~~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~~ 235 (638)
........|.|..++..+..+...|++.|.|.+++ +.|.|||.+++||+.||.+|+.+.+.
T Consensus 52 ---~~~~~~~~Isi~~a~~~ia~dy~Kr~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~~ 113 (117)
T cd01230 52 ---SETELKNAISIHHALATRASDYSKKPHVFRLRTADWREFLFQTSSLKELQSWIERINVVAAA 113 (117)
T ss_pred ---ccccccceEEeccceeEeeccccCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 00112245777777766666777889999999997 89999999999999999999988753
No 114
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.34 E-value=6.1e-12 Score=111.74 Aligned_cols=117 Identities=34% Similarity=0.461 Sum_probs=101.4
Q ss_pred cccccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHH
Q 006616 516 SLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFA 595 (638)
Q Consensus 516 ~l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v 595 (638)
++..+...+....+..|+..+.+.+..+..|.||||+|+..++.+++++|+..|++++..+..|.||+|+|+..++.+++
T Consensus 10 ~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~ 89 (126)
T cd00204 10 PLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVV 89 (126)
T ss_pred HHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHHH
Confidence 34444444555667778888888888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHh
Q 006616 596 KLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILS 634 (638)
Q Consensus 596 ~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLl 634 (638)
++|+..|.+++..+..|.||+++|...++ .+++++|+
T Consensus 90 ~~L~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~Ll 126 (126)
T cd00204 90 KLLLKHGADVNARDKDGRTPLHLAAKNGH--LEVVKLLL 126 (126)
T ss_pred HHHHHcCCCCcccCCCCCCHHHHHHhcCC--HHHHHHhC
Confidence 99999999999999999999999999976 78888874
No 115
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.34 E-value=1.1e-11 Score=110.06 Aligned_cols=94 Identities=38% Similarity=0.586 Sum_probs=89.2
Q ss_pred CCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHH
Q 006616 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE 621 (638)
Q Consensus 542 ~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~ 621 (638)
.|.+|.||||+|+..++.+++++|+..|++++..+..|.||||+|+..+..+++++|++.|++++..+..|.||+|+|+.
T Consensus 3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~ 82 (126)
T cd00204 3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR 82 (126)
T ss_pred cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHhhCC
Q 006616 622 SNFADSEVLAILSDSH 637 (638)
Q Consensus 622 ~g~~d~eiv~lLle~g 637 (638)
.++ .+++++|++.|
T Consensus 83 ~~~--~~~~~~L~~~~ 96 (126)
T cd00204 83 NGN--LDVVKLLLKHG 96 (126)
T ss_pred cCc--HHHHHHHHHcC
Confidence 987 89999999865
No 116
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.34 E-value=2.5e-12 Score=97.92 Aligned_cols=54 Identities=44% Similarity=0.648 Sum_probs=39.8
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHH
Q 006616 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLL 599 (638)
Q Consensus 546 G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl 599 (638)
|+||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++||
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 678888888888888888888888888888888888888888888888888875
No 117
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.33 E-value=1.3e-12 Score=100.28 Aligned_cols=54 Identities=37% Similarity=0.439 Sum_probs=33.6
Q ss_pred cCCC-CCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHH
Q 006616 533 AGTS-EGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRC 586 (638)
Q Consensus 533 ~~~~-~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A 586 (638)
++.+ ++++..|..|.||||+||..|+.++|++||+.|++++.+|..|+||||+|
T Consensus 2 L~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 2 LEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp ----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 4455 89999999999999999999999999999999999999999999999997
No 118
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.32 E-value=9.4e-12 Score=105.75 Aligned_cols=82 Identities=16% Similarity=0.350 Sum_probs=64.6
Q ss_pred CCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccccccceeecccceeec
Q 006616 113 RGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKV 192 (638)
Q Consensus 113 ~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~ 192 (638)
.++||||||+|. ++.|+||+++.+. ...+...|++..|.|.+
T Consensus 17 ~K~~KrrwF~lk-~~~L~YyK~kee~-------------------------------------~~~p~i~lnl~gcev~~ 58 (106)
T cd01237 17 LKGYKQYWFTFR-DTSISYYKSKEDS-------------------------------------NGAPIGQLNLKGCEVTP 58 (106)
T ss_pred hhhheeEEEEEe-CCEEEEEccchhc-------------------------------------CCCCeEEEecCceEEcc
Confidence 467999999998 7889888876541 12233457888999886
Q ss_pred CCCCCCCcceEEEecCC----eeEEEEeCCHHHHHHHHHHHHHH
Q 006616 193 DADQSDLRFCFRIISPT----KNYTLQAESALDQMDWIEKITGV 232 (638)
Q Consensus 193 ~~~~~~rr~cF~I~t~~----rt~~lqA~se~e~~~Wi~ai~~~ 232 (638)
+..-..++|+|.+.+|. ++|+|.|+||+++.+||.|.+-|
T Consensus 59 dv~~~~~kf~I~l~~ps~~~~r~y~l~cdsEeqya~Wmaa~rla 102 (106)
T cd01237 59 DVNVAQQKFHIKLLIPTAEGMNEVWLRCDNEKQYAKWMAACRLA 102 (106)
T ss_pred cccccccceEEEEecCCccCCeEEEEECCCHHHHHHHHHHHHHh
Confidence 53223557999999988 99999999999999999998754
No 119
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.32 E-value=4.1e-12 Score=123.88 Aligned_cols=93 Identities=31% Similarity=0.431 Sum_probs=84.9
Q ss_pred CCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcc-cCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHH
Q 006616 539 QTMDDLEGCTLLHLACDSADIGMLELLLQYGANINA-TDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLE 617 (638)
Q Consensus 539 ~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~-~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~ 617 (638)
+|..|..|.|+|..|+..|++++|++||+.|+|||. ++..+.||||+|+..|+.++.++|++.|+.+...|.-|+|+-.
T Consensus 38 vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaq 117 (396)
T KOG1710|consen 38 VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQ 117 (396)
T ss_pred hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHH
Confidence 455677899999999999999999999999999996 4567999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcHHHHHHH
Q 006616 618 LAVESNFADSEVLAIL 633 (638)
Q Consensus 618 ~A~~~g~~d~eiv~lL 633 (638)
+|+--|+ .+.|.++
T Consensus 118 mAAFVG~--H~CV~iI 131 (396)
T KOG1710|consen 118 MAAFVGH--HECVAII 131 (396)
T ss_pred HHHHhcc--hHHHHHH
Confidence 9999998 6677654
No 120
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.31 E-value=5.4e-12 Score=139.24 Aligned_cols=143 Identities=25% Similarity=0.237 Sum_probs=112.4
Q ss_pred cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCC
Q 006616 458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE 537 (638)
Q Consensus 458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~ 537 (638)
.+||.||.+.|.+-| ++|++.|||||++-.... +. +...... ....
T Consensus 186 SaLHiAIv~~~~~~V-~lLl~~gADV~aRa~G~F-------------------------F~-~~dqk~~-------rk~T 231 (782)
T KOG3676|consen 186 SALHIAIVNRDAELV-RLLLAAGADVHARACGAF-------------------------FC-PDDQKAS-------RKST 231 (782)
T ss_pred chHHHHHHhccHHHH-HHHHHcCCchhhHhhccc-------------------------cC-ccccccc-------cccc
Confidence 579999998887765 567799999998532210 00 0000000 0000
Q ss_pred CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCC--CCCccCCCCCH
Q 006616 538 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD--PRAVNREGKTS 615 (638)
Q Consensus 538 ~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad--~~~~d~~g~Tp 615 (638)
+..-.=..|..||.+||..++.+++++|+++|||+|++|..|+|.||..+..-..++..++|++|++ ..++|..|.||
T Consensus 232 ~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTP 311 (782)
T KOG3676|consen 232 NYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTP 311 (782)
T ss_pred CCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCh
Confidence 1111113599999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred HHHHHHcCCCcHHHHHHHhhC
Q 006616 616 LELAVESNFADSEVLAILSDS 636 (638)
Q Consensus 616 L~~A~~~g~~d~eiv~lLle~ 636 (638)
|.+|+..|. .+|.+.+++.
T Consensus 312 LtLAaklGk--~emf~~ile~ 330 (782)
T KOG3676|consen 312 LTLAAKLGK--KEMFQHILER 330 (782)
T ss_pred HHHHHHhhh--HHHHHHHHHh
Confidence 999999998 8999988875
No 121
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=99.30 E-value=3.9e-11 Score=102.25 Aligned_cols=97 Identities=30% Similarity=0.638 Sum_probs=71.8
Q ss_pred eEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccccc
Q 006616 100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA 179 (638)
Q Consensus 100 ~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (638)
+++|||.++.......|++|||+|.+ +.|+||+...... ....
T Consensus 2 ~~~G~l~~~~~~~~~~~~~~~~~L~~-~~l~~~~~~~~~~------------------------------------~~~~ 44 (102)
T smart00233 2 IKEGWLYKKSGGKKKSWKKRYFVLFN-STLLYYKSEKAKK------------------------------------DYKP 44 (102)
T ss_pred ceeEEEEEeCCCccCCceEEEEEEEC-CEEEEEeCCCccc------------------------------------cCCC
Confidence 58999999965345689999999995 6666666543210 0122
Q ss_pred cceeecccceeecCCCCC--CCcceEEEecCCe-eEEEEeCCHHHHHHHHHHHHHHH
Q 006616 180 RHTVNLLTSTIKVDADQS--DLRFCFRIISPTK-NYTLQAESALDQMDWIEKITGVI 233 (638)
Q Consensus 180 ~~~i~l~~~~v~~~~~~~--~rr~cF~I~t~~r-t~~lqA~se~e~~~Wi~ai~~~i 233 (638)
...|.|..+.+....+.. ...++|.|.++++ +++|+|+|++|+..|+.+|+.++
T Consensus 45 ~~~i~l~~~~v~~~~~~~~~~~~~~f~l~~~~~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 45 KGSIDLSGITVREAPDPDSAKKPHCFEIKTADRRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred ceEEECCcCEEEeCCCCccCCCceEEEEEecCCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 344777777666543321 4579999999988 99999999999999999998765
No 122
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.28 E-value=1.1e-11 Score=142.26 Aligned_cols=86 Identities=40% Similarity=0.534 Sum_probs=50.4
Q ss_pred HHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHH
Q 006616 549 LLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSE 628 (638)
Q Consensus 549 pLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~e 628 (638)
.||.|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+ .+
T Consensus 85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~--~~ 162 (664)
T PTZ00322 85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGF--RE 162 (664)
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCc--HH
Confidence 3555555555555555555555555555555555555555555555555555555555555555555555555555 55
Q ss_pred HHHHHhhC
Q 006616 629 VLAILSDS 636 (638)
Q Consensus 629 iv~lLle~ 636 (638)
++++|+++
T Consensus 163 iv~~Ll~~ 170 (664)
T PTZ00322 163 VVQLLSRH 170 (664)
T ss_pred HHHHHHhC
Confidence 55555554
No 123
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.27 E-value=3.4e-12 Score=133.19 Aligned_cols=110 Identities=25% Similarity=0.307 Sum_probs=86.4
Q ss_pred CCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCC
Q 006616 523 DRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602 (638)
Q Consensus 523 ~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~g 602 (638)
.+....+.-.+..-.|+...+++|.||||-|+..||.+||+|||++|++||+.|.+||||||+|+.+++..+++.|++.|
T Consensus 560 eGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~G 639 (752)
T KOG0515|consen 560 EGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESG 639 (752)
T ss_pred cchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhcc
Confidence 33333444444445577778889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcc-CCCCCHHHHHHH--cCCCcHHHHHHHh
Q 006616 603 ADPRAVN-REGKTSLELAVE--SNFADSEVLAILS 634 (638)
Q Consensus 603 ad~~~~d-~~g~TpL~~A~~--~g~~d~eiv~lLl 634 (638)
+-+-+.. .++.||..-+-. .|+ ..+.++|-
T Consensus 640 aavfAsTlSDmeTa~eKCee~eeGY--~~CsqyL~ 672 (752)
T KOG0515|consen 640 AAVFASTLSDMETAAEKCEEMEEGY--DQCSQYLY 672 (752)
T ss_pred ceEEeeecccccchhhhcchhhhhH--HHHHHHHH
Confidence 8886654 567888776533 344 45666664
No 124
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=1.1e-11 Score=129.45 Aligned_cols=86 Identities=22% Similarity=0.295 Sum_probs=81.8
Q ss_pred HHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHH
Q 006616 551 HLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVL 630 (638)
Q Consensus 551 h~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv 630 (638)
.-|+..|.+++|+..+..--|+...+..|-||||-|++.||.+||++||+.|+|||+.|.+||||||+|+.+++ .-|+
T Consensus 555 LDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNn--v~~c 632 (752)
T KOG0515|consen 555 LDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNN--VPMC 632 (752)
T ss_pred HhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCc--hHHH
Confidence 34889999999999998888999999999999999999999999999999999999999999999999999987 8999
Q ss_pred HHHhhCCC
Q 006616 631 AILSDSHG 638 (638)
Q Consensus 631 ~lLle~ga 638 (638)
+.|+++||
T Consensus 633 kqLVe~Ga 640 (752)
T KOG0515|consen 633 KQLVESGA 640 (752)
T ss_pred HHHHhccc
Confidence 99999997
No 125
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.25 E-value=7.4e-12 Score=136.40 Aligned_cols=154 Identities=16% Similarity=0.103 Sum_probs=125.5
Q ss_pred cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCC
Q 006616 458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE 537 (638)
Q Consensus 458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~ 537 (638)
..|++|+.+|+... .++|++..+-++..+..+ .+.++.+...+...++.+++..+.
T Consensus 51 Talhha~Lng~~~i-s~llle~ea~ldl~d~kg-----------------------~~plhlaaw~g~~e~vkmll~q~d 106 (854)
T KOG0507|consen 51 TLLHHAVLNGQNQI-SKLLLDYEALLDLCDTKG-----------------------ILPLHLAAWNGNLEIVKMLLLQTD 106 (854)
T ss_pred hHHHHHHhcCchHH-HHHHhcchhhhhhhhccC-----------------------cceEEehhhcCcchHHHHHHhccc
Confidence 56888888777664 466667666665555333 455566666666677777777778
Q ss_pred CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC--------CCcc
Q 006616 538 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP--------RAVN 609 (638)
Q Consensus 538 ~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~--------~~~d 609 (638)
.+|.....|.||||.||..|+.+++.+||.+|+|+-.+|..+.|+|.+|++.|..++|++|+.....+ ..++
T Consensus 107 ~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~ 186 (854)
T KOG0507|consen 107 ILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRP 186 (854)
T ss_pred CCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998763221 2455
Q ss_pred CCCCCHHHHHHHcCCCcHHHHHHHhhCC
Q 006616 610 REGKTSLELAVESNFADSEVLAILSDSH 637 (638)
Q Consensus 610 ~~g~TpL~~A~~~g~~d~eiv~lLle~g 637 (638)
..+.+|||+|+.+|| .++++.|+++|
T Consensus 187 ~~~~~plHlaakngh--~~~~~~ll~ag 212 (854)
T KOG0507|consen 187 FPAIYPLHLAAKNGH--VECMQALLEAG 212 (854)
T ss_pred CCCcCCcchhhhcch--HHHHHHHHhcC
Confidence 677889999999999 88999999987
No 126
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.23 E-value=2.3e-11 Score=92.58 Aligned_cols=54 Identities=35% Similarity=0.529 Sum_probs=46.5
Q ss_pred CCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHh
Q 006616 579 GLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILS 634 (638)
Q Consensus 579 G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLl 634 (638)
|+||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+ .+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~--~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGN--IDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT---HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccC--HHHHHHHC
Confidence 7899999999999999999999999999999999999999999998 99999986
No 127
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.19 E-value=2.5e-10 Score=98.34 Aligned_cols=100 Identities=24% Similarity=0.336 Sum_probs=74.3
Q ss_pred eeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccc
Q 006616 99 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 178 (638)
Q Consensus 99 ~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (638)
-+++|-|.|.. ++.-+.|||+|-+|-++| -+..-. .....
T Consensus 4 li~eG~L~K~~---rk~~~~R~ffLFnD~LvY-~~~~~~------------------------------------~~~~~ 43 (104)
T cd01218 4 LVGEGVLTKMC---RKKPKQRQFFLFNDILVY-GNIVIS------------------------------------KKKYN 43 (104)
T ss_pred EEecCcEEEee---cCCCceEEEEEecCEEEE-EEeecC------------------------------------Cceee
Confidence 47899999984 567888999999875555 221000 00112
Q ss_pred ccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 006616 179 ARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLS 238 (638)
Q Consensus 179 ~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~ 238 (638)
....++|..+.|....++.+.+++|.|.++.++|+++|+|++|+.+||++|+.+|..++.
T Consensus 44 ~~~~i~L~~~~v~~~~d~~~~~n~f~I~~~~kSf~v~A~s~~eK~eWl~~i~~ai~~~l~ 103 (104)
T cd01218 44 KQHILPLEGVQVESIEDDGIERNGWIIKTPTKSFAVYAATETEKREWMLHINKCVTDLLE 103 (104)
T ss_pred EeeEEEccceEEEecCCcccccceEEEecCCeEEEEEcCCHHHHHHHHHHHHHHHHHHhc
Confidence 234467777777654444456899999999999999999999999999999999988763
No 128
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.19 E-value=2.8e-11 Score=139.03 Aligned_cols=100 Identities=25% Similarity=0.364 Sum_probs=91.4
Q ss_pred cCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhC
Q 006616 522 SDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601 (638)
Q Consensus 522 ~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~ 601 (638)
..+....+.+|+..|+++|..|..|.||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++
T Consensus 91 ~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~ 170 (664)
T PTZ00322 91 ASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRH 170 (664)
T ss_pred HcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhC
Confidence 34555667778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -------CCCCCCccCCCCCHHHHHHH
Q 006616 602 -------GADPRAVNREGKTSLELAVE 621 (638)
Q Consensus 602 -------gad~~~~d~~g~TpL~~A~~ 621 (638)
|++++..+..|.+|+..+..
T Consensus 171 ~~~~~~~ga~~~~~~~~g~~~~~~~~~ 197 (664)
T PTZ00322 171 SQCHFELGANAKPDSFTGKPPSLEDSP 197 (664)
T ss_pred CCcccccCCCCCccccCCCCccchhhh
Confidence 99999999999988776643
No 129
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.15 E-value=6.1e-11 Score=131.05 Aligned_cols=93 Identities=29% Similarity=0.403 Sum_probs=85.5
Q ss_pred CCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccC-----------------------CCCCcHHHHHHHhCCHHHHHHHHh
Q 006616 544 LEGCTLLHLACDSADIGMLELLLQYGANINATD-----------------------SRGLTPLHRCILRGKAMFAKLLLT 600 (638)
Q Consensus 544 ~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d-----------------------~~G~TpLh~A~~~g~~~~v~lLl~ 600 (638)
..|.||||+|+.+.+.++|++||+.||||+++- +.|..||.+||..++.+|+++|++
T Consensus 182 Y~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~ 261 (782)
T KOG3676|consen 182 YYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA 261 (782)
T ss_pred hcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence 469999999999999999999999999998641 357899999999999999999999
Q ss_pred CCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616 601 RGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 601 ~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga 638 (638)
+|||++++|.+|+|.||..+..-. .++..+++++||
T Consensus 262 ~gAd~~aqDS~GNTVLH~lVi~~~--~~My~~~L~~ga 297 (782)
T KOG3676|consen 262 HGADPNAQDSNGNTVLHMLVIHFV--TEMYDLALELGA 297 (782)
T ss_pred cCCCCCccccCCChHHHHHHHHHH--HHHHHHHHhcCC
Confidence 999999999999999999988844 889999999986
No 130
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.13 E-value=3.1e-10 Score=111.64 Aligned_cols=96 Identities=35% Similarity=0.504 Sum_probs=89.2
Q ss_pred cCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCC-----HHHHHHHHhCCC---CCCCccCCC
Q 006616 541 MDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGK-----AMFAKLLLTRGA---DPRAVNREG 612 (638)
Q Consensus 541 ~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~-----~~~v~lLl~~ga---d~~~~d~~g 612 (638)
..+..+.+++|.++..+...++.+|+..|++++.+|..|.||||+|+..++ .+++++||+.|+ +.+.+|..|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g 147 (235)
T COG0666 68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG 147 (235)
T ss_pred cCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCC
Confidence 445668999999999999999999999999999999999999999999999 999999999999 666779999
Q ss_pred CCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616 613 KTSLELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 613 ~TpL~~A~~~g~~d~eiv~lLle~ga 638 (638)
.||||+|+..|+ .+++++|++.|+
T Consensus 148 ~tpl~~A~~~~~--~~~~~~ll~~~~ 171 (235)
T COG0666 148 NTPLHWAALNGD--ADIVELLLEAGA 171 (235)
T ss_pred CchhHHHHHcCc--hHHHHHHHhcCC
Confidence 999999999998 689999999875
No 131
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.12 E-value=3.1e-10 Score=95.60 Aligned_cols=94 Identities=37% Similarity=0.722 Sum_probs=67.3
Q ss_pred EEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccccc
Q 006616 101 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 180 (638)
Q Consensus 101 k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 180 (638)
++|||+++.......|++|||+|.++.+++ |....... ...+.
T Consensus 1 ~~G~l~~~~~~~~~~w~~~~~~L~~~~l~~-~~~~~~~~------------------------------------~~~~~ 43 (96)
T cd00821 1 KEGYLLKKTGKLRKGWKRRWFVLFNDLLLY-YKKKSSKK------------------------------------SYKPK 43 (96)
T ss_pred CcchhhhhhChhhCCccEEEEEEECCEEEE-EECCCCCc------------------------------------CCCCc
Confidence 379999885543368999999999554444 44432200 11233
Q ss_pred ceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHH
Q 006616 181 HTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITG 231 (638)
Q Consensus 181 ~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~ 231 (638)
..|+|..+.+....+..+.+++|.|.+.+ +.++|+|+|++|+..|+.+|+.
T Consensus 44 ~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 44 GSIPLSGAEVEESPDDSGRKNCFEIRTPDGRSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred ceEEcCCCEEEECCCcCCCCcEEEEecCCCcEEEEEeCCHHHHHHHHHHHhc
Confidence 45777777777644433357999999988 9999999999999999999975
No 132
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=99.07 E-value=5.2e-10 Score=99.82 Aligned_cols=106 Identities=23% Similarity=0.498 Sum_probs=62.9
Q ss_pred EEEEEEeec---------CCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCC
Q 006616 101 RQGYLSKRS---------SNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGG 171 (638)
Q Consensus 101 k~GyL~Kr~---------~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 171 (638)
|||||+.+- +...+.|+.-|+||+ ++.|++|+.......+. +.+.. .
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~-g~~L~~~k~~~~~~~~~---------~~~~~--------------~ 57 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQ-GGQLYFYKDEKSPASST---------PPDIQ--------------S 57 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---EEEEEEEEE-TTEEEEESSHHHHCCT----------BS-----------------S
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEE-CCEEEEEccCcccccCC---------ccccc--------------c
Confidence 789998542 113457999999998 77888887632100000 00000 0
Q ss_pred CCCccccccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHH
Q 006616 172 VHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGV 232 (638)
Q Consensus 172 ~~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~ 232 (638)
.....+...|+|..|...+..+-..|+|+|.|.+++ ..|.|||.|++||.+||.+|+-+
T Consensus 58 --~~~~~p~~~i~L~~a~a~~a~dY~Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~ 117 (119)
T PF15410_consen 58 --VENAKPDSSISLHHALAEIASDYTKRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYA 117 (119)
T ss_dssp --S--E-----EE-TT-EEEEETTBTTCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH
T ss_pred --cccCcceeEEEecceEEEeCcccccCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhh
Confidence 011223445888877777766777789999999986 79999999999999999999865
No 133
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=99.07 E-value=1.5e-10 Score=129.71 Aligned_cols=176 Identities=18% Similarity=0.155 Sum_probs=95.9
Q ss_pred ceecccccccchhhhhhhcccccCccccccch-------hccchhhHHHHHhhhhccccC-----CCcccccccccCCcc
Q 006616 459 QIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNEQTSLE-----RSSSSLTGNSSDRSS 526 (638)
Q Consensus 459 ~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~-------~~~~~~~l~~~ll~~~~~~~~-----~~~~~l~~~~~~~~~ 526 (638)
..+.-+|.+...+|+.+|+..|++-..++-.. .......+++.++..+..... ....+|.++..++..
T Consensus 826 t~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~ 905 (2131)
T KOG4369|consen 826 TMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQ 905 (2131)
T ss_pred ceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhcccc
Confidence 45556677777888888888887654433222 222233444444433211111 112233334444444
Q ss_pred cccccccCCCCCCCcCC-CCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC
Q 006616 527 SGSLNLAGTSEGQTMDD-LEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605 (638)
Q Consensus 527 ~~~~lL~~~~~~~~~~d-~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~ 605 (638)
...++|++.|.++|..- -+.+|+|-+|+..|+.++|.+||.+.+++..+-..|.|||+-++..|.+++-++||..|||+
T Consensus 906 ~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~ 985 (2131)
T KOG4369|consen 906 AATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADT 985 (2131)
T ss_pred HHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhccccc
Confidence 45555555555555432 23456666666666666666666666666666666666666666666666666666666666
Q ss_pred CCcc--CCCCCHHHHHHHcCCCcHHHHHHHhhC
Q 006616 606 RAVN--REGKTSLELAVESNFADSEVLAILSDS 636 (638)
Q Consensus 606 ~~~d--~~g~TpL~~A~~~g~~d~eiv~lLle~ 636 (638)
|+.- ....|+|-+++..|| ...|.+|+..
T Consensus 986 nasPvp~T~dtalti~a~kGh--~kfv~~lln~ 1016 (2131)
T KOG4369|consen 986 NASPVPNTWDTALTIPANKGH--TKFVPKLLNG 1016 (2131)
T ss_pred ccCCCCCcCCccceeecCCCc--hhhhHHhhCC
Confidence 5432 223456666666666 4556666543
No 134
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=99.06 E-value=1.8e-10 Score=128.96 Aligned_cols=174 Identities=18% Similarity=0.198 Sum_probs=117.9
Q ss_pred ecccccccchhhhhhhcccccCccccccchhc-------cchhhHHHHHhhhhcc----ccCCCcccccccccCCccccc
Q 006616 461 WEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSC-------ISSLTLAKAMLLNEQT----SLERSSSSLTGNSSDRSSSGS 529 (638)
Q Consensus 461 ~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~-------~~~~~l~~~ll~~~~~----~~~~~~~~l~~~~~~~~~~~~ 529 (638)
+..+|.|.+++++.+|+.+|+++...|..+.. .++..++..|+-++.+ ......++|..++.++...++
T Consensus 761 LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vv 840 (2131)
T KOG4369|consen 761 LTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVV 840 (2131)
T ss_pred ccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHH
Confidence 44567788888888999999999998887732 3444444444433222 111224455556666777777
Q ss_pred ccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCC--CCCcHHHHHHHhCCHHHHHHHHhCCCCCCC
Q 006616 530 LNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDS--RGLTPLHRCILRGKAMFAKLLLTRGADPRA 607 (638)
Q Consensus 530 ~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~--~G~TpLh~A~~~g~~~~v~lLl~~gad~~~ 607 (638)
.+|+..|++-..++....|||.+|...|.++++++||..|+.||.+.. .|-.||++|...||.+.++.||+.|-|+|.
T Consensus 841 elLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNa 920 (2131)
T KOG4369|consen 841 ELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINA 920 (2131)
T ss_pred HHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhcc
Confidence 788888888888877888888888888888888888888888776543 467777777777777777777777666664
Q ss_pred c-cCCCCCHHHHHHHcCCCcHHHHHHHhhC
Q 006616 608 V-NREGKTSLELAVESNFADSEVLAILSDS 636 (638)
Q Consensus 608 ~-d~~g~TpL~~A~~~g~~d~eiv~lLle~ 636 (638)
. ..+-+|+|-+|+-.|+ .|+|.+||.+
T Consensus 921 qIeTNrnTaltla~fqgr--~evv~lLLa~ 948 (2131)
T KOG4369|consen 921 QIETNRNTALTLALFQGR--PEVVFLLLAA 948 (2131)
T ss_pred ccccccccceeeccccCc--chHHHHHHHH
Confidence 3 2334566666666665 5566666554
No 135
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.04 E-value=4.6e-10 Score=112.20 Aligned_cols=105 Identities=23% Similarity=0.368 Sum_probs=74.3
Q ss_pred CcceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCc
Q 006616 96 KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE 175 (638)
Q Consensus 96 ~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 175 (638)
...++|+|||.||+.. .++|+.|||+|.++|.|.=|+.+.... +.
T Consensus 12 ~~~vvkEgWlhKrGE~-IknWRpRYF~l~~DG~~~Gyr~kP~~~----------------------------------~~ 56 (516)
T KOG0690|consen 12 QEDVVKEGWLHKRGEH-IKNWRPRYFLLFNDGTLLGYRSKPKEV----------------------------------QP 56 (516)
T ss_pred hhhhHHhhhHhhcchh-hhcccceEEEEeeCCceEeeccCCccC----------------------------------CC
Confidence 4567899999999554 568999999999998877666543211 11
Q ss_pred cccccceeecccceeecCCCCCCCcceEEEecCCe----eEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 006616 176 KSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTK----NYTLQAESALDQMDWIEKITGVIASLL 237 (638)
Q Consensus 176 ~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~r----t~~lqA~se~e~~~Wi~ai~~~i~~~~ 237 (638)
.+.+...+.+..|... ..+..|++.|-|..-+. ..+|-++|++++++|+.|||.+-..+.
T Consensus 57 ~p~pLNnF~v~~cq~m--~~erPrPntFiiRcLQWTTVIERTF~ves~~eRq~W~~AIq~vsn~l~ 120 (516)
T KOG0690|consen 57 TPEPLNNFMVRDCQTM--KTERPRPNTFIIRCLQWTTVIERTFYVESAEERQEWIEAIQAVSNRLK 120 (516)
T ss_pred Ccccccchhhhhhhhh--hccCCCCceEEEEeeeeeeeeeeeeecCCHHHHHHHHHHHHHHhhhhh
Confidence 1223334555556554 23457889999988764 356899999999999999998764443
No 136
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=99.02 E-value=3.2e-10 Score=118.46 Aligned_cols=119 Identities=26% Similarity=0.531 Sum_probs=100.6
Q ss_pred chHHHHHHcccCCcccccCCCCCC-CceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHH
Q 006616 306 EKPIDVLRRVCGNDRCADCGAPEP-DWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFA 384 (638)
Q Consensus 306 ~~~~~~~~~~~~n~~c~dC~~~~p-~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~ 384 (638)
|+.++.+.++|+|++|++|....+ +|+++.-|-++|..|+|.-|.| .--++|+|+.|- .++..++..++..||..+
T Consensus 13 ek~iR~l~kLP~NrrC~nCnsl~~~t~~~~~~g~fv~~~~sg~ls~l-~~ahRvksiSmt--tft~qevs~lQshgNq~~ 89 (524)
T KOG0702|consen 13 EKEIRRLLKLPENRRCINCNSLVAATYVVYTVGSFVCTMCSGLLSGL-NPAHRVKSISMT--TFTDQEVSFLQSHGNQVC 89 (524)
T ss_pred HHHHHHHhcCCCCCceeeccccccceEEEeeccceeeeccchhhccC-CCccccceeeee--eccccchHHHhhcchhhh
Confidence 788999999999999999999988 9999999999999999999999 567899999998 689999999999999999
Q ss_pred HHHHHhhhccccccccCCCCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhhhccCCCC
Q 006616 385 NSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKD 449 (638)
Q Consensus 385 n~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~fv~~~~~ 449 (638)
..||-..+.-... .-|...++...|+ |++.||+.++|......
T Consensus 90 k~i~fkl~D~q~S---------------------~vPD~rn~~~~ke-f~q~~y~~kr~~v~~n~ 132 (524)
T KOG0702|consen 90 KEIWFKLFDFQRS---------------------NVPDSRNPQKVKE-FQQEKYVKKRYYVPKNQ 132 (524)
T ss_pred hhhhhcchhhhhc---------------------cCCCcccchhhHH-HHhhhhccceeecCccc
Confidence 9999877665322 2344444545555 99999999999866543
No 137
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.97 E-value=2.7e-10 Score=124.74 Aligned_cols=84 Identities=33% Similarity=0.491 Sum_probs=80.2
Q ss_pred CCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCC-CCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHH
Q 006616 539 QTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDS-RGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLE 617 (638)
Q Consensus 539 ~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~-~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~ 617 (638)
.|..|..|+|+||+|+..+...++++||++|+|++.+|. .|+||||.|+.+|+.+|+-+||.+|+.+.++|.+|.+||+
T Consensus 45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq 124 (1267)
T KOG0783|consen 45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ 124 (1267)
T ss_pred hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence 577899999999999999999999999999999999998 5999999999999999999999999999999999999999
Q ss_pred HHHHc
Q 006616 618 LAVES 622 (638)
Q Consensus 618 ~A~~~ 622 (638)
..++-
T Consensus 125 ~~~r~ 129 (1267)
T KOG0783|consen 125 FLSRV 129 (1267)
T ss_pred HHhhc
Confidence 98773
No 138
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.97 E-value=4.7e-09 Score=88.94 Aligned_cols=91 Identities=30% Similarity=0.536 Sum_probs=62.0
Q ss_pred EEEEEeecCCC---CCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccc
Q 006616 102 QGYLSKRSSNL---RGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 178 (638)
Q Consensus 102 ~GyL~Kr~~~~---~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (638)
+|||.++.... .+.|++|||+|.++ .|+||+.+..... .
T Consensus 2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~-~l~~~~~~~~~~~----------------------------------~--- 43 (99)
T cd00900 2 EGYLLKLGSDDVSKGKRWKRRWFFLFDD-GLLLYKSDDKKEI----------------------------------K--- 43 (99)
T ss_pred ccEEEEeCCCccccccCceeeEEEEECC-EEEEEEcCCCCcC----------------------------------C---
Confidence 69999886653 36899999999854 5555555432100 0
Q ss_pred ccceeecccceeecCCCCCCCcceEEEecC---CeeEEEEeCCHHHHHHHHHHHHH
Q 006616 179 ARHTVNLLTSTIKVDADQSDLRFCFRIISP---TKNYTLQAESALDQMDWIEKITG 231 (638)
Q Consensus 179 ~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~---~rt~~lqA~se~e~~~Wi~ai~~ 231 (638)
...+.+....+....+..+.++||.|+.. .+.+.|+|+|++|++.|+.+|+.
T Consensus 44 -~~~~~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~al~~ 98 (99)
T cd00900 44 -PGSIPLSEISVEEDPDGSDDPNCFAIVTKDRGRRVFVFQADSEEEAQEWVEALQQ 98 (99)
T ss_pred -CCEEEccceEEEECCCCCCCCceEEEECCCCCcEEEEEEcCCHHHHHHHHHHHhc
Confidence 01233333334332222246799999998 68999999999999999999975
No 139
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.93 E-value=7e-09 Score=85.41 Aligned_cols=90 Identities=22% Similarity=0.352 Sum_probs=63.0
Q ss_pred eeEEEEEEeecCCC-CCCceeeEEEEecCceEEEEecCC-CCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616 99 TIRQGYLSKRSSNL-RGDWKRRFFVLDSRGMLYYYRKQC-SKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 176 (638)
Q Consensus 99 ~~k~GyL~Kr~~~~-~~~WkrRwfvL~~~~~l~y~~~~~-~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 176 (638)
+|+.|||....-+. ++.=|+|||||.. ..||||+... +.+++.
T Consensus 1 virkgwl~~~n~~~m~ggsK~~WFVLt~-~~L~wykd~eeKE~kyi---------------------------------- 45 (110)
T cd01256 1 VIRKGWLSISNVGIMKGGSKDYWFVLTS-ESLSWYKDDEEKEKKYM---------------------------------- 45 (110)
T ss_pred CeeeeeEEeeccceecCCCcceEEEEec-ceeeeecccccccccce----------------------------------
Confidence 36889999876554 4468999999994 5566666543 333332
Q ss_pred ccccceeecccceeecCCCC--CCCcceEEEecCC--------eeEEEEeCCHHHHHHHHHHHH
Q 006616 177 SAARHTVNLLTSTIKVDADQ--SDLRFCFRIISPT--------KNYTLQAESALDQMDWIEKIT 230 (638)
Q Consensus 177 ~~~~~~i~l~~~~v~~~~~~--~~rr~cF~I~t~~--------rt~~lqA~se~e~~~Wi~ai~ 230 (638)
|.|....++- -++ ..++|||+|..|+ ++..|.|+|.+|.+.|...+-
T Consensus 46 ------lpLdnLk~Rd-ve~gf~sk~~~FeLfnpd~rnvykd~k~lel~~~~~e~vdswkasfl 102 (110)
T cd01256 46 ------LPLDGLKLRD-IEGGFMSRNHKFALFYPDGRNVYKDYKQLELGCETLEEVDSWKASFL 102 (110)
T ss_pred ------eeccccEEEe-ecccccCCCcEEEEEcCcccccccchheeeecCCCHHHHHHHHHHHH
Confidence 4444444442 223 5678999999875 578899999999999987653
No 140
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.90 E-value=5.1e-09 Score=109.09 Aligned_cols=93 Identities=30% Similarity=0.404 Sum_probs=84.2
Q ss_pred cCCCCCCcH------HHHHHHhCCHHHHHHHHHcCCCCcccCC-CCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCC
Q 006616 541 MDDLEGCTL------LHLACDSADIGMLELLLQYGANINATDS-RGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGK 613 (638)
Q Consensus 541 ~~d~~G~Tp------Lh~Aa~~g~~~~v~~Ll~~gadvn~~d~-~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~ 613 (638)
.+|.+|.|+ ||..++.|+++.+-.||..||++|..+. .|.||||.|+..|+...+++|+-+|||++..|.+|.
T Consensus 122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~Gm 201 (669)
T KOG0818|consen 122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGM 201 (669)
T ss_pred CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCC
Confidence 456667665 8999999999999999999999999886 599999999999999999999999999999999999
Q ss_pred CHHHHHHHcCCCcHHHHHHHhh
Q 006616 614 TSLELAVESNFADSEVLAILSD 635 (638)
Q Consensus 614 TpL~~A~~~g~~d~eiv~lLle 635 (638)
||+.+|-..|| .++.+-|+|
T Consensus 202 tP~~~AR~~gH--~~laeRl~e 221 (669)
T KOG0818|consen 202 TPVDYARQGGH--HELAERLVE 221 (669)
T ss_pred cHHHHHHhcCc--hHHHHHHHH
Confidence 99999999999 677777765
No 141
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=98.89 E-value=4.9e-09 Score=102.70 Aligned_cols=91 Identities=26% Similarity=0.256 Sum_probs=83.8
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCc-cCCCCCHHHHHHHcCC
Q 006616 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAV-NREGKTSLELAVESNF 624 (638)
Q Consensus 546 G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~-d~~g~TpL~~A~~~g~ 624 (638)
-..||.-++..+..+-...||..--++|.+|..|.++|..|+..|+.++|++||+.|||+|.. +..+.||||+|+..|+
T Consensus 12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn 91 (396)
T KOG1710|consen 12 PKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGN 91 (396)
T ss_pred hhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCC
Confidence 467999999999999999999876779999999999999999999999999999999999975 4678999999999998
Q ss_pred CcHHHHHHHhhCCC
Q 006616 625 ADSEVLAILSDSHG 638 (638)
Q Consensus 625 ~d~eiv~lLle~ga 638 (638)
.+|..+|+++||
T Consensus 92 --~dvcrllldaGa 103 (396)
T KOG1710|consen 92 --QDVCRLLLDAGA 103 (396)
T ss_pred --chHHHHHHhccC
Confidence 779999999996
No 142
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=98.83 E-value=2.7e-08 Score=106.17 Aligned_cols=113 Identities=19% Similarity=0.348 Sum_probs=83.0
Q ss_pred CCCcceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCC
Q 006616 94 KGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVH 173 (638)
Q Consensus 94 ~~~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 173 (638)
++....||||-|+|.+.+ ..+-..||++|-++-+||...+. ...+
T Consensus 267 ~PsreLiKEG~l~Kis~k-~~~~qeRylfLFNd~~lyc~~r~--~~~~-------------------------------- 311 (623)
T KOG4424|consen 267 SPSRELIKEGQLQKISAK-NGTTQERYLFLFNDILLYCKPRK--RLPG-------------------------------- 311 (623)
T ss_pred CcHHHHhhccceeeeecc-CCCcceeEEEEehhHHHhhhhhh--hccc--------------------------------
Confidence 344567899999999765 67899999999987767643322 1111
Q ss_pred CccccccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHHhccCCCC
Q 006616 174 DEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPE 243 (638)
Q Consensus 174 ~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~~~~~ 243 (638)
.+...+..+++..+.++- .+...+++.|.|..+++...|||.|+++.++||++|+.+|..+.+...+.
T Consensus 312 -~k~~~r~~~s~~~~~v~~-~~~~~~~~tF~~~G~~r~vel~a~t~~ek~eWv~~I~~~Id~~kq~~eTf 379 (623)
T KOG4424|consen 312 -SKYEVRARCSISHMQVQE-DDNEELPHTFILTGKKRGVELQARTEQEKKEWVQAIQDAIDKHKQCRETF 379 (623)
T ss_pred -ceeccceeeccCcchhcc-cccccCCceEEEecccceEEeecCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333445566666663 34446789999999999999999999999999999999999888775443
No 143
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.82 E-value=8.3e-09 Score=85.71 Aligned_cols=97 Identities=22% Similarity=0.419 Sum_probs=61.6
Q ss_pred EEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccccc
Q 006616 101 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 180 (638)
Q Consensus 101 k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 180 (638)
++|||+|+++...|.||||||+|.+ +--|.--... + .+.++.+.
T Consensus 4 ~sGyL~k~Gg~~~KkWKKRwFvL~q--vsQYtfamcs------------------------------y----~ekks~P~ 47 (117)
T cd01234 4 HCGYLYAIGKNVWKKWKKRFFVLVQ--VSQYTFAMCS------------------------------Y----REKKAEPT 47 (117)
T ss_pred eeEEEEeccchhhhhhheeEEEEEc--hhHHHHHHHh------------------------------h----hhhcCCch
Confidence 7999999977678899999999974 2211100000 0 01112222
Q ss_pred ceeecccceeecCCCC----------CCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616 181 HTVNLLTSTIKVDADQ----------SDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI 233 (638)
Q Consensus 181 ~~i~l~~~~v~~~~~~----------~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i 233 (638)
+-+.|..-+|..-... ..-||-|..+-..-+..|..++|.|+.-||+|+-.+.
T Consensus 48 e~~qldGyTvDy~~~~~~~~~~~~~~~gg~~ff~avkegd~~~fa~~de~~r~lwvqa~yrat 110 (117)
T cd01234 48 EFIQLDGYTVDYMPESDPDPNSELSLQGGRHFFNAVKEGDELKFATDDENERHLWVQAMYRAT 110 (117)
T ss_pred hheeecceEEeccCCCCCCcccccccccchhhhheeccCcEEEEeccchHHHHHHHHHHHHHc
Confidence 3334443344321111 1346789888888899999999999999999997764
No 144
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.78 E-value=5.7e-09 Score=108.37 Aligned_cols=92 Identities=24% Similarity=0.351 Sum_probs=86.1
Q ss_pred CCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhC-CCCCCCccCCCCCHHHHHHH
Q 006616 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR-GADPRAVNREGKTSLELAVE 621 (638)
Q Consensus 543 d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~-gad~~~~d~~g~TpL~~A~~ 621 (638)
+.++..++++|+..|.+..++.+.-.|.|++..|.+.+|+||.|+..|+.+++++||+. +.+++.+|..|+|||+-|..
T Consensus 503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~ 582 (622)
T KOG0506|consen 503 ENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH 582 (622)
T ss_pred cccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence 34567889999999999999999999999999999999999999999999999999986 89999999999999999999
Q ss_pred cCCCcHHHHHHHhhC
Q 006616 622 SNFADSEVLAILSDS 636 (638)
Q Consensus 622 ~g~~d~eiv~lLle~ 636 (638)
.+| .+++++|.+.
T Consensus 583 F~h--~~v~k~L~~~ 595 (622)
T KOG0506|consen 583 FKH--KEVVKLLEEA 595 (622)
T ss_pred cCc--HHHHHHHHHH
Confidence 998 8999999764
No 145
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.72 E-value=1.2e-07 Score=82.67 Aligned_cols=106 Identities=16% Similarity=0.247 Sum_probs=72.4
Q ss_pred ceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCC-CCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616 98 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCS-KSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 176 (638)
Q Consensus 98 ~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~-~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 176 (638)
.-|++|-|.|-+.. .+.++.|+|+|-++-++|..++... ...|. . ...
T Consensus 3 elI~EG~L~ki~~~-~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~-----------------~-------------~~~ 51 (112)
T cd01261 3 EFIMEGTLTRVGPS-KKAKHERHVFLFDGLMVLCKSNHGQPRLPGA-----------------S-------------SAE 51 (112)
T ss_pred cccccCcEEEEecc-cCCcceEEEEEecCeEEEEEeccCccccccc-----------------c-------------cce
Confidence 34789999988543 4679999999996555554433221 11110 0 012
Q ss_pred ccccceeecccceeecCCCCCCCcceEEEecC-CeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616 177 SAARHTVNLLTSTIKVDADQSDLRFCFRIISP-TKNYTLQAESALDQMDWIEKITGVIA 234 (638)
Q Consensus 177 ~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~-~rt~~lqA~se~e~~~Wi~ai~~~i~ 234 (638)
....+.++|....|.-.++..+.++.|.|++. ++++.|+|.|++|..+||++|..+|.
T Consensus 52 y~~k~~~~l~~~~V~d~~d~~~~knaF~I~~~~~~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 52 YRLKEKFFMRKVDINDKPDSSEYKNAFEIILKDGNSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred EEEEEEEeeeeeEEEEcCCCcccCceEEEEcCCCCEEEEEECCHHHHHHHHHHHHHHhc
Confidence 23345577776666644444446899999985 68999999999999999999998874
No 146
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=98.71 E-value=6.7e-09 Score=115.45 Aligned_cols=100 Identities=28% Similarity=0.421 Sum_probs=71.6
Q ss_pred CCcceeEEEEEEeecCCCCCCceeeEEEEecC-ceEEEEecCC-CCCCCCCCccccccCcCcccCCccccccccccCCCC
Q 006616 95 GKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSR-GMLYYYRKQC-SKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGV 172 (638)
Q Consensus 95 ~~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~-~~l~y~~~~~-~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 172 (638)
.....+-+|||||| |...|.||.|||||+++ -.|+||.... .+|+|.+.+.-
T Consensus 1630 ~teNr~~eG~LyKr-GA~lK~Wk~RwFVLd~~khqlrYYd~~edt~pkG~IdLae------------------------- 1683 (1732)
T KOG1090|consen 1630 PTENRIPEGYLYKR-GAKLKLWKPRWFVLDPDKHQLRYYDDFEDTKPKGCIDLAE------------------------- 1683 (1732)
T ss_pred cccccCcccchhhc-chhhcccccceeEecCCccceeeecccccccccchhhhhh-------------------------
Confidence 33445669999999 55678999999999884 3577776653 34555432210
Q ss_pred CCccccccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616 173 HDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI 233 (638)
Q Consensus 173 ~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i 233 (638)
.+.+.+ + .+...|++--|+|.+.+|+|.|+|.+..+..+|++.||+++
T Consensus 1684 -------vesv~~----~--~~k~vdekgffdlktt~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1684 -------VESVAL----I--GPKTVDEKGFFDLKTTNRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred -------hhhhcc----c--CccccCccceeeeehhhHHHHHHhccchHHHHHHHHHHHhh
Confidence 011111 1 23455677779999999999999999999999999999876
No 147
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.65 E-value=5.1e-08 Score=83.03 Aligned_cols=100 Identities=22% Similarity=0.341 Sum_probs=56.3
Q ss_pred EEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccccc
Q 006616 101 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 180 (638)
Q Consensus 101 k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 180 (638)
.||+|+.|.. .++.||||||+|+.+|+.|+-+.....+.. +..+ ..++ ...
T Consensus 2 ~~g~LylK~~-gkKsWKk~~f~LR~SGLYy~~Kgksk~srd------------------L~cl--~~f~-----~~n--- 52 (114)
T cd01259 2 MEGPLYLKAD-GKKSWKKYYFVLRSSGLYYFPKEKTKNTRD------------------LACL--NLLH-----GHN--- 52 (114)
T ss_pred ccceEEEccC-CCccceEEEEEEeCCeeEEccCCCcCCHHH------------------HHHH--Hhcc-----cCc---
Confidence 4899999954 478999999999987765432222111100 0000 0000 000
Q ss_pred ceeecccceeecCCCCCCCcceEEEecCC------e-eEEEEeCCHHHHHHHHHHHHHHH
Q 006616 181 HTVNLLTSTIKVDADQSDLRFCFRIISPT------K-NYTLQAESALDQMDWIEKITGVI 233 (638)
Q Consensus 181 ~~i~l~~~~v~~~~~~~~rr~cF~I~t~~------r-t~~lqA~se~e~~~Wi~ai~~~i 233 (638)
.........+.. ..-.|||-|..+. + ...|+||+|+.+..||.||+-+.
T Consensus 53 -vY~~~~~kKk~k---APTd~~F~~K~~~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 53 -VYTGLGWRKKYK---SPTDYCFGFKAVGDQSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred -EEEEechhhccC---CCCCceEEEeccccCcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 000111111111 1236888887653 1 35799999999999999998553
No 148
>PF13606 Ank_3: Ankyrin repeat
Probab=98.58 E-value=6.8e-08 Score=63.63 Aligned_cols=28 Identities=43% Similarity=0.718 Sum_probs=17.2
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCCCCc
Q 006616 546 GCTLLHLACDSADIGMLELLLQYGANIN 573 (638)
Q Consensus 546 G~TpLh~Aa~~g~~~~v~~Ll~~gadvn 573 (638)
|+||||+||..|+.++|++||++|+|||
T Consensus 2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn 29 (30)
T PF13606_consen 2 GNTPLHLAASNGNIEIVKYLLEHGADVN 29 (30)
T ss_pred CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 5566666666666666666666666655
No 149
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=98.53 E-value=6e-07 Score=77.17 Aligned_cols=92 Identities=23% Similarity=0.360 Sum_probs=62.7
Q ss_pred CcceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCc
Q 006616 96 KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE 175 (638)
Q Consensus 96 ~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 175 (638)
...++++|++.|+.+ ++ +++|||+|.+...|+|.+......+
T Consensus 10 ge~Il~~g~v~K~kg-l~--~kkR~liLTd~PrL~Yvdp~~~~~K----------------------------------- 51 (104)
T PF14593_consen 10 GELILKQGYVKKRKG-LF--AKKRQLILTDGPRLFYVDPKKMVLK----------------------------------- 51 (104)
T ss_dssp T--EEEEEEEEEEET-TE--EEEEEEEEETTTEEEEEETTTTEEE-----------------------------------
T ss_pred CCeEEEEEEEEEeec-eE--EEEEEEEEccCCEEEEEECCCCeEC-----------------------------------
Confidence 456889999999954 44 8999999997779999877644222
Q ss_pred cccccceeecccc-eeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHH
Q 006616 176 KSAARHTVNLLTS-TIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASL 236 (638)
Q Consensus 176 ~~~~~~~i~l~~~-~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~ 236 (638)
+.|.+..+ ++... + .-.|.|.||+|+|+|...+ .+...|+++|+.++...
T Consensus 52 -----GeI~~~~~l~v~~k--~---~~~F~I~tp~RtY~l~d~~-~~A~~W~~~I~~~~~~~ 102 (104)
T PF14593_consen 52 -----GEIPWSKELSVEVK--S---FKTFFIHTPKRTYYLEDPE-GNAQQWVEAIEEVKKQY 102 (104)
T ss_dssp -----EEE--STT-EEEEC--S---SSEEEEEETTEEEEEE-TT-S-HHHHHHHHHHHHHHH
T ss_pred -----cEEecCCceEEEEc--c---CCEEEEECCCcEEEEECCC-CCHHHHHHHHHHHHHHh
Confidence 33444322 33321 1 2469999999999999844 56888999999988643
No 150
>PF13606 Ank_3: Ankyrin repeat
Probab=98.52 E-value=1.3e-07 Score=62.27 Aligned_cols=30 Identities=43% Similarity=0.575 Sum_probs=28.1
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHhCCCCCCC
Q 006616 578 RGLTPLHRCILRGKAMFAKLLLTRGADPRA 607 (638)
Q Consensus 578 ~G~TpLh~A~~~g~~~~v~lLl~~gad~~~ 607 (638)
+|+||||+|+..|+.++|++||++|+|+|.
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 589999999999999999999999999974
No 151
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.51 E-value=1.5e-07 Score=63.63 Aligned_cols=31 Identities=45% Similarity=0.642 Sum_probs=16.9
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCCCCcccC
Q 006616 546 GCTLLHLACDSADIGMLELLLQYGANINATD 576 (638)
Q Consensus 546 G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d 576 (638)
|.||||+|+..|+.+++++||++|++++.+|
T Consensus 2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d 32 (33)
T PF00023_consen 2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD 32 (33)
T ss_dssp SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence 4555555555555555555555555555544
No 152
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.49 E-value=1.1e-06 Score=74.98 Aligned_cols=40 Identities=23% Similarity=0.451 Sum_probs=34.7
Q ss_pred CCCCCCcceEEEecCC--eeEEEEeCCHHHHHHHHHHHHHHH
Q 006616 194 ADQSDLRFCFRIISPT--KNYTLQAESALDQMDWIEKITGVI 233 (638)
Q Consensus 194 ~~~~~rr~cF~I~t~~--rt~~lqA~se~e~~~Wi~ai~~~i 233 (638)
.+..|.++-|+|.... ++.+|-|+++.|++.|+.+|..-|
T Consensus 69 a~~kDiP~IF~I~~~~~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 69 ADAKEIPKIFQILYANEARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred cCcccCCeEEEEEeCCccceEEEEeCCchHHHHHHHHHHHhc
Confidence 4556789999999876 789999999999999999998765
No 153
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.48 E-value=3e-07 Score=97.60 Aligned_cols=85 Identities=32% Similarity=0.391 Sum_probs=63.9
Q ss_pred cHHHHHHHhCCHHHHHHHH--HcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCC
Q 006616 548 TLLHLACDSADIGMLELLL--QYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFA 625 (638)
Q Consensus 548 TpLh~Aa~~g~~~~v~~Ll--~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~ 625 (638)
-|||+++.....+-++.++ +.+..|+..|..|+||||+|+..|+.+.+++|+.+||++..+|.+|++|||.|+..|+
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~- 100 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGN- 100 (560)
T ss_pred cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCC-
Confidence 3588888777766554433 3356678888888888888888888888888888888888888888888888888886
Q ss_pred cHHHHHHHh
Q 006616 626 DSEVLAILS 634 (638)
Q Consensus 626 d~eiv~lLl 634 (638)
.+++..++
T Consensus 101 -~q~i~~vl 108 (560)
T KOG0522|consen 101 -EQIITEVL 108 (560)
T ss_pred -HHHHHHHH
Confidence 44444443
No 154
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.47 E-value=2.1e-07 Score=62.82 Aligned_cols=33 Identities=45% Similarity=0.609 Sum_probs=31.0
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccC
Q 006616 578 RGLTPLHRCILRGKAMFAKLLLTRGADPRAVNR 610 (638)
Q Consensus 578 ~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~ 610 (638)
+|+||||+|+..|+.+++++||++|++++.+|.
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 589999999999999999999999999999874
No 155
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.46 E-value=2.2e-06 Score=74.24 Aligned_cols=39 Identities=15% Similarity=0.429 Sum_probs=32.4
Q ss_pred CCCCCCcceEEEecC-------CeeEEEEeCCHHHHHHHHHHHHHH
Q 006616 194 ADQSDLRFCFRIISP-------TKNYTLQAESALDQMDWIEKITGV 232 (638)
Q Consensus 194 ~~~~~rr~cF~I~t~-------~rt~~lqA~se~e~~~Wi~ai~~~ 232 (638)
.+..|.++-|+|.+. ..+.+|-|+|+.|++.|+.||.+.
T Consensus 73 a~~kDiP~If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 73 ASKKDIPCIFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred cCcccCCeEEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 455688999999873 367889999999999999998753
No 156
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.42 E-value=5.4e-07 Score=95.94 Aligned_cols=87 Identities=29% Similarity=0.378 Sum_probs=77.2
Q ss_pred HHHHHHHhCCHHHHHHHHHcCCC--Ccc--cCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCC
Q 006616 549 LLHLACDSADIGMLELLLQYGAN--INA--TDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNF 624 (638)
Q Consensus 549 pLh~Aa~~g~~~~v~~Ll~~gad--vn~--~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~ 624 (638)
-|..|+...++..+-+||.+|.. +|. -+.+|+|+||+||..|++.+.++|+=+|+|+.++|.+|.|||.||-..|.
T Consensus 627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s 706 (749)
T KOG0705|consen 627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS 706 (749)
T ss_pred HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence 36667778888899999999854 333 45578999999999999999999999999999999999999999999998
Q ss_pred CcHHHHHHHhhCC
Q 006616 625 ADSEVLAILSDSH 637 (638)
Q Consensus 625 ~d~eiv~lLle~g 637 (638)
.|++.+|+.+|
T Consensus 707 --qec~d~llq~g 717 (749)
T KOG0705|consen 707 --QECIDVLLQYG 717 (749)
T ss_pred --HHHHHHHHHcC
Confidence 89999999987
No 157
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.38 E-value=1.9e-07 Score=97.28 Aligned_cols=89 Identities=21% Similarity=0.282 Sum_probs=76.7
Q ss_pred cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCC
Q 006616 458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE 537 (638)
Q Consensus 458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~ 537 (638)
-.++.|++.||+..+.++++ .|.|++.
T Consensus 508 i~~~~aa~~GD~~alrRf~l-~g~D~~~---------------------------------------------------- 534 (622)
T KOG0506|consen 508 INVMYAAKNGDLSALRRFAL-QGMDLET---------------------------------------------------- 534 (622)
T ss_pred hhhhhhhhcCCHHHHHHHHH-hcccccc----------------------------------------------------
Confidence 46777889999988888774 3666644
Q ss_pred CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCC
Q 006616 538 GQTMDDLEGCTLLHLACDSADIGMLELLLQY-GANINATDSRGLTPLHRCILRGKAMFAKLLLTRGA 603 (638)
Q Consensus 538 ~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~ga 603 (638)
.|.+.+|+||.||..|+++++++||.. +.+++.+|.+|+|||.-|...+|.+++++|-+.-.
T Consensus 535 ----~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~~ 597 (622)
T KOG0506|consen 535 ----KDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQY 597 (622)
T ss_pred ----cccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHHHHHHHHHhc
Confidence 456789999999999999999999986 89999999999999999999999999999987643
No 158
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.37 E-value=5.8e-07 Score=95.15 Aligned_cols=100 Identities=24% Similarity=0.398 Sum_probs=90.2
Q ss_pred CCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCC--CcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCC
Q 006616 534 GTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGAN--INATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNRE 611 (638)
Q Consensus 534 ~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad--vn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~ 611 (638)
..|.+.-.++.+..|.||+|+..|+-++|+++|++|.. +++.|..|.|+||-|+..++..++.+|++.||.+...|..
T Consensus 887 ~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~k 966 (1004)
T KOG0782|consen 887 LNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSK 966 (1004)
T ss_pred hcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccC
Confidence 45677778888999999999999999999999999864 7788899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHcCCCcHHHHHHHhh
Q 006616 612 GKTSLELAVESNFADSEVLAILSD 635 (638)
Q Consensus 612 g~TpL~~A~~~g~~d~eiv~lLle 635 (638)
|.||-.-|-..|- .++..+|-.
T Consensus 967 g~tp~eraqqa~d--~dlaayle~ 988 (1004)
T KOG0782|consen 967 GKTPQERAQQAGD--PDLAAYLES 988 (1004)
T ss_pred CCChHHHHHhcCC--chHHHHHhh
Confidence 9999999988874 778777753
No 159
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.33 E-value=1.7e-06 Score=74.19 Aligned_cols=97 Identities=16% Similarity=0.310 Sum_probs=58.5
Q ss_pred eEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccccc
Q 006616 100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA 179 (638)
Q Consensus 100 ~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (638)
+|||||.--+.. -+.|||+|++|+.+++-+|......+.-..+. .
T Consensus 1 lkEGWmVHyT~~-d~~rKRhYWrLDsK~Itlf~~e~~skyyKeIP----------------------------------L 45 (117)
T cd01239 1 LKEGWMVHYTSS-DNRRKKHYWRLDSKAITLYQEESGSRYYKEIP----------------------------------L 45 (117)
T ss_pred CccceEEEEecC-ccceeeeEEEecCCeEEEEEcCCCCeeeEEee----------------------------------h
Confidence 479999866443 36899999999976665554443332211110 0
Q ss_pred cceeecccceeecCCCCCCCcceEEEecCCeeEEEEeC--------------------CHHHHHHHHHHHHHH
Q 006616 180 RHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAE--------------------SALDQMDWIEKITGV 232 (638)
Q Consensus 180 ~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~--------------------se~e~~~Wi~ai~~~ 232 (638)
.+-+.+..+.... .......+||+|+|.+.+|+.+.+ ..+..+.|-+||++|
T Consensus 46 sEIl~V~~~~~~~-~~~~~~~hcFEi~T~~~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 46 AEILSVSSNNGDS-VLAKHPPHCFEIRTTTNVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred HHheEEeccCCCc-CCCCCCCcEEEEEecCEEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 1112222221111 112356899999999999999775 234568898888764
No 160
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.18 E-value=2.4e-06 Score=90.89 Aligned_cols=71 Identities=28% Similarity=0.378 Sum_probs=63.7
Q ss_pred cccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhC
Q 006616 531 NLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601 (638)
Q Consensus 531 lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~ 601 (638)
++......++..|..|+||||+|+..|+.+.++.|+.+||++..+|..||+|||-|+..|+..++..+|.+
T Consensus 40 l~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~ 110 (560)
T KOG0522|consen 40 LLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRH 110 (560)
T ss_pred HhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence 34446678888999999999999999999999999999999999999999999999999999888766654
No 161
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=2.7e-06 Score=90.46 Aligned_cols=109 Identities=25% Similarity=0.415 Sum_probs=68.1
Q ss_pred cCCCcceeEEEEEEee---------cCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccc
Q 006616 93 AKGKVQTIRQGYLSKR---------SSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRW 163 (638)
Q Consensus 93 ~~~~~~~~k~GyL~Kr---------~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~ 163 (638)
+.+.+.+-|+|+|..+ +...++.||.-|-+|+ |++.|+.+..-++....+
T Consensus 500 ~dpsa~~Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~Lk--G~vLYlqkDey~p~kals------------------- 558 (774)
T KOG0932|consen 500 PDPSAATYKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLK--GMVLYLQKDEYKPGKALS------------------- 558 (774)
T ss_pred CCCCchhhhhhhhhhhhhccccCCcCCccchhHHHHHHHHh--hheEEeeccccCcccchh-------------------
Confidence 3445566799999744 2334568999898995 555555554332211100
Q ss_pred cccccCCCCCCccccccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616 164 LSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIA 234 (638)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~ 234 (638)
..-....|.+.-+-..+..+-..++|.|.|.+.+ |.|.|||.|.+||++||..|+-+.+
T Consensus 559 ------------e~~lknavsvHHALAt~AtdY~KKp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vAA 618 (774)
T KOG0932|consen 559 ------------ESDLKNAVSVHHALATPATDYSKKPHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVAA 618 (774)
T ss_pred ------------hhhhhhhhhhhhhhcCCCcccccCCceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHHH
Confidence 0000111223222222334556788999999987 8999999999999999999985543
No 162
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=98.07 E-value=6.6e-06 Score=76.61 Aligned_cols=74 Identities=20% Similarity=0.170 Sum_probs=66.4
Q ss_pred CCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcC-CCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCcc
Q 006616 536 SEGQTMDDLEGCTLLHLACDSADIGMLELLLQYG-ANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN 609 (638)
Q Consensus 536 ~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~g-advn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d 609 (638)
+.++|.+|..|||||+.|+..|+.+.|.+|+.+| +.|...|..|.+++.+|-..|+.++|..|.+.-.+-...+
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~ 76 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPM 76 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcc
Confidence 5689999999999999999999999999999999 8999999999999999999999999999988755544433
No 163
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=98.07 E-value=2.6e-05 Score=86.92 Aligned_cols=100 Identities=19% Similarity=0.236 Sum_probs=61.4
Q ss_pred ceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616 98 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS 177 (638)
Q Consensus 98 ~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 177 (638)
...+.|||+|.+.. . .|++|||.+.++++...+...... .+. ..+.
T Consensus 376 Dv~~~G~l~k~~~~-~-~wk~ry~~l~~~~l~~~~~~~~~~-~~~-------------------------------~~~~ 421 (478)
T PTZ00267 376 DVTHGGYLYKYSSD-M-RWKKRYFYIGNGQLRISLSENPEN-DGV-------------------------------APKS 421 (478)
T ss_pred CcccceEEeccCCC-c-chhhheEEecCCceEEEecccccc-CCC-------------------------------CCcc
Confidence 34679999998654 3 499999999876665554432211 010 0000
Q ss_pred cccceeecccceeecCCCCCCCcceEEEecC-CeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616 178 AARHTVNLLTSTIKVDADQSDLRFCFRIISP-TKNYTLQAESALDQMDWIEKITGVI 233 (638)
Q Consensus 178 ~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~-~rt~~lqA~se~e~~~Wi~ai~~~i 233 (638)
... .++..+...+......+++||.|.+. .+.+.|+|+|++|+++||.+||.++
T Consensus 422 ~~l--~~~~~v~pv~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 422 VNL--ETVNDVFPVPEVYSQKHPNQLVLWFNNGQKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred ccH--HHhcccccccHHhcCCCCceEEEEecCCcEEEEecCChHHHHHHHHHHHHHh
Confidence 000 01111111111123346899999764 4778899999999999999999886
No 164
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=98.03 E-value=8.6e-06 Score=86.28 Aligned_cols=36 Identities=28% Similarity=0.599 Sum_probs=28.9
Q ss_pred CCcceeEEEEEEeecCCCCCCceeeEEEEecCceEEE
Q 006616 95 GKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYY 131 (638)
Q Consensus 95 ~~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y 131 (638)
..+.+.++|+||.|.. .+|.|||.||||+..|+.|.
T Consensus 313 s~~~pei~GfL~~K~d-gkKsWKk~yf~LR~SGLYys 348 (622)
T KOG3751|consen 313 SSSPPEIQGFLYLKED-GKKSWKKHYFVLRRSGLYYS 348 (622)
T ss_pred cCCCccccceeeeccc-ccccceeEEEEEecCcceEc
Confidence 3567789999999954 47899999999998775443
No 165
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=98.01 E-value=1.2e-05 Score=74.88 Aligned_cols=66 Identities=26% Similarity=0.280 Sum_probs=62.3
Q ss_pred CCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCC-CCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhC
Q 006616 569 GANINATDSRGLTPLHRCILRGKAMFAKLLLTRG-ADPRAVNREGKTSLELAVESNFADSEVLAILSDS 636 (638)
Q Consensus 569 gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~g-ad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ 636 (638)
+.++|++|..|||||+.|+..|..+.|.+|+.+| +.|.+.|..|.+++.+|-+.|+ .++|.+|-+.
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~--~~fvh~lfe~ 68 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGA--QAFVHSLFEN 68 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcCh--HHHHHHHHHH
Confidence 5789999999999999999999999999999999 9999999999999999999998 8899988764
No 166
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.01 E-value=1.4e-05 Score=81.56 Aligned_cols=75 Identities=28% Similarity=0.333 Sum_probs=64.8
Q ss_pred CcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHc
Q 006616 547 CTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVES 622 (638)
Q Consensus 547 ~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~ 622 (638)
.--|..||+.|..+.|+.|++.|.+||++|.....||.+|+..||.++|++||++||-...-..+|.-.+ +++.+
T Consensus 37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~-YgaLn 111 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCH-YGALN 111 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhh-hhhhh
Confidence 3458999999999999999999999999999999999999999999999999999998776666676543 44333
No 167
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.99 E-value=8.2e-05 Score=63.37 Aligned_cols=34 Identities=21% Similarity=0.500 Sum_probs=30.9
Q ss_pred cceEEEecCC---eeEEEEeCCHHHHHHHHHHHHHHH
Q 006616 200 RFCFRIISPT---KNYTLQAESALDQMDWIEKITGVI 233 (638)
Q Consensus 200 r~cF~I~t~~---rt~~lqA~se~e~~~Wi~ai~~~i 233 (638)
+++|.|++.+ ++|.|||.|+++.+.||++|+.+|
T Consensus 59 ~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 59 PLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 7999998764 699999999999999999999886
No 168
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.98 E-value=1.3e-05 Score=90.18 Aligned_cols=101 Identities=16% Similarity=0.318 Sum_probs=70.8
Q ss_pred ceeEEEEEEeec-CCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616 98 QTIRQGYLSKRS-SNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 176 (638)
Q Consensus 98 ~~~k~GyL~Kr~-~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 176 (638)
.+.-.|||++-. +..++.|.||||+|. +|.+.|.+.+.+.. .
T Consensus 989 dVEYrGFLtmfed~sgfGaWhRyWc~L~-gg~I~fWk~PdDEk------------------------------------r 1031 (1116)
T KOG3640|consen 989 DVEYRGFLTMFEDGSGFGAWHRYWCALH-GGEIKFWKYPDDEK------------------------------------R 1031 (1116)
T ss_pred ceeeeeeeeeeeccCCCchhhhhhHHhc-CCeeeeecCcchhc------------------------------------c
Confidence 355689998653 235678999999997 67777777665421 1
Q ss_pred ccccceeecccceeecCCC----CCCCcceEEEec---------C----Ce-eEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616 177 SAARHTVNLLTSTIKVDAD----QSDLRFCFRIIS---------P----TK-NYTLQAESALDQMDWIEKITGVIAS 235 (638)
Q Consensus 177 ~~~~~~i~l~~~~v~~~~~----~~~rr~cF~I~t---------~----~r-t~~lqA~se~e~~~Wi~ai~~~i~~ 235 (638)
-.+.+.|+|..|+-..-.. --.|++.|.|.+ | .| ...|.|++.+|++.|+.+|+.+..-
T Consensus 1032 K~Pig~IDLt~CTsq~ie~a~rdicar~ntFhie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~~ 1108 (1116)
T KOG3640|consen 1032 KVPIGQIDLTKCTSQSIEEARRDICARPNTFHIEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLKQ 1108 (1116)
T ss_pred cCcceeeehhhhhccccccchhhhccCCceeEEEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHHH
Confidence 2344568998887653211 125678899883 1 13 4679999999999999999988753
No 169
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.95 E-value=1.1e-05 Score=90.58 Aligned_cols=92 Identities=27% Similarity=0.234 Sum_probs=76.8
Q ss_pred CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC----------CC
Q 006616 538 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP----------RA 607 (638)
Q Consensus 538 ~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~----------~~ 607 (638)
++|+.|.-|+++|+.|+.+.+.+++++|++.+..+ .-+|.+|+..|..++|++++.+-... ..
T Consensus 54 ninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~ 126 (822)
T KOG3609|consen 54 NINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSP 126 (822)
T ss_pred chhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcc
Confidence 56677788999999999999999999999987766 34899999999999999999873322 12
Q ss_pred ccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616 608 VNREGKTSLELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 608 ~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga 638 (638)
.-..+.|||.+||..++ .||+++|++.|+
T Consensus 127 ~ft~ditPliLAAh~Nn--yEil~~Ll~kg~ 155 (822)
T KOG3609|consen 127 HFTPDITPLMLAAHLNN--FEILQCLLTRGH 155 (822)
T ss_pred cCCCCccHHHHHHHhcc--hHHHHHHHHcCC
Confidence 23467899999999988 999999999986
No 170
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.93 E-value=0.00011 Score=62.45 Aligned_cols=51 Identities=16% Similarity=0.249 Sum_probs=40.2
Q ss_pred eecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616 183 VNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI 233 (638)
Q Consensus 183 i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i 233 (638)
++|..-.|.--++...-+++|.|.++.+++.+||+|+++..+||..|++++
T Consensus 48 ~~L~~i~V~ni~D~~~~kNafki~t~~~s~i~qaes~~~K~eWl~~le~a~ 98 (100)
T cd01226 48 YSLNSVAVVNVKDRENAKKVLKLLIFPESRIYQCESARIKTEWFEELEQAK 98 (100)
T ss_pred EehHHeEEEecCCCcCcCceEEEEeCCccEEEEeCCHHHHHHHHHHHHHHh
Confidence 444433333224445668999999999999999999999999999999886
No 171
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.85 E-value=2.8e-05 Score=85.32 Aligned_cols=96 Identities=17% Similarity=0.397 Sum_probs=65.0
Q ss_pred eeEEEEEEeecCC----CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCC
Q 006616 99 TIRQGYLSKRSSN----LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHD 174 (638)
Q Consensus 99 ~~k~GyL~Kr~~~----~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 174 (638)
+.|+|.|.|+..+ .++.+|||||.|. +.-|.|.+.++..+.+.+.+
T Consensus 565 v~k~glm~kr~~gr~~~~~~~FKKryf~LT-~~~Ls~~Ksp~~q~~~~Ipl----------------------------- 614 (800)
T KOG2059|consen 565 VLKEGLMIKRAQGRGRFGKKNFKKRYFRLT-TEELSYAKSPGKQPIYTIPL----------------------------- 614 (800)
T ss_pred eecccceEeccccccchhhhhhhheEEEec-cceeEEecCCccCcccceeH-----------------------------
Confidence 3455555555433 2247889999998 56777777776655443211
Q ss_pred ccccccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616 175 EKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI 233 (638)
Q Consensus 175 ~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i 233 (638)
..| .+.-+.+....+.++||+|+..+|+.+|||.+-.|..+|+.+|..+.
T Consensus 615 ------~nI---~avEklee~sF~~knv~qVV~~drtly~Q~~n~vEandWldaL~kvs 664 (800)
T KOG2059|consen 615 ------SNI---RAVEKLEEKSFKMKNVFQVVHTDRTLYVQAKNCVEANDWLDALRKVS 664 (800)
T ss_pred ------HHH---HHHHHhhhhccCCCceEEEEecCcceeEecCCchHHHHHHHHHHHHh
Confidence 111 11112223345678999999999999999999999999999998763
No 172
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.79 E-value=8.3e-05 Score=61.32 Aligned_cols=84 Identities=20% Similarity=0.335 Sum_probs=59.9
Q ss_pred eEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccccc
Q 006616 100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA 179 (638)
Q Consensus 100 ~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (638)
++.|.+.||++ . .++||-++|.+...|+|.+......+|.
T Consensus 2 l~~g~v~Kr~g-l--f~kkR~LiLTd~PrL~yvdp~~~~~Kge------------------------------------- 41 (89)
T cd01262 2 LKIGAVKKRKG-L--FAKKRQLILTNGPRLIYVDPVKKVVKGE------------------------------------- 41 (89)
T ss_pred ceeeeeeehhc-c--ccceeeEEEecCceEEEEcCCcCeEEeE-------------------------------------
Confidence 57899999965 3 5799999999888898887654443332
Q ss_pred cceeecccc--eeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006616 180 RHTVNLLTS--TIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 232 (638)
Q Consensus 180 ~~~i~l~~~--~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~ 232 (638)
|.+... .+... + ...|.|.||+|+|+|. +.+.....|+++|+.+
T Consensus 42 ---Ip~s~~~l~v~~~--~---~~~F~I~Tp~rty~le-D~~~~a~~W~~~I~~~ 87 (89)
T cd01262 42 ---IPWSDVELRVEVK--N---SSHFFVHTPNKVYSFE-DPKGRASQWKKAIEDL 87 (89)
T ss_pred ---ecccccceEEEEe--c---CccEEEECCCceEEEE-CCCCCHHHHHHHHHHH
Confidence 222220 12221 1 3469999999999995 5568899999999865
No 173
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.72 E-value=5.1e-05 Score=77.52 Aligned_cols=57 Identities=21% Similarity=0.277 Sum_probs=53.9
Q ss_pred CcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616 580 LTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 580 ~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga 638 (638)
.--|..||+.|..+.|+.|++.|.++|.+|....+||.+|+.+|| .++|++||++||
T Consensus 37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGH--e~vvklLLenGA 93 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGH--EDVVKLLLENGA 93 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCc--HHHHHHHHHcCC
Confidence 345889999999999999999999999999999999999999999 789999999997
No 174
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.72 E-value=0.00016 Score=62.47 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=30.6
Q ss_pred CCcceEEEecCC--eeEEEEeCCHHHHHHHHHHHHH
Q 006616 198 DLRFCFRIISPT--KNYTLQAESALDQMDWIEKITG 231 (638)
Q Consensus 198 ~rr~cF~I~t~~--rt~~lqA~se~e~~~Wi~ai~~ 231 (638)
++.+||-|.+.. .+++|..|+..|+..|..||+.
T Consensus 72 ~~~~~F~irtg~~vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 72 QRDNCFLIRTGTQVENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred CCceEEEEEcCCceeeEEEEecCHHHHHHHHHHHhc
Confidence 567999999987 5899999999999999999874
No 175
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.67 E-value=0.0007 Score=58.42 Aligned_cols=94 Identities=16% Similarity=0.245 Sum_probs=63.1
Q ss_pred eEEEEEEeecCCCCCCc-eeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccc
Q 006616 100 IRQGYLSKRSSNLRGDW-KRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 178 (638)
Q Consensus 100 ~k~GyL~Kr~~~~~~~W-krRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (638)
|.+|=|.+.+.. +.| +.|+|+|-++.++|+.+.... + ....
T Consensus 3 i~~Gel~~~s~~--~g~~q~R~~FLFD~~LI~CKkd~~r---~---------------------------------~~~~ 44 (109)
T cd01224 3 FLQGEATRQKQN--KGWNSSRVLFLFDHQMVLCKKDLIR---R---------------------------------DHLY 44 (109)
T ss_pred eEeeeEEEEecc--cCCcccEEEEEecceEEEEeccccc---C---------------------------------CcEE
Confidence 578988888532 233 368999985555554332111 0 1123
Q ss_pred ccceeecccceeecCCCCCCC------cceEEEecCC--eeEEEEeCCHHHHHHHHHHHHH
Q 006616 179 ARHTVNLLTSTIKVDADQSDL------RFCFRIISPT--KNYTLQAESALDQMDWIEKITG 231 (638)
Q Consensus 179 ~~~~i~l~~~~v~~~~~~~~r------r~cF~I~t~~--rt~~lqA~se~e~~~Wi~ai~~ 231 (638)
-.+.|++..+.|...++..+. ++.|.|+..+ ..|.|.|.|+++...||+||..
T Consensus 45 yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 45 YKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSESTDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred EEEEEEcccEEEEECCCCccccCCceeEEEEEEEEcCCCeEEEEEECCHHHHHHHHHHHHH
Confidence 455688888877754443322 6889999876 5799999999999999999853
No 176
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=97.65 E-value=3.7e-05 Score=85.38 Aligned_cols=75 Identities=28% Similarity=0.378 Sum_probs=64.1
Q ss_pred ceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCCC
Q 006616 459 QIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEG 538 (638)
Q Consensus 459 ~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~~ 538 (638)
+|+.++ ..+...+++.|+.+|+|++..|.+.
T Consensus 55 alH~~~-S~~k~~~l~wLlqhGidv~vqD~ES------------------------------------------------ 85 (1267)
T KOG0783|consen 55 ALHIAV-SENKNSFLRWLLQHGIDVFVQDEES------------------------------------------------ 85 (1267)
T ss_pred eeeeee-ccchhHHHHHHHhcCceeeeccccc------------------------------------------------
Confidence 455444 4556678888989999998887654
Q ss_pred CCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHh
Q 006616 539 QTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILR 589 (638)
Q Consensus 539 ~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~ 589 (638)
|+||||-|+..|+++++-+||.+|+.+..+|..|..||.+-++-
T Consensus 86 -------G~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~~r~ 129 (1267)
T KOG0783|consen 86 -------GYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFLSRV 129 (1267)
T ss_pred -------cchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHHHhhc
Confidence 99999999999999999999999999999999999999987763
No 177
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=97.63 E-value=8.4e-05 Score=79.23 Aligned_cols=87 Identities=21% Similarity=0.216 Sum_probs=74.7
Q ss_pred HHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCC--CCCccCCCCCHHHHHHHcCCCcH
Q 006616 550 LHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD--PRAVNREGKTSLELAVESNFADS 627 (638)
Q Consensus 550 Lh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad--~~~~d~~g~TpL~~A~~~g~~d~ 627 (638)
|..|+..+.+--+.-+-.+|.++-.++.+-.+.||+|+..|+-++|+++|++|.. +++.|..|.|+||-|+..++ .
T Consensus 870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~--r 947 (1004)
T KOG0782|consen 870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRN--R 947 (1004)
T ss_pred HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcc--h
Confidence 4556666666555556667999989999999999999999999999999999864 57788999999999999987 7
Q ss_pred HHHHHHhhCCC
Q 006616 628 EVLAILSDSHG 638 (638)
Q Consensus 628 eiv~lLle~ga 638 (638)
.|+.+|+++||
T Consensus 948 ~vc~~lvdaga 958 (1004)
T KOG0782|consen 948 AVCQLLVDAGA 958 (1004)
T ss_pred HHHHHHHhcch
Confidence 89999999986
No 178
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=97.63 E-value=4.8e-05 Score=64.32 Aligned_cols=99 Identities=17% Similarity=0.357 Sum_probs=63.1
Q ss_pred eeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccc
Q 006616 99 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA 178 (638)
Q Consensus 99 ~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (638)
.|.+||+.|-++.....|++|||-|..|.+=+|......++ .++ .
T Consensus 3 cIvhGyi~KLGGPFls~WQ~Ry~~LfPNRLE~~~~~~~~~~------------------eLi-----------------~ 47 (116)
T cd01240 3 CIVHGYIKKLGGPFLSQWQTRYFKLYPNRLELYGESEANKP------------------ELI-----------------T 47 (116)
T ss_pred eEEeeehhhhCCHHHHHHHHHHheeCcceeeecccccccCC------------------cEE-----------------E
Confidence 47899999997766678999999999877655422211100 000 0
Q ss_pred ccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 006616 179 ARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASLL 237 (638)
Q Consensus 179 ~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~~~~ 237 (638)
. + ++. .|.++........|+.|...+ +.++|+++++-+..+|...|+++-..+.
T Consensus 48 M-~--~i~--~V~~e~~~iK~~~CI~ik~k~~~k~vlt~~d~i~l~qW~~elr~a~r~Sq 102 (116)
T cd01240 48 M-D--QIE--DVSVEFQQIKEENCILLKIRDEKKIVLTNSDEIELKQWKKELRDAHRESQ 102 (116)
T ss_pred e-e--hhh--hcchhheeeccCceEEEEEcCCceEEEecCCcHHHHHHHHHHHHHHHHHH
Confidence 0 0 000 111111111235899988865 6799999999999999999998875443
No 179
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=97.55 E-value=0.00086 Score=75.13 Aligned_cols=37 Identities=22% Similarity=0.424 Sum_probs=32.5
Q ss_pred CCcceEEEecC-CeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616 198 DLRFCFRIISP-TKNYTLQAESALDQMDWIEKITGVIA 234 (638)
Q Consensus 198 ~rr~cF~I~t~-~rt~~lqA~se~e~~~Wi~ai~~~i~ 234 (638)
+.+|.|-|... .|.+.|||.+++|++.||.+||.++.
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 453 NAAHVFAVAFKTGRRLLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred CCCcEEEEEecCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence 46899999765 58999999999999999999998863
No 180
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=97.53 E-value=4.8e-05 Score=81.27 Aligned_cols=107 Identities=21% Similarity=0.412 Sum_probs=68.2
Q ss_pred CCCcceeEEEEEEeecCC--CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCC
Q 006616 94 KGKVQTIRQGYLSKRSSN--LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGG 171 (638)
Q Consensus 94 ~~~~~~~k~GyL~Kr~~~--~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 171 (638)
++..+++.||-|..+.|. ..+.|+.|||+|.+-.++|...+...
T Consensus 730 n~~gqp~iEGQLKEKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~---------------------------------- 775 (851)
T KOG3723|consen 730 NQDGQPLIEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKD---------------------------------- 775 (851)
T ss_pred cCCCCchhcchhhhhccchhhhhhhccceEEecchhhhcccCCCCC----------------------------------
Confidence 344567889999866555 45899999999975444442222111
Q ss_pred CCCccccccceeeccc-ceeecCC---CCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 006616 172 VHDEKSAARHTVNLLT-STIKVDA---DQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSS 239 (638)
Q Consensus 172 ~~~~~~~~~~~i~l~~-~~v~~~~---~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~ 239 (638)
|... ..|+|.. -+||... ....-+-.|+|.|.+.||.|.|.+++..++|++.|+-+++.+...
T Consensus 776 --dS~~---~~IDl~~IRSVk~v~~kr~~rslpKAFEIFTAD~T~ILKaKDeKNAEEWlqCL~IavAHa~~r 842 (851)
T KOG3723|consen 776 --DSDD---CPIDLSKIRSVKAVAKKRRDRSLPKAFEIFTADKTYILKAKDEKNAEEWLQCLNIAVAHAKER 842 (851)
T ss_pred --CCCC---CCccHHHhhhHHHHHhhhhhcccchhhheeecCceEEeecccccCHHHHHHHHHHHHHHHHHH
Confidence 1111 1133321 1222111 111235679999999999999999999999999999888765543
No 181
>PLN02866 phospholipase D
Probab=97.45 E-value=0.00047 Score=80.26 Aligned_cols=36 Identities=25% Similarity=0.517 Sum_probs=33.4
Q ss_pred CCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616 198 DLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI 233 (638)
Q Consensus 198 ~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i 233 (638)
+.+|.|.|.+.+|++.|.|.|...++.|+.+|+.+.
T Consensus 272 ~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~ai~~~~ 307 (1068)
T PLN02866 272 PLRFGFKVTCGNRSIRLRTKSSAKVKDWVAAINDAG 307 (1068)
T ss_pred CCcceEEEecCceEEEEEECCHHHHHHHHHHHHHHH
Confidence 558999999999999999999999999999998875
No 182
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.32 E-value=0.0022 Score=57.03 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=27.3
Q ss_pred CCcceEEEe------cCCeeEEEEeCCHHHHHHHHHHHH
Q 006616 198 DLRFCFRII------SPTKNYTLQAESALDQMDWIEKIT 230 (638)
Q Consensus 198 ~rr~cF~I~------t~~rt~~lqA~se~e~~~Wi~ai~ 230 (638)
..++.|.|. ...+.+.|+|+|+.|+.+||+||.
T Consensus 81 ~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 81 GRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred CCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 347899996 334689999999999999999873
No 183
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=97.31 E-value=0.00022 Score=75.15 Aligned_cols=92 Identities=26% Similarity=0.445 Sum_probs=69.7
Q ss_pred eEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccccc
Q 006616 100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA 179 (638)
Q Consensus 100 ~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (638)
...|+|.|. -+....|+-|||+|. +|-|.||++..+...| .
T Consensus 25 e~~G~lskw-tnyi~gwqdRyv~lk-~g~Lsyykse~E~~hG-------------------------------------c 65 (611)
T KOG1739|consen 25 ERCGVLSKW-TNYIHGWQDRYVVLK-NGALSYYKSEDETEHG-------------------------------------C 65 (611)
T ss_pred hhcceeeee-ecccccccceEEEEc-ccchhhhhhhhhhhcc-------------------------------------c
Confidence 358999999 445568999999998 5666667776554333 3
Q ss_pred cceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616 180 RHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI 233 (638)
Q Consensus 180 ~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i 233 (638)
++.|.|....+.+...+ ...|.|.+....+.|.|.+.+.++.|+.+|+--.
T Consensus 66 Rgsi~l~ka~i~ahEfD---e~rfdIsvn~nv~~lra~~~~hr~~w~d~L~wmk 116 (611)
T KOG1739|consen 66 RGSICLSKAVITAHEFD---ECRFDISVNDNVWYLRAQDPDHRQQWIDALEWMK 116 (611)
T ss_pred ceeeEeccCCcccccch---hheeeeEeccceeeehhcCcHHHHHHHHHHHHHh
Confidence 45577777777765443 3459999998999999999999999999997644
No 184
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=97.31 E-value=0.00013 Score=79.72 Aligned_cols=97 Identities=22% Similarity=0.446 Sum_probs=67.0
Q ss_pred cceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616 97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 176 (638)
Q Consensus 97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 176 (638)
....|.||+.+..+ ..+.|+|||||+++ |...||+++....
T Consensus 247 e~~ekSgy~~~~~s-~~k~lkrr~~v~k~-gqi~~y~~~~~~~------------------------------------- 287 (936)
T KOG0248|consen 247 ETMEKSGYWTQLTS-RIKSLKRRYVVFKN-GQISFYRKHNNRD------------------------------------- 287 (936)
T ss_pred chhhcccchhcchH-HHHHHHhHheeecc-ceEEEEEcCCCcc-------------------------------------
Confidence 44578999998854 45789999999985 5555555543311
Q ss_pred ccccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616 177 SAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIAS 235 (638)
Q Consensus 177 ~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~ 235 (638)
..+...+++..-++.. ..+-.+.|++++...+|+|.++|+.-..+|+..|+..|.-
T Consensus 288 ~~p~s~~d~~s~~~~~---~~~~s~~fqli~~t~~~~~~~~s~~lt~dw~~iL~~~iKv 343 (936)
T KOG0248|consen 288 EEPASKIDIRSVTKLE---QQGAAYAFQLITSTDKMNFMTESERTTHDWVTILSAAIKA 343 (936)
T ss_pred ccccCcccccccceee---ccchhHHhhhhhhceeEEEeccChhhhhhhHHHHHHHHHH
Confidence 1111223443222221 1233578999999999999999999999999999999864
No 185
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=97.29 E-value=0.0037 Score=56.03 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=32.5
Q ss_pred CcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616 199 LRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA 234 (638)
Q Consensus 199 rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~ 234 (638)
-.+||.|.+++|+.-|-|++.++.+-|+.+|+..+.
T Consensus 87 ~~~si~i~t~~R~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 87 HNKSIIIVTPDRSLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred cceEEEEEcCCeEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 468999999999999999999999999999986553
No 186
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.16 E-value=0.00013 Score=83.89 Aligned_cols=98 Identities=27% Similarity=0.383 Sum_probs=69.4
Q ss_pred CCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC------Ccc
Q 006616 536 SEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPR------AVN 609 (638)
Q Consensus 536 ~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~------~~d 609 (638)
+-.....|.+|.-.+|.++..|..-.+.+.+.+|..++.+|..||||||+|+.+|+..++..|++.|++.. ..+
T Consensus 598 ~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~ 677 (975)
T KOG0520|consen 598 GSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPET 677 (975)
T ss_pred ccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCC
Confidence 44455556677777888554444333444446688889999999999999999999999998887776543 334
Q ss_pred CCCCCHHHHHHHcCCCcHHHHHHHhh
Q 006616 610 REGKTSLELAVESNFADSEVLAILSD 635 (638)
Q Consensus 610 ~~g~TpL~~A~~~g~~d~eiv~lLle 635 (638)
-.|.|+-.+|..+|+ ..+--+|-+
T Consensus 678 p~g~ta~~la~s~g~--~gia~~lse 701 (975)
T KOG0520|consen 678 PGGKTAADLARANGH--KGIAGYLSE 701 (975)
T ss_pred CCCCchhhhhhcccc--cchHHHHhh
Confidence 568889898888887 455555543
No 187
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.14 E-value=0.00027 Score=81.43 Aligned_cols=94 Identities=20% Similarity=0.198 Sum_probs=79.0
Q ss_pred CCCCCCcHHHHHHHhCCHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHhCCHHHHHHHHh-CCCCCCCccCCCCCHHHHH
Q 006616 542 DDLEGCTLLHLACDSADIGMLELLLQY-GANINATDSRGLTPLHRCILRGKAMFAKLLLT-RGADPRAVNREGKTSLELA 619 (638)
Q Consensus 542 ~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~-~gad~~~~d~~g~TpL~~A 619 (638)
....|+|.||+++..++.-+++.+++- |...+..|..|...+|+ |..++.+++-+|+. .|..++++|..|+||||+|
T Consensus 570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA 648 (975)
T KOG0520|consen 570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWA 648 (975)
T ss_pred CCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchH
Confidence 345689999999999999999999985 76677778888888888 45566777666655 5899999999999999999
Q ss_pred HHcCCCcHHHHHHHhhCCC
Q 006616 620 VESNFADSEVLAILSDSHG 638 (638)
Q Consensus 620 ~~~g~~d~eiv~lLle~ga 638 (638)
+..|+ ..++..|.+.||
T Consensus 649 a~~G~--e~l~a~l~~lga 665 (975)
T KOG0520|consen 649 AFRGR--EKLVASLIELGA 665 (975)
T ss_pred hhcCH--HHHHHHHHHhcc
Confidence 99999 789999987764
No 188
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.07 E-value=0.00042 Score=80.20 Aligned_cols=87 Identities=29% Similarity=0.229 Sum_probs=77.7
Q ss_pred CcccccccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCH
Q 006616 513 SSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKA 592 (638)
Q Consensus 513 ~~~~l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~ 592 (638)
....++.+...+......+|+..|+++|..|..|+||||.+...|+...+.+|+++||+.++.+..|.+||++|....+.
T Consensus 656 ~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~~ 735 (785)
T KOG0521|consen 656 GCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAANA 735 (785)
T ss_pred ccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhccc
Confidence 35567777788888888999999999999999999999999999999999999999999999999999999999888777
Q ss_pred HHHHHHH
Q 006616 593 MFAKLLL 599 (638)
Q Consensus 593 ~~v~lLl 599 (638)
+++-+|.
T Consensus 736 d~~~l~~ 742 (785)
T KOG0521|consen 736 DIVLLLR 742 (785)
T ss_pred cHHHHHh
Confidence 7765543
No 189
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=96.99 E-value=0.0036 Score=70.40 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=32.2
Q ss_pred ceEEEecC---CeeEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 006616 201 FCFRIISP---TKNYTLQAESALDQMDWIEKITGVIASLLSS 239 (638)
Q Consensus 201 ~cF~I~t~---~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~ 239 (638)
|.|.|... ++...|-|-+.+|...||+||+.+|...+..
T Consensus 74 yvl~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~~~~ 115 (719)
T PLN00188 74 YVLSVYNKKEKYHRITMAAFNIQEALIWKEKIESVIDQHQDS 115 (719)
T ss_pred EEEEEecCCCccccEEEecCCHHHHHHHHHHHHHHHhhhccc
Confidence 67777654 4678999999999999999999999865433
No 190
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.86 E-value=0.019 Score=50.43 Aligned_cols=35 Identities=26% Similarity=0.523 Sum_probs=28.1
Q ss_pred cceEEEec--CC---eeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616 200 RFCFRIIS--PT---KNYTLQAESALDQMDWIEKITGVIA 234 (638)
Q Consensus 200 r~cF~I~t--~~---rt~~lqA~se~e~~~Wi~ai~~~i~ 234 (638)
+++|+|.+ +. .+|+|||.|.++.++||..|+.+++
T Consensus 74 ~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 74 PCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred CceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence 45677654 43 6899999999999999999987653
No 191
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.49 E-value=0.0028 Score=67.39 Aligned_cols=62 Identities=26% Similarity=0.273 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCCCcc------cCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHH
Q 006616 559 IGMLELLLQYGANINA------TDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAV 620 (638)
Q Consensus 559 ~~~v~~Ll~~gadvn~------~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~ 620 (638)
...+++|.+++++.|. .+..--|+||+|+..|...||.+||+.|+|+.++|..|.||..++.
T Consensus 404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence 5677888888777653 3344568899999999999999999989999999999999988775
No 192
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.47 E-value=0.019 Score=50.09 Aligned_cols=37 Identities=8% Similarity=0.331 Sum_probs=31.9
Q ss_pred CcceEEEecCC--eeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616 199 LRFCFRIISPT--KNYTLQAESALDQMDWIEKITGVIAS 235 (638)
Q Consensus 199 rr~cF~I~t~~--rt~~lqA~se~e~~~Wi~ai~~~i~~ 235 (638)
-+++|.|+..+ ..|+|.|.|+++++.||.+|.-|+..
T Consensus 75 ~~~~f~L~~~~~~~~~~f~~Ktee~K~kWm~al~~a~sn 113 (116)
T cd01223 75 WKYGFYLAHKQGKTGFTFYFKTEHLRKKWLKALEMAMSN 113 (116)
T ss_pred eEEEEEEEecCCCccEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 45789999876 47999999999999999999888753
No 193
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=96.32 E-value=0.0064 Score=37.82 Aligned_cols=27 Identities=44% Similarity=0.746 Sum_probs=15.3
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCCCC
Q 006616 546 GCTLLHLACDSADIGMLELLLQYGANI 572 (638)
Q Consensus 546 G~TpLh~Aa~~g~~~~v~~Ll~~gadv 572 (638)
|.||||+|+..++.++++.|+++|.++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~ 28 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGADI 28 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 455555555555555555555555544
No 194
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.17 E-value=0.03 Score=48.19 Aligned_cols=53 Identities=17% Similarity=0.297 Sum_probs=38.9
Q ss_pred ceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHH
Q 006616 181 HTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVI 233 (638)
Q Consensus 181 ~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i 233 (638)
+.+.|..-+|....+..+.++.|+|..+- -...+-|.+.+|..+||..|+..+
T Consensus 56 GkLPL~~i~v~~lEd~e~~~~aFeI~G~li~~i~v~C~~~~e~~~Wl~hL~~~~ 109 (111)
T cd01225 56 GKLPLTGIIVTRLEDTEALKNAFEISGPLIERIVVVCNNPQDAQEWVELLNANN 109 (111)
T ss_pred eeecccccEEechHhccCccceEEEeccCcCcEEEEeCCHHHHHHHHHHHHhhc
Confidence 44566665666423333557999999886 467788899999999999998643
No 195
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=96.14 E-value=0.0093 Score=37.04 Aligned_cols=29 Identities=45% Similarity=0.609 Sum_probs=24.9
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHhCCCCCC
Q 006616 578 RGLTPLHRCILRGKAMFAKLLLTRGADPR 606 (638)
Q Consensus 578 ~G~TpLh~A~~~g~~~~v~lLl~~gad~~ 606 (638)
.|.||||+|+..++.+++++|+++|.+++
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 37899999999999999999999888764
No 196
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.00 E-value=0.04 Score=46.01 Aligned_cols=29 Identities=34% Similarity=0.582 Sum_probs=24.7
Q ss_pred EEE-ecCCeeEEEEeCCHHHHHHHHHHHHH
Q 006616 203 FRI-ISPTKNYTLQAESALDQMDWIEKITG 231 (638)
Q Consensus 203 F~I-~t~~rt~~lqA~se~e~~~Wi~ai~~ 231 (638)
|.+ .++.++|+|-|.|..|+.+||.+|+.
T Consensus 63 ~~~~~~~~KSf~~~asS~~Er~eW~~hI~~ 92 (96)
T cd01228 63 FRIHNKNGKSYTFLLSSDYERSEWRESIQK 92 (96)
T ss_pred hhccccCCceEEEEecCHHHHHHHHHHHHH
Confidence 444 45789999999999999999999875
No 197
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.93 E-value=0.015 Score=66.21 Aligned_cols=121 Identities=20% Similarity=0.092 Sum_probs=91.5
Q ss_pred cceecccccccchhhhhhhccccc---CccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccC
Q 006616 458 HQIWEGVRTNDKKAVYRHIVNFEV---DVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAG 534 (638)
Q Consensus 458 ~~L~~Av~~~d~~~v~~lLl~~ga---DvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~ 534 (638)
...+.|+..||...|.+.|..... ++|+.|.-| ...+..+..+.+.....+|+.
T Consensus 27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lG-----------------------r~al~iai~nenle~~eLLl~ 83 (822)
T KOG3609|consen 27 KGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLG-----------------------RLALHIAIDNENLELQELLLD 83 (822)
T ss_pred HHHHHHHHcCChHHHHHHHHhccccccchhccChHh-----------------------hhceecccccccHHHHHHHhc
Confidence 567789999999999998876554 777777655 233455556666667777777
Q ss_pred CCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCC---------c-ccCCCCCcHHHHHHHhCCHHHHHHHHhCCCC
Q 006616 535 TSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANI---------N-ATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 604 (638)
Q Consensus 535 ~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadv---------n-~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad 604 (638)
.+..+ .-+|.+|+..|..++|++++.+-... + ..-..+-|||.+||..++.||+++||++|+.
T Consensus 84 ~~~~~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~ 156 (822)
T KOG3609|consen 84 TSSEE-------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHC 156 (822)
T ss_pred Ccccc-------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCC
Confidence 65544 35899999999999999999873322 1 1113467999999999999999999999998
Q ss_pred CCCc
Q 006616 605 PRAV 608 (638)
Q Consensus 605 ~~~~ 608 (638)
+...
T Consensus 157 i~~P 160 (822)
T KOG3609|consen 157 IPIP 160 (822)
T ss_pred CCCC
Confidence 7654
No 198
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=95.72 E-value=0.013 Score=62.63 Aligned_cols=45 Identities=24% Similarity=0.344 Sum_probs=41.6
Q ss_pred CCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHH
Q 006616 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCI 587 (638)
Q Consensus 543 d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~ 587 (638)
+..--|+||+|+..|...+|..||..|+|+..+|..|+||..++.
T Consensus 427 ~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 427 DYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred ccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence 334679999999999999999999999999999999999999887
No 199
>PF15404 PH_4: Pleckstrin homology domain
Probab=95.63 E-value=0.078 Score=50.59 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.4
Q ss_pred CCeeEEEEeCCHHHHHHHHHHHHH
Q 006616 208 PTKNYTLQAESALDQMDWIEKITG 231 (638)
Q Consensus 208 ~~rt~~lqA~se~e~~~Wi~ai~~ 231 (638)
+.|+++|.|.|..|++.||-+|..
T Consensus 160 ~gks~VF~ARSRqERD~WV~~I~~ 183 (185)
T PF15404_consen 160 SGKSMVFMARSRQERDLWVLAINT 183 (185)
T ss_pred CCcEEEEEeccHHHHHHHHHHHHh
Confidence 457899999999999999999875
No 200
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=95.58 E-value=0.0038 Score=70.15 Aligned_cols=92 Identities=24% Similarity=0.445 Sum_probs=64.5
Q ss_pred eEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccccc
Q 006616 100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA 179 (638)
Q Consensus 100 ~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (638)
+..|||+.+=++ -..|+|-|.|..+-.+++|+..+++.+..+
T Consensus 925 qLsg~Llrkfkn-ssgwqkLwvvft~fcl~fyKS~qD~~~las------------------------------------- 966 (1036)
T KOG3531|consen 925 QLSGYLLRKFKN-SSGWQKLWVVFTNFCLFFYKSHQDSEPLAS------------------------------------- 966 (1036)
T ss_pred hhhHHHHHHhhc-cccceeeeeeecceeeEeeccccccccccc-------------------------------------
Confidence 468999866343 237999999998655555555554433221
Q ss_pred cceeecccceee--cCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006616 180 RHTVNLLTSTIK--VDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 232 (638)
Q Consensus 180 ~~~i~l~~~~v~--~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~ 232 (638)
+.|+.-++- ..++.+.+.|.|.|.-.+..|.|.|++.--...||+.|+.+
T Consensus 967 ---lPlLgysvs~P~~~d~i~K~~vfkl~fk~hvyffraes~yt~~rw~evi~~a 1018 (1036)
T KOG3531|consen 967 ---LPLLGYSVSIPAEPDPIQKDYVFKLKFKSHVYFFRAESYYTFERWMEVITDA 1018 (1036)
T ss_pred ---ccccccccCCCCCCCCcchhheeeeehhhhHHHHhhhhhhhhhhHHHHhhcC
Confidence 223322222 23455677899999999999999999999999999998754
No 201
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.44 E-value=0.26 Score=44.56 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=31.1
Q ss_pred cceEEEecCC--eeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616 200 RFCFRIISPT--KNYTLQAESALDQMDWIEKITGVIAS 235 (638)
Q Consensus 200 r~cF~I~t~~--rt~~lqA~se~e~~~Wi~ai~~~i~~ 235 (638)
..+|+|.+.. .+|+|||.|++..+.|+..|...+..
T Consensus 80 ~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL~~ 117 (133)
T cd01227 80 TKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRKVLTS 117 (133)
T ss_pred ccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 5679988765 48999999999999999999988754
No 202
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=95.34 E-value=0.014 Score=65.87 Aligned_cols=93 Identities=16% Similarity=0.362 Sum_probs=64.9
Q ss_pred ceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616 98 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS 177 (638)
Q Consensus 98 ~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 177 (638)
.+++.|||-|-+........|||.-+......||-..+...++|
T Consensus 86 p~~~~gwldk~~pqg~~~~qkr~vkf~~~s~~yf~~~k~py~k~------------------------------------ 129 (1186)
T KOG1117|consen 86 PVIKSGWLDKLSPQGEYPFQKRWVKFDGSSLEYFLSPKDPYSKG------------------------------------ 129 (1186)
T ss_pred chhhcchhhccCcCcccccCccceecCCCCccccCCCCCCCCCC------------------------------------
Confidence 36899999999776666789999999866555553333222222
Q ss_pred cccceeecccc-eeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616 178 AARHTVNLLTS-TIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIAS 235 (638)
Q Consensus 178 ~~~~~i~l~~~-~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~ 235 (638)
.|.+... .|+.. ...-|+|++.+|++.|.++++.++..|++.++++...
T Consensus 130 ----~i~va~is~v~~~-----gd~kfevitn~r~fvfr~e~~~~r~~w~s~l~s~~~~ 179 (1186)
T KOG1117|consen 130 ----PIPVAAISAVRNF-----GDNKFEVITNQRTFVFRQESEGERFIWVSPLQSALKE 179 (1186)
T ss_pred ----ceeeehhhhhhhc-----cCceEEEEecceEEEEecCCcccceeeechhhhcchh
Confidence 1222211 22211 1345999999999999999999999999999987643
No 203
>PF15406 PH_6: Pleckstrin homology domain
Probab=95.17 E-value=0.053 Score=46.36 Aligned_cols=28 Identities=21% Similarity=0.469 Sum_probs=24.0
Q ss_pred EEEecCCeeEEEEeCCHHHHHHHHHHHH
Q 006616 203 FRIISPTKNYTLQAESALDQMDWIEKIT 230 (638)
Q Consensus 203 F~I~t~~rt~~lqA~se~e~~~Wi~ai~ 230 (638)
|.+.......+|||.|..||+.||.+|.
T Consensus 83 F~f~~~G~khtF~A~s~aERD~Wv~~lk 110 (112)
T PF15406_consen 83 FHFKIKGHKHTFEAASAAERDNWVAQLK 110 (112)
T ss_pred EEEEeCCceeeeecCCHHHhccHHHHhh
Confidence 5555577889999999999999999885
No 204
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=94.94 E-value=0.0065 Score=65.96 Aligned_cols=94 Identities=20% Similarity=0.402 Sum_probs=60.4
Q ss_pred EEEEEEeecCCCCCCceeeEEEEecCce----EEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616 101 RQGYLSKRSSNLRGDWKRRFFVLDSRGM----LYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 176 (638)
Q Consensus 101 k~GyL~Kr~~~~~~~WkrRwfvL~~~~~----l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 176 (638)
..||||--+.+.-|.||||||+|-.-.. ++-|+.+ +
T Consensus 466 hsgylyaig~nvwkrwkkrffvlvqvsqytfamcsyrek----------------------------------------k 505 (1218)
T KOG3543|consen 466 HSGYLYAIGRNVWKRWKKRFFVLVQVSQYTFAMCSYREK----------------------------------------K 505 (1218)
T ss_pred cceeehhhhhHHHHHhHhhEEEEEEhhhhhhHhhhhhhc----------------------------------------c
Confidence 4899998866666789999999964211 1111211 1
Q ss_pred ccccceeecccceeecCCCCC---CCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616 177 SAARHTVNLLTSTIKVDADQS---DLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA 234 (638)
Q Consensus 177 ~~~~~~i~l~~~~v~~~~~~~---~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~ 234 (638)
.-+.+-|.|..-+|...+..+ +-++-|.-+-..-+..|..+++.|+.-|++|+-.+..
T Consensus 506 aepqel~qldgytvdytdp~pglqgg~~ffnavkegdtvifasddeqdr~lwvqamyratg 566 (1218)
T KOG3543|consen 506 AEPQELIQLDGYTVDYTDPSPGLQGGKHFFNAVKEGDTVIFASDDEQDRHLWVQAMYRATG 566 (1218)
T ss_pred cChHHHhhccCeeeccCCCCCccccchHHHHHhccCceEEeccCchhhhhHHHHHHHHhhC
Confidence 122233455555555432221 2244577776777899999999999999999987754
No 205
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=94.12 E-value=0.034 Score=63.90 Aligned_cols=95 Identities=21% Similarity=0.327 Sum_probs=60.5
Q ss_pred eEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccccc
Q 006616 100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA 179 (638)
Q Consensus 100 ~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (638)
-.+|||+|. .+..+.|.+|||+|. +|.+.||+..... ....
T Consensus 78 ~~~g~l~k~-~n~~~~~~~r~f~l~-~g~ls~~~~~~~~-------------------------------------~~~~ 118 (799)
T KOG1737|consen 78 SLEGILLKW-RNYSKGPSSRWFVLS-GGLLSYYFDNSFS-------------------------------------KTTC 118 (799)
T ss_pred cccceeecc-ccccCCcccceEEec-CcceeeeccCCcc-------------------------------------ccCC
Confidence 358999999 445778999999999 9999998765331 1122
Q ss_pred cceeecccceeecCCCCCCCcceEEEec-CCeeEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 006616 180 RHTVNLLTSTIKVDADQSDLRFCFRIIS-PTKNYTLQAESALDQMDWIEKITGVIASLLS 238 (638)
Q Consensus 180 ~~~i~l~~~~v~~~~~~~~rr~cF~I~t-~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~ 238 (638)
.+.+.+....+.. ...+. +.+.. ...+|++.+.+..++..|+.+++-+-.....
T Consensus 119 ~~~~~~~~a~i~~---~~~~~--~~~~~~~~q~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 173 (799)
T KOG1737|consen 119 GGGINLVTAWIQN---GERMD--ICSVDGSCQIYLVELSKKLQRQGWLHALELAPLIAVE 173 (799)
T ss_pred CCccccccccccc---CCCcc--cchhhcccchhhhhhhHHHhhcchhhhhhhccchhhh
Confidence 2233443333331 11112 22221 2467889999999999999999876433333
No 206
>PF15408 PH_7: Pleckstrin homology domain
Probab=94.11 E-value=0.03 Score=45.34 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=24.9
Q ss_pred ceEEEecCCe-eEEEEeCCHHHHHHHHHHHHH
Q 006616 201 FCFRIISPTK-NYTLQAESALDQMDWIEKITG 231 (638)
Q Consensus 201 ~cF~I~t~~r-t~~lqA~se~e~~~Wi~ai~~ 231 (638)
|-|-..++++ ...+-|+|.+-++.||++++.
T Consensus 64 ~G~L~~~~~~~~~~~FA~S~~~~~~Wi~~mN~ 95 (104)
T PF15408_consen 64 FGFLMYSPSRRHVQCFASSKKVCQSWIQVMNS 95 (104)
T ss_pred EEEEEecCCcchhhhhhhHHHHHHHHHHHhcC
Confidence 5677777875 455789999999999998863
No 207
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=92.61 E-value=0.47 Score=41.82 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=28.0
Q ss_pred CcceEEEecCC----eeEEEEeCCHHHHHHHHHHHHH
Q 006616 199 LRFCFRIISPT----KNYTLQAESALDQMDWIEKITG 231 (638)
Q Consensus 199 rr~cF~I~t~~----rt~~lqA~se~e~~~Wi~ai~~ 231 (638)
...||.|+... ++.+|-|+|+++++.|++.|+.
T Consensus 78 e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 78 EERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred cccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 36899998754 4799999999999999998863
No 208
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=91.18 E-value=0.33 Score=41.00 Aligned_cols=35 Identities=9% Similarity=0.247 Sum_probs=29.9
Q ss_pred CCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHH
Q 006616 197 SDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITG 231 (638)
Q Consensus 197 ~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~ 231 (638)
+|+.+.|.|...+ -.|+|.|.+++++++|+..|+.
T Consensus 71 PD~~nTFvLK~~~~~eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 71 PDNLYTFVLKVDDNTDIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred cCcccEEEEEecCCceEEEEcCCHHHHHHHHHHHhc
Confidence 3567899998765 5799999999999999999874
No 209
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=90.82 E-value=0.74 Score=44.82 Aligned_cols=90 Identities=20% Similarity=0.218 Sum_probs=59.6
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCCCCcccCC----CCCcHHHHHHH--hCCHHHHHHHHhCC-CCCCCc---cCCCCCH
Q 006616 546 GCTLLHLACDSADIGMLELLLQYGANINATDS----RGLTPLHRCIL--RGKAMFAKLLLTRG-ADPRAV---NREGKTS 615 (638)
Q Consensus 546 G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~----~G~TpLh~A~~--~g~~~~v~lLl~~g-ad~~~~---d~~g~Tp 615 (638)
-.++|-+|...+..+++-+||.+ -....+|. .+.--+-|+.. ..+..+.+.+|.+| ++||.+ -+.|.|-
T Consensus 179 A~~Am~~si~~~K~dva~~lls~-f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtM 257 (284)
T PF06128_consen 179 AHQAMWLSIGNAKEDVALYLLSK-FNFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTM 257 (284)
T ss_pred HHHHHHHHhcccHHHHHHHHHhh-cceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchH
Confidence 35778888877778888888764 22222221 12223334333 23566788888887 677653 4678899
Q ss_pred HHHHHHcCCCcHHHHHHHhhCCC
Q 006616 616 LELAVESNFADSEVLAILSDSHG 638 (638)
Q Consensus 616 L~~A~~~g~~d~eiv~lLle~ga 638 (638)
|+-|+.++. .+++.+||++||
T Consensus 258 LDNA~Ky~~--~emi~~Llk~GA 278 (284)
T PF06128_consen 258 LDNAMKYKN--SEMIAFLLKYGA 278 (284)
T ss_pred HHhHHhcCc--HHHHHHHHHcCc
Confidence 999998876 889999999886
No 210
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=89.38 E-value=4 Score=35.39 Aligned_cols=38 Identities=13% Similarity=0.329 Sum_probs=33.5
Q ss_pred CCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616 197 SDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA 234 (638)
Q Consensus 197 ~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~ 234 (638)
.+.++.|-|.|..+...|.|+|..+.+.|++.|+.-+.
T Consensus 67 ~~~~~yfgL~T~~G~vEfec~~~~~~k~W~~gI~~mL~ 104 (110)
T PF08458_consen 67 GEERRYFGLKTAQGVVEFECDSQREYKRWVQGIQHMLS 104 (110)
T ss_pred CceEEEEEEEecCcEEEEEeCChhhHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999877553
No 211
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=89.27 E-value=0.1 Score=57.85 Aligned_cols=102 Identities=14% Similarity=-0.047 Sum_probs=63.4
Q ss_pred hhcCCCcceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCC
Q 006616 91 SAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHG 170 (638)
Q Consensus 91 ~~~~~~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 170 (638)
.-+++...+.+.|||.|+.. .++.|++|||++. ++.+.||+.+.+.+.+.+....
T Consensus 251 kSgy~~~~~s~~k~lkrr~~-v~k~gqi~~y~~~-~~~~~~p~s~~d~~s~~~~~~~----------------------- 305 (936)
T KOG0248|consen 251 KSGYWTQLTSRIKSLKRRYV-VFKNGQISFYRKH-NNRDEEPASKIDIRSVTKLEQQ----------------------- 305 (936)
T ss_pred cccchhcchHHHHHHHhHhe-eeccceEEEEEcC-CCccccccCcccccccceeecc-----------------------
Confidence 34556677788999998854 5779999999998 5566666666554443211100
Q ss_pred CCCCccccccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 006616 171 GVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLL 237 (638)
Q Consensus 171 ~~~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~ 237 (638)
... -.+.+.+.++ .+.|+ ..++.+-++...-+.+||++.+..-....
T Consensus 306 ----~~s---~~fqli~~t~---------~~~~~----~~s~~lt~dw~~iL~~~iKv~~~~~~a~~ 352 (936)
T KOG0248|consen 306 ----GAA---YAFQLITSTD---------KMNFM----TESERTTHDWVTILSAAIKATTLREMASR 352 (936)
T ss_pred ----chh---HHhhhhhhce---------eEEEe----ccChhhhhhhHHHHHHHHHHHhccchhhh
Confidence 000 0122222222 23333 35678889999999999999988764433
No 212
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=88.27 E-value=0.47 Score=54.02 Aligned_cols=107 Identities=21% Similarity=0.249 Sum_probs=70.7
Q ss_pred cceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616 97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 176 (638)
Q Consensus 97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 176 (638)
...+.+|-|.|-++ +.-++|-|+|-++-+|| ..+.-. . +..
T Consensus 748 rE~ir~g~llK~sk---kgLqqrmfFLfsdilly-tsk~~~---~--------------------------------~~~ 788 (1036)
T KOG3531|consen 748 REFIRSGCLLKLSK---KGLQQRMFFLFSDILLY-TSKGPD---V--------------------------------QKC 788 (1036)
T ss_pred hhhhhcCCchhhcc---ccchhhhhhhhhhhhee-ccCCCC---h--------------------------------hhe
Confidence 34678999998854 45678888888665555 222101 0 001
Q ss_pred ccccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHHhccCCCC
Q 006616 177 SAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPE 243 (638)
Q Consensus 177 ~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~~~~~ 243 (638)
....+.+.+. -++.-..++..-++||.|.+..++.+..|.+..+.+.|+..++.+|..+.++.+++
T Consensus 789 fri~g~lP~~-l~~en~en~~s~p~~~ti~~~qk~i~vsast~~~sk~~~~~r~~~i~~~~k~~~~~ 854 (1036)
T KOG3531|consen 789 FRINGDLPLT-LTMENSENEWSVPHCFTISGAQKQIYVSASTRRESKKWEFDRRKAIDLAPKKSSPA 854 (1036)
T ss_pred eEeccCCceE-eeeecccccccCCceEEEeccceEEEEeccchhhhhhhhhccchhhhhccccCCCC
Confidence 1111223333 23332334446689999999999999999999999999999999998777765543
No 213
>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.
Probab=88.10 E-value=0.55 Score=49.46 Aligned_cols=26 Identities=42% Similarity=0.804 Sum_probs=19.8
Q ss_pred ceeEEEEEEeecCC-----CCCCceeeEEEE
Q 006616 98 QTIRQGYLSKRSSN-----LRGDWKRRFFVL 123 (638)
Q Consensus 98 ~~~k~GyL~Kr~~~-----~~~~WkrRwfvL 123 (638)
..+|+|++.||... .+..||||||.|
T Consensus 302 ~~~~eg~~~~r~~~~~~~~~~~~fkk~~f~l 332 (333)
T cd05135 302 VTVKEGYLHKRKTEGPQLLTRFAFKKRYFWL 332 (333)
T ss_pred chhhhhHhhhccccCCCCcccccccceeeec
Confidence 45799999999742 223699999987
No 214
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=86.65 E-value=0.45 Score=49.29 Aligned_cols=28 Identities=25% Similarity=0.551 Sum_probs=21.9
Q ss_pred cceeEEEEEEeecCC----CCCCceeeEEEEe
Q 006616 97 VQTIRQGYLSKRSSN----LRGDWKRRFFVLD 124 (638)
Q Consensus 97 ~~~~k~GyL~Kr~~~----~~~~WkrRwfvL~ 124 (638)
...+|+|+|.||..+ .++.||||||.|.
T Consensus 281 ~~~~~e~~~~~r~~~~~~~~~~~~kkr~~~l~ 312 (313)
T cd05394 281 PVHLKEGEMYKRAQGRTRIGKKNFKKRWFCLT 312 (313)
T ss_pred chhhHHHHHHhhccCCCccccccchhheeecC
Confidence 345799999999744 3468999999985
No 215
>cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1. The members are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin homology domain that is associated with a Bruton's tyrosine kinase motif. While this domain structure is conserved, a small change in the function of each individual domain and the interaction between domains has a marked effect on the regulation of each protein.
Probab=84.73 E-value=0.48 Score=49.54 Aligned_cols=29 Identities=28% Similarity=0.657 Sum_probs=21.9
Q ss_pred CcceeEEEEEEeecCC----CCCCceeeEEEEe
Q 006616 96 KVQTIRQGYLSKRSSN----LRGDWKRRFFVLD 124 (638)
Q Consensus 96 ~~~~~k~GyL~Kr~~~----~~~~WkrRwfvL~ 124 (638)
...++|+|++.||..+ .++.||||||.|.
T Consensus 283 ~~~~~k~g~~~~~~~~~~~~~~~~~k~r~~~lt 315 (315)
T cd05128 283 EPVVLKEGFMIKRAQGRGRLGRKNFKKRYFRLT 315 (315)
T ss_pred CchhhhhhhhHhhcccCCCccccchhheeeecC
Confidence 3456899999988643 3458999999873
No 216
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=83.90 E-value=16 Score=39.67 Aligned_cols=80 Identities=16% Similarity=0.216 Sum_probs=50.5
Q ss_pred CceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccccccceeecccceeecCC
Q 006616 115 DWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDA 194 (638)
Q Consensus 115 ~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~ 194 (638)
.-+.|||+|..+-+|++.-.+.. . ..+-.+.+.+....|....
T Consensus 324 d~~dRy~~LF~~~llflsvs~rM-------------------------------s------~fIyegKlp~tG~iV~klE 366 (661)
T KOG2070|consen 324 DEKDRYLLLFPNVLLFLSVSPRM-------------------------------S------GFIYEGKLPTTGMIVTKLE 366 (661)
T ss_pred chhhheeeeccceeeeeEecccc-------------------------------c------hhhhccccccceeEEeehh
Confidence 34689999998777776544321 0 1122233444444555422
Q ss_pred CCCCCcceEEEecCCe-eEEEEeCCHHHHHHHHHHHHH
Q 006616 195 DQSDLRFCFRIISPTK-NYTLQAESALDQMDWIEKITG 231 (638)
Q Consensus 195 ~~~~rr~cF~I~t~~r-t~~lqA~se~e~~~Wi~ai~~ 231 (638)
+....+..|+|..+.- ....-++.+.|..+|+++++.
T Consensus 367 dte~~~nafeis~~ti~rIv~~c~~~~~l~~wve~ln~ 404 (661)
T KOG2070|consen 367 DTENHRNAFEISGSTIERIVVSCNNQQDLQEWVEHLNK 404 (661)
T ss_pred hhhcccccccccccchhheeeccCChHHHHHHHHHhhh
Confidence 2223356699887763 356789999999999999985
No 217
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=83.02 E-value=0.86 Score=47.36 Aligned_cols=27 Identities=26% Similarity=0.594 Sum_probs=20.9
Q ss_pred ceeEEEEEEeecCC----CCCCceeeEEEEe
Q 006616 98 QTIRQGYLSKRSSN----LRGDWKRRFFVLD 124 (638)
Q Consensus 98 ~~~k~GyL~Kr~~~----~~~~WkrRwfvL~ 124 (638)
.++|+|+|.||..+ .++.||||||.|.
T Consensus 279 ~~~~~~~~~~r~~~~~~~~~~~~k~r~~~lt 309 (310)
T cd05134 279 ILLKEGFMIKRAQGRKRFGMKNFKKRWFRLT 309 (310)
T ss_pred chhhhhhHHHhcccCCcccccchhheeeecC
Confidence 45799999987533 3457999999986
No 218
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=82.35 E-value=2.3 Score=41.57 Aligned_cols=48 Identities=25% Similarity=0.324 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHcC-CCCcc---cCCCCCcHHHHHHHhCCHHHHHHHHhCCCC
Q 006616 557 ADIGMLELLLQYG-ANINA---TDSRGLTPLHRCILRGKAMFAKLLLTRGAD 604 (638)
Q Consensus 557 g~~~~v~~Ll~~g-advn~---~d~~G~TpLh~A~~~g~~~~v~lLl~~gad 604 (638)
.+..+++..|.+| ++||. .-+.|.|-|.-|..+++.+++.+||++||-
T Consensus 228 a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~ 279 (284)
T PF06128_consen 228 ASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI 279 (284)
T ss_pred CcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence 3578899999998 68886 346799999999999999999999999984
No 219
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=80.65 E-value=0.43 Score=48.93 Aligned_cols=41 Identities=32% Similarity=0.550 Sum_probs=36.2
Q ss_pred CcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 006616 199 LRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSS 239 (638)
Q Consensus 199 rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~ 239 (638)
-+.+..|.+..+.+.+-|.+..|+.+|+..|..+....++.
T Consensus 106 ~~~~~~~~S~~ks~~~~~as~~ek~e~~~~i~~~~~~~l~~ 146 (288)
T KOG1729|consen 106 VRNGWQILSALKSFTVLAASQTEKNEWQNHITECVEDLLSK 146 (288)
T ss_pred cccchhhhcccchhhhhcchhhhhHHHHHHHHHHHHHHHHH
Confidence 35578899999999999999999999999999998888765
No 220
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=78.63 E-value=3.1 Score=37.81 Aligned_cols=33 Identities=33% Similarity=0.452 Sum_probs=23.6
Q ss_pred cceEEEecCC---eeEEEEeCCHHHHHHHHHHHHHH
Q 006616 200 RFCFRIISPT---KNYTLQAESALDQMDWIEKITGV 232 (638)
Q Consensus 200 r~cF~I~t~~---rt~~lqA~se~e~~~Wi~ai~~~ 232 (638)
-|-|.|..-+ .+|+|.|+|+.++++|++.|.++
T Consensus 99 ~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 99 LYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp EEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred ccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 4666665544 36899999999999999999764
No 221
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=77.55 E-value=2 Score=30.21 Aligned_cols=33 Identities=15% Similarity=0.363 Sum_probs=28.5
Q ss_pred CcccccCCCCCCCceecccceeEeccchhh-hcc
Q 006616 318 NDRCADCGAPEPDWASLNLGVLVCIECSGV-HRN 350 (638)
Q Consensus 318 n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~-hr~ 350 (638)
+..|..|......+-+.+-++++|..|... |+.
T Consensus 3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~ 36 (42)
T PF00643_consen 3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG 36 (42)
T ss_dssp SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT
T ss_pred CccCccCCccceEEEecCCCCccCccCCCCCCCC
Confidence 467889998888999999999999999998 886
No 222
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=77.43 E-value=7.6 Score=40.17 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=33.3
Q ss_pred CCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616 198 DLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIAS 235 (638)
Q Consensus 198 ~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~~ 235 (638)
.|++||.|.+.. ...+|..|.+.|+..|-+++|.++-.
T Consensus 350 ~R~~CF~~qs~~ge~~yfsVEl~seLa~wE~sfq~Atf~ 388 (505)
T KOG3549|consen 350 SRQHCFLLQSSGGEPRYFSVELRSELARWENSFQAATFT 388 (505)
T ss_pred cccceEEEEcCCCCceEEEEehhhHHHHHHHHHhhHHhH
Confidence 457999999876 67899999999999999999998854
No 223
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=76.78 E-value=0.24 Score=58.68 Aligned_cols=109 Identities=14% Similarity=0.177 Sum_probs=65.2
Q ss_pred eeEEEEEEee---------cCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccC
Q 006616 99 TIRQGYLSKR---------SSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYH 169 (638)
Q Consensus 99 ~~k~GyL~Kr---------~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 169 (638)
..|+||||-+ .+.....|++-|-+|..+.++.|.......+.... ..+.+.
T Consensus 923 ~~megWly~~q~~SkkGk~tGssLr~wk~~y~~l~ghsl~L~ss~re~~~~~aa----------s~as~~---------- 982 (1973)
T KOG4407|consen 923 SEMEGWLYVLQSSSKKGKATGSSLREWKLSYTGLHGHSLVLNSSAREHNSQSAA----------SLASSS---------- 982 (1973)
T ss_pred hhhhcceeeeeecccCCcccCcchhhhhhHHHHhccccceecccccccCcchhh----------hhcccc----------
Confidence 4589999822 22234579999999987666666544432111100 000000
Q ss_pred CCCCCccccccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHH
Q 006616 170 GGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVI 233 (638)
Q Consensus 170 ~~~~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i 233 (638)
. .... ..+-+..|-+.+.-.+..++..|++.+.+ -.+.|||++.++|-.|++.++...
T Consensus 983 --~-st~t---ts~c~nscltdI~ysetkrn~vfRLTt~d~ce~lfqaeDrddmlgG~~ttq~St 1041 (1973)
T KOG4407|consen 983 --C-STAT---TSECLNSCLTDIQYSETKRNQVFRLTTNDLCEGLFQAEDRDDMLGGLSTTQSST 1041 (1973)
T ss_pred --c-cccc---CccccccchhhhhhhhhhhhhHHHhHHHHHHhHhhccCccccccchhhhhhhcc
Confidence 0 0111 11233444444433445678899999987 689999999999999999886543
No 224
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=76.67 E-value=0.18 Score=61.72 Aligned_cols=108 Identities=16% Similarity=0.264 Sum_probs=69.3
Q ss_pred eEEEEEEeecC-------CCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCC
Q 006616 100 IRQGYLSKRSS-------NLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGV 172 (638)
Q Consensus 100 ~k~GyL~Kr~~-------~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 172 (638)
..+|+||.+-- ...+.|..-||+|. .+.+.+|+.......|.
T Consensus 2300 ~~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~-e~el~fykD~k~~~a~v------------------------------ 2348 (2473)
T KOG0517|consen 2300 QLEGFLYRKHLLGALEIKASNRSWDNVYCRIR-EKELGFYKDAKKDLASV------------------------------ 2348 (2473)
T ss_pred HHHhHHHHHHHHhhhhhhhhcccHHHHHHHHH-hccchhhcccCcccccc------------------------------
Confidence 46899974321 13468999999998 45555555543311110
Q ss_pred CCccccccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 006616 173 HDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASLLSS 239 (638)
Q Consensus 173 ~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~ 239 (638)
+........+.+..+.|.+..+..++.+.|.+..+. ..|.|||.++++|..|++++...+.+++.-
T Consensus 2349 -e~~~r~e~~lel~~a~i~~a~dy~kkk~v~~l~~~~gae~llq~k~ee~m~sWL~~~a~~~~~~lk~ 2415 (2473)
T KOG0517|consen 2349 -ELLVRGEPPLELDMAAIEVASDYHKKKHVFLLQLPPGAEHLLQAKDEEEMESWLRALAVKRAEALKL 2415 (2473)
T ss_pred -hhhccCCcchhcchhHHHHHHHHHHHhHhhhhcCCchHHHHHhhccHHHHHHHHHHHHHHHHHHhhh
Confidence 000011112445555555545555778889888654 789999999999999999999998876643
No 225
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=75.62 E-value=0.038 Score=57.05 Aligned_cols=50 Identities=22% Similarity=0.312 Sum_probs=39.4
Q ss_pred eeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006616 182 TVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 232 (638)
Q Consensus 182 ~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~ 232 (638)
.|+|..|+-.. .-...+.|-|.|-+.+-.|+|.|-+.--+..||.|+...
T Consensus 64 ~~~LR~C~~v~-e~a~q~nY~~~i~~~~~~~tL~~~~s~Ir~~~~~A~~kT 113 (593)
T KOG4807|consen 64 EIDLRSCTDVT-EYAVQRNYGFQIHTKDAVYTLSAMTSGIRRNWIEALRKT 113 (593)
T ss_pred cccHHHHHHHH-HHHHHhccceeecccchhhhhHHHHHHHHHHHHHHHHhc
Confidence 47788776442 122356899999999999999999999999999998743
No 226
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=70.55 E-value=7.8 Score=31.27 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=40.1
Q ss_pred CcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhC
Q 006616 547 CTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601 (638)
Q Consensus 547 ~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~ 601 (638)
..-|..|+..|+.++++.+++.+ .++ ...|..|+..-+.++++.|++.
T Consensus 7 ~~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 7 KKTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence 34689999999999999999765 332 3579999999999999999886
No 227
>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]
Probab=69.09 E-value=33 Score=38.45 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=25.8
Q ss_pred CCcceEEEecC----C--eeEEEEeCCHHHHHHHHHHHH
Q 006616 198 DLRFCFRIISP----T--KNYTLQAESALDQMDWIEKIT 230 (638)
Q Consensus 198 ~rr~cF~I~t~----~--rt~~lqA~se~e~~~Wi~ai~ 230 (638)
.+++.|.+.-- + ..+.|+|+|+.|+..||.|+.
T Consensus 553 ~~~hlF~ltLl~N~~~~~~e~lL~a~s~Sd~~RWi~Al~ 591 (695)
T KOG3523|consen 553 SRPHLFLLTLLSNHQGRQTELLLSAESQSDRQRWISALR 591 (695)
T ss_pred cccceEEEehhhccCCCceeeeecCCchHHHHHHHHhcC
Confidence 45677877642 2 369999999999999999873
No 228
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=68.79 E-value=7.7 Score=42.94 Aligned_cols=88 Identities=24% Similarity=0.331 Sum_probs=57.1
Q ss_pred cceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616 97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 176 (638)
Q Consensus 97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 176 (638)
+.+.|+|+|.|+.+ ++ =+||.|.|.+.+.+.|+........|.
T Consensus 449 ~~i~k~~~l~k~~~-lf--~rkr~lllTn~~rll~~~~~~~~lk~e---------------------------------- 491 (604)
T KOG0592|consen 449 SLILKEGALEKRQG-LF--ARKRMLLLTNGPRLLYVDPQNLVLKGE---------------------------------- 491 (604)
T ss_pred hhHHhHHHHHhhhh-hh--hceeEEEecCCCeEEEEecccceeccc----------------------------------
Confidence 34678889888844 33 367999999999998887554433332
Q ss_pred ccccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006616 177 SAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV 232 (638)
Q Consensus 177 ~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~ 232 (638)
|.+..+. ++. ......|-|.||+++|+|-- =+.....|-.+|..+
T Consensus 492 ------ip~~~~~-~~e---~~n~~~~~i~TP~k~~~l~d-~~~~as~w~~ai~~~ 536 (604)
T KOG0592|consen 492 ------IPWSPDL-RVE---LKNSSTFFIHTPNKVYYLED-PEQRASVWCKAIETV 536 (604)
T ss_pred ------cccCccc-cee---eccCcceEEECCccceeccC-cccchhHHHHhhhhh
Confidence 1111111 111 11235699999999999865 345677899999877
No 229
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=67.51 E-value=18 Score=32.79 Aligned_cols=41 Identities=17% Similarity=0.401 Sum_probs=34.6
Q ss_pred CCCcceEEEec--------CCeeEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 006616 197 SDLRFCFRIIS--------PTKNYTLQAESALDQMDWIEKITGVIASLL 237 (638)
Q Consensus 197 ~~rr~cF~I~t--------~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~ 237 (638)
.+-++.++|+. |+++|.|++.+.+-+...|+.|++.|....
T Consensus 110 ~e~~~vwEliH~kSe~egRpE~vfqLCcS~~E~k~~flK~Irsilre~~ 158 (160)
T cd01255 110 MESNFLWELIHLKSELEGRPEKVFVLCCSTAESRNAFLKTIRSILRESV 158 (160)
T ss_pred cccceEEEEEeecccccCCCcceEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 45578899986 668999999999999999999998886543
No 230
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=65.18 E-value=10 Score=39.97 Aligned_cols=39 Identities=26% Similarity=0.453 Sum_probs=33.4
Q ss_pred cceEEEecCC--eeEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 006616 200 RFCFRIISPT--KNYTLQAESALDQMDWIEKITGVIASLLS 238 (638)
Q Consensus 200 r~cF~I~t~~--rt~~lqA~se~e~~~Wi~ai~~~i~~~~~ 238 (638)
+-||+|.+|+ .+..|.|.+..+.+.|..||...+..++.
T Consensus 236 nR~lEihSpdg~~tliLR~kdsa~A~~Wf~AiHa~v~~ll~ 276 (506)
T KOG3551|consen 236 NRQLEIHSPDGRHTLILRAKDSAEADSWFEAIHANVNTLLT 276 (506)
T ss_pred cceeeeeCCCCcceEEEEccCcHHHHHHHHHHHHHHhhHHH
Confidence 4689999998 48889999999999999999988765553
No 231
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=64.99 E-value=12 Score=35.63 Aligned_cols=45 Identities=16% Similarity=0.256 Sum_probs=33.0
Q ss_pred HHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHh
Q 006616 550 LHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 600 (638)
Q Consensus 550 Lh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~ 600 (638)
|..|+..|-+..+--.|++|.+++. ++|..|+.++|..++.+++.
T Consensus 147 l~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~ 191 (192)
T PF03158_consen 147 LEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR 191 (192)
T ss_pred HHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence 5667777777777777777777764 67777777777777777653
No 232
>PRK12495 hypothetical protein; Provisional
Probab=61.75 E-value=4.2 Score=39.53 Aligned_cols=29 Identities=28% Similarity=0.562 Sum_probs=24.3
Q ss_pred ccCCcccccCCCCCCCceecccceeEeccchhh
Q 006616 315 VCGNDRCADCGAPEPDWASLNLGVLVCIECSGV 347 (638)
Q Consensus 315 ~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~ 347 (638)
.+.+..|.+||.|-|. + -|+..|..|-.+
T Consensus 39 tmsa~hC~~CG~PIpa---~-pG~~~Cp~CQ~~ 67 (226)
T PRK12495 39 TMTNAHCDECGDPIFR---H-DGQEFCPTCQQP 67 (226)
T ss_pred ccchhhcccccCcccC---C-CCeeECCCCCCc
Confidence 4579999999999993 2 699999999754
No 233
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=61.69 E-value=10 Score=39.96 Aligned_cols=39 Identities=10% Similarity=0.160 Sum_probs=29.7
Q ss_pred ceEEEecCC----eeEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 006616 201 FCFRIISPT----KNYTLQAESALDQMDWIEKITGVIASLLSS 239 (638)
Q Consensus 201 ~cF~I~t~~----rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~ 239 (638)
..|.+.|.. .++.|.+|+..|+..|...|-+....+.+.
T Consensus 365 lsFa~RtGTrqGV~thlfrvEThrdLa~WtRslVqGch~Aae~ 407 (506)
T KOG3551|consen 365 LSFATRTGTRQGVETHLFRVETHRELAAWTRSLVQGCHEAAEL 407 (506)
T ss_pred EEEEEecccccceEEEEEEeccHHHHHHHHHHHHHHHHHHHHH
Confidence 456666655 489999999999999999887766554433
No 234
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=61.53 E-value=7.2 Score=42.97 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=25.3
Q ss_pred CcceEEEecCCeeEEEEeCC------------HHHHHHHHHHHHHHH
Q 006616 199 LRFCFRIISPTKNYTLQAES------------ALDQMDWIEKITGVI 233 (638)
Q Consensus 199 rr~cF~I~t~~rt~~lqA~s------------e~e~~~Wi~ai~~~i 233 (638)
.++||+|.|..-+| |-.++ .+-.+.|-.||+.+.
T Consensus 478 ~phcFEI~T~~~vy-fVge~p~~~~~~~~g~g~d~a~~w~~ai~~al 523 (888)
T KOG4236|consen 478 NPHCFEIRTATTVY-FVGENPSSTPGGESGVGLDAAQGWETAIQQAL 523 (888)
T ss_pred CCceEEEEeeeEEE-EecCCCCCCccccccccchhhccCchhhhhcc
Confidence 47999999988544 55666 344788999988764
No 235
>PRK11019 hypothetical protein; Provisional
Probab=60.03 E-value=2.2 Score=35.52 Aligned_cols=39 Identities=26% Similarity=0.595 Sum_probs=28.5
Q ss_pred CCcccccCCCCCCC--ceecccceeEeccchhhhccCCCccc
Q 006616 317 GNDRCADCGAPEPD--WASLNLGVLVCIECSGVHRNLGVHIS 356 (638)
Q Consensus 317 ~n~~c~dC~~~~p~--w~~~~~g~~~C~~Csg~hr~lg~~~s 356 (638)
+-..|.+||.+-|. |.- --|+..|++|...+-..+.|..
T Consensus 35 syg~C~~CG~~Ip~~Rl~A-~P~a~~Cv~Cq~~~E~~~k~~~ 75 (88)
T PRK11019 35 SLTECEECGEPIPEARRKA-IPGVRLCVACQQEKDLQQAAFS 75 (88)
T ss_pred cCCeeCcCCCcCcHHHHhh-cCCccccHHHHHHHHHHHhHhc
Confidence 46799999998663 333 2388999999998766655544
No 236
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=59.65 E-value=13 Score=29.91 Aligned_cols=47 Identities=23% Similarity=0.392 Sum_probs=37.4
Q ss_pred cHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhC
Q 006616 581 TPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDS 636 (638)
Q Consensus 581 TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ 636 (638)
.-|..|+..|+.++++.+++.+ .++ ...+..|+...+ -++++.|++.
T Consensus 8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~--n~i~~~l~~~ 54 (76)
T PF11929_consen 8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHN--NEIADWLIEN 54 (76)
T ss_pred HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhh--HHHHHHHHHh
Confidence 4678999999999999998765 222 347899998876 7899998874
No 237
>cd05395 RasGAP_RASA4 Ras GTPase activating-like 4 protein (RASAL4), also known as Ca2+ -promoted Ras inactivator (CAPRI), is a member of the GAP1 family. Members of the GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL4, like RASAL, is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to a receptor-mediated elevation in the concentration of intracellular free Ca2+ ([Ca2+]i). However, unlike RASAL, RASAL4 does not sense oscillations in [Ca2+]i.
Probab=57.85 E-value=5.5 Score=42.07 Aligned_cols=25 Identities=24% Similarity=0.712 Sum_probs=17.9
Q ss_pred eEEEEEE-eecCC----CCCCceeeEEEEe
Q 006616 100 IRQGYLS-KRSSN----LRGDWKRRFFVLD 124 (638)
Q Consensus 100 ~k~GyL~-Kr~~~----~~~~WkrRwfvL~ 124 (638)
+|+|.++ ||..+ ..+.||||||.|.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 331 (337)
T cd05395 302 VKEGFLFLHRTKGKGPLMTSPFKKLYFTLT 331 (337)
T ss_pred HHHHHHHHHhccCCCCccccchhhheeeee
Confidence 3677666 66533 3368999999996
No 238
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=56.94 E-value=0.58 Score=53.08 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=29.3
Q ss_pred cceEEEecCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006616 200 RFCFRIISPTKNYTLQAESALDQMDWIEKITGV 232 (638)
Q Consensus 200 r~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~ 232 (638)
+..|-|++|-++..++|++..||..||.+++..
T Consensus 61 ~~sf~vi~~~rk~r~~adn~ke~e~wi~~~kt~ 93 (1099)
T KOG1170|consen 61 RPSFCVITPVRKHRLCADNRKEMEKWINQSKTP 93 (1099)
T ss_pred CCCeeEecccHHhhhhccchhHHHHhhccccch
Confidence 556779999999999999999999999988654
No 239
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=54.86 E-value=5 Score=27.05 Aligned_cols=27 Identities=30% Similarity=0.812 Sum_probs=16.8
Q ss_pred cccccCCCC-CCCceecccceeEeccch
Q 006616 319 DRCADCGAP-EPDWASLNLGVLVCIECS 345 (638)
Q Consensus 319 ~~c~dC~~~-~p~w~~~~~g~~~C~~Cs 345 (638)
..|-+|+.+ .-+|..-+|+..+|-.|.
T Consensus 4 ~~C~eC~~~f~dSyL~~~F~~~VCD~CR 31 (34)
T PF01286_consen 4 PKCDECGKPFMDSYLLNNFDLPVCDKCR 31 (34)
T ss_dssp EE-TTT--EES-SSCCCCTS-S--TTT-
T ss_pred chHhHhCCHHHHHHHHHhCCcccccccc
Confidence 479999997 458999999999999995
No 240
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=53.97 E-value=8.9 Score=26.24 Aligned_cols=25 Identities=32% Similarity=0.860 Sum_probs=21.4
Q ss_pred CcccccCCCCCCCceecccceeEeccch
Q 006616 318 NDRCADCGAPEPDWASLNLGVLVCIECS 345 (638)
Q Consensus 318 n~~c~dC~~~~p~w~~~~~g~~~C~~Cs 345 (638)
|..|..|++. |...+=|-+.|.+|-
T Consensus 8 ~~~C~~C~~~---~~~~~dG~~yC~~cG 32 (36)
T PF11781_consen 8 NEPCPVCGSR---WFYSDDGFYYCDRCG 32 (36)
T ss_pred CCcCCCCCCe---EeEccCCEEEhhhCc
Confidence 5679999988 778888999999984
No 241
>TIGR02419 C4_traR_proteo phage/conjugal plasmid C-4 type zinc finger protein, TraR family. Members of this family are putative C4-type zinc finger proteins found almost exclusively in prophage regions, actual phage, or conjugal transfer regions of the Proteobactia. This small protein (about 70 amino acids) appears homologous to but is smaller than DksA (DnaK suppressor protein), found to be critical for regulating transcription of ribosomal RNA.
Probab=51.77 E-value=4.7 Score=31.42 Aligned_cols=35 Identities=29% Similarity=0.584 Sum_probs=24.7
Q ss_pred cccCCcccccCCCCCCCce-ecccceeEeccchhhh
Q 006616 314 RVCGNDRCADCGAPEPDWA-SLNLGVLVCIECSGVH 348 (638)
Q Consensus 314 ~~~~n~~c~dC~~~~p~w~-~~~~g~~~C~~Csg~h 348 (638)
..++...|.|||.+-|.-- -..-|+..|++|...+
T Consensus 27 ~~~s~g~C~~Cg~~Ip~~Rl~a~p~~~~Cv~Cq~~~ 62 (63)
T TIGR02419 27 IGPSLRECEDCGEPIPEARREALPGVTRCVSCQEIL 62 (63)
T ss_pred cCCCCCeeccCCCcChHHHHhhcCCcCCcHHHHhhc
Confidence 3467789999999866322 2334889999997654
No 242
>PRK13715 conjugal transfer protein TraR; Provisional
Probab=50.55 E-value=4.1 Score=32.75 Aligned_cols=36 Identities=28% Similarity=0.625 Sum_probs=24.7
Q ss_pred CCcccccCCCCCCCcee-cccceeEeccchhhhccCC
Q 006616 317 GNDRCADCGAPEPDWAS-LNLGVLVCIECSGVHRNLG 352 (638)
Q Consensus 317 ~n~~c~dC~~~~p~w~~-~~~g~~~C~~Csg~hr~lg 352 (638)
+...|.|||.+-|.=-- .--|+..|++|...+-.-+
T Consensus 33 ~~~~C~~Cg~~Ip~~Rl~a~p~~~~Cv~Cq~~~E~~~ 69 (73)
T PRK13715 33 PVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69 (73)
T ss_pred CcccHhhcCCcCCHHHHhcCCCcCCCHHHHHHHHHHh
Confidence 34689999998663221 2248999999988664433
No 243
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=49.37 E-value=1.3e+02 Score=33.71 Aligned_cols=36 Identities=11% Similarity=0.293 Sum_probs=29.1
Q ss_pred CcceEEEecCC-e-eEEEEeCCHHHHHHHHHHHHHHHH
Q 006616 199 LRFCFRIISPT-K-NYTLQAESALDQMDWIEKITGVIA 234 (638)
Q Consensus 199 rr~cF~I~t~~-r-t~~lqA~se~e~~~Wi~ai~~~i~ 234 (638)
.++-|-|+... + -+.|-+.+++-++.||+++.-++.
T Consensus 475 ws~~f~lI~tqg~ngl~fy~Kte~~kkkWmeqfema~S 512 (865)
T KOG2996|consen 475 WSYGFYLIHTQGRNGLEFYCKTEDLKKKWMEQFEMAKS 512 (865)
T ss_pred eeeeEEEEEEcCCcceEEEEecHHHHHHHHHHHHHHHh
Confidence 56888888654 3 588889999999999999987664
No 244
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=47.64 E-value=23 Score=39.42 Aligned_cols=52 Identities=19% Similarity=0.377 Sum_probs=37.0
Q ss_pred ceeecccceeecCCCC---CCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616 181 HTVNLLTSTIKVDADQ---SDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI 233 (638)
Q Consensus 181 ~~i~l~~~~v~~~~~~---~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i 233 (638)
.+|.|..|.+.+ ++. .|..+.|.++-....|+|.|+|++-.+.|+..+.-|.
T Consensus 541 ~~iPl~~~~v~~-pe~~~~~D~~~~~k~~~s~~~~~~~a~~~q~qq~wl~~l~~A~ 595 (623)
T KOG4424|consen 541 ATIPLPGVEVTI-PEFVRREDLFHVFKLVQSHLSWHLAADDEQLQQRWLEVLLLAV 595 (623)
T ss_pred cccccCccccCC-CcccccchhcchhhhhhhcceeeeccCCHHHHHHHHHHHHhhh
Confidence 346677777764 222 2344556666566799999999999999999887665
No 245
>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG].
Probab=46.66 E-value=16 Score=27.26 Aligned_cols=36 Identities=25% Similarity=0.609 Sum_probs=28.8
Q ss_pred CcccccCCCC-CCCceecccce-eEeccchhhhccCCC
Q 006616 318 NDRCADCGAP-EPDWASLNLGV-LVCIECSGVHRNLGV 353 (638)
Q Consensus 318 n~~c~dC~~~-~p~w~~~~~g~-~~C~~Csg~hr~lg~ 353 (638)
...|..|+.. .|.|-.-..|. ++|-.|.--.+.-|.
T Consensus 3 ~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~~ 40 (52)
T smart00401 3 GRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGG 40 (52)
T ss_pred CCCcCCCCCCCCCccccCCCCCCcEeecccHHHHHcCC
Confidence 5689999987 48998888886 999999776665443
No 246
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=45.18 E-value=3.5 Score=46.02 Aligned_cols=36 Identities=28% Similarity=0.615 Sum_probs=24.7
Q ss_pred eEEEEEEeecCC--CCCCceeeEEEEecCceEEEEecC
Q 006616 100 IRQGYLSKRSSN--LRGDWKRRFFVLDSRGMLYYYRKQ 135 (638)
Q Consensus 100 ~k~GyL~Kr~~~--~~~~WkrRwfvL~~~~~l~y~~~~ 135 (638)
..+|||+++..+ ...-|+|-||||.++-++.|...+
T Consensus 563 ~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~ 600 (638)
T KOG1738|consen 563 DRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHR 600 (638)
T ss_pred hhhccchhhccchHHHHHhhhheeeecCchhhhhhhhh
Confidence 468999977554 223699999999865555554443
No 247
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=44.82 E-value=15 Score=26.04 Aligned_cols=24 Identities=38% Similarity=0.840 Sum_probs=17.9
Q ss_pred ccccCCCCCCCceecccceeEeccc
Q 006616 320 RCADCGAPEPDWASLNLGVLVCIEC 344 (638)
Q Consensus 320 ~c~dC~~~~p~w~~~~~g~~~C~~C 344 (638)
.|..||+.. .-..-.-|-++|..|
T Consensus 2 ~Cp~Cg~~~-~~~D~~~g~~vC~~C 25 (43)
T PF08271_consen 2 KCPNCGSKE-IVFDPERGELVCPNC 25 (43)
T ss_dssp SBTTTSSSE-EEEETTTTEEEETTT
T ss_pred CCcCCcCCc-eEEcCCCCeEECCCC
Confidence 588999876 333445788999999
No 248
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=44.52 E-value=24 Score=40.80 Aligned_cols=37 Identities=27% Similarity=0.614 Sum_probs=28.6
Q ss_pred CcceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEec
Q 006616 96 KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRK 134 (638)
Q Consensus 96 ~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~ 134 (638)
....+|+|.||.+ ....+.|.+.||||. +..|+|...
T Consensus 472 ~~nsvk~GiLy~k-d~vdheWt~h~fvlt-~~kl~ys~e 508 (1267)
T KOG1264|consen 472 HKNSVKQGILYMK-DPVDHEWTRHYFVLT-DAKLSYSDE 508 (1267)
T ss_pred chhhhhcceEEEe-cCCCCceeeeEEEEe-cceeEeehh
Confidence 3345799999999 445678999999998 567777643
No 249
>PF01258 zf-dskA_traR: Prokaryotic dksA/traR C4-type zinc finger; InterPro: IPR000962 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents domains identified in zinc finger-containing members of the DksA/TraR family. DksA is a critical component of the rRNA transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP. In delta-dksA mutants, rRNA promoters are unresponsive to changes in amino acid availability, growth rate, or growth phase. In vitro, DksA binds to RNAP, reduces open complex lifetime, inhibits rRNA promoter activity, and amplifies effects of ppGpp and the initiating NTP on rRNA transcription [, ]. The dksA gene product suppresses the temperature-sensitive growth and filamentation of a dnaK deletion mutant of Escherichia coli. Gene knockout [] and deletion [] experiments have shown the gene to be non-essential, mutations causing a mild sensitivity to UV light, but not affecting DNA recombination []. In Pseudomonas aeruginosa, dksA is a novel regulator involved in the post-transcriptional control of extracellular virulence factor production []. The proteins contain a C-terminal region thought to fold into a 4-cysteine zinc finger. Other proteins found to contain a similar zinc finger domain include: the traR gene products encoded on the E. coli F and R100 plasmids [, ] the traR gene products encoded on Salmonella spp. plasmids pED208 and pSLT the dnaK suppressor hypothetical proteins from bacteria and bacteriophage FHL4, LIM proteins from Homo sapiens (Human) and Mus musculus (Mouse) [] More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2GVI_A 2KQ9_A 2KGO_A 1TJL_I.
Probab=41.46 E-value=4.3 Score=27.63 Aligned_cols=30 Identities=33% Similarity=0.777 Sum_probs=17.1
Q ss_pred cccccCCCCCCCc-eecccceeEeccchhhh
Q 006616 319 DRCADCGAPEPDW-ASLNLGVLVCIECSGVH 348 (638)
Q Consensus 319 ~~c~dC~~~~p~w-~~~~~g~~~C~~Csg~h 348 (638)
..|.+||.+-|.= .-+.-|..+|+.|...|
T Consensus 4 g~C~~CGe~I~~~Rl~~~p~~~~C~~C~~~~ 34 (36)
T PF01258_consen 4 GICEDCGEPIPEERLVAVPGATLCVECQERR 34 (36)
T ss_dssp SB-TTTSSBEEHHHHHHCTTECS-HHHHHHH
T ss_pred CCccccCChHHHHHHHhCCCcEECHHHhCcc
Confidence 3499999864321 12223788999998754
No 250
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=40.74 E-value=11 Score=25.51 Aligned_cols=30 Identities=30% Similarity=0.622 Sum_probs=15.0
Q ss_pred cccccCCCCCCCcee--cccceeEeccchhhh
Q 006616 319 DRCADCGAPEPDWAS--LNLGVLVCIECSGVH 348 (638)
Q Consensus 319 ~~c~dC~~~~p~w~~--~~~g~~~C~~Csg~h 348 (638)
++|..||.+--.=+. -+.--.+|..|.-||
T Consensus 1 kfC~~CG~~l~~~ip~gd~r~R~vC~~Cg~Ih 32 (34)
T PF14803_consen 1 KFCPQCGGPLERRIPEGDDRERLVCPACGFIH 32 (34)
T ss_dssp -B-TTT--B-EEE--TT-SS-EEEETTTTEEE
T ss_pred CccccccChhhhhcCCCCCccceECCCCCCEE
Confidence 478899987311111 245567899998888
No 251
>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....
Probab=40.60 E-value=18 Score=24.69 Aligned_cols=30 Identities=27% Similarity=0.750 Sum_probs=21.6
Q ss_pred cccCCCC-CCCceeccccee-Eeccchhhhcc
Q 006616 321 CADCGAP-EPDWASLNLGVL-VCIECSGVHRN 350 (638)
Q Consensus 321 c~dC~~~-~p~w~~~~~g~~-~C~~Csg~hr~ 350 (638)
|..|+.. -|.|-....|-. ||-.|---+|.
T Consensus 1 C~~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk 32 (36)
T PF00320_consen 1 CSNCGTTETPQWRRGPNGNRTLCNACGLYYKK 32 (36)
T ss_dssp -TTT--ST-SSEEEETTSEE-EEHHHHHHHHH
T ss_pred CcCCcCCCCchhhcCCCCCCHHHHHHHHHHHH
Confidence 7889987 599998888888 99999765554
No 252
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=38.68 E-value=51 Score=38.31 Aligned_cols=56 Identities=14% Similarity=0.255 Sum_probs=39.2
Q ss_pred ceeecccceeecCC-CCCCCcceEEEecC---CeeEEEEeCCHHHHHHHHHHHHHHHHHH
Q 006616 181 HTVNLLTSTIKVDA-DQSDLRFCFRIISP---TKNYTLQAESALDQMDWIEKITGVIASL 236 (638)
Q Consensus 181 ~~i~l~~~~v~~~~-~~~~rr~cF~I~t~---~rt~~lqA~se~e~~~Wi~ai~~~i~~~ 236 (638)
+..++..+.|...+ ...++-|.|.|... ...|.|.|++.+|..+|+++|+.+...+
T Consensus 854 gi~d~~~~nvv~~~q~~n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~a 913 (1267)
T KOG1264|consen 854 GILDLNTYNVVKAPQGKNQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWKA 913 (1267)
T ss_pred ccccccccceeecccccCCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHHh
Confidence 34455555554333 33466788887653 2468899999999999999999876543
No 253
>COG1381 RecO Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=37.31 E-value=15 Score=37.23 Aligned_cols=30 Identities=33% Similarity=0.753 Sum_probs=26.5
Q ss_pred cCCcccccCCCCC-CCceecccceeEeccch
Q 006616 316 CGNDRCADCGAPE-PDWASLNLGVLVCIECS 345 (638)
Q Consensus 316 ~~n~~c~dC~~~~-p~w~~~~~g~~~C~~Cs 345 (638)
|.=..|+.||.+. |...|.-.|-++|.+|+
T Consensus 152 ~~l~~Ca~cg~~~~~~~~s~~~~~~~C~~~~ 182 (251)
T COG1381 152 PNLTSCARCGTPVDPVYFSPKSGGFLCSKCA 182 (251)
T ss_pred cchHHHhCcCCcCCCcceeeccCcccchhcc
Confidence 4567899999996 47899999999999998
No 254
>PHA00080 DksA-like zinc finger domain containing protein
Probab=36.98 E-value=12 Score=30.02 Aligned_cols=33 Identities=24% Similarity=0.692 Sum_probs=23.9
Q ss_pred cCCcccccCCCCCC--CceecccceeEeccchhhhc
Q 006616 316 CGNDRCADCGAPEP--DWASLNLGVLVCIECSGVHR 349 (638)
Q Consensus 316 ~~n~~c~dC~~~~p--~w~~~~~g~~~C~~Csg~hr 349 (638)
++...|-+||.+-| .|.- .-|+..|++|...+-
T Consensus 29 ~~~~~C~~Cg~~Ip~~Rl~a-~P~~~~Cv~Cq~~~E 63 (72)
T PHA00080 29 PSATHCEECGDPIPEARREA-VPGCRTCVSCQEILE 63 (72)
T ss_pred CCCCEecCCCCcCcHHHHHh-CCCccCcHHHHHHHH
Confidence 45678999999865 3322 347889999988654
No 255
>PF03586 Herpes_UL36: Herpesvirus UL36 tegument protein; InterPro: IPR005210 The UL36 open reading frame (ORF) encodes the largest Human herpesvirus 1 (HHV-1) protein, a 270 kDa polypeptide designated VP1/2, which is also a component of the virion tegument. A null mutation in the UL36 gene of herpes simplex virus type 1 results in accumulation of unenveloped DNA-filled capsids in the cytoplasm of infected cells []. The region which defines these sequences only covers a small central part of this large protein.; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity
Probab=36.60 E-value=74 Score=31.85 Aligned_cols=47 Identities=13% Similarity=0.237 Sum_probs=35.6
Q ss_pred hhhHHHhHHHHHhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 006616 4 HLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEY 50 (638)
Q Consensus 4 ~~~ff~~G~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 50 (638)
...||.+||+.|.++.+-++.+...+-++.-..-.|.....+.....
T Consensus 159 YVdFYrrgy~~F~~~~~~L~~lRadv~~A~G~~~~El~~AlE~~t~v 205 (253)
T PF03586_consen 159 YVDFYRRGYEEFEEERARLSALRADVLQASGSVPLELSRALEEVTRV 205 (253)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH
Confidence 35799999999999999999999888777666655555444544443
No 256
>TIGR00613 reco DNA repair protein RecO. All proteins in this family for which functions are known are DNA binding proteins that are involved in the initiation of recombination or recombinational repair.
Probab=36.30 E-value=21 Score=35.59 Aligned_cols=33 Identities=30% Similarity=0.639 Sum_probs=27.0
Q ss_pred ccCCcccccCCCCCC-CceecccceeEeccchhh
Q 006616 315 VCGNDRCADCGAPEP-DWASLNLGVLVCIECSGV 347 (638)
Q Consensus 315 ~~~n~~c~dC~~~~p-~w~~~~~g~~~C~~Csg~ 347 (638)
.|.-..|+.||..++ .+.+..-|-++|.+|.+.
T Consensus 144 ~p~l~~C~~cg~~~~~~~fs~~~gg~~C~~c~~~ 177 (241)
T TIGR00613 144 ALDLDKCAVCGSKEDLIYFSMTYGGALCRQCGEK 177 (241)
T ss_pred CcccCccCCCCCcCCCceEchhcCeEEChhhCcc
Confidence 356679999998654 677889999999999774
No 257
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=35.35 E-value=16 Score=33.10 Aligned_cols=33 Identities=27% Similarity=0.553 Sum_probs=26.1
Q ss_pred cCCcccccCCCCCCCceecccceeEec-cchhhhc
Q 006616 316 CGNDRCADCGAPEPDWASLNLGVLVCI-ECSGVHR 349 (638)
Q Consensus 316 ~~n~~c~dC~~~~p~w~~~~~g~~~C~-~Csg~hr 349 (638)
|--.+|+-||-. .-+.|+|.|.-.|. .|-++|.
T Consensus 116 P~r~fCaVCG~~-S~ysC~~CG~kyCsv~C~~~Hn 149 (156)
T KOG3362|consen 116 PLRKFCAVCGYD-SKYSCVNCGTKYCSVRCLKTHN 149 (156)
T ss_pred CcchhhhhcCCC-chhHHHhcCCceeechhhhhcc
Confidence 445799999944 45889999999985 6888885
No 258
>KOG4305 consensus RhoGEF GTPase [Signal transduction mechanisms]
Probab=34.46 E-value=1.9e+02 Score=35.16 Aligned_cols=37 Identities=27% Similarity=0.304 Sum_probs=29.6
Q ss_pred EEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 006616 203 FRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSS 239 (638)
Q Consensus 203 F~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~ 239 (638)
|-+-.-+..|+|-|++..+++.|++.|.++-...++.
T Consensus 656 ~~~ga~~~~ftly~~s~~~r~~w~ekI~~aq~~~le~ 692 (1029)
T KOG4305|consen 656 YLGGARGASFTLYAESLNGRDQWVEKIKQAQKRSLER 692 (1029)
T ss_pred eeccccceEEEeeccchHHhhhHHhhhhHHHHhhhhh
Confidence 3344445789999999999999999999887666554
No 259
>PRK00085 recO DNA repair protein RecO; Reviewed
Probab=32.39 E-value=21 Score=35.80 Aligned_cols=32 Identities=41% Similarity=0.681 Sum_probs=26.8
Q ss_pred ccCCcccccCCCCCC-CceecccceeEeccchh
Q 006616 315 VCGNDRCADCGAPEP-DWASLNLGVLVCIECSG 346 (638)
Q Consensus 315 ~~~n~~c~dC~~~~p-~w~~~~~g~~~C~~Csg 346 (638)
.|.-..|+-||.+.. .|.+..-|-++|..|..
T Consensus 146 ~p~l~~C~~Cg~~~~~~~f~~~~gg~~c~~c~~ 178 (247)
T PRK00085 146 GLDLDHCAVCGAPGDHRYFSPKEGGAVCSECGD 178 (247)
T ss_pred ccchhhHhcCCCCCCceEEecccCCcccccccC
Confidence 355679999999865 78899999999999973
No 260
>KOG4047 consensus Docking protein 1 (p62dok) [Signal transduction mechanisms]
Probab=32.04 E-value=25 Score=38.15 Aligned_cols=28 Identities=11% Similarity=0.087 Sum_probs=21.5
Q ss_pred ceeEEEEEEeecCCC-CCCceeeEEEEec
Q 006616 98 QTIRQGYLSKRSSNL-RGDWKRRFFVLDS 125 (638)
Q Consensus 98 ~~~k~GyL~Kr~~~~-~~~WkrRwfvL~~ 125 (638)
.++|+|+++.+.... .|.|.++|.+|.+
T Consensus 7 ~~~k~g~~~~~~~r~~~k~~~~~~~~L~~ 35 (429)
T KOG4047|consen 7 CLVKDGVPDNHRNKFKVKNVRDDGAELGS 35 (429)
T ss_pred cccccCccchhhhhhccccccccceeeec
Confidence 356899999775443 3589999999985
No 261
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=31.93 E-value=78 Score=30.28 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=40.2
Q ss_pred HHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhh
Q 006616 582 PLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSD 635 (638)
Q Consensus 582 pLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle 635 (638)
-|..|+..|-...+.-.|++|.+++. ++|..|+..+| ..|+.+++.
T Consensus 146 hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynh--RkIL~yfi~ 191 (192)
T PF03158_consen 146 HLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNH--RKILDYFIR 191 (192)
T ss_pred HHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhH--HHHHHHhhc
Confidence 46789999999999999999998864 79999999998 789988764
No 262
>COG1734 DksA DnaK suppressor protein [Signal transduction mechanisms]
Probab=30.06 E-value=13 Score=32.90 Aligned_cols=33 Identities=27% Similarity=0.638 Sum_probs=22.7
Q ss_pred CCcccccCCCCCCC-ceecccceeEeccchhhhc
Q 006616 317 GNDRCADCGAPEPD-WASLNLGVLVCIECSGVHR 349 (638)
Q Consensus 317 ~n~~c~dC~~~~p~-w~~~~~g~~~C~~Csg~hr 349 (638)
.=..|.+||.+-|. =.-..-+..+|++|...|-
T Consensus 79 tYG~Ce~cG~~Ip~~RL~A~P~A~~Ci~cQ~~~E 112 (120)
T COG1734 79 TYGICEECGEPIPEARLEARPTARLCIECQERAE 112 (120)
T ss_pred CccchhccCCcCCHHHHhhCcchHHHHHHHHHHH
Confidence 33589999998552 1233346889999987663
No 263
>KOG3727 consensus Mitogen inducible gene product (contains ERM and PH domains) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.85 E-value=11 Score=41.74 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=32.9
Q ss_pred ceeecccceeecCCCCC---CCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHH
Q 006616 181 HTVNLLTSTIKVDADQS---DLRFCFRIISPT-KNYTLQAESALDQMDWIEKIT 230 (638)
Q Consensus 181 ~~i~l~~~~v~~~~~~~---~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~ 230 (638)
..|++++|.+.++-... .+.||.....+. ..+.|.|++|+....||.|-+
T Consensus 402 ~~i~l~gcev~~dV~~~~~k~~i~l~~~~~~~msEi~LRCd~E~QYA~WMAaCr 455 (664)
T KOG3727|consen 402 ISINLKGCEVTPDVNLSQQKYAIKLLVPTAEGMSEIWLRCDNEQQYARWMAACR 455 (664)
T ss_pred CchhhcCcccCCccccccccceEEEEeecCCccceeEEecCCHHHHHHHHHHhh
Confidence 34667777666543332 233454444454 468899999999999998754
No 264
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=27.93 E-value=1.5e+02 Score=32.58 Aligned_cols=68 Identities=21% Similarity=0.385 Sum_probs=39.2
Q ss_pred ccCCcccccCCCCC-CCceecc---cceeEeccchhh-hccCCCccceeEEee--cCCCccCHHHHHHHHHhchHHHH
Q 006616 315 VCGNDRCADCGAPE-PDWASLN---LGVLVCIECSGV-HRNLGVHISKVRSLT--LDVKVWEPSVITLFQSLGNAFAN 385 (638)
Q Consensus 315 ~~~n~~c~dC~~~~-p~w~~~~---~g~~~C~~Csg~-hr~lg~~~skvrsl~--ld~~~~~~~~~~~~~~~gN~~~n 385 (638)
...|..|-.||..+ -+|.|-+ .-.-+|.-|-.. |-.-+- ++++-. ++...++.|-..+|..+|-+.++
T Consensus 258 ~~d~~~c~~cg~~~H~q~~cp~r~~~~~n~c~~cg~~gH~~~dc---~~~~q~~~~~~~~~d~ey~~lm~e~~~a~~~ 332 (554)
T KOG0119|consen 258 DDDNRACRNCGSTGHKQYDCPGRIPNTTNVCKICGPLGHISIDC---KVNDQQMPMSSANFDREYASLMLELGHATSL 332 (554)
T ss_pred ccccccccccCCCccccccCCcccccccccccccCCcccccccC---CCcccccchhhhccCHHHHhhhccccchhcC
Confidence 34578999999986 3555322 222288888542 322221 222223 33334788888999888854443
No 265
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=27.31 E-value=2.1e+02 Score=23.68 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=31.3
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006616 14 LLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKR 52 (638)
Q Consensus 14 l~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 52 (638)
++.-++|-++.+...++.+++.++.-..++.++..++++
T Consensus 8 l~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~ 46 (92)
T PF14712_consen 8 LLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKE 46 (92)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999987776666666655543
No 266
>cd07160 NR_DBD_LXR DNA-binding domain of Liver X receptors (LXRs) family is composed of two C4-type zinc fingers. DNA-binding domain of Liver X receptors (LXRs) family is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. LXR interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. LXR operates as cholesterol sensor which protects cells from cholesterol overload by stimulating reverse cholesterol transport from peripheral tissues to the liver and its excretion in the bile. Oxidized cholesterol derivatives or oxysterols were identified as specific ligands for LXRs. LXR functions as a heterodimer with the retinoid X receptor (RXR) which may be activated by either LXR agonist or 9-cis retinoic acid, a specific RXR ligand. The LXR/RXR complex binds to a liver X receptor response element (LXRE) in the promoter region of target genes. The ideal LXRE seq
Probab=27.07 E-value=39 Score=29.06 Aligned_cols=31 Identities=35% Similarity=0.860 Sum_probs=25.8
Q ss_pred CCcccccCCCCCCCceecccceeEeccchhhhcc
Q 006616 317 GNDRCADCGAPEPDWASLNLGVLVCIECSGVHRN 350 (638)
Q Consensus 317 ~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~ 350 (638)
++..|.-||.+.- ...||+..|-.|.++.|-
T Consensus 17 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 47 (101)
T cd07160 17 GNEVCSVCGDKAS---GFHYNVLSCEGCKGFFRR 47 (101)
T ss_pred CCCCCeecCCcCc---ceEECcceehhhhhhhhh
Confidence 5678999998654 458999999999999874
No 267
>cd07171 NR_DBD_ER DNA-binding domain of estrogen receptors (ER) is composed of two C4-type zinc fingers. DNA-binding domain of estrogen receptors (ER) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. ER interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. Estrogen receptor is a transcription regulator that mediates the biological effects of hormone estrogen. The binding of estrogen to the receptor triggers the dimerization and the binding of the receptor dimer to estrogen response element, which is a palindromic inverted repeat: 5'GGTCAnnnTGACC-3', of target genes. Through ER, estrogen regulates development, reproduction and homeostasis. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, ER has a central well-conserved DNA binding domain (DBD), a variable N-terminal domain, a non-conserv
Probab=26.94 E-value=34 Score=28.16 Aligned_cols=30 Identities=23% Similarity=0.563 Sum_probs=24.9
Q ss_pred CcccccCCCCCCCceecccceeEeccchhhhcc
Q 006616 318 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRN 350 (638)
Q Consensus 318 n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~ 350 (638)
|..|.-||.+.- ...||+..|..|.+..|-
T Consensus 3 ~~~C~VCg~~~~---g~hyGv~sC~aC~~FFRR 32 (82)
T cd07171 3 THFCAVCSDYAS---GYHYGVWSCEGCKAFFKR 32 (82)
T ss_pred CCCCeecCCcCc---ceEECceeehhhHHhHHH
Confidence 567999997654 568999999999998874
No 268
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=26.60 E-value=39 Score=24.47 Aligned_cols=24 Identities=38% Similarity=0.782 Sum_probs=19.6
Q ss_pred ccccCCCCCCCceecccceeEecc
Q 006616 320 RCADCGAPEPDWASLNLGVLVCIE 343 (638)
Q Consensus 320 ~c~dC~~~~p~w~~~~~g~~~C~~ 343 (638)
+|.+|+....-|+++..|-..|..
T Consensus 1 ~C~~C~~~~~l~~CL~C~~~~c~~ 24 (50)
T smart00290 1 RCSVCGTIENLWLCLTCGQVGCGR 24 (50)
T ss_pred CcccCCCcCCeEEecCCCCcccCC
Confidence 599999988889888877777754
No 269
>cd07170 NR_DBD_ERR DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers. DNA-binding domain of estrogen related receptors (ERRs) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. ERR interacts with the palindromic inverted repeat, 5'GGTCAnnnTGACC-3', upstream of the target gene and modulates the rate of transcriptional initiation. The estrogen receptor-related receptors (ERRs) are transcriptional regulators, which are closely related to the estrogen receptor (ER) family. Although ERRs lack the ability to bind to estrogen and are so-called orphan receptors, they share target genes, co-regulators and promoters with the estrogen receptor (ER) family. By targeting the same set of genes, ERRs seem to interfere with the classic ER-mediated estrogen response in various ways. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription
Probab=24.65 E-value=40 Score=28.73 Aligned_cols=29 Identities=24% Similarity=0.619 Sum_probs=24.0
Q ss_pred cccccCCCCCCCceecccceeEeccchhhhcc
Q 006616 319 DRCADCGAPEPDWASLNLGVLVCIECSGVHRN 350 (638)
Q Consensus 319 ~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~ 350 (638)
..|.-||.+.- ...||+..|-.|.++.|-
T Consensus 5 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (97)
T cd07170 5 RLCLVCGDIAS---GYHYGVASCEACKAFFKR 33 (97)
T ss_pred CCCeecCCcCc---ceEECceeehhhhHHHHH
Confidence 46999997654 458999999999999874
No 270
>cd07173 NR_DBD_AR DNA-binding domain of androgen receptor (AR) is composed of two C4-type zinc fingers. DNA-binding domain of androgen receptor (AR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. To regulate gene expression, AR interacts with a palindrome of the core sequence 5'-TGTTCT-3' with a 3-bp spacer. It also binds to the direct repeat 5'-TGTTCT-3' hexamer in some androgen controlled genes. AR is activated by the androgenic hormones, testosterone or dihydrotestosterone, which are responsible for primary and for secondary male characteristics, respectively. The primary mechanism of action of ARs is by direct regulation of gene transcription. The binding of androgen results in a conformational change in the androgen receptor which causes its transport from the cytosol into the cell nucleus, and dimerization. The receptor dimer binds to a hormone response element of AR regulated genes and modul
Probab=24.07 E-value=39 Score=27.83 Aligned_cols=30 Identities=23% Similarity=0.606 Sum_probs=24.6
Q ss_pred CcccccCCCCCCCceecccceeEeccchhhhcc
Q 006616 318 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRN 350 (638)
Q Consensus 318 n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~ 350 (638)
...|.-||.+.- ..+||+..|..|.+..|-
T Consensus 3 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 32 (82)
T cd07173 3 QKTCLICGDEAS---GCHYGALTCGSCKVFFKR 32 (82)
T ss_pred CCCCeecCCcCc---ceEECcchhhhHHHHHHH
Confidence 456999997654 568999999999998874
No 271
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=24.04 E-value=32 Score=37.32 Aligned_cols=33 Identities=30% Similarity=0.648 Sum_probs=27.7
Q ss_pred cccCCcccccCCCCCCCceecccceeEeccchhhhc
Q 006616 314 RVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHR 349 (638)
Q Consensus 314 ~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr 349 (638)
..++.+.||-||.. -+|.-|||-.|..|-|.-.
T Consensus 265 ~~~~e~~CAVCgDn---AaCqHYGvRTCEGCKGFFK 297 (605)
T KOG4217|consen 265 SLSAEGLCAVCGDN---AACQHYGVRTCEGCKGFFK 297 (605)
T ss_pred CCCccceeeecCCh---HHhhhcCccccccchHHHH
Confidence 34568999999987 4699999999999999654
No 272
>KOG3518 consensus Putative guanine nucleotide exchange factor [General function prediction only]
Probab=23.72 E-value=60 Score=33.66 Aligned_cols=38 Identities=21% Similarity=0.387 Sum_probs=31.0
Q ss_pred cceEEEec---CCeeEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 006616 200 RFCFRIIS---PTKNYTLQAESALDQMDWIEKITGVIASLL 237 (638)
Q Consensus 200 r~cF~I~t---~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~ 237 (638)
+..|+|.+ |.-.|+|+|.|.++.+-||..+...|-...
T Consensus 396 plsfqv~~fdnpkaq~~fma~sme~kr~wm~elkrlildh~ 436 (521)
T KOG3518|consen 396 PLSFQVFHFDNPKAQHTFMAKSMEDKRLWMLELKRLILDHH 436 (521)
T ss_pred CceeEEEecCCcchhhhhhhhhhHHHHHHHHHHHHHHHhhh
Confidence 66788876 445799999999999999999998875433
No 273
>PF13119 DUF3973: Domain of unknown function (DUF3973)
Probab=23.21 E-value=39 Score=23.42 Aligned_cols=12 Identities=42% Similarity=1.077 Sum_probs=10.1
Q ss_pred eEeccchhhhcc
Q 006616 339 LVCIECSGVHRN 350 (638)
Q Consensus 339 ~~C~~Csg~hr~ 350 (638)
+-|+.||.+|-.
T Consensus 2 yYCi~Cs~~h~e 13 (41)
T PF13119_consen 2 YYCINCSEIHHE 13 (41)
T ss_pred EEEEEhHHhHHh
Confidence 569999999965
No 274
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=23.21 E-value=19 Score=39.73 Aligned_cols=91 Identities=13% Similarity=0.049 Sum_probs=62.7
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHcC-CCCcccCCCCCcHHHHHHHh---CCHHHHHHHHhCCCCCCCccCCCCCH---HH
Q 006616 545 EGCTLLHLACDSADIGMLELLLQYG-ANINATDSRGLTPLHRCILR---GKAMFAKLLLTRGADPRAVNREGKTS---LE 617 (638)
Q Consensus 545 ~G~TpLh~Aa~~g~~~~v~~Ll~~g-advn~~d~~G~TpLh~A~~~---g~~~~v~lLl~~gad~~~~d~~g~Tp---L~ 617 (638)
+-+|||++|+..|..+++.+++--+ .++|-.-.+|.. |.+... |..+.+..|+.+++..+..|..|.-+ ||
T Consensus 57 ~qR~~~~v~~~~Gs~~~~~~i~~~~~~e~~~~C~~~~~--~C~~~g~s~~~~e~~~hL~~~k~~~~~tda~g~~~~~v~~ 134 (528)
T KOG1595|consen 57 NQRRRRPVARRDGSFNYSPDIYCTKYDEVTGICPDGDE--HCAVLGRSVGDTERTYHLRYYKTLPCVTDARGNCVKNVLH 134 (528)
T ss_pred ccccccchhhhcCccccccceeecchhhccccCCCCcc--cchhcccccCCcceeEeccccccccCccccCCCcccCccc
Confidence 4689999999999999998887665 567766666666 555443 45677788888899998888877755 44
Q ss_pred HHHHcCCCc-HHHHHHHhhCC
Q 006616 618 LAVESNFAD-SEVLAILSDSH 637 (638)
Q Consensus 618 ~A~~~g~~d-~eiv~lLle~g 637 (638)
.|...+-.+ ..+++.|++.+
T Consensus 135 ~~~~~~~~~~r~~~~~l~e~~ 155 (528)
T KOG1595|consen 135 CAFAHGPNDLRPPVEDLLELQ 155 (528)
T ss_pred ccccCCccccccHHHHHHhcc
Confidence 444443211 24566666543
No 275
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=22.83 E-value=1.3e+02 Score=36.85 Aligned_cols=55 Identities=25% Similarity=0.343 Sum_probs=38.9
Q ss_pred eecccceeecCCCCCCCcceEEEecCC---eeEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 006616 183 VNLLTSTIKVDADQSDLRFCFRIISPT---KNYTLQAESALDQMDWIEKITGVIASLLSS 239 (638)
Q Consensus 183 i~l~~~~v~~~~~~~~rr~cF~I~t~~---rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~ 239 (638)
|.|..-.|+-.+. |.+--|-|.+.. ..|.|-|.|.+|+..||+.|+.+|.+.-.+
T Consensus 670 isL~~livRevAt--d~ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~s~~~~ 727 (1167)
T KOG3520|consen 670 ISLQKLIVREVAT--DEKAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVASCPRN 727 (1167)
T ss_pred eehHHHHHHHHhc--cccceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhCCcc
Confidence 4444334443232 445557777652 579999999999999999999999876554
No 276
>cd06968 NR_DBD_ROR DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers. DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. ROR interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. RORS are key regulators of many physiological processes during embryonic development. RORs bind as monomers to specific ROR response elements (ROREs) consisting of the consensus core motif AGGTCA preceded by a 5-bp A/T-rich sequence. There are three subtypes of retinoid-related orphan receptors (RORs), alpha, beta, and gamma, which differ only in N-terminal sequence and are distributed in distinct tissues. RORalpha plays a key role in the development of the cerebellum particularly in the regulation of the maturation and survival of Purkinje cells. RORbe
Probab=22.60 E-value=48 Score=28.11 Aligned_cols=30 Identities=30% Similarity=0.740 Sum_probs=24.8
Q ss_pred CcccccCCCCCCCceecccceeEeccchhhhcc
Q 006616 318 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRN 350 (638)
Q Consensus 318 n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~ 350 (638)
+..|.-||.+.- ...||+..|..|.+..|-
T Consensus 5 ~~~C~VCg~~~~---g~hyGv~sC~aC~~FFRR 34 (95)
T cd06968 5 VIPCKICGDKSS---GIHYGVITCEGCKGFFRR 34 (95)
T ss_pred ccCCcccCCcCc---ceEECceeehhhHHhhHH
Confidence 567999998654 458999999999999874
No 277
>COG2174 RPL34A Ribosomal protein L34E [Translation, ribosomal structure and biogenesis]
Probab=22.09 E-value=50 Score=27.51 Aligned_cols=35 Identities=26% Similarity=0.598 Sum_probs=24.9
Q ss_pred HHHcccCCcccccCCCCC-------CC-c---------eecccceeEeccch
Q 006616 311 VLRRVCGNDRCADCGAPE-------PD-W---------ASLNLGVLVCIECS 345 (638)
Q Consensus 311 ~~~~~~~n~~c~dC~~~~-------p~-w---------~~~~~g~~~C~~Cs 345 (638)
..++.|+-..|++||.+- |. . .+-.||-.+|..|.
T Consensus 27 ~~kK~~~~p~C~~cg~pL~Gi~r~RP~e~~r~skt~krp~RpYGG~lc~~c~ 78 (93)
T COG2174 27 YEKKKPTIPKCAICGRPLGGIPRGRPREFRRLSKTKKRPERPYGGYLCANCV 78 (93)
T ss_pred eeeccCCCCcccccCCccCCccCCCcHHHHhccccccCcCCCcCceecHHHH
Confidence 446788899999999951 11 1 13458889999885
No 278
>TIGR02890 spore_yteA sporulation protein, yteA family. Members of this predicted regulatory protein are found only in endospore-forming members of the Firmicutes group of bacteria, and in nearly every such species; Clostridium perfringens seems to be an exception. The member from Bacillus subtilis, the model system for the study of the sporulation program, has been designated both yteA and yzwB. Some (but not all) members of this family show a strong sequence match to PFAM family pfam01258 the C4-type zinc finger protein, DksA/TraR family, but only one of the four key Cys residues is conserved. All members of this protein family share an additional C-terminal domain. The function of proteins in this family is unknown. YteA was detected in mature spores of Bacillus subtilis by Kuwana, et al., and appears to be expressed under control of sigma-K.
Probab=22.01 E-value=32 Score=32.24 Aligned_cols=34 Identities=24% Similarity=0.486 Sum_probs=22.8
Q ss_pred cCCcccccCCCCCC--CceecccceeEeccchhhhcc
Q 006616 316 CGNDRCADCGAPEP--DWASLNLGVLVCIECSGVHRN 350 (638)
Q Consensus 316 ~~n~~c~dC~~~~p--~w~~~~~g~~~C~~Csg~hr~ 350 (638)
+.=..|.+||.+-| .+- +.-++..|+.|...+-.
T Consensus 84 G~YG~Ce~CGe~I~~~RL~-a~P~a~~Ci~Cq~~~E~ 119 (159)
T TIGR02890 84 GTYGICEVCGKPIPYERLE-AIPTATTCVECQNRKEV 119 (159)
T ss_pred CCCCeecccCCcccHHHHh-hCCCcchhHHHHHHhhh
Confidence 45567999999743 222 22357899999887643
No 279
>cd07163 NR_DBD_TLX DNA-binding domain of Tailless (TLX) is composed of two C4-type zinc fingers. DNA-binding domain of Tailless (TLX) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. TLX interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. TLX is an orphan receptor that is expressed by neural stem/progenitor cells in the adult brain of the subventricular zone (SVZ) and the dentate gyrus (DG). It plays a key role in neural development by promoting cell cycle progression and preventing apoptosis in the developing brain. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, TLX has a central well conserved DNA-binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD).
Probab=22.00 E-value=44 Score=28.12 Aligned_cols=30 Identities=27% Similarity=0.697 Sum_probs=24.8
Q ss_pred CcccccCCCCCCCceecccceeEeccchhhhcc
Q 006616 318 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRN 350 (638)
Q Consensus 318 n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~ 350 (638)
+..|.-||.+.- ..+||+..|-.|.+..|-
T Consensus 6 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 35 (92)
T cd07163 6 DIPCKVCGDRSS---GKHYGIYACDGCSGFFKR 35 (92)
T ss_pred CCCCcccCCcCc---ccEECceeeeeeeeEEee
Confidence 567999998654 458999999999998874
No 280
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=21.93 E-value=45 Score=23.57 Aligned_cols=25 Identities=32% Similarity=0.918 Sum_probs=18.0
Q ss_pred CcccccCCCCCCCceecccceeEeccch
Q 006616 318 NDRCADCGAPEPDWASLNLGVLVCIECS 345 (638)
Q Consensus 318 n~~c~dC~~~~p~w~~~~~g~~~C~~Cs 345 (638)
+..|.+||.|--+ ..=|..+|..|.
T Consensus 17 ~~~Cp~C~~PL~~---~k~g~~~Cv~C~ 41 (41)
T PF06677_consen 17 DEHCPDCGTPLMR---DKDGKIYCVSCG 41 (41)
T ss_pred cCccCCCCCeeEE---ecCCCEECCCCC
Confidence 5789999877433 345788888883
No 281
>PRK10778 dksA RNA polymerase-binding transcription factor; Provisional
Probab=21.71 E-value=28 Score=32.24 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=24.4
Q ss_pred ccCCcccccCCCCCCCc-eecccceeEeccchhhhccC
Q 006616 315 VCGNDRCADCGAPEPDW-ASLNLGVLVCIECSGVHRNL 351 (638)
Q Consensus 315 ~~~n~~c~dC~~~~p~w-~~~~~g~~~C~~Csg~hr~l 351 (638)
.+.-..|-+||.+-|.= .-..-++..|++|-..+-..
T Consensus 108 ~gtYG~Ce~CGe~I~~~RL~A~P~A~~CI~CQe~~E~~ 145 (151)
T PRK10778 108 DEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIR 145 (151)
T ss_pred CCCCceeccCCCcccHHHHhcCCCccccHHHHHHHHHH
Confidence 36778999999974311 11122467999999877543
No 282
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=21.62 E-value=53 Score=30.29 Aligned_cols=36 Identities=28% Similarity=0.667 Sum_probs=25.2
Q ss_pred hHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccC
Q 006616 307 KPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNL 351 (638)
Q Consensus 307 ~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~l 351 (638)
++++.+....+...|.-||- .+-++|..|+|-|+.+
T Consensus 88 ~lL~~~~~~~~~~~C~~Cgg---------~rfv~C~~C~Gs~k~~ 123 (147)
T cd03031 88 KLLKGIRARAGGGVCEGCGG---------ARFVPCSECNGSCKVF 123 (147)
T ss_pred HHHhhcccccCCCCCCCCCC---------cCeEECCCCCCcceEE
Confidence 34444444445667999984 4667999999999874
No 283
>KOG3836 consensus HLH transcription factor EBF/Olf-1 and related DNA binding proteins [Transcription]
Probab=21.09 E-value=23 Score=39.77 Aligned_cols=41 Identities=29% Similarity=0.285 Sum_probs=20.1
Q ss_pred ccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHc
Q 006616 528 GSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQY 568 (638)
Q Consensus 528 ~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ 568 (638)
.+..|...++.++..|..|.+|+|+++..|...+.+.++..
T Consensus 411 ~v~~lik~~~~~~~~d~f~~~p~~~~~~sgdp~~~~~~~~~ 451 (605)
T KOG3836|consen 411 LVFTLIKKGAHPNDDDKFGFTPLHIPQISGDPRIIQLLLNC 451 (605)
T ss_pred ceeeeecccCccchhcccccccccccCCCCCHHHhhhhhhh
Confidence 33344444455555555555555555555555555444443
No 284
>cd07161 NR_DBD_EcR DNA-binding domain of Ecdysone receptor (ECR) family is composed of two C4-type zinc fingers. DNA-binding domain of Ecdysone receptor (EcR) family is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. EcR interacts with highly degenerate pseudo-palindromic response elements, resembling inverted repeats of 5'-AGGTCA-3' separated by 1 bp, upstream of the target gene and modulates the rate of transcriptional initiation. EcR is present only in invertebrates and regulates the expression of a large number of genes during development and reproduction. EcR functions as a heterodimer by partnering with ultraspiracle protein (USP), the ortholog of the vertebrate retinoid X receptor (RXR). The natural ligands of EcR are ecdysteroids, the endogenous steroidal hormones found in invertebrates. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, EcRs h
Probab=20.95 E-value=54 Score=27.57 Aligned_cols=29 Identities=28% Similarity=0.718 Sum_probs=23.4
Q ss_pred cccccCCCCCCCceecccceeEeccchhhhcc
Q 006616 319 DRCADCGAPEPDWASLNLGVLVCIECSGVHRN 350 (638)
Q Consensus 319 ~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~ 350 (638)
..|.-||.+.- ...||+..|..|.+..|-
T Consensus 2 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 30 (91)
T cd07161 2 ELCLVCGDRAS---GYHYNALTCEGCKGFFRR 30 (91)
T ss_pred CCCeeCCCcCc---ceEECceeehhhHHHHHH
Confidence 35888997654 458999999999998874
No 285
>cd06966 NR_DBD_CAR DNA-binding domain of constitutive androstane receptor (CAR) is composed of two C4-type zinc fingers. DNA-binding domain (DBD) of constitutive androstane receptor (CAR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. CAR DBD interacts with CAR response element, a perfect repeat of two AGTTCA motifs with a 4 bp spacer upstream of the target gene, and modulates the rate of transcriptional initiation. The constitutive androstane receptor (CAR) is a ligand-regulated transcription factor that responds to a diverse array of chemically distinct ligands, including many endogenous compounds and clinical drugs. It functions as a heterodimer with RXR. The CAR/RXR heterodimer binds many common response elements in the promoter regions of a diverse set of target genes involved in the metabolism, transport, and ultimately, elimination of these molecules from the body. CAR is a closest mammalian
Probab=20.86 E-value=48 Score=28.04 Aligned_cols=28 Identities=25% Similarity=0.681 Sum_probs=22.8
Q ss_pred ccccCCCCCCCceecccceeEeccchhhhcc
Q 006616 320 RCADCGAPEPDWASLNLGVLVCIECSGVHRN 350 (638)
Q Consensus 320 ~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~ 350 (638)
.|.-||.+.- ...||+..|..|.++.|-
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aC~~FFRR 29 (94)
T cd06966 2 ICGVCGDKAL---GYNFNAITCESCKAFFRR 29 (94)
T ss_pred CCeeCCCcCc---ceEECcceeeeehheehh
Confidence 4888887644 458999999999999874
No 286
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=20.18 E-value=54 Score=23.78 Aligned_cols=26 Identities=23% Similarity=0.733 Sum_probs=18.7
Q ss_pred ccccCCCCCCCceecccceeEeccchh
Q 006616 320 RCADCGAPEPDWASLNLGVLVCIECSG 346 (638)
Q Consensus 320 ~c~dC~~~~p~w~~~~~g~~~C~~Csg 346 (638)
.|.=|+.+.++ .-.=+|.|+|.+|-.
T Consensus 1 ~CiiC~~~~~~-GI~I~~~fIC~~CE~ 26 (46)
T PF10764_consen 1 KCIICGKEKEE-GIHIYGKFICSDCEK 26 (46)
T ss_pred CeEeCCCcCCC-CEEEECeEehHHHHH
Confidence 47778888776 333468899999954
No 287
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=20.04 E-value=1.2e+02 Score=31.75 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=33.4
Q ss_pred CCCCcceEEEecCC--eeEEEEeCCHHHHHHHHHHHHHHHHHH
Q 006616 196 QSDLRFCFRIISPT--KNYTLQAESALDQMDWIEKITGVIASL 236 (638)
Q Consensus 196 ~~~rr~cF~I~t~~--rt~~lqA~se~e~~~Wi~ai~~~i~~~ 236 (638)
+.-|-+.|+|..-+ .+-++++.+.++..+|+++|..-|..+
T Consensus 221 dklRqNAFeV~aldGvstGii~c~~a~d~~dWL~ait~Ni~~L 263 (505)
T KOG3549|consen 221 DKLRQNAFEVRALDGVSTGIIHCDEAADLSDWLKAITDNIVGL 263 (505)
T ss_pred hhhhhccceEEeecccccceeEEhhhhHHHHHHHHHHHHHHHH
Confidence 33556889999876 467899999999999999998887543
Done!