Query 006618
Match_columns 638
No_of_seqs 302 out of 1656
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 12:02:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006618.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006618hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1648 Uncharacterized conser 100.0 9.2E-56 2E-60 458.7 8.6 519 39-604 248-803 (813)
2 KOG2224 Uncharacterized conser 100.0 2.2E-51 4.8E-56 420.4 28.2 300 309-610 405-736 (781)
3 KOG4567 GTPase-activating prot 100.0 2.6E-43 5.6E-48 351.0 22.0 286 314-605 12-362 (370)
4 KOG2197 Ypt/Rab-specific GTPas 100.0 1.2E-42 2.6E-47 381.4 13.6 298 309-607 148-445 (488)
5 KOG1092 Ypt/Rab-specific GTPas 100.0 9.4E-41 2E-45 344.2 19.2 278 322-610 173-480 (484)
6 KOG2058 Ypt/Rab GTPase activat 100.0 1.8E-40 3.8E-45 353.7 21.1 255 309-588 121-384 (436)
7 smart00164 TBC Domain in Tre-2 100.0 2.5E-38 5.5E-43 312.3 17.9 195 335-548 1-197 (199)
8 KOG2223 Uncharacterized conser 100.0 9E-38 2E-42 321.6 21.7 279 311-604 274-556 (586)
9 PF12068 DUF3548: Domain of un 100.0 3.3E-36 7.1E-41 294.9 14.5 148 42-189 3-200 (213)
10 COG5210 GTPase-activating prot 100.0 5.2E-35 1.1E-39 326.7 23.6 246 308-573 180-430 (496)
11 PF00566 RabGAP-TBC: Rab-GTPas 100.0 7.2E-34 1.6E-38 282.8 18.9 212 341-570 1-214 (214)
12 KOG1093 Predicted protein kina 100.0 3.1E-29 6.7E-34 266.8 17.6 247 327-607 345-594 (725)
13 KOG2222 Uncharacterized conser 100.0 3.6E-29 7.9E-34 259.8 16.9 262 313-600 148-415 (848)
14 KOG1091 Ypt/Rab-specific GTPas 100.0 3.4E-27 7.4E-32 251.5 19.7 261 342-608 28-367 (625)
15 KOG4436 Predicted GTPase activ 99.9 7.8E-26 1.7E-30 248.2 15.8 256 312-590 550-810 (948)
16 KOG4347 GTPase-activating prot 99.9 1.5E-25 3.4E-30 242.9 16.7 247 311-585 173-423 (671)
17 KOG1102 Rab6 GTPase activator 99.9 1.2E-22 2.6E-27 219.8 14.3 249 311-587 117-368 (397)
18 KOG2595 Predicted GTPase activ 99.9 1.1E-21 2.5E-26 198.5 14.7 257 325-611 46-308 (395)
19 KOG2221 PDZ-domain interacting 99.8 8.4E-21 1.8E-25 181.5 2.7 192 309-524 73-267 (267)
20 KOG3636 Uncharacterized conser 99.5 1.6E-13 3.5E-18 143.3 15.5 180 422-606 89-274 (669)
21 KOG4436 Predicted GTPase activ 99.5 2.4E-13 5.1E-18 150.8 12.1 239 324-585 171-419 (948)
22 KOG2801 Probable Rab-GAPs [Int 99.3 8.3E-11 1.8E-15 117.6 16.0 249 325-605 30-295 (559)
23 KOG2197 Ypt/Rab-specific GTPas 97.2 0.00029 6.2E-09 78.7 4.6 79 307-385 46-124 (488)
24 PF14961 BROMI: Broad-minded p 96.9 0.015 3.3E-07 69.4 14.9 173 426-602 1084-1276(1296)
25 KOG2224 Uncharacterized conser 92.2 0.045 9.7E-07 58.4 0.3 34 442-475 566-599 (781)
26 PF08567 TFIIH_BTF_p62_N: TFII 63.4 51 0.0011 27.5 8.0 65 64-142 12-78 (79)
27 KOG1102 Rab6 GTPase activator 56.8 2.8 6E-05 46.1 -0.9 128 402-563 2-129 (397)
28 PF14472 DUF4429: Domain of un 51.7 15 0.00032 31.8 3.0 31 104-134 27-58 (94)
29 COG1507 Uncharacterized conser 43.3 33 0.00071 32.0 4.0 31 110-141 20-53 (167)
30 PF11605 Vps36_ESCRT-II: Vacuo 35.6 1.8E+02 0.0038 24.9 7.1 72 44-131 15-88 (89)
31 PF04683 Proteasom_Rpn13: Prot 32.6 2.6E+02 0.0056 23.7 7.6 56 61-126 12-68 (85)
32 PF08109 Antimicrobial14: Lact 30.5 33 0.00072 22.4 1.3 16 442-457 3-18 (31)
33 cd01047 ACSF Aerobic Cyclase S 26.9 1E+02 0.0022 32.4 4.9 61 504-564 161-225 (323)
34 TIGR02029 AcsF magnesium-proto 24.6 1.2E+02 0.0026 32.1 4.9 61 504-564 171-235 (337)
35 CHL00185 ycf59 magnesium-proto 23.5 1.2E+02 0.0027 32.2 4.8 61 504-564 177-241 (351)
36 PRK03636 hypothetical protein; 23.0 83 0.0018 30.7 3.2 61 111-173 40-100 (179)
37 PLN02508 magnesium-protoporphy 23.0 1.3E+02 0.0028 32.0 4.8 61 504-564 177-241 (357)
38 PRK13654 magnesium-protoporphy 21.8 1.1E+02 0.0023 32.7 3.9 60 505-564 182-245 (355)
No 1
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=100.00 E-value=9.2e-56 Score=458.73 Aligned_cols=519 Identities=23% Similarity=0.367 Sum_probs=391.1
Q ss_pred CCCCcEEEEeeCceEEccCCcccccccceEEEEeeCCceeEEeEecCCCCCCccccccccCcceeee--eeCCCeeEEEE
Q 006618 39 ESEGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRA--VPFTEVRSIRR 116 (638)
Q Consensus 39 ~~~~~~llf~Ks~V~vhpt~~~~~~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~y~~~~--v~ls~I~sI~~ 116 (638)
+.++++|||+||+|.|+|.. +++.+||||+|+|..+.++|+|+||+.|++....++.+++.||.++ |++.||++|||
T Consensus 248 qnsr~~llygkN~vlvqPk~-dmeavpgYlSLhq~ad~ltLKWtPNQLMngs~gds~~EksvyWdya~~i~~~~ivyiHc 326 (813)
T KOG1648|consen 248 QNSRTRLLYGKNHVLVQPKS-DMEAVPGYLSLHQFADGLTLKWTPNQLMNGSSGDSSGEKSVYWDYAINIEMQDIVYIHC 326 (813)
T ss_pred hcchhhhhcccccccccCch-hhhcccceeeHhhhhccceeecChHHhhcCCCCCccccceeeecceeeeehhheEEEEe
Confidence 34788999999999999986 8999999999999999999999999999998888888999999886 88999999999
Q ss_pred ecCCCCceEEEEEeCCCCcCCceEeecCCh-HHHHHHHHhccccccccCCCceEEEcCCc---hhhhhhhcccCCCcccc
Q 006618 117 HTPAFGWQYIIVVLSSGLAFPPLYFYTGGV-REFLATIKQHVLLVRSVEDANVFLVNDFD---NRLQRTLSSLELPRAVS 192 (638)
Q Consensus 117 ~~p~~g~~~~il~~~dG~~~P~L~F~~GG~-~~fl~~L~~~~~l~rs~~d~~l~lv~~~~---~~l~~~~~~~~~~~~~~ 192 (638)
|+......++++|.+||++.|||+|+.||| .+||+||++ ++|+++++||++|.+.+.. +.|++- |+........
T Consensus 327 HQq~eSggtlvlVsqdGiQrpPf~fP~GgHll~FLScLEn-GLlP~gqLdPPLW~q~gKgKvfPkLRKR-S~~~s~~~~~ 404 (813)
T KOG1648|consen 327 HQQDESGGTLVLVSQDGIQRPPFQFPAGGHLLAFLSCLEN-GLLPLGQLDPPLWVQTGKGKVFPKLRKR-STAVSNPAME 404 (813)
T ss_pred ecccCCCCeEEEEecccccCCCccCCCCchhHHHHHHHHh-cCCcccccCCccccccCCcccchhhhhc-CcccCCchhh
Confidence 999766689999999999999999999999 799999997 9999999999999997732 455432 2211111111
Q ss_pred c-cCCCCCCcccC-CCCCcccccccC---------CCCC------CCCccccccccc---ccCcCCCchhhhHHHHHhhH
Q 006618 193 I-ASGSSTPVSIG-DSPTNVNLERTN---------GGLG------HDSHSISQFHGR---QKQKAQDPARDISIQVLEKF 252 (638)
Q Consensus 193 ~-~~~~~~~~~~~-~~~~~~~~~~~~---------~~~~------~~~~~~~~~~~~---~~~~~~~p~~~~~~~~l~~~ 252 (638)
. ....++||++. .+++..+....| ...| +...+++...+. .......+. .+.+.++
T Consensus 405 ~~~~~atDYVFRiiypg~~~E~~p~D~~d~~~~~~~p~wh~~P~~ssc~scS~s~Sp~~~~s~~sc~~~-r~pl~ll--- 480 (813)
T KOG1648|consen 405 MGTGRATDYVFRIIYPGSGVEPAPEDIEDPLFGPSAPTWHSPPIHSSCNSCSLSNSPYIVDSVDSCVNF-RLPLGLL--- 480 (813)
T ss_pred cCcccccceEEEEeecCCCCCCCchhhhccccCCCCcccCCCCcccccccccCCCCCCccccccccccc-cchHHHH---
Confidence 0 11234666654 223211111100 0111 112222222111 111223333 3456665
Q ss_pred hhHHHHHHHHhhhhhhccCCCCCCccccc-----ccccccccCC---CCCCcchhhhcccCCCCCCHHHHHHhhccCCCC
Q 006618 253 SLVTKFARETTSQLFRENHSNGFGAFEKK-----FDSQSALDFD---HKASYDTETIVNEIPVAPDPVEWTTFLDNEGRV 324 (638)
Q Consensus 253 s~~~~~~r~~~~~~~~~~~~~g~~~~~r~-----~~~~~~~~~~---~~~~~~~~~~~~e~~~~~~~~~W~~~l~~~g~~ 324 (638)
|.+|++|+.+|+| |||.+|||| ||...++++. +....+ ....+++.-|+++..+. .
T Consensus 481 --C~sMk~QI~sRAF-----YGWLaycRHLsTvRTHLsaLV~h~~~~pD~pcd-------a~~glt~~~W~qy~~d~--t 544 (813)
T KOG1648|consen 481 --CQSMKNQIMSRAF-----YGWLAYCRHLSTVRTHLSALVDHKTLIPDDPCD-------ASAGLTEKFWKQYRADP--T 544 (813)
T ss_pred --HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcccccCCCCCCC-------ccccccHHHHHHHhcCC--c
Confidence 9999999999999 999999999 6777777651 111111 12348899999987552 3
Q ss_pred CChHHHHHHHHhCCCChhhHHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhhCChHHHhhhhhhcccccccc
Q 006618 325 MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLID 404 (638)
Q Consensus 325 ~~~~~lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~e~~~~I~ 404 (638)
+..-++.....+||..+..|+.+|+++++.+..++...+.+.........|.+....|+. -..++|+
T Consensus 545 ~~e~~~l~~~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~~l~~~~~-------------~~~~~~~ 611 (813)
T KOG1648|consen 545 IEEWRVLEAEVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDRNLITLFR-------------ANLHRID 611 (813)
T ss_pred hHHHHHHHHHHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHHHHHHHHh-------------hheeeec
Confidence 444455555789999999999999999999888877666566666667788877666543 3367999
Q ss_pred ccccccCCCCccccCCCChhhHHHHHHHHhhhhhcCCCCcccchhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCCCc
Q 006618 405 KDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQ 484 (638)
Q Consensus 405 kDV~RT~~~~~~f~~~~~~~~~~L~~IL~~y~~~npdiGY~QGM~dl~a~Ll~v~~dE~~aFw~f~~lm~~~~~~f~~~~ 484 (638)
||+.|++++..+|.+.+ +++. +++..+|...|-+-||.|||+|+.+|++..++||..+--||.-+|-+-+..|.. .
T Consensus 612 kd~e~~~~~~~~fs~~~--~les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s~~~~~q~~~~~q-~ 687 (813)
T KOG1648|consen 612 KDVERCDRNLMFFSNKD--NLES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFSLLMLRQRGKFPQ-R 687 (813)
T ss_pred chhhhCcchheeecCCc--chhh-heeeeeeeccccccccccchhhccCCcCCChhhcccccCCCcHHHHHhcccCCC-C
Confidence 99999999999999766 4566 899999999999999999999999999999999988888998888776666664 4
Q ss_pred chhhHHHHHHHHHHHhhCHHHHHHHHHCCCCchhhhHHHHHHhcCcCCChhhHHHHHHHHHhhc---CChhHHHHHHHHH
Q 006618 485 NGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHY---LSEHLHLYVCVAI 561 (638)
Q Consensus 485 ~gm~~~~~~l~~Ll~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~ref~~~~vlrLWD~~~~~~---~~~~fll~valAi 561 (638)
+||...+..++ +++..+|-.. -+ +.. .-..|+||+.-|+++++.+.....|+++|... ....|-+|+++|.
T Consensus 688 ~~~~~~l~~~r-~~~v~~~l~s-~i---d~~-qa~~f~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~ 761 (813)
T KOG1648|consen 688 PGMSKCLLNLR-LIQVVDPLIS-DI---DYA-QALSFRWFLLDFKRELSYECTYKVWEVIWAAQRLRITDDFAIFFGLAT 761 (813)
T ss_pred CCccccccccc-chhhhcchhc-ch---hhh-hhcceeeeccCcccccCCCCcceeeEeeccccccccCcchhhhhhhHH
Confidence 67777777676 8888888322 11 111 12348999999999999999999999999842 2346889999998
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 006618 562 LKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCI 604 (638)
Q Consensus 562 L~~~r~~Ll~~~~dfdeilk~l~~l~~~~d~~~lL~~A~~L~~ 604 (638)
..+.+.++-++.+..+.++|+|+.....|-+.++..|..-..
T Consensus 762 -~~~~~~~~t~~~~~t~~i~~~~~~~e~~~c~r~~~~~~~~~~ 803 (813)
T KOG1648|consen 762 -TNYHDVLITNNFDYTDMIKFFNEMAERHDCSRLLSSARTHVK 803 (813)
T ss_pred -HhhHHHHhhcccchHHHHHHHHHHHhhhhhHHHHhcCcchHH
Confidence 666777777777899999999999888887777766654333
No 2
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.2e-51 Score=420.37 Aligned_cols=300 Identities=38% Similarity=0.746 Sum_probs=267.5
Q ss_pred CCHHHHHH-hhccCCCCCChHHHHHHHHhCCCChhhHHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhh-hCC
Q 006618 309 PDPVEWTT-FLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ-SIS 386 (638)
Q Consensus 309 ~~~~~W~~-~l~~~g~~~~~~~lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~-~~~ 386 (638)
+...-|-. .++.-|++-+.-+||+.+|.|||..++|++||+|||.+|...||.++|+.+...++++|+.+.++-. +++
T Consensus 405 i~~n~~~~t~lne~gqiedd~~lrk~iffggid~sir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkrlysms 484 (781)
T KOG2224|consen 405 IGTNAFLGTHLNEKGQIEDDLKLRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKRLYSMS 484 (781)
T ss_pred hhHHHHHHhhhhhcccchhHHHhhhhheeccchhhhhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 44566776 6777788888889999999999999999999999999999999999999999999999999876543 666
Q ss_pred hHHHhhhhhhccccccccccccccCCCCccccCCCChhhHHHHHHHHhhhhhcCCCCcccchhHHHHHHHHhcCCHHHHH
Q 006618 387 PEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSF 466 (638)
Q Consensus 387 ~~~~~~~~~~~e~~~~I~kDV~RT~~~~~~f~~~~~~~~~~L~~IL~~y~~~npdiGY~QGM~dl~a~Ll~v~~dE~~aF 466 (638)
+++ ...-|+.....++|||-||+|+++||.+++||+.+.|++||..|+.|||.+||.|||+|++||.|.-.++|.++|
T Consensus 485 pee--h~~fwknvq~tvdkdvvrtdrnn~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqnesetf 562 (781)
T KOG2224|consen 485 PEE--HIAFWKNVQFTVDKDVVRTDRNNPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESETF 562 (781)
T ss_pred HHH--HHHHHhheEEEEecceeeccCCCCcccCCCCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccchh
Confidence 654 344677777889999999999999999999999999999999999999999999999999999999888999999
Q ss_pred HHHHHHHHhcCC------------------------C--CC--CCcchhhHHHHHHHHHHHhhCHHHHHHHHHCCCC--c
Q 006618 467 WCFVALMERLGP------------------------N--FN--RDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCL--N 516 (638)
Q Consensus 467 w~f~~lm~~~~~------------------------~--f~--~~~~gm~~~~~~l~~Ll~~~dP~L~~hL~~~~i~--~ 516 (638)
|||+++|+.|.. | |. .....|..++..+++||+++.|.+|+||.++|-+ .
T Consensus 563 wcfvglmqgmsdlvapilaevldesdtfwcfvglmqna~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~le 642 (781)
T KOG2224|consen 563 WCFVGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDGLE 642 (781)
T ss_pred hhhhhhhccchhhhhhHHHhhhccccchhhhhhhhcceEEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcchhh
Confidence 999999985421 1 21 2235688899999999999999999999999755 4
Q ss_pred hhhhHHHHHHhcCcCCChhhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHH
Q 006618 517 YFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAIL 596 (638)
Q Consensus 517 ~~f~~rWfl~lF~ref~~~~vlrLWD~~~~~~~~~~fll~valAiL~~~r~~Ll~~~~dfdeilk~l~~l~~~~d~~~lL 596 (638)
..||-||++.+|+||||-..++|||+.-|++|....|++|+|+||+..+.+.+++.+.-.|+++-+|.+|++.||-+-+|
T Consensus 643 llfchrwlllcfkref~ea~airiweacwa~y~tdyfhlficlaiiaiy~ddvi~q~l~~demllhf~nlam~mdgelil 722 (781)
T KOG2224|consen 643 LLFCHRWLLLCFKREFPEAEAIRIWEACWAHYLTDYFHLFICLAIIAIYADDVIAQNLAPDEMLLHFGNLAMHMDGELIL 722 (781)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHhhcCchhHHHhhhhhhhhcCchhhH
Confidence 67999999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred HHHHHHHHHhccCC
Q 006618 597 RDAEALCICAGENG 610 (638)
Q Consensus 597 ~~A~~L~~~~~e~~ 610 (638)
.+|+.|..+++-..
T Consensus 723 rkar~ll~qfr~lp 736 (781)
T KOG2224|consen 723 RKARGLLHQFRLLP 736 (781)
T ss_pred HHHHHHHHHHhhcC
Confidence 99999998876554
No 3
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=2.6e-43 Score=350.96 Aligned_cols=286 Identities=28% Similarity=0.502 Sum_probs=244.2
Q ss_pred HHHhhccCCCCCChHHHHHHHHhCCCC--hhhHHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhhCC-----
Q 006618 314 WTTFLDNEGRVMDSNALRKRIFYGGVD--HKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSIS----- 386 (638)
Q Consensus 314 W~~~l~~~g~~~~~~~lk~~i~~~GIp--~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~----- 386 (638)
-+..+..-...++.+++|+ ++..|+| ..+|+.+|+.|||++|.+.+.+ .....+++..|.....+-..-+
T Consensus 12 ~edvl~~~~~~id~kelr~-~~~~g~p~~~~lR~~~WkllL~Yl~~er~~w--~s~La~~R~~Y~q~i~e~v~epg~~~~ 88 (370)
T KOG4567|consen 12 IEDVLNPADDTIDLKELRK-LCFYGVPDDASLRPLVWKLLLGYLPPERSKW--TSFLAKKRSLYKQFIEEIVDEPGKKDN 88 (370)
T ss_pred HHHhhccccchhhHHHHHH-HhhcCCCCccchhHhHHHHHHhhcChhhhhh--HHHHHHHHHHHHHHHHHhccCcccccc
Confidence 3444444333489999999 6789999 5899999999999999887665 5677888899988877643110
Q ss_pred -------------------hHHHhhhhhhccccccccccccccCCCCccccCCCC-------------------------
Q 006618 387 -------------------PEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDN------------------------- 422 (638)
Q Consensus 387 -------------------~~~~~~~~~~~e~~~~I~kDV~RT~~~~~~f~~~~~------------------------- 422 (638)
....+.+.+.++...||++||.||.|...+|+....
T Consensus 89 ~~~v~~~D~~~dhPls~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~g 168 (370)
T KOG4567|consen 89 SKKVDSNDTDEDHPLSLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRLG 168 (370)
T ss_pred ccccccCcccccCCCCCCchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcccc
Confidence 122444555667789999999999999999875311
Q ss_pred hhhHHHHHHHHhhhhhcCCCCcccchhHHHHHHHHhcCC----------HHHHHHHHHHHHHhcCCCCCC----Ccchhh
Q 006618 423 PNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMED----------ESQSFWCFVALMERLGPNFNR----DQNGMH 488 (638)
Q Consensus 423 ~~~~~L~~IL~~y~~~npdiGY~QGM~dl~a~Ll~v~~d----------E~~aFw~f~~lm~~~~~~f~~----~~~gm~ 488 (638)
-......|||..|+..||.+|||||||.|+||||+|+-+ |+|||+||+.+|..+++||.. ..-|++
T Consensus 169 l~~~~~erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseirDnf~k~LDdS~~GI~ 248 (370)
T KOG4567|consen 169 LTRFAAERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIRDNFIKTLDDSVGGIH 248 (370)
T ss_pred hhhhHHHHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHHHHHHHhccccccchH
Confidence 112235789999999999999999999999999999953 899999999999999998863 356888
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHCCCCchhhhHHHHHHhcCcCCChhhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHH
Q 006618 489 SQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNK 568 (638)
Q Consensus 489 ~~~~~l~~Ll~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~ref~~~~vlrLWD~~~~~~~~~~fll~valAiL~~~r~~ 568 (638)
..+..+..+|+.+|-+||.||+..++.|.+|+|||++++++.|||+++|+||||.++++.....|++++|+|||...|+.
T Consensus 249 ~~Msr~~~~lk~~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rfd~Ll~iCcsmlil~Re~ 328 (370)
T KOG4567|consen 249 FLMSRLSELLKKHDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRFDFLLYICCSMLILVRER 328 (370)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999998888899999999999999999
Q ss_pred HhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Q 006618 569 IMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCIC 605 (638)
Q Consensus 569 Ll~~~~dfdeilk~l~~l~~~~d~~~lL~~A~~L~~~ 605 (638)
|++. ||+..++.+++.| ..|+..++..|..|...
T Consensus 329 il~~--DF~~nmkLLQ~yp-~tdi~~~l~~A~~Lr~~ 362 (370)
T KOG4567|consen 329 ILEG--DFTVNMKLLQNYP-TTDISKMLAVADSLRDK 362 (370)
T ss_pred HHhc--chHHHHHHHhcCC-CCCHHHHHHHHHHHHhc
Confidence 9976 9999999999998 99999999999999854
No 4
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-42 Score=381.40 Aligned_cols=298 Identities=50% Similarity=0.825 Sum_probs=278.3
Q ss_pred CCHHHHHHhhccCCCCCChHHHHHHHHhCCCChhhHHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhhCChH
Q 006618 309 PDPVEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 388 (638)
Q Consensus 309 ~~~~~W~~~l~~~g~~~~~~~lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~ 388 (638)
++.++|......++++...-..+.+++++|+-+.+|+++|++++++++|+.+..+|...... ...|.+.+.+|......
T Consensus 148 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~qW~~~~~~ 226 (488)
T KOG2197|consen 148 LTLEEYNSNAMREGRLDESVHQRERIFSGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKL-TDEYFRLKLQWSSTSPE 226 (488)
T ss_pred chhhhhhhhhhhccccccchhhhheecccccccchhhhhhhhhhcccCcccccccccccccc-cccHhhhhhhheecccc
Confidence 68899999888888886655555578999998899999999999999999999998888877 89999999999988777
Q ss_pred HHhhhhhhccccccccccccccCCCCccccCCCChhhHHHHHHHHhhhhhcCCCCcccchhHHHHHHHHhcCCHHHHHHH
Q 006618 389 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWC 468 (638)
Q Consensus 389 ~~~~~~~~~e~~~~I~kDV~RT~~~~~~f~~~~~~~~~~L~~IL~~y~~~npdiGY~QGM~dl~a~Ll~v~~dE~~aFw~ 468 (638)
+......+.+....|.+||.||++.+.+|..+.+++...|.+||.+|++|++++||||||+|+++|++.++++|.+||||
T Consensus 227 ~~~~~~~~~~~~~~i~~dv~rtDr~~~~~~~~~n~~~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~de~~aFwc 306 (488)
T KOG2197|consen 227 QSPESEGYLERKSRIEKDVGRTDRSLEFYEGEENPHLARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMEDEVEAFWC 306 (488)
T ss_pred ccccccchhhhhhhhhhhccccchhhhhhhcccccCHHHHHHHHhhcccccCccccccCchhhcCcceeeecCchHHHHH
Confidence 66555556677789999999999999999998877899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCcchhhHHHHHHHHHHHhhCHHHHHHHHHCCCCchhhhHHHHHHhcCcCCChhhHHHHHHHHHhhc
Q 006618 469 FVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHY 548 (638)
Q Consensus 469 f~~lm~~~~~~f~~~~~gm~~~~~~l~~Ll~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~ref~~~~vlrLWD~~~~~~ 548 (638)
|+.||+++..||..++.||+.++..+..+++..||.||.||++.+....+|||||++++|.|||.++++++||+++|+..
T Consensus 307 Fv~fm~~~~~nF~~d~~~~~~Ql~~~~~li~~~dp~l~~hLe~~d~~~~~f~fr~l~v~frrEf~~ed~l~LWEvlw~~~ 386 (488)
T KOG2197|consen 307 FVGFMDRLRHNFRIDQSGMQTQLAQLSSLIQELDPRLYQHLEKLDAGDLFFCFRMLLVPFRREFEFEDSLRLWEVLWTDL 386 (488)
T ss_pred HHHHHHHHhhcCccccccHHHHhhhhhhhccccCHHHHhhccccCCCccceeeehhhcccccccccccHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhc
Q 006618 549 LSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAG 607 (638)
Q Consensus 549 ~~~~fll~valAiL~~~r~~Ll~~~~dfdeilk~l~~l~~~~d~~~lL~~A~~L~~~~~ 607 (638)
++.+|+++++.|||....+.|+.+.+++++++++++.++.+.|+..++..|..+..+..
T Consensus 387 ~~~~f~~~~~~~~l~~~~~~l~~~~~~~~e~l~~i~~~~~~~d~~~~~~~A~~~~~~~k 445 (488)
T KOG2197|consen 387 PSPHFHLYVAPAILNKDPQTLMEQGKSFNEVLKHVNLLSEKADVLWVLVRAEALERQNK 445 (488)
T ss_pred ccchHHHHHHHhhhhcchHHHHhcCccchhHHhhcccccccchhhhHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999876643
No 5
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.4e-41 Score=344.18 Aligned_cols=278 Identities=27% Similarity=0.520 Sum_probs=242.2
Q ss_pred CCCCChHHHHHHHHhCCCChhhHHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhhCChHHHhhhhhhccccc
Q 006618 322 GRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKG 401 (638)
Q Consensus 322 g~~~~~~~lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~e~~~ 401 (638)
+..++.++||+ ++++|||+..|+.+|+.|+|+.|..+. -|+...+.++.+|..++.++....... ....+..+
T Consensus 173 ~~~id~~~Lr~-l~w~Gvp~~~Rp~~Wkll~gylp~n~~--rr~~~l~~Kr~eY~~~v~~~~~~~~~~----~~~~d~~r 245 (484)
T KOG1092|consen 173 SPIIDLEKLRK-LCWNGVPSKMRPIVWKLLSGYLPPNSD--RREGTLQRKRKEYVDSVVQYFDSLTNG----DEDQDTWR 245 (484)
T ss_pred cccccHHHHHH-HccCCCCccccCccceeeecccCcchh--hhhhhHHHHHHHHHHHHHHHhccCCCc----cccCcccc
Confidence 34588899999 789999999999999999999987754 457778889999999998876543321 12334568
Q ss_pred cccccccccCCCCccccCCCChhhHHHHHHHHhhhhhcCCCCcccchhHHHHHHHHhcCC--------------------
Q 006618 402 LIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMED-------------------- 461 (638)
Q Consensus 402 ~I~kDV~RT~~~~~~f~~~~~~~~~~L~~IL~~y~~~npdiGY~QGM~dl~a~Ll~v~~d-------------------- 461 (638)
||.-|++|+.|..++|..+. .++.+.|||..++.++|..||+||.+|++.|++.++.-
T Consensus 246 QI~id~prm~p~~~l~q~~~--vq~~lerIl~iwairhpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~l~~E 323 (484)
T KOG1092|consen 246 QIPIDIPRMNPHIPLFQQKI--VQEMLERILYIWAIRHPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSLLPAE 323 (484)
T ss_pred ccccCCCCCCccccchhhHH--HHHHHHHHHHHHHHhcccccccccceeeechhhhhhhHhhcCccccccccchhhccHH
Confidence 99999999999999998644 67999999999999999999999999999999988731
Q ss_pred -----HHHHHHHHHHHHHhcCCCCCCCcchhhHHHHHHHHHHHhhCHHHHHHHHHCCCCchhhhHHHHHHhcCcCCChhh
Q 006618 462 -----ESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEK 536 (638)
Q Consensus 462 -----E~~aFw~f~~lm~~~~~~f~~~~~gm~~~~~~l~~Ll~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~ref~~~~ 536 (638)
|++||||+.+|++.+..||...|+|++.....|+.|++.+|+.|++||+++|++...|+|||+-++|.||||+..
T Consensus 324 ~~~~iEADsyWClskLLD~IQDNYtfaQpGIq~kV~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmRE~pl~~ 403 (484)
T KOG1092|consen 324 NAEDIEADAYWCLSKLLDGIQDNYTFAQPGIQRKVKNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMREFPLRC 403 (484)
T ss_pred HHhhhhhhHHHHHHHHHHHhhhhhhhcChhHHHHHHHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHhhccchh
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHHhccCC
Q 006618 537 TMRLWEVLWTHYLS-EHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGR----IDLDAILRDAEALCICAGENG 610 (638)
Q Consensus 537 vlrLWD~~~~~~~~-~~fll~valAiL~~~r~~Ll~~~~dfdeilk~l~~l~~~----~d~~~lL~~A~~L~~~~~e~~ 610 (638)
++||||.++++..| .+||+|||+|.|.+.+++|+ .+||.+++-||+++|.. -+++-||..|..+...+..+.
T Consensus 404 ~iRlWDTY~aE~dgf~~FhvYvcAAFL~kW~~eL~--e~DFQ~~ilfLQnlPT~~W~d~eIellLseA~~~k~~f~da~ 480 (484)
T KOG1092|consen 404 TIRLWDTYLAEPDGFNEFHVYVCAAFLLKWSSELM--ENDFQELILFLQNLPTHNWSDREIELLLSEAFRLKSVFSDAP 480 (484)
T ss_pred HHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHccch
Confidence 99999999998555 47999999999999999999 45999999999999943 256667777766655554443
No 6
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-40 Score=353.69 Aligned_cols=255 Identities=26% Similarity=0.413 Sum_probs=220.1
Q ss_pred CCHHHHHHhhccC------C-CCCChHHHHHHHHhCCCChhhHHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHH
Q 006618 309 PDPVEWTTFLDNE------G-RVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQ 381 (638)
Q Consensus 309 ~~~~~W~~~l~~~------g-~~~~~~~lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~ 381 (638)
.+..+|..++..+ . -..-.+++|+ ++|+|||+++|+.||..+.|... ....+..|++++..
T Consensus 121 r~~~~~~l~~~~~~~~~~~~~~~~~s~elk~-liRkGiP~~~R~~VW~~~~g~~~-----------~~~~~~~yq~ll~~ 188 (436)
T KOG2058|consen 121 RRQLRWELELQSNIKLHSPNDFPPRSDELKR-LIRKGIPPELRGEVWWVLSGARR-----------QLNYPGYYQELLRK 188 (436)
T ss_pred hHHHHHHHHhhhhhcccccccccCCcHHHHH-HHHcCCChhhhhHHHHHHhcchh-----------hccCchhHHHHHhc
Confidence 3457788877663 1 1245678998 56999999999999999999421 11126778888764
Q ss_pred hhhCChHHHhhhhhhccccccccccccccCCCC-ccccCCCChhhHHHHHHHHhhhhhcCCCCcccchhHHHHHHHHhcC
Q 006618 382 WQSISPEQARRFTKFRERKGLIDKDVVRTDRSV-TFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME 460 (638)
Q Consensus 382 ~~~~~~~~~~~~~~~~e~~~~I~kDV~RT~~~~-~~f~~~~~~~~~~L~~IL~~y~~~npdiGY~QGM~dl~a~Ll~v~~ 460 (638)
--. +-.....+|+.|+.||+|++ +.|..++..+...|+|||.||+.+||++|||||||.+||++|++|+
T Consensus 189 ~~~----------~~~~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~ 258 (436)
T KOG2058|consen 189 GDE----------KKSPVVKQIKLDLPRTFPDNFKGFDSEDSDGRQTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMP 258 (436)
T ss_pred CCC----------ccchHHHHHHhccccccCCCcccCCCCCchHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcC
Confidence 211 11134578999999999999 8999988878999999999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHhcCCC-CCCCcchhhHHHHHHHHHHHhhCHHHHHHHHHCCCCchhhhHHHHHHhcCcCCChhhHHH
Q 006618 461 DESQSFWCFVALMERLGPN-FNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMR 539 (638)
Q Consensus 461 dE~~aFw~f~~lm~~~~~~-f~~~~~gm~~~~~~l~~Ll~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~ref~~~~vlr 539 (638)
+|++|||||+.+++++.+. |..+..|.+....+|+.|++..+|+|+.||+.++++..++++.||+++|+..+|.+.++|
T Consensus 259 ~EE~AFW~Lv~iie~~lp~Yyt~nL~g~qvDQ~VL~~llre~lPkl~~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~Lr 338 (436)
T KOG2058|consen 259 SEEDAFWMLVALIENYLPRYYTPNLIGSQVDQKVLRELLREKLPKLSLHLEGNGVDASLETLPWFLTLFVDILPSETVLR 338 (436)
T ss_pred ChHHHHHHHHHHHHHhchhhcCchhhhhhccHHHHHHHHHHHCHHHHHhhhhcCCCeeeeehhhhHHHhcccccHHHHHH
Confidence 8999999999999998775 567888989888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCC
Q 006618 540 LWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSG 588 (638)
Q Consensus 540 LWD~~~~~~~~~~fll~valAiL~~~r~~Ll~~~~dfdeilk~l~~l~~ 588 (638)
|||+++.+ |.++++++|+|+++.+++.|+++. +..++++++..+..
T Consensus 339 IwD~~f~e--Gskvlfr~Alai~k~~ee~il~~~-~~~~i~~~~~~~~~ 384 (436)
T KOG2058|consen 339 IWDCLFYE--GSKVLFRVALAILKKHEEEILKED-SSKEILRVLPDLTK 384 (436)
T ss_pred HHHHHHhc--ccHHHHHHHHHHHHHhHHHHhcCC-CHHHHHHHHHHHHH
Confidence 99999965 889999999999999999999987 88999999988763
No 7
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=100.00 E-value=2.5e-38 Score=312.32 Aligned_cols=195 Identities=35% Similarity=0.656 Sum_probs=173.0
Q ss_pred HhCCCChhhHHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhhCChHHHhhhhhhccccccccccccccCCCC
Q 006618 335 FYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSV 414 (638)
Q Consensus 335 ~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~e~~~~I~kDV~RT~~~~ 414 (638)
+++|||+++|++||+.++|+.+...+ ..+..|.++++++...+. ...++|++||.||+|++
T Consensus 1 ~~~Gip~~~R~~vW~~ll~~~~~~~~---------~~~~~Y~~l~~~~~~~~~----------~~~~~I~~Dv~Rt~~~~ 61 (199)
T smart00164 1 VRKGVPPSLRGVVWKLLLNAQPMDTS---------ADKDLYSRLLKETAPKDK----------SIVHQIEKDLRRTFPEH 61 (199)
T ss_pred CCCCCCHHHHHHHHHHHhCCchhhhc---------ccchHHHHHHHhhcCCCh----------hhHHHHhcccCCCCCCc
Confidence 37899999999999999999765432 136789888876543221 12468999999999999
Q ss_pred ccccCCCChhhHHHHHHHHhhhhhcCCCCcccchhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-CCCCcchhhHHHHH
Q 006618 415 TFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPN-FNRDQNGMHSQLFA 493 (638)
Q Consensus 415 ~~f~~~~~~~~~~L~~IL~~y~~~npdiGY~QGM~dl~a~Ll~v~~dE~~aFw~f~~lm~~~~~~-f~~~~~gm~~~~~~ 493 (638)
++|+.+.+++++.|+|||.+|+.+||++||||||++||++++.++.+|++|||||+++|+++..+ |..+..++...+..
T Consensus 62 ~~f~~~~~~~~~~L~~IL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 141 (199)
T smart00164 62 SFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMPDEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQ 141 (199)
T ss_pred hhhcCCCcccHHHHHHHHHHHHHHCCCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHH
Confidence 99998777899999999999999999999999999999999999988999999999999998777 45666789999999
Q ss_pred HHHHHHhhCHHHHHHHHH-CCCCchhhhHHHHHHhcCcCCChhhHHHHHHHHHhhc
Q 006618 494 LSKLVELLDNPLHNYFKQ-NDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHY 548 (638)
Q Consensus 494 l~~Ll~~~dP~L~~hL~~-~~i~~~~f~~rWfl~lF~ref~~~~vlrLWD~~~~~~ 548 (638)
++.+++..+|+||+||++ .++++..|+++||+++|+++||++.++||||.++.++
T Consensus 142 ~~~ll~~~~p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG 197 (199)
T smart00164 142 LDRLVKEYDPDLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEG 197 (199)
T ss_pred HHHHHHHHCHHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Confidence 999999999999999996 9999999999999999999999999999999999874
No 8
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=9e-38 Score=321.58 Aligned_cols=279 Identities=22% Similarity=0.404 Sum_probs=235.3
Q ss_pred HHHHHH-hhccCCCCCChHHHHHHHHhCCCChhhHHHHHHHHhCCCCCCCCHHHHHHHHHhhHHH-HHHHHHHhhhCChH
Q 006618 311 PVEWTT-FLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSE-YENIKRQWQSISPE 388 (638)
Q Consensus 311 ~~~W~~-~l~~~g~~~~~~~lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~-Y~~l~~~~~~~~~~ 388 (638)
...|++ ++.+|....+..+++. +||.|||+.+|++||....|. ..+-|.+-........++. ...+.++-.
T Consensus 274 v~vW~~eILpnWe~m~~SrR~re-lWwQGiP~~VRGkvW~laIGN-el~it~elfd~~la~Aker~ak~~aeq~~----- 346 (586)
T KOG2223|consen 274 VNVWENEILPNWEDMLKSRRVRE-LWWQGIPPSVRGKVWSLAIGN-ELNITYELFDIALARAKEREAKSLAEQMS----- 346 (586)
T ss_pred HHHHHHHhccchHHHHhhHHHHH-HHHccCChhhcchhhHhhhCc-ccccCHHHHHHHHHHHHHHHHHHHHhhcc-----
Confidence 357987 7888888888889998 899999999999999999997 4455554433333222221 222222111
Q ss_pred HHhhhhhhccccccccccccccCCCCccccCCCChhhHHHHHHHHhhhhhcCCCCcccchhHHHHHHHHhcCCHHHHHHH
Q 006618 389 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWC 468 (638)
Q Consensus 389 ~~~~~~~~~e~~~~I~kDV~RT~~~~~~f~~~~~~~~~~L~~IL~~y~~~npdiGY~QGM~dl~a~Ll~v~~dE~~aFw~ 468 (638)
+.-+...+...+|..|+.||||++.+|+. ++|..+.|..||.+|+.|.||+||||||++|+|+|++.| |+++||-|
T Consensus 347 --~sa~~re~sv~~i~LDisrTfpsl~iFqk-~GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnm-d~~~AFia 422 (586)
T KOG2223|consen 347 --NSAADREASVELIKLDISRTFPSLSIFQK-GGPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNM-DLADAFIA 422 (586)
T ss_pred --cchhhhhcchhheeechhccCcceeeecc-CCchHHHHHHHhhhheeecCccccccchHHHHHHHHHcC-CcHHHHHH
Confidence 12223445678999999999999999995 588999999999999999999999999999999999999 59999999
Q ss_pred HHHHHHhcC--CCCCCCcchhhHHHHHHHHHHHhhCHHHHHHHHHCCCCchhhhHHHHHHhcCcCCChhhHHHHHHHHHh
Q 006618 469 FVALMERLG--PNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWT 546 (638)
Q Consensus 469 f~~lm~~~~--~~f~~~~~gm~~~~~~l~~Ll~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~ref~~~~vlrLWD~~~~ 546 (638)
|.+++++-. ..|..|.+.|..++.+|...++...|+|+.||++.++.|..|.+.|+.++|+..+|++..+||||+|.-
T Consensus 423 fANLLdkp~q~Aff~~d~s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~r 502 (586)
T KOG2223|consen 423 FANLLDKPCQQAFFRVDHSSMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCR 502 (586)
T ss_pred HHHHhccHHHHHHHhcCcHHHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeee
Confidence 999999844 357889999999999999999999999999999999999999999999999999999999999999985
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 006618 547 HYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCI 604 (638)
Q Consensus 547 ~~~~~~fll~valAiL~~~r~~Ll~~~~dfdeilk~l~~l~~~~d~~~lL~~A~~L~~ 604 (638)
+ |+.|++..+++||+.++++|+ .|||..+.+|+-.+|.++..+++...-..+..
T Consensus 503 d--geeFlfr~~lgIlklyepkLl--~mDf~~~~qfLtklp~dL~~eelF~~i~~~~~ 556 (586)
T KOG2223|consen 503 D--GEEFLFRTALGILKLYEPKLL--VMDFIHVAQFLTKLPEDLTPEELFMHIAYIQM 556 (586)
T ss_pred c--chHHHHHHHHHHHHHccchHh--hhhHHHHHHHHHhCcccCCHHHHHHHHHHHhh
Confidence 4 889999999999999999999 78999999999999999988887655444433
No 9
>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is typically between 184 to 216 amino acids in length. The domain is found associated with PF00566 from PFAM and at the N terminus of GYP7 proteins.
Probab=100.00 E-value=3.3e-36 Score=294.92 Aligned_cols=148 Identities=32% Similarity=0.657 Sum_probs=129.2
Q ss_pred CcEEEEeeCceEEccCCcc----cccccceEEEEeeCCceeEEeEecCCCCCCc--------------------------
Q 006618 42 GAELVYLKDNVTIHPTQFA----SERISGRLKLIKQGSSLFMTWIPYKGQNSNT-------------------------- 91 (638)
Q Consensus 42 ~~~llf~Ks~V~vhpt~~~----~~~I~G~L~l~~~~~~~~l~W~P~~~~~~~~-------------------------- 91 (638)
.++|||+|+||||||+++. ++||||+|+|++++++++|.|+|.++.....
T Consensus 3 ~~kllfeKsgVyIHps~~~~~~~d~~IpGfL~Ivek~~~~~l~w~P~e~~~d~s~~l~s~~d~ss~~~~~~~~~~~~~e~ 82 (213)
T PF12068_consen 3 SVKLLFEKSGVYIHPSASKHSDQDDNIPGFLRIVEKDSEVLLEWSPSEDSSDASQVLYSWKDSSSVVESDETDFDSGYEP 82 (213)
T ss_pred cceEEEEeCCEEEcCCccccCcccccCCeEEEEEEeCCCcccccCCcccccCcchheecccCccccccccccccCCCcCC
Confidence 5899999999999999977 7999999999999999999999988741100
Q ss_pred -c--c----------------cccccCcceeeeeeCCCeeEEEEecCCCCceEEEEEeCCCCcCCceEeecCChHHHHHH
Q 006618 92 -R--L----------------SEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLAT 152 (638)
Q Consensus 92 -~--~----------------~~~d~~~y~~~~v~ls~I~sI~~~~p~~g~~~~il~~~dG~~~P~L~F~~GG~~~fl~~ 152 (638)
+ . +..+....++|+|||+||+||++++|+.|||||+|+++||+.+||||||+||.++||++
T Consensus 83 dw~~vnt~~~~~~~~s~~~~s~~~~~~~~~aFsv~lsdl~Si~~~~p~~G~~~lv~~~kdG~~~p~L~Fh~gg~~~fl~~ 162 (213)
T PF12068_consen 83 DWAVVNTVSKKKRLHSSSPASSPSSSRSSYAFSVPLSDLKSIRVSKPSLGWWYLVFILKDGTSLPPLHFHDGGSKEFLKS 162 (213)
T ss_pred CcccccCCCCccccCCCCCCCCCcCCCcceEEEEEhhheeeEEecCCCCCceEEEEEecCCCccCceEEecCCHHHHHHH
Confidence 0 0 00001123479999999999999999999999999999999999999999999999999
Q ss_pred HHhccccccccCCCceEEEcCCc-hhhhhhhcccCCCc
Q 006618 153 IKQHVLLVRSVEDANVFLVNDFD-NRLQRTLSSLELPR 189 (638)
Q Consensus 153 L~~~~~l~rs~~d~~l~lv~~~~-~~l~~~~~~~~~~~ 189 (638)
|++|+.|.||+.|+++|||++.. +.|+++|+.+.+.+
T Consensus 163 L~~~v~l~~S~~D~~~~lv~~~~s~aL~~S~~~L~lf~ 200 (213)
T PF12068_consen 163 LQRYVTLARSPRDSNLYLVNDHNSEALSQSFSELQLFD 200 (213)
T ss_pred HHhhEEEeecCCCCcEEEEECCCchHHHHHHHHhhccc
Confidence 99999999999999999999977 89999999987764
No 10
>COG5210 GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=5.2e-35 Score=326.74 Aligned_cols=246 Identities=32% Similarity=0.562 Sum_probs=208.9
Q ss_pred CCCHHHHHHhhccCCCC---CChHHHHHHHHhCCCChhhHHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhh
Q 006618 308 APDPVEWTTFLDNEGRV---MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQS 384 (638)
Q Consensus 308 ~~~~~~W~~~l~~~g~~---~~~~~lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~ 384 (638)
+.....|.+.++..+.. ....++++++ +.|||..+|+.||.+++|++++... ....|..+......
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~gip~~~r~~vw~~~~~~~~~~~~----------~~~~y~~~~~~~~~ 248 (496)
T COG5210 180 LAADKLWISYLDPNPLSFLPVQLSKLRELI-RKGIPNELRGDVWEFLLGIGFDLDK----------NPGLYERLLNLHRE 248 (496)
T ss_pred hHHHHHHHHHHhcccchhhhhhHHHHHHHH-HhcCChHhhhhhHHHHhccchhhcc----------CchHHHHHHHHHHh
Confidence 34467888888877662 6677888855 7889999999999999999876543 34455555442211
Q ss_pred CChHHHhhhhhhccccccccccccccCCCCccccCCCChhhHHHHHHHHhhhhhcCCCCcccchhHHHHHHHHhcCCHHH
Q 006618 385 ISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQ 464 (638)
Q Consensus 385 ~~~~~~~~~~~~~e~~~~I~kDV~RT~~~~~~f~~~~~~~~~~L~~IL~~y~~~npdiGY~QGM~dl~a~Ll~v~~dE~~ 464 (638)
.... .....++|++||.||+|.+..|+.+.+.+...|+|||.+|+++||++||||||++|++|||+++..|+.
T Consensus 249 ~~~~-------~~~~~~~i~~Dl~rt~~~~~~f~~~~s~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee~ 321 (496)
T COG5210 249 AKIP-------TQEIISQIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQ 321 (496)
T ss_pred cCCC-------cHHHHHHHHccccccccccccccCcccccHHHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhHH
Confidence 1000 003467999999999999999998776655679999999999999999999999999999999988999
Q ss_pred HHHHHHHHHH--hcCCCCCCCcchhhHHHHHHHHHHHhhCHHHHHHHHHCCCCchhhhHHHHHHhcCcCCChhhHHHHHH
Q 006618 465 SFWCFVALME--RLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWE 542 (638)
Q Consensus 465 aFw~f~~lm~--~~~~~f~~~~~gm~~~~~~l~~Ll~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~ref~~~~vlrLWD 542 (638)
|||||++||+ .+..+|..++.|++.++.++..+++.++|+||+||...++....|+++||+++|.++||++.++||||
T Consensus 322 AF~~l~~L~~~~~l~~~~~~~~~G~~~~~~~l~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD 401 (496)
T COG5210 322 AFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWD 401 (496)
T ss_pred HHHHHHHHHHhccchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999 35667999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCChhHHHHHHHHHHHHHHHHHhcCC
Q 006618 543 VLWTHYLSEHLHLYVCVAILKRYRNKIMGEQ 573 (638)
Q Consensus 543 ~~~~~~~~~~fll~valAiL~~~r~~Ll~~~ 573 (638)
.+|++ |.++++.+++|++...++.++...
T Consensus 402 ~lf~e--g~~~l~~~~~~~l~~~~~~l~~~~ 430 (496)
T COG5210 402 CLFLE--GSSMLFQLALAILKLLRDKLLKLD 430 (496)
T ss_pred HHHHh--ccHHHHHHHHHHHHhhhhhhhccC
Confidence 99987 667888899999999999988654
No 11
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=100.00 E-value=7.2e-34 Score=282.77 Aligned_cols=212 Identities=33% Similarity=0.617 Sum_probs=168.3
Q ss_pred hhhHHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhhCChHHHhhhhhhccccccccccccccCCCCccccCC
Q 006618 341 HKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGD 420 (638)
Q Consensus 341 ~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~e~~~~I~kDV~RT~~~~~~f~~~ 420 (638)
+++|+.||+.|||+.+ .. ...|...+.++...............+...+|++||.||+++...+.
T Consensus 1 ~~~R~~vW~~ll~~~~----~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~rt~~~~~~~~-- 65 (214)
T PF00566_consen 1 HSLRGQVWKILLGIEP----NY---------SNNYQDEKNQWEQIESKSSNSNKLDNKIFEQIDKDVNRTFPNSFLFK-- 65 (214)
T ss_dssp -CCHHHHHHHHCTCSC----HH---------HHHHHHHHHHHHHHHHHHHHCTSTCHTCHHHHHHHHCTSSTSCCCST--
T ss_pred CChHHHHHHHHHccch----hh---------hhhHHHHhhhhhhhhHHHHHhccccchHHHHHHHhhhhhcccchhhh--
Confidence 4689999999999965 11 11121212211111111112222334557899999999999554444
Q ss_pred CChhhHHHHHHHHhhhhhcCCCCcccchhHHHHHHHHhcCCHHHHHHHHHHHH-HhcCCCCCCCcchhhHHHHHHHHHHH
Q 006618 421 DNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALM-ERLGPNFNRDQNGMHSQLFALSKLVE 499 (638)
Q Consensus 421 ~~~~~~~L~~IL~~y~~~npdiGY~QGM~dl~a~Ll~v~~dE~~aFw~f~~lm-~~~~~~f~~~~~gm~~~~~~l~~Ll~ 499 (638)
...+++.|.+||.+|+.++|++||+|||++|++++++++.+|++|||||+++| ......|..+..++...+..++.+++
T Consensus 66 ~~~~~~~l~~iL~~~~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 145 (214)
T PF00566_consen 66 NEQNQKSLERILSAYAKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLLNYYLPDFFQPNFKGLQKILKIFEQLLK 145 (214)
T ss_dssp THHHHHHHHHHHHHHHHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHHTHHGGGGTSTTHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccccccccccchhhhhhhhhhhhcccccchhccccchhcccccccccccccccchhhhhHHHHHH
Confidence 45688999999999999999999999999999999988888999999999999 45666777878899999999999999
Q ss_pred hhCHHHHHHHHHCCCCchhhhHHHHHHhcCcCCChhhHHHHHHHHHhhcCChhH-HHHHHHHHHHHHHHHHh
Q 006618 500 LLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHL-HLYVCVAILKRYRNKIM 570 (638)
Q Consensus 500 ~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~ref~~~~vlrLWD~~~~~~~~~~f-ll~valAiL~~~r~~Ll 570 (638)
.++|+|++||++.++++..|+++|++++|++++|.++++|||| ++.+ |.++ ++++|+|||+..|++||
T Consensus 146 ~~~P~l~~~l~~~~~~~~~~~~~w~~~lF~~~l~~~~~~~lwD-~l~~--g~~~~l~~~~lail~~~~~~il 214 (214)
T PF00566_consen 146 KHDPELYNHLKQLGVDPEIYAFPWFLTLFSRSLPFDDVLRLWD-FLLE--GYKFFLFFIALAILKYLRDQIL 214 (214)
T ss_dssp HHTHHHHHHHHHTT-GGHHHHHHHHHTTTTTTS-HHHHHHHHH-HHHH--CTTHHHHHHHHHHHHHTHHHHH
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhHhhcCCcCCHHHHHHHHH-HHHc--CCCcHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999 5545 4455 89999999999999987
No 12
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=99.96 E-value=3.1e-29 Score=266.75 Aligned_cols=247 Identities=21% Similarity=0.366 Sum_probs=209.8
Q ss_pred hHHHHHHHHhCCCChhhHHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhhCChHHHhhhhhhcccccccccc
Q 006618 327 SNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKD 406 (638)
Q Consensus 327 ~~~lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~e~~~~I~kD 406 (638)
...+-+ -.++|+|+-+|+.+|.-||++... ....|-.+ .+..+. ...+||+.|
T Consensus 345 ~~qI~r-~a~vdvpp~~R~~iW~aLL~l~e~-------------~~a~y~~I-Dk~Ts~------------~tdrqievd 397 (725)
T KOG1093|consen 345 RLQILR-EAYVDVPPLYRGFIWAALLQLEEN-------------HTAFYTLI-DKGTSH------------STDRQIEVD 397 (725)
T ss_pred HHHHHH-HhccCCChhHhHHHHHHHhcCccc-------------cchhhhhh-hcCCCC------------cchhhhhcc
Confidence 333433 347899999999999999997321 12223332 222211 224699999
Q ss_pred ccccCCCCccccCCCChhhHHHHHHHHhhhhhcCCCCcccchhHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCC-CCCC-
Q 006618 407 VVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFV-MEDESQSFWCFVALMERLGPN-FNRD- 483 (638)
Q Consensus 407 V~RT~~~~~~f~~~~~~~~~~L~~IL~~y~~~npdiGY~QGM~dl~a~Ll~v-~~dE~~aFw~f~~lm~~~~~~-f~~~- 483 (638)
++||+......+.+. ++++|+|+|.+|+..+|..-|.||+..+++|+++. +.+|..||-|+..|+-++..+ |..|
T Consensus 398 iprchQyd~~lsSp~--~~r~lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kycq~fflkdn 475 (725)
T KOG1093|consen 398 IPRCHQYDELLSSPK--GHRKLRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYCQHFFLKDN 475 (725)
T ss_pred cchhhhcccccCCHH--HHHHHHHHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999998877777654 78999999999999999999999999999998876 558999999999999998876 5554
Q ss_pred cchhhHHHHHHHHHHHhhCHHHHHHHHHCCCCchhhhHHHHHHhcCcCCChhhHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 006618 484 QNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILK 563 (638)
Q Consensus 484 ~~gm~~~~~~l~~Ll~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~ref~~~~vlrLWD~~~~~~~~~~fll~valAiL~ 563 (638)
..-++..+..|.+++.++||+|++||..+|+.+..|+.+||+|+|+++||.+.++.|||.++.+ ...|.+++++||+.
T Consensus 476 s~vikeyLs~f~~l~AfhDpeL~qHl~~~~f~~eLyAiPwflT~Fshvlpl~kil~LwD~lml~--~~SFplmi~vAil~ 553 (725)
T KOG1093|consen 476 SNVIKEYLSMFSQLLAFHDPELLQHLIDIGFIPELYAIPWFLTMFSHVLPLHKILHLWDNLMLG--HSSFPLMIGVAILI 553 (725)
T ss_pred chhHHHHHHHHHHHHHhcCHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC--CCccHHHHHHHHHH
Confidence 4457889999999999999999999999999999999999999999999999999999999987 45699999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhc
Q 006618 564 RYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAG 607 (638)
Q Consensus 564 ~~r~~Ll~~~~dfdeilk~l~~l~~~~d~~~lL~~A~~L~~~~~ 607 (638)
..|+.|+.+ +|.|.+.+|.++| ++|++.++.....++...+
T Consensus 554 ~lR~~LLa~--nfne~illf~d~p-dldId~~Ires~~l~e~tP 594 (725)
T KOG1093|consen 554 QLRDPLLAC--NFNECILLFSDLP-DLDIDVCIRESYHLMETTP 594 (725)
T ss_pred HhhhhhhhC--CchhheeeeccCC-cccHHHHHHHHhhhhhCCC
Confidence 999999977 8999999999999 9999999999999998543
No 13
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=99.96 E-value=3.6e-29 Score=259.83 Aligned_cols=262 Identities=21% Similarity=0.398 Sum_probs=219.1
Q ss_pred HHHHhhccCCCCCChHHHHHHHHhCCCChhhHHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhhCChHHHhh
Q 006618 313 EWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARR 392 (638)
Q Consensus 313 ~W~~~l~~~g~~~~~~~lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~~ 392 (638)
-|+.+. |.....++++..+-.||||+.+|..+|+-|.|.. ..++.....|+.+.++.....
T Consensus 148 ~w~hi~---~~~~ktdk~~~llkeggiphslr~~lw~rlsga~----------~kkk~ae~sy~~ilk~~andk------ 208 (848)
T KOG2222|consen 148 LWEHID---GMELKTDKFEELLKEGGIPHSLRAFLWMRLSGAL----------AKKKDAETSYEDILKACANDK------ 208 (848)
T ss_pred hHHhhc---ccccchHHHHHHHHcCCCCcchhHHHHHHhhhhh----------hhhccccccHHHHHHHhcccc------
Confidence 566553 5567788899878779999999999999999973 222334456777776532211
Q ss_pred hhhhccccccccccccccCCCCccccCCCChhhHHHHHHHHhhhhhcCCCCcccchhHHHHHHHHhcCCHHHHHHHHHHH
Q 006618 393 FTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVAL 472 (638)
Q Consensus 393 ~~~~~e~~~~I~kDV~RT~~~~~~f~~~~~~~~~~L~~IL~~y~~~npdiGY~QGM~dl~a~Ll~v~~dE~~aFw~f~~l 472 (638)
-..-.||+||+-|+.|++..|..+++.+...|+|||.+.++..||+||||||.-|+|-||+++. |+.|||++..+
T Consensus 209 ----~~~~~qiekdllr~lpnn~cf~k~n~~gi~~lrrilk~ia~ifpdigycqg~gviva~lllf~~-ee~afwmmaai 283 (848)
T KOG2222|consen 209 ----LMIGKQIEKDLLRILPNNACFSKKNGEGIEALRRILKCIAFIFPDIGYCQGMGVIVACLLLFCE-EENAFWMMAAI 283 (848)
T ss_pred ----cchhHHHHHHHHHhCCCcceeeCCCCcchHHHHHHHhhheeecCCcccccCccHHHHHHHHHhc-chhHHHHHHHH
Confidence 1124689999999999999999999999999999999999999999999999999999999996 88999999999
Q ss_pred HHhcCC-CCC-CCcchhhHHHHHHHHHHHhhCHHHHHHHHHCCCCchhhhHHHHHHhcCcCCChhhHHHHHHHHHhhcCC
Q 006618 473 MERLGP-NFN-RDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLS 550 (638)
Q Consensus 473 m~~~~~-~f~-~~~~gm~~~~~~l~~Ll~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~ref~~~~vlrLWD~~~~~~~~ 550 (638)
++.+.+ ||+ .+.-|++..-..+..|++-+.|.|-+-|+++++..+.....||+|+|...|.....+||||.||. .|
T Consensus 284 iedilp~nfysqtllgiqaderv~~~li~~~l~~ldeal~~~dielslitl~w~ltlf~nv~~~killriwd~~fy--~g 361 (848)
T KOG2222|consen 284 IEDILPANFYSQTLLGIQADERVMHHLIACHLPDLDEALEDHDIELSLITLHWFLTLFANVFHMKILLRIWDFFFY--EG 361 (848)
T ss_pred HHHhcCchhhhhhHhccchhHHHHHHHHHhccCchhHHHHhccceeeehHHHHHHHHHHHHHHHHHHHHHHHhhee--cC
Confidence 998664 655 56678888888999999999999999999999999999999999999999999999999999994 46
Q ss_pred hhHHHHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHhCCCC-CCHHHHHHHHH
Q 006618 551 EHLHLYVCVAILKRYRNKIMGE---QMDFDTLLKFINELSGR-IDLDAILRDAE 600 (638)
Q Consensus 551 ~~fll~valAiL~~~r~~Ll~~---~~dfdeilk~l~~l~~~-~d~~~lL~~A~ 600 (638)
.--++.+.++||+..++.|... ..+..+|..-+.++|.. -|++.++..|-
T Consensus 362 ~i~ifql~i~ilkmkeqdi~~iaettensa~if~als~ip~~vtdve~l~~~~~ 415 (848)
T KOG2222|consen 362 GINIFQLIIGILKMKEQDIKEIAETTENSADIFNALSDIPAEVTDVEKLFEQAG 415 (848)
T ss_pred cchhHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHhCCchhhhHHHHHHHHh
Confidence 5567789999999999888753 23677898999999855 47777776664
No 14
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.4e-27 Score=251.52 Aligned_cols=261 Identities=25% Similarity=0.354 Sum_probs=206.2
Q ss_pred hhHHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhhCC---------------------hHHHhhhhhhcccc
Q 006618 342 KLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSIS---------------------PEQARRFTKFRERK 400 (638)
Q Consensus 342 ~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~---------------------~~~~~~~~~~~e~~ 400 (638)
..|+.+|+.+||+.|.+.+.+ ..-.+..+..|.+++......+ ...+++|....|..
T Consensus 28 ~~Rgv~Wrl~L~vLp~~~ss~--id~~~~~ra~~r~~r~~~L~dPh~~k~~~s~d~~idnPLSq~~~S~W~rfF~d~EL~ 105 (625)
T KOG1091|consen 28 NLRGVRWRLLLGVLPSENSSW--IDNLRRLRANYRRLRRRLLIDPHNLKENHSPDLPIDNPLSQNPQSVWNRFFRDAELE 105 (625)
T ss_pred hhhhHHHHHhheecCCCchhH--HHHHHHHhhhhhccccccccCccccccccCCCcccCCccccCCCchhhhhcCcHHHH
Confidence 689999999999999875433 3333455667777655443221 12245555566788
Q ss_pred ccccccccccCCCC-ccccCCCChhhHHHHHHHHhhhhhcCCCCcccchhHHHHHHHHhcCC------------------
Q 006618 401 GLIDKDVVRTDRSV-TFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMED------------------ 461 (638)
Q Consensus 401 ~~I~kDV~RT~~~~-~~f~~~~~~~~~~L~~IL~~y~~~npdiGY~QGM~dl~a~Ll~v~~d------------------ 461 (638)
..|++||.||||.+ .||+.+. .+..|++||..|+.-||.+||-|||++++||+++|..-
T Consensus 106 ~~i~qDvsRtfPe~~~fFqs~~--~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fVl~~D~q~l~h~se~~~~~l~f 183 (625)
T KOG1091|consen 106 KTIDQDVSRTFPEHSLFFQSPE--VQGMLRRILLLYALEHPEIGYRQGMHELLAPLLFVLHVDNQALLHVSESLFDKLGF 183 (625)
T ss_pred HhhcchhhccCcchhhhhcCch--hhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhheehhHHHHHHHHHhhhhhcCc
Confidence 99999999999999 8888665 56999999999999999999999999999999998742
Q ss_pred ------------HHHHH--HHHHHHHHhcCCCC------------------------CCCcchhhHHHHHHHHHHHhhCH
Q 006618 462 ------------ESQSF--WCFVALMERLGPNF------------------------NRDQNGMHSQLFALSKLVELLDN 503 (638)
Q Consensus 462 ------------E~~aF--w~f~~lm~~~~~~f------------------------~~~~~gm~~~~~~l~~Ll~~~dP 503 (638)
+.+++ -.|+.+|.--..+| ....+-+-.....+..++...|+
T Consensus 184 ~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~l~~v~e~~~~~~~lL~~~D~ 263 (625)
T KOG1091|consen 184 EERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPGLPPVFEANFAQYHLLAKVDK 263 (625)
T ss_pred chhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcccchhHHHHhhhhhhhhhhccH
Confidence 22333 35555554311111 11112233444568899999999
Q ss_pred HHHHHHHHCCCCchhhhHHHHHHhcCcCCChhhHHHHHH-HHHhhcCChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 006618 504 PLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWE-VLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKF 582 (638)
Q Consensus 504 ~L~~hL~~~~i~~~~f~~rWfl~lF~ref~~~~vlrLWD-~~~~~~~~~~fll~valAiL~~~r~~Ll~~~~dfdeilk~ 582 (638)
.||.||...|+.+.+|..||+..+|.||||+.+++.+|| +++.+++...++-++++|||..+|+.|+.. +....+++
T Consensus 264 ~Lh~HL~~l~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~pr~~Lv~~m~VsmLL~IRd~Llss--~~~tcL~~ 341 (625)
T KOG1091|consen 264 SLHSHLVELGIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDSPRGILVACMFVSMLLYIRDSLLSS--EYQTCLQY 341 (625)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHh--cchhHHHH
Confidence 999999999999999999999999999999999999999 888888888899999999999999999965 66669999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHHhcc
Q 006618 583 INELSGRIDLDAILRDAEALCICAGE 608 (638)
Q Consensus 583 l~~l~~~~d~~~lL~~A~~L~~~~~e 608 (638)
+.++|..+|++.++++|..+...+..
T Consensus 342 Lm~yP~~~Dv~~~iekAl~l~~~~~K 367 (625)
T KOG1091|consen 342 LMNYPEIIDVDKFIEKALHLQKLFPK 367 (625)
T ss_pred HhcCCCcCcHHHHHHHHHHHHHhccc
Confidence 99999999999999999888764444
No 15
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.93 E-value=7.8e-26 Score=248.24 Aligned_cols=256 Identities=20% Similarity=0.409 Sum_probs=215.7
Q ss_pred HHHHHhhccCCCC---CChHHHHHHHHhCCCChhhHHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhhCChH
Q 006618 312 VEWTTFLDNEGRV---MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 388 (638)
Q Consensus 312 ~~W~~~l~~~g~~---~~~~~lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~ 388 (638)
..|++++.. ++. .+.+.+-.. .+.|+|.+-|+++|.+|.--+..+..... .++-..--|+.+..
T Consensus 550 ~~wek~~e~-~~~~~k~d~ed~~~~-l~~gvprsrrgeiwtflA~q~~~~~~l~~---~kr~~~~p~~~llk-------- 616 (948)
T KOG4436|consen 550 ETWEKILER-TRIKIKKDMEDLHSA-LRTGVPRSRRGEIWTFLAEQHSLNHALPD---KKRPPDFPYKELLK-------- 616 (948)
T ss_pred HHHHHHHHH-hhhcccccHHHHHHH-HHccCchhhhHHHHHHHHHHHHHhccCCc---ccCCCCCChHHHHH--------
Confidence 589999876 444 467777774 48999999999999998743211110000 00001111333332
Q ss_pred HHhhhhhhccccccccccccccCCCCccccCCCChhhHHHHHHHHhhhhhcCCCCcccchhHHHHHHHHhcCCHHHHHHH
Q 006618 389 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWC 468 (638)
Q Consensus 389 ~~~~~~~~~e~~~~I~kDV~RT~~~~~~f~~~~~~~~~~L~~IL~~y~~~npdiGY~QGM~dl~a~Ll~v~~dE~~aFw~ 468 (638)
.+.++.+.|-.|.-||||+|++|...-+.++..|.++|.+|+..+|++|||||...++++||+.|. |+.||-+
T Consensus 617 ------qLte~qhAi~idlgrtfp~h~~~~~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~~-e~~afel 689 (948)
T KOG4436|consen 617 ------QLTEQQHAILIDLGRTFPTHPYFSDQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHMS-EENAFEL 689 (948)
T ss_pred ------HHHHHHHHHHHhhccccCCCHHHHhhccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhcc-hhhHHHH
Confidence 345667899999999999999999999999999999999999999999999999999999999995 9999999
Q ss_pred HHHHHHh--cCCCCCCCcchhhHHHHHHHHHHHhhCHHHHHHHHHCCCCchhhhHHHHHHhcCcCCChhhHHHHHHHHHh
Q 006618 469 FVALMER--LGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWT 546 (638)
Q Consensus 469 f~~lm~~--~~~~f~~~~~gm~~~~~~l~~Ll~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~ref~~~~vlrLWD~~~~ 546 (638)
+..||-. ++..|..|+..++.++..+..+++-+.+.||+||++++|.|..|+.+||++.|+--||.-.|.|++|.++.
T Consensus 690 lk~LM~~r~~r~qy~pdm~~lq~qmyqLsrl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf~lGfvarvfd~~fl 769 (948)
T KOG4436|consen 690 LKFLMFDRGMRKQYRPDMKKLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQFPLGFVARVFDLIFL 769 (948)
T ss_pred HHHHHHHHhhHhhhchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhCcchHHHHHHHHHHh
Confidence 9999976 55679999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCC
Q 006618 547 HYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRI 590 (638)
Q Consensus 547 ~~~~~~fll~valAiL~~~r~~Ll~~~~dfdeilk~l~~l~~~~ 590 (638)
. |..+.+-+|+++|..++..|+++. +|++|+.|+++....+
T Consensus 770 q--~tevifK~a~~llsv~k~~l~e~d-n~e~i~d~~k~~~p~~ 810 (948)
T KOG4436|consen 770 Q--GTEVIFKVALSLLSVHKQLLLEKD-NFEEIVDFLKTTLPKM 810 (948)
T ss_pred h--ccchhhhhHHHHHHhhHHHHHhhh-hHHHHHHHHHHhhhhh
Confidence 6 678999999999999999999987 9999999999865444
No 16
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=99.93 E-value=1.5e-25 Score=242.95 Aligned_cols=247 Identities=21% Similarity=0.357 Sum_probs=208.7
Q ss_pred HHHHHHhhccCCCCCCh---HHHHHHHHhCCCChhhHHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhhCCh
Q 006618 311 PVEWTTFLDNEGRVMDS---NALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISP 387 (638)
Q Consensus 311 ~~~W~~~l~~~g~~~~~---~~lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~ 387 (638)
...|.+++..+|+.++. .++++ +.+.|+|...|+++|..+.|. ..-...+..+|.++......
T Consensus 173 ~k~W~~~f~~~G~~~~~~qt~~~~K-lv~~gipe~~rgeiW~l~sGa----------v~~~l~~~Geygkll~~~~G--- 238 (671)
T KOG4347|consen 173 EKFWKKYFIKDGPNMNQIQTILLRK-LLYNGFPEDPRGEIWYLASGA----------VASLLLNPGEYGKLLHSVTG--- 238 (671)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHH-HHHHhcCCChHHHHHHhhhHH----------HHHhhcCcHHhhhhhhcccC---
Confidence 45799999998987654 57777 558999999999999999997 44556678899888775332
Q ss_pred HHHhhhhhhccccccccccccccCCCCccccCCCChhhHHHHHHHHhhhhhcCCCCcccchhHHHHHHHHhcCCHHHHHH
Q 006618 388 EQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFW 467 (638)
Q Consensus 388 ~~~~~~~~~~e~~~~I~kDV~RT~~~~~~f~~~~~~~~~~L~~IL~~y~~~npdiGY~QGM~dl~a~Ll~v~~dE~~aFw 467 (638)
+.+.....|++|..|..|.|+-|+.+. +...|+|||.+|++.||++||||-||-+++.+++++. |+.|||
T Consensus 239 -------~~~~a~eEIE~Dl~rsLpEhpA~Q~e~--gi~aLR~vL~Aya~~Np~vGYcQaMNIV~s~lll~~~-EEeafw 308 (671)
T KOG4347|consen 239 -------KRSVATEEIEPDLGRSLPEHPAFQSEP--GIAALRRVLTAYAWSNPEVGYCQAMNIVGSELLLFCK-EEEAFW 308 (671)
T ss_pred -------CcccccccccCCCCCCCCcchhhhCCC--chhhHHHHHHhhhccCCchhHHHHHHHHHHhhhhhhc-cchHHH
Confidence 233445689999999999999999766 5699999999999999999999999999999999985 889999
Q ss_pred HHHHHHHhcCCCCC-CCcchhhHHHHHHHHHHHhhCHHHHHHHHHCCCCchhhhHHHHHHhcCcCCChhhHHHHHHHHHh
Q 006618 468 CFVALMERLGPNFN-RDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWT 546 (638)
Q Consensus 468 ~f~~lm~~~~~~f~-~~~~gm~~~~~~l~~Ll~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~ref~~~~vlrLWD~~~~ 546 (638)
+++.+.+++.+.|+ .+.-|-.....+++.|++...|.|+.|+...| ........||+++|...+|++..+||-|+|+.
T Consensus 309 ll~~lce~~ip~yys~~vvGtliDQ~vfe~lve~~lP~l~~~~~~l~-~l~~Vsl~WFlslFls~m~le~a~~ilD~FF~ 387 (671)
T KOG4347|consen 309 LLSKLCEIYIPDYYSKTVVGTLIDQSVFEELVEDTLPVLGEHLAVLG-QLSTVSLSWFLSLFLSLMPLEYAVRILDCFFY 387 (671)
T ss_pred HHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhc-ccceEeeHHHHHHHHHHcchHHHHHHHhhhhh
Confidence 99999999888765 44445444455699999999999999999999 66778999999999999999999999999995
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHh
Q 006618 547 HYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINE 585 (638)
Q Consensus 547 ~~~~~~fll~valAiL~~~r~~Ll~~~~dfdeilk~l~~ 585 (638)
+ |...++-+||||++.+.+.|+++. |=.+++..+.+
T Consensus 388 e--G~rvlFqiaLail~~N~~~il~~~-dDge~~~vl~~ 423 (671)
T KOG4347|consen 388 E--GPRVLFQIALAILKQNAERILSAT-DDGEAMMVLGN 423 (671)
T ss_pred c--ccHHHHHHHHHHHHhhHHHhcccC-CchHHHHHHHH
Confidence 5 788999999999999999999887 43444444433
No 17
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.88 E-value=1.2e-22 Score=219.78 Aligned_cols=249 Identities=24% Similarity=0.407 Sum_probs=200.6
Q ss_pred HHHHHHhhccCCCC--CChHHHHHHHHhCCCChhhHHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhhCChH
Q 006618 311 PVEWTTFLDNEGRV--MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 388 (638)
Q Consensus 311 ~~~W~~~l~~~g~~--~~~~~lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~ 388 (638)
.++|..+...+-.+ ....++.+ ....|||.++|..+|..+++.-- +.........|.... ....+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~~-~~~~gip~~~r~~~W~l~~~~~~--------~~~~~~~~~l~~~~~---~~~~~- 183 (397)
T KOG1102|consen 117 EQELTALSSSWLKVILRRPLKLSR-RVLVGIPDELRGLVWQLLLYAVE--------ESLFDSLDELYRLQL---DEPEP- 183 (397)
T ss_pred HHHHHHHHHHhhhhccccHHHHHH-HhhccccHHHHHHHHHHhcccHh--------hhhhhhHHHHHHHhh---ccCCC-
Confidence 34555555444443 34556666 34789999999999999998510 000011111111111 11111
Q ss_pred HHhhhhhhccccccccccccccCCCCccccCCCChhhHHHHHHHHhhhhhcCCCCcccchhHHHHHHHHhcCCHHHHHHH
Q 006618 389 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWC 468 (638)
Q Consensus 389 ~~~~~~~~~e~~~~I~kDV~RT~~~~~~f~~~~~~~~~~L~~IL~~y~~~npdiGY~QGM~dl~a~Ll~v~~dE~~aFw~ 468 (638)
....+| +|+.||+|.+..|....+.+++.|.+||.+|+.|+|++||||||..++++++.++. |++|||.
T Consensus 184 ---------~~~~~~-~d~~Rt~~~~~~f~~~~~~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~~-ee~af~~ 252 (397)
T KOG1102|consen 184 ---------HESEII-RDLSRTFPAHLLFRKRYGVGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYLP-EEEAFPL 252 (397)
T ss_pred ---------chhHHH-hhccCcCcchhhhhhhcCcccccccccchhhcccCCCcccccchhhHhhhhhccCc-hhhhhhh
Confidence 112356 99999999999999888889999999999999999999999999999999999997 9999999
Q ss_pred HHHHHHhcC-CCCCCCcchhhHHHHHHHHHHHhhCHHHHHHHHHCCCCchhhhHHHHHHhcCcCCChhhHHHHHHHHHhh
Q 006618 469 FVALMERLG-PNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTH 547 (638)
Q Consensus 469 f~~lm~~~~-~~f~~~~~gm~~~~~~l~~Ll~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~ref~~~~vlrLWD~~~~~ 547 (638)
++.+|.... ..|.....++...+..+..+++...|.++.|+...++...+|...|++|+|...+|++.+.|+||+++.+
T Consensus 253 lv~l~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p~~~~~ri~d~~~~~ 332 (397)
T KOG1102|consen 253 LVKLMKNYGLDLLSPGFSGLQRSFRQLQRLLKELIPKLLDHLLPQGIELSMYASQWFLTLFAAKFPLELVLRIWDALFVE 332 (397)
T ss_pred hhhhhhccchhcccccCCchhhhHHHHHHHHHHhChhhhhhccccccccceeccceeeEeeeccccHHHHHHHhHHHHHh
Confidence 999998753 3456777889999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCC
Q 006618 548 YLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELS 587 (638)
Q Consensus 548 ~~~~~fll~valAiL~~~r~~Ll~~~~dfdeilk~l~~l~ 587 (638)
+..+++.+++|+++...+.+++ .+++.+++++.+..
T Consensus 333 --g~~i~~~~~~~l~~~~~~~~~~--~~~e~~~~~l~~~~ 368 (397)
T KOG1102|consen 333 --GVSILFRFSLALLKHKADDLLD--LDFESLLSYLRVDL 368 (397)
T ss_pred --chHHHHHHHHHHhhhhhHHHhh--ccHHHHHHHHhccc
Confidence 4778899999999999999995 48999999998743
No 18
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=99.87 E-value=1.1e-21 Score=198.47 Aligned_cols=257 Identities=18% Similarity=0.231 Sum_probs=197.7
Q ss_pred CChHHHHHHHHh-CCC-ChhhHHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhhCChHHHhhhhhhcccccc
Q 006618 325 MDSNALRKRIFY-GGV-DHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGL 402 (638)
Q Consensus 325 ~~~~~lk~~i~~-~GI-p~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~e~~~~ 402 (638)
.+.+.|++.-.. +|+ ..++|+.||+.|+|..=.+-.. ..|.+..+ -.+...|
T Consensus 46 ~dv~~Lr~i~l~p~Glv~dslRk~vWp~L~~~~~n~~~~-----------~~~~~~~q---------------~hkd~nQ 99 (395)
T KOG2595|consen 46 KDVDALRYIGLSPGGLVNDSLRKDVWPELLALNINHLDA-----------TSTLTPVQ---------------KHKDYNQ 99 (395)
T ss_pred ccHHHHHHhccCCCccccHHHHHHHHHHHhccccCCCcc-----------cccCChhh---------------hCcccce
Confidence 677888874333 344 7799999999999973222111 11111111 1122468
Q ss_pred ccccccccCCCCccccC--CCChhhHHHHHHHHhhhhhcCCCCcccchhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Q 006618 403 IDKDVVRTDRSVTFFDG--DDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNF 480 (638)
Q Consensus 403 I~kDV~RT~~~~~~f~~--~~~~~~~~L~~IL~~y~~~npdiGY~QGM~dl~a~Ll~v~~dE~~aFw~f~~lm~~~~~~f 480 (638)
+..||.|++...+-=.. .....++.|..++.-....+|.+-|.||.+||+..+++++. |.+|+-....+-....++|
T Consensus 100 V~LDv~RSl~rfppg~p~~~R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~g-E~~Al~l~E~L~~~~lrdf 178 (395)
T KOG2595|consen 100 VILDVERSLGRFPPGIPKELRLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVVG-ELEALSLMEELSTLHLRDF 178 (395)
T ss_pred EEEehhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhhh-hHhhhHHHHHHHHHHHHHH
Confidence 99999999865442000 01124566777777777889999999999999999999997 8899988777775444444
Q ss_pred C-CCcchhhHHHHHHHHHHHhhCHHHHHHHHHCCCCchhhhHHHHHHhcCcCCC-hhhHHHHHHHHHhhcCChhHHHHHH
Q 006618 481 N-RDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFE-YEKTMRLWEVLWTHYLSEHLHLYVC 558 (638)
Q Consensus 481 ~-~~~~gm~~~~~~l~~Ll~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~ref~-~~~vlrLWD~~~~~~~~~~fll~va 558 (638)
. ++..+-..++..+..+|+..+|+||+.|++.++.+. |+..|++|||++.+. +..|+|++|+|++..+ -..+|++
T Consensus 179 M~~Tld~t~~qL~~i~~iIk~~nP~Ly~~l~~aevgtl-FaLsWllTWFaH~L~~~~~vvRlfD~Flas~p--l~piyv~ 255 (395)
T KOG2595|consen 179 MLPTLDFTVRQLRLISPIIKEVNPELYQFLQSAEVGTL-FALSWLLTWFAHNLKDIRIVVRLFDFFLASHP--LLPIYVY 255 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcChHHHHHHHhhcccce-ehhhHHHHHHhhcchhHHHHHHHHHHHHhcCc--chhHHHH
Confidence 3 556667788888999999999999999999998874 999999999999997 8999999999998643 3789999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhccCCC
Q 006618 559 VAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGA 611 (638)
Q Consensus 559 lAiL~~~r~~Ll~~~~dfdeilk~l~~l~~~~d~~~lL~~A~~L~~~~~e~~~ 611 (638)
.|++...++.|+++..|..-+-.++..+|.++..+++|+.+..++.+......
T Consensus 256 A~vvL~r~~eIl~~~~dms~~H~lLs~iPq~lp~d~lik~s~~~i~~~~~t~~ 308 (395)
T KOG2595|consen 256 AAVVLYRRSEILKCDCDMSLLHGLLSTIPQDLPYDTLIKESVLLITRKPATLL 308 (395)
T ss_pred HHHhhhhHHHHHHHHhhhHHHHHHHHhCccccCHHHHHHHHHHHHhcCChhhh
Confidence 99999999999998878888888999999999999999999888877654443
No 19
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=8.4e-21 Score=181.47 Aligned_cols=192 Identities=20% Similarity=0.372 Sum_probs=158.7
Q ss_pred CCHHHHHHhhccCCCC--CChHHHHHHHHhCCCChhhHHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhhCC
Q 006618 309 PDPVEWTTFLDNEGRV--MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSIS 386 (638)
Q Consensus 309 ~~~~~W~~~l~~~g~~--~~~~~lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~ 386 (638)
-+..+|-.|+++|... .+.++|+-+ |+.|||+.+|+..|.+|.|.+.. ..+++..|..+..+
T Consensus 73 ~ReskwL~mldnw~~~m~kk~~~ir~r-crkgippslr~Raw~ylsGa~~~----------~~~np~~~~~~~~~----- 136 (267)
T KOG2221|consen 73 YRESKWLHMLDNWHEEMRKKQKKIRPR-CRKGIPPSLRGRAWRYLSGAPSP----------PPKNPVVFDELGPA----- 136 (267)
T ss_pred hhHHHHHHHHHHHHHHHHhccccccch-hhcCCCcccchhHHHhhcCCCCC----------CCCCcchhhhccCC-----
Confidence 3567999999998655 345577775 58999999999999999997432 12234455444321
Q ss_pred hHHHhhhhhhccccccccccccccCCCCccccCCCChhhHHHHHHHHhhhhhcCCCCcccchhHHHHHHHHhcCCHHHHH
Q 006618 387 PEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSF 466 (638)
Q Consensus 387 ~~~~~~~~~~~e~~~~I~kDV~RT~~~~~~f~~~~~~~~~~L~~IL~~y~~~npdiGY~QGM~dl~a~Ll~v~~dE~~aF 466 (638)
+.. .+ ...-|.+|++|-||+|.+|......+...|.|+|.+|..|+|+.||||+-.-|++.++..|. +.+||
T Consensus 137 pG~----p~---t~e~i~kdl~rqfp~hemf~s~~k~gkqelfr~lka~ti~~pe~g~cq~qapiaa~llmhmp-~rdaf 208 (267)
T KOG2221|consen 137 PGD----PK---TAEGIHKDLHRQFPFHEMFGSSGKTGKQELFRVLKAYTIYKPEEGYCQAQAPIAAVLLMHMP-ARDAF 208 (267)
T ss_pred CCC----Cc---chhhhccccccCCCcccccccccccchHHHHHHHHHHHHhCchhhhhhhhchHHHHHHhccc-HHHHH
Confidence 100 01 13469999999999999999988888999999999999999999999999999999999997 78999
Q ss_pred HHHHHHHHhcCCC-CCCCcchhhHHHHHHHHHHHhhCHHHHHHHHHCCCCchhhhHHHH
Q 006618 467 WCFVALMERLGPN-FNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWV 524 (638)
Q Consensus 467 w~f~~lm~~~~~~-f~~~~~gm~~~~~~l~~Ll~~~dP~L~~hL~~~~i~~~~f~~rWf 524 (638)
|||+.+.+++.+. |..+...++..-..|..|+++.+|..|.||....+++..|...||
T Consensus 209 ~~~vqicekylqgy~~sgleaiq~dg~il~~Llkk~~~p~~rH~~~~kvdp~lym~ewF 267 (267)
T KOG2221|consen 209 WCFVQICEKYLQGYYSSGLEAIQNDGGILEGLLKKASPPPYRHLGGDKVDPLLYMTEWF 267 (267)
T ss_pred HHHHHHHHHHcccccccchhhhhcccHHHHHHHHhcCCCCCcccccCCCCHHHhhhccC
Confidence 9999999998776 456667777777899999999999999999999999999999997
No 20
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=99.52 E-value=1.6e-13 Score=143.30 Aligned_cols=180 Identities=19% Similarity=0.324 Sum_probs=142.4
Q ss_pred ChhhHHHHHHHHhhhhhcCCCCccc--chhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCCCcchhhHHHHHHHHHHH
Q 006618 422 NPNVHLLRDILLTYSFYNFDLGYCQ--GMSDLLSPILFVMEDESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVE 499 (638)
Q Consensus 422 ~~~~~~L~~IL~~y~~~npdiGY~Q--GM~dl~a~Ll~v~~dE~~aFw~f~~lm~~~~~~f~~~~~gm~~~~~~l~~Ll~ 499 (638)
.+.+..|..++.-||. +.++.|.. |...|+-||+..-.+-.+.|-||-.+++++.+. +...-..-+..|+-||+
T Consensus 89 v~vv~dlES~iTfYCK-~Rn~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPk---dcrpkg~~Fh~FRLLlq 164 (669)
T KOG3636|consen 89 VPVVSDLESFITFYCK-KRNMDYIKDIGWITLLEPLLLLNLPRSDEFNVFFAITTKYIPK---DCRPKGQIFHLFRLLLQ 164 (669)
T ss_pred cchhHhhhhHhhhhhh-ccCCcccccccHHHHHHHHHHhcCCcchhhhhhHhhhhcccCC---CCCCCCccchHHHHHHH
Confidence 4455678888877775 33556654 455688888888777889999999999997653 21112233567899999
Q ss_pred hhCHHHHHHHHHCCCCchhhhHHHHHHhcCcCCChhhHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCCC-HHH
Q 006618 500 LLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMD-FDT 578 (638)
Q Consensus 500 ~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~ref~~~~vlrLWD~~~~~~~~~~fll~valAiL~~~r~~Ll~~~~d-fde 578 (638)
.+||+|+.||+...++|.+|...||-++|+...+.+.+..+||.++-... .-+++|+++.||..-|++|++...| -+|
T Consensus 165 YHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaD-PF~vffLaliiLiNake~ILq~~sdsKEe 243 (669)
T KOG3636|consen 165 YHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQAD-PFLVFFLALIILINAKEEILQVKSDSKEE 243 (669)
T ss_pred hcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-ceehHHHHHHHhcccHHHHhhhccccHHH
Confidence 99999999999999999999999999999999999999999999997532 2366778999999999999976543 689
Q ss_pred HHHHHHhCCCCC---CHHHHHHHHHHHHHHh
Q 006618 579 LLKFINELSGRI---DLDAILRDAEALCICA 606 (638)
Q Consensus 579 ilk~l~~l~~~~---d~~~lL~~A~~L~~~~ 606 (638)
++||+.++|..+ |+.++...|.....+.
T Consensus 244 ~ikfLenmp~~L~~eDvpDffsLAqyY~~KT 274 (669)
T KOG3636|consen 244 AIKFLENMPAQLSVEDVPDFFSLAQYYSDKT 274 (669)
T ss_pred HHHHHHcCchhcccccchhHHHHHHHHhhcC
Confidence 999999998665 6677778887665443
No 21
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.47 E-value=2.4e-13 Score=150.84 Aligned_cols=239 Identities=18% Similarity=0.264 Sum_probs=193.8
Q ss_pred CCChHHHHHHHHhCCCChhhHHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhhCChHHHhhhhhhccccccc
Q 006618 324 VMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLI 403 (638)
Q Consensus 324 ~~~~~~lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~e~~~~I 403 (638)
.....+|+.+| .+|+|+..|-.+|..|+..- |. ++. .-.+.|.+++.. ...+++. .+...|
T Consensus 171 ~~s~~~l~e~V-e~~~p~~frli~~qlLssat--d~-----~q~--~I~e~~sdl~~~----s~~~Ek~-----~~~~~I 231 (948)
T KOG4436|consen 171 KKSLHKLKELV-EGGIPMHFRLIRWQLLSSAT--DR-----EQA--LIFEDYSDLAPC----SSQQEKE-----LHIGII 231 (948)
T ss_pred hhchhhhHHHH-hcCCchHHHHHHHHHhcccc--cc-----hhh--HHHHHHHHHhhh----cchhhhh-----HHHHHH
Confidence 35677888854 99999999999999999762 11 111 124666666543 2222221 224479
Q ss_pred cccccccCCCCccccCCCCh-------hhHHHHHHHHhhhhhcCCCCcccchhHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 006618 404 DKDVVRTDRSVTFFDGDDNP-------NVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERL 476 (638)
Q Consensus 404 ~kDV~RT~~~~~~f~~~~~~-------~~~~L~~IL~~y~~~npdiGY~QGM~dl~a~Ll~v~~dE~~aFw~f~~lm~~~ 476 (638)
..|+.||.+.|.+|.+.... ++..|+|+..+|.....+.|||||-+.+++.+++.+. ++.+|..++.+|..+
T Consensus 232 rrdi~~~~~eh~~fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~~-~E~assv~~~lm~~~ 310 (948)
T KOG4436|consen 232 RRDIERTYPEHYFFKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQMP-VEEASSVKVQLMILY 310 (948)
T ss_pred HHHhhccCcceeeeccCccCCcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHhcCc-HHHHHHHHHHHHHhh
Confidence 99999999999999986554 6899999999999999999999999999999999996 889999999999864
Q ss_pred --CCCCCCCcchhhHHHHHHHHHHHhhCH-HHHHHHHHCCCCchhhhHHHHHHhcCcCCChhhHHHHHHHHHhhcCChhH
Q 006618 477 --GPNFNRDQNGMHSQLFALSKLVELLDN-PLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHL 553 (638)
Q Consensus 477 --~~~f~~~~~gm~~~~~~l~~Ll~~~dP-~L~~hL~~~~i~~~~f~~rWfl~lF~ref~~~~vlrLWD~~~~~~~~~~f 553 (638)
...|.+.+..+-..+..+....+-..| .|+.|+.+..++...+.-.||++.|...||+...-++.|.+..+ |..+
T Consensus 311 rl~~l~kpe~~~l~~~~~q~e~~~q~~sp~dl~sH~~eq~~h~S~~~rs~flt~~ltt~Pi~~a~r~~~~f~~e--gllk 388 (948)
T KOG4436|consen 311 RLRELSKPEMEPLGLCMFQLECTNQDQSPMDLFSHFPEQHFHTSMYARSWFLTNFLTTFPIFMAARISDTFSSE--GLLK 388 (948)
T ss_pred cccccCCcccchhHHHHHhhcccccccchhHHhhcccccCCCccHHHHHHHHHhhcccCchhhccccccccccc--cHHH
Confidence 456777777777788899999999999 99999999999999999999999999999999999999999855 5566
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHh
Q 006618 554 HLYVCVAILKRYRNKIMGEQMDFDTLLKFINE 585 (638)
Q Consensus 554 ll~valAiL~~~r~~Ll~~~~dfdeilk~l~~ 585 (638)
.+++.+|++...++.=+. ..|++..+++++.
T Consensus 389 ~fr~~ia~~~~~~d~~~~-s~D~EG~~~~~qr 419 (948)
T KOG4436|consen 389 RFRDSIAYLHQLRDIELE-SLDMEGMLSYFQR 419 (948)
T ss_pred HHhhhHHHHHHHhhhhhh-ccCccccccchhh
Confidence 668999999444443333 3499999999874
No 22
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=8.3e-11 Score=117.56 Aligned_cols=249 Identities=17% Similarity=0.251 Sum_probs=182.6
Q ss_pred CChHHHHHHHHhCCC---ChhhHHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhhCChHHHhhhhhhccccc
Q 006618 325 MDSNALRKRIFYGGV---DHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKG 401 (638)
Q Consensus 325 ~~~~~lk~~i~~~GI---p~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~e~~~ 401 (638)
....++|+ +.+.|. .+.+|+.|+..|..-.|+..... ....|.++..+...
T Consensus 30 telqelkq-larqgywaqshalrgkvyqrlirdipcrtvtp--------dasvysdivgkivg----------------- 83 (559)
T KOG2801|consen 30 TELQELKQ-LARQGYWAQSHALRGKVYQRLIRDIPCRTVTP--------DASVYSDIVGKIVG----------------- 83 (559)
T ss_pred HhHHHHHH-HHhcchHHhhhhhhhHHHHHHHhcCCccccCC--------chhHHHHHHHHHhc-----------------
Confidence 45567887 667776 68899999999999888754322 13567777654221
Q ss_pred cccccccccCCCCccccCC-------CChhhHHHHHHHHhhhhhcCCCCcccchhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006618 402 LIDKDVVRTDRSVTFFDGD-------DNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALME 474 (638)
Q Consensus 402 ~I~kDV~RT~~~~~~f~~~-------~~~~~~~L~~IL~~y~~~npdiGY~QGM~dl~a~Ll~v~~dE~~aFw~f~~lm~ 474 (638)
|.-..+.|-..|..+. +..+....+.||.+.+...|||.+|+.+..+++.+|.+.-||+++|---+.++.
T Consensus 84 ---khsssclplpefvdntqvpsyclnargegavrkilKOGanqfpdisfcpalpavvalllhysideaecfekacrila 160 (559)
T KOG2801|consen 84 ---KHSSSCLPLPEFVDNTQVPSYCLNARGEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILA 160 (559)
T ss_pred ---cCCcccccchhhcccCcCchhhhcCcCchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHHHHHHHhheeee
Confidence 1122222222222111 122446789999999999999999999999999999999899999987776664
Q ss_pred hcCCC---CCCCcchhhHHHHHHHHHHHhhCHHHHHHHHHCCCCchhhhHHHHHHhcCcCCChhhHHHHHHHHHhhcCCh
Q 006618 475 RLGPN---FNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSE 551 (638)
Q Consensus 475 ~~~~~---f~~~~~gm~~~~~~l~~Ll~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~ref~~~~vlrLWD~~~~~~~~~ 551 (638)
.-.+. .....-.+...+.+|..|+.++.-..++.+-...-+.......|-..+|. ++|+-...|++|+|+.+ |.
T Consensus 161 cndpgrrlidqsflafesscmtfgdlvnkycqaahklmvavsedvlqvyadwqrwlfg-elplcyfarvfdvflve--gy 237 (559)
T KOG2801|consen 161 CNDPGRRLIDQSFLAFESSCMTFGDLVNKYCQAAHKLMVAVSEDVLQVYADWQRWLFG-ELPLCYFARVFDVFLVE--GY 237 (559)
T ss_pred ecCcchhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhc-cchHHHHHHHhhheeec--ch
Confidence 32221 12223345667789999999999988888876665666666788777775 69999999999999988 66
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Q 006618 552 HLHLYVCVAILKRYRNKIMGEQMD----FDTLLKFINELSGRIDLDAILRDAEALCIC 605 (638)
Q Consensus 552 ~fll~valAiL~~~r~~Ll~~~~d----fdeilk~l~~l~~~~d~~~lL~~A~~L~~~ 605 (638)
+.++++++|||+...+.--..-.+ -.+|-.|++++..+...++++.+|.+++..
T Consensus 238 kvlyrvalailkffhkvragqplesdsvkqdirtfvrdiaktvspekllekafairlf 295 (559)
T KOG2801|consen 238 KVLYRVALAILKFFHKVRAGQPLESDSVKQDIRTFVRDIAKTVSPEKLLEKAFAIRLF 295 (559)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCccchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 899999999999987765433222 347888999999899999999999988654
No 23
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=97.23 E-value=0.00029 Score=78.73 Aligned_cols=79 Identities=37% Similarity=0.682 Sum_probs=68.8
Q ss_pred CCCCHHHHHHhhccCCCCCChHHHHHHHHhCCCChhhHHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhhC
Q 006618 307 VAPDPVEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSI 385 (638)
Q Consensus 307 ~~~~~~~W~~~l~~~g~~~~~~~lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~ 385 (638)
.+...++|...|+.+|...+..++-+++..+||++.+|++||.+|+|+|+.+++.++|..+....+..|..+..+-..+
T Consensus 46 ~~l~~~~~~~~f~~~~~~~~~~~~l~~i~~~gi~psir~evw~fll~~y~~~~~~~~~~~~r~~~~~~~~~l~~~c~~~ 124 (488)
T KOG2197|consen 46 KTLKPEKWQANFDPDGRLSGFVKLLKLIILGGIDPSIRGEVWEFLLGCYDLDSTFEERNQLRVARRPQYNELLLVCQMM 124 (488)
T ss_pred cccchhhhhhccCCCccccchhhhheeeecCCCCCcccchhHHHHhcccCCCCchHHHHHHHhhcccchHHHHHHcchh
Confidence 3455799999999999987666666668899999999999999999999999999999999999999999988765443
No 24
>PF14961 BROMI: Broad-minded protein
Probab=96.91 E-value=0.015 Score=69.37 Aligned_cols=173 Identities=18% Similarity=0.303 Sum_probs=117.6
Q ss_pred HHHHHHHHhhhhhcCCCCcccchhHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCC-----------CCCC---cchhhH-
Q 006618 426 HLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME-DESQSFWCFVALMERLGPN-----------FNRD---QNGMHS- 489 (638)
Q Consensus 426 ~~L~~IL~~y~~~npdiGY~QGM~dl~a~Ll~v~~-dE~~aFw~f~~lm~~~~~~-----------f~~~---~~gm~~- 489 (638)
++-.+||..|..+...-+| .|-.-.++.++++|. |-..+.-.+.+|-..+... +.+. .+|++-
T Consensus 1084 ~s~l~~~~~~~~~~~~~~y-~g~DWFvstvfli~~Gd~e~~~~fL~~fS~ll~SaflW~pRlh~s~~l~~~~~~s~i~p~ 1162 (1296)
T PF14961_consen 1084 KSSLHILFEFIHFCLQGSY-PGHDWFVSTVFLIMLGDKERSLQFLQRFSRLLTSAFLWPPRLHASIHLPVDTAESGIHPV 1162 (1296)
T ss_pred cchhHHHhhhhcccCCCCC-CCchhHHHHHHHHHcCChhHhHHHHHHHHHHHHHhHhccccccccccCCchhhhcCCCch
Confidence 3344555555555555455 477777777777774 4444443333333322111 1111 244443
Q ss_pred ---HHHHHHHHHHhhCHHHHHHHHHCCCCchhhhHHHHHHhcCcCCChhhHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 006618 490 ---QLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYR 566 (638)
Q Consensus 490 ---~~~~l~~Ll~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~ref~~~~vlrLWD~~~~~~~~~~fll~valAiL~~~r 566 (638)
.+..++.+|+...|.+|.-|...|.++...|-||+.-+|=..++|..++.--=+-+ ..|..|.+|+|+|+|+..+
T Consensus 1163 ~~~~~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~ci--l~G~dyqvY~~VailkHlq 1240 (1296)
T PF14961_consen 1163 YFCSCHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICI--LYGPDYQVYICVAILKHLQ 1240 (1296)
T ss_pred hhhHHHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHH--hcCccceeehhHHHHHHhh
Confidence 33568899999999999999999999999999999999999999998876544444 3477899999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHhCC-CCCCHHHHHHHHHHH
Q 006618 567 NKIMGEQMDFDTLLKFINELS-GRIDLDAILRDAEAL 602 (638)
Q Consensus 567 ~~Ll~~~~dfdeilk~l~~l~-~~~d~~~lL~~A~~L 602 (638)
+.|++.. .-.++.-|+++-+ .-+.+.+-+...+.|
T Consensus 1241 ~~ilq~~-q~q~L~~flke~~l~gF~~~~~~~yM~~L 1276 (1296)
T PF14961_consen 1241 PEILQHT-QTQDLQVFLKEEALRGFRVSDYLEYMENL 1276 (1296)
T ss_pred HHHHHhh-hhchHHHHhhhccccceeHHhHHHHHHHH
Confidence 9999765 4456777887754 335555555544444
No 25
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=92.20 E-value=0.045 Score=58.41 Aligned_cols=34 Identities=59% Similarity=1.096 Sum_probs=31.9
Q ss_pred CCcccchhHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 006618 442 LGYCQGMSDLLSPILFVMEDESQSFWCFVALMER 475 (638)
Q Consensus 442 iGY~QGM~dl~a~Ll~v~~dE~~aFw~f~~lm~~ 475 (638)
+|-.|||+|++||+|.-..||.++||||+++|.+
T Consensus 566 vglmqgmsdlvapilaevldesdtfwcfvglmqn 599 (781)
T KOG2224|consen 566 VGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQN 599 (781)
T ss_pred hhhhccchhhhhhHHHhhhccccchhhhhhhhcc
Confidence 5888999999999999888999999999999985
No 26
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=63.37 E-value=51 Score=27.55 Aligned_cols=65 Identities=14% Similarity=0.295 Sum_probs=41.8
Q ss_pred ccceEEEEeeCCceeEEeEecCCCCCCccccccccCcceeeeeeCCCeeEEEEecCCCCceEEEEEeCCCC--cCCceEe
Q 006618 64 ISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGL--AFPPLYF 141 (638)
Q Consensus 64 I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~y~~~~v~ls~I~sI~~~~p~~g~~~~il~~~dG~--~~P~L~F 141 (638)
.+|.|.|..+. -.+.|+|+.... .. ..+|++++|...++.|++..---+-|+.+++. .--.++|
T Consensus 12 ~~G~L~l~~d~--~~~~W~~~~~~~----------~~--~v~i~~~~I~~lq~Sp~~s~Kv~Lki~~~~~~~~~~~~f~F 77 (79)
T PF08567_consen 12 KDGTLTLTEDR--KPLEWTPKASDG----------PS--TVSIPLNDIKNLQQSPEGSPKVMLKIVLKDDSSEESKTFVF 77 (79)
T ss_dssp EEEEEEEETTC--SSEEEEECCSSS----------SS--EEEEETTTEEEEEE--TTSSTEEEEEEETTSC---CCCEEE
T ss_pred CCcEEEEecCC--ceEEEeecCCCC----------Cc--eEEEEHHHhhhhccCCCCCcceEEEEEEecCCcccceEEEE
Confidence 45999997542 237888863322 11 36799999999999998655455788888873 3445666
Q ss_pred e
Q 006618 142 Y 142 (638)
Q Consensus 142 ~ 142 (638)
+
T Consensus 78 ~ 78 (79)
T PF08567_consen 78 T 78 (79)
T ss_dssp -
T ss_pred e
Confidence 5
No 27
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=56.75 E-value=2.8 Score=46.12 Aligned_cols=128 Identities=18% Similarity=0.160 Sum_probs=80.6
Q ss_pred cccccccccCCCCccccCCCChhhHHHHHHHHhhhhhcCCCCcccchhHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC
Q 006618 402 LIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFN 481 (638)
Q Consensus 402 ~I~kDV~RT~~~~~~f~~~~~~~~~~L~~IL~~y~~~npdiGY~QGM~dl~a~Ll~v~~dE~~aFw~f~~lm~~~~~~f~ 481 (638)
.|+.|+..|.. +..+.+...+. |.+|.-+|+++||| +..+.+ .+...+.
T Consensus 2 ~~~~~~~~~~~----~~~~~~~~~~~----l~~~~~~~~~~~~~--~~~~~~---------------------~~~~~~~ 50 (397)
T KOG1102|consen 2 EIDSPVRLTFR----LRPRYGQKQNN----LAAYEPYNPEVGYC--VLHITS---------------------KSDGFQS 50 (397)
T ss_pred CCCcccccccc----CCCCccccccc----ccCCCccccccccc--hhhhhh---------------------ccccccc
Confidence 46778888877 33332222222 89999999999999 666655 1111112
Q ss_pred CCcchhhHHHHHHHHHHHhhCHHHHHHHHHCCCCchhhhHHHHHHhcCcCCChhhHHHHHHHHHhhcCChhHHHHHHHHH
Q 006618 482 RDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAI 561 (638)
Q Consensus 482 ~~~~gm~~~~~~l~~Ll~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~ref~~~~vlrLWD~~~~~~~~~~fll~valAi 561 (638)
.+...................+.-..|+...+ .....+..|..-.|...-......++||....+ +.....-+.-+.
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 127 (397)
T KOG1102|consen 51 SNERKLTELRDSPESIPDLSQSKRPGHVDSSE-PTNELYPKSDERIFKDKPLLSLTLDLWDVKLLE--GEQELTALSSSW 127 (397)
T ss_pred CCcccccccccCcccccccccccccccccccc-cccccccccccccccccccccccchhHHHHhhh--hHHHHHHHHHHh
Confidence 22222222222233444555667778888888 777888899999999999999999999999865 333433333333
Q ss_pred HH
Q 006618 562 LK 563 (638)
Q Consensus 562 L~ 563 (638)
++
T Consensus 128 ~~ 129 (397)
T KOG1102|consen 128 LK 129 (397)
T ss_pred hh
Confidence 33
No 28
>PF14472 DUF4429: Domain of unknown function (DUF4429)
Probab=51.68 E-value=15 Score=31.80 Aligned_cols=31 Identities=19% Similarity=0.529 Sum_probs=27.5
Q ss_pred eeeeCCCeeEEEEecCC-CCceEEEEEeCCCC
Q 006618 104 RAVPFTEVRSIRRHTPA-FGWQYIIVVLSSGL 134 (638)
Q Consensus 104 ~~v~ls~I~sI~~~~p~-~g~~~~il~~~dG~ 134 (638)
..|||++|-.|+.++|. .+.+|+.|++++|.
T Consensus 27 ~~ipl~~i~gV~~~~pg~~~~G~Lrf~~~~g~ 58 (94)
T PF14472_consen 27 KTIPLSAISGVEWKPPGGLTNGYLRFVLRGGA 58 (94)
T ss_pred EEEEHHHcceEEEEcCCceeEEEEEEEECCcC
Confidence 57999999999999995 77899999998865
No 29
>COG1507 Uncharacterized conserved protein [Function unknown]
Probab=43.34 E-value=33 Score=32.02 Aligned_cols=31 Identities=29% Similarity=0.587 Sum_probs=21.9
Q ss_pred CeeEEEEecCCCCceEEEEEe---CCCCcCCceEe
Q 006618 110 EVRSIRRHTPAFGWQYIIVVL---SSGLAFPPLYF 141 (638)
Q Consensus 110 ~I~sI~~~~p~~g~~~~il~~---~dG~~~P~L~F 141 (638)
-+..|-++.| .|.+-+|..- .||..+|.||.
T Consensus 20 gvl~I~~rcp-~g~P~VV~t~p~l~dg~PfPTly~ 53 (167)
T COG1507 20 GVLKIAYRCP-YGEPGVVKTAPKLDDGTPFPTLYY 53 (167)
T ss_pred CceEEEEECC-CCCceEEeecCCCCCCCcCCceee
Confidence 4556777777 4555555543 59999999999
No 30
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=35.57 E-value=1.8e+02 Score=24.95 Aligned_cols=72 Identities=21% Similarity=0.283 Sum_probs=48.0
Q ss_pred EEEEeeCceEEccCCccc-ccccceEEEEeeCCceeEEeEecCCCCCCccccccccCcceeeeeeCCCeeEEEEecCCCC
Q 006618 44 ELVYLKDNVTIHPTQFAS-ERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFG 122 (638)
Q Consensus 44 ~llf~Ks~V~vhpt~~~~-~~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~y~~~~v~ls~I~sI~~~~p~~g 122 (638)
.++|.+++|-++-...+. ..-.|.|.|+-+ .|-|+++.... .. ..+++|++|..+.......+
T Consensus 15 ~~~~~q~~V~LYdG~~K~~~~q~G~l~LTsH----Rliw~d~~~~~-----------~~-s~~l~L~~i~~~e~~~gf~~ 78 (89)
T PF11605_consen 15 TIVYQQDGVGLYDGDQKTPNFQNGRLYLTSH----RLIWVDDSDPS-----------KH-SIALPLSLISHIEYSAGFLK 78 (89)
T ss_dssp -EEEEEEEEEEEETTECSTT-SCEEEEEESS----EEEEEESSGHC-----------HH--EEEEGGGEEEEEEE-STTS
T ss_pred eEEEEecCeeeEcCCccCccccCCEEEEEee----EEEEEcCCCCc-----------ee-EEEEEchHeEEEEEEccccC
Confidence 789999999998766444 556899999844 78898755332 11 36899999999976665432
Q ss_pred -ceEEEEEeC
Q 006618 123 -WQYIIVVLS 131 (638)
Q Consensus 123 -~~~~il~~~ 131 (638)
..=|+|.++
T Consensus 79 sSpKI~l~l~ 88 (89)
T PF11605_consen 79 SSPKIILHLK 88 (89)
T ss_dssp SS-EEEEEES
T ss_pred CCCeEEEEec
Confidence 223666553
No 31
>PF04683 Proteasom_Rpn13: Proteasome complex subunit Rpn13 ubiquitin receptor; InterPro: IPR006773 This family was thought originally to be involved in cell-adhesion [, ], but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor. The 26S proteasome is a huge macromolecular protein-degradation machine consisting of a proteolytically active 20S core, in the form of four disc-like proteins, and one or two 19S regulatory particles. The regulatory particle(s) sit on the top and or bottom of the core, de-ubiquitinate the substrate peptides, unfold them and guide them into the narrow channel through the centre of the core. Rpn13 and its homologues dock onto the regulatory particle through the N-terminal region which binds Rpn2. The C-terminal part of the domain binds de-ubiquitinating enzyme Uch37/UCHL5 and enhances its isopeptidase activity. Rpn13 binds ubiquitin via a conserved amino-terminal region called the pleckstrin-like receptor for ubiquitin, termed Pru, domain []. The domain forms two contiguous anti-parallel beta-sheets with a configuration similar to the pleckstrin-homology domain (PHD) fold []. Rpn13's ability to bind ubiquitin and the proteasome subunit Rpn2/S1 simultaneously supports evidence of its role as a ubiquitin receptor. Finally, when complexed to di-ubiquitin, via the Pru, and Uch37 via the C-terminal part, it frees up the distal ubiquitin for de-ubiquitination by the Uch37 []. ; GO: 0005634 nucleus, 0005737 cytoplasm; PDB: 2Z4D_A 2KR0_A 2Z59_A 2R2Y_A.
Probab=32.60 E-value=2.6e+02 Score=23.67 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=30.7
Q ss_pred cccccceEEEEee-CCceeEEeEecCCCCCCccccccccCcceeeeeeCCCeeEEEEecCCCCceEE
Q 006618 61 SERISGRLKLIKQ-GSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYI 126 (638)
Q Consensus 61 ~~~I~G~L~l~~~-~~~~~l~W~P~~~~~~~~~~~~~d~~~y~~~~v~ls~I~sI~~~~p~~g~~~~ 126 (638)
.++-+|+|.|.+. ++-+.+.|.|-+..+. .-..+.|.-.|..-.++.+...|.=|+
T Consensus 12 pd~~KG~l~l~~~~d~l~~f~W~~r~~~~~----------~e~d~il~pg~~~f~~V~~c~tGRVy~ 68 (85)
T PF04683_consen 12 PDPRKGLLYLYKSEDGLLHFCWKPRDTTGE----------VEDDLILFPGDATFKKVPQCKTGRVYV 68 (85)
T ss_dssp E-SS-EEEEEEETTTS-EEEEEEETST-------------EEEEEEE-TTTEEEEE-TTSSTS-EEE
T ss_pred ECCCCEEEEEEECCCCeEEEEEEEcCcCCC----------cccceecCCCCeEEEECCcCCCCeEEE
Confidence 3568999999995 5789999999654310 011233444666666665555665554
No 32
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=30.49 E-value=33 Score=22.36 Aligned_cols=16 Identities=44% Similarity=0.746 Sum_probs=12.2
Q ss_pred CCcccchhHHHHHHHH
Q 006618 442 LGYCQGMSDLLSPILF 457 (638)
Q Consensus 442 iGY~QGM~dl~a~Ll~ 457 (638)
-||+||+.|.+--.|.
T Consensus 3 sgyiqgipdflkgylh 18 (31)
T PF08109_consen 3 SGYIQGIPDFLKGYLH 18 (31)
T ss_pred cccccccHHHHHHHHh
Confidence 4899999988765543
No 33
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=26.91 E-value=1e+02 Score=32.38 Aligned_cols=61 Identities=8% Similarity=0.085 Sum_probs=42.9
Q ss_pred HHHHHHHHCCCCchhhhHHHHHHhcCcCCC----hhhHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 006618 504 PLHNYFKQNDCLNYFFCFRWVLIQFKREFE----YEKTMRLWEVLWTHYLSEHLHLYVCVAILKR 564 (638)
Q Consensus 504 ~L~~hL~~~~i~~~~f~~rWfl~lF~ref~----~~~vlrLWD~~~~~~~~~~fll~valAiL~~ 564 (638)
-+|.||+++--.-.+-.|+||-.|.-.|+- |..++|-|-.++.+..+.-+.=|+++|+...
T Consensus 161 tIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lmrsqP~ll~~~~~kLW~RFFLlsVfaT 225 (323)
T cd01047 161 TIYRHLERNPENQFHPIFKYFENWCQDENRHGDFFAALLRAQPHLLNDGKNKLWIRFFLLSVYAT 225 (323)
T ss_pred HHHHHHHhCcccccchHHHHHHHHhcccchhhHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHh
Confidence 358999988666667789999999999987 5667777777765433333444566666654
No 34
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=24.57 E-value=1.2e+02 Score=32.06 Aligned_cols=61 Identities=10% Similarity=0.189 Sum_probs=41.4
Q ss_pred HHHHHHHHCCCCchhhhHHHHHHhcCcCCC----hhhHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 006618 504 PLHNYFKQNDCLNYFFCFRWVLIQFKREFE----YEKTMRLWEVLWTHYLSEHLHLYVCVAILKR 564 (638)
Q Consensus 504 ~L~~hL~~~~i~~~~f~~rWfl~lF~ref~----~~~vlrLWD~~~~~~~~~~fll~valAiL~~ 564 (638)
-+|.||+++--.-.+-.|+||-.|.-.|+- |..++|-+-.+|.+..+.-+.=|+++|+...
T Consensus 171 tIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lmrsqP~ll~g~~~kLW~RFFLLsVfaT 235 (337)
T TIGR02029 171 TIYRHLEENPENQFYPIFKYFESWCQDENRHGDAFAALMRSQPQLLNNWKAKLWSRFFLLSVYST 235 (337)
T ss_pred HHHHHHHhCcccccchHHHHHHHHhcccchhHHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHH
Confidence 358999998666667789999999999987 5666676666664322222333456665544
No 35
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=23.54 E-value=1.2e+02 Score=32.17 Aligned_cols=61 Identities=7% Similarity=0.129 Sum_probs=41.0
Q ss_pred HHHHHHHHCCCCchhhhHHHHHHhcCcCCC----hhhHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 006618 504 PLHNYFKQNDCLNYFFCFRWVLIQFKREFE----YEKTMRLWEVLWTHYLSEHLHLYVCVAILKR 564 (638)
Q Consensus 504 ~L~~hL~~~~i~~~~f~~rWfl~lF~ref~----~~~vlrLWD~~~~~~~~~~fll~valAiL~~ 564 (638)
-+|.||+++--.-.+-.|+||-.|.-.|+- |..++|-|-.++.+..+.-+.=|+++|+...
T Consensus 177 tIyRHLe~~Pe~r~~PIF~~FE~WCqDEnRHGdfF~almraqP~ll~g~~~kLW~RFFLlsVfaT 241 (351)
T CHL00185 177 TIYRHLEKNPEYRIYPIFKFFESWCQDENRHGDFFAALLKSQPHLLNGWKARLWCRFFLLSVFAT 241 (351)
T ss_pred HHHHHHHhCcccccchHHHHHHHHhcccchhHHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHH
Confidence 358999998766677789999999999987 5566666666664322222333456665544
No 36
>PRK03636 hypothetical protein; Provisional
Probab=23.00 E-value=83 Score=30.68 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=47.7
Q ss_pred eeEEEEecCCCCceEEEEEeCCCCcCCceEeecCChHHHHHHHHhccccccccCCCceEEEcC
Q 006618 111 VRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVND 173 (638)
Q Consensus 111 I~sI~~~~p~~g~~~~il~~~dG~~~P~L~F~~GG~~~fl~~L~~~~~l~rs~~d~~l~lv~~ 173 (638)
+..||+-.-..+..++++++-.|+.-+|+-|+.||. .+-++-+-+.++. -+-+.++|+.=-
T Consensus 40 L~~VHFVe~~~~~~r~l~iS~~~~~~~pF~F~k~~~-~~~d~e~aFhdir-lN~~~~iYIql~ 100 (179)
T PRK03636 40 MEKVHFVENAEYCPRGLVMSAHGVDDVPFRFFKGNV-MTTDAEKSFHDIR-LNRDEDIYIQLN 100 (179)
T ss_pred HhheeeeccccCCCceEEEEeeccCCCceEEEeCCc-eecCHHHHHHHHH-cCCCCCeEEEEe
Confidence 346777777778889989998888899999999998 7778887777776 444556888743
No 37
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=22.98 E-value=1.3e+02 Score=32.05 Aligned_cols=61 Identities=7% Similarity=0.195 Sum_probs=40.3
Q ss_pred HHHHHHHHCCCCchhhhHHHHHHhcCcCCC----hhhHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 006618 504 PLHNYFKQNDCLNYFFCFRWVLIQFKREFE----YEKTMRLWEVLWTHYLSEHLHLYVCVAILKR 564 (638)
Q Consensus 504 ~L~~hL~~~~i~~~~f~~rWfl~lF~ref~----~~~vlrLWD~~~~~~~~~~fll~valAiL~~ 564 (638)
-+|.||+++--.-.+-.|+||-.|.-.|+- |..++|-+-.+|.+..+.-+.=|+++|+...
T Consensus 177 tIyRHLe~~Pe~r~~PIFk~Fe~WCqDEnRHGd~Fa~lmraqP~ll~g~~~kLW~RFFLLsVfaT 241 (357)
T PLN02508 177 TIYRHLQANPDYQLYPIFKYFENWCQDENRHGDFFSALLKAQPQFLNDWKAKLWSRFFCLSVYVT 241 (357)
T ss_pred HHHHHHHhCcccccchHHHHHHHHhcccchhHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHHH
Confidence 358899988666667789999999999986 5556666666654322222333456665544
No 38
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=21.80 E-value=1.1e+02 Score=32.74 Aligned_cols=60 Identities=10% Similarity=0.141 Sum_probs=40.9
Q ss_pred HHHHHHHCCCCchhhhHHHHHHhcCcCCC----hhhHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 006618 505 LHNYFKQNDCLNYFFCFRWVLIQFKREFE----YEKTMRLWEVLWTHYLSEHLHLYVCVAILKR 564 (638)
Q Consensus 505 L~~hL~~~~i~~~~f~~rWfl~lF~ref~----~~~vlrLWD~~~~~~~~~~fll~valAiL~~ 564 (638)
+|.||+++--.-.+-.|+||-.|.-.|+- |..++|-|-.++.+..+.-+.=|+.+|+...
T Consensus 182 IyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lmraqP~ll~g~~~kLW~RFFLlsVfaT 245 (355)
T PRK13654 182 IYRHLEKHPEHRFHPIFKFFENWCQDENRHGDFFALLMRAQPKLLKGWVNRLWIRFFLLAVFAT 245 (355)
T ss_pred HHHHHHhCcccccCchHHHHHHHhcccchhHHHHHHHHhcCchhhcchHHHHHHHHHHHHHHhh
Confidence 58999988666667789999999999987 5566666666664322222333456666544
Done!