Query 006618
Match_columns 638
No_of_seqs 302 out of 1656
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 04:24:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006618.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006618hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fkm_A Protein (GYP1P), ORF YO 100.0 2.1E-51 7.2E-56 445.2 25.1 289 310-612 7-388 (396)
2 2qq8_A TBC1 domain family memb 100.0 3.7E-51 1.3E-55 434.3 25.3 291 307-605 17-311 (334)
3 2qfz_A TBC1 domain family memb 100.0 2.9E-51 9.8E-56 437.3 23.4 289 309-611 24-341 (345)
4 3qye_A TBC1 domain family memb 100.0 6.1E-50 2.1E-54 424.7 17.1 271 310-602 29-307 (331)
5 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 1.4E-48 4.8E-53 410.5 18.4 261 311-602 5-274 (310)
6 4hl4_A TBC1 domain family memb 100.0 9.5E-46 3.2E-50 385.7 19.3 266 310-607 19-290 (292)
7 3qwl_A TBC1 domain family memb 100.0 5.4E-41 1.8E-45 348.2 18.9 260 312-608 27-288 (294)
8 2cay_A VPS36 PH domain, vacuol 95.9 0.02 6.7E-07 52.5 7.7 102 44-161 30-136 (145)
9 2hth_B Vacuolar protein sortin 94.9 0.17 6E-06 45.9 10.6 95 44-155 18-126 (140)
10 1pfj_A TFIIH basal transcripti 89.9 0.98 3.3E-05 38.8 7.6 62 66-145 22-83 (108)
11 2kr0_A Proteasomal ubiquitin r 38.8 2E+02 0.0067 30.4 11.3 103 41-158 24-133 (411)
12 1y5o_A TFB1, RNA polymerase II 24.8 2.5E+02 0.0087 24.0 7.6 55 63-131 11-65 (115)
13 2r2y_A Protein ADRM1; proteaso 23.1 4.1E+02 0.014 23.9 9.2 67 56-134 38-105 (153)
No 1
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=2.1e-51 Score=445.21 Aligned_cols=289 Identities=25% Similarity=0.487 Sum_probs=252.6
Q ss_pred CHHHHHHhhccCCCCCChHHHHHHHHhCCCChhhHHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhhCChHH
Q 006618 310 DPVEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQ 389 (638)
Q Consensus 310 ~~~~W~~~l~~~g~~~~~~~lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~ 389 (638)
+.++|+++++.+. .++.++||+ ++++|||+.+|+.||+.|||++|.+.+ +|+.....++..|..++.+|......
T Consensus 7 R~~kw~~lL~~~~-~~d~~~Lr~-l~~~GIP~~lR~~vW~~LLg~~~~~~~--~~~~~l~~~~~~Y~~l~~~~~~~~~~- 81 (396)
T 1fkm_A 7 RISKFDNILKDKT-IINQQDLRQ-ISWNGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRKRKEYRDSLKHTFSDQHS- 81 (396)
T ss_dssp HHHHHHHHHSSCS-BCCHHHHHH-HHTTCCCGGGHHHHHHHHTTCSCSBGG--GHHHHHHHHHHHHHHHHHHTSSSSCS-
T ss_pred HHHHHHHHHcCCC-CCCHHHHHH-HHHcCCCHHHHHHHHHHHHCCCCCChh--HHHHHHHHHHHHHHHHHHHHhhccCc-
Confidence 4689999998763 489999999 567899999999999999999998764 46777788899999999987652111
Q ss_pred HhhhhhhccccccccccccccCCCCccccCCCChhhHHHHHHHHhhhhhcCCCCcccchhHHHHHHHHhcC---------
Q 006618 390 ARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME--------- 460 (638)
Q Consensus 390 ~~~~~~~~e~~~~I~kDV~RT~~~~~~f~~~~~~~~~~L~~IL~~y~~~npdiGY~QGM~dl~a~Ll~v~~--------- 460 (638)
...+..++|++||.||+|++++|.. ..+++.|+|||.+|+.+||++||||||++|++|||+++.
T Consensus 82 -----~~~~~~~qI~~Dv~RT~p~~~~F~~--~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~ 154 (396)
T 1fkm_A 82 -----RDIPTWHQIEIDIPRTNPHIPLYQF--KSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQI 154 (396)
T ss_dssp -----THHHHHHHHHHHGGGSSTTSGGGGS--HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGG
T ss_pred -----ccHHHHHHHHHHhhhhCCCcccccC--chHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhcccccc
Confidence 1223457899999999999999986 358899999999999999999999999999999998752
Q ss_pred ---------C----------HHHHHHHHHHHHHhcCCCCCCCcchhhHHHHHHHHHHHhhCHHHHHHHHHCCCCchhhhH
Q 006618 461 ---------D----------ESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCF 521 (638)
Q Consensus 461 ---------d----------E~~aFw~f~~lm~~~~~~f~~~~~gm~~~~~~l~~Ll~~~dP~L~~hL~~~~i~~~~f~~ 521 (638)
+ |++|||||++||+++..+|..++.|+...+..++.||+..||+||+||++.++++.+|++
T Consensus 155 ~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~ 234 (396)
T 1fkm_A 155 DDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAF 234 (396)
T ss_dssp GGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHH
T ss_pred ccccccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 1 999999999999999899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcCCChhhHHHHHHHHHhhc---------------------------------------------------C-
Q 006618 522 RWVLIQFKREFEYEKTMRLWEVLWTHY---------------------------------------------------L- 549 (638)
Q Consensus 522 rWfl~lF~ref~~~~vlrLWD~~~~~~---------------------------------------------------~- 549 (638)
+||+++|+++||+++++||||++|+++ .
T Consensus 235 rW~l~LF~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 314 (396)
T 1fkm_A 235 RWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVE 314 (396)
T ss_dssp HHHHTTTGGGSCHHHHHHHHHHHHHHHC----------------------------------------------------
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999976 1
Q ss_pred --------C-hhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHHhccCCCC
Q 006618 550 --------S-EHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGR----IDLDAILRDAEALCICAGENGAA 612 (638)
Q Consensus 550 --------~-~~fll~valAiL~~~r~~Ll~~~~dfdeilk~l~~l~~~----~d~~~lL~~A~~L~~~~~e~~~~ 612 (638)
+ ..|++|+|+|||..+|+.||+ +||++++++|+++|.. .|++.+|.+|..++.....+..+
T Consensus 315 ~~~~~~~~~~~~~~~~v~~AlL~~~r~~Ll~--~df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~~~~~ 388 (396)
T 1fkm_A 315 DSGKMRQSSLNEFHVFVCAAFLIKWSDQLME--MDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSLYKDATSH 388 (396)
T ss_dssp --------CHHHHHHHHHHHHHHHTHHHHTT--CCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHHC-----
T ss_pred cchhccccchHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHHHhccHHH
Confidence 1 379999999999999999995 5999999999999864 58999999999998887666543
No 2
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.7e-51 Score=434.29 Aligned_cols=291 Identities=20% Similarity=0.376 Sum_probs=242.1
Q ss_pred CCCCHHHHH-HhhccCCCCCChHHHHHHHHhCCCChhhHHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhhC
Q 006618 307 VAPDPVEWT-TFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSI 385 (638)
Q Consensus 307 ~~~~~~~W~-~~l~~~g~~~~~~~lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~ 385 (638)
......+|. .++.+|+...+.+++|+ ++++|||+++|+.||+.|+|+. +..+.+.+..+.+..++.|..+...+...
T Consensus 17 ~~~~~~~W~~~il~~w~~~~~~~~lr~-l~~~GIP~~lR~~vW~~llg~~-~~~~~~~y~~ll~~~~~~~~~~~~~~~~~ 94 (334)
T 2qq8_A 17 QGNAVLTWNNEILPNWETMWCSRKVRD-LWWQGIPPSVRGKVWSLAIGNE-LNITHELFDICLARAKERWRSLSTGGSEV 94 (334)
T ss_dssp SSCHHHHHHHTTGGGCC--CCCHHHHH-HHHTCCCHHHHHHHHHHHHCCT-TCCCHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHhHHhccChHHHHH-HHHCCCCHHHHHHHHHHHhCCc-cccCHHHHHHHHHHHHHHHHHhccccccC
Confidence 345678998 59999999999999999 6689999999999999999985 46677777777666667776665443211
Q ss_pred ChHHH-hhhhhhccccccccccccccCCCCccccCCCChhhHHHHHHHHhhhhhcCCCCcccchhHHHHHHHHhcCCHHH
Q 006618 386 SPEQA-RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQ 464 (638)
Q Consensus 386 ~~~~~-~~~~~~~e~~~~I~kDV~RT~~~~~~f~~~~~~~~~~L~~IL~~y~~~npdiGY~QGM~dl~a~Ll~v~~dE~~ 464 (638)
+..+. .......+..++|++||.||+|++++|.. .+++++.|++||.+|+.+||++||||||++|+|+||+++ +|++
T Consensus 95 ~~~d~~~~~~~~~~~~~~I~~Dv~RT~p~~~~F~~-~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~-~E~~ 172 (334)
T 2qq8_A 95 ENEDAGFSAADREASLELIKLDISRTFPNLCIFQQ-GGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNL-DTAD 172 (334)
T ss_dssp ------------CCHHHHHHHHHHTSSGGGCSSST-TSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHS-CHHH
T ss_pred cccccccccccchhHHHHHHHHHhhcCCCchhhcC-CCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcC-CHHH
Confidence 11100 00011234567999999999999999986 456889999999999999999999999999999999998 5999
Q ss_pred HHHHHHHHHHhcC--CCCCCCcchhhHHHHHHHHHHHhhCHHHHHHHHHCCCCchhhhHHHHHHhcCcCCChhhHHHHHH
Q 006618 465 SFWCFVALMERLG--PNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWE 542 (638)
Q Consensus 465 aFw~f~~lm~~~~--~~f~~~~~gm~~~~~~l~~Ll~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~ref~~~~vlrLWD 542 (638)
|||||+++|+++. .+|..+++++...+..++.|++..+|+||+||++.|+++.+|+++||+++|+++||+++++||||
T Consensus 173 aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD 252 (334)
T 2qq8_A 173 AFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWD 252 (334)
T ss_dssp HHHHHHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHH
Confidence 9999999998753 35667889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Q 006618 543 VLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCIC 605 (638)
Q Consensus 543 ~~~~~~~~~~fll~valAiL~~~r~~Ll~~~~dfdeilk~l~~l~~~~d~~~lL~~A~~L~~~ 605 (638)
++|++ |..|++++|+|||..+++.|++ +++++++++++++|..+|++.++..|..+...
T Consensus 253 ~~l~e--g~~~l~~valaiL~~~~~~Ll~--~d~~~il~~L~~lp~~~d~~~l~~~a~~l~~~ 311 (334)
T 2qq8_A 253 VFCRD--GEEFLFRTALGILKLFEDILTK--MDFIHMAQFLTRLPEDLPAEELFASIATIQMQ 311 (334)
T ss_dssp HHHHH--CHHHHHHHHHHHHHHTHHHHHT--CCHHHHHHHHHSCCTTCCHHHHHHHHHHCCCE
T ss_pred HHHHc--CCHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHhCCCcCCHHHHHHHHHHccCc
Confidence 99987 6789999999999999999995 49999999999999899999999999987654
No 3
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=2.9e-51 Score=437.27 Aligned_cols=289 Identities=25% Similarity=0.465 Sum_probs=249.1
Q ss_pred CCHHHHHHhhccCCCCCChHHHHHHHHhCCCChhhHHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhhCChH
Q 006618 309 PDPVEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 388 (638)
Q Consensus 309 ~~~~~W~~~l~~~g~~~~~~~lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~ 388 (638)
.+.++|.++++.+ .++.++||+. +++|||+.+|+.||+.|||++|.+. ++|......++..|..++.+|......
T Consensus 24 ~r~~kw~~~l~~~--~~d~~~Lr~l-~~~GiP~~~R~~vW~~llg~~p~~~--~~~~~~l~~~~~~Y~~l~~~~~~~~~~ 98 (345)
T 2qfz_A 24 SRLDKFKQLLAGP--NTDLEELRRL-SWSGIPKPVRPMTWKLLSGYLPANV--DRRPATLQRKQKEYFAFIEHYYDSRND 98 (345)
T ss_dssp CHHHHHHHHHHCS--BCCHHHHHHH-HTTCCCGGGHHHHHHHHTTSSCSBG--GGHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHcCC--CCCHHHHHHH-HHCCCCHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 4678999999865 4899999995 5799999999999999999998765 456777788899999999988653221
Q ss_pred HHhhhhhhccccccccccccccCCCCccccCCCChhhHHHHHHHHhhhhhcCCCCcccchhHHHHHHHHhcC--------
Q 006618 389 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME-------- 460 (638)
Q Consensus 389 ~~~~~~~~~e~~~~I~kDV~RT~~~~~~f~~~~~~~~~~L~~IL~~y~~~npdiGY~QGM~dl~a~Ll~v~~-------- 460 (638)
+ ...+..++|++||.||+|+ ++|..+ .+++.|+|||.+|+.+||++||||||++|++|||+++.
T Consensus 99 ~-----~~~~~~~~I~~Dv~RT~p~-~~F~~~--~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~ 170 (345)
T 2qfz_A 99 E-----VHQDTYRQIHIDIPRMSPE-ALILQP--KVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEE 170 (345)
T ss_dssp -------CHHHHHHHHHHGGGCSCH-HHHTSH--HHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC---
T ss_pred c-----chHHHHHHHHHhCcccCCc-cccCCc--hHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhccccc
Confidence 1 1223457999999999999 999864 47789999999999999999999999999999998763
Q ss_pred ----------------CHHHHHHHHHHHHHhcCCCCCCCcchhhHHHHHHHHHHHhhCHHHHHHHHHCCCCchhhhHHHH
Q 006618 461 ----------------DESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWV 524 (638)
Q Consensus 461 ----------------dE~~aFw~f~~lm~~~~~~f~~~~~gm~~~~~~l~~Ll~~~dP~L~~hL~~~~i~~~~f~~rWf 524 (638)
+|++|||||+++|+++..+|..+++|+...+..+..|++..+|+||+||++.++++.+|+++||
T Consensus 171 ~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~ 250 (345)
T 2qfz_A 171 VDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWM 250 (345)
T ss_dssp --CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 2899999999999999889999999999999999999999999999999999999999999999
Q ss_pred HHhcCcCCChhhHHHHHHHHHhhcCCh-hHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCC----CCHHHHHHHH
Q 006618 525 LIQFKREFEYEKTMRLWEVLWTHYLSE-HLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGR----IDLDAILRDA 599 (638)
Q Consensus 525 l~lF~ref~~~~vlrLWD~~~~~~~~~-~fll~valAiL~~~r~~Ll~~~~dfdeilk~l~~l~~~----~d~~~lL~~A 599 (638)
+++|+++||+++++||||++|+++.+. .|++|+|+|||..+++.||++. |+++++++|+++|.. .|++.++..|
T Consensus 251 ~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~-d~~~il~~L~~~p~~~~~~~di~~ll~~A 329 (345)
T 2qfz_A 251 NNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEK-DFQELLLFLQNLPTAHWDDEDISLLLAEA 329 (345)
T ss_dssp HTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCC-CHHHHHHHHTSCSCTTCCHHHHHHHHHHH
T ss_pred HHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHcCCCcCCchhHHHHHHHHH
Confidence 999999999999999999999985442 3899999999999999999754 999999999999865 3799999999
Q ss_pred HHHHHHhccCCC
Q 006618 600 EALCICAGENGA 611 (638)
Q Consensus 600 ~~L~~~~~e~~~ 611 (638)
..+..+...+..
T Consensus 330 ~~l~~~~~~~~~ 341 (345)
T 2qfz_A 330 YRLKFAFADAPN 341 (345)
T ss_dssp HHHHHHC-----
T ss_pred HHHHHHHHhhHh
Confidence 999998866553
No 4
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=6.1e-50 Score=424.67 Aligned_cols=271 Identities=20% Similarity=0.400 Sum_probs=236.2
Q ss_pred CHHHHHHhhccCCC---CCChHHHHHHHHhCCCChhhHHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhhCC
Q 006618 310 DPVEWTTFLDNEGR---VMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSIS 386 (638)
Q Consensus 310 ~~~~W~~~l~~~g~---~~~~~~lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~ 386 (638)
+.++|+++++.+|+ ..+.+++|+++ ++|||+.+|+.||++|+|++++.++..++ ...++..|..+..++.
T Consensus 29 ~~~~W~~~l~~~~~~~~~~~~~~l~~~~-~~GIP~~lR~~vW~~Llg~~~~~~~~~~~---~~~~~~~Y~~l~~~~~--- 101 (331)
T 3qye_A 29 VTTVWEKMLSTPGRSKIKFDMEKMHSAV-GQGVPRHHRGEIWKFLAEQFHLKHQFPSK---QQPKDVPYKELLKQLT--- 101 (331)
T ss_dssp HHHHHHHHHTCTTGGGCCCCHHHHHHHH-HTCCCGGGHHHHHHHHHHHHHHHCCCCSS---SCCCCCCHHHHTTSCC---
T ss_pred HHHHHHHHhccCCCCcccCCHHHHHHHH-HcCCCHHHHHHHHHHHhCcchhhhcchhh---hhhchHHHHHHHHhcC---
Confidence 46799999998887 36789999955 78999999999999999986533221111 1234567887765421
Q ss_pred hHHHhhhhhhccccccccccccccCCCCccccCCCChhhHHHHHHHHhhhhhcCCCCcccchhHHHHHHHHhcCCHHHHH
Q 006618 387 PEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSF 466 (638)
Q Consensus 387 ~~~~~~~~~~~e~~~~I~kDV~RT~~~~~~f~~~~~~~~~~L~~IL~~y~~~npdiGY~QGM~dl~a~Ll~v~~dE~~aF 466 (638)
...++|++||+||+|++++|..+.++++..|++||.+|+.+||++||||||++|+++||+++ +|++||
T Consensus 102 -----------~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~-~E~~aF 169 (331)
T 3qye_A 102 -----------SQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHM-SEEEAF 169 (331)
T ss_dssp -----------TTHHHHHHHHTTSSTTSTTTCSTTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTS-CHHHHH
T ss_pred -----------CchhHHHHhhcccCCCchhhcCCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHh-hHHHHH
Confidence 22468999999999999999998889999999999999999999999999999999999998 599999
Q ss_pred HHHHHHHHhc--CCCCCCCcchhhHHHHHHHHHHHhhCHHHHHHHHHCCCCchhhhHHHHHHhcCcCCChhhHHHHHHHH
Q 006618 467 WCFVALMERL--GPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVL 544 (638)
Q Consensus 467 w~f~~lm~~~--~~~f~~~~~gm~~~~~~l~~Ll~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~ref~~~~vlrLWD~~ 544 (638)
|||+++|+++ ..+|..++.++...+..+..|++..+|+||+||++.|+++.+|+++||+++|+++||++.++||||++
T Consensus 170 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~ 249 (331)
T 3qye_A 170 KMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMI 249 (331)
T ss_dssp HHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHH
Confidence 9999999874 56788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCC---CHHHHHHHHHHH
Q 006618 545 WTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRI---DLDAILRDAEAL 602 (638)
Q Consensus 545 ~~~~~~~~fll~valAiL~~~r~~Ll~~~~dfdeilk~l~~l~~~~---d~~~lL~~A~~L 602 (638)
|++ |..+++++|+|||..+++.|+++. ++++++++|++...++ |++.++.+|..+
T Consensus 250 l~~--g~~~l~~valaiL~~~~~~ll~~~-~~~~il~~l~~~~p~~~~~di~~li~~A~~l 307 (331)
T 3qye_A 250 FLQ--GTEVIFKVALSLLGSHKPLILQHE-NLETIVDFIKSTLPNLGLVQMEKTINQVFEM 307 (331)
T ss_dssp HHH--CTTHHHHHHHHHHHHTHHHHHTCC-SHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC
T ss_pred HHC--CcHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHhhCCCCCHHHHHHHHHHHHhC
Confidence 988 667999999999999999999765 9999999999954456 678888888655
No 5
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-48 Score=410.54 Aligned_cols=261 Identities=23% Similarity=0.409 Sum_probs=230.8
Q ss_pred HHHHHHhhccCCCCC--ChHHHHHHHHhCCCChhhHHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhhCChH
Q 006618 311 PVEWTTFLDNEGRVM--DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 388 (638)
Q Consensus 311 ~~~W~~~l~~~g~~~--~~~~lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~ 388 (638)
.++|.+++++|++.. +.+++|++ +++|||+.+|+.||+.|+|+.+. ....+.|..+..+.
T Consensus 5 ~~~W~~~~~~w~~~~~~~~~~l~~l-~~~GIP~~lR~~vW~~llg~~~~-----------~~~~~~Y~~l~~~~------ 66 (310)
T 3hzj_A 5 LYSWGELLGKWHSNLGARPKGLSTL-VKSGVPEALRAEVWQLLAGCHDN-----------QAMLDRYRILITKD------ 66 (310)
T ss_dssp -CCHHHHHHHHHTSTTSCCTTHHHH-HHHCCCGGGHHHHHHHHTTCCCC-----------HHHHHHHHHHTTSC------
T ss_pred HHHHHHHHHHHhhhcccCHHHHHHH-HHCCCCHHHHHHHHHHHHCCCcc-----------hhHHHHHHHHHhcc------
Confidence 579999999987764 67889995 58999999999999999999652 12245677765421
Q ss_pred HHhhhhhhccccccccccccccCCCCccccCCCChhhHHHHHHHHhhhhhcCCCCcccchhHHHHHHHHhcCCHHHHHHH
Q 006618 389 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWC 468 (638)
Q Consensus 389 ~~~~~~~~~e~~~~I~kDV~RT~~~~~~f~~~~~~~~~~L~~IL~~y~~~npdiGY~QGM~dl~a~Ll~v~~dE~~aFw~ 468 (638)
.+..++|++||+||+|++++|..+.+.+++.|++||.+|+.+||++||||||++|+++||+++ +|++||||
T Consensus 67 --------~~~~~~I~~Dv~Rt~p~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~-~e~~aF~~ 137 (310)
T 3hzj_A 67 --------SAQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHM-PEEQAFCV 137 (310)
T ss_dssp --------CTTHHHHHHHHTTSSTTSTTTSSTTSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHS-CHHHHHHH
T ss_pred --------CCcHHHHHHHHHhhCCCchhhcCCCchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhC-CHHHHHHH
Confidence 123468999999999999999988888999999999999999999999999999999999999 59999999
Q ss_pred HHHHHHh--cCCCCCCCcchhhHHHHHHHHHHHhhCHHHHHHHHHCCCCchhhhHHHHHHhcCcCCChhhHHHHHHHHHh
Q 006618 469 FVALMER--LGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWT 546 (638)
Q Consensus 469 f~~lm~~--~~~~f~~~~~gm~~~~~~l~~Ll~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~ref~~~~vlrLWD~~~~ 546 (638)
|+++|++ +..+|..+.+++...+..++.+++..+|+||+||++.|+++.+|+++||+++|+++||+++++||||++++
T Consensus 138 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~ 217 (310)
T 3hzj_A 138 LVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLC 217 (310)
T ss_dssp HHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccccccHHHHHHHHHHHHHHHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 9999987 55678788889999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH-hCCC----CCCHHHHHHHHHHH
Q 006618 547 HYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFIN-ELSG----RIDLDAILRDAEAL 602 (638)
Q Consensus 547 ~~~~~~fll~valAiL~~~r~~Ll~~~~dfdeilk~l~-~l~~----~~d~~~lL~~A~~L 602 (638)
+ |..+++++|+|||..+++.|++. |+++++++|+ .+|. ..|++.++..|..+
T Consensus 218 ~--g~~~l~~v~lail~~~~~~Ll~~--d~~~~l~~l~~~lp~~~~~~~d~~~ll~~A~~l 274 (310)
T 3hzj_A 218 E--GLNIIFHVALALLKTSKEDLLQA--DFEGALKFFRVQLPKRYRAEENARRLMEQACNI 274 (310)
T ss_dssp H--CTTHHHHHHHHHHHHTHHHHHTC--CHHHHHHHHHTHHHHTTCSHHHHHHHHHHHHHS
T ss_pred C--CcHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHhCcccccccccHHHHHHHHHhc
Confidence 8 66899999999999999999964 9999999997 5653 35899999999877
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=9.5e-46 Score=385.74 Aligned_cols=266 Identities=18% Similarity=0.268 Sum_probs=226.2
Q ss_pred CHHHHHHhhccCCCCCChHHHHHHHHhC-C-CChhhHHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhhCCh
Q 006618 310 DPVEWTTFLDNEGRVMDSNALRKRIFYG-G-VDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISP 387 (638)
Q Consensus 310 ~~~~W~~~l~~~g~~~~~~~lk~~i~~~-G-Ip~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~ 387 (638)
+.++++..+.. ..++.++||+.++.+ | +|+++|+.||+.|+|+.+..... .|.....
T Consensus 19 k~~~i~~~l~~--~~~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~------------~~~~~~~------- 77 (292)
T 4hl4_A 19 KVAEIHQALNS--DPTDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPP------------ISGKNLR------- 77 (292)
T ss_dssp HHHHHHHHHTS--SSCCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCS------------CCCTTHH-------
T ss_pred HHHHHHHHHcC--CcccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCC------------chhhhhc-------
Confidence 34677777744 358999999977653 3 78999999999999998765421 1111000
Q ss_pred HHHhhhhhhccccccccccccccCCCCccccCC--CChhhHHHHHHHHhhhhhcCCCCcccchhHHHHHHHHhcCCHHHH
Q 006618 388 EQARRFTKFRERKGLIDKDVVRTDRSVTFFDGD--DNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQS 465 (638)
Q Consensus 388 ~~~~~~~~~~e~~~~I~kDV~RT~~~~~~f~~~--~~~~~~~L~~IL~~y~~~npdiGY~QGM~dl~a~Ll~v~~dE~~a 465 (638)
...+..++|++||.||+++++.|..+ .+.+++.|++||.+|+.+||++||||||++|+++||+++ +|++|
T Consensus 78 -------~~~~~~~qI~~Dv~RT~~~~~~~~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~-~e~~a 149 (292)
T 4hl4_A 78 -------QMSKDYQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVV-GERLA 149 (292)
T ss_dssp -------HHCTTHHHHHHHHHTTGGGSCTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHH-CHHHH
T ss_pred -------ccchhHHHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHc-CHHHH
Confidence 11234578999999999999888642 345678999999999999999999999999999999998 59999
Q ss_pred HHHHHHHHHhcCC-CCCCCcchhhHHHHHHHHHHHhhCHHHHHHHHHCCCCchhhhHHHHHHhcCcCCC-hhhHHHHHHH
Q 006618 466 FWCFVALMERLGP-NFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFE-YEKTMRLWEV 543 (638)
Q Consensus 466 Fw~f~~lm~~~~~-~f~~~~~gm~~~~~~l~~Ll~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~ref~-~~~vlrLWD~ 543 (638)
||||+++|++..+ .|..+..++...+..++.+++..+|+||+||++.++. .+|+++||+++|+++++ +++++||||+
T Consensus 150 F~~l~~l~~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~P~L~~hL~~~~i~-~~~~~~W~ltlF~~~l~~~~~~~rlWD~ 228 (292)
T 4hl4_A 150 TSLVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEVG-TIFALSWLITWFGHVLSDFRHVVRLYDF 228 (292)
T ss_dssp HHHHHHHHHTTTTGGGCSSSCTTTGGGGGHHHHHHHHCHHHHHHHC-CCCC-SGGGHHHHHTTTTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCC-cchHHHHHHHHHhhhcCcHHHHHHHHHH
Confidence 9999999997555 4667788999999999999999999999999999994 68999999999999996 9999999999
Q ss_pred HHhhcCChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhc
Q 006618 544 LWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAG 607 (638)
Q Consensus 544 ~~~~~~~~~fll~valAiL~~~r~~Ll~~~~dfdeilk~l~~l~~~~d~~~lL~~A~~L~~~~~ 607 (638)
+|++ +..+++|+|+|||..+++.||++..++++++++++++|..+|++.++.+|..|+.+.+
T Consensus 229 ~l~~--g~~~~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp~~~d~~~li~~A~~l~~~~p 290 (292)
T 4hl4_A 229 FLAC--HPLMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFVQFP 290 (292)
T ss_dssp HHHS--CTTHHHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCCSSCCHHHHHHHHHHHHHHSC
T ss_pred HHHc--CCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHCC
Confidence 9988 5679999999999999999998877899999999999999999999999999998654
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=5.4e-41 Score=348.18 Aligned_cols=260 Identities=14% Similarity=0.205 Sum_probs=211.5
Q ss_pred HHHHHhhccCCCCCChHHHHHHHHhCCCChhhHHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhhCChHHHh
Q 006618 312 VEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQAR 391 (638)
Q Consensus 312 ~~W~~~l~~~g~~~~~~~lk~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~ 391 (638)
+..+.++. +..+|.++||+.+++||||+.+|+.||++|||+.|.+++. |+.+.++++++|++++++...
T Consensus 27 ~~~~~ll~--~~~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~--~~~~l~~kr~eY~~l~~~~~~------- 95 (294)
T 3qwl_A 27 KSLEILLK--DDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHES--HAKVMMYRKEQYLDVLHALKV------- 95 (294)
T ss_dssp HHHHHHTT--SSBCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGG--HHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHhc--CCCCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchh--HHHHHHHHHHHHHHHHHhhhh-------
Confidence 45666664 4689999999988777799999999999999999998765 688889999999999986322
Q ss_pred hhhhhccccccccccccccCCCCccccCCCChhhHHHHH--HHHhhhhhcCCCCcccchhHHHHHHHHhcCCHHHHHHHH
Q 006618 392 RFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRD--ILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCF 469 (638)
Q Consensus 392 ~~~~~~e~~~~I~kDV~RT~~~~~~f~~~~~~~~~~L~~--IL~~y~~~npdiGY~QGM~dl~a~Ll~v~~dE~~aFw~f 469 (638)
.++|+.+.++. ..|... . .+.+ ...+| -.+++ .++|||++|+++++.++.+|++|||||
T Consensus 96 --------~r~I~~~tP~~----~vfl~~---~--~~~~~~l~~~~-~~~~~-~~~~~~~~Iaa~ll~l~~~E~dAFW~f 156 (294)
T 3qwl_A 96 --------VRFVSDATPQA----EVYLRM---Y--QLESGKLPRSP-SFPLE-PDDEVFLAIAKAMEEMVEDSVDCYWIT 156 (294)
T ss_dssp --------TTSCCTTSCHH----HHHHHH---H--HHHHTCCCSST-TSCCC-HHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred --------hhhhhccCchH----HHHHHH---H--Hcccccccccc-cCCcc-cchhhHHHHHHHHHHHhCCHHHHHHHH
Confidence 24555433221 011100 0 0000 01111 11233 245999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCcchhhHHHHHHHHHHHhhCHHHHHHHHHCCCCchhhhHHHHHHhcCcCCChhhHHHHHHHHHhhcC
Q 006618 470 VALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYL 549 (638)
Q Consensus 470 ~~lm~~~~~~f~~~~~gm~~~~~~l~~Ll~~~dP~L~~hL~~~~i~~~~f~~rWfl~lF~ref~~~~vlrLWD~~~~~~~ 549 (638)
++||+++..+|..+++|++.. ++.|++.+||+||+||++.|+.+.+++.+||+++|+++||+++++||||++|++
T Consensus 157 ~~Lm~~l~~~f~~~~~gl~~~---l~~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~~~-- 231 (294)
T 3qwl_A 157 RRFVNQLNTKYRDSLPQLPKA---FEQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSG-- 231 (294)
T ss_dssp HHHHHHHHTTTTTTGGGHHHH---HHHHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHhhCCChhHHHHH---HHHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHhC--
Confidence 999999999999999999876 489999999999999999999887777799999999999999999999999986
Q ss_pred ChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Q 006618 550 SEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGE 608 (638)
Q Consensus 550 ~~~fll~valAiL~~~r~~Ll~~~~dfdeilk~l~~l~~~~d~~~lL~~A~~L~~~~~e 608 (638)
+.+|++++|+|||+.+++.||+.. .+++|+++|+++| ..|++.++.+|..|+.+...
T Consensus 232 ~~~~l~~valAiL~~~r~~Ll~~~-~~~~il~~Lq~lp-~~di~~ll~~A~~l~~~~~~ 288 (294)
T 3qwl_A 232 SCKILVFVAVEILLTFKIKVMALN-SAEKITKFLENIP-QDSSDAIVSKAIDLWHKHCG 288 (294)
T ss_dssp CSTHHHHHHHHHHHHTHHHHHHCC-SHHHHHHHHTTCC-STTHHHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHcCC-cccHHHHHHHHHHHHHHcCC
Confidence 778999999999999999999764 5599999999998 77999999999999988765
No 8
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=95.87 E-value=0.02 Score=52.47 Aligned_cols=102 Identities=12% Similarity=0.141 Sum_probs=76.0
Q ss_pred EEEEeeCceEEccCCcc-cccccceEEEEeeCCceeEEeEecCCCCCCccccccccCcceeeeeeCCCeeEEEEecCCCC
Q 006618 44 ELVYLKDNVTIHPTQFA-SERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFG 122 (638)
Q Consensus 44 ~llf~Ks~V~vhpt~~~-~~~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~y~~~~v~ls~I~sI~~~~p~~g 122 (638)
.+||..++|-++....+ ...-.|.|.|+ .-.|-|+|... .. ...+++||+.|..+...+|..|
T Consensus 30 ~il~~~d~V~Ly~g~~k~~~~k~G~lyLT----shRIIyv~~~~-----------~~-~~SfslPL~~v~~~e~~~~~fg 93 (145)
T 2cay_A 30 KDIFIDQSVGLYHGKSKILQRQRGRIFLT----SQRIIYIDDAK-----------PT-QNSLGLELDDLAYVNYSSGFLT 93 (145)
T ss_dssp CEEEEEEEEEEEETTEECTTCSSEEEEEE----SSEEEEEESSC-----------HH-HHCEEEEGGGEEEEEEECSSSS
T ss_pred EEEEEcCCcceecCCCCCcCCCccEEEEE----cCeEEEecCCC-----------Cc-ceEEEeEhHheeeeeEEcCccc
Confidence 67888889999887644 45677888887 34688987432 11 1348999999999999999887
Q ss_pred ceE-EEEEeCC---CCcCCceEeecCChHHHHHHHHhcccccc
Q 006618 123 WQY-IIVVLSS---GLAFPPLYFYTGGVREFLATIKQHVLLVR 161 (638)
Q Consensus 123 ~~~-~il~~~d---G~~~P~L~F~~GG~~~fl~~L~~~~~l~r 161 (638)
+.. |++..+. |...--|-|..||..+|.+.|.+-+.-.+
T Consensus 94 ~s~Ki~l~~~p~~~~~~~~KLsFk~GGa~eF~~~l~~al~~~~ 136 (145)
T 2cay_A 94 RSPRLILFFKDPSSSTEFVQLSFRKSDGVLFSQATERALENIL 136 (145)
T ss_dssp SSCEEEEEESSCSSTTCCEEEEESSSCCHHHHHHHHHHHHHHH
T ss_pred cCceEEEEecCCCCCceEEEEEEcCCCchHHHHHHHHHHHHHH
Confidence 654 6677753 45577899999999999999987544433
No 9
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=94.91 E-value=0.17 Score=45.85 Aligned_cols=95 Identities=21% Similarity=0.253 Sum_probs=72.3
Q ss_pred EEEEeeCceEEccCCcccccccceEEEEeeCCceeEEeEecCCCCCCccccccccCcceeeeeeCCCeeEEEEecCCCCc
Q 006618 44 ELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGW 123 (638)
Q Consensus 44 ~llf~Ks~V~vhpt~~~~~~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~y~~~~v~ls~I~sI~~~~p~~g~ 123 (638)
.+|+..++|-++..+.+...-.|.|.|+ .-.|-|+.... . . ..+++||+.|.++...+|.+|-
T Consensus 18 ~il~~~~~V~Ly~g~~k~~~k~G~l~LT----shRli~~d~~~-~----------~--~s~~lpl~~v~~~e~~~~~f~~ 80 (140)
T 2hth_B 18 TLVIQQRGVRIYDGEEKIKFDAGTLLLS----THRLIWRDQKN-H----------E--CCMAILLSQIVFIEEQAAGIGK 80 (140)
T ss_dssp CEEEEEEEEEEEETTCSSCCCCEEEEEE----SSEEEEEETTC-C----------S--CCEEEEGGGEEEEEEECCTTSS
T ss_pred eEEEEcCCEEEecCCCCCCCcCCEEEEe----cCEEEEecCCC-C----------c--eEEEEEhHHeeeeeeecccccc
Confidence 5788889999987765556688888887 44688876433 1 1 2478999999999999997653
Q ss_pred -eEEEEEeCC-------------CCcCCceEeecCChHHHHHHHHh
Q 006618 124 -QYIIVVLSS-------------GLAFPPLYFYTGGVREFLATIKQ 155 (638)
Q Consensus 124 -~~~il~~~d-------------G~~~P~L~F~~GG~~~fl~~L~~ 155 (638)
.-|++.++. |...--|-|+.||..+|...|.+
T Consensus 81 s~Ki~l~l~~~~~~~~~gp~~~s~~~~~kLsFr~Gg~~eF~~~L~~ 126 (140)
T 2hth_B 81 SAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEFYRRLSE 126 (140)
T ss_dssp CCEEEEEECCCCCCSSSCCCSTTSCCEEEEEETTSCHHHHHHHHHH
T ss_pred CceEEEEecCCCccCCCCCcccccCcEEEEEEcCCCChHHHHHHHH
Confidence 357777764 23345799999999999999976
No 10
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=89.90 E-value=0.98 Score=38.82 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=47.9
Q ss_pred ceEEEEeeCCceeEEeEecCCCCCCccccccccCcceeeeeeCCCeeEEEEecCCCCceEEEEEeCCCCcCCceEeecCC
Q 006618 66 GRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGG 145 (638)
Q Consensus 66 G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~y~~~~v~ls~I~sI~~~~p~~g~~~~il~~~dG~~~P~L~F~~GG 145 (638)
|.|.|..+ .|+|+|+.. +. ...++++++|...++.|++.--=-+-|++++|.++ .++|-+++
T Consensus 22 GtL~l~~d----~i~W~p~~~-~~------------~~vs~~~~~I~~qq~SP~~k~KVqLqi~l~~~~~~-~F~Ftn~~ 83 (108)
T 1pfj_A 22 GALYLMAE----RIAWAPEGK-DR------------FTISHMYADIKCQKISPEGKAKIQLQLVLHAGDTT-NFHFSNES 83 (108)
T ss_dssp CEEEEETT----EEEEECSSS-SS------------CSEEEETTTCCCEEECCSSSSSCEEEEECSSSCEE-EEECCCSS
T ss_pred ceEEEEcc----eEEEccCCC-CC------------ceEEEehhhhhcceeCCCCCccEEEEEEEeCCCce-EEEEcCcH
Confidence 99999866 999999544 21 12356799999999999865544578899998777 89998875
No 11
>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens}
Probab=38.84 E-value=2e+02 Score=30.39 Aligned_cols=103 Identities=11% Similarity=0.136 Sum_probs=56.9
Q ss_pred CCcEEEEeeCceEEccCCcccccccceEEEEee-CCceeEEeEecCCCCCCccccccccCcceeeeeeCCCeeEEEEecC
Q 006618 41 EGAELVYLKDNVTIHPTQFASERISGRLKLIKQ-GSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTP 119 (638)
Q Consensus 41 ~~~~llf~Ks~V~vhpt~~~~~~I~G~L~l~~~-~~~~~l~W~P~~~~~~~~~~~~~d~~~y~~~~v~ls~I~sI~~~~p 119 (638)
++.-|=|-=.++-+-.+...-+.-+|+|.|.+. ++-+.+.|.|-.... .+- .+-|-=.|..-.++.+.
T Consensus 24 ~~~lveFkAGk~~~~g~~V~Pd~rKG~l~l~~~ed~l~hf~W~~R~~~~-------~Ed----dlii~P~d~~f~~V~~c 92 (411)
T 2kr0_A 24 NKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGN-------VED----DLIIFPDDCEFKRVPQC 92 (411)
T ss_dssp CSCSEEECEEEEEESSSSEEECCSCEEEEEEECTTSCEEEEEEESSSCC-------EEE----EEEECTTSEEEEECTTC
T ss_pred CceeEEEeCceEEecCCEEeecCCCcEEEEEeCCCCcEEEEEecCCCCC-------ccc----ceEEcCCceEEEECCCC
Confidence 344444533333333333344678999999984 567889999954211 011 12222267777777666
Q ss_pred CCCceEEEEEeCCCCcCCceEeecC----Ch--HHHHHHHHhccc
Q 006618 120 AFGWQYIIVVLSSGLAFPPLYFYTG----GV--REFLATIKQHVL 158 (638)
Q Consensus 120 ~~g~~~~il~~~dG~~~P~L~F~~G----G~--~~fl~~L~~~~~ 158 (638)
+.|.=|+ |.-+++. .-||+|= +. .++.+.+..++.
T Consensus 93 ~tGRVyv-LkF~ss~---~r~fFWmQe~~~~~D~~~~~~vN~ll~ 133 (411)
T 2kr0_A 93 PSGRVYV-LKFKAGS---KRLFFWMQEPKTDQDEEHCRKVNEYLN 133 (411)
T ss_dssp SSSCEEE-EEETTTC---CEEEEEECCSCGGGHHHHHHHHHHHHH
T ss_pred CCCeEEE-EEecCCC---ceeEEEecCCCcccHHHHHHHHHHHHh
Confidence 6775554 3334433 2455442 22 478888877655
No 12
>1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit; TFIIH, PH domain, phosphoinositides, VP16; NMR {Saccharomyces cerevisiae} SCOP: b.55.1.9 PDB: 2gs0_A 2k2u_A 2l2i_A 2lox_A*
Probab=24.85 E-value=2.5e+02 Score=24.04 Aligned_cols=55 Identities=13% Similarity=0.279 Sum_probs=39.8
Q ss_pred cccceEEEEeeCCceeEEeEecCCCCCCccccccccCcceeeeeeCCCeeEEEEecCCCCceEEEEEeC
Q 006618 63 RISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLS 131 (638)
Q Consensus 63 ~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~y~~~~v~ls~I~sI~~~~p~~g~~~~il~~~ 131 (638)
-..|.|.|.+...=..|.|+|-.+ +. ..+|+|+.|..++--+.+..-=-+-|+.+
T Consensus 11 Kk~G~lti~eD~~p~~l~W~p~~g-~~-------------~isI~l~~It~LQqTp~ts~KvmLKI~~k 65 (115)
T 1y5o_A 11 KVSGIIAINEDVSPAELTWRSTDG-DK-------------VHTVVLSTIDKLQATPASSEKMMLRLIGK 65 (115)
T ss_dssp SCEEEEEEECSSSSCEEEEEESSS-SC-------------EEEEESTTCSEEEECCTTCSSEEEEEEEC
T ss_pred ecccEEEEccCCCcceEEEEECCC-Cc-------------cEEEEhhhhhhhhcCCCCCCceEEEEEEe
Confidence 467999999888888999999555 21 36899999999986555544334545555
No 13
>2r2y_A Protein ADRM1; proteasome, ubiquitin, PH-domain, 19S regulator, receptor, U proteasome-degradation pathway; 1.70A {Mus musculus} PDB: 2z59_A
Probab=23.14 E-value=4.1e+02 Score=23.89 Aligned_cols=67 Identities=12% Similarity=0.160 Sum_probs=38.5
Q ss_pred cCCcccccccceEEEEee-CCceeEEeEecCCCCCCccccccccCcceeeeeeCCCeeEEEEecCCCCceEEEEEeCCCC
Q 006618 56 PTQFASERISGRLKLIKQ-GSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGL 134 (638)
Q Consensus 56 pt~~~~~~I~G~L~l~~~-~~~~~l~W~P~~~~~~~~~~~~~d~~~y~~~~v~ls~I~sI~~~~p~~g~~~~il~~~dG~ 134 (638)
++.-..+.-+|+|.|.+. ++-+-+.|.|-..... +- .+-|.=.|..-.++.+.+.|.=|+ |.-+++.
T Consensus 38 g~~V~Pd~rKG~l~l~~~ed~l~hf~W~~R~t~~v-------Ed----DlIi~P~d~~F~kV~~c~tGRVyv-LkF~ss~ 105 (153)
T 2r2y_A 38 GTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTV-------ED----DLIIFPDDCEFKRVPQCPSGRVYV-LKFKAGS 105 (153)
T ss_dssp TTEEEECCSCEEEEEEECTTSCEEEEEEETTTCCE-------EE----EEECCTTSEEEEECTTCTTSCEEE-EEETTTC
T ss_pred CCEEeECCCCEEEEEEECCCCcEEEEEecCCCCCc-------cc----eEEEcCCCeEEEECCCCCCCeEEE-EEecCCC
Confidence 333344667999999985 5678899999642210 10 122222666666666656775554 3334433
Done!