BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006619
(638 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=4 SV=1
Length = 271
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 86/201 (42%), Gaps = 41/201 (20%)
Query: 422 SETCSNCGKENHTAATCKMQKQNKP-----CFLCGSFKHRWKNCK--------QGQDCFI 468
S TC CG+E H + C + ++ CF CG H ++C +G +C+
Sbjct: 42 STTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYK 101
Query: 469 NKGSEHLASDCPGTD----------------QGNNLSSNFCLRCGDSGH---DLSSCEGE 509
HL+ DCP + QG C +CGD+GH D + +G
Sbjct: 102 CGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGG 161
Query: 510 YHADDLKKIQCYICKSFGHLC--CVNS--SIIGLKQVSCYNCGQSGHLGPECANSCEALN 565
Y + CY C GH+ C N G CY CG+SGH+ EC ++ +
Sbjct: 162 YSGAGDR--TCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSAGSTGS 219
Query: 566 GKKSNLICYKCGKEGHFARRC 586
G ++ CYKCGK GH +R C
Sbjct: 220 GDRA---CYKCGKPGHISREC 237
Score = 66.6 bits (161), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 80/203 (39%), Gaps = 42/203 (20%)
Query: 421 NSETCSNCGKENHTAATC-----KMQKQNKPCFLCGSFKHRWKNCKQ--------GQDCF 467
+S +C NCGKE H A C K +++ CF CG H + C CF
Sbjct: 14 SSTSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCF 73
Query: 468 INKGSEHLASDCPGTDQGNNLSSNFCLRCGDSGHDLSSC--------------------E 507
+ H++ DCP + + C +CG GH C +
Sbjct: 74 RCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQ 133
Query: 508 GEYHADDLKKIQCYICKSFGHLC--CVNS--SIIGLKQVSCYNCGQSGHLGPECANSCEA 563
G Y D CY C GH+ C N G +CY CG +GH+ +C N
Sbjct: 134 GGYSGDRT----CYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGG 189
Query: 564 LNGKKSNLICYKCGKEGHFARRC 586
+G + CYKCG+ GH +R C
Sbjct: 190 YSGA-GDRKCYKCGESGHMSREC 211
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 84/205 (40%), Gaps = 43/205 (20%)
Query: 424 TCSNCGKENHTAATCKMQKQNKP-------CFLCGSFKHRWKNCKQGQD----------- 465
TC CG+ H + C KP C+ CG H ++C Q
Sbjct: 71 TCFRCGEAGHMSRDCP--NSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRG 128
Query: 466 -------------CFINKGSEHLASDCPGTDQGNNLSSN-FCLRCGDSGH---DLSSCEG 508
C+ + H++ DCP G + + + C +CGD+GH D + +G
Sbjct: 129 RSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQG 188
Query: 509 EYHADDLKKIQCYICKSFGHLC--CVNSSIIGLKQVSCYNCGQSGHLGPEC--ANSCEAL 564
Y +K CY C GH+ C ++ G +CY CG+ GH+ EC A
Sbjct: 189 GYSGAGDRK--CYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISRECPEAGGSYGG 246
Query: 565 NGKKSNLICYKCGKEGHFARRCGSN 589
+ + CYKCG+ GH +R C S+
Sbjct: 247 SRGGGDRTCYKCGEAGHISRDCPSS 271
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 489 SSNFCLRCGDSGHDLSSCEGEYHADDLKKIQCYICKSFGHLC--CVNSSIIGLK-QVSCY 545
SS C CG GH C D + C+ C GH+ C N + G ++C+
Sbjct: 14 SSTSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCF 73
Query: 546 NCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCGSN 589
CG++GH+ +C NS A G CYKCG+EGH +R C S+
Sbjct: 74 RCGEAGHMSRDCPNS--AKPGAAKGFECYKCGQEGHLSRDCPSS 115
>sp|O65639|CSP1_ARATH Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=2 SV=1
Length = 299
Score = 67.0 bits (162), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 74/181 (40%), Gaps = 34/181 (18%)
Query: 425 CSNCGKENHTAATC----------KMQKQNKPCFLCGSFKHRWKNCKQGQDCFINKGSEH 474
C NCG H A C + N C+ CG H ++C Q + G +
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKS---VGNGDQR 190
Query: 475 LASDCPGTDQGNNLSSNFCLRCGDSGHDLSSCEGEYHADDLKKI-----QCYICKSFGHL 529
G +G N + C CGD GH C + A +++ CY C GH
Sbjct: 191 ------GAVKGGN---DGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGH- 240
Query: 530 CCVNSSIIGLKQVS--CYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCG 587
+ +Q S CY CG SGHL +C G ++ CYKCGKEGHFAR C
Sbjct: 241 --IARDCATKRQPSRGCYQCGGSGHLARDCDQ--RGSGGGGNDNACYKCGKEGHFARECS 296
Query: 588 S 588
S
Sbjct: 297 S 297
>sp|O42395|CNBP_CHICK Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2
SV=1
Length = 172
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 72/164 (43%), Gaps = 43/164 (26%)
Query: 423 ETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQGQDCFINKGSEHLASDCPGT 482
+ C CG+ H A C +Q ++K C+ CG H K+CK+ P
Sbjct: 46 DICYRCGESGHLAKDCDLQ-EDKACYNCGRGGHIAKDCKE-----------------PKR 87
Query: 483 DQGNNLSSNFCLRCGDSGHDLSSCEGEYHADDLKKIQCYICKSFGHLCCVNSSIIGLKQV 542
++ C CG GH C+ HAD+ K CY C FGH+ +V
Sbjct: 88 ER-----EQCCYNCGKPGHLARDCD---HADEQK---CYSCGEFGHI------QKDCTKV 130
Query: 543 SCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRC 586
CY CG++GH+ C+ K S + CY+CG+ GH AR C
Sbjct: 131 KCYRCGETGHVAINCS--------KTSEVNCYRCGESGHLAREC 166
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 51/116 (43%), Gaps = 27/116 (23%)
Query: 488 LSSNFCLRCGDSGHDLSSCEG----------------EYHADDLKKIQCYICKSFGHLCC 531
+SSN C +CG +GH C ++ + L I CY C GHL
Sbjct: 1 MSSNECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDI-CYRCGESGHL-- 57
Query: 532 VNSSIIGLKQ-VSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRC 586
+ L++ +CYNCG+ GH+ +C ++ CY CGK GH AR C
Sbjct: 58 --AKDCDLQEDKACYNCGRGGHIAKDCKEP-----KREREQCCYNCGKPGHLARDC 106
>sp|P36627|BYR3_SCHPO Cellular nucleic acid-binding protein homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=byr3 PE=4 SV=1
Length = 179
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 73/173 (42%), Gaps = 26/173 (15%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQGQD---CFINKGSEHLASDCPG 481
C NCG+ H A C + C+ C H+ C + Q C+ + HL DCP
Sbjct: 19 CYNCGENGHQAREC---TKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPS 75
Query: 482 TDQGNNLSSNFCLRCGDSGHDLSSC------EGEYHADDLKKIQCYICKSFGHLCCVNSS 535
+ N C +CG GH C G + CY C S+GH
Sbjct: 76 SP--NPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQ--ARDC 131
Query: 536 IIGLKQVSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCGS 588
+G+K CY+CG+ GH EC +A +G+ +CYKC + GH A C S
Sbjct: 132 TMGVK---CYSCGKIGHRSFECQ---QASDGQ----LCYKCNQPGHIAVNCTS 174
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 14/97 (14%)
Query: 493 CLRCGDSGHDLSSCEGEYHADDLKKIQCYICKSFGHLCCVNSSIIGLKQVSCYNCGQSGH 552
C CG++GH C K CY C GH + ++ +CY CG +GH
Sbjct: 19 CYNCGENGHQAREC--------TKGSICYNCNQTGHK--ASECTEPQQEKTCYACGTAGH 68
Query: 553 LGPECANSCEALNGKKSNLICYKCGKEGHFARRCGSN 589
L +C +S G + CYKCG+ GH AR C +N
Sbjct: 69 LVRDCPSSPNPRQGAE----CYKCGRVGHIARDCRTN 101
>sp|P62634|CNBP_RAT Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp
PE=2 SV=1
Length = 177
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 64/141 (45%), Gaps = 24/141 (17%)
Query: 447 CFLCGSFKHRWKNCKQGQDCFINKG-SEHLASDCPGTDQGNNLSSNFCLRCGDSGHDLSS 505
C+ CG H K+C +D N G H+A DC + C CG GH
Sbjct: 54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCK---EPKREREQCCYNCGKPGHLARD 110
Query: 506 CEGEYHADDLKKIQCYICKSFGHLCCVNSSIIGLKQVSCYNCGQSGHLGPECANSCEALN 565
C+ HAD+ K CY C FGH+ +V CY CG++GH+ C+
Sbjct: 111 CD---HADEQK---CYSCGEFGHI------QKDCTKVKCYRCGETGHVAINCS------- 151
Query: 566 GKKSNLICYKCGKEGHFARRC 586
K S + CY+CG+ GH AR C
Sbjct: 152 -KTSEVNCYRCGESGHLAREC 171
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 65/140 (46%), Gaps = 25/140 (17%)
Query: 423 ETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQG----QDCFINKGSE-HLAS 477
+ C CG+ H A C +Q+ C+ CG H K+CK+ + C N G HLA
Sbjct: 52 DICYRCGESGHLAKDCDLQED--ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLAR 109
Query: 478 DCPGTDQGNNLSSNFCLRCGDSGHDLSSCEGEYHADDLKKIQCYICKSFGHLCCVNSSII 537
DC D+ C CG+ GH D K++CY C GH+ +N S
Sbjct: 110 DCDHADEQK------CYSCGEFGHI---------QKDCTKVKCYRCGETGHVA-INCSKT 153
Query: 538 GLKQVSCYNCGQSGHLGPEC 557
+V+CY CG+SGHL EC
Sbjct: 154 --SEVNCYRCGESGHLAREC 171
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 51/121 (42%), Gaps = 32/121 (26%)
Query: 488 LSSNFCLRCGDSGHDLSSCEG----------------------EYHADDLKKIQCYICKS 525
+SSN C +CG SGH C ++ + L I CY C
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDI-CYRCGE 59
Query: 526 FGHLCCVNSSIIGLKQVSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARR 585
GHL + L++ +CYNCG+ GH+ +C ++ CY CGK GH AR
Sbjct: 60 SGHL----AKDCDLQEDACYNCGRGGHIAKDCKEP-----KREREQCCYNCGKPGHLARD 110
Query: 586 C 586
C
Sbjct: 111 C 111
>sp|Q5R5R5|CNBP_PONAB Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2
SV=1
Length = 177
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 64/141 (45%), Gaps = 24/141 (17%)
Query: 447 CFLCGSFKHRWKNCKQGQDCFINKG-SEHLASDCPGTDQGNNLSSNFCLRCGDSGHDLSS 505
C+ CG H K+C +D N G H+A DC + C CG GH
Sbjct: 54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCK---EPKREREQCCYNCGKPGHLARD 110
Query: 506 CEGEYHADDLKKIQCYICKSFGHLCCVNSSIIGLKQVSCYNCGQSGHLGPECANSCEALN 565
C+ HAD+ K CY C FGH+ +V CY CG++GH+ C+
Sbjct: 111 CD---HADEQK---CYSCGEFGHI------QKDCTKVKCYRCGETGHVAINCS------- 151
Query: 566 GKKSNLICYKCGKEGHFARRC 586
K S + CY+CG+ GH AR C
Sbjct: 152 -KTSEVNCYRCGESGHLAREC 171
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 65/140 (46%), Gaps = 25/140 (17%)
Query: 423 ETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQG----QDCFINKGSE-HLAS 477
+ C CG+ H A C +Q+ C+ CG H K+CK+ + C N G HLA
Sbjct: 52 DICYRCGESGHLAKDCDLQED--ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLAR 109
Query: 478 DCPGTDQGNNLSSNFCLRCGDSGHDLSSCEGEYHADDLKKIQCYICKSFGHLCCVNSSII 537
DC D+ C CG+ GH D K++CY C GH+ +N S
Sbjct: 110 DCDHADEQK------CYSCGEFGHI---------QKDCTKVKCYRCGETGHVA-INCSKT 153
Query: 538 GLKQVSCYNCGQSGHLGPEC 557
+V+CY CG+SGHL EC
Sbjct: 154 --SEVNCYRCGESGHLAREC 171
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 51/121 (42%), Gaps = 32/121 (26%)
Query: 488 LSSNFCLRCGDSGHDLSSCEG----------------------EYHADDLKKIQCYICKS 525
+SSN C +CG SGH C ++ + L I CY C
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDI-CYRCGE 59
Query: 526 FGHLCCVNSSIIGLKQVSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARR 585
GHL + L++ +CYNCG+ GH+ +C ++ CY CGK GH AR
Sbjct: 60 SGHL----AKDCDLQEDACYNCGRGGHIAKDCKEP-----KREREQCCYNCGKPGHLARD 110
Query: 586 C 586
C
Sbjct: 111 C 111
>sp|P62633|CNBP_HUMAN Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1
SV=1
Length = 177
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 64/141 (45%), Gaps = 24/141 (17%)
Query: 447 CFLCGSFKHRWKNCKQGQDCFINKG-SEHLASDCPGTDQGNNLSSNFCLRCGDSGHDLSS 505
C+ CG H K+C +D N G H+A DC + C CG GH
Sbjct: 54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCK---EPKREREQCCYNCGKPGHLARD 110
Query: 506 CEGEYHADDLKKIQCYICKSFGHLCCVNSSIIGLKQVSCYNCGQSGHLGPECANSCEALN 565
C+ HAD+ K CY C FGH+ +V CY CG++GH+ C+
Sbjct: 111 CD---HADEQK---CYSCGEFGHI------QKDCTKVKCYRCGETGHVAINCS------- 151
Query: 566 GKKSNLICYKCGKEGHFARRC 586
K S + CY+CG+ GH AR C
Sbjct: 152 -KTSEVNCYRCGESGHLAREC 171
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 65/140 (46%), Gaps = 25/140 (17%)
Query: 423 ETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQG----QDCFINKGSE-HLAS 477
+ C CG+ H A C +Q+ C+ CG H K+CK+ + C N G HLA
Sbjct: 52 DICYRCGESGHLAKDCDLQED--ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLAR 109
Query: 478 DCPGTDQGNNLSSNFCLRCGDSGHDLSSCEGEYHADDLKKIQCYICKSFGHLCCVNSSII 537
DC D+ C CG+ GH D K++CY C GH+ +N S
Sbjct: 110 DCDHADEQK------CYSCGEFGHI---------QKDCTKVKCYRCGETGHVA-INCSKT 153
Query: 538 GLKQVSCYNCGQSGHLGPEC 557
+V+CY CG+SGHL EC
Sbjct: 154 --SEVNCYRCGESGHLAREC 171
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 51/121 (42%), Gaps = 32/121 (26%)
Query: 488 LSSNFCLRCGDSGHDLSSCEG----------------------EYHADDLKKIQCYICKS 525
+SSN C +CG SGH C ++ + L I CY C
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDI-CYRCGE 59
Query: 526 FGHLCCVNSSIIGLKQVSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARR 585
GHL + L++ +CYNCG+ GH+ +C ++ CY CGK GH AR
Sbjct: 60 SGHL----AKDCDLQEDACYNCGRGGHIAKDCKEP-----KREREQCCYNCGKPGHLARD 110
Query: 586 C 586
C
Sbjct: 111 C 111
>sp|P53996|CNBP_MOUSE Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=2
SV=2
Length = 178
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 72/164 (43%), Gaps = 43/164 (26%)
Query: 423 ETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQGQDCFINKGSEHLASDCPGT 482
+ C CG+ H A C +Q +++ C+ CG H K+CK+ P
Sbjct: 52 DICYRCGESGHLAKDCDLQ-EDEACYNCGRGGHIAKDCKE-----------------PKR 93
Query: 483 DQGNNLSSNFCLRCGDSGHDLSSCEGEYHADDLKKIQCYICKSFGHLCCVNSSIIGLKQV 542
++ C CG GH C+ HAD+ K CY C FGH+ +V
Sbjct: 94 ER-----EQCCYNCGKPGHLARDCD---HADEQK---CYSCGEFGHI------QKDCTKV 136
Query: 543 SCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRC 586
CY CG++GH+ C+ K S + CY+CG+ GH AR C
Sbjct: 137 KCYRCGETGHVAINCS--------KTSEVNCYRCGESGHLAREC 172
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 395 KENEAKYNVVLRMLLRKPRYFDPPGWNSETCSNCGKENHTAATCKMQKQNKPCFLCGSFK 454
+E+EA YN + K +P + C NCGK H A C + K C+ CG F
Sbjct: 70 QEDEACYNCGRGGHIAKDCK-EPKREREQCCYNCGKPGHLARDCDHADEQK-CYSCGEFG 127
Query: 455 HRWKNCKQGQDCFINKGSEHLASDCPGTDQGNNLSSNFCLRCGDSGH 501
H K+C + + C+ + H+A +C T + N C RCG+SGH
Sbjct: 128 HIQKDCTKVK-CYRCGETGHVAINCSKTSEVN------CYRCGESGH 167
Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 51/122 (41%), Gaps = 33/122 (27%)
Query: 488 LSSNFCLRCGDSGHDLSSCEG----------------------EYHADDLKKIQCYICKS 525
+SSN C +CG SGH C ++ + L I CY C
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDI-CYRCGE 59
Query: 526 FGHLCCVNSSIIGLKQ-VSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFAR 584
GHL + L++ +CYNCG+ GH+ +C ++ CY CGK GH AR
Sbjct: 60 SGHL----AKDCDLQEDEACYNCGRGGHIAKDCKEP-----KREREQCCYNCGKPGHLAR 110
Query: 585 RC 586
C
Sbjct: 111 DC 112
Score = 33.9 bits (76), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 544 CYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCGSNFKDRLRISDLLFTA 603
CY CG+SGHL +C + + CY CG+ GH A+ C ++R +
Sbjct: 54 CYRCGESGHLAKDC--------DLQEDEACYNCGRGGHIAKDCKEPKRER---EQCCYNC 102
Query: 604 ERPPTRAR 611
+P AR
Sbjct: 103 GKPGHLAR 110
>sp|Q3T0Q6|CNBP_BOVIN Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2
SV=1
Length = 170
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 64/141 (45%), Gaps = 24/141 (17%)
Query: 447 CFLCGSFKHRWKNCKQGQDCFINKG-SEHLASDCPGTDQGNNLSSNFCLRCGDSGHDLSS 505
C+ CG H K+C +D N G H+A DC + C CG GH
Sbjct: 47 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDC---KEPKREREQCCYNCGKPGHLARD 103
Query: 506 CEGEYHADDLKKIQCYICKSFGHLCCVNSSIIGLKQVSCYNCGQSGHLGPECANSCEALN 565
C+ HAD+ K CY C FGH+ +V CY CG++GH+ C+
Sbjct: 104 CD---HADEQK---CYSCGEFGHI------QKDCTKVKCYRCGETGHVAINCS------- 144
Query: 566 GKKSNLICYKCGKEGHFARRC 586
K S + CY+CG+ GH AR C
Sbjct: 145 -KTSEVNCYRCGESGHLAREC 164
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 65/140 (46%), Gaps = 25/140 (17%)
Query: 423 ETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQG----QDCFINKGSE-HLAS 477
+ C CG+ H A C +Q+ C+ CG H K+CK+ + C N G HLA
Sbjct: 45 DICYRCGESGHLAKDCDLQED--ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLAR 102
Query: 478 DCPGTDQGNNLSSNFCLRCGDSGHDLSSCEGEYHADDLKKIQCYICKSFGHLCCVNSSII 537
DC D+ C CG+ GH D K++CY C GH+ +N S
Sbjct: 103 DCDHADEQK------CYSCGEFGHI---------QKDCTKVKCYRCGETGHVA-INCSKT 146
Query: 538 GLKQVSCYNCGQSGHLGPEC 557
+V+CY CG+SGHL EC
Sbjct: 147 --SEVNCYRCGESGHLAREC 164
Score = 49.3 bits (116), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 51/114 (44%), Gaps = 25/114 (21%)
Query: 488 LSSNFCLRCGDSGHDLSSCEG---------------EYHADDLKKIQCYICKSFGHLCCV 532
+SSN C +CG SGH C ++ + L I CY C GHL
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDI-CYRCGESGHL--- 56
Query: 533 NSSIIGLKQVSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRC 586
+ L++ +CYNCG+ GH+ +C ++ CY CGK GH AR C
Sbjct: 57 -AKDCDLQEDACYNCGRGGHIAKDCKEP-----KREREQCCYNCGKPGHLARDC 104
>sp|P53849|GIS2_YEAST Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GIS2 PE=1 SV=1
Length = 153
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 63/164 (38%), Gaps = 40/164 (24%)
Query: 425 CSNCGKENHTAATCKMQK--QNKPCFLCGSFKHRWKNCKQGQDCFINKGSEHLASDCPGT 482
C NC K H C M + + K C+ CG H C Q CF + H++ +CP
Sbjct: 25 CYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECTV-QRCFNCNQTGHISRECPEP 83
Query: 483 DQGNNLSSNFCLRCGDSGHDLSSCEGEYHADDLKKIQCYICKSFGHLCCVNSSIIGLKQV 542
+ + S C +CG H C E I GLK
Sbjct: 84 KKTSRFSKVSCYKCGGPNHMAKDCMKE------------------------DGISGLK-- 117
Query: 543 SCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRC 586
CY CGQ+GH+ +C N + +CY C + GH ++ C
Sbjct: 118 -CYTCGQAGHMSRDCQN----------DRLCYNCNETGHISKDC 150
Score = 38.1 bits (87), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 46/117 (39%), Gaps = 28/117 (23%)
Query: 488 LSSNFCLRCGDSGHDLSSCEGEYHADDLKKIQCYICKSFGHLC--CVNSSIIGLKQVSCY 545
+S C CG GH C+ E CY C GH+ C + KQ CY
Sbjct: 1 MSQKACYVCGKIGHLAEDCDSER--------LCYNCNKPGHVQTDCTMPRTVEFKQ--CY 50
Query: 546 NCGQSGHLGPEC-ANSCEALN---------------GKKSNLICYKCGKEGHFARRC 586
NCG++GH+ EC C N + S + CYKCG H A+ C
Sbjct: 51 NCGETGHVRSECTVQRCFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDC 107
>sp|Q8T8R1|Y3800_DROME CCHC-type zinc finger protein CG3800 OS=Drosophila melanogaster
GN=CG3800 PE=1 SV=1
Length = 165
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 11/119 (9%)
Query: 440 MQKQNKPCFLCGSFKHRWKNC-KQGQDCFINKGSEHLASDCPGTDQGNNLSSNFCLRCGD 498
M++ + C+ C F H + C ++ + C+ G H++ DC Q +N + C RC
Sbjct: 50 MRRNREKCYKCNQFGHFARACPEEAERCYRCNGIGHISKDC---TQADNPT---CYRCNK 103
Query: 499 SGHDLSSCEGEYHADDLKKIQCYICKSFGHLCCVNSSIIGLKQVSCYNCGQSGHLGPEC 557
+GH + +C + + CY C GH+ S +CY CG+SGHL EC
Sbjct: 104 TGHWVRNCPEAVNERGPTNVSCYKCNRTGHI----SKNCPETSKTCYGCGKSGHLRREC 158
Score = 38.1 bits (87), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 12/106 (11%)
Query: 519 QCYICKSFGHLCCVNSSIIGLKQVSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGK 578
+CY C FGH + + CY C GH+ +C + N CY+C K
Sbjct: 56 KCYKCNQFGHF----ARACPEEAERCYRCNGIGHISKDCTQA--------DNPTCYRCNK 103
Query: 579 EGHFARRCGSNFKDRLRISDLLFTAERPPTRARHFVGSNGTPHGLG 624
GH+ R C +R + + R +++ ++ T +G G
Sbjct: 104 TGHWVRNCPEAVNERGPTNVSCYKCNRTGHISKNCPETSKTCYGCG 149
>sp|Q8R1J3|ZCHC9_MOUSE Zinc finger CCHC domain-containing protein 9 OS=Mus musculus
GN=Zcchc9 PE=2 SV=1
Length = 273
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 64/159 (40%), Gaps = 19/159 (11%)
Query: 461 KQGQDCFINKGSEHLASDCPGTDQGNNLSSNFCLRCGDSGHDLSSCEGEYHA--DDLKKI 518
K CF + H +DCP + ++ + C RCG + H++S C +
Sbjct: 125 KNAMVCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCRANVDPALGEFPFA 184
Query: 519 QCYICKSFGHL---CCVNSSIIGLKQVSCYNCGQSGHLGPECANSCEALNGKKSNLICYK 575
+C++C GHL C N+ + SC CG H +C N +I
Sbjct: 185 KCFVCGEMGHLSRSCPDNTKGVYADGGSCKLCGSVEHFKKDCRE-----NQNSDRIITV- 238
Query: 576 CGKEGHFARRCGSNFKDRLRISDLLFTAERPPTRARHFV 614
G +A+ ++++D L + L ++P T+ V
Sbjct: 239 ----GRWAKGMSADYEDVLDVPKL----QKPKTKVPKVV 269
Score = 38.1 bits (87), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 15/113 (13%)
Query: 421 NSETCSNCGKENHTAATCKMQKQNKP-----CFLCGSFKHRWKNCKQGQD---------- 465
N+ C +C + H A C +++ C+ CGS +H C+ D
Sbjct: 126 NAMVCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCRANVDPALGEFPFAK 185
Query: 466 CFINKGSEHLASDCPGTDQGNNLSSNFCLRCGDSGHDLSSCEGEYHADDLKKI 518
CF+ HL+ CP +G C CG H C ++D + +
Sbjct: 186 CFVCGEMGHLSRSCPDNTKGVYADGGSCKLCGSVEHFKKDCRENQNSDRIITV 238
>sp|Q8N567|ZCHC9_HUMAN Zinc finger CCHC domain-containing protein 9 OS=Homo sapiens
GN=ZCCHC9 PE=2 SV=2
Length = 271
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 461 KQGQDCFINKGSEHLASDCPGTDQGNNLSSNFCLRCGDSGHDLSSCEGEYHA--DDLKKI 518
K CF + H +DCP + ++ + C RCG + H+++ C+ + +
Sbjct: 125 KNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFA 184
Query: 519 QCYICKSFGHL---CCVNSSIIGLKQVSCYNCGQSGHLGPECANS 560
+C++C GHL C N + C CG HL +C S
Sbjct: 185 KCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPES 229
Score = 40.8 bits (94), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 37/101 (36%), Gaps = 15/101 (14%)
Query: 421 NSETCSNCGKENHTAATCKMQKQNKP-----CFLCGSFKHRWKNCKQGQD---------- 465
N+ C +C K H A C +N+ C+ CGS +H CK D
Sbjct: 126 NAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAK 185
Query: 466 CFINKGSEHLASDCPGTDQGNNLSSNFCLRCGDSGHDLSSC 506
CF+ HL+ CP +G C CG H C
Sbjct: 186 CFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 24/108 (22%)
Query: 484 QGNNLSSNFCLRCGDSGHDLSSCEGEYHADDLKKIQCYICKSFGHLCCVNSSIIGLKQVS 543
Q ++ C C GH ++ C D+ G+
Sbjct: 121 QAAKKNAMVCFHCRKPGHGIADCPAALENQDMG--------------------TGI---- 156
Query: 544 CYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCGSNFK 591
CY CG + H +C + G+ C+ CG+ GH +R C N K
Sbjct: 157 CYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCPDNPK 204
Score = 33.1 bits (74), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 54/152 (35%), Gaps = 24/152 (15%)
Query: 353 MRLGRRVEDTVSVGPIVGERQQKKRRKKTRVIEAKDKVEDAR-KENEAKYNVVLRMLLRK 411
M R+ V G I+ ++ R + ++ + E R K AK N ++ RK
Sbjct: 76 MEYLRQNSQMVHNGQIIATDSEEVREEIAVALKKDSRREGRRLKRQAAKKNAMVCFHCRK 135
Query: 412 PRY--FDPPG------WNSETCSNCGKENHTAATCKMQKQNK-------PCFLCGSFKHR 456
P + D P + C CG H CK + CF+CG H
Sbjct: 136 PGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCGEMGHL 195
Query: 457 WKNCKQ--------GQDCFINKGSEHLASDCP 480
++C G C + EHL DCP
Sbjct: 196 SRSCPDNPKGLYADGGGCKLCGSVEHLKKDCP 227
>sp|Q94C69|CSP3_ARATH Cold shock domain-containing protein 3 OS=Arabidopsis thaliana
GN=CSP3 PE=2 SV=1
Length = 301
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 75/204 (36%), Gaps = 40/204 (19%)
Query: 425 CSNCGKENHTAATC--------------KMQKQNKPCFLCGSFKHRWKNCKQG------- 463
C NCG+ H A C + C++CG H ++C+Q
Sbjct: 96 CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGG 155
Query: 464 -----QDCFINKGSEHLASDCPGTDQGNNLSSNF--------CLRCGDSGHDLSSC-EGE 509
+ C+ HLA DC G GN C CG GH C +
Sbjct: 156 GGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNG 215
Query: 510 YHADDLKKIQCYICKSFGHLCCVNSSII----GLKQVSCYNCGQSGHLGPECANSCEALN 565
CY C GH+ V +S I G +CY CG +GHL +C +
Sbjct: 216 GGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCDRRGSGSS 275
Query: 566 GKKSNL-ICYKCGKEGHFARRCGS 588
G C+ CGKEGHFAR C S
Sbjct: 276 GGGGGSNKCFICGKEGHFARECTS 299
>sp|P05960|POL_HV1C4 Gag-Pol polyprotein (Fragment) OS=Human immunodeficiency virus type
1 group M subtype B (isolate CDC-451) GN=gag-pol PE=3
SV=3
Length = 550
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 17/103 (16%)
Query: 540 KQVSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCGSNFKDRLRISDL 599
K V C+NCG+ GH+ A +C+A K C+KCG+EGH + C + LR DL
Sbjct: 388 KTVKCFNCGKEGHI----ARNCKAPRKKG----CWKCGREGHQMKDCTERQANFLR-EDL 438
Query: 600 LFTAERPPTRARHFVG----SNGTPHGLGNAQGRENDDQREKG 638
F P +AR F +N G GR+N+ E G
Sbjct: 439 AF----PQGKAREFSSEQTRANSPTRGELQVWGRDNNSLSEAG 477
Score = 40.0 bits (92), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQGQDCFI 468
C NCGKE H A CK ++ K C+ CG H+ K+C + Q F+
Sbjct: 392 CFNCGKEGHIARNCKAPRK-KGCWKCGREGHQMKDCTERQANFL 434
>sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 OS=Caenorhabditis elegans GN=glh-4
PE=2 SV=2
Length = 1156
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 66/184 (35%), Gaps = 57/184 (30%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQGQDCFINKGSEHLASDCPGTDQ 484
C NCG+E H + C K P F C +NC+Q H ASDC DQ
Sbjct: 572 CHNCGEEGHISKEC--DKPKVPRFPC-------RNCEQ---------LGHFASDC---DQ 610
Query: 485 GNNLSSNFCLRCGDSGHDLSSCEGEYHADDLKKIQCYICKSFGHLCCVNSSIIGLKQVSC 544
+ C CG GH C D K+ + C
Sbjct: 611 -PRVPRGPCRNCGIEGHFAVDC-------DQPKV---------------------PRGPC 641
Query: 545 YNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCGSNFKDR----LRISDLL 600
NCGQ GH +C N + + C +C +EGH+ C + KD L D +
Sbjct: 642 RNCGQEGHFAKDCQNERVRMEPTEP---CRRCAEEGHWGYECPTRPKDLQGNFLESYDFV 698
Query: 601 FTAE 604
FT +
Sbjct: 699 FTPD 702
>sp|P12498|POL_HV1J3 Gag-Pol polyprotein (Fragment) OS=Human immunodeficiency virus type
1 group M subtype B (isolate JH32) GN=gag-pol PE=3 SV=4
Length = 532
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 47/103 (45%), Gaps = 17/103 (16%)
Query: 540 KQVSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCGSNFKDRLRISDL 599
K + C+NCG+ GHL A +C A K C+KCGKEGH + C + LR DL
Sbjct: 388 KIIKCFNCGKEGHL----ARNCRAPRKKG----CWKCGKEGHQMKDCNERQANFLR-EDL 438
Query: 600 LFTAERPPTRARHFVG----SNGTPHGLGNAQGRENDDQREKG 638
F +AR F +N G GR+N+ E G
Sbjct: 439 AFLQ----GKAREFSSEQTRANSPSRGELQVWGRDNNPLSEAG 477
Score = 38.9 bits (89), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQGQDCFI 468
C NCGKE H A C+ ++ K C+ CG H+ K+C + Q F+
Sbjct: 392 CFNCGKEGHLARNCRAPRK-KGCWKCGKEGHQMKDCNERQANFL 434
>sp|P04588|POL_HV1MA Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate MAL) GN=gag-pol PE=1 SV=3
Length = 1440
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 13/76 (17%)
Query: 538 GLKQVSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCGSNFKDRLRIS 597
G K++ C+NCG+ GHL A +C A K C+KCGKEGH + C + LR
Sbjct: 392 GQKRIKCFNCGKEGHL----ARNCRAPRKKG----CWKCGKEGHQMKDCTERQANFLR-E 442
Query: 598 DLLFTAERPPTRARHF 613
+L F P +AR F
Sbjct: 443 NLAF----PQGKAREF 454
Score = 38.5 bits (88), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQGQDCFI 468
C NCGKE H A C+ ++ K C+ CG H+ K+C + Q F+
Sbjct: 398 CFNCGKEGHLARNCRAPRK-KGCWKCGKEGHQMKDCTERQANFL 440
>sp|P12497|POL_HV1N5 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate NY5) GN=gag-pol PE=1 SV=4
Length = 1435
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 38/74 (51%), Gaps = 13/74 (17%)
Query: 540 KQVSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCGSNFKDRLRISDL 599
K V C+NCG+ GH+ A +C A K C+KCGKEGH + C + LR DL
Sbjct: 388 KTVKCFNCGKEGHI----AKNCRAPRKKG----CWKCGKEGHQMKDCTERQANFLR-EDL 438
Query: 600 LFTAERPPTRARHF 613
F P +AR F
Sbjct: 439 AF----PQGKAREF 448
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQGQDCFI 468
C NCGKE H A C+ ++ K C+ CG H+ K+C + Q F+
Sbjct: 392 CFNCGKEGHIAKNCRAPRK-KGCWKCGKEGHQMKDCTERQANFL 434
>sp|P35963|POL_HV1Y2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate YU-2) GN=gag-pol PE=1 SV=3
Length = 1435
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 38/74 (51%), Gaps = 13/74 (17%)
Query: 540 KQVSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCGSNFKDRLRISDL 599
K V C+NCG+ GH+ A +C A K C+KCGKEGH + C + LR DL
Sbjct: 388 KTVKCFNCGKEGHI----AKNCRAPRKKG----CWKCGKEGHQMKDCTERQANFLR-EDL 438
Query: 600 LFTAERPPTRARHF 613
F P +AR F
Sbjct: 439 AF----PQGKARKF 448
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQGQDCFI 468
C NCGKE H A C+ ++ K C+ CG H+ K+C + Q F+
Sbjct: 392 CFNCGKEGHIAKNCRAPRK-KGCWKCGKEGHQMKDCTERQANFL 434
>sp|P20892|POL_HV1OY Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate OYI) GN=gag-pol PE=3 SV=3
Length = 1434
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 13/74 (17%)
Query: 540 KQVSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCGSNFKDRLRISDL 599
K V C+NCG+ GH+ A +C A K C+KCG+EGH + C + LR DL
Sbjct: 387 KTVKCFNCGKEGHI----AKNCRAPRKKG----CWKCGREGHQMKDCTERQANFLR-EDL 437
Query: 600 LFTAERPPTRARHF 613
F P +AR F
Sbjct: 438 AF----PQGKAREF 447
Score = 38.9 bits (89), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQGQDCFI 468
C NCGKE H A C+ ++ K C+ CG H+ K+C + Q F+
Sbjct: 391 CFNCGKEGHIAKNCRAPRK-KGCWKCGREGHQMKDCTERQANFL 433
>sp|Q9HDB9|GAK8_HUMAN HERV-K_3q12.3 provirus ancestral Gag polyprotein OS=Homo sapiens
GN=ERVK-5 PE=1 SV=3
Length = 667
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 29/59 (49%), Gaps = 16/59 (27%)
Query: 544 CYNCGQSGHLGPECANSCEALN------------GKKSNLICYKCGKEGHFARRCGSNF 590
CYNCGQ GHL SC LN KK + +C KCGK H+A +C S F
Sbjct: 545 CYNCGQIGHL----KRSCPVLNKQNIINQAITAKNKKPSGLCPKCGKGKHWANQCHSKF 599
>sp|P69732|GAG_EIAVY Gag polyprotein OS=Equine infectious anemia virus (strain Wyoming)
GN=gag PE=1 SV=1
Length = 486
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 10/46 (21%)
Query: 543 SCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCGS 588
+CYNCG+ GHL +C ++ +C+KC + GHF+++C S
Sbjct: 382 TCYNCGKPGHLSSQC----------RAPKVCFKCKQPGHFSKQCRS 417
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 28/105 (26%)
Query: 422 SETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCK--------------QGQDCF 467
++TC NCGK H ++ C+ K CF C H K C+ Q Q
Sbjct: 380 AQTCYNCGKPGHLSSQCRAPKV---CFKCKQPGHFSKQCRSVPKNGKQGAQGRPQKQTFP 436
Query: 468 INKGSEHLASDCPGTDQGNNLSSNFCLRCGDSGHDLSSCEGEYHA 512
I + S+H S T Q NL DLS + EY+
Sbjct: 437 IQQKSQHNKSVVQETPQTQNLYP-----------DLSEIKKEYNV 470
>sp|P69731|GAG_EIAVC Gag polyprotein OS=Equine infectious anemia virus (isolate CL22)
GN=gag PE=3 SV=1
Length = 486
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 10/46 (21%)
Query: 543 SCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCGS 588
+CYNCG+ GHL +C ++ +C+KC + GHF+++C S
Sbjct: 382 TCYNCGKPGHLSSQC----------RAPKVCFKCKQPGHFSKQCRS 417
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 28/105 (26%)
Query: 422 SETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCK--------------QGQDCF 467
++TC NCGK H ++ C+ K CF C H K C+ Q Q
Sbjct: 380 AQTCYNCGKPGHLSSQCRAPKV---CFKCKQPGHFSKQCRSVPKNGKQGAQGRPQKQTFP 436
Query: 468 INKGSEHLASDCPGTDQGNNLSSNFCLRCGDSGHDLSSCEGEYHA 512
I + S+H S T Q NL DLS + EY+
Sbjct: 437 IQQKSQHNKSVVQETPQTQNLYP-----------DLSEIKKEYNV 470
>sp|P69730|GAG_EIAV9 Gag polyprotein OS=Equine infectious anemia virus (isolate 1369)
GN=gag PE=1 SV=1
Length = 486
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 10/46 (21%)
Query: 543 SCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCGS 588
+CYNCG+ GHL +C ++ +C+KC + GHF+++C S
Sbjct: 382 TCYNCGKPGHLSSQC----------RAPKVCFKCKQPGHFSKQCRS 417
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 28/105 (26%)
Query: 422 SETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCK--------------QGQDCF 467
++TC NCGK H ++ C+ K CF C H K C+ Q Q
Sbjct: 380 AQTCYNCGKPGHLSSQCRAPKV---CFKCKQPGHFSKQCRSVPKNGKQGAQGRPQKQTFP 436
Query: 468 INKGSEHLASDCPGTDQGNNLSSNFCLRCGDSGHDLSSCEGEYHA 512
I + S+H S T Q NL DLS + EY+
Sbjct: 437 IQQKSQHNKSVVQETPQTQNLYP-----------DLSEIKKEYNV 470
>sp|P40507|AIR1_YEAST Protein AIR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=AIR1 PE=1 SV=1
Length = 360
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 57/163 (34%), Gaps = 30/163 (18%)
Query: 405 LRMLLRKPRYFDPPGWNSE--------TCSNCGKENHTAATCKMQKQNKPCFLCGSFK-H 455
LR L + RYF ++S C+NC + H C + C CG H
Sbjct: 48 LRTLRGQGRYFGITDYDSNGAIMEAEPKCNNCSQRGHLKRNCP----HVICTYCGFMDDH 103
Query: 456 RWKNCKQGQDCFINKGSEHLASDCPGTDQGNNLSSNFCLRCGDSGHDLSSCEGEYHADDL 515
++C + C + H S CP + FC C H C + + L
Sbjct: 104 YSQHCPKAIICTNCNANGHYKSQCP-----HKWKKVFCTLCNSKRHSRERCPSIWRSYLL 158
Query: 516 KKIQCYICKSFGHLCCVNSSIIGLKQVSCYNCGQSGHLGPECA 558
K N + V CYNCG +GH G +CA
Sbjct: 159 KTKD------------ANQGDFDFQTVFCYNCGNAGHFGDDCA 189
>sp|P20875|POL_HV1JR Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate JRCSF) GN=gag-pol PE=1 SV=3
Length = 1439
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 540 KQVSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCGSNFKDRLRISDL 599
K V C+NCG+ GH+ A +C A K C+KCGKEGH + C + LR DL
Sbjct: 388 KNVKCFNCGKEGHI----ARNCRAPRKKG----CWKCGKEGHQMKECTERQANFLR-EDL 438
Query: 600 LF 601
F
Sbjct: 439 AF 440
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQGQDCFI 468
C NCGKE H A C+ ++ K C+ CG H+ K C + Q F+
Sbjct: 392 CFNCGKEGHIARNCRAPRK-KGCWKCGKEGHQMKECTERQANFL 434
Score = 33.1 bits (74), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 567 KKSNLICYKCGKEGHFARRC 586
++ N+ C+ CGKEGH AR C
Sbjct: 386 QRKNVKCFNCGKEGHIARNC 405
>sp|Q75001|GAG_HV1ET Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate ETH2220) GN=gag PE=3 SV=3
Length = 504
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 11/62 (17%)
Query: 540 KQVSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCG---SNFKDRLRI 596
+ + C+NCG+ GHL A +C A K C+KCGKEGH + C +NF RL
Sbjct: 385 RAIKCFNCGKEGHL----ARNCRAPRKKG----CWKCGKEGHQMKDCTERQANFLGRLWP 436
Query: 597 SD 598
S+
Sbjct: 437 SN 438
Score = 38.9 bits (89), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQGQDCFINK 470
C NCGKE H A C+ ++ K C+ CG H+ K+C + Q F+ +
Sbjct: 389 CFNCGKEGHLARNCRAPRK-KGCWKCGKEGHQMKDCTERQANFLGR 433
Score = 33.9 bits (76), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 564 LNGKKSNLICYKCGKEGHFARRC 586
G K + C+ CGKEGH AR C
Sbjct: 380 FKGPKRAIKCFNCGKEGHLARNC 402
>sp|Q12476|AIR2_YEAST Protein AIR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=AIR2 PE=1 SV=1
Length = 344
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 49/128 (38%), Gaps = 30/128 (23%)
Query: 447 CFLCGSFKHRWKNCKQGQDCFINKGSEHLASDCPGTDQGNNLSSNFCLRCGDSGHDLSSC 506
C C H K+C + +H + CP Q C +C + GH S C
Sbjct: 63 CNNCSQRGHLKKDCPHIICSYCGATDDHYSRHCPKAIQ--------CSKCDEVGHYRSQC 114
Query: 507 EGEYHADDLKKIQCYICKSFGH-----------LCCVNSS------IIGLKQVSCYNCGQ 549
++ KK+QC +CKS H V+ + ++ + CYNCG
Sbjct: 115 PHKW-----KKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGG 169
Query: 550 SGHLGPEC 557
GH G +C
Sbjct: 170 KGHFGDDC 177
>sp|Q9HFF2|YL92_SCHPO Uncharacterized protein C683.02c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC683.02c PE=4 SV=1
Length = 218
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 466 CFINKGSEHLASDCPGTDQGNNLSSNFCLRCGDSGHDLSSCEGEYHADDLKKIQCYICKS 525
CF + H+ DCP + +N+S C RCG H L++C + LK +C+IC
Sbjct: 79 CFACRQQGHIVQDCP--EAKDNVS--ICFRCGSKEHSLNACSKK---GPLKFAKCFICHE 131
Query: 526 FGHL---CCVNSSIIGLKQVSCYNCGQSGHLGPEC 557
GHL C N + K C C HL +C
Sbjct: 132 NGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDC 166
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 16/111 (14%)
Query: 425 CSNCGKENHTAATCKMQKQN-KPCFLCGSFKHRWKNC-KQG----QDCFINKGSEHLASD 478
C C ++ H C K N CF CGS +H C K+G CFI + HL+
Sbjct: 79 CFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQ 138
Query: 479 CPGTDQGNNLSSNFCLRCGDSGHDLSSCEGEYHADDLKKIQCYICKSFGHL 529
C +G C C H C+ + + DD+ SFGH+
Sbjct: 139 CEQNPKGLYPKGGCCKFCSSVHHLAKDCD-QVNKDDV---------SFGHV 179
>sp|P04594|GAG_HV1MA Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate MAL) GN=gag PE=3 SV=3
Length = 505
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 11/63 (17%)
Query: 538 GLKQVSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCG---SNFKDRL 594
G K++ C+NCG+ GHL A +C A K C+KCGKEGH + C +NF ++
Sbjct: 392 GQKRIKCFNCGKEGHL----ARNCRAPRKKG----CWKCGKEGHQMKDCTERQANFLGKI 443
Query: 595 RIS 597
S
Sbjct: 444 WPS 446
Score = 39.7 bits (91), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQGQDCFINK 470
C NCGKE H A C+ ++ K C+ CG H+ K+C + Q F+ K
Sbjct: 398 CFNCGKEGHLARNCRAPRK-KGCWKCGKEGHQMKDCTERQANFLGK 442
>sp|P04587|POL_HV1B5 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH5) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 9/62 (14%)
Query: 540 KQVSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCGSNFKDRLRISDL 599
K V C+NCG+ GH+ A +C+A K C+KCGKEGH + C + LR DL
Sbjct: 388 KIVKCFNCGKEGHI----ARNCKAPRKKG----CWKCGKEGHQMKDCTERQANFLR-EDL 438
Query: 600 LF 601
F
Sbjct: 439 AF 440
Score = 39.7 bits (91), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQGQDCFI 468
C NCGKE H A CK ++ K C+ CG H+ K+C + Q F+
Sbjct: 392 CFNCGKEGHIARNCKAPRK-KGCWKCGKEGHQMKDCTERQANFL 434
>sp|P24736|GAG_HV1U4 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate U455) GN=gag PE=1 SV=3
Length = 493
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 11/64 (17%)
Query: 538 GLKQVSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCG---SNFKDRL 594
G +++ C+NCG+ GHL A +C A K C+KCGKEGH + C +NF ++
Sbjct: 380 GPRRIKCFNCGKEGHL----AKNCRAPRKKG----CWKCGKEGHQMKDCTERQANFLGKI 431
Query: 595 RISD 598
S+
Sbjct: 432 WPSN 435
Score = 40.0 bits (92), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQGQDCFINK 470
C NCGKE H A C+ ++ K C+ CG H+ K+C + Q F+ K
Sbjct: 386 CFNCGKEGHLAKNCRAPRK-KGCWKCGKEGHQMKDCTERQANFLGK 430
>sp|P24740|POL_HV1U4 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate U455) GN=gag-pol PE=1 SV=3
Length = 1428
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Query: 538 GLKQVSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCGSNFKDRLR 595
G +++ C+NCG+ GHL A +C A K C+KCGKEGH + C + LR
Sbjct: 380 GPRRIKCFNCGKEGHL----AKNCRAPRKKG----CWKCGKEGHQMKDCTERQANFLR 429
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQGQDCFI 468
C NCGKE H A C+ ++ K C+ CG H+ K+C + Q F+
Sbjct: 386 CFNCGKEGHLAKNCRAPRK-KGCWKCGKEGHQMKDCTERQANFL 428
>sp|P03367|POL_HV1BR Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BRU/LAI) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 540 KQVSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCGSNFKDRLRISDL 599
K V C+NCG+ GH+ A +C A K C+KCGKEGH + C + LR DL
Sbjct: 388 KIVKCFNCGKEGHI----ARNCRAPRKKG----CWKCGKEGHQMKDCTERQANFLR-EDL 438
Query: 600 LF 601
F
Sbjct: 439 AF 440
Score = 38.9 bits (89), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQGQDCFI 468
C NCGKE H A C+ ++ K C+ CG H+ K+C + Q F+
Sbjct: 392 CFNCGKEGHIARNCRAPRK-KGCWKCGKEGHQMKDCTERQANFL 434
>sp|P04593|GAG_HV1B5 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH5) GN=gag PE=3 SV=3
Length = 512
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Query: 540 KQVSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCG---SNFKDRLRI 596
K V C+NCG+ GH+ A +C+A K C+KCGKEGH + C +NF ++
Sbjct: 388 KIVKCFNCGKEGHI----ARNCKAPRKKG----CWKCGKEGHQMKDCTERQANFLGKIWP 439
Query: 597 S----DLLFTAERPPTRARHFVGSNGTP 620
S F RP A F+ S P
Sbjct: 440 SYKGRPGNFLQSRPEPTAPPFLQSRPEP 467
Score = 41.2 bits (95), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQGQDCFINK 470
C NCGKE H A CK ++ K C+ CG H+ K+C + Q F+ K
Sbjct: 392 CFNCGKEGHIARNCKAPRK-KGCWKCGKEGHQMKDCTERQANFLGK 436
>sp|Q73368|POL_HV1B9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (strain 89.6) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 13/74 (17%)
Query: 540 KQVSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCGSNFKDRLRISDL 599
K V C+NCG+ GH+ A +C A K C+KCGKEGH + C + R +L
Sbjct: 388 KTVKCFNCGKEGHI----AKNCRAPRKKG----CWKCGKEGHQMKDCTERQANFFR-ENL 438
Query: 600 LFTAERPPTRARHF 613
F P +AR F
Sbjct: 439 AF----PQGKAREF 448
Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQGQDCFI 468
C NCGKE H A C+ ++ K C+ CG H+ K+C + Q F
Sbjct: 392 CFNCGKEGHIAKNCRAPRK-KGCWKCGKEGHQMKDCTERQANFF 434
>sp|P03366|POL_HV1B1 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH10) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 540 KQVSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCGSNFKDRLRISDL 599
K V C+NCG+ GH A +C A K C+KCGKEGH + C + LR DL
Sbjct: 388 KMVKCFNCGKEGH----TARNCRAPRKKG----CWKCGKEGHQMKDCTERQANFLR-EDL 438
Query: 600 LF 601
F
Sbjct: 439 AF 440
Score = 40.8 bits (94), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQGQDCFI 468
C NCGKE HTA C+ ++ K C+ CG H+ K+C + Q F+
Sbjct: 392 CFNCGKEGHTARNCRAPRK-KGCWKCGKEGHQMKDCTERQANFL 434
>sp|P12451|POL_HV2SB Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate SBLISY) GN=gag-pol PE=3 SV=3
Length = 1462
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 11/100 (11%)
Query: 540 KQVSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCGSNFKDRLRISDL 599
+ + C+NCG+ GH A C A + C+KCGK GH C LR +
Sbjct: 386 RAIKCWNCGKEGH----SARQCRAPRRQG----CWKCGKSGHIMANCPDRQAGFLRAWTM 437
Query: 600 LFTAERPPTRARHFVG--SNGTPHGLGNAQGRENDDQREK 637
A + P R F G +N TP+G + E REK
Sbjct: 438 GKEAPQLP-RGPKFAGANTNSTPNGSSSGPTGEVHAAREK 476
Score = 37.7 bits (86), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQGQDCFINKGSEHLASDCPGTDQ 484
C NCGKE H+A C+ ++ C+ CG H NC Q F+ + + + P +
Sbjct: 390 CWNCGKEGHSARQCRAPRRQG-CWKCGKSGHIMANCPDRQAGFLRAWT--MGKEAPQLPR 446
Query: 485 GNNLS 489
G +
Sbjct: 447 GPKFA 451
>sp|P12499|POL_HV1Z2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate Z2/CDC-Z34) GN=gag-pol PE=1 SV=3
Length = 1436
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 540 KQVSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCGSNFKDRLRISDL 599
K + C+NCG+ GH+ A +C A K C+KCGKEGH + C + LR DL
Sbjct: 390 KTIKCFNCGKEGHI----AKNCRAPRRKG----CWKCGKEGHQLKDCTERQANFLR-EDL 440
Query: 600 LF 601
F
Sbjct: 441 AF 442
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQGQDCFI 468
C NCGKE H A C+ ++ K C+ CG H+ K+C + Q F+
Sbjct: 394 CFNCGKEGHIAKNCRAPRR-KGCWKCGKEGHQLKDCTERQANFL 436
>sp|Q02843|GAG_SIVG1 Gag polyprotein OS=Simian immunodeficiency virus agm.grivet
(isolate AGM gr-1) GN=gag PE=1 SV=1
Length = 513
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQGQDCFINKG 471
C NCGK H CK +Q K CF CG H K+CK GQ F+ G
Sbjct: 392 CFNCGKFGHMQRECKAPRQIK-CFKCGKIGHMAKDCKNGQANFLGYG 437
Score = 39.7 bits (91), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
Query: 542 VSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRC 586
+ C+NCG+ GH+ EC + C+KCGK GH A+ C
Sbjct: 390 LKCFNCGKFGHMQRECKAP--------RQIKCFKCGKIGHMAKDC 426
Score = 36.6 bits (83), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 15/73 (20%)
Query: 518 IQCYICKSFGHLCCVNSSIIGLKQVSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCG 577
++C+ C FGH+ +Q+ C+ CG+ GH+ +C N ++N + Y
Sbjct: 390 LKCFNCGKFGHM---QRECKAPRQIKCFKCGKIGHMAKDCKNG-------QANFLGY--- 436
Query: 578 KEGHFARRCGSNF 590
GH+ NF
Sbjct: 437 --GHWGGAKPRNF 447
>sp|P03348|GAG_HV1BR Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BRU/LAI) GN=gag PE=1 SV=3
Length = 512
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 15/88 (17%)
Query: 540 KQVSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCG---SNFKDRLRI 596
K V C+NCG+ GH+ A +C A K C+KCGKEGH + C +NF ++
Sbjct: 388 KIVKCFNCGKEGHI----ARNCRAPRKKG----CWKCGKEGHQMKDCTERQANFLGKIWP 439
Query: 597 S----DLLFTAERPPTRARHFVGSNGTP 620
S F RP A F+ S P
Sbjct: 440 SYKGRPGNFLQSRPEPTAPPFLQSRPEP 467
Score = 40.4 bits (93), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQGQDCFINK 470
C NCGKE H A C+ ++ K C+ CG H+ K+C + Q F+ K
Sbjct: 392 CFNCGKEGHIARNCRAPRK-KGCWKCGKEGHQMKDCTERQANFLGK 436
>sp|P03347|GAG_HV1B1 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH10) GN=gag PE=1 SV=3
Length = 512
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Query: 540 KQVSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCG---SNFKDRLRI 596
K V C+NCG+ GH A +C A K C+KCGKEGH + C +NF ++
Sbjct: 388 KMVKCFNCGKEGH----TARNCRAPRKKG----CWKCGKEGHQMKDCTERQANFLGKIWP 439
Query: 597 S----DLLFTAERPPTRARHFVGSNGTP 620
S F RP A F+ S P
Sbjct: 440 SYKGRPGNFLQSRPEPTAPPFLQSRPEP 467
Score = 42.4 bits (98), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQGQDCFINK 470
C NCGKE HTA C+ ++ K C+ CG H+ K+C + Q F+ K
Sbjct: 392 CFNCGKEGHTARNCRAPRK-KGCWKCGKEGHQMKDCTERQANFLGK 436
>sp|P35955|GAG_VILVK Gag polyprotein OS=Maedi visna virus (strain KV1772) GN=gag PE=3
SV=1
Length = 442
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 544 CYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRC 586
CYNCG+ GHL +C + +IC+ CGK GH + C
Sbjct: 387 CYNCGKPGHLARQC----------RQGIICHHCGKRGHMQKDC 419
Score = 32.7 bits (73), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 422 SETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
++ C NCGK H A C +Q C CG H K+C+Q
Sbjct: 384 NQKCYNCGKPGHLARQC---RQGIICHHCGKRGHMQKDCRQ 421
>sp|P23425|GAG_VILV2 Gag polyprotein OS=Maedi visna virus (strain 1514 / clone LV1-1KS2)
GN=gag PE=3 SV=1
Length = 442
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 544 CYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRC 586
CYNCG+ GHL +C + +IC+ CGK GH + C
Sbjct: 387 CYNCGKPGHLARQC----------RQGIICHHCGKRGHMQKDC 419
Score = 32.7 bits (73), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 422 SETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
++ C NCGK H A C +Q C CG H K+C+Q
Sbjct: 384 NQKCYNCGKPGHLARQC---RQGIICHHCGKRGHMQKDCRQ 421
>sp|P23424|GAG_VILV1 Gag polyprotein OS=Maedi visna virus (strain 1514 / clone LV1-1KS1)
GN=gag PE=3 SV=1
Length = 442
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 544 CYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRC 586
CYNCG+ GHL +C + +IC+ CGK GH + C
Sbjct: 387 CYNCGKPGHLARQC----------RQGIICHHCGKRGHMQKDC 419
Score = 32.7 bits (73), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 422 SETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
++ C NCGK H A C +Q C CG H K+C+Q
Sbjct: 384 NQKCYNCGKPGHLARQC---RQGIICHHCGKRGHMQKDCRQ 421
>sp|Q02836|POL_SIVG1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.grivet
(isolate AGM gr-1) GN=gag-pol PE=3 SV=2
Length = 1472
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 17/87 (19%)
Query: 542 VSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCGSNFKDRLRISDL-- 599
+ C+NCG+ GH+ EC + C+KCGK GH A+ C + + R+ L
Sbjct: 390 LKCFNCGKFGHMQRECKAP--------RQIKCFKCGKIGHMAKDCKNGQANFFRVWPLGR 441
Query: 600 ----LFTAERPPTRARHFVGSNGTPHG 622
F A + R + G+N P+G
Sbjct: 442 SETKKFCAIQ---RRHSWSGTNSPPNG 465
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQGQDCFI 468
C NCGK H CK +Q K CF CG H K+CK GQ F
Sbjct: 392 CFNCGKFGHMQRECKAPRQIK-CFKCGKIGHMAKDCKNGQANFF 434
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 518 IQCYICKSFGHLCCVNSSIIGLKQVSCYNCGQSGHLGPECAN 559
++C+ C FGH+ +Q+ C+ CG+ GH+ +C N
Sbjct: 390 LKCFNCGKFGHM---QRECKAPRQIKCFKCGKIGHMAKDCKN 428
>sp|P04585|POL_HV1H2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate HXB2) GN=gag-pol PE=1 SV=4
Length = 1435
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 45/103 (43%), Gaps = 17/103 (16%)
Query: 540 KQVSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCGSNFKDRLRISDL 599
K V C+NCG+ GH A +C A K C+KCGKEGH + C + LR DL
Sbjct: 388 KIVKCFNCGKEGH----TARNCRAPRKKG----CWKCGKEGHQMKDCTERQANFLR-EDL 438
Query: 600 LFTAERPPTRARHFVG----SNGTPHGLGNAQGRENDDQREKG 638
F +AR F +N GR+N+ E G
Sbjct: 439 AFLQ----GKAREFSSEQTRANSPTRRELQVWGRDNNSPSEAG 477
Score = 40.8 bits (94), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQGQDCFI 468
C NCGKE HTA C+ ++ K C+ CG H+ K+C + Q F+
Sbjct: 392 CFNCGKEGHTARNCRAPRK-KGCWKCGKEGHQMKDCTERQANFL 434
>sp|P20873|GAG_HV1JR Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate JRCSF) GN=gag PE=3 SV=3
Length = 504
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 11/61 (18%)
Query: 540 KQVSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCG---SNFKDRLRI 596
K V C+NCG+ GH+ A +C A K C+KCGKEGH + C +NF ++
Sbjct: 388 KNVKCFNCGKEGHI----ARNCRAPRKKG----CWKCGKEGHQMKECTERQANFLGKIWP 439
Query: 597 S 597
S
Sbjct: 440 S 440
Score = 39.7 bits (91), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQGQDCFINK 470
C NCGKE H A C+ ++ K C+ CG H+ K C + Q F+ K
Sbjct: 392 CFNCGKEGHIARNCRAPRK-KGCWKCGKEGHQMKECTERQANFLGK 436
Score = 33.1 bits (74), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 567 KKSNLICYKCGKEGHFARRC 586
++ N+ C+ CGKEGH AR C
Sbjct: 386 QRKNVKCFNCGKEGHIARNC 405
>sp|P0C1K7|GAG_HV19N Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate 92NG083) GN=gag PE=3 SV=2
Length = 497
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 11/60 (18%)
Query: 542 VSCYNCGQSGHLGPECANSCEALNGKKSNLICYKCGKEGHFARRCG---SNFKDRLRISD 598
+ C+NCG+ GHL A +C A K C+KCGKEGH + C +NF ++ S+
Sbjct: 391 IKCFNCGKEGHL----ARNCRAPRKKG----CWKCGKEGHQMKECTERQANFLGKIWPSN 442
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQGQDCFINK 470
C NCGKE H A C+ ++ K C+ CG H+ K C + Q F+ K
Sbjct: 393 CFNCGKEGHLARNCRAPRK-KGCWKCGKEGHQMKECTERQANFLGK 437
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 243,143,777
Number of Sequences: 539616
Number of extensions: 10810709
Number of successful extensions: 40248
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 871
Number of HSP's that attempted gapping in prelim test: 35798
Number of HSP's gapped (non-prelim): 3711
length of query: 638
length of database: 191,569,459
effective HSP length: 124
effective length of query: 514
effective length of database: 124,657,075
effective search space: 64073736550
effective search space used: 64073736550
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)