BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006621
         (638 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q42534|PME2_ARATH Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2
          Length = 587

 Score = 37.7 bits (86), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 14/149 (9%)

Query: 429 AVLILGRKSLGPPEEFAIARIVETFIGLTCTIIGELLFQSTRASTLAKSQLSKSLGTLHD 488
           AV   G K L   +E     ++E  + LT   +    F   +     K    + +  LHD
Sbjct: 78  AVAATGGKELTSQKE-----VIEASLNLTTKAVKHNYFAVKKLIAKRKGLTPREVTALHD 132

Query: 489 CISSM--TLRASQASL--LH---KQKRLKMHVNELGTLIGEADVEPNFGFLPF-HSACYS 540
           C+ ++  TL     ++  LH   KQK L+ H ++L TLI  A          F +     
Sbjct: 133 CLETIDETLDELHVAVEDLHQYPKQKSLRKHADDLKTLISSAITNQGTCLDGFSYDDADR 192

Query: 541 KLLVSLVK-MVHLLHFCSYSIGFLEQESQ 568
           K+  +L+K  VH+ H CS ++  ++  ++
Sbjct: 193 KVRKALLKGQVHVEHMCSNALAMIKNMTE 221


>sp|P42248|YCBP_BACSU Uncharacterized protein YcbP OS=Bacillus subtilis (strain 168)
           GN=ycbP PE=4 SV=1
          Length = 128

 Score = 35.0 bits (79), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 33  TFPAFSYVTVILIVTDATLGDT-LHGCWLALYATVQSIGPALLTMWLIGPARLTTGTTAL 91
           TF     +T++L V    LGD  +   W  + AT+   G A L +WL+G   L+ G T  
Sbjct: 29  TFGDTLLMTIVLGVISYLLGDLYVLPKWNNMIATLADFGLAFLVIWLMG-MPLSMGMTGG 87

Query: 92  AVAIAAFFVAL 102
            VA+AA F A+
Sbjct: 88  EVALAALFGAI 98


>sp|O49006|PME3_ARATH Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana
           GN=PME3 PE=2 SV=2
          Length = 592

 Score = 34.3 bits (77), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 67/152 (44%), Gaps = 10/152 (6%)

Query: 449 IVETFIGLTCTIIGELLFQSTRASTLAKSQLSKSLGTLHDCISSM--TLRASQASL--LH 504
           ++E  + LT T +    F   +     K    +    LHDC+ ++  TL     ++  LH
Sbjct: 90  VIEASVNLTITAVEHNYFTVKKLIKKRKGLTPREKTALHDCLETIDETLDELHETVEDLH 149

Query: 505 ---KQKRLKMHVNELGTLIGEADVEPNFGFLPF-HSACYSKLLVSLVK-MVHLLHFCSYS 559
               +K L+ H  +L TLI  A          F H     ++  +L+K  +H+ H CS +
Sbjct: 150 LYPTKKTLREHAGDLKTLISSAITNQETCLDGFSHDDADKQVRKALLKGQIHVEHMCSNA 209

Query: 560 IGFLEQESQKIDKASWKEDVQKLDGDVKLVKE 591
           +  ++  +   D A++++  +    + KL +E
Sbjct: 210 LAMIKNMTD-TDIANFEQKAKITSNNRKLKEE 240


>sp|Q31WA8|AAEB_SHIBS p-hydroxybenzoic acid efflux pump subunit AaeB OS=Shigella boydii
           serotype 4 (strain Sb227) GN=aaeB PE=3 SV=1
          Length = 655

 Score = 33.5 bits (75), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 408 TSFLRHGRMYGQG-GGISAVIGAVLILGRKSLGPPEEFAIARIVETFIGLTCTIIGELLF 466
           +S +R    Y  G  G +A+I  + I     L P  +FA+ R  E  IG+ C II +LLF
Sbjct: 110 SSLVRIENSYAWGLAGYTALIIVITIQPEPLLTP--QFAVERCSEIVIGIVCAIIADLLF 167


>sp|D5CDA0|AAEB_ENTCC p-hydroxybenzoic acid efflux pump subunit AaeB OS=Enterobacter
           cloacae subsp. cloacae (strain ATCC 13047 / DSM 30054 /
           NBRC 13535 / NCDC 279-56) GN=aaeB PE=3 SV=1
          Length = 655

 Score = 32.7 bits (73), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 407 FTSFLRHGRMYGQG-GGISAVIGAVLILGRKSLGPPEEFAIARIVETFIGLTCTIIGELL 465
            +S ++    Y  G  G +A+I  + I     L P  +FA+ R  E  IG+ C I+ +LL
Sbjct: 109 LSSLVKVENSYAWGLAGYTALIIVITIQTEPLLAP--QFAVERCSEIVIGIVCAIVADLL 166

Query: 466 F 466
           F
Sbjct: 167 F 167


>sp|A8AQD4|AAEB_CITK8 p-hydroxybenzoic acid efflux pump subunit AaeB OS=Citrobacter
           koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
           GN=aaeB PE=3 SV=1
          Length = 655

 Score = 32.7 bits (73), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 407 FTSFLRHGRMYGQG-GGISAVIGAVLILGRKSLGPPEEFAIARIVETFIGLTCTIIGELL 465
            +S +R    Y  G  G +A+I  + I     L P  +FA+ R  E  IG+ C I+ +LL
Sbjct: 109 ISSLVRVENSYAWGLSGYTALIIVITIQAEPLLTP--QFAVERCSEIVIGIVCAIMADLL 166

Query: 466 F 466
           F
Sbjct: 167 F 167


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.136    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 223,130,839
Number of Sequences: 539616
Number of extensions: 8888185
Number of successful extensions: 27011
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 27010
Number of HSP's gapped (non-prelim): 37
length of query: 638
length of database: 191,569,459
effective HSP length: 124
effective length of query: 514
effective length of database: 124,657,075
effective search space: 64073736550
effective search space used: 64073736550
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 64 (29.3 bits)