Query 006621
Match_columns 638
No_of_seqs 59 out of 61
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 12:04:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006621.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006621hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04632 FUSC: Fusaric acid re 99.8 1E-18 2.3E-23 195.6 14.5 216 346-565 20-244 (650)
2 TIGR01667 YCCS_YHJK integral m 99.7 4.1E-14 8.8E-19 162.6 29.1 206 347-565 402-618 (701)
3 PF11744 ALMT: Aluminium activ 99.6 2.1E-15 4.6E-20 163.4 16.4 250 351-608 39-319 (406)
4 PRK10631 p-hydroxybenzoic acid 99.6 3E-15 6.5E-20 170.2 12.4 184 346-529 27-228 (652)
5 PRK11427 multidrug efflux syst 99.6 7.8E-13 1.7E-17 150.7 29.6 241 349-594 372-625 (683)
6 TIGR01666 YCCS hypothetical me 99.6 4.9E-13 1.1E-17 153.7 28.0 206 347-566 400-616 (704)
7 PF04632 FUSC: Fusaric acid re 99.2 1.2E-09 2.5E-14 123.2 24.3 461 5-492 1-515 (650)
8 PRK11427 multidrug efflux syst 99.1 5.6E-10 1.2E-14 127.7 10.8 197 347-554 49-256 (683)
9 COG4129 Predicted membrane pro 99.0 4.4E-09 9.6E-14 112.0 16.1 213 345-567 27-249 (332)
10 PF13515 FUSC_2: Fusaric acid 98.9 1.1E-09 2.4E-14 98.4 3.5 113 346-462 7-128 (128)
11 COG1289 Predicted membrane pro 98.8 1.5E-07 3.2E-12 108.3 18.1 177 348-530 375-559 (674)
12 PF11744 ALMT: Aluminium activ 98.6 3.1E-07 6.7E-12 100.4 11.0 245 5-260 10-275 (406)
13 PF06081 DUF939: Bacterial pro 98.5 1E-07 2.2E-12 90.0 4.8 114 345-466 21-141 (141)
14 COG1289 Predicted membrane pro 97.8 0.0003 6.5E-09 81.3 14.5 137 347-484 30-177 (674)
15 PF10337 DUF2422: Protein of u 97.6 0.0023 5E-08 70.9 18.1 214 351-566 44-322 (459)
16 PF10334 DUF2421: Protein of u 97.5 0.0016 3.5E-08 66.0 13.2 97 467-564 2-111 (229)
17 PF12805 FUSC-like: FUSC-like 97.3 0.0078 1.7E-07 62.7 16.0 136 381-523 11-159 (284)
18 PRK10631 p-hydroxybenzoic acid 96.7 0.58 1.3E-05 55.0 25.7 170 6-186 9-192 (652)
19 TIGR01667 YCCS_YHJK integral m 96.7 0.0061 1.3E-07 71.5 9.5 141 42-192 414-556 (701)
20 COG4129 Predicted membrane pro 95.9 0.087 1.9E-06 57.0 12.4 168 7-189 8-178 (332)
21 KOG4711 Predicted membrane pro 95.8 0.015 3.3E-07 67.3 6.2 197 351-547 121-359 (625)
22 TIGR01666 YCCS hypothetical me 95.6 0.051 1.1E-06 64.0 9.7 177 42-230 412-590 (704)
23 TIGR02865 spore_II_E stage II 94.3 3.1 6.7E-05 49.8 19.7 256 354-626 171-483 (764)
24 PF10337 DUF2422: Protein of u 93.9 0.12 2.7E-06 57.4 6.8 247 9-266 19-322 (459)
25 COG3851 UhpB Signal transducti 87.6 3.9 8.5E-05 45.4 10.2 134 382-527 191-335 (497)
26 PF13515 FUSC_2: Fusaric acid 80.8 0.76 1.6E-05 41.3 1.1 111 35-154 12-127 (128)
27 KOG4711 Predicted membrane pro 72.0 5.7 0.00012 46.7 5.4 175 347-553 308-493 (625)
28 KOG4331 Polytopic membrane pro 55.7 2.7E+02 0.0058 34.4 14.7 76 542-622 247-323 (865)
29 PRK00591 prfA peptide chain re 55.3 1.3E+02 0.0027 33.6 11.4 47 501-554 3-49 (359)
30 TIGR00019 prfA peptide chain r 54.1 1.5E+02 0.0032 33.1 11.7 51 502-556 5-55 (360)
31 PF12732 YtxH: YtxH-like prote 51.6 77 0.0017 26.9 7.3 47 145-192 5-51 (74)
32 PF12732 YtxH: YtxH-like prote 48.8 1.7E+02 0.0036 24.8 8.9 42 451-493 4-45 (74)
33 COG4980 GvpP Gas vesicle prote 48.5 1.4E+02 0.0031 28.3 9.0 45 449-493 8-55 (115)
34 PF06081 DUF939: Bacterial pro 46.8 35 0.00075 32.5 4.9 46 38-83 30-76 (141)
35 PF05218 DUF713: Protein of un 44.9 3.4E+02 0.0074 27.3 14.5 137 474-627 5-156 (182)
36 PF12805 FUSC-like: FUSC-like 44.6 42 0.0009 35.2 5.6 100 86-190 23-123 (284)
37 PRK09110 flagellar motor prote 38.8 63 0.0014 34.7 5.8 54 412-469 166-223 (283)
38 PF08824 Serine_rich: Serine r 36.4 1.6E+02 0.0035 29.2 7.8 19 503-521 11-29 (159)
39 PF14362 DUF4407: Domain of un 36.1 4.3E+02 0.0093 27.9 11.6 27 444-470 82-109 (301)
40 PRK00578 prfB peptide chain re 35.4 2.4E+02 0.0052 31.6 9.8 42 508-556 27-68 (367)
41 COG4190 Predicted transcriptio 31.3 1E+02 0.0022 30.2 5.3 77 501-593 23-99 (144)
42 PF06103 DUF948: Bacterial pro 28.3 3.2E+02 0.007 23.7 7.6 40 454-493 6-45 (90)
43 PF10334 DUF2421: Protein of u 27.7 1.2E+02 0.0027 30.9 5.7 73 159-231 1-76 (229)
44 PF10191 COG7: Golgi complex c 27.5 5.1E+02 0.011 31.6 11.5 42 534-582 201-242 (766)
45 COG0811 TolQ Biopolymer transp 26.3 1.2E+02 0.0027 30.9 5.4 83 87-190 126-209 (216)
46 KOG2273 Membrane coat complex 26.3 1E+03 0.022 27.1 13.6 77 475-561 303-380 (503)
47 COG0260 PepB Leucyl aminopepti 25.7 48 0.001 38.2 2.5 33 521-557 393-425 (485)
48 PF05791 Bacillus_HBL: Bacillu 25.2 3.5E+02 0.0077 26.9 8.2 41 576-619 134-174 (184)
49 PF10112 Halogen_Hydrol: 5-bro 25.1 6.9E+02 0.015 24.8 10.6 19 583-601 155-173 (199)
50 PF07139 DUF1387: Protein of u 24.3 8.5E+02 0.018 26.8 11.3 126 475-630 151-278 (302)
51 PF09036 Bcr-Abl_Oligo: Bcr-Ab 23.8 36 0.00078 30.0 0.8 12 594-605 39-50 (79)
52 PF05659 RPW8: Arabidopsis bro 23.7 6.9E+02 0.015 24.3 10.9 20 449-468 2-21 (147)
53 PF04156 IncA: IncA protein; 23.1 7.1E+02 0.015 24.3 12.2 20 447-466 41-60 (191)
54 cd04759 Rib_hydrolase ADP-ribo 22.7 39 0.00084 35.7 1.0 29 609-638 204-233 (242)
55 PRK06926 flagellar motor prote 22.5 1.6E+02 0.0035 31.4 5.6 97 411-514 151-251 (271)
56 KOG0995 Centromere-associated 22.3 7.4E+02 0.016 29.5 11.0 95 508-631 239-338 (581)
57 KOG4010 Coiled-coil protein TP 22.2 1.7E+02 0.0036 30.2 5.2 74 530-606 97-170 (208)
58 TIGR00020 prfB peptide chain r 22.0 5.6E+02 0.012 28.7 9.7 29 525-556 40-68 (364)
59 KOG2150 CCR4-NOT transcription 21.8 9.2E+02 0.02 28.8 11.6 50 471-520 2-58 (575)
60 TIGR00153 conserved hypothetic 21.4 8.4E+02 0.018 24.5 13.4 64 531-595 75-139 (216)
61 PRK06746 peptide chain release 21.2 2E+02 0.0042 31.8 5.9 33 525-557 2-34 (326)
62 TIGR00844 c_cpa1 na(+)/h(+) an 21.1 1.1E+02 0.0024 37.5 4.4 95 372-468 212-314 (810)
63 PRK00182 tatB sec-independent 20.8 4.3E+02 0.0094 26.5 7.7 36 456-492 11-46 (160)
64 TIGR03818 MotA1 flagellar moto 20.4 3E+02 0.0064 29.6 7.0 55 411-469 165-223 (282)
65 PRK03100 sec-independent trans 20.4 4E+02 0.0086 26.0 7.2 36 456-492 11-46 (136)
66 COG1291 MotA Flagellar motor c 20.4 1.9E+02 0.0042 31.0 5.5 64 414-484 150-217 (266)
67 COG5185 HEC1 Protein involved 20.3 7.9E+02 0.017 28.9 10.4 67 548-619 541-612 (622)
68 PRK11644 sensory histidine kin 20.2 1.3E+03 0.028 26.2 15.0 46 417-462 223-270 (495)
No 1
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=99.78 E-value=1e-18 Score=195.61 Aligned_cols=216 Identities=19% Similarity=0.260 Sum_probs=172.3
Q ss_pred cccccCCCCCccccc-----cchh-hHHHHHHHhcceehhhHhhhhhhhhcccccccchhhHHHHHHHHHHHhh-cccc-
Q 006621 346 SWVCKDSPSPSVLPR-----QERQ-LSKVANVKAQGTVLGTVYGVLGCFLFEKLLPIRFLFLFPWFIFTSFLRH-GRMY- 417 (638)
Q Consensus 346 ~~~~~~~gyWA~l~v-----~~r~-T~~~a~~R~~GTvlGaV~G~l~~f~~~~~~~~~~l~L~~wi~fssfl~~-sr~Y- 417 (638)
.+++.+++|||.+++ +.+| +++.+.+|+.||++|+++|++..-+|++.|.+..+++.+|+++|.|+.. .|.|
T Consensus 20 ~~l~l~~p~WA~~tv~iV~qp~~G~~~~k~~~R~~GT~iGa~~~~~lv~~~~~~p~l~~~~lal~i~~c~~~~~~~~~~~ 99 (650)
T PF04632_consen 20 FWLQLPHPYWAAMTVFIVSQPSSGASLSKGLYRLIGTLIGAAAGLLLVALFPQSPLLFLLALALWIGLCLYLSLLDRNFR 99 (650)
T ss_pred HHhCCCCcHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 467789999999999 7777 9999999999999999999999988999999999999999999999987 4545
Q ss_pred ccccchhhhhheeeeeccc-cCCChhHHHHHHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHhhhhhh
Q 006621 418 GQGGGISAVIGAVLILGRK-SLGPPEEFAIARIVETFIGLTCTIIGELLFQSTRASTLAKSQLSKSLGTLHDCISSMTLR 496 (638)
Q Consensus 418 g~aggvaA~~aaivlLg~~-~~~~p~~fA~aRi~Et~IGl~~~i~Velli~P~RA~~lar~~L~~~l~~l~~c~~~~~~~ 496 (638)
+++..+|++|+++|.+..- +.++.-..++.|+.|+.||++|+.+|+.+++|.|+...+++++.+.++...+.+......
T Consensus 100 ~y~~~lag~T~~iv~~~~~~~p~~~f~~a~~R~~ei~iGi~~a~~v~~l~~P~~~~~~l~~~l~~~l~~~~~~~~~~l~~ 179 (650)
T PF04632_consen 100 SYAFMLAGYTAAIVALPAVGNPEQVFDLALWRVLEILIGILCATLVSMLFFPQRARRQLRRRLAQRLADLARWLAALLDG 179 (650)
T ss_pred hHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5555799999999887543 334455689999999999999999999999999999999999999999999888876432
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006621 497 ASQASLLHKQKRLKMHVNELGTLIGEADVEPNFGFLPFHSACYSKLLVSLVKMVHLLHFCSYSIGFLEQ 565 (638)
Q Consensus 497 ~~~~~~~~~~~~l~~~l~~l~~l~~EA~~EP~fW~~pF~~~~Y~Kvl~Sl~RmldLL~~~~~a~~~l~~ 565 (638)
..+.+ +.++++...+.+++.+...+..|..-++. ....++.+..++.+++..+..+.+.+..+..
T Consensus 180 ~~~~~--~~~~~l~~~~~~l~~~~~~~~~e~~~~~~--~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~ 244 (650)
T PF04632_consen 180 DPDPA--AERRRLARDIAALESLLSHARYESPRLRR--RRRRLRALQARLLRLLALLRSLARRLAALPD 244 (650)
T ss_pred Ccccc--hHHHHHHHHHHHHHHHHhhccccCchhHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 21111 16678888889999999999999964332 3455566666666666555555554444433
No 2
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=99.66 E-value=4.1e-14 Score=162.58 Aligned_cols=206 Identities=18% Similarity=0.110 Sum_probs=148.1
Q ss_pred ccccCCCCCccccc-----cchh-hHHHHHHHhcceehhhHhhhhhhhhcccccccchhhHHHHHHHHHHHhhccccccc
Q 006621 347 WVCKDSPSPSVLPR-----QERQ-LSKVANVKAQGTVLGTVYGVLGCFLFEKLLPIRFLFLFPWFIFTSFLRHGRMYGQG 420 (638)
Q Consensus 347 ~~~~~~gyWA~l~v-----~~r~-T~~~a~~R~~GTvlGaV~G~l~~f~~~~~~~~~~l~L~~wi~fssfl~~sr~Yg~a 420 (638)
++..++|||..+|+ +..+ |++.+..|+.||++|.++|+++.++++... . .+.++++.++..|....+.|+.+
T Consensus 402 ~l~l~~gyWi~lTv~~V~qP~~~~T~~R~~~Ri~GTl~G~llg~~l~~l~p~~~-~-~l~l~v~~~~~~~~~~~~~Y~~a 479 (701)
T TIGR01667 402 GTALHLGYWILLTTLFVCQPNYGATRLRLVQRIIGTVVGLVIGVALHFLIPSLE-G-QLTLMVITGVAFFAFRSKNYGWA 479 (701)
T ss_pred HhCCCcchHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH-H-HHHHHHHHHHHHHHHHHhhHHHH
Confidence 34459999999999 6666 999999999999999999999877766532 2 45666777776666655667664
Q ss_pred cchhhhhheeeeeccccCCChhHHHHHHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHhhhhh--h--
Q 006621 421 GGISAVIGAVLILGRKSLGPPEEFAIARIVETFIGLTCTIIGELLFQSTRASTLAKSQLSKSLGTLHDCISSMTL--R-- 496 (638)
Q Consensus 421 ggvaA~~aaivlLg~~~~~~p~~fA~aRi~Et~IGl~~~i~Velli~P~RA~~lar~~L~~~l~~l~~c~~~~~~--~-- 496 (638)
+..+|..++++-..-..++.++++.|+++|.||+++++++..++||.+....++.++.+.++...+-++.+.. .
T Consensus 480 --~~fiT~~vll~~~l~~~~~~~~a~~Rl~DTliG~~iA~~~~~llwP~w~~~~l~~~~~~al~a~~~yl~~il~~~~~~ 557 (701)
T TIGR01667 480 --TVFITLLVLLCFNLLGLDGEQYILPRLIDTLIGCLIAWGAVSYLWPDWQSRLLRKMLHDALEANQRYLRLILSQYPQG 557 (701)
T ss_pred --HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3344443333222222356678899999999999999999999999999999999999999998888876642 1
Q ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006621 497 -ASQASLLHKQKRLKMHVNELGTLIGEADVEPNFGFLPFHSACYSKLLVSLVKMVHLLHFCSYSIGFLEQ 565 (638)
Q Consensus 497 -~~~~~~~~~~~~l~~~l~~l~~l~~EA~~EP~fW~~pF~~~~Y~Kvl~Sl~RmldLL~~~~~a~~~l~~ 565 (638)
.++.+.+...++.....++++..+..+-.||... .+-++...+++.+.+.+..-+..|..
T Consensus 558 ~~~~~~yr~aRr~a~~a~a~l~~~~~~m~~EP~~~---------~~~~~~~~~ll~~~~~ll~~isal~a 618 (701)
T TIGR01667 558 KPDDLAYRIARRNAHNTDAALSTTLSNMMQEPAFN---------SHYLEDGFRLLTLSHTLLSYISALGA 618 (701)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc---------hhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1223446667778888899999999999999954 23344444555555554444444433
No 3
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=99.65 E-value=2.1e-15 Score=163.39 Aligned_cols=250 Identities=17% Similarity=0.137 Sum_probs=184.2
Q ss_pred CCCCCccccc-----cchh-hHHHHHHHhcceehhhHhhhhhhhhcccccc-----cchhhHHHHHHHHHHHhhc----c
Q 006621 351 DSPSPSVLPR-----QERQ-LSKVANVKAQGTVLGTVYGVLGCFLFEKLLP-----IRFLFLFPWFIFTSFLRHG----R 415 (638)
Q Consensus 351 ~~gyWA~l~v-----~~r~-T~~~a~~R~~GTvlGaV~G~l~~f~~~~~~~-----~~~l~L~~wi~fssfl~~s----r 415 (638)
.||.||.+|| ..-| |+....+|+.||++|.+.|.++..+....+. +-.+.+|++.++++|+|.. .
T Consensus 39 ~~~~WavlTVvvvfe~tvGatl~KG~nR~lGTl~aG~La~~~~~la~~~g~~~~~~~i~~~vFi~~~~atf~r~~P~~k~ 118 (406)
T PF11744_consen 39 QNAMWAVLTVVVVFEPTVGATLSKGLNRGLGTLLAGILAFGVSWLASLSGDPGEPIVIGISVFIIGFIATFVRFIPKIKA 118 (406)
T ss_pred hcchHHHhhhHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHhchhhhh
Confidence 7899999999 6677 9999999999999999999988877655432 5667778888889999974 2
Q ss_pred ccccccchhhhhheeeeeccccCCChhHHHHHHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHH----HHHh
Q 006621 416 MYGQGGGISAVIGAVLILGRKSLGPPEEFAIARIVETFIGLTCTIIGELLFQSTRASTLAKSQLSKSLGTLH----DCIS 491 (638)
Q Consensus 416 ~Yg~aggvaA~~aaivlLg~~~~~~p~~fA~aRi~Et~IGl~~~i~Velli~P~RA~~lar~~L~~~l~~l~----~c~~ 491 (638)
.|++++.|..+|=.+|.++.-..++....|..|+.-|.||+++.++|.++++|-.|+..+++.+.+.++.++ +|.+
T Consensus 119 rydYg~~Vf~LTf~lV~vs~yr~~~~~~~A~~R~~~I~iGv~i~l~vsi~IfPvwAg~~Lh~~~a~~leklA~~le~~v~ 198 (406)
T PF11744_consen 119 RYDYGGLVFILTFCLVAVSGYRTDEFLMLAVWRLLTIVIGVAICLLVSIFIFPVWAGEDLHKLTAKNLEKLANSLEGCVE 198 (406)
T ss_pred hhhHHHHHHHHHHHhheeecCCcchHHHHHHHHHHHHHHHHHHHHHHHHheeechhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 399999999999999999877778889999999999999999999999999999996665555555555555 5555
Q ss_pred hhhhhccHH----------HHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCC--CCchhHHHHHHHhHHHHHHHHHHHHHH
Q 006621 492 SMTLRASQA----------SLLHKQKRLKMHVNELGTLIGEADVEPNFGFL--PFHSACYSKLLVSLVKMVHLLHFCSYS 559 (638)
Q Consensus 492 ~~~~~~~~~----------~~~~~~~~l~~~l~~l~~l~~EA~~EP~fW~~--pF~~~~Y~Kvl~Sl~RmldLL~~~~~a 559 (638)
.+....... ..-+..|.+...-++-++++..|.-||..++- .+|-..|.||=+.+|+-+-.+..+
T Consensus 199 ~y~~~~~~~~~~~~~~~~~~~~~~yk~vl~Sk~~eesL~~~A~WEP~HG~f~f~~Pw~~Y~kig~~lR~cay~v~AL--- 275 (406)
T PF11744_consen 199 EYFKCSEDEILDYQQESDDPLLQGYKSVLNSKSQEESLANFARWEPPHGRFRFRHPWKQYLKIGALLRHCAYCVEAL--- 275 (406)
T ss_pred HHHhcchhcccccccccccHHHHhhhHHhCCcccHHHHhhhhhhcccccCCccCCcHHHHHHHHHHHHHHHHHHHHH---
Confidence 543211111 11122333333347789999999999998655 556699999988888777666555
Q ss_pred HHHHHHhhhhhccchhhhhhhccchhhHHHHHHhhhhhhhhHhhhhhhc
Q 006621 560 IGFLEQESQKIDKASWKEDVQKLDGDVKLVKEMACSSIKCFNDDITTIK 608 (638)
Q Consensus 560 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (638)
-+.+.++-|-. .++-..+.++......-.++.+|.+...|..++
T Consensus 276 ~gcl~seiq~p-----~~~r~~~~~~~~~~~~e~~kvLrel~~~ik~m~ 319 (406)
T PF11744_consen 276 HGCLNSEIQAP-----PELRQKFQEECTRVSSESAKVLRELSNSIKTMT 319 (406)
T ss_pred Hhccccccccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455565555 555566666666665555666666655555433
No 4
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=99.60 E-value=3e-15 Score=170.25 Aligned_cols=184 Identities=15% Similarity=0.195 Sum_probs=139.8
Q ss_pred cccccCCCCCccccc---c-----------chh-hHHHHHHHhcceehhhHhhhhhhhhcccccccchhhHHHHHHHHHH
Q 006621 346 SWVCKDSPSPSVLPR---Q-----------ERQ-LSKVANVKAQGTVLGTVYGVLGCFLFEKLLPIRFLFLFPWFIFTSF 410 (638)
Q Consensus 346 ~~~~~~~gyWA~l~v---~-----------~r~-T~~~a~~R~~GTvlGaV~G~l~~f~~~~~~~~~~l~L~~wi~fssf 410 (638)
.+++.+++|||++++ . .+| .++.+.+|+.||++|+++|++....|.+.|.+-.+++..|+++|.|
T Consensus 27 ~~l~L~~P~WA~~Tv~iv~~~~~~~~g~qp~~G~v~~K~~~Ri~GTliGa~~~l~l~~~f~~~p~l~~l~l~lWig~c~~ 106 (652)
T PRK10631 27 FHFQLETPRWAVLTAAIVAAGPAFAAGGEPFSGAIRYRGMLRIIGTFIGCIAALVIIIATIRAPLLMILLCCIWAGFCTW 106 (652)
T ss_pred HHCCCCCccHHHHHHHHHHcccccccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 356779999999987 1 245 7799999999999999999999999999898888999999999998
Q ss_pred Hh-hccc-cccccchhhhhheeeeeccccC-CChhHHHHHHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHH
Q 006621 411 LR-HGRM-YGQGGGISAVIGAVLILGRKSL-GPPEEFAIARIVETFIGLTCTIIGELLFQSTRASTLAKSQLSKSLGTLH 487 (638)
Q Consensus 411 l~-~sr~-Yg~aggvaA~~aaivlLg~~~~-~~p~~fA~aRi~Et~IGl~~~i~Velli~P~RA~~lar~~L~~~l~~l~ 487 (638)
+. +.|. ++++.++|.+|++++.+...++ ...-.+|+.|+.|+.|||+|+.+|+.+++|+++...++.++.+.++...
T Consensus 107 ~s~l~r~~~sY~~~LaGyTa~iI~~~~~~~p~~~f~~A~~R~~Ei~iGi~ca~lv~~l~~P~~~~~~l~~~l~~~~~~~~ 186 (652)
T PRK10631 107 ISSLVRVENSYAWGLAGYTALIIVITIQPEPLLTPQFAVERCSEIVIGIVCAILADLLFSPRSIKQEVDRELDSLLVAQY 186 (652)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHH
Confidence 64 2222 2445578889999888854432 2233699999999999999999999999999988777777666655543
Q ss_pred HHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 006621 488 DCISSMTLRASQASLLHKQKRLKMHVNELGTLIGEADVEPNF 529 (638)
Q Consensus 488 ~c~~~~~~~~~~~~~~~~~~~l~~~l~~l~~l~~EA~~EP~f 529 (638)
+-++........++.+..+.++-.++.+++.+...+..|..-
T Consensus 187 ~~~~~~l~~~~~~~~~~~~~~L~~di~~le~lr~~~~~e~~~ 228 (652)
T PRK10631 187 QLMQLCIKHGDKEEVDKAWGDLVRRTTALNGMRSNLMMESSR 228 (652)
T ss_pred HHHHHHhccCccchhhHHHHHHHHHHHHHHHHHHhhccCCcc
Confidence 333332111223455666788888888999998887777543
No 5
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.59 E-value=7.8e-13 Score=150.72 Aligned_cols=241 Identities=12% Similarity=0.064 Sum_probs=152.7
Q ss_pred ccCCCCCccccc-----cchh-hHHHHHHHhcceehhhHhhhhhhhh-ccccccc--chhhHHHHHHHHHHHh-hccccc
Q 006621 349 CKDSPSPSVLPR-----QERQ-LSKVANVKAQGTVLGTVYGVLGCFL-FEKLLPI--RFLFLFPWFIFTSFLR-HGRMYG 418 (638)
Q Consensus 349 ~~~~gyWA~l~v-----~~r~-T~~~a~~R~~GTvlGaV~G~l~~f~-~~~~~~~--~~l~L~~wi~fssfl~-~sr~Yg 418 (638)
..++|||+.+++ +..+ |++.+.+|+.||++|++.|.++.++ .+..... -.+.+++-+++..++. ....|+
T Consensus 372 ~w~~pyWamLTvvIVsqP~~GaT~sRa~~RiiGTliGallA~ll~v~l~P~l~~~~~Llllllp~~llg~wv~~~~~R~s 451 (683)
T PRK11427 372 DWEGIHTCMLTCVIVANPNVGSSYQKMVLRFGGAFCGAILALLFTLLVMPWLDNIVELLFVLAPIFLLGAWIATSSERSS 451 (683)
T ss_pred CCCccHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 348999999998 6666 9999999999999999999999844 4433222 1223334444444442 222355
Q ss_pred cccchhhhhheeeeeccc-cCCChhHHHHHHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHhhhhhhc
Q 006621 419 QGGGISAVIGAVLILGRK-SLGPPEEFAIARIVETFIGLTCTIIGELLFQSTRASTLAKSQLSKSLGTLHDCISSMTLRA 497 (638)
Q Consensus 419 ~aggvaA~~aaivlLg~~-~~~~p~~fA~aRi~Et~IGl~~~i~Velli~P~RA~~lar~~L~~~l~~l~~c~~~~~~~~ 497 (638)
+++..+.++..++.+-.- ...........|+.+|.+|++|+.++-.++||.+....+++.+.+.++.+.+.++......
T Consensus 452 Ya~~~ag~T~~li~L~~l~~p~~d~~~i~dRvl~tLLGi~iA~la~~lVwP~~~~~~L~~~l~~aLr~la~~l~~~~~~~ 531 (683)
T PRK11427 452 YIGTQMVVTFALATLENVFGPVYDLVEIRDRALGILIGTVVSAVIYTFVWPESEARTLPQKLAGALGMLSKVLRIPRQQE 531 (683)
T ss_pred HHHHHHHHHHHHHHhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 666667777666654111 1111123344699999999999999999999999889999999999999998887521100
Q ss_pred --cHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccchh
Q 006621 498 --SQASLLHKQKRLKMHVNELGTLIGEADVEPNFGFLPFHSACYSKLLVSLVKMVHLLHFCSYSIGFLEQESQKIDKASW 575 (638)
Q Consensus 498 --~~~~~~~~~~~l~~~l~~l~~l~~EA~~EP~fW~~pF~~~~Y~Kvl~Sl~RmldLL~~~~~a~~~l~~~~~~~~~~~~ 575 (638)
+..+.++.++.+-..+..++.....--.||+ .+.+.++.+..-..-+++..+-..++..+=+...|+.|+..=
T Consensus 532 ~~~~~~~~~~R~~l~~a~~~le~~~~rl~~Epq-----~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 606 (683)
T PRK11427 532 VTALRTYLQIRIGLHAAFNACEEMCQRVALERQ-----LDSEERALLIERSQTVIRQGRDILHAWDATWNSAQALDNALQ 606 (683)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCcc-----cchHHHHHHHHHHHHHHHHHHHHHHHhccchhhcccCCcccc
Confidence 0112223455666778999999999999993 444566665543333444444444444444455555543333
Q ss_pred hhhhhccchhhHHHHHHhh
Q 006621 576 KEDVQKLDGDVKLVKEMAC 594 (638)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~ 594 (638)
-+-.+.+...++.....+.
T Consensus 607 ~~~~~~~~~~~~~~~~~~~ 625 (683)
T PRK11427 607 PDRAGQFADALEKYAAGLA 625 (683)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 3333444444554444443
No 6
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=99.58 E-value=4.9e-13 Score=153.75 Aligned_cols=206 Identities=14% Similarity=0.060 Sum_probs=146.1
Q ss_pred ccccCCCCCccccc-----cchh-hHHHHHHHhcceehhhHhhhhhhhhcccccccchhhHHHHHHHHHHHhhccccccc
Q 006621 347 WVCKDSPSPSVLPR-----QERQ-LSKVANVKAQGTVLGTVYGVLGCFLFEKLLPIRFLFLFPWFIFTSFLRHGRMYGQG 420 (638)
Q Consensus 347 ~~~~~~gyWA~l~v-----~~r~-T~~~a~~R~~GTvlGaV~G~l~~f~~~~~~~~~~l~L~~wi~fssfl~~sr~Yg~a 420 (638)
++..++|||..+|+ +..+ |++.+..|+.||++|.++|++...+++.....-. +++-.+...|....+.|+.+
T Consensus 400 ~l~l~~gyWi~LTv~~V~qP~~~~T~~R~~~Ri~GTllG~~lg~~ll~l~p~~~~~l~--liv~~~~l~~~~~~~~Y~~a 477 (704)
T TIGR01666 400 FFGFNLGYWILLTTLFVCQPNYSATKVRLRQRIIGTLLGVVIGSPLLYFNPSLELQLV--LVVLTGVLFFAFRSNNYSFA 477 (704)
T ss_pred HhCCCCCchHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH--HHHHHHHHHHHHHHHhHHHH
Confidence 45569999999998 6666 9999999999999999999998877765332211 22221222222333456654
Q ss_pred cchhhhhheeeeeccccCCChhHHHHHHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHhhhhh-----
Q 006621 421 GGISAVIGAVLILGRKSLGPPEEFAIARIVETFIGLTCTIIGELLFQSTRASTLAKSQLSKSLGTLHDCISSMTL----- 495 (638)
Q Consensus 421 ggvaA~~aaivlLg~~~~~~p~~fA~aRi~Et~IGl~~~i~Velli~P~RA~~lar~~L~~~l~~l~~c~~~~~~----- 495 (638)
- ..+|..++++...- +++..+++.|+++|.||.++++++..++||......++..+.+.+++..+.++.+..
T Consensus 478 ~--~fiT~~vll~~~l~-g~~~~~~~~Rl~dTlIG~~iAl~a~~li~P~w~~~~l~~~~~~al~a~~~Yl~~vl~~~~~g 554 (704)
T TIGR01666 478 T--FFITLLVLLCFNVL-GEGAAVLLPRLLDTLIGCAIAWAAVSYIWPDWQYLQLDKVSHQALRANAVYLLHIISQYQFG 554 (704)
T ss_pred H--HHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHhHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 2 23344343332222 246678888999999999999999999999999999999999999998888877642
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 006621 496 RASQASLLHKQKRLKMHVNELGTLIGEADVEPNFGFLPFHSACYSKLLVSLVKMVHLLHFCSYSIGFLEQE 566 (638)
Q Consensus 496 ~~~~~~~~~~~~~l~~~l~~l~~l~~EA~~EP~fW~~pF~~~~Y~Kvl~Sl~RmldLL~~~~~a~~~l~~~ 566 (638)
..+..+.+...++.-...++++..+..+-.||. .|.+-++..-|++.+.+.+...+..|...
T Consensus 555 ~~~~~~yr~aRR~a~~~~a~l~~~~~~m~~EP~---------~~~~~~~~~~~ll~~~~~llsyisaLg~~ 616 (704)
T TIGR01666 555 KSDDLKYRIARRNAHNYDAALSTTVSNMNNEPV---------KYKAYLQKGFRLLKLNHSLLSYISALGAH 616 (704)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------cchhhHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 122345567788888899999999999999999 34455666666666666555555444443
No 7
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=99.24 E-value=1.2e-09 Score=123.15 Aligned_cols=461 Identities=14% Similarity=0.111 Sum_probs=243.1
Q ss_pred hhhhhHhh--hHHhhhhhcccCCCCCCcceeecccchhhheeeeeCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 006621 5 CLASAYRT--ACTIVGSITFYGPSSLRGQVTFPAFSYVTVILIVTDATLGDTLHGCWLALYATVQSIGPALLTMWLIGPA 82 (638)
Q Consensus 5 ~L~sa~Rt--AC~Ivg~~~~Y~P~~~r~~~~FPaFsYv~~vvIvsdaTlG~tlr~~w~a~~gt~~~l~~s~l~l~ligp~ 82 (638)
++.-++|| ||+++=.+..+ =.+..|.|.-+|++++ +-.+.|.++.-.+.=+.||+.|++.+++...+.+.+
T Consensus 1 ~~~~alr~~lA~~lAl~ia~~------l~l~~p~WA~~tv~iV-~qp~~G~~~~k~~~R~~GT~iGa~~~~~lv~~~~~~ 73 (650)
T PF04632_consen 1 RLRFALRTALAAMLALYIAFW------LQLPHPYWAAMTVFIV-SQPSSGASLSKGLYRLIGTLIGAAAGLLLVALFPQS 73 (650)
T ss_pred CHHHHHHHHHHHHHHHHHHHH------hCCCCcHHHHHHHHhh-ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 35568999 88887666665 3466778865555444 778999999999999999999999999999877544
Q ss_pred ccCc-hhhHHHHHHHHHHHhcCCCcchhhhHhhhcceEEEEEEEEecCCcccccceechhhhhhhHHHHHHHHHhhCCcc
Q 006621 83 RLTT-GTTALAVAIAAFFVALPEGTHLVAKRIALGQIVLTYVMGFVNGEHSGAVMLPVRVAASTAIGVLACVLALFLPYP 161 (638)
Q Consensus 83 ~~~~-~~~~~~val~afvV~lP~~~~lv~KRiAlgq~vivYv~~~in~~~t~~i~hpl~va~~talGv~a~lla~llP~P 161 (638)
..-- ...+.|+++..+...+-.....-.=-+|-=...|+-+....||.+ ....-+.-...+++|++++.+.-.+=+|
T Consensus 74 p~l~~~~lal~i~~c~~~~~~~~~~~~y~~~lag~T~~iv~~~~~~~p~~--~f~~a~~R~~ei~iGi~~a~~v~~l~~P 151 (650)
T PF04632_consen 74 PLLFLLALALWIGLCLYLSLLDRNFRSYAFMLAGYTAAIVALPAVGNPEQ--VFDLALWRVLEILIGILCATLVSMLFFP 151 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhcccCccH--HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3221 124566666666665433322211111111112333334445533 1112222347899999998877444346
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhHHHHHhhhhccchhhHHHHhhhchhhhhhhHHHHHHHhhccCcccch-hhhhhccccC
Q 006621 162 RLACYEVKWNYKQLADNASERPRLYVKALCAEDKSTALASISLAKSLTKSGTKHIQNIKRYQESMKWEI-PFKFLRSNYV 240 (638)
Q Consensus 162 rlA~~~vr~~~~~~~e~~~erlnl~vda~c~~d~~~~~~l~~qak~l~~a~~k~l~~i~~~~~d~~WEr-~~~~~~~~~~ 240 (638)
+=+..++++..++..+++.+.+.-..+.--.++. ..+++.... ..++........|. ....-+....
T Consensus 152 ~~~~~~l~~~l~~~l~~~~~~~~~~l~~~~~~~~--------~~~~l~~~~----~~l~~~~~~~~~e~~~~~~~~~~~~ 219 (650)
T PF04632_consen 152 QRARRQLRRRLAQRLADLARWLAALLDGDPDPAA--------ERRRLARDI----AALESLLSHARYESPRLRRRRRRLR 219 (650)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch--------HHHHHHHHH----HHHHHHHhhccccCchhHHHHHHHH
Confidence 6677888888888888888877666655444333 222222222 22333333334444 1111111111
Q ss_pred ChhhhhhhhccccchhhHHHH--------hHHHHHHHHHhhhhhcccCCCCCCCCcchhhhhcccCCcch--hccccchH
Q 006621 241 KPVKKFQYLEIPLRGMEMAEV--------LEELTCLTIKKVKSYQILCNSMSVPESNEECSLKNFRTIPT--ISQNLPFF 310 (638)
Q Consensus 241 ~~~~~l~~l~~~LRgMe~Alv--------l~~~i~l~l~~~~~~~~~~~~~~~~e~~~~~~l~~l~t~~~--~~~~lp~~ 310 (638)
.....+..+...++.++-.+. ...++...+.+.++...+.+.. ++..... +.++.... .....+--
T Consensus 220 ~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~la~~~~~~~~~--~~~~~l~--~~~~~~~~~~~~~~~~~~ 295 (650)
T PF04632_consen 220 ALQARLLRLLALLRSLARRLAALPDAPDAARLELAALLEELAAAAQRADLD--QAAAALR--QRIAALRPAASDDSDWQR 295 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHhhcccccccH--HHHHHHH--HHHhhcccccccchhhHH
Confidence 111222223333333333331 1111333343332210000000 0000000 11111000 01122223
Q ss_pred HHHHhHHhhcCCCC---C----CCCCC--C-cccccccccccc-ccc--------------cccc--CCCCCccccc---
Q 006621 311 FFLFCMKLLNCPMP---K----TDGSN--K-SCEEHVLSFKEA-WTS--------------WVCK--DSPSPSVLPR--- 360 (638)
Q Consensus 311 ~Flf~~~lf~~~~~---~----~~~~~--k-~~~~~~~~~~~~-~~~--------------~~~~--~~gyWA~l~v--- 360 (638)
..+..+....++.. . ..++. + ......+.+... .++ |+.. +.|.-+.+.+
T Consensus 296 ~l~~~l~~~L~~l~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~A~~~alra~la~~~~~l~Wi~t~W~~G~~~~~~~~v~ 375 (650)
T PF04632_consen 296 ALLARLADLLRDLIQALRSLRALRRPIPARRPFRFPLHRDWPLALRNALRAFLAILIAGLFWIATGWPSGATAVMMAAVV 375 (650)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Confidence 33344443333332 0 00000 0 000001111110 011 2222 5666654444
Q ss_pred ----cchh-hHHHHHHHhcceehhhHhhhhhhh-hcccccc--cchhhHHHHHHHHHHHhhccccccccchhhhhheeee
Q 006621 361 ----QERQ-LSKVANVKAQGTVLGTVYGVLGCF-LFEKLLP--IRFLFLFPWFIFTSFLRHGRMYGQGGGISAVIGAVLI 432 (638)
Q Consensus 361 ----~~r~-T~~~a~~R~~GTvlGaV~G~l~~f-~~~~~~~--~~~l~L~~wi~fssfl~~sr~Yg~aggvaA~~aaivl 432 (638)
+..+ .......++.|+++|++.|.++.| +.|+... .-.++|+|-+++..++..+..|...| +.-.+.-.++
T Consensus 376 ~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~vlP~~~~f~~L~l~l~~~l~~~~~~~~~p~~~~~g-~~~~v~f~~~ 454 (650)
T PF04632_consen 376 SSLFATLDNPAPALRLFLIGALLGAVLAFLYLFFVLPHLDGFPLLALVLAPFLFLGGLLMARPRTAYIG-LGFAVFFLLL 454 (650)
T ss_pred HHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHcCchHHHHH-HHHHHHHHHH
Confidence 4555 889999999999999999999887 5566543 23556667777777777766665543 3333334444
Q ss_pred eccccC--CChhHHHHHHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHhh
Q 006621 433 LGRKSL--GPPEEFAIARIVETFIGLTCTIIGELLFQSTRASTLAKSQLSKSLGTLHDCISS 492 (638)
Q Consensus 433 Lg~~~~--~~p~~fA~aRi~Et~IGl~~~i~Velli~P~RA~~lar~~L~~~l~~l~~c~~~ 492 (638)
++-.+. -|+.. .+-+..=+.+|++++.++-.+++|.++....|+-+.+..+.+.+....
T Consensus 455 ~~~~n~~~~d~~~-f~n~~la~l~G~~~a~l~~~li~p~~~~~~~rrl~~~~~~~l~~~~~~ 515 (650)
T PF04632_consen 455 LGPGNPYSYDFAT-FLNRALAILLGIVIAALVFRLIRPFSPEWRRRRLLRALRRDLARLARG 515 (650)
T ss_pred hcCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHhhc
Confidence 443332 22222 233777888999999999999999999988888888888887776664
No 8
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.06 E-value=5.6e-10 Score=127.70 Aligned_cols=197 Identities=14% Similarity=-0.031 Sum_probs=143.5
Q ss_pred ccccCCCCCccccc-----cchh-hHHHHHHHhcceehhhHhhhhhhhhcccccccchhhHHHHHHHHHHHhhccccccc
Q 006621 347 WVCKDSPSPSVLPR-----QERQ-LSKVANVKAQGTVLGTVYGVLGCFLFEKLLPIRFLFLFPWFIFTSFLRHGRMYGQG 420 (638)
Q Consensus 347 ~~~~~~gyWA~l~v-----~~r~-T~~~a~~R~~GTvlGaV~G~l~~f~~~~~~~~~~l~L~~wi~fssfl~~sr~Yg~a 420 (638)
.++.|+.||+..++ .-++ |...+++|+.||++|+...++..-++-..|.++.+++..|+++|.|+-+....|+.
T Consensus 49 ~l~~P~~a~a~~~vfivsqp~~g~t~~kai~r~vgt~lg~~~~vll~~~~v~~P~l~~l~ialw~~~~lyl~r~~rl~yv 128 (683)
T PRK11427 49 TFEIPFLALSLAVLFYGIQSNAFYTKFVAILFVVATVLEIGSLFLIYKWSYGYPLIRLIIAGPILMGCMFLMRTHRLGLV 128 (683)
T ss_pred HcCCCHHHHHHHHHHheeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhccchhHH
Confidence 45569999998876 5566 99999999999999999999988888888999999999999999999877767888
Q ss_pred cchhhhhheeeeeccccCCChhHHHHHHHHH-----HHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHhhhhh
Q 006621 421 GGISAVIGAVLILGRKSLGPPEEFAIARIVE-----TFIGLTCTIIGELLFQSTRASTLAKSQLSKSLGTLHDCISSMTL 495 (638)
Q Consensus 421 ggvaA~~aaivlLg~~~~~~p~~fA~aRi~E-----t~IGl~~~i~Velli~P~RA~~lar~~L~~~l~~l~~c~~~~~~ 495 (638)
+.++++|+ ++.++=..-.+ ..=...|..| +.+|++|.++|..+++|++...+++..+.+.++.-.+.+.+-
T Consensus 129 f~lag~ta-ii~~~f~~v~~-~~E~~~R~~e~~w~~i~~gi~ca~lV~~l~~P~~~~~~l~~~l~~~l~~a~~~l~~~-- 204 (683)
T PRK11427 129 FFAVAIVA-IYGQTFPAMLD-YPEVVVRLTLWCIVVGLYPTLLMTLIGVLWFPSRAINQMHQALNDRLDDAISHLTDS-- 204 (683)
T ss_pred HHHHHHHH-HHHhhcccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhCcCChHHHHHHHHHHHHHHHHHHhcCC--
Confidence 99999995 44333222223 2223899999 999999999999999999999999999988887544444431
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhHHHHHHHhHHHHHHHHH
Q 006621 496 RASQASLLHKQKRLKMHVNELGTLIGEADVEPNFGFLPFHSACYSKLLVSLVKMVHLLH 554 (638)
Q Consensus 496 ~~~~~~~~~~~~~l~~~l~~l~~l~~EA~~EP~fW~~pF~~~~Y~Kvl~Sl~RmldLL~ 554 (638)
+...++...+ ....++++.+.=|..|=.=|.- ..++-+.-..|..|++-+..
T Consensus 205 ---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 256 (683)
T PRK11427 205 ---LAPLPETRIE--REALALQKLNVFCLADDANWRT--QSAWWQSCVATVTYIYSTLN 256 (683)
T ss_pred ---Ccchhhhhhh--hhHHHHHHHHHHHhhccCCcHh--hHHHHHHHHHHHHHHHHHhc
Confidence 1222222111 3344455555555665553332 23455666677777765554
No 9
>COG4129 Predicted membrane protein [Function unknown]
Probab=99.04 E-value=4.4e-09 Score=112.03 Aligned_cols=213 Identities=16% Similarity=0.084 Sum_probs=137.5
Q ss_pred ccccccCCCCCccccc-----cchh-hHHHHHHHhcceehhhHhhhhhhhhcccccccchhhHHHHHHHHHHHhhccccc
Q 006621 345 TSWVCKDSPSPSVLPR-----QERQ-LSKVANVKAQGTVLGTVYGVLGCFLFEKLLPIRFLFLFPWFIFTSFLRHGRMYG 418 (638)
Q Consensus 345 ~~~~~~~~gyWA~l~v-----~~r~-T~~~a~~R~~GTvlGaV~G~l~~f~~~~~~~~~~l~L~~wi~fssfl~~sr~Yg 418 (638)
++|++.|+.+.|++++ +.+. |++.+.+|+.|+++|+++|+++..+++..+...++.++.-+.+++.++-
T Consensus 27 a~~l~~~~~~~A~i~AV~~l~~t~~~s~~~~~~r~~g~~iG~~~a~l~~~l~g~~~~~~~v~~~i~i~~~~~~~~----- 101 (332)
T COG4129 27 AHLLGLPQPAFAGISAVLCLSPTIKRSLKRALQRLLGNALGAILAVLFFLLFGQNPIAFGVVLLIIIPLLVLLKL----- 101 (332)
T ss_pred HHHhCCCchHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHhc-----
Confidence 4578889999999988 5555 9999999999999999999999999998888888888888888888776
Q ss_pred cccc-hhhhhheeeeeccccCCChhHHHHHHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHhhhhh--
Q 006621 419 QGGG-ISAVIGAVLILGRKSLGPPEEFAIARIVETFIGLTCTIIGELLFQSTRASTLAKSQLSKSLGTLHDCISSMTL-- 495 (638)
Q Consensus 419 ~agg-vaA~~aaivlLg~~~~~~p~~fA~aRi~Et~IGl~~~i~Velli~P~RA~~lar~~L~~~l~~l~~c~~~~~~-- 495 (638)
..|- .++++...++++ ...++...++ |+.-++||++.+++|.+++.|-. ...+..-.+......+-+.....
T Consensus 102 ~~g~~~~~~~~~~ii~~-~~~~~~~~~~--r~l~~~vG~~~a~lvn~~~~~~~--~~~~~~~~kv~~~~~~il~~~~~~l 176 (332)
T COG4129 102 ENGVVPITVGVLHILVA-AMIPLFLIFN--RFLLVFVGVGVAFLVNLVMPPPD--YELKLYRAKVEAILASILWEVASYL 176 (332)
T ss_pred ccchhHHHHHHHHHHHH-cccchhHHHH--HHHHHHHHHHHHHHHhhhcCCch--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5553 333344444443 3323333344 99999999999999999999965 22333322333333333333221
Q ss_pred h-ccHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 006621 496 R-ASQASLLHKQKRLKMHVNELGTLIGEADVEPNFGFLPFHSACYSKLLVSLVKMVHLLHFCSYSIGFLEQES 567 (638)
Q Consensus 496 ~-~~~~~~~~~~~~l~~~l~~l~~l~~EA~~EP~fW~~pF~~~~Y~Kvl~Sl~RmldLL~~~~~a~~~l~~~~ 567 (638)
. .++...+.....+..++.+++++.+=...|=+|=+..=..-.|-+++....|.+++..-....+...+-++
T Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~e~~~~k~~~~~~~~~~~~~rq~~~~~~~~~~l~~l~~~~~~~ 249 (332)
T COG4129 177 RDTESAELDKDLEALLRLLIKLAKLIAYRREENHFFKSSDYYWHYFSMRRRQVRILRRMLRVLNSLHRTSNLS 249 (332)
T ss_pred hcCCccccchhHHHHHHHHHHHHHHHHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 1 12233334456666777777777777777777744333344455555555444444443333333333333
No 10
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=98.88 E-value=1.1e-09 Score=98.38 Aligned_cols=113 Identities=19% Similarity=0.297 Sum_probs=83.5
Q ss_pred cccccCCCCCccccc-----cchh-hHHHHHHHhcceehhhHhhhhhhhhcccccccchhhHHHHHHHHHHHhhcccccc
Q 006621 346 SWVCKDSPSPSVLPR-----QERQ-LSKVANVKAQGTVLGTVYGVLGCFLFEKLLPIRFLFLFPWFIFTSFLRHGRMYGQ 419 (638)
Q Consensus 346 ~~~~~~~gyWA~l~v-----~~r~-T~~~a~~R~~GTvlGaV~G~l~~f~~~~~~~~~~l~L~~wi~fssfl~~sr~Yg~ 419 (638)
.++..++|||+.+++ +..+ |++.+..|+.||++|.++|.++...++.. ..-.+.++.+.+...|.++ +.|
T Consensus 7 ~~~~~~~~~W~~it~~~v~~~~~~~~~~~~~~Ri~Gt~iG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~y-- 82 (128)
T PF13515_consen 7 QWLGLPHGYWAPITVVSVLSPSYGATVNRAIQRILGTLIGVVLGLLLLYLFPGN-YVLILIVFLLMFLIFYFLS-KNY-- 82 (128)
T ss_pred HHHcCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHh-ccH--
Confidence 356669999999998 5555 99999999999999999999999888774 3333445555555555554 334
Q ss_pred ccchhhhhheeeeecc---ccCCChhHHHHHHHHHHHHHHHHHHHH
Q 006621 420 GGGISAVIGAVLILGR---KSLGPPEEFAIARIVETFIGLTCTIIG 462 (638)
Q Consensus 420 aggvaA~~aaivlLg~---~~~~~p~~fA~aRi~Et~IGl~~~i~V 462 (638)
.++..+++..++.+.. ..+.++.+.+..|+.++.+|+++++++
T Consensus 83 ~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~R~~~v~iG~~i~~~v 128 (128)
T PF13515_consen 83 AIAQIFITVMVVLLFSLIHPGNGDPWQLALERILDVLIGILIALLV 128 (128)
T ss_pred HHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHhC
Confidence 4455555555554443 236678889999999999999999874
No 11
>COG1289 Predicted membrane protein [Function unknown]
Probab=98.80 E-value=1.5e-07 Score=108.27 Aligned_cols=177 Identities=17% Similarity=0.190 Sum_probs=115.0
Q ss_pred cccCCCCCccccc-----cc-hh-hHHHHHHHhcceehhhHhhhhhhhhccccccc-chhhHHHHHHHHHHHhhcccccc
Q 006621 348 VCKDSPSPSVLPR-----QE-RQ-LSKVANVKAQGTVLGTVYGVLGCFLFEKLLPI-RFLFLFPWFIFTSFLRHGRMYGQ 419 (638)
Q Consensus 348 ~~~~~gyWA~l~v-----~~-r~-T~~~a~~R~~GTvlGaV~G~l~~f~~~~~~~~-~~l~L~~wi~fssfl~~sr~Yg~ 419 (638)
.+-++|||+.+++ .. .+ |.+.+.+|.-||++|.++|.++-++.+..... -.+.+++-+.+..+++.++ |+.
T Consensus 375 ~~w~~g~w~llt~~vV~~~~~~~~t~~r~~~ri~GTllg~~~g~~~l~~~~p~~~~~l~~l~~~~~l~~~~~~~~~-~~~ 453 (674)
T COG1289 375 LGWPHGYWILLTAAVVCQPNAYGATRQRARQRILGTLLGLLLGLLVLLLLLPLIPGLLLLLLLAALLFAAGIRLAK-YRL 453 (674)
T ss_pred hcCCccHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhcc-hhH
Confidence 4449999999988 22 66 99999999999999999999988876654433 2222222233333333433 665
Q ss_pred ccchhhhhheeeeeccccCCChhHHHHHHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHhhhhhhccH
Q 006621 420 GGGISAVIGAVLILGRKSLGPPEEFAIARIVETFIGLTCTIIGELLFQSTRASTLAKSQLSKSLGTLHDCISSMTLRASQ 499 (638)
Q Consensus 420 aggvaA~~aaivlLg~~~~~~p~~fA~aRi~Et~IGl~~~i~Velli~P~RA~~lar~~L~~~l~~l~~c~~~~~~~~~~ 499 (638)
++.-..++...... -...++..+...|..++.||.+++++...++||......++....+.++...+-+..+.+....
T Consensus 454 a~~~i~l~v~~~~~--l~~~~~~~~~~~r~~d~~iG~lIa~~~a~~v~~~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~~ 531 (674)
T COG1289 454 ATLGITLLVLFLVG--LLGSNGPDYDLPRFLDTLLGSLIALALAFLVWPLWRPRRLRRALRRALRALRRDLASALSREPT 531 (674)
T ss_pred HHHHHHHHHHHHHH--HcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHhcCCc
Confidence 55322222221111 1223678899999999999999999999999997777777777777777777777766431110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 006621 500 ASLLHKQKRLKMHVNELGTLIGEADVEPNFG 530 (638)
Q Consensus 500 ~~~~~~~~~l~~~l~~l~~l~~EA~~EP~fW 530 (638)
.. + +.......+.+.....-+..||..+
T Consensus 532 ~~--~-~~~~~~~~~~l~~~~~~~~~~p~~~ 559 (674)
T COG1289 532 GR--E-RRFEHNADDALSQLLNLMASEPAVI 559 (674)
T ss_pred cc--h-hhhhhccHHHHHHHHHHHhcCCchh
Confidence 11 2 3333344455666666667788753
No 12
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=98.56 E-value=3.1e-07 Score=100.44 Aligned_cols=245 Identities=18% Similarity=0.171 Sum_probs=161.9
Q ss_pred hhhhhHhh--hHHhhhhhcccCCCCCCcceeecccchhhheeeeeCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhc--
Q 006621 5 CLASAYRT--ACTIVGSITFYGPSSLRGQVTFPAFSYVTVILIVTDATLGDTLHGCWLALYATVQSIGPALLTMWLIG-- 80 (638)
Q Consensus 5 ~L~sa~Rt--AC~Ivg~~~~Y~P~~~r~~~~FPaFsYv~~vvIvsdaTlG~tlr~~w~a~~gt~~~l~~s~l~l~lig-- 80 (638)
|..-++|. |.+||.+.-..+|.+. ..-..--|. +.||+++-+.|+|.||.---.=..||+.|.+.+++..++..
T Consensus 10 r~~~~lkvglal~lvsl~~~~~~~~~-~~~~~~~Wa-vlTVvvvfe~tvGatl~KG~nR~lGTl~aG~La~~~~~la~~~ 87 (406)
T PF11744_consen 10 RVIHSLKVGLALTLVSLLYFVGPLYD-GFGQNAMWA-VLTVVVVFEPTVGATLSKGLNRGLGTLLAGILAFGVSWLASLS 87 (406)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhh-hhhhcchHH-HhhhHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55567777 7789988877777652 222233343 33556666789999999999999999999999999888871
Q ss_pred ccccCchhhHHHHHHHHHHHhcCCCcchhhhHhhhcceEE--EEEEEEecCCcccccceec-hhhhhhhHHHHHHHHHhh
Q 006621 81 PARLTTGTTALAVAIAAFFVALPEGTHLVAKRIALGQIVL--TYVMGFVNGEHSGAVMLPV-RVAASTAIGVLACVLALF 157 (638)
Q Consensus 81 p~~~~~~~~~~~val~afvV~lP~~~~lv~KRiAlgq~vi--vYv~~~in~~~t~~i~hpl-~va~~talGv~a~lla~l 157 (638)
++.+..-.....+++.+|+..+....+.+++|+-.|..+- -|.+.-+-+-+++.+++-. .=...+++|++.|++.-+
T Consensus 88 g~~~~~~~i~~~vFi~~~~atf~r~~P~~k~rydYg~~Vf~LTf~lV~vs~yr~~~~~~~A~~R~~~I~iGv~i~l~vsi 167 (406)
T PF11744_consen 88 GDPGEPIVIGISVFIIGFIATFVRFIPKIKARYDYGGLVFILTFCLVAVSGYRTDEFLMLAVWRLLTIVIGVAICLLVSI 167 (406)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHhheeecCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333356667777788888888888999998886521 1221112233444443322 222667999999999999
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHhhhHHHHHhhhhccchh------------hHHHHhhhchhhhhhhHHHHHHHhhccC
Q 006621 158 LPYPRLACYEVKWNYKQLADNASERPRLYVKALCAEDKST------------ALASISLAKSLTKSGTKHIQNIKRYQES 225 (638)
Q Consensus 158 lP~PrlA~~~vr~~~~~~~e~~~erlnl~vda~c~~d~~~------------~~~l~~qak~l~~a~~k~l~~i~~~~~d 225 (638)
+-||.+|..++.+....-.+.+.+-+.-.++.|+..+... ..+.++-.++ -++.+++.+.
T Consensus 168 ~IfPvwAg~~Lh~~~a~~leklA~~le~~v~~y~~~~~~~~~~~~~~~~~~~~~~yk~vl~S--------k~~eesL~~~ 239 (406)
T PF11744_consen 168 FIFPVWAGEDLHKLTAKNLEKLANSLEGCVEEYFKCSEDEILDYQQESDDPLLQGYKSVLNS--------KSQEESLANF 239 (406)
T ss_pred heeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccccccccccHHHHhhhHHhCC--------cccHHHHhhh
Confidence 9999999999999999999999999999999998863322 1111111111 1356677888
Q ss_pred cccch-hhhh-hccccCChhhhhhhhccccchhhHHH
Q 006621 226 MKWEI-PFKF-LRSNYVKPVKKFQYLEIPLRGMEMAE 260 (638)
Q Consensus 226 ~~WEr-~~~~-~~~~~~~~~~~l~~l~~~LRgMe~Al 260 (638)
.+||+ -++| ||.-+++|.| ++.+.-..--+=+|+
T Consensus 240 A~WEP~HG~f~f~~Pw~~Y~k-ig~~lR~cay~v~AL 275 (406)
T PF11744_consen 240 ARWEPPHGRFRFRHPWKQYLK-IGALLRHCAYCVEAL 275 (406)
T ss_pred hhhcccccCCccCCcHHHHHH-HHHHHHHHHHHHHHH
Confidence 99999 4432 4433345543 233333333344444
No 13
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=98.51 E-value=1e-07 Score=90.01 Aligned_cols=114 Identities=18% Similarity=0.173 Sum_probs=85.4
Q ss_pred ccccccCCCCCccccc------cchhhHHHHHHHhcceehhhHhhhhhhhhcccccccchhhHHHHHHHHHHHhhccccc
Q 006621 345 TSWVCKDSPSPSVLPR------QERQLSKVANVKAQGTVLGTVYGVLGCFLFEKLLPIRFLFLFPWFIFTSFLRHGRMYG 418 (638)
Q Consensus 345 ~~~~~~~~gyWA~l~v------~~r~T~~~a~~R~~GTvlGaV~G~l~~f~~~~~~~~~~l~L~~wi~fssfl~~sr~Yg 418 (638)
.+|++.+++++|++++ +..+|++.+.+|+.|+++|.++|.++..+++..+..-.+.++.-+..+..++.
T Consensus 21 a~~l~~~~~~~A~i~Ail~~q~T~~~S~~~~~~Ri~~~~iG~~~a~~~~~~~g~~~~~~~l~v~i~i~~~~~l~~----- 95 (141)
T PF06081_consen 21 AQLLGLQYPFFAPIAAILSMQPTVYRSLKQGLNRILGTLIGALLALLFFLILGYNPLSIGLAVIITIPICNWLKL----- 95 (141)
T ss_pred HHHHCCCchHHHHHHHhheeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHhCC-----
Confidence 3467779999999888 44449999999999999999999999888877555555666666777777766
Q ss_pred cccc-hhhhhheeeeeccccCCChhHHHHHHHHHHHHHHHHHHHHHhhc
Q 006621 419 QGGG-ISAVIGAVLILGRKSLGPPEEFAIARIVETFIGLTCTIIGELLF 466 (638)
Q Consensus 419 ~agg-vaA~~aaivlLg~~~~~~p~~fA~aRi~Et~IGl~~~i~Velli 466 (638)
..|. +++++. +.++.. ..+++. ++..|+.||+||++++++|..++
T Consensus 96 ~~~~~~a~v~~-~~i~~~-~~~~~~-~~~~r~l~t~iG~~va~lVN~~~ 141 (141)
T PF06081_consen 96 GEGIIVAAVTF-VHILLS-GSDSFS-YALNRVLLTLIGIGVALLVNLLM 141 (141)
T ss_pred CCeehHHHHHH-HHHHHc-CCccHH-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 3343 455544 444432 233444 49999999999999999998864
No 14
>COG1289 Predicted membrane protein [Function unknown]
Probab=97.79 E-value=0.0003 Score=81.34 Aligned_cols=137 Identities=16% Similarity=0.159 Sum_probs=102.5
Q ss_pred ccccCCCCCccccc-----cchh-hHHHHHHHhcceehhhHhhhhhhhhcccccccchhhHHHHHHHHHHHhhc--cccc
Q 006621 347 WVCKDSPSPSVLPR-----QERQ-LSKVANVKAQGTVLGTVYGVLGCFLFEKLLPIRFLFLFPWFIFTSFLRHG--RMYG 418 (638)
Q Consensus 347 ~~~~~~gyWA~l~v-----~~r~-T~~~a~~R~~GTvlGaV~G~l~~f~~~~~~~~~~l~L~~wi~fssfl~~s--r~Yg 418 (638)
+++.+.++|+..++ +..| -++...+|.-||.+|..++++..-.+-+.|..-.+++-.|+++|...... ....
T Consensus 30 ~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~rli~tlig~~~~~~~~~~~~~~p~~f~~~~~~~~~l~~~~~~~~~~~~~ 109 (674)
T COG1289 30 LLGLPQPSWAVSTVAIVSAPDSGAVLSKGLKRLIGTLIGFAVALLLVALLAQEPWLFLLLLTLWLGLCTAIGSLYRTIAS 109 (674)
T ss_pred HcCCCCccHHHHHHHHHhCcCCCCHHHhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence 45669999998888 3455 88999999999999999999888665565665558999999998776542 1123
Q ss_pred cccchhhhhheeeeeccccCCCh---hHHHHHHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHH
Q 006621 419 QGGGISAVIGAVLILGRKSLGPP---EEFAIARIVETFIGLTCTIIGELLFQSTRASTLAKSQLSKSLG 484 (638)
Q Consensus 419 ~aggvaA~~aaivlLg~~~~~~p---~~fA~aRi~Et~IGl~~~i~Velli~P~RA~~lar~~L~~~l~ 484 (638)
++..+|.+|++++. -......| ...|+.|.+|+.+|+.|+-.+.+...|++....+...+....+
T Consensus 110 ~a~~la~yT~~~~~-~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 177 (674)
T COG1289 110 YAFVLAGYTALIIG-PAPAIPEPELLFDGAVWRVVEILLGILCAPVVPLLESPSRLYQALANYLEAKSR 177 (674)
T ss_pred HHHHHHHHHHHHhc-cccccccHHHHHHHHHHHHHHHHHHHHHhccchHhhhHHHHHHHHHHHHHHHHh
Confidence 34468888888887 22234444 3588889999999999999999998888776666555444443
No 15
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=97.64 E-value=0.0023 Score=70.93 Aligned_cols=214 Identities=12% Similarity=0.130 Sum_probs=141.3
Q ss_pred CCCCCccccc------cchh-hHHHHHHHhcceehhhHhhhhhhhhcccc-----------------------c------
Q 006621 351 DSPSPSVLPR------QERQ-LSKVANVKAQGTVLGTVYGVLGCFLFEKL-----------------------L------ 394 (638)
Q Consensus 351 ~~gyWA~l~v------~~r~-T~~~a~~R~~GTvlGaV~G~l~~f~~~~~-----------------------~------ 394 (638)
..||-..+.+ ..++ .+..+..=+-|+.+|..+|.+..+.-.+. +
T Consensus 44 ~~~yl~~i~~~~~~p~~~~~~~~~~~~~~~~g~~~g~~~~~l~~~~a~~aR~~~t~a~l~~~~~~~~~~~s~~~~~~~~~ 123 (459)
T PF10337_consen 44 TAGYLAPIISVIVPPGRPRGKFLEAMILLLLGVCLGWAWGLLAMYIAVAARPHDTQARLQQLQQSAGACTSGPNPAACAQ 123 (459)
T ss_pred chhHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHhccccCCCChhHHHH
Confidence 6788887666 4444 78888888999999999998765543211 0
Q ss_pred ---------ccch-hhHHHHHHHHHHHhh-ccccccccchhhhhheeee---eccccCC---ChhHHHHHHHHHHHHHHH
Q 006621 395 ---------PIRF-LFLFPWFIFTSFLRH-GRMYGQGGGISAVIGAVLI---LGRKSLG---PPEEFAIARIVETFIGLT 457 (638)
Q Consensus 395 ---------~~~~-l~L~~wi~fssfl~~-sr~Yg~aggvaA~~aaivl---Lg~~~~~---~p~~fA~aRi~Et~IGl~ 457 (638)
..+- .+..+|+++..|+-. -|.+.|......+.+.|++ +-.-... .+..+...=+.=..+|++
T Consensus 124 ~~i~~G~~~~a~~saV~av~l~~~i~~~~~lRa~~p~~~~~~I~~~I~~~i~~t~g~~~p~~~~~~l~~~ll~P~~ig~a 203 (459)
T PF10337_consen 124 QLIFDGFFYDARASAVFAVFLFVFIYFHGWLRAKNPKLNFPVIFGSIFVDIFLTYGPLFPTFFAYTLGKTLLKPFLIGIA 203 (459)
T ss_pred HhhcccceecchHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHhCcCcCcchHHHHHHHHHHHHHHHHH
Confidence 0011 455566554333322 3445565544444443333 3211111 233444444455679999
Q ss_pred HHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHhhhh-----hhc---cH----HHHHHHHHHHHHHHHHHHHHHhhhhc
Q 006621 458 CTIIGELLFQSTRASTLAKSQLSKSLGTLHDCISSMT-----LRA---SQ----ASLLHKQKRLKMHVNELGTLIGEADV 525 (638)
Q Consensus 458 ~~i~Velli~P~RA~~lar~~L~~~l~~l~~c~~~~~-----~~~---~~----~~~~~~~~~l~~~l~~l~~l~~EA~~ 525 (638)
++++|.++|+|...+......+.+.++.++++++.-. ... .. +.+++...+++..+..++.-+.++..
T Consensus 204 i~~~vslliFP~sss~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~l~~~l~~~~~ 283 (459)
T PF10337_consen 204 IALVVSLLIFPESSSHVVLKSMEDYLRLLKKALDAQRNFLQSSEPSDEFDAKSLKKLKATKAKLRALYAKLQAALRFLKL 283 (459)
T ss_pred HHHHHheeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999998888888888888888888888642 111 11 44556678888888999999999999
Q ss_pred CCCCCCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 006621 526 EPNFGFLPFHSACYSKLLVSLVKMVHLLHFCSYSIGFLEQE 566 (638)
Q Consensus 526 EP~fW~~pF~~~~Y~Kvl~Sl~RmldLL~~~~~a~~~l~~~ 566 (638)
|=.+ ..++.+-|.++...++++.--+.-+.+....+...
T Consensus 284 Eis~--grl~~~Dl~~i~~~lr~l~~~~~gL~~~~~~~~~~ 322 (459)
T PF10337_consen 284 EISY--GRLSPDDLKPIFSLLRSLMIPLSGLSSFCDLFQRL 322 (459)
T ss_pred hHee--ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9884 45889999999999998887666666555555433
No 16
>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains. Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].
Probab=97.49 E-value=0.0016 Score=66.03 Aligned_cols=97 Identities=25% Similarity=0.310 Sum_probs=81.2
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHhhhhhh----c-c---H-----HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCC
Q 006621 467 QSTRASTLAKSQLSKSLGTLHDCISSMTLR----A-S---Q-----ASLLHKQKRLKMHVNELGTLIGEADVEPNFGFLP 533 (638)
Q Consensus 467 ~P~RA~~lar~~L~~~l~~l~~c~~~~~~~----~-~---~-----~~~~~~~~~l~~~l~~l~~l~~EA~~EP~fW~~p 533 (638)
.|.+|+..+|..|+.++..+.+-+..+.+. . + . ...++.-.++...++.++.+++-+.-||.+ +-|
T Consensus 2 ~P~Sar~~vRk~La~~l~~l~~~Y~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~l~~~k~Ep~l-~G~ 80 (229)
T PF10334_consen 2 RPPSARRHVRKTLASTLSELGDLYSLVVSFWSRRLDNPDGHIDAEEDAIRKRFLKLQQSLNSLRTLLAFAKFEPSL-KGR 80 (229)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCC-CCC
Confidence 478899999999999999999888877531 0 1 0 123344577888999999999999999998 899
Q ss_pred CchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 006621 534 FHSACYSKLLVSLVKMVHLLHFCSYSIGFLE 564 (638)
Q Consensus 534 F~~~~Y~Kvl~Sl~RmldLL~~~~~a~~~l~ 564 (638)
||.+.|.++++++.+|+|++..+..+...++
T Consensus 81 FP~~~Y~~l~~~~~~il~~l~~l~~~~~~l~ 111 (229)
T PF10334_consen 81 FPKETYQRLLELCQNILDLLSLLSYVSTRLE 111 (229)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999988887773
No 17
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=97.31 E-value=0.0078 Score=62.65 Aligned_cols=136 Identities=18% Similarity=0.204 Sum_probs=92.8
Q ss_pred HhhhhhhhhcccccccchhhHHHHHHHHHHHhhccccccccc---hhhhhheeeeeccccCCChhHHHHHHHHHHHHHHH
Q 006621 381 VYGVLGCFLFEKLLPIRFLFLFPWFIFTSFLRHGRMYGQGGG---ISAVIGAVLILGRKSLGPPEEFAIARIVETFIGLT 457 (638)
Q Consensus 381 V~G~l~~f~~~~~~~~~~l~L~~wi~fssfl~~sr~Yg~agg---vaA~~aaivlLg~~~~~~p~~fA~aRi~Et~IGl~ 457 (638)
+...++.+.++ .+.+-.++++++.++++++.- ||+.++ .++..++++.++.... .| -++.+..=.++|-+
T Consensus 11 ~~s~~~~l~~~-~~~l~~~~~~~~~F~~~ml~~---~G~r~~~i~~~~Ll~~v~t~~~~~~-~~--~~~~~~~l~~~Ggl 83 (284)
T PF12805_consen 11 LASLLVGLLFP-YPWLLILVLALLTFFFGMLGV---YGPRAATIGFATLLVAVYTMAGPSP-GP--EALEHALLFLAGGL 83 (284)
T ss_pred HHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHhCCCc-ch--HHHHHHHHHHHHHH
Confidence 33333334333 355666777777777777766 888774 4455555555543332 22 56677788999999
Q ss_pred HHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHhhhhhh---c---cHH----HHHHHHHHHHHHHHHHHHHHhhh
Q 006621 458 CTIIGELLFQSTRASTLAKSQLSKSLGTLHDCISSMTLR---A---SQA----SLLHKQKRLKMHVNELGTLIGEA 523 (638)
Q Consensus 458 ~~i~Velli~P~RA~~lar~~L~~~l~~l~~c~~~~~~~---~---~~~----~~~~~~~~l~~~l~~l~~l~~EA 523 (638)
.+++..+++||-++..-.|..+.+++..+.+-++.-+.. . +.+ ++-..|.++.+++++.++.+-.-
T Consensus 84 wy~~lsl~~~~l~p~r~~rqaLa~~y~~lA~yl~~ka~~~~p~~~~~~~~~~~~l~~~q~~v~~~~~~~R~~l~~~ 159 (284)
T PF12805_consen 84 WYLLLSLLWWPLRPYRPVRQALAECYRALADYLRAKARFFDPDQHDDDEQLRIELAQQQIKVNEALEQARELLLRR 159 (284)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998875321 1 111 23345677777777777776554
No 18
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=96.73 E-value=0.58 Score=54.96 Aligned_cols=170 Identities=16% Similarity=0.093 Sum_probs=96.6
Q ss_pred hhhhHhhhHHhhhhhcccCCCCCCcceeecccchhhheeeee---------CCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006621 6 LASAYRTACTIVGSITFYGPSSLRGQVTFPAFSYVTVILIVT---------DATLGDTLHGCWLALYATVQSIGPALLTM 76 (638)
Q Consensus 6 L~sa~RtAC~Ivg~~~~Y~P~~~r~~~~FPaFsYv~~vvIvs---------daTlG~tlr~~w~a~~gt~~~l~~s~l~l 76 (638)
+.=++|| +++.++.+| -...=.+.-|-|.=.| +.||+ ..+-|.++.-.+.=+.||..|.+.+++..
T Consensus 9 ~~falk~--~lA~~LAL~--ia~~l~L~~P~WA~~T-v~iv~~~~~~~~g~qp~~G~v~~K~~~Ri~GTliGa~~~l~l~ 83 (652)
T PRK10631 9 LRFAVKL--AFAIVLALF--VGFHFQLETPRWAVLT-AAIVAAGPAFAAGGEPFSGAIRYRGMLRIIGTFIGCIAALVII 83 (652)
T ss_pred HHHHHHH--HHHHHHHHH--HHHHCCCCCccHHHHH-HHHHHcccccccccCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666 233333344 2222345567776555 44555 45789998777777999999999999999
Q ss_pred hhhcccccCc-hhhHHHHHHHHHHHhcCCCcchhhhHhhhcceEEE--EEEEEecCCcccccceechhh--hhhhHHHHH
Q 006621 77 WLIGPARLTT-GTTALAVAIAAFFVALPEGTHLVAKRIALGQIVLT--YVMGFVNGEHSGAVMLPVRVA--ASTAIGVLA 151 (638)
Q Consensus 77 ~ligp~~~~~-~~~~~~val~afvV~lP~~~~lv~KRiAlgq~viv--Yv~~~in~~~t~~i~hpl~va--~~talGv~a 151 (638)
++.+.+..-- -..+.|+.+.+++-.+-.. +..=-+.++..|.. =+...-||.. ++. ..+. .-+++|+++
T Consensus 84 ~~f~~~p~l~~l~l~lWig~c~~~s~l~r~--~~sY~~~LaGyTa~iI~~~~~~~p~~---~f~-~A~~R~~Ei~iGi~c 157 (652)
T PRK10631 84 IATIRAPLLMILLCCIWAGFCTWISSLVRV--ENSYAWGLAGYTALIIVITIQPEPLL---TPQ-FAVERCSEIVIGIVC 157 (652)
T ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHhccCCchH---HHH-HHHHHHHHHHHHHHH
Confidence 9875333111 1244566666655544322 11222223322211 1122334422 211 1222 678999999
Q ss_pred HHHHhhCCcchhhHHHHHHHHHHHHHHHHhhhHHH
Q 006621 152 CVLALFLPYPRLACYEVKWNYKQLADNASERPRLY 186 (638)
Q Consensus 152 ~lla~llP~PrlA~~~vr~~~~~~~e~~~erlnl~ 186 (638)
+.+...+=.|+=+...+++..++...+..+.+...
T Consensus 158 a~lv~~l~~P~~~~~~l~~~l~~~~~~~~~~~~~~ 192 (652)
T PRK10631 158 AILADLLFSPRSIKQEVDRELDSLLVAQYQLMQLC 192 (652)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99885555567677788888777777776665533
No 19
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=96.69 E-value=0.0061 Score=71.49 Aligned_cols=141 Identities=16% Similarity=0.119 Sum_probs=96.7
Q ss_pred heeeeeCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCchhhHHHHHHHHHHHhcCCCcchhhhHhhhcceEEE
Q 006621 42 VILIVTDATLGDTLHGCWLALYATVQSIGPALLTMWLIGPARLTTGTTALAVAIAAFFVALPEGTHLVAKRIALGQIVLT 121 (638)
Q Consensus 42 ~vvIvsdaTlG~tlr~~w~a~~gt~~~l~~s~l~l~ligp~~~~~~~~~~~val~afvV~lP~~~~lv~KRiAlgq~viv 121 (638)
|+++|.-.+.|.|..-.++=+.||+.|++.+++.++++ |.. ......+.++.++.. -..+++++++.+.+.
T Consensus 414 Tv~~V~qP~~~~T~~R~~~Ri~GTl~G~llg~~l~~l~-p~~---~~~l~l~v~~~~~~~-----~~~~~~Y~~a~~fiT 484 (701)
T TIGR01667 414 TTLFVCQPNYGATRLRLVQRIIGTVVGLVIGVALHFLI-PSL---EGQLTLMVITGVAFF-----AFRSKNYGWATVFIT 484 (701)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcH---HHHHHHHHHHHHHHH-----HHHHhhHHHHHHHHH
Confidence 66777778999999999999999999999998877665 432 112233333333222 234567776644221
Q ss_pred -EE-EEEecCCcccccceechhhhhhhHHHHHHHHHhhCCcchhhHHHHHHHHHHHHHHHHhhhHHHHHhhhh
Q 006621 122 -YV-MGFVNGEHSGAVMLPVRVAASTAIGVLACVLALFLPYPRLACYEVKWNYKQLADNASERPRLYVKALCA 192 (638)
Q Consensus 122 -Yv-~~~in~~~t~~i~hpl~va~~talGv~a~lla~llP~PrlA~~~vr~~~~~~~e~~~erlnl~vda~c~ 192 (638)
+| +.+ |-...+...--+.=..-|.+|.+.++++..+-+|.-+.+++++..+...+...+-++.+++.|-.
T Consensus 485 ~~vll~~-~l~~~~~~~~a~~Rl~DTliG~~iA~~~~~llwP~w~~~~l~~~~~~al~a~~~yl~~il~~~~~ 556 (701)
T TIGR01667 485 LLVLLCF-NLLGLDGEQYILPRLIDTLIGCLIAWGAVSYLWPDWQSRLLRKMLHDALEANQRYLRLILSQYPQ 556 (701)
T ss_pred HHHHHHH-hhcccchhHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 11 211 21111111100112367999999999999999999999999999999999999999999999865
No 20
>COG4129 Predicted membrane protein [Function unknown]
Probab=95.92 E-value=0.087 Score=57.01 Aligned_cols=168 Identities=13% Similarity=0.159 Sum_probs=97.9
Q ss_pred hhhHhh-hHHhhhhhcccCCCCCCcceeecccchhhheeeeeC-CChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 006621 7 ASAYRT-ACTIVGSITFYGPSSLRGQVTFPAFSYVTVILIVTD-ATLGDTLHGCWLALYATVQSIGPALLTMWLIGPARL 84 (638)
Q Consensus 7 ~sa~Rt-AC~Ivg~~~~Y~P~~~r~~~~FPaFsYv~~vvIvsd-aTlG~tlr~~w~a~~gt~~~l~~s~l~l~ligp~~~ 84 (638)
..|.|| --.|+.++..| +-+|+-.|.-.+.+...|+|= .|..++++..|+-+.|+..|++++++.+.+.|.+-+
T Consensus 8 ~ig~RtlKt~ia~~La~~----ia~~l~~~~~~~A~i~AV~~l~~t~~~s~~~~~~r~~g~~iG~~~a~l~~~l~g~~~~ 83 (332)
T COG4129 8 KIGARTLKTGLAAGLALL----IAHLLGLPQPAFAGISAVLCLSPTIKRSLKRALQRLLGNALGAILAVLFFLLFGQNPI 83 (332)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHhCCCchHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHH
Confidence 367788 33333334444 334666666555776666775 599999999999999999999999999999986655
Q ss_pred CchhhHHHHHHHHHHHhcCCCcchhhhHhhhcceEEEEEEEEecCCcccccceechhhhhhhHHHHHHHHH-hhCCcchh
Q 006621 85 TTGTTALAVAIAAFFVALPEGTHLVAKRIALGQIVLTYVMGFVNGEHSGAVMLPVRVAASTAIGVLACVLA-LFLPYPRL 163 (638)
Q Consensus 85 ~~~~~~~~val~afvV~lP~~~~lv~KRiAlgq~vivYv~~~in~~~t~~i~hpl~va~~talGv~a~lla-~llP~Prl 163 (638)
..|.++..+..-++..-+-+++-+. + .+.+ +++ .+...+...-+. =...+++|+..+++. .++|-|..
T Consensus 84 ~~~v~~~i~i~~~~~~~~~~g~~~~-~---~~~~-~ii-----~~~~~~~~~~~~-r~l~~~vG~~~a~lvn~~~~~~~~ 152 (332)
T COG4129 84 AFGVVLLIIIPLLVLLKLENGVVPI-T---VGVL-HIL-----VAAMIPLFLIFN-RFLLVFVGVGVAFLVNLVMPPPDY 152 (332)
T ss_pred HHHHHHHHHHHHHHHHhcccchhHH-H---HHHH-HHH-----HHcccchhHHHH-HHHHHHHHHHHHHHHhhhcCCchH
Confidence 5455443333222222222221111 1 1111 111 222222222222 335677777766665 66677776
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHh
Q 006621 164 ACYEVKWNYKQLADNASERPRLYVKA 189 (638)
Q Consensus 164 A~~~vr~~~~~~~e~~~erlnl~vda 189 (638)
..+.-+++...-.+++....--.++.
T Consensus 153 ~~~~~~~kv~~~~~~il~~~~~~l~~ 178 (332)
T COG4129 153 ELKLYRAKVEAILASILWEVASYLRD 178 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666666666666666665544444
No 21
>KOG4711 consensus Predicted membrane protein [General function prediction only]
Probab=95.77 E-value=0.015 Score=67.27 Aligned_cols=197 Identities=14% Similarity=-0.084 Sum_probs=139.7
Q ss_pred CCCCCccccc------cchhhHHHHHHHhcceehhhHhhhhhh---hhccccccc--chhhHHHHHHHHHHHhhcc---c
Q 006621 351 DSPSPSVLPR------QERQLSKVANVKAQGTVLGTVYGVLGC---FLFEKLLPI--RFLFLFPWFIFTSFLRHGR---M 416 (638)
Q Consensus 351 ~~gyWA~l~v------~~r~T~~~a~~R~~GTvlGaV~G~l~~---f~~~~~~~~--~~l~L~~wi~fssfl~~sr---~ 416 (638)
.++=|+.+++ +..+|+....+|.-||..+.-.|.... -.+++.... .+..+|.=.....|+++-. .
T Consensus 121 ~~~~wai~tvvvv~e~svgatl~kglnr~v~tL~ag~l~l~~~~la~~~g~~~~~i~~~~~vF~~~~~~ty~~f~p~iK~ 200 (625)
T KOG4711|consen 121 VNALWAILTVVVVFEFSVGATLSKGLNRAVGTLSAGGLALGIERLAEISGKDNESIFIGITVFIAGAKATYSLFFPYIKA 200 (625)
T ss_pred hhhhheeeEEEEEEEeccchHHHHhHHHHHHHhhhhhhhhhhHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhchhhhc
Confidence 6789999999 444499999999999998887777333 233333333 3334444444555655433 3
Q ss_pred cccccchhhhhheeeeeccccCCChhHHHHHHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHhhh---
Q 006621 417 YGQGGGISAVIGAVLILGRKSLGPPEEFAIARIVETFIGLTCTIIGELLFQSTRASTLAKSQLSKSLGTLHDCISSM--- 493 (638)
Q Consensus 417 Yg~aggvaA~~aaivlLg~~~~~~p~~fA~aRi~Et~IGl~~~i~Velli~P~RA~~lar~~L~~~l~~l~~c~~~~--- 493 (638)
|.+.-.|.=.|-+.+.+.+-..+.+.+.|+-|+..+.+|..+-+++++++||-.|..-+-+-..+.++.++..++..
T Consensus 201 y~y~~lIf~ltf~l~~vs~~r~~~~~~~a~~Rl~~i~~g~~vcliis~f~~PiwAgedlh~l~~~n~~~~a~sleg~~~~ 280 (625)
T KOG4711|consen 201 YEYGFLIFILTFCLVEVSGYRSDYFLELALQRLLLIVIGGGVCLIISRFIFPIWAGEDLHKLDSKNFKNLASSLEGRKFT 280 (625)
T ss_pred cchhhhHHHHHhhhheecccchhHHHHHHHHHHHHHhhCcceeEEEEEEEeeccchhhhhhhhhhhhhhhhhhhcchhhh
Confidence 44444688889999999777668899999999999999999999999999998888666666688888888888741
Q ss_pred ---h-----h---------hccH----HHHH-HHHHHHHHHHHHHHHHHhhhhcCCCC---CCCCCchhHHHHHHHhHH
Q 006621 494 ---T-----L---------RASQ----ASLL-HKQKRLKMHVNELGTLIGEADVEPNF---GFLPFHSACYSKLLVSLV 547 (638)
Q Consensus 494 ---~-----~---------~~~~----~~~~-~~~~~l~~~l~~l~~l~~EA~~EP~f---W~~pF~~~~Y~Kvl~Sl~ 547 (638)
+ . +... .+.+ +-++..-....+++.+..=|.=||.= |.-.+|-.+|-|+=+.++
T Consensus 281 ~~~~~~~y~~~~~i~~~s~~~~~~s~~~~~~~~Gy~svl~s~s~ee~l~~~A~Wep~hG~~~~f~~Pw~~Yvk~~~~~r 359 (625)
T KOG4711|consen 281 ASCFNGEYFCVEKIEILSIPTFYKSAAWYPLYNGYWSVLQSKSQEERLANFAIWEPPHGPYFTFRHPWKNYVKLGGALR 359 (625)
T ss_pred hhhhcchheeehhhhhcchhhhhhhcchhhhhcchhHHhhhhhHHHHHHHHheecCCCCCceeeecchhHeeehhhHHH
Confidence 1 0 0001 1111 12455556667788888889999873 555666679999877766
No 22
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=95.59 E-value=0.051 Score=64.03 Aligned_cols=177 Identities=9% Similarity=0.023 Sum_probs=108.4
Q ss_pred heeeeeCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCchhhHHHHHHHHHHHhcCCCcchhhhHhhhcce--E
Q 006621 42 VILIVTDATLGDTLHGCWLALYATVQSIGPALLTMWLIGPARLTTGTTALAVAIAAFFVALPEGTHLVAKRIALGQI--V 119 (638)
Q Consensus 42 ~vvIvsdaTlG~tlr~~w~a~~gt~~~l~~s~l~l~ligp~~~~~~~~~~~val~afvV~lP~~~~lv~KRiAlgq~--v 119 (638)
|+++|+-.+.|.|..-..+=+.||+.|++.+.+.+++. |.. ......+.++.+.. .....++++++.+ +
T Consensus 412 Tv~~V~qP~~~~T~~R~~~Ri~GTllG~~lg~~ll~l~-p~~---~~~l~liv~~~~l~-----~~~~~~~Y~~a~~fiT 482 (704)
T TIGR01666 412 TTLFVCQPNYSATKVRLRQRIIGTLLGVVIGSPLLYFN-PSL---ELQLVLVVLTGVLF-----FAFRSNNYSFATFFIT 482 (704)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccH---HHHHHHHHHHHHHH-----HHHHHHhHHHHHHHHH
Confidence 55666667999999999999999999999999988775 332 11122222222111 1234566666643 2
Q ss_pred EEEEEEEecCCcccccceechhhhhhhHHHHHHHHHhhCCcchhhHHHHHHHHHHHHHHHHhhhHHHHHhhhhccchhhH
Q 006621 120 LTYVMGFVNGEHSGAVMLPVRVAASTAIGVLACVLALFLPYPRLACYEVKWNYKQLADNASERPRLYVKALCAEDKSTAL 199 (638)
Q Consensus 120 ivYv~~~in~~~t~~i~hpl~va~~talGv~a~lla~llP~PrlA~~~vr~~~~~~~e~~~erlnl~vda~c~~d~~~~~ 199 (638)
...++.+ |-.+ +...--+.=.+-|.+|++.++++..+-+|.-+.+++++......+...+-++.+++.|-...+ ...
T Consensus 483 ~~vll~~-~l~g-~~~~~~~~Rl~dTlIG~~iAl~a~~li~P~w~~~~l~~~~~~al~a~~~Yl~~vl~~~~~g~~-~~~ 559 (704)
T TIGR01666 483 LLVLLCF-NVLG-EGAAVLLPRLLDTLIGCAIAWAAVSYIWPDWQYLQLDKVSHQALRANAVYLLHIISQYQFGKS-DDL 559 (704)
T ss_pred HHHHHHH-Hccc-chHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCc-chh
Confidence 2211211 2211 111000112378999999999999999999999999999999999999999999999876432 222
Q ss_pred HHHhhhchhhhhhhHHHHHHHhhccCcccch
Q 006621 200 ASISLAKSLTKSGTKHIQNIKRYQESMKWEI 230 (638)
Q Consensus 200 ~l~~qak~l~~a~~k~l~~i~~~~~d~~WEr 230 (638)
..+...+..-.+-+.+-..+.+...+=.|-|
T Consensus 560 ~yr~aRR~a~~~~a~l~~~~~~m~~EP~~~~ 590 (704)
T TIGR01666 560 KYRIARRNAHNYDAALSTTVSNMNNEPVKYK 590 (704)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 2233333332333334444444444444433
No 23
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=94.25 E-value=3.1 Score=49.82 Aligned_cols=256 Identities=15% Similarity=0.113 Sum_probs=123.5
Q ss_pred CCccccc-cchh-hHHHHHHHhcceehhhHhhhhhhhhcccc--cccchhhHHHHHHH-HHHHhhccccccccchhhhhh
Q 006621 354 SPSVLPR-QERQ-LSKVANVKAQGTVLGTVYGVLGCFLFEKL--LPIRFLFLFPWFIF-TSFLRHGRMYGQGGGISAVIG 428 (638)
Q Consensus 354 yWA~l~v-~~r~-T~~~a~~R~~GTvlGaV~G~l~~f~~~~~--~~~~~l~L~~wi~f-ssfl~~sr~Yg~aggvaA~~a 428 (638)
.|.++.+ +-.. .+=......+|..+||.+|++..++..=. .....+.++..-++ +..+|..+-+|.+.| ++.
T Consensus 171 ~i~~~sl~~il~~~~vl~~a~~gG~~~Gaa~Gv~~Gli~~l~~~~~~~~~~~~af~GLlaG~fk~~gK~g~~~g---~~l 247 (764)
T TIGR02865 171 SIWGLSLENIIARLAVLLISYIGGSGAGAAGGVVIGVILGLANNANLYQIGVFGFAGLLGGIFKELGKIGTGIG---YLV 247 (764)
T ss_pred EEEeeEHHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhhccCCcceeeHH---HHH
Confidence 3444444 3333 66677788899999998888777664432 12233444443333 455555444444433 333
Q ss_pred eeeeeccccCCChhHHHHHHHHHHHHHHHHHHHHHh--------hcccCchh--------HHHHHHHHHHHHHHHHHHhh
Q 006621 429 AVLILGRKSLGPPEEFAIARIVETFIGLTCTIIGEL--------LFQSTRAS--------TLAKSQLSKSLGTLHDCISS 492 (638)
Q Consensus 429 aivlLg~~~~~~p~~fA~aRi~Et~IGl~~~i~Vel--------li~P~RA~--------~lar~~L~~~l~~l~~c~~~ 492 (638)
+-++++- +......+... +.|+.+++++|++.=- .+-+.+.. ...|..+.+-++..+++|+.
T Consensus 248 ~~~il~~-y~~~~~~~~~~-~~e~~ia~~lFll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~a~~~~~ 325 (764)
T TIGR02865 248 GFLILAF-YTQGSVAFSLA-LYEALIATLLFLLIPNKIYKKLERYLDGERKQPDLQEDYMRKVREIAAEKLEEFSEVFRE 325 (764)
T ss_pred HHHHHHH-HhccchhHHHH-HHHHHHHHHHHHHhhHHHHHHHHhhCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333321 11122223222 7899999999877531 11112211 11455455555555555555
Q ss_pred hhhhc-----------cHHHHHHHHHHHHHHH-------------------HHHHHHHhhhhcCCCCC-CC--CCchh--
Q 006621 493 MTLRA-----------SQASLLHKQKRLKMHV-------------------NELGTLIGEADVEPNFG-FL--PFHSA-- 537 (638)
Q Consensus 493 ~~~~~-----------~~~~~~~~~~~l~~~l-------------------~~l~~l~~EA~~EP~fW-~~--pF~~~-- 537 (638)
++..- .+.+.+...+++.+++ +.+.+++...+...+.= .. .|...
T Consensus 326 Ls~tf~~~~~~~~~~~~~~~~~~~~~~v~~~vC~~C~~~~~CW~~~~~~Ty~~~~~l~~~~e~~~~~~~~~p~~~~~~C~ 405 (764)
T TIGR02865 326 LSNTFVEALASNEKLTMKRKSSYLLENLAERVCQSCNMKHRCWKREFDYTYSAMEELIENLEEKKDPNSKLPDEFERKCI 405 (764)
T ss_pred HHHHHHhhhhccccccchhhHHHHHHHHhhchhhCCCCCchhhCcchHHHHHHHHHHHHHHHhcCCchhhhhHHHHHhCC
Confidence 53100 0112222233333333 22333332222211100 00 11111
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhhccchhhHHHHHHhhhhhhhhHhhhhhhccH-HHHHHH
Q 006621 538 CYSKLLVSLVKMVHLLHFCSYSIGFLEQESQKIDKASWKEDVQKLDGDVKLVKEMACSSIKCFNDDITTIKSL-AILEKE 616 (638)
Q Consensus 538 ~Y~Kvl~Sl~RmldLL~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~ 616 (638)
+-.++++...+..++-+.- +.-.+|+ .|--+-+.++++-+-+.+....+-+++|+..-... +.+.+.
T Consensus 406 r~~~~~~~~~~~~~~~~~n-------~~w~~rl-----~e~R~~va~Ql~~~s~~l~~~a~e~~~~~~~~~~~e~~i~~~ 473 (764)
T TIGR02865 406 KRKELINTTEDILNNYIIN-------EMWRKRL-----EEGRRLVAEQLKGVAESVEDIAKEINLEIVFHQLLEEKIIRA 473 (764)
T ss_pred CHHHHHHHHHHHHHHHHHH-------HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHH
Confidence 1234444444444333211 2222333 44556677788888888888788777666655554 458888
Q ss_pred HhhhcCCCCc
Q 006621 617 LERKKINQWD 626 (638)
Q Consensus 617 ~~~~~~~~~d 626 (638)
|++++|.-.|
T Consensus 474 L~~~gi~v~~ 483 (764)
T TIGR02865 474 LNKNGIPYED 483 (764)
T ss_pred HHHCCCeeEE
Confidence 8888883333
No 24
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=93.86 E-value=0.12 Score=57.39 Aligned_cols=247 Identities=13% Similarity=0.073 Sum_probs=140.1
Q ss_pred hHhhhH--HhhhhhcccCCCCCCcceeecccchhhhe-ee--eeCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 006621 9 AYRTAC--TIVGSITFYGPSSLRGQVTFPAFSYVTVI-LI--VTDATLGDTLHGCWLALYATVQSIGPALLTMWLIGPAR 83 (638)
Q Consensus 9 a~RtAC--~Ivg~~~~Y~P~~~r~~~~FPaFsYv~~v-vI--vsdaTlG~tlr~~w~a~~gt~~~l~~s~l~l~ligp~~ 83 (638)
=+|.++ +|+ ++-..- ++..+|+. --.|.+.| .+ ...-.+|..+...-..+.|++.|.+++++..|+..-.|
T Consensus 19 ~~k~~i~~~i~-~~l~~i-~~~~~~~g--~~~yl~~i~~~~~~p~~~~~~~~~~~~~~~~g~~~g~~~~~l~~~~a~~aR 94 (459)
T PF10337_consen 19 MFKCWIAPWIA-LILCQI-PPVARWLG--TAGYLAPIISVIVPPGRPRGKFLEAMILLLLGVCLGWAWGLLAMYIAVAAR 94 (459)
T ss_pred HHHHHHHHHHH-HHHHhc-hHHHHHhc--chhHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356533 443 333333 33445643 34566644 22 23349999999999999999999999999999984333
Q ss_pred c-------------------C------------------chh---hHHHHHHHHHHHhcCCCcchhhhHhhhcc----eE
Q 006621 84 L-------------------T------------------TGT---TALAVAIAAFFVALPEGTHLVAKRIALGQ----IV 119 (638)
Q Consensus 84 ~-------------------~------------------~~~---~~~~val~afvV~lP~~~~lv~KRiAlgq----~v 119 (638)
- + +.. .+.+..++.++.+.-....+- +.|++ |+
T Consensus 95 ~~~t~a~l~~~~~~~~~~~s~~~~~~~~~~~i~~G~~~~a~~saV~av~l~~~i~~~~~lRa~~p~---~~~~~I~~~I~ 171 (459)
T PF10337_consen 95 PHDTQARLQQLQQSAGACTSGPNPAACAQQLIFDGFFYDARASAVFAVFLFVFIYFHGWLRAKNPK---LNFPVIFGSIF 171 (459)
T ss_pred cCccHHHHHHHHHHhccccCCCChhHHHHHhhcccceecchHHHHHHHHHHHHHHHHHHHHHhCcc---hHHHHHHHHHH
Confidence 1 1 111 334444455555544333332 33444 33
Q ss_pred EEEEEEEecCCcc-cccceechhhhhhhHHHHHHHHHhhCCcchhhHHHHHHHHHHHHHHHHhhhHHHHHhhhhccchhh
Q 006621 120 LTYVMGFVNGEHS-GAVMLPVRVAASTAIGVLACVLALFLPYPRLACYEVKWNYKQLADNASERPRLYVKALCAEDKSTA 198 (638)
Q Consensus 120 ivYv~~~in~~~t-~~i~hpl~va~~talGv~a~lla~llP~PrlA~~~vr~~~~~~~e~~~erlnl~vda~c~~d~~~~ 198 (638)
+..+.+|-----+ .+.--+..+....++|+..+++.-++=||......+.+....+.+-+.+.++.-.+-+...+.+..
T Consensus 172 ~~i~~t~g~~~p~~~~~~l~~~ll~P~~ig~ai~~~vslliFP~sss~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~~~ 251 (459)
T PF10337_consen 172 VDIFLTYGPLFPTFFAYTLGKTLLKPFLIGIAIALVVSLLIFPESSSHVVLKSMEDYLRLLKKALDAQRNFLQSSEPSDE 251 (459)
T ss_pred HHHHHHhCcCcCcchHHHHHHHHHHHHHHHHHHHHHHheeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 2222333111112 333333355577888888888887788889999999999999999999999998887766644322
Q ss_pred ------HHHHhhhchhhhhhhHHHHHHHhhccCcccch-hhhhhccccCChhhhhhhhccccchhhHHHHhHHHH
Q 006621 199 ------LASISLAKSLTKSGTKHIQNIKRYQESMKWEI-PFKFLRSNYVKPVKKFQYLEIPLRGMEMAEVLEELT 266 (638)
Q Consensus 199 ------~~l~~qak~l~~a~~k~l~~i~~~~~d~~WEr-~~~~~~~~~~~~~~~l~~l~~~LRgMe~Alvl~~~i 266 (638)
..+......+...-.++.-.+....-|+.|-| .. .-.+.-.+.+.++..++-||..+.-+.++.
T Consensus 252 ~~~~~~~~L~~~~~~l~~~~~~l~~~l~~~~~Eis~grl~~----~Dl~~i~~~lr~l~~~~~gL~~~~~~~~~~ 322 (459)
T PF10337_consen 252 FDAKSLKKLKATKAKLRALYAKLQAALRFLKLEISYGRLSP----DDLKPIFSLLRSLMIPLSGLSSFCDLFQRL 322 (459)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHeeecCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23322222222222333333334444444444 21 112222245666777777777766433333
No 25
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=87.60 E-value=3.9 Score=45.44 Aligned_cols=134 Identities=12% Similarity=0.185 Sum_probs=80.6
Q ss_pred hhhhhhhhccc-ccccchhhHHHHHHHHHHHhhccccccccc-hhhhhheeee-eccc--cCCChhHHHHHHHHHHHHHH
Q 006621 382 YGVLGCFLFEK-LLPIRFLFLFPWFIFTSFLRHGRMYGQGGG-ISAVIGAVLI-LGRK--SLGPPEEFAIARIVETFIGL 456 (638)
Q Consensus 382 ~G~l~~f~~~~-~~~~~~l~L~~wi~fssfl~~sr~Yg~agg-vaA~~aaivl-Lg~~--~~~~p~~fA~aRi~Et~IGl 456 (638)
.|.+.....+. ...++.++++.-+++.+| -||-.|+ .|..+.+|.+ ..|+ .+.++++.-++=.+|++.|+
T Consensus 191 igll~ql~L~de~~rf~l~~l~lP~I~lA~-----~yGWQG~llasllnsi~l~~arQ~~~fs~l~dLll~l~~Qal~Gl 265 (497)
T COG3851 191 IGLLLQLGLPDELSRFTLFCLALPIIALAW-----HYGWQGALLASLLNSIALTIARQTWRFSHLVDLLLSLLAQALTGL 265 (497)
T ss_pred HHHHHHhcChHhhhhHhHHHHHHHHHHHHH-----HhcchHHHHHHHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 45555544333 233444555555555443 2899887 7888888887 3343 24789999999999999999
Q ss_pred HHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHhhhhhh---ccHHHHHHHHHHHHHHH---HHHHHHHhhhhcCC
Q 006621 457 TCTIIGELLFQSTRASTLAKSQLSKSLGTLHDCISSMTLR---ASQASLLHKQKRLKMHV---NELGTLIGEADVEP 527 (638)
Q Consensus 457 ~~~i~Velli~P~RA~~lar~~L~~~l~~l~~c~~~~~~~---~~~~~~~~~~~~l~~~l---~~l~~l~~EA~~EP 527 (638)
+.+++.+= -.-.+..|++-|..=++.-+.+.+. -.+.-.||+||++-..+ ..|..+++.|.-.|
T Consensus 266 ~LGiaIqr-------lrelnqrL~~EL~~~raLaeqListEEsiRk~vARELHDeIGQnITAIr~Qa~ivkR~~~~~ 335 (497)
T COG3851 266 GLGIAIQR-------LRELNQRLQKELARNRALAEQLISTEESIRKDVARELHDEIGQNITAIRTQAGIVKRAADNA 335 (497)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhccCCH
Confidence 99888764 2234444444444444444443211 11345668888888776 33555666654443
No 26
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=80.77 E-value=0.76 Score=41.25 Aligned_cols=111 Identities=20% Similarity=0.311 Sum_probs=62.0
Q ss_pred cccchhh-heeeeeCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCchhhHHHHHHHHHHHhcCCCcchhhhHh
Q 006621 35 PAFSYVT-VILIVTDATLGDTLHGCWLALYATVQSIGPALLTMWLIGPARLTTGTTALAVAIAAFFVALPEGTHLVAKRI 113 (638)
Q Consensus 35 PaFsYv~-~vvIvsdaTlG~tlr~~w~a~~gt~~~l~~s~l~l~ligp~~~~~~~~~~~val~afvV~lP~~~~lv~KRi 113 (638)
|-.+++. +++++...+.|++.+.+++=+.||..|.+.+.+.+.+. |++ ......+.+..|...+... |+.
T Consensus 12 ~~~~W~~it~~~v~~~~~~~~~~~~~~Ri~Gt~iG~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~-----~~y 82 (128)
T PF13515_consen 12 PHGYWAPITVVSVLSPSYGATVNRAIQRILGTLIGVVLGLLLLYLF-PGN---YVLILIVFLLMFLIFYFLS-----KNY 82 (128)
T ss_pred CchHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCH---HHHHHHHHHHHHHHHHHHh-----ccH
Confidence 3334454 44555566999999999999999999999999988555 443 3333444444544433222 333
Q ss_pred hhcceEEEE----EEEEecCCcccccceechhhhhhhHHHHHHHH
Q 006621 114 ALGQIVLTY----VMGFVNGEHSGAVMLPVRVAASTAIGVLACVL 154 (638)
Q Consensus 114 Algq~vivY----v~~~in~~~t~~i~hpl~va~~talGv~a~ll 154 (638)
+.+++.+.+ ...+.++.+.+...--++=...+++|++.+++
T Consensus 83 ~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~R~~~v~iG~~i~~~ 127 (128)
T PF13515_consen 83 AIAQIFITVMVVLLFSLIHPGNGDPWQLALERILDVLIGILIALL 127 (128)
T ss_pred HHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHh
Confidence 333332211 12222222222222222334677788777664
No 27
>KOG4711 consensus Predicted membrane protein [General function prediction only]
Probab=72.04 E-value=5.7 Score=46.69 Aligned_cols=175 Identities=18% Similarity=0.228 Sum_probs=101.7
Q ss_pred ccccCCCCCccccc-cchhhHHHHHHHhcceehhhHhhhhhhhhcccccccchhhHHHHHHHHHHHhhccccccccchhh
Q 006621 347 WVCKDSPSPSVLPR-QERQLSKVANVKAQGTVLGTVYGVLGCFLFEKLLPIRFLFLFPWFIFTSFLRHGRMYGQGGGISA 425 (638)
Q Consensus 347 ~~~~~~gyWA~l~v-~~r~T~~~a~~R~~GTvlGaV~G~l~~f~~~~~~~~~~l~L~~wi~fssfl~~sr~Yg~aggvaA 425 (638)
|+...+||||++.. ...+++ +..+..--++.+ .+-.-.||. .|++-+.++. .-|
T Consensus 308 ~~~~~~Gy~svl~s~s~ee~l----------------~~~A~Wep~hG~--~~~f~~Pw~---~Yvk~~~~~r----~ca 362 (625)
T KOG4711|consen 308 WYPLYNGYWSVLQSKSQEERL----------------ANFAIWEPPHGP--YFTFRHPWK---NYVKLGGALR----QCA 362 (625)
T ss_pred hhhhhcchhHHhhhhhHHHHH----------------HHHheecCCCCC--ceeeecchh---HeeehhhHHH----HHH
Confidence 66678899999988 433355 111111111112 456678888 5555444333 334
Q ss_pred hhheeeeecccc----CCChhHHHHHHHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHhhhh----h--
Q 006621 426 VIGAVLILGRKS----LGPPEEFAIARIVETFIGLTCTIIGELLFQSTRASTLAKSQLSKSLGTLHDCISSMT----L-- 495 (638)
Q Consensus 426 ~~aaivlLg~~~----~~~p~~fA~aRi~Et~IGl~~~i~Velli~P~RA~~lar~~L~~~l~~l~~c~~~~~----~-- 495 (638)
++... + |.+ ...|......+ ...++ -.++-+.-+++|.+++...+..++++++.+++-.+... .
T Consensus 363 ~~i~a--l-h~~l~s~~qap~~~~~~~--~~~l~-rva~e~~kvl~~~~~~~~~~~~~s~~~~~~~~~~~~A~~~L~~~i 436 (625)
T KOG4711|consen 363 FIIMA--L-HGCLLSEIQAPRDLRNKF--RLTLR-RVAIEISKVLRPFRAKVELMYKLSSALDILLQYVTVADRELQRNI 436 (625)
T ss_pred HHHHH--h-cccccccccCcHHHHHHH--HHHHH-HhhHHHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHHHHHhhc
Confidence 43332 3 232 23344443332 23333 66777888899999999999999998754444333210 0
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhHHHHHHHhHHHHHHHH
Q 006621 496 RASQASLLHKQKRLKMHVNELGTLIGEADVEPNFGFLPFHSACYSKLLVSLVKMVHLL 553 (638)
Q Consensus 496 ~~~~~~~~~~~~~l~~~l~~l~~l~~EA~~EP~fW~~pF~~~~Y~Kvl~Sl~RmldLL 553 (638)
..+........+.+...+.+...++.++..||++ ..+|+.++|..+..++.-..+++
T Consensus 437 ds~p~l~v~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~~~ek~~~~~~~~~~~~~~~ 493 (625)
T KOG4711|consen 437 DSNPTLLVNSESWISSNLQAARELLNEVNHEPNL-KGTFPVEKYNELIHKLLSLGILL 493 (625)
T ss_pred cCcchHhhcccchhhhhHHHHHHHhhhhccchhh-cccccchhHHHHHHHhhcchhhh
Confidence 0111112222333444556788889999999994 67888899988887776655554
No 28
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=55.74 E-value=2.7e+02 Score=34.40 Aligned_cols=76 Identities=13% Similarity=0.055 Sum_probs=37.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhhccchhhHHHHHHhhhhhhhhHhhhhhhc-cHHHHHHHHhhh
Q 006621 542 LLVSLVKMVHLLHFCSYSIGFLEQESQKIDKASWKEDVQKLDGDVKLVKEMACSSIKCFNDDITTIK-SLAILEKELERK 620 (638)
Q Consensus 542 vl~Sl~RmldLL~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~ 620 (638)
+...+.++....+-+...++.++.-...+ ++.....+...+..||.+..+++.+=|+..+.| .-+..++-++..
T Consensus 247 vi~~l~~v~~~~~el~~~~~ave~m~~~L-----~~~~s~~~~~~~~lr~~~~~sL~~llq~~~c~~~~ca~~~~~l~sl 321 (865)
T KOG4331|consen 247 VIPVLDYVLSAAQELREMSEAVENMNDTL-----DSLGSQLNDGASKLRERVNASLKVLLQVVLCQKKDCASAVKTLPSL 321 (865)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhHHhhHHHHHHHHHHHHHHHHHhHHhHHHhhHHHHHhhhhh
Confidence 33344444444444444444444443334 555556666666666665555443333444444 555555555543
Q ss_pred cC
Q 006621 621 KI 622 (638)
Q Consensus 621 ~~ 622 (638)
+-
T Consensus 322 ~~ 323 (865)
T KOG4331|consen 322 RS 323 (865)
T ss_pred cc
Confidence 33
No 29
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=55.33 E-value=1.3e+02 Score=33.63 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhHHHHHHHhHHHHHHHHH
Q 006621 501 SLLHKQKRLKMHVNELGTLIGEADVEPNFGFLPFHSACYSKLLVSLVKMVHLLH 554 (638)
Q Consensus 501 ~~~~~~~~l~~~l~~l~~l~~EA~~EP~fW~~pF~~~~Y~Kvl~Sl~RmldLL~ 554 (638)
.+.+..+.++..+++|++.+ .+|+||-.| +.+.++..-.+++.+.+.
T Consensus 3 ~~~~~~e~~~~~~~~le~~~----~~~~~w~d~---~~~~~~~~e~~~L~~~v~ 49 (359)
T PRK00591 3 SMLDKLEALEERYEELEALL----SDPEVISDQ---KRFRKLSKEYAELEPIVE 49 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHh----cCCCcccCH---HHHHHHHHHHHHHHHHHH
Confidence 34445556666666666655 679999886 344555544444444333
No 30
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=54.09 E-value=1.5e+02 Score=33.11 Aligned_cols=51 Identities=24% Similarity=0.139 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhHHHHHHHhHHHHHHHHHHH
Q 006621 502 LLHKQKRLKMHVNELGTLIGEADVEPNFGFLPFHSACYSKLLVSLVKMVHLLHFC 556 (638)
Q Consensus 502 ~~~~~~~l~~~l~~l~~l~~EA~~EP~fW~~pF~~~~Y~Kvl~Sl~RmldLL~~~ 556 (638)
+.+..+.++..+++|++.+ ..|+||..|=....-.|=+..+.++++.+.-+
T Consensus 5 ~~~~~~~~~~~~~~le~~~----~~p~~w~d~~~~~~~~k~~~~l~~~v~~~~~~ 55 (360)
T TIGR00019 5 LLEKLESLLERYEELEALL----SDPEVISDQDKLRKLSKEYSQLEEIVDCYREY 55 (360)
T ss_pred HHHHHHHHHHHHHHHHHHh----cCCccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555544 56999998744433333334444444443333
No 31
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=51.60 E-value=77 Score=26.85 Aligned_cols=47 Identities=17% Similarity=0.126 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHhhCCcchhhHHHHHHHHHHHHHHHHhhhHHHHHhhhh
Q 006621 145 TAIGVLACVLALFLPYPRLACYEVKWNYKQLADNASERPRLYVKALCA 192 (638)
Q Consensus 145 talGv~a~lla~llP~PrlA~~~vr~~~~~~~e~~~erlnl~vda~c~ 192 (638)
.++|+++-.++.+|--|+ .-+|+|++.+..++++.+.++-+.+..-.
T Consensus 5 ~l~Ga~~Ga~~glL~aP~-sG~e~R~~l~~~~~~~~~~~~~~~~~~~~ 51 (74)
T PF12732_consen 5 FLAGAAAGAAAGLLFAPK-SGKETREKLKDKAEDLKDKAKDLYEEAKE 51 (74)
T ss_pred HHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777766776666676 66999999999999999988766655443
No 32
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=48.78 E-value=1.7e+02 Score=24.84 Aligned_cols=42 Identities=17% Similarity=0.251 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHhhh
Q 006621 451 ETFIGLTCTIIGELLFQSTRASTLAKSQLSKSLGTLHDCISSM 493 (638)
Q Consensus 451 Et~IGl~~~i~Velli~P~RA~~lar~~L~~~l~~l~~c~~~~ 493 (638)
-..+|.+++.++-+++-|.+. .-.|..|....+.+.+-.+.+
T Consensus 4 g~l~Ga~~Ga~~glL~aP~sG-~e~R~~l~~~~~~~~~~~~~~ 45 (74)
T PF12732_consen 4 GFLAGAAAGAAAGLLFAPKSG-KETREKLKDKAEDLKDKAKDL 45 (74)
T ss_pred HHHHHHHHHHHHHHHhCCCCc-HHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999654 445666666666666555543
No 33
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=48.46 E-value=1.4e+02 Score=28.29 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhhcccCchh---HHHHHHHHHHHHHHHHHHhhh
Q 006621 449 IVETFIGLTCTIIGELLFQSTRAS---TLAKSQLSKSLGTLHDCISSM 493 (638)
Q Consensus 449 i~Et~IGl~~~i~Velli~P~RA~---~lar~~L~~~l~~l~~c~~~~ 493 (638)
+.-++||-+++-++-+++-|++.- ..+|...++-.++.++-..++
T Consensus 8 l~G~liGgiiGa~aaLL~AP~sGkelR~~~K~~~~~~~~~ae~~~~~~ 55 (115)
T COG4980 8 LFGILIGGIIGAAAALLFAPKSGKELRKKLKKSGDALFELAEDKGTDI 55 (115)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456889999999999999998754 446777666666666665554
No 34
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=46.79 E-value=35 Score=32.51 Aligned_cols=46 Identities=17% Similarity=0.194 Sum_probs=38.8
Q ss_pred chhhheeeee-CCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 006621 38 SYVTVILIVT-DATLGDTLHGCWLALYATVQSIGPALLTMWLIGPAR 83 (638)
Q Consensus 38 sYv~~vvIvs-daTlG~tlr~~w~a~~gt~~~l~~s~l~l~ligp~~ 83 (638)
.|.....|++ ..|.-++++..|+=+.|+..|.+.+++.+.+.|++-
T Consensus 30 ~~A~i~Ail~~q~T~~~S~~~~~~Ri~~~~iG~~~a~~~~~~~g~~~ 76 (141)
T PF06081_consen 30 FFAPIAAILSMQPTVYRSLKQGLNRILGTLIGALLALLFFLILGYNP 76 (141)
T ss_pred HHHHHHHhheeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccH
Confidence 3455555555 579999999999999999999999999999998754
No 35
>PF05218 DUF713: Protein of unknown function (DUF713); InterPro: IPR007883 This family contains proteins of unknown function from Caenorhabditis species.
Probab=44.93 E-value=3.4e+02 Score=27.33 Aligned_cols=137 Identities=11% Similarity=0.114 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccHHHHHHH-------HHHHHHHHHHHH----HHHhhhhcCCCCCCC--CCchhH-H
Q 006621 474 LAKSQLSKSLGTLHDCISSMTLRASQASLLHK-------QKRLKMHVNELG----TLIGEADVEPNFGFL--PFHSAC-Y 539 (638)
Q Consensus 474 lar~~L~~~l~~l~~c~~~~~~~~~~~~~~~~-------~~~l~~~l~~l~----~l~~EA~~EP~fW~~--pF~~~~-Y 539 (638)
-+|++-.+++.++..|+.- +.--+++ -+.+|..|..+. .|..|.. |+- +..... +
T Consensus 5 ~~r~E~k~r~~a~~~CI~L------k~rFEekE~eWsdWLk~~R~~I~~~~~~f~~Fe~~~~-----~~~~~~e~~~~~~ 73 (182)
T PF05218_consen 5 KMRRESKQRFAAFLQCIQL------KQRFEEKEQEWSDWLKKLRQPIVRLKNRFSDFEDEIK-----FKKTDEEDEEDLQ 73 (182)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh-----hcccchhhhhhHH
Confidence 4788999999999999984 1222222 233344443322 2222222 221 111111 2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhhccchhhHHHHHHhhhhhhhhHhhhh-hhccHHHHHHHHh
Q 006621 540 SKLLVSLVKMVHLLHFCSYSIGFLEQESQKIDKASWKEDVQKLDGDVKLVKEMACSSIKCFNDDIT-TIKSLAILEKELE 618 (638)
Q Consensus 540 ~Kvl~Sl~RmldLL~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~ 618 (638)
+.+..=.+.+......+.++-..|...+++.|++. |...|.+.+--.-.+++..+..++ ++. ...+...|++.+
T Consensus 74 ~E~~~l~~~v~~a~~~l~~~f~~L~~L~~~~~D~i---FlkvLqK~i~~va~~L~~il~~l~-~~~~~~~~~~~L~~~~- 148 (182)
T PF05218_consen 74 SEISNLHKSVMSAYNMLENAFENLKKLSEKFPDKI---FLKVLQKCISDVANKLLEILESLD-ELENDKDWFQKLREAF- 148 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc---hHHHHHHHHHHHHHHHHHHHHHHH-hhcCChHHHHHHHHHH-
Confidence 23333344555556666667777777776664432 334444444444445555555555 332 233555566655
Q ss_pred hhcCCCCcc
Q 006621 619 RKKINQWDF 627 (638)
Q Consensus 619 ~~~~~~~d~ 627 (638)
.+|+++|+
T Consensus 149 -s~l~~~~I 156 (182)
T PF05218_consen 149 -SRLDPSDI 156 (182)
T ss_pred -HcCCcccC
Confidence 45656665
No 36
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=44.59 E-value=42 Score=35.19 Aligned_cols=100 Identities=16% Similarity=0.096 Sum_probs=62.5
Q ss_pred chhhHHHHHHHHHHHhcCCCcchhhhHhhhcceEEEEEEEEecCCcc-cccceechhhhhhhHHHHHHHHHhhCCcchhh
Q 006621 86 TGTTALAVAIAAFFVALPEGTHLVAKRIALGQIVLTYVMGFVNGEHS-GAVMLPVRVAASTAIGVLACVLALFLPYPRLA 164 (638)
Q Consensus 86 ~~~~~~~val~afvV~lP~~~~lv~KRiAlgq~vivYv~~~in~~~t-~~i~hpl~va~~talGv~a~lla~llP~PrlA 164 (638)
.+...+++++.+|+.++-.--+.-.-.|++|... +.|.+..++... +...| ++...+|.+-..+--++=+|..-
T Consensus 23 ~~l~~~~~~~~~F~~~ml~~~G~r~~~i~~~~Ll-~~v~t~~~~~~~~~~~~~----~~l~~~Gglwy~~lsl~~~~l~p 97 (284)
T PF12805_consen 23 PWLLILVLALLTFFFGMLGVYGPRAATIGFATLL-VAVYTMAGPSPGPEALEH----ALLFLAGGLWYLLLSLLWWPLRP 97 (284)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHhCCCcchHHHHH----HHHHHHHHHHHHHHHHHHHHHcC
Confidence 3566788888889998888888888999998874 334454455432 34444 34455555554444444445555
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhh
Q 006621 165 CYEVKWNYKQLADNASERPRLYVKAL 190 (638)
Q Consensus 165 ~~~vr~~~~~~~e~~~erlnl~vda~ 190 (638)
.+-+|+.....-+...+-++.-.+-|
T Consensus 98 ~r~~rqaLa~~y~~lA~yl~~ka~~~ 123 (284)
T PF12805_consen 98 YRPVRQALAECYRALADYLRAKARFF 123 (284)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56667766666666666666655556
No 37
>PRK09110 flagellar motor protein MotA; Validated
Probab=38.77 E-value=63 Score=34.65 Aligned_cols=54 Identities=22% Similarity=0.361 Sum_probs=34.0
Q ss_pred hhccccccccc-hhhhhheeeeeccccCCChhHHHH--H-HHHHHHHHHHHHHHHHhhcccC
Q 006621 412 RHGRMYGQGGG-ISAVIGAVLILGRKSLGPPEEFAI--A-RIVETFIGLTCTIIGELLFQST 469 (638)
Q Consensus 412 ~~sr~Yg~agg-vaA~~aaivlLg~~~~~~p~~fA~--a-Ri~Et~IGl~~~i~Velli~P~ 469 (638)
..-..|.|+.| +.|+++-|..|+.-+ ++|+...- + =++=|+.|+ ++..+++-|-
T Consensus 166 ~~~g~~aPa~GiiGtv~GLI~~l~~l~-~dp~~iG~~iAvAlv~TlyGi---~lAn~i~~Pi 223 (283)
T PRK09110 166 QKVADALPAFGIVAAVLGVVKTMGSID-QPPAVLGALIGAALVGTFLGI---LLAYGFVGPL 223 (283)
T ss_pred HHHHhhCchhHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 33445778776 888898888887664 25654332 2 455666666 4456667784
No 38
>PF08824 Serine_rich: Serine rich protein interaction domain; InterPro: IPR014928 This is a serine rich protein that is found in the docking protein p130(cas) (Crk-associated substrate). The protein folds into a four helix bundle which is associated with protein-protein interactions []. ; PDB: 2L81_A 1Z23_A.
Probab=36.40 E-value=1.6e+02 Score=29.23 Aligned_cols=19 Identities=16% Similarity=0.267 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 006621 503 LHKQKRLKMHVNELGTLIG 521 (638)
Q Consensus 503 ~~~~~~l~~~l~~l~~l~~ 521 (638)
.++|.++-+.|+.|-.|+.
T Consensus 11 ~~LQ~~v~~sVs~L~~fvs 29 (159)
T PF08824_consen 11 SRLQQEVESSVSNLMSFVS 29 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3445555555555555554
No 39
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=36.09 E-value=4.3e+02 Score=27.91 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=19.5
Q ss_pred HHHHHH-HHHHHHHHHHHHHHhhcccCc
Q 006621 444 FAIARI-VETFIGLTCTIIGELLFQSTR 470 (638)
Q Consensus 444 fA~aRi-~Et~IGl~~~i~Velli~P~R 470 (638)
.++.|+ +=..||++++-..++.+|-.-
T Consensus 82 ~~~~R~~lAvliaivIs~pl~l~iF~~e 109 (301)
T PF14362_consen 82 QALPRLLLAVLIAIVISEPLELKIFEKE 109 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345587 567788888888888887643
No 40
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=35.43 E-value=2.4e+02 Score=31.56 Aligned_cols=42 Identities=21% Similarity=0.145 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCCCCchhHHHHHHHhHHHHHHHHHHH
Q 006621 508 RLKMHVNELGTLIGEADVEPNFGFLPFHSACYSKLLVSLVKMVHLLHFC 556 (638)
Q Consensus 508 ~l~~~l~~l~~l~~EA~~EP~fW~~pF~~~~Y~Kvl~Sl~RmldLL~~~ 556 (638)
.++..+++|++.+ .+|+||..| +.|.++..-++++.+++..+
T Consensus 27 ~~~~~~~~l~~~l----~~p~~~~d~---~~~~~l~ke~~~L~~iv~~~ 68 (367)
T PRK00578 27 ALKERLEELEAEA----EDPDFWNDQ---ERAQKVTKELSSLKAKLDTL 68 (367)
T ss_pred HHHHHHHHHHHHh----cCCccccCH---HHHHHHHHHHHHHHHHHHHH
Confidence 3444455555444 679999887 45666654444444444333
No 41
>COG4190 Predicted transcriptional regulator [Transcription]
Probab=31.28 E-value=1e+02 Score=30.18 Aligned_cols=77 Identities=21% Similarity=0.229 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhh
Q 006621 501 SLLHKQKRLKMHVNELGTLIGEADVEPNFGFLPFHSACYSKLLVSLVKMVHLLHFCSYSIGFLEQESQKIDKASWKEDVQ 580 (638)
Q Consensus 501 ~~~~~~~~l~~~l~~l~~l~~EA~~EP~fW~~pF~~~~Y~Kvl~Sl~RmldLL~~~~~a~~~l~~~~~~~~~~~~~~~~~ 580 (638)
...+.+|++...+..+++== .-+.-|..||+.+ +|+.|++ .=+.++.|+...++- -.+..|.-.
T Consensus 23 ~~ddi~kR~~~~ir~~~~g~-~~~~~Ptl~F~Sy---------e~la~vL-----sp~nleLl~~Ia~~~-P~Si~ElAe 86 (144)
T COG4190 23 PSDDIHKRITVSIRAAEEGD-AMDATPTLWFTSY---------EDLARVL-----SPRNLELLELIAQEE-PASINELAE 86 (144)
T ss_pred cHHHHHHHHHHHHhhhhcCC-CccCCceeccccH---------HHHHHHh-----ChhHHHHHHHHHhcC-cccHHHHHH
Confidence 34466777777765544432 4567799999854 3444433 112334445555555 778899999
Q ss_pred ccchhhHHHHHHh
Q 006621 581 KLDGDVKLVKEMA 593 (638)
Q Consensus 581 ~~~~~~~~~~~~~ 593 (638)
.+++|++-+-+.+
T Consensus 87 ~vgRdv~nvhr~L 99 (144)
T COG4190 87 LVGRDVKNVHRTL 99 (144)
T ss_pred HhCcchHHHHHHH
Confidence 9999997765544
No 42
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=28.30 E-value=3.2e+02 Score=23.72 Aligned_cols=40 Identities=10% Similarity=0.274 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHhhh
Q 006621 454 IGLTCTIIGELLFQSTRASTLAKSQLSKSLGTLHDCISSM 493 (638)
Q Consensus 454 IGl~~~i~Velli~P~RA~~lar~~L~~~l~~l~~c~~~~ 493 (638)
++++..++|=+++.|-+.-.-.=.++.+.++.+++-++.+
T Consensus 6 ~Aiaf~vLvi~l~~~l~~l~~~l~~~~~ti~~l~~~~~~i 45 (90)
T PF06103_consen 6 AAIAFAVLVIFLIKVLKKLKKTLDEVNKTIDTLQEQVDPI 45 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4555555555555553222222223334444444444443
No 43
>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains. Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].
Probab=27.73 E-value=1.2e+02 Score=30.88 Aligned_cols=73 Identities=12% Similarity=0.036 Sum_probs=53.5
Q ss_pred CcchhhHHHHHHHHHHHHHHHHhhhHHHHHhhhhcc-ch--hhHHHHhhhchhhhhhhHHHHHHHhhccCcccchh
Q 006621 159 PYPRLACYEVKWNYKQLADNASERPRLYVKALCAED-KS--TALASISLAKSLTKSGTKHIQNIKRYQESMKWEIP 231 (638)
Q Consensus 159 P~PrlA~~~vr~~~~~~~e~~~erlnl~vda~c~~d-~~--~~~~l~~qak~l~~a~~k~l~~i~~~~~d~~WEr~ 231 (638)
|+|.=|.+.+|+..-.....+.+..-.+++.+..+. +. ....-..+.......-...+.+++.+..-++||-+
T Consensus 1 P~P~Sar~~vRk~La~~l~~l~~~Y~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~l~~~k~Ep~ 76 (229)
T PF10334_consen 1 PRPPSARRHVRKTLASTLSELGDLYSLVVSFWSRRLDNPDGHIDAEEDAIRKRFLKLQQSLNSLRTLLAFAKFEPS 76 (229)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCC
Confidence 999999999999999999999999999999999963 21 11111111112223345677888999999999984
No 44
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=27.54 E-value=5.1e+02 Score=31.59 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=31.5
Q ss_pred CchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhhcc
Q 006621 534 FHSACYSKLLVSLVKMVHLLHFCSYSIGFLEQESQKIDKASWKEDVQKL 582 (638)
Q Consensus 534 F~~~~Y~Kvl~Sl~RmldLL~~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 582 (638)
-....|-+|+.++.|+-.+..+|.++...-- ...|.++...-
T Consensus 201 ~~~~~~~~if~~i~R~~~l~~~Y~~~r~~~l-------~~~W~~~~~~~ 242 (766)
T PF10191_consen 201 DAAKEYVKIFSSIGREPQLEQYYCKCRKAPL-------QRLWQEYCQSD 242 (766)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------HHHHHHHhhhc
Confidence 4557799999999999999999998887422 33476655443
No 45
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=26.32 E-value=1.2e+02 Score=30.93 Aligned_cols=83 Identities=16% Similarity=0.136 Sum_probs=56.6
Q ss_pred hhhHHHHHHHHHHHhcCCCcchhhhHhhhcceEEEEEEEEecCCcccccceechhh-hhhhHHHHHHHHHhhCCcchhhH
Q 006621 87 GTTALAVAIAAFFVALPEGTHLVAKRIALGQIVLTYVMGFVNGEHSGAVMLPVRVA-ASTAIGVLACVLALFLPYPRLAC 165 (638)
Q Consensus 87 ~~~~~~val~afvV~lP~~~~lv~KRiAlgq~vivYv~~~in~~~t~~i~hpl~va-~~talGv~a~lla~llP~PrlA~ 165 (638)
+.++|.+-|.-=|++.-+....+.. -++.+...+..++..| .+||+|.++++.|++ ++
T Consensus 126 ~s~aP~lGL~GTV~GIm~aF~~i~~---------------~~~~~~a~vA~GIseAL~aTA~GL~vAIPAvi------~y 184 (216)
T COG0811 126 GSIAPFLGLLGTVWGIMPAFIGIGA---------------GGGADLAVVAPGISEALIATAIGLFVAIPAVV------AY 184 (216)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhc---------------cCCCCHHHHHhhHHHHHHHHHHHHHHHHHHHH------HH
Confidence 3366777776666665554322221 1234567888988999 999999999999986 67
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHhh
Q 006621 166 YEVKWNYKQLADNASERPRLYVKAL 190 (638)
Q Consensus 166 ~~vr~~~~~~~e~~~erlnl~vda~ 190 (638)
+-.++.+..+..++.+--+-+.+.|
T Consensus 185 n~l~r~~~~~~~~~e~~~~~l~~~~ 209 (216)
T COG0811 185 NVLRRKVEELLAKLEDFAEELELIL 209 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888777777666655554443
No 46
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.29 E-value=1e+03 Score=27.14 Aligned_cols=77 Identities=14% Similarity=0.187 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccHH-HHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhHHHHHHHhHHHHHHHH
Q 006621 475 AKSQLSKSLGTLHDCISSMTLRASQA-SLLHKQKRLKMHVNELGTLIGEADVEPNFGFLPFHSACYSKLLVSLVKMVHLL 553 (638)
Q Consensus 475 ar~~L~~~l~~l~~c~~~~~~~~~~~-~~~~~~~~l~~~l~~l~~l~~EA~~EP~fW~~pF~~~~Y~Kvl~Sl~RmldLL 553 (638)
-+..+...++.+..++..++...... ++.+.+..+......+.+...++. ...-+.++.+.++..++++
T Consensus 303 ~~~~l~~~~~~~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~----------~~~~~~~~~~~l~~~i~~~ 372 (503)
T KOG2273|consen 303 RRRELASNLAELGKALAQLSALEGETDELSEALSGLAKVIESLSKLLEKLT----------AEKDSKKLAEQLREYIRYL 372 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhh----------hhhhHHHhHHHHHHHHHHH
Confidence 34444444555555555544322223 555666777777777777777764 4445566667777666665
Q ss_pred HHHHHHHH
Q 006621 554 HFCSYSIG 561 (638)
Q Consensus 554 ~~~~~a~~ 561 (638)
...-...+
T Consensus 373 ~~~k~~~~ 380 (503)
T KOG2273|consen 373 ESVKSLFE 380 (503)
T ss_pred HHHHHHHH
Confidence 54443333
No 47
>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
Probab=25.71 E-value=48 Score=38.22 Aligned_cols=33 Identities=33% Similarity=0.420 Sum_probs=27.3
Q ss_pred hhhhcCCCCCCCCCchhHHHHHHHhHHHHHHHHHHHH
Q 006621 521 GEADVEPNFGFLPFHSACYSKLLVSLVKMVHLLHFCS 557 (638)
Q Consensus 521 ~EA~~EP~fW~~pF~~~~Y~Kvl~Sl~RmldLL~~~~ 557 (638)
++...||- |+.|++.. |.|.+.| +++|+-....
T Consensus 393 s~~~gE~~-WrLPl~~~-y~~~l~S--~~ADl~N~~~ 425 (485)
T COG0260 393 SEETGEPL-WRLPLHEE-YRKQLKS--NFADLANIGG 425 (485)
T ss_pred HHHcCCcc-ccCCCCHH-HHhhcCC--cchhhhcCCC
Confidence 45566775 99999988 9999999 9999987654
No 48
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=25.25 E-value=3.5e+02 Score=26.94 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=25.7
Q ss_pred hhhhhccchhhHHHHHHhhhhhhhhHhhhhhhccHHHHHHHHhh
Q 006621 576 KEDVQKLDGDVKLVKEMACSSIKCFNDDITTIKSLAILEKELER 619 (638)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 619 (638)
++|.+.+..|.+.|++.+...-+-++.+ -..++.|++++++
T Consensus 134 ~~f~~~l~~D~~~l~~~~~~l~~~l~~~---~g~I~~L~~~I~~ 174 (184)
T PF05791_consen 134 NDFKDKLQKDSRNLKTDVDELQSILAGE---NGDIPQLQKQIEN 174 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT---T--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhcc---cCCHHHHHHHHHH
Confidence 5556666677777776665555555522 2478888999876
No 49
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=25.07 E-value=6.9e+02 Score=24.83 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=11.0
Q ss_pred chhhHHHHHHhhhhhhhhH
Q 006621 583 DGDVKLVKEMACSSIKCFN 601 (638)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~ 601 (638)
+.|.+..++....+++-++
T Consensus 155 ~~~~~~~l~e~~~~L~~l~ 173 (199)
T PF10112_consen 155 SEEIKQSLEEIEETLDTLN 173 (199)
T ss_pred ChhHHHHHHHHHHHHHHHH
Confidence 4555555555666666555
No 50
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=24.32 E-value=8.5e+02 Score=26.80 Aligned_cols=126 Identities=20% Similarity=0.235 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhh-h-ccHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhHHHHHHHhHHHHHHH
Q 006621 475 AKSQLSKSLGTLHDCISSMTL-R-ASQASLLHKQKRLKMHVNELGTLIGEADVEPNFGFLPFHSACYSKLLVSLVKMVHL 552 (638)
Q Consensus 475 ar~~L~~~l~~l~~c~~~~~~-~-~~~~~~~~~~~~l~~~l~~l~~l~~EA~~EP~fW~~pF~~~~Y~Kvl~Sl~RmldL 552 (638)
+-.+|.++.+-||+|.-+++- . .-+.++..-.++++..-++|+.++.|=+. .=|..+
T Consensus 151 lg~nIEKSvKDLqRctvSL~RYr~~lkee~d~S~k~ik~~F~~l~~cL~dREv---------------------aLl~Em 209 (302)
T PF07139_consen 151 LGPNIEKSVKDLQRCTVSLTRYRVVLKEEMDSSIKKIKQTFAELQSCLMDREV---------------------ALLAEM 209 (302)
T ss_pred cCccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHH
Confidence 346788889999999887751 1 11456666678888888888888855332 223444
Q ss_pred HHHHHHHHHHHHHhhhhhccchhhhhhhccchhhHHHHHHhhhhhhhhHhhhhhhccHHHHHHHHhhhcCCCCccccc
Q 006621 553 LHFCSYSIGFLEQESQKIDKASWKEDVQKLDGDVKLVKEMACSSIKCFNDDITTIKSLAILEKELERKKINQWDFGQM 630 (638)
Q Consensus 553 L~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~~~ 630 (638)
--+-..||++|..+.+|- +|+-..-+.=..---+-+. -|--||-..-|-.+.+.||-+-.==.||+|+|
T Consensus 210 dkVK~EAmeiL~aRqkkA-----eeLkrltd~A~~MsE~Ql~----ELRadIK~fvs~rk~de~lg~~~rf~~d~~~l 278 (302)
T PF07139_consen 210 DKVKAEAMEILDARQKKA-----EELKRLTDRASQMSEEQLA----ELRADIKHFVSERKYDEELGRAARFTCDPEQL 278 (302)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhcCHHHHH----HHHHHHHHHhhhhhhHHHHhHhhhcccCHHHH
Confidence 455678888888887666 2222211111111111111 11112323336677777776633226887775
No 51
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=23.81 E-value=36 Score=29.97 Aligned_cols=12 Identities=17% Similarity=0.421 Sum_probs=5.8
Q ss_pred hhhhhhhHhhhh
Q 006621 594 CSSIKCFNDDIT 605 (638)
Q Consensus 594 ~~~~~~~~~~~~ 605 (638)
..+|+.||||+.
T Consensus 39 K~sirrLeqevn 50 (79)
T PF09036_consen 39 KASIRRLEQEVN 50 (79)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344455555544
No 52
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=23.67 E-value=6.9e+02 Score=24.32 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 006621 449 IVETFIGLTCTIIGELLFQS 468 (638)
Q Consensus 449 i~Et~IGl~~~i~Velli~P 468 (638)
++|.+.|-+.+.+++-++-+
T Consensus 2 ~~eL~~gaalG~~~~eLlk~ 21 (147)
T PF05659_consen 2 IAELVGGAALGAVFGELLKA 21 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56777788888777777766
No 53
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.12 E-value=7.1e+02 Score=24.28 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 006621 447 ARIVETFIGLTCTIIGELLF 466 (638)
Q Consensus 447 aRi~Et~IGl~~~i~Velli 466 (638)
.-++=..+|++++.+.-..+
T Consensus 41 lg~~~lAlg~vL~~~g~~~~ 60 (191)
T PF04156_consen 41 LGIALLALGVVLLSLGLLCL 60 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444556666655555444
No 54
>cd04759 Rib_hydrolase ADP-ribosyl cyclase (also known as cyclic ADP-ribose hydrolase or CD38) synthesizes the second messenger cyclic-ADP ribose (cADPR), which in turn releases calcium from internal stores. Mammals possess two membrane proteins, CD38 and BST-1/CD157, which exhibit ADP-ribosyl cyclase function, as well as intracellular soluble ADP-ribose cyclases. CD38 is involved in differentiation, adhesion, and cell proliferation, as well as diseases such as AIDS, diabetes, and B-cell chronic lymphocytic leukemia. The extramembrane domain of CD38 acts as a multifunctional enzyme and can synthesize cADPR from NAD+, hydrolyze NAD+, and cADPR to ADPR, as well as catalyze the exchange of the nicotinamide group of NADP+ with nicotinic acid under acidic conditions to yield NAADP+ (nicotinic acid-adenine dinucleotide phosphate), a metabolite involved in Ca2+ mobilization from acidic stores.
Probab=22.70 E-value=39 Score=35.66 Aligned_cols=29 Identities=34% Similarity=0.619 Sum_probs=26.1
Q ss_pred cHHHHHHHHhhhcCCCCc-cccccccccccC
Q 006621 609 SLAILEKELERKKINQWD-FGQMGEVLYLQC 638 (638)
Q Consensus 609 ~~~~~e~~~~~~~~~~~d-~~~~~~~~~~~~ 638 (638)
|++.|++.|+++|| ++. .|.-.+|..|||
T Consensus 204 Si~~L~~~l~~~ni-~~sC~dn~r~v~~lqC 233 (242)
T cd04759 204 SIKELESILKKRNI-QFSCIDNYRPVKFLQC 233 (242)
T ss_pred hHHHHHHHHHHcCC-ceEEecCcHHHHHHHh
Confidence 89999999999999 877 788889999998
No 55
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=22.50 E-value=1.6e+02 Score=31.44 Aligned_cols=97 Identities=16% Similarity=0.233 Sum_probs=51.6
Q ss_pred Hhhccccccccc-hhhhhheeeeeccccCCChhHHHH--H-HHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHH
Q 006621 411 LRHGRMYGQGGG-ISAVIGAVLILGRKSLGPPEEFAI--A-RIVETFIGLTCTIIGELLFQSTRASTLAKSQLSKSLGTL 486 (638)
Q Consensus 411 l~~sr~Yg~agg-vaA~~aaivlLg~~~~~~p~~fA~--a-Ri~Et~IGl~~~i~Velli~P~RA~~lar~~L~~~l~~l 486 (638)
+..-..|.|+.| +.++++-|..|++-+ +|+...- + =++=|+-|+++ ..+++-|- +..++.+..+-....
T Consensus 151 ~~~~g~~APafGmiGTviGLI~mL~~L~--dp~~IG~~mAvAlvtTlYGv~~---Anlif~Pi--A~kL~~~~~~e~~~~ 223 (271)
T PRK06926 151 FEKAGEYAPAWGMIGTLVGLVLMLKNLN--DPSTLGPNMAIALLTTLYGTLL---ANLVFLPI--AAKLEEKTEEEVFVK 223 (271)
T ss_pred HHHHHHHchHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--HHHHHHHHHHHHHHH
Confidence 333445888876 889999999998775 3654322 1 34556666554 45667774 233333333333333
Q ss_pred HHHHhhhhhhccHHHHHHHHHHHHHHHH
Q 006621 487 HDCISSMTLRASQASLLHKQKRLKMHVN 514 (638)
Q Consensus 487 ~~c~~~~~~~~~~~~~~~~~~~l~~~l~ 514 (638)
+-.++-+.......+.+..+++|..-+.
T Consensus 224 ~~i~eGilai~~G~nP~~ieekL~~~l~ 251 (271)
T PRK06926 224 QVIIEGVIGVQSGQNPRILEEKLSVFSS 251 (271)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHhCC
Confidence 3333322222233455555555555553
No 56
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=22.29 E-value=7.4e+02 Score=29.51 Aligned_cols=95 Identities=19% Similarity=0.285 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCCCCchhHHHHHHHhHH----HHHHHHHHHHHHHHHHHHhhhhhccchhhhhhhccc
Q 006621 508 RLKMHVNELGTLIGEADVEPNFGFLPFHSACYSKLLVSLV----KMVHLLHFCSYSIGFLEQESQKIDKASWKEDVQKLD 583 (638)
Q Consensus 508 ~l~~~l~~l~~l~~EA~~EP~fW~~pF~~~~Y~Kvl~Sl~----RmldLL~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 583 (638)
.++.+-.+|..-+.|++.+|+ =.+|++ +|-|=..=+-..+.-+.+.+|.. ..-+.++.
T Consensus 239 ~l~~~n~~l~e~i~e~ek~~~-------------~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~-----~~~l~~l~ 300 (581)
T KOG0995|consen 239 DLKKTNRELEEMINEREKDPG-------------KEESLREKKARLQDDVNKFQAYVSQMKSKKQHM-----EKKLEMLK 300 (581)
T ss_pred HHHHHHHHHHHHHHHHhcCcc-------------hHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHH-----HHHHHHHH
Confidence 344444556666668888887 223332 24444444445555555555444 22233333
Q ss_pred hhhHHHHHHhhhhhhhhHhhhhhhc-cHHHHHHHHhhhcCCCCcccccc
Q 006621 584 GDVKLVKEMACSSIKCFNDDITTIK-SLAILEKELERKKINQWDFGQMG 631 (638)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~d~~~~~ 631 (638)
.+. +--|.|+..++ --+.|-|++|+.+|+..|++.|.
T Consensus 301 ~Ei-----------e~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn 338 (581)
T KOG0995|consen 301 SEI-----------EEKEEEIEKLQKENDELKKQIELQGISGEDVERMN 338 (581)
T ss_pred HHH-----------HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 333 33333454444 24567788888888888888874
No 57
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=22.16 E-value=1.7e+02 Score=30.18 Aligned_cols=74 Identities=18% Similarity=0.130 Sum_probs=36.7
Q ss_pred CCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhhccchhhHHHHHHhhhhhhhhHhhhhh
Q 006621 530 GFLPFHSACYSKLLVSLVKMVHLLHFCSYSIGFLEQESQKIDKASWKEDVQKLDGDVKLVKEMACSSIKCFNDDITT 606 (638)
Q Consensus 530 W~~pF~~~~Y~Kvl~Sl~RmldLL~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (638)
|+.-=-...|-|+-.+..+--.-.+-.-.-.+.|+|.+||- .+-.--.-..|.+-+.-.|+ ++++|+||+.+-.
T Consensus 97 w~d~q~st~y~kt~~~~g~~~~~vy~~~~tqetlSqagQKt-saa~ssvgs~Is~Kl~dmkN--S~tfkSfE~~vgt 170 (208)
T KOG4010|consen 97 WKDVQASTAYVKTSQSVGTFTKTVYEAPLTQETLSQAGQKT-SAAFSSVGSAISRKLGDMKN--SATFKSFEEKVGT 170 (208)
T ss_pred HhhhhhHHHHHHhhhhhccccceeeecccchhhHHhhhHHH-HHHHHHHhHHHHHHHhcccc--cHHHHHHHHHHhh
Confidence 55444455566665444332221111113345666777766 33323444444444444433 7889999955443
No 58
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=22.01 E-value=5.6e+02 Score=28.71 Aligned_cols=29 Identities=14% Similarity=0.070 Sum_probs=18.2
Q ss_pred cCCCCCCCCCchhHHHHHHHhHHHHHHHHHHH
Q 006621 525 VEPNFGFLPFHSACYSKLLVSLVKMVHLLHFC 556 (638)
Q Consensus 525 ~EP~fW~~pF~~~~Y~Kvl~Sl~RmldLL~~~ 556 (638)
.+|+||..| ..|.++..-++++...+..+
T Consensus 40 ~~p~~w~d~---~~~~~~~ke~~~l~~~v~~~ 68 (364)
T TIGR00020 40 EDPNFWNDQ---ERAQAVIKERSSLEAVLDTL 68 (364)
T ss_pred cCCccccCH---HHHHHHHHHHHHHHHHHHHH
Confidence 679999998 55666655544444444333
No 59
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=21.83 E-value=9.2e+02 Score=28.76 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhh------hccHHHHHHH-HHHHHHHHHHHHHHH
Q 006621 471 ASTLAKSQLSKSLGTLHDCISSMTL------RASQASLLHK-QKRLKMHVNELGTLI 520 (638)
Q Consensus 471 A~~lar~~L~~~l~~l~~c~~~~~~------~~~~~~~~~~-~~~l~~~l~~l~~l~ 520 (638)
+.+.|-.+|.+||+.+.+-++..-+ .++....+++ +.+||..|..|+++=
T Consensus 2 ~~RKLq~eIdr~lkKv~Egve~Fd~i~ek~~~~~n~sqkeK~e~DLKkEIKKLQRlR 58 (575)
T KOG2150|consen 2 AKRKLQQEIDRCLKKVDEGVEIFDEIYEKLHSANNVSQKEKLESDLKKEIKKLQRLR 58 (575)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 4566888999999999976654421 1222344443 677777777776664
No 60
>TIGR00153 conserved hypothetical protein TIGR00153. An apparent homolog with a suggested function is Pit accessory protein from Sinorhizobium meliloti, which may be involved in phosphate (Pi) transport.
Probab=21.44 E-value=8.4e+02 Score=24.50 Aligned_cols=64 Identities=11% Similarity=0.109 Sum_probs=41.4
Q ss_pred CCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hhhhccchhhhhhhccchhhHHHHHHhhh
Q 006621 531 FLPFHSACYSKLLVSLVKMVHLLHFCSYSIGFLEQE-SQKIDKASWKEDVQKLDGDVKLVKEMACS 595 (638)
Q Consensus 531 ~~pF~~~~Y~Kvl~Sl~RmldLL~~~~~a~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (638)
..||.-+--..+...+..++|.+.-.++-+....-. .+.+ ....+++.+.+.+-.+..++.+..
T Consensus 75 itP~dReDi~~L~~~lD~I~D~i~~~a~~l~l~~~~~~~~l-~~~~~~l~~~i~~~~~~l~~av~~ 139 (216)
T TIGR00153 75 FLPNDRRDLLELAELLDEILDSLEHAAMLYELRKFEFPEEL-RDEFLLVLKITVDMIQHLHRVVEV 139 (216)
T ss_pred cCcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888878888888888888888886655533221 1111 234466666666666666666655
No 61
>PRK06746 peptide chain release factor 2; Provisional
Probab=21.17 E-value=2e+02 Score=31.79 Aligned_cols=33 Identities=12% Similarity=-0.078 Sum_probs=18.3
Q ss_pred cCCCCCCCCCchhHHHHHHHhHHHHHHHHHHHH
Q 006621 525 VEPNFGFLPFHSACYSKLLVSLVKMVHLLHFCS 557 (638)
Q Consensus 525 ~EP~fW~~pF~~~~Y~Kvl~Sl~RmldLL~~~~ 557 (638)
++|.||..|=......|=+..+.++++...-+.
T Consensus 2 ~~~~fw~d~~~~~~~~ke~~~l~~~v~~~~~~~ 34 (326)
T PRK06746 2 MGAGFWDDQQGAQAVINEANALKDMVGKFRQLD 34 (326)
T ss_pred CCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999987544443343444444444444333
No 62
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=21.07 E-value=1.1e+02 Score=37.50 Aligned_cols=95 Identities=12% Similarity=0.144 Sum_probs=50.3
Q ss_pred HhcceehhhHhhhhhhhhccccc------ccchhhHHHHHHHHHHHhhccccccccchhhhhheeeeeccccC-C-ChhH
Q 006621 372 KAQGTVLGTVYGVLGCFLFEKLL------PIRFLFLFPWFIFTSFLRHGRMYGQGGGISAVIGAVLILGRKSL-G-PPEE 443 (638)
Q Consensus 372 R~~GTvlGaV~G~l~~f~~~~~~------~~~~l~L~~wi~fssfl~~sr~Yg~aggvaA~~aaivlLg~~~~-~-~p~~ 443 (638)
=+.|.++|.++|.++..+..... .-.++++.+-+++..|.-- ...|-.|-+|+|++++++ |+... . ....
T Consensus 212 i~~GiliG~vvG~l~~~Ll~~l~rr~~i~~esfla~~LaLAli~~gla-~lLggSGfLAVFVAGl~~-gn~~~~~~~~~~ 289 (810)
T TIGR00844 212 CIFGSILGCIIGYCGRKAIRFAEGKNIIDRESFLAFYLILALTCAGFG-SMLGVDDLLVSFFAGTAF-AWDGWFAQKTHE 289 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHH-hcccchhhhHHH
Confidence 34588899999998887764321 1234443333333332211 134555556666665554 43211 1 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Q 006621 444 FAIARIVETFIGLTCTIIGELLFQS 468 (638)
Q Consensus 444 fA~aRi~Et~IGl~~~i~Velli~P 468 (638)
..+...+|..+-++.|++.-..+.+
T Consensus 290 ~~f~e~ie~LLn~~lFVlLGa~L~~ 314 (810)
T TIGR00844 290 SNVSNVIDVLLNYAYFVYLGSILPW 314 (810)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhCH
Confidence 3355666666666777777776644
No 63
>PRK00182 tatB sec-independent translocase; Provisional
Probab=20.76 E-value=4.3e+02 Score=26.46 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=24.3
Q ss_pred HHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHhh
Q 006621 456 LTCTIIGELLFQSTRASTLAKSQLSKSLGTLHDCISS 492 (638)
Q Consensus 456 l~~~i~Velli~P~RA~~lar~~L~~~l~~l~~c~~~ 492 (638)
+++.|++=++|-|.|-..++| .+.+.++...+.+..
T Consensus 11 lvIlvIaLlVfGPerLP~~~r-~lg~~ir~~R~~~~~ 46 (160)
T PRK00182 11 LLLLIVGLIVIGPERLPRLIE-DVRAALLAARTAINN 46 (160)
T ss_pred HHHHHHHHHhcCchHHHHHHH-HHHHHHHHHHHHHHH
Confidence 356677778899998777775 355566666655554
No 64
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=20.43 E-value=3e+02 Score=29.61 Aligned_cols=55 Identities=29% Similarity=0.475 Sum_probs=34.8
Q ss_pred Hhhccccccccc-hhhhhheeeeeccccCCChhHHHHH---HHHHHHHHHHHHHHHHhhcccC
Q 006621 411 LRHGRMYGQGGG-ISAVIGAVLILGRKSLGPPEEFAIA---RIVETFIGLTCTIIGELLFQST 469 (638)
Q Consensus 411 l~~sr~Yg~agg-vaA~~aaivlLg~~~~~~p~~fA~a---Ri~Et~IGl~~~i~Velli~P~ 469 (638)
+..-..|.|+.| ++|+++-|..++.-+ ++|....-. =++=|+.|+.+ ..+++-|-
T Consensus 165 ~~~~g~~aPa~GiiGtvlGLI~~l~~l~-~dp~~lG~~iA~Alv~TlyGv~l---An~i~~Pi 223 (282)
T TIGR03818 165 LQKVADALPGFGIVAAVLGVVITMGSID-GPPEVLGVLIAAALVGTFLGILL---AYGFVGPL 223 (282)
T ss_pred HHHHHhhCchhhHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 344455878776 889999898887664 356653322 45566666654 45667774
No 65
>PRK03100 sec-independent translocase; Provisional
Probab=20.38 E-value=4e+02 Score=25.99 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=23.2
Q ss_pred HHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHhh
Q 006621 456 LTCTIIGELLFQSTRASTLAKSQLSKSLGTLHDCISS 492 (638)
Q Consensus 456 l~~~i~Velli~P~RA~~lar~~L~~~l~~l~~c~~~ 492 (638)
+++.|++=++|-|.|-..++| .+.+.++...+....
T Consensus 11 lvI~vVaLvv~GPkrLP~~~r-~lG~~vr~~R~~~~~ 46 (136)
T PRK03100 11 LVLVVAGLVILGPERLPGAIR-WTARALRQARDYASG 46 (136)
T ss_pred HHHHHHHHhhcCchHHHHHHH-HHHHHHHHHHHHHHH
Confidence 355666777889998777765 445556665554443
No 66
>COG1291 MotA Flagellar motor component [Cell motility and secretion]
Probab=20.38 E-value=1.9e+02 Score=31.04 Aligned_cols=64 Identities=23% Similarity=0.323 Sum_probs=40.2
Q ss_pred ccccccccc-hhhhhheeeeeccccCCChhHHHHH---HHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHH
Q 006621 414 GRMYGQGGG-ISAVIGAVLILGRKSLGPPEEFAIA---RIVETFIGLTCTIIGELLFQSTRASTLAKSQLSKSLG 484 (638)
Q Consensus 414 sr~Yg~agg-vaA~~aaivlLg~~~~~~p~~fA~a---Ri~Et~IGl~~~i~Velli~P~RA~~lar~~L~~~l~ 484 (638)
-..|-|+.| |+|+++.|..||.-++ |.+..-. =++-|+.|+.++ -.++.|- ++.+|++-.+..+
T Consensus 150 ~g~~aPa~GivgaV~GlI~~l~~l~~--p~~LG~~iA~Alv~T~~Gi~~a---y~~~~P~--a~kLk~~~~~e~~ 217 (266)
T COG1291 150 AGDYAPAFGIVGAVMGLIHALGNLDD--PAELGALIAAALVGTLYGIFLA---YGLFGPL--ANKLKQKSDEEVK 217 (266)
T ss_pred HHhhCchhhHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHHHHH---HHHHhHH--HHHHHHHHHHHHH
Confidence 345778776 9999999999987775 6654332 466677776553 4455663 3445554444333
No 67
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=20.31 E-value=7.9e+02 Score=28.87 Aligned_cols=67 Identities=24% Similarity=0.152 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccchhhhhhhccchhhHHHHHHhhhhhhhhHhhhhhhc-----cHHHHHHHHhh
Q 006621 548 KMVHLLHFCSYSIGFLEQESQKIDKASWKEDVQKLDGDVKLVKEMACSSIKCFNDDITTIK-----SLAILEKELER 619 (638)
Q Consensus 548 RmldLL~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~ 619 (638)
.+.||.+..-.+|-.++|.-|+. .--.+.+-.|+-.-++.+.+-+-.+.+++...| |+.+||++++|
T Consensus 541 el~~lnL~s~ts~l~~eq~vqs~-----~i~ld~~~~~~n~~r~~i~k~V~~v~~~~~~fk~~IQssledl~~~l~k 612 (622)
T COG5185 541 ELNDLNLLSKTSILDAEQLVQST-----EIKLDELKVDLNRKRYKIHKQVIHVIDITSKFKINIQSSLEDLENELGK 612 (622)
T ss_pred HHHHhhhhccchHhhHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHH
Confidence 45666666666666666666655 233455666666777777777777775655544 78888888864
No 68
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=20.18 E-value=1.3e+03 Score=26.22 Aligned_cols=46 Identities=15% Similarity=0.340 Sum_probs=23.0
Q ss_pred cccccc-hhhhhheeeeecc-ccCCChhHHHHHHHHHHHHHHHHHHHH
Q 006621 417 YGQGGG-ISAVIGAVLILGR-KSLGPPEEFAIARIVETFIGLTCTIIG 462 (638)
Q Consensus 417 Yg~agg-vaA~~aaivlLg~-~~~~~p~~fA~aRi~Et~IGl~~~i~V 462 (638)
||-.|+ ++++.+++++++. +..+++....+.=.+++..|+..+..+
T Consensus 223 ~g~~~a~l~~l~~~i~~i~~~~~~~~~~~l~~~l~~~~l~gi~lg~~i 270 (495)
T PRK11644 223 YGWQGALLATLLNAIALIASQTWHDHPVDLLLSLLAQSLTGLLLGAGI 270 (495)
T ss_pred cCccchHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 766665 4455555555543 333445444444445555555554443
Done!