Query 006621
Match_columns 638
No_of_seqs 59 out of 61
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 04:29:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006621.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006621hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d5a_X RF1, peptide chain rele 68.7 16 0.00056 38.8 9.1 94 505-622 4-97 (354)
2 1z23_A CRK-associated substrat 56.9 79 0.0027 30.2 10.6 74 500-575 14-119 (163)
3 3s84_A Apolipoprotein A-IV; fo 50.8 40 0.0014 34.3 8.1 44 572-622 226-269 (273)
4 3s84_A Apolipoprotein A-IV; fo 44.7 2.1E+02 0.0071 29.0 12.2 38 576-619 208-245 (273)
5 1gqe_A Release factor 2, RF2; 40.7 95 0.0033 33.1 9.2 53 507-563 28-80 (365)
6 1zbt_A RF-1, peptide chain rel 36.6 66 0.0023 34.4 7.3 53 507-563 20-72 (371)
7 3oj5_A Ferritin family protein 33.1 2.8E+02 0.0096 25.7 10.4 117 501-621 47-164 (189)
8 2b3t_B RF-1, peptide chain rel 31.8 33 0.0011 36.6 3.9 47 506-556 9-55 (360)
9 3fse_A Two-domain protein cont 28.0 3.1E+02 0.011 28.8 10.7 55 487-543 226-284 (365)
10 1k1f_A Breakpoint cluster regi 26.3 19 0.00066 29.8 0.8 22 597-618 28-50 (72)
11 1m1j_B Fibrinogen beta chain; 21.6 6.3E+02 0.022 27.7 11.8 20 504-523 93-112 (464)
No 1
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=68.74 E-value=16 Score=38.80 Aligned_cols=94 Identities=26% Similarity=0.258 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhhccch
Q 006621 505 KQKRLKMHVNELGTLIGEADVEPNFGFLPFHSACYSKLLVSLVKMVHLLHFCSYSIGFLEQESQKIDKASWKEDVQKLDG 584 (638)
Q Consensus 505 ~~~~l~~~l~~l~~l~~EA~~EP~fW~~pF~~~~Y~Kvl~Sl~RmldLL~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 584 (638)
+.+.+...+++|++.+ .+|+||..|=......|=+..+..+++...-+......++.. +++.+ |.
T Consensus 4 ~l~~~~~r~~el~~~~----~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~---------~el~~--D~ 68 (354)
T 3d5a_X 4 KLDRLEEEYRELEALL----SDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQA---------ESLLD--DP 68 (354)
T ss_dssp HHHHHTHHHHHHHHHT----TSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HTSTT--CH
T ss_pred HHHHHHHHHHHHHHHh----cCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhc--CH
Confidence 3455666677777665 469999986444444444455555555444443333333322 22222 44
Q ss_pred hhHHHHHHhhhhhhhhHhhhhhhccHHHHHHHHhhhcC
Q 006621 585 DVKLVKEMACSSIKCFNDDITTIKSLAILEKELERKKI 622 (638)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 622 (638)
| +++++..-++.++ +.+..+|++|+.-=+
T Consensus 69 e---~~~~a~~e~~~l~------~~~~~le~~l~~lLl 97 (354)
T 3d5a_X 69 E---LKEMAKAEREALL------ARKEALEKELERHLL 97 (354)
T ss_dssp H---HHHHHHHHHHHHH------HHHHHHHHHHHHHHS
T ss_pred H---HHHHHHHHHHHHH------HHHHHHHHHHHHhcC
Confidence 3 3444444444444 245677777765433
No 2
>1z23_A CRK-associated substrate; four-helix bundle, cell adhesion; NMR {Rattus norvegicus}
Probab=56.86 E-value=79 Score=30.21 Aligned_cols=74 Identities=16% Similarity=0.061 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCC-Cch--------hHHHHHHHhH-----------------------H
Q 006621 500 ASLLHKQKRLKMHVNELGTLIGEADVEPNFGFLP-FHS--------ACYSKLLVSL-----------------------V 547 (638)
Q Consensus 500 ~~~~~~~~~l~~~l~~l~~l~~EA~~EP~fW~~p-F~~--------~~Y~Kvl~Sl-----------------------~ 547 (638)
+.+.++|.++-..|+.|-.|++++.+-|+ |+.| =+- ..-++|-+|+ .
T Consensus 14 E~L~rLQ~~v~~sVs~Ll~fv~s~~~~~~-WR~~~~~le~~i~~i~~a~~~v~~Sl~efL~Farga~~nA~~~~d~~L~~ 92 (163)
T 1z23_A 14 ETLARLQQGVSTTVAHLLDLVGSASGPGG-WRSTSEPQEPPVQDLKAAVAAVHGAVHELLEFARSAVSSATHTSDRTLHA 92 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCCS-SCCSSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCcC-ccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHH
Confidence 44556788888899999999999888888 8876 111 1223444444 3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccchh
Q 006621 548 KMVHLLHFCSYSIGFLEQESQKIDKASW 575 (638)
Q Consensus 548 RmldLL~~~~~a~~~l~~~~~~~~~~~~ 575 (638)
||-+.|+-+.++-.+|.+.+|.+ +.++
T Consensus 93 kl~r~Lq~l~ds~qiL~~~~~~L-d~~~ 119 (163)
T 1z23_A 93 KLSRQLQKMEDVYQTLVVHGQVL-DSGR 119 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HCCS
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH-HccC
Confidence 44466777777777777777777 4443
No 3
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=50.80 E-value=40 Score=34.27 Aligned_cols=44 Identities=16% Similarity=0.165 Sum_probs=16.7
Q ss_pred cchhhhhhhccchhhHHHHHHhhhhhhhhHhhhhhhccHHHHHHHHhhhcC
Q 006621 572 KASWKEDVQKLDGDVKLVKEMACSSIKCFNDDITTIKSLAILEKELERKKI 622 (638)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 622 (638)
+..-.++...+...++-++.+++|..-.++ .++.++||.|. .++
T Consensus 226 ~p~~e~~~~~l~~~~e~l~~~l~~~~~~~~------~~~~~~~~d~~-~~~ 269 (273)
T 3s84_A 226 EPYGENFNKALVQQMEQLRQKLGPHAGDVE------GHLSFLEKDLR-DKV 269 (273)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHSCC--------------------------
T ss_pred HhhHHHHHHHHHHHHHHHHHHhCcchhhHH------hhhhHHHHHHH-HHh
Confidence 555566666666667777777776655555 36667888874 444
No 4
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=44.72 E-value=2.1e+02 Score=28.98 Aligned_cols=38 Identities=24% Similarity=0.181 Sum_probs=28.2
Q ss_pred hhhhhccchhhHHHHHHhhhhhhhhHhhhhhhccHHHHHHHHhh
Q 006621 576 KEDVQKLDGDVKLVKEMACSSIKCFNDDITTIKSLAILEKELER 619 (638)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 619 (638)
.++...++..++.|+..+.|-++-++ +++..++++++.
T Consensus 208 ~~~~~~~~qq~e~f~~~~~p~~e~~~------~~l~~~~e~l~~ 245 (273)
T 3s84_A 208 AELGGHLDQQVEEFRRRVEPYGENFN------KALVQQMEQLRQ 245 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHH------HHHHHHHHHHHH
Confidence 45556777888999999988888776 366677777753
No 5
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=40.70 E-value=95 Score=33.12 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 006621 507 KRLKMHVNELGTLIGEADVEPNFGFLPFHSACYSKLLVSLVKMVHLLHFCSYSIGFL 563 (638)
Q Consensus 507 ~~l~~~l~~l~~l~~EA~~EP~fW~~pF~~~~Y~Kvl~Sl~RmldLL~~~~~a~~~l 563 (638)
+.++..+++|++.+ .+|+||..|=......|=+..+..+++...-+......+
T Consensus 28 ~~~~~r~~el~~~~----~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~ 80 (365)
T 1gqe_A 28 DAKKERLEEVNAEL----EQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDV 80 (365)
T ss_dssp HHHHHHHHHHHHHH----HSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----cCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777665 459999986444444444444444454444443333333
No 6
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=36.59 E-value=66 Score=34.40 Aligned_cols=53 Identities=13% Similarity=0.073 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 006621 507 KRLKMHVNELGTLIGEADVEPNFGFLPFHSACYSKLLVSLVKMVHLLHFCSYSIGFL 563 (638)
Q Consensus 507 ~~l~~~l~~l~~l~~EA~~EP~fW~~pF~~~~Y~Kvl~Sl~RmldLL~~~~~a~~~l 563 (638)
+.+...+++|++.+ .+|+||..|=......|=+..+..+++...-+......+
T Consensus 20 ~~~~~r~~el~~~l----~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~ 72 (371)
T 1zbt_A 20 QAVEDRYEELGELL----SDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQNI 72 (371)
T ss_dssp HHHHHHHHHC------------------------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----cCCcchhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555544 569999997444444444455555555544444443333
No 7
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A
Probab=33.07 E-value=2.8e+02 Score=25.72 Aligned_cols=117 Identities=11% Similarity=0.029 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhh-hccchhhhhh
Q 006621 501 SLLHKQKRLKMHVNELGTLIGEADVEPNFGFLPFHSACYSKLLVSLVKMVHLLHFCSYSIGFLEQESQK-IDKASWKEDV 579 (638)
Q Consensus 501 ~~~~~~~~l~~~l~~l~~l~~EA~~EP~fW~~pF~~~~Y~Kvl~Sl~RmldLL~~~~~a~~~l~~~~~~-~~~~~~~~~~ 579 (638)
-.++..++.+.+...+-+.+.+-...|.+...+-+...+..+.+.+...++.-..+...+..+-....+ .|...-.-+.
T Consensus 47 ~f~~~a~ee~~Had~laeri~~lGg~p~~~~i~~~~~~~~~~~e~l~~~l~~E~~~~~~~~~l~~~A~~~~D~~t~~~l~ 126 (189)
T 3oj5_A 47 HFYSQAVEERNHAMMLVQHLLDRDLRVEIPGVDTVRNQFDRPREALALALDQERTVTDQVGRLTAVARDEGDFLGEQFMQ 126 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCeecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHH
Confidence 344556777888888889999889999987654444445567777777777766666655555443332 2233322233
Q ss_pred hccchhhHHHHHHhhhhhhhhHhhhhhhccHHHHHHHHhhhc
Q 006621 580 QKLDGDVKLVKEMACSSIKCFNDDITTIKSLAILEKELERKK 621 (638)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 621 (638)
.-++.+.++.+ ++...++.++ .+. ..+=.++|+|+++.
T Consensus 127 ~~l~eqe~~~~-~l~~~l~~l~-~~g--~~l~~~d~~l~~~~ 164 (189)
T 3oj5_A 127 WFLQEQIEEVA-LMATLVRVAD-RAG--ANLFELENFVAREV 164 (189)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHH-HHT--TCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-HHHHHHHHHH-HhC--chHhHHHHHHHHhh
Confidence 33333333322 2344444444 222 12556888888754
No 8
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=31.77 E-value=33 Score=36.60 Aligned_cols=47 Identities=13% Similarity=0.042 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhHHHHHHHhHHHHHHHHHHH
Q 006621 506 QKRLKMHVNELGTLIGEADVEPNFGFLPFHSACYSKLLVSLVKMVHLLHFC 556 (638)
Q Consensus 506 ~~~l~~~l~~l~~l~~EA~~EP~fW~~pF~~~~Y~Kvl~Sl~RmldLL~~~ 556 (638)
.+.+...+++|++.+. +|+||..|=......|=+..+..+++...-+
T Consensus 9 l~~~~~r~~el~~~~~----~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~ 55 (360)
T 2b3t_B 9 LEALHERHEEVQALLG----DAQTIADQERFRALSREYAQLSDVSRCFTDW 55 (360)
T ss_dssp SHHHHHHHHHHHHHHH----HHTTSSCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc----CCchhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777664 4999999866655555555555555544433
No 9
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=27.98 E-value=3.1e+02 Score=28.83 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=33.4
Q ss_pred HHHHhhhhhhcc----HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhHHHHHH
Q 006621 487 HDCISSMTLRAS----QASLLHKQKRLKMHVNELGTLIGEADVEPNFGFLPFHSACYSKLL 543 (638)
Q Consensus 487 ~~c~~~~~~~~~----~~~~~~~~~~l~~~l~~l~~l~~EA~~EP~fW~~pF~~~~Y~Kvl 543 (638)
.++++..+...+ ++-.++.+++=+.++..|++.+..=..+|. |-..+ ...|.++-
T Consensus 226 ~~a~e~~a~~~~d~~~~~~~~~i~~~~~~h~~~l~~~~~~~g~~~~-~~~~~-~~~~a~~~ 284 (365)
T 3fse_A 226 LEALEKYTEKESDVEAKALFQEMITNKQRHIEYLETYLTRLGEKPS-LSANI-ANQYAKVK 284 (365)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGG-GSCC----------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC-cCcch-hHHHHHHH
Confidence 355555544332 355567788888899999999999999998 76666 45565554
No 10
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=26.29 E-value=19 Score=29.83 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=10.6
Q ss_pred hhhhHhhhhhhc-cHHHHHHHHh
Q 006621 597 IKCFNDDITTIK-SLAILEKELE 618 (638)
Q Consensus 597 ~~~~~~~~~~~~-~~~~~e~~~~ 618 (638)
+.-+|||++.-| |+.+||.|+.
T Consensus 28 vgdiEqeLe~Ck~sIrrLE~evn 50 (72)
T 1k1f_A 28 VGDIEQELERAKASIRRLEQEVN 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Confidence 334444544422 5555555553
No 11
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=21.60 E-value=6.3e+02 Score=27.68 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 006621 504 HKQKRLKMHVNELGTLIGEA 523 (638)
Q Consensus 504 ~~~~~l~~~l~~l~~l~~EA 523 (638)
.-|+.++..|.+|+..+.+.
T Consensus 93 k~q~~V~~~LqeLe~~l~~l 112 (464)
T 1m1j_B 93 KQEKTVKPVLRDLKDRVAKF 112 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHhHHHHHHHHHHHH
Confidence 34566777777777766443
Done!