Query 006621
Match_columns 638
No_of_seqs 59 out of 61
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 04:29:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006621.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006621hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gqea_ e.38.1.1 (A:) Polypept 74.7 5 0.00036 40.1 9.5 40 507-553 25-64 (362)
2 d1lkia_ a.26.1.1 (A:) Leukemia 29.6 1.2E+02 0.0087 26.5 9.0 62 526-593 53-118 (172)
3 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 26.7 8.9 0.00064 29.6 0.8 24 596-619 27-51 (67)
4 d1isia_ c.23.14.3 (A:) Bone ma 19.6 11 0.00079 36.0 0.0 29 609-638 209-238 (250)
5 d1r12a_ c.23.14.3 (A:) ADP rib 19.2 10 0.00075 36.2 -0.2 29 609-638 210-239 (251)
6 d2b3tb1 e.38.1.1 (B:7-354) Pep 17.4 47 0.0034 32.4 4.3 44 509-556 2-45 (344)
7 d1v9da_ a.207.1.1 (A:) Diaphan 17.3 63 0.0046 30.6 5.1 66 543-620 156-231 (332)
8 d1wu3i_ a.26.1.3 (I:) Interfer 17.1 1.2E+02 0.0088 26.5 6.6 34 499-532 77-110 (161)
9 d2e74d2 f.23.12.1 (D:12-45) IS 16.5 16 0.0012 24.5 0.3 18 372-389 15-32 (34)
10 d2ef1a1 c.23.14.3 (A:45-291) A 15.9 14 0.0011 35.1 -0.1 30 608-638 213-243 (247)
No 1
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=74.75 E-value=5 Score=40.08 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCCCchhHHHHHHHhHHHHHHHH
Q 006621 507 KRLKMHVNELGTLIGEADVEPNFGFLPFHSACYSKLLVSLVKMVHLL 553 (638)
Q Consensus 507 ~~l~~~l~~l~~l~~EA~~EP~fW~~pF~~~~Y~Kvl~Sl~RmldLL 553 (638)
+.++..+++|++.+. .|+||..| ..|.|+..-.+++-+.+
T Consensus 25 d~kk~Rl~ELE~~ls----dP~fW~D~---~kAqkl~KE~s~L~~iV 64 (362)
T d1gqea_ 25 DAKKERLEEVNAELE----QPDVWNEP---ERAQALGKERSSLEAVV 64 (362)
T ss_dssp HHHHHHHHHHHHHHH----SGGGGGSH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc----CChhhhCH---HHHHHHHHHHHHHHHHH
Confidence 556667777777664 89999977 45555554444444443
No 2
>d1lkia_ a.26.1.1 (A:) Leukemia inhibitory factor (LIF) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.62 E-value=1.2e+02 Score=26.47 Aligned_cols=62 Identities=21% Similarity=0.371 Sum_probs=34.0
Q ss_pred CCCC-CCCCCchhHHHHHHHhHHHHHHHH---HHHHHHHHHHHHhhhhhccchhhhhhhccchhhHHHHHHh
Q 006621 526 EPNF-GFLPFHSACYSKLLVSLVKMVHLL---HFCSYSIGFLEQESQKIDKASWKEDVQKLDGDVKLVKEMA 593 (638)
Q Consensus 526 EP~f-W~~pF~~~~Y~Kvl~Sl~RmldLL---~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (638)
-||. -|||||..--+| .||+.|- -++.-++++...-...+ .+.=++++++++---++.+-.+
T Consensus 53 ~Pn~tdFPpFh~n~t~k-----~klVelYri~ayL~aSlgNiTrDQ~~L-NP~A~~L~~~L~~T~~~~RGLl 118 (172)
T d1lkia_ 53 APNMTDFPSFHGNGTEK-----TKLVELYRMVAYLSASLTNITRDQKVL-NPTAVSLQVKLNATIDVMRGLL 118 (172)
T ss_dssp CCCCTTSCCCCTTSCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCCCchH-----HHHHHHHHHHHHHccccccccchHhhh-CccHHHHHHHHHhHHHHHHHHH
Confidence 3677 899999876554 2344433 34444555555544444 4444555555555555444433
No 3
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.74 E-value=8.9 Score=29.63 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=14.2
Q ss_pred hhhhhHhhhhhhc-cHHHHHHHHhh
Q 006621 596 SIKCFNDDITTIK-SLAILEKELER 619 (638)
Q Consensus 596 ~~~~~~~~~~~~~-~~~~~e~~~~~ 619 (638)
++.-+|||+.+-| |+++||.++.+
T Consensus 27 sV~diE~eLerCk~~irrLeqel~~ 51 (67)
T d1k1fa_ 27 SVGDIEQELERAKASIRRLEQEVNQ 51 (67)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556665533 67777777754
No 4
>d1isia_ c.23.14.3 (A:) Bone marror stromal cell antigen 1, BST-1/CD157 (ADP ribosyl cyclase-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.60 E-value=11 Score=36.00 Aligned_cols=29 Identities=34% Similarity=0.572 Sum_probs=23.1
Q ss_pred cHHHHHHHHhhhcCCCCc-cccccccccccC
Q 006621 609 SLAILEKELERKKINQWD-FGQMGEVLYLQC 638 (638)
Q Consensus 609 ~~~~~e~~~~~~~~~~~d-~~~~~~~~~~~~ 638 (638)
|++.||+.++++|| ... +|+-.+|+.|||
T Consensus 209 Sv~~L~~~l~~~~~-~~~C~d~~r~v~~lqC 238 (250)
T d1isia_ 209 SMKVLEKRLKDMGF-QYSCINDYRPVKLLQC 238 (250)
T ss_dssp HHHHHHHHHHHTTC-CEEEEETCHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-ceEecCCCcHhHHHHh
Confidence 77888888888888 666 678888888887
No 5
>d1r12a_ c.23.14.3 (A:) ADP ribosyl cyclase {California sea hare (Aplysia californica) [TaxId: 6500]}
Probab=19.18 E-value=10 Score=36.20 Aligned_cols=29 Identities=38% Similarity=0.547 Sum_probs=19.3
Q ss_pred cHHHHHHHHhhhcCCCCc-cccccccccccC
Q 006621 609 SLAILEKELERKKINQWD-FGQMGEVLYLQC 638 (638)
Q Consensus 609 ~~~~~e~~~~~~~~~~~d-~~~~~~~~~~~~ 638 (638)
|++.||+.++++|| ... +|.-.+|+.|||
T Consensus 210 Sv~~L~~~l~~~~~-~~~C~dn~r~v~~lqC 239 (251)
T d1r12a_ 210 SLLDLEKLVKAKHF-AFDCVENPRAVLFLLC 239 (251)
T ss_dssp HHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-ceEeecCCchhHhhhh
Confidence 66666777766666 555 666666666666
No 6
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]}
Probab=17.37 E-value=47 Score=32.42 Aligned_cols=44 Identities=14% Similarity=0.052 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCCCchhHHHHHHHhHHHHHHHHHHH
Q 006621 509 LKMHVNELGTLIGEADVEPNFGFLPFHSACYSKLLVSLVKMVHLLHFC 556 (638)
Q Consensus 509 l~~~l~~l~~l~~EA~~EP~fW~~pF~~~~Y~Kvl~Sl~RmldLL~~~ 556 (638)
|+..+++|++.+. .|+||..|=...+..|=+.++.++++...-+
T Consensus 2 i~eR~eELe~~Ls----dPd~w~D~~kaqkLsKE~s~L~~iV~~~~~l 45 (344)
T d2b3tb1 2 LHERHEEVQALLG----DAQTIADQERFRALSREYAQLSDVSRCFTDW 45 (344)
T ss_dssp HHHHHHHHHHHHH----HHTTSSCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhh----CCcchhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777664 5999999977666666666666666655444
No 7
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.27 E-value=63 Score=30.60 Aligned_cols=66 Identities=20% Similarity=0.359 Sum_probs=46.7
Q ss_pred HHhHHHHHH---------HHHHHHHHHHHHHHhhhhhccchhhhhhhccchhhHHHHHHhhhhhhhhHhhhhhh-ccHHH
Q 006621 543 LVSLVKMVH---------LLHFCSYSIGFLEQESQKIDKASWKEDVQKLDGDVKLVKEMACSSIKCFNDDITTI-KSLAI 612 (638)
Q Consensus 543 l~Sl~Rmld---------LL~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 612 (638)
++|+.|+.| ||+|+.. .+++....+ ..+..||.+......-+++-+++++..+ +.+..
T Consensus 156 L~sL~kL~d~Ks~d~~~tLL~~iv~---~~~~~~p~l---------~~~~~eL~~v~~ask~~~~~l~~~~~~l~~~l~~ 223 (332)
T d1v9da_ 156 ISFLCKLRDTKSADQKMTLLHFLAE---LCENDHPEV---------LKFPDELAHVEKASRVSAENLQKSLDQMKKQIAD 223 (332)
T ss_dssp -CCHHHHHHSBCSSTTSBHHHHHHH---HHHHSCCTT---------SSGGGGCTTHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHhhccCCCCCccHHHHHHH---HHHHhCchh---------ccchhhhhhHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 689999988 7777753 444443222 4566777777777777888888888876 46888
Q ss_pred HHHHHhhh
Q 006621 613 LEKELERK 620 (638)
Q Consensus 613 ~e~~~~~~ 620 (638)
+++++++.
T Consensus 224 ~~~~l~~~ 231 (332)
T d1v9da_ 224 VERDVQNF 231 (332)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhc
Confidence 99999863
No 8
>d1wu3i_ a.26.1.3 (I:) Interferon-beta {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.12 E-value=1.2e+02 Score=26.48 Aligned_cols=34 Identities=15% Similarity=0.045 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCC
Q 006621 499 QASLLHKQKRLKMHVNELGTLIGEADVEPNFGFL 532 (638)
Q Consensus 499 ~~~~~~~~~~l~~~l~~l~~l~~EA~~EP~fW~~ 532 (638)
++.++..+..|-.++..|+.++.+.+.|+..|..
T Consensus 77 et~le~fl~~L~~Ql~~Le~Cl~~~~~~~~~~~~ 110 (161)
T d1wu3i_ 77 ETIVVRLLDELHQQTVFLKTVLEEKQEERLTWEM 110 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence 4666677899999999999999887666554543
No 9
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=16.45 E-value=16 Score=24.50 Aligned_cols=18 Identities=28% Similarity=0.702 Sum_probs=13.8
Q ss_pred HhcceehhhHhhhhhhhh
Q 006621 372 KAQGTVLGTVYGVLGCFL 389 (638)
Q Consensus 372 R~~GTvlGaV~G~l~~f~ 389 (638)
-..||++|+.|+++=-|+
T Consensus 15 t~tg~alg~lypvvkyfi 32 (34)
T d2e74d2 15 TVTGVALGALYPLVKYFI 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHhhhhhHHhhcC
Confidence 357999999999876553
No 10
>d2ef1a1 c.23.14.3 (A:45-291) ADP ribosyl cyclase {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.94 E-value=14 Score=35.05 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=26.6
Q ss_pred ccHHHHHHHHhhhcCCCCc-cccccccccccC
Q 006621 608 KSLAILEKELERKKINQWD-FGQMGEVLYLQC 638 (638)
Q Consensus 608 ~~~~~~e~~~~~~~~~~~d-~~~~~~~~~~~~ 638 (638)
.|+..||+.++++|| ... +|.--+|.+|||
T Consensus 213 ~Sv~~L~~~l~~~~i-~~~C~d~pr~v~~lqC 243 (247)
T d2ef1a1 213 PTIKELESIISKRNI-QFSCKNIYRPDKFLQC 243 (247)
T ss_dssp HHHHHHHHHHHHTTC-EEEEEEECCHHHHHHH
T ss_pred cHHHHHHHHHHHcCC-ceEEecCCcHHHhhhh
Confidence 389999999999999 777 888899999998
Done!