BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006622
         (638 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2UUT|A Chain A, The 2.4 Angstrom Resolution Structure Of The D346g Mutant
           Of The Sapporo Virus Rdrp Polymerase
          Length = 508

 Score = 31.6 bits (70), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 10/89 (11%)

Query: 329 LAYLKYEASKNTSSTAESFFSKQRNVAIAFSLVEKIIRLISNIAE---------SEGGLI 379
           L Y K+++++N + TA S    +R  A    +V   I  +S+ AE         + GGL 
Sbjct: 241 LDYSKWDSTQNPAVTAASLAILER-FAEPHPIVSCAIEALSSPAEGYVNDIKFVTRGGLP 299

Query: 380 DDNTFMKVMNGLNETIGVVLEYLQDAKEH 408
               F  V+N +N  I V    LQ  + H
Sbjct: 300 SGMPFTSVVNSINHMIYVAAAILQAYESH 328


>pdb|2UUW|A Chain A, 2.75 Angstrom Structure Of The D347g D348g Mutant
           Structure Of Sapporo Virus Rdrp Polymerase
 pdb|2WK4|A Chain A, Dimeric Structure Of D347g D348g Mutant Of The
           Sapporovirus Rna Dependent Rna Polymerase
 pdb|2WK4|B Chain B, Dimeric Structure Of D347g D348g Mutant Of The
           Sapporovirus Rna Dependent Rna Polymerase
          Length = 515

 Score = 31.6 bits (70), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 10/89 (11%)

Query: 329 LAYLKYEASKNTSSTAESFFSKQRNVAIAFSLVEKIIRLISNIAE---------SEGGLI 379
           L Y K+++++N + TA S    +R  A    +V   I  +S+ AE         + GGL 
Sbjct: 241 LDYSKWDSTQNPAVTAASLAILER-FAEPHPIVSCAIEALSSPAEGYVNDIKFVTRGGLP 299

Query: 380 DDNTFMKVMNGLNETIGVVLEYLQDAKEH 408
               F  V+N +N  I V    LQ  + H
Sbjct: 300 SGMPFTSVVNSINHMIYVAAAILQAYESH 328


>pdb|2CKW|A Chain A, The 2.3 A Resolution Structure Of The Sapporo Virus Rna
           Dependant Rna Polymerase
          Length = 515

 Score = 31.6 bits (70), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 10/89 (11%)

Query: 329 LAYLKYEASKNTSSTAESFFSKQRNVAIAFSLVEKIIRLISNIAE---------SEGGLI 379
           L Y K+++++N + TA S    +R  A    +V   I  +S+ AE         + GGL 
Sbjct: 241 LDYSKWDSTQNPAVTAASLAILER-FAEPHPIVSCAIEALSSPAEGYVNDIKFVTRGGLP 299

Query: 380 DDNTFMKVMNGLNETIGVVLEYLQDAKEH 408
               F  V+N +N  I V    LQ  + H
Sbjct: 300 SGMPFTSVVNSINHMIYVAAAILQAYESH 328


>pdb|2C8U|A Chain A, Structure Of R21q Mutant Of Sh28gst
 pdb|2C8U|B Chain B, Structure Of R21q Mutant Of Sh28gst
          Length = 211

 Score = 28.9 bits (63), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 10/133 (7%)

Query: 260 VVAILQNRVAPAEKLQALILAESIVSIKGEEWLIGKIDLPDIQDSIPSDRCLLLVLESSR 319
           +  I  N    AE +Q  ++A     +  E+  I   D P I+ +IP  R   + +  + 
Sbjct: 6   IKVIYFNGRGRAESIQMTLVA---AGVNYEDERISFQDWPKIKPTIPGGRLPAVKITDNH 62

Query: 320 VEIAVLLNELAYLKYEASKN--TSSTAESFFSKQRNVAIAFSLVEKIIRLISNIAESEGG 377
             +  ++  LA  +Y A K+     T E +++ ++ +  A  L  +  + +    E +  
Sbjct: 63  GHVKWMVESLAIARYMAKKHHMMGGTEEEYYNVEKLIGQAEDLEHEYYKTLMKPEEEKQK 122

Query: 378 LIDDNTFMKVMNG 390
           +I +     ++NG
Sbjct: 123 IIKE-----ILNG 130


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,866,527
Number of Sequences: 62578
Number of extensions: 638069
Number of successful extensions: 1448
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1446
Number of HSP's gapped (non-prelim): 9
length of query: 638
length of database: 14,973,337
effective HSP length: 105
effective length of query: 533
effective length of database: 8,402,647
effective search space: 4478610851
effective search space used: 4478610851
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)