BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006622
(638 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q640K1|NCDN_XENLA Neurochondrin OS=Xenopus laevis GN=ncdn PE=2 SV=1
Length = 720
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 120/507 (23%), Positives = 227/507 (44%), Gaps = 83/507 (16%)
Query: 17 SLDDCLKLLK-GERDEQRLAGLLVVTKFCKGDDA--VSLRKIYDAVGPRFLDRLLRTGLG 73
+L+ CLK+L+ + D ++ A LL+VTK + + + R+I+DAVG F +RLL +
Sbjct: 16 ALEKCLKVLQEAQTDNEQFAALLLVTKCAQAQEINNETRRRIFDAVGFTFPNRLLFS--- 72
Query: 74 KGINSGNSSENRDAYLQLSVTVLAAFCRVPEIASSEDMVSKVPPILELM--LKESGT--- 128
NS ++ + L +T+LA F P +A +V+K+P E + +SG
Sbjct: 73 ---NSVPEGCPQNLFKSLGITLLACFSTDPVLAVHPQVVNKIPIFNETINISCQSGNKEV 129
Query: 129 -SILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLS 187
S++E+ Y+ L + A+ G L G + L + + + E A+++L +L+
Sbjct: 130 VSMVEDAYQCLLGIL-ASPQGPKNLLSHGSIPYLC---QAYMNRNHFWEKALQILTSLLT 185
Query: 188 KLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVM 247
L + ++L ++T ++ EF KF+ LL L + ++
Sbjct: 186 VLPPKCWKKS-CTDLQLLLTRLSEEFGKEEGEWKFQLADLLPIFLPPS---------PIL 235
Query: 248 PDSKWSMY----MRVGVVAILQNRVAPAEKLQALILAESIVSIKGEEWLIGKIDLPDIQD 303
++ W + G++ IL N+++ +++ AL LA + + G W++ ++
Sbjct: 236 LETSWGKQCLKQLCKGLLKILSNKLSISQRDPALKLAACLANSYGSSWIMA-------EN 288
Query: 304 SIPSDRCLLLVLESSRVEIAVLLNELAYLKYEASKNTSSTAESFFSKQRNVAIAFSLVEK 363
+ R L L++ + VE+ + L E E S+Q + ++LVE
Sbjct: 289 KVVRSRFLALIVNLACVEVRMALEE---------------PEPLTSRQSVITACYALVE- 332
Query: 364 IIRLISNIAESEGGLIDDNTFMKVMNGLNETIGVVLEYLQDAKEHERKKGNDLLASVRLV 423
+ +++ E + ++ ++++ + E ++ YLQ E+++ LLASVRL+
Sbjct: 333 -MGILACTKEEKHPVLGKEQKLQLIGVMQEACAAIIYYLQQVG-WEKQEDPFLLASVRLL 390
Query: 424 GSYLAETPHACKEKVRELLQ---------HMLSIEGEDEPS----------------PFY 458
G++LAE K +V +LL H S+ P P
Sbjct: 391 GAWLAEETACLKLEVIQLLPFLVHYMRTCHQRSVICSKLPKEVSQVALLSNSWGNIWPGD 450
Query: 459 SVFFLLPMLCQTTMEIEGCKDLVSSGM 485
++ FLLP LC + E K L+S G+
Sbjct: 451 AIRFLLPALCHLSAEEVPRKVLISEGV 477
>sp|Q5ZIG0|NCDN_CHICK Neurochondrin OS=Gallus gallus GN=NCDN PE=2 SV=1
Length = 702
Score = 97.1 bits (240), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 135/544 (24%), Positives = 236/544 (43%), Gaps = 87/544 (15%)
Query: 17 SLDDCLKLLKGER-DEQRLAGLLVVTKFCK-GD-DAVSLRKIYDAVGPRFLDRLLRTGLG 73
+L CL++L+ R D ++LA LL+VTK + GD D+ + R+I+DA+G F +RLL +
Sbjct: 9 TLKKCLEVLRDARNDSEQLAALLLVTKAVRAGDLDSKTRRQIFDAIGFTFPNRLLSS--- 65
Query: 74 KGINSGNSSENRDAYLQLSVTVLAAFCRVPEIASSEDMVSKVPPILELML---KESGTSI 130
+ L +T+LA FC PE+A +++K+P +++L + TS+
Sbjct: 66 ---RQAPPGCPEHTFRALGLTLLACFCTEPELAGHSQVLNKIPTFADVLLSPCQPDCTSM 122
Query: 131 LEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKLS 190
+++ Y+ L V AT G + G L + +G E A+ LL +L+
Sbjct: 123 VDDAYQCLAAVL-ATPRGPREMVTKGAASALC---QAYVNGGYGSERALALLLGLLAVSE 178
Query: 191 LEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDS 250
+ D L +++ ++ EF + +FE LL + L V S
Sbjct: 179 AKCWQRDA-PHLLAVLSKLSEEFVRAEDGSQFELCELL-----PRFIPLSPPLAEVSQGS 232
Query: 251 KWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEEWLIGKIDLPDIQDSIPSDRC 310
+ + G+ +IL ++++ +++ AL LA S+ G EW IP+
Sbjct: 233 ECVRQLYKGLASILGSKLSQSQRDPALKLAASLTQACGSEW-------------IPAG-- 277
Query: 311 LLLVLESSRVEIAVLLNELAYLKYEASKNTSSTAESFFSKQRNVAIAFSLVEKIIRLISN 370
S+ + LL LA ++ + E K+ V + L+E I+
Sbjct: 278 ------STGSKFLALLVNLACVEVRLTLEEPEPLEV-EGKKEVVTACYVLIEMGIQ---E 327
Query: 371 IAESEGGLIDDNTFMKVMNGLNETIGVVLEYLQDAKEHERKKGNDLLASVRLVGSYLAET 430
+ E L+D+ M++M + E G V+ YL+ KE E + + ASVR++G+++AE
Sbjct: 328 CLKEEESLLDEAQRMQLMRIMEEAFGAVVFYLRQVKEEELQD-PFVFASVRILGAWMAEE 386
Query: 431 PHACKEKVRELLQHML---------------------------SIEGEDEPSPFYSVFFL 463
+ K+++ ELL ++ SI G+D ++ FL
Sbjct: 387 TSSLKQEICELLPFLVRYARKLFKEGGPAENLPQTAGLVSSDSSILGQD------ALRFL 440
Query: 464 LPMLCQTTMEIEGCKDLVSSGMYKAVAECLIKLIG-----PGRVTVEDDGCIFLACDTIL 518
LP C T E L+S G + + + G PG +T + L C L
Sbjct: 441 LPGFCHLTAEDRPRDILISEGAPALLCDYFLHQWGVLTSQPGSLTSTEMSLQTL-CGIFL 499
Query: 519 NLLL 522
NL++
Sbjct: 500 NLVV 503
>sp|Q2KJ97|NCDN_BOVIN Neurochondrin OS=Bos taurus GN=NCDN PE=2 SV=1
Length = 729
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 113/442 (25%), Positives = 197/442 (44%), Gaps = 62/442 (14%)
Query: 15 SPSLDDCLKLLK-GERDEQRLAGLLVVTKFCK-GD-DAVSLRKIYDAVGPRFLDRLLRTG 71
+P+L+ L L+ + D ++ A LL+VTK K GD DA + R+I+DAVG F +RLL T
Sbjct: 33 NPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIFDAVGFTFPNRLLTT- 91
Query: 72 LGKGINSGNSSENRDAYLQLSVTVLAAFCRVPEIASSEDMVSKVPPILELMLKESG---- 127
K G A L V +LA FC PE+A+ +++K+ PIL L G
Sbjct: 92 --KEAPDGCPDHVLRA---LGVALLACFCSDPELAAHPQVLNKI-PILSTFLTARGDPDD 145
Query: 128 ---TSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQL 184
S++++ Y+ L V T G L G + L G + L
Sbjct: 146 AARRSMVDDTYQCLTAVAG-TPRGPRHLIAGGTVSALCQAYLGHGYGFDQALALLVGLLA 204
Query: 185 MLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEAL 244
+ D L+ ++ ++ +F +A KFE LL L + + E L
Sbjct: 205 AAETQCWKEAEPDLLA----VLRGLSEDFQKAEDASKFELCQLLPLFLPP--TTVPSECL 258
Query: 245 RVMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEEWLIGKIDLPDIQDS 304
R ++ G+ IL ++++ ++ AL LA + G +W
Sbjct: 259 R---------DLQAGLARILGSKLSSWQRNPALKLAARLAHACGSDW------------- 296
Query: 305 IPSDRCLLLVLESSRVEIAVLLNELAYLKYEASKNTSSTAESFFSKQRNVAIAFSLVEKI 364
IP+ +S + LL LA ++ + + T K+ V ++L+E
Sbjct: 297 IPAG--------NSGSKFLALLVNLACVEVRLALEETGTE----VKEDVVTACYALMELG 344
Query: 365 IRLISNIAESEGGLIDDNTFMKVMNGLNETIGVVLEYLQDAKEHERKKGNDLLASVRLVG 424
I+ + +S L+ + +++++ + E IG V+ YLQ E++K + ASVR++G
Sbjct: 345 IQECTRCEQS---LLKEPQKVQLVSIMKEAIGAVIHYLQQVGP-EKQKEPFVFASVRILG 400
Query: 425 SYLAETPHACKEKVRELLQHML 446
++LAE + +++V +LL ++
Sbjct: 401 AWLAEETSSLRKEVCQLLPFLV 422
>sp|Q9Z0E0|NCDN_MOUSE Neurochondrin OS=Mus musculus GN=Ncdn PE=1 SV=1
Length = 729
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 113/442 (25%), Positives = 194/442 (43%), Gaps = 62/442 (14%)
Query: 15 SPSLDDCLKLLK-GERDEQRLAGLLVVTKFCK-GD-DAVSLRKIYDAVGPRFLDRLLRTG 71
+P+L+ L L+ + D ++ A LL+VTK K GD DA + R+I+DAVG F +RLL T
Sbjct: 33 NPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIFDAVGFTFPNRLLTT- 91
Query: 72 LGKGINSGNSSENRDAYLQLSVTVLAAFCRVPEIASSEDMVSKVPPILELMLKESG---- 127
K G A L V +LA FC PE+AS +++K+ PIL L G
Sbjct: 92 --KEAPDGCPDHVLRA---LGVALLACFCSDPELASHPQVLNKI-PILSTFLTARGDPDD 145
Query: 128 ---TSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQL 184
S++++ Y+ L V T G L G + L G + L
Sbjct: 146 AARRSMIDDTYQCLTAVAG-TPRGPRHLIAGGTVSALCQAYLGHGYGFDQALALLVGLLA 204
Query: 185 MLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEAL 244
+ D L+ ++ ++ +F +A KFE LL L
Sbjct: 205 AAETQCWKEAEPDLLA----VLRGLSEDFQRAEDASKFELCQLLPLFLPPTT-------- 252
Query: 245 RVMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEEWLIGKIDLPDIQDS 304
V P+ ++ G+ IL ++++ ++ AL LA + G +W
Sbjct: 253 -VPPECHRD--LQAGLARILGSKLSSWQRNPALKLAARLAHACGSDW------------- 296
Query: 305 IPSDRCLLLVLESSRVEIAVLLNELAYLKYEASKNTSSTAESFFSKQRNVAIAFSLVEKI 364
IP + SS + LL LA ++ + + T K+ V ++L+E
Sbjct: 297 IP--------VGSSGSKFLALLVNLACVEVRLALEETGTE----VKEDVVTACYALMELG 344
Query: 365 IRLISNIAESEGGLIDDNTFMKVMNGLNETIGVVLEYLQDAKEHERKKGNDLLASVRLVG 424
I+ + +S L+ + +++++ + E IG V+ YL E++K + ASVR++G
Sbjct: 345 IQECTRCEQS---LLKEPQKVQLVSIMKEAIGAVIHYLLQVGP-EKQKEPFVFASVRILG 400
Query: 425 SYLAETPHACKEKVRELLQHML 446
++LAE + +++V +LL ++
Sbjct: 401 AWLAEETSSLRKEVCQLLPFLV 422
>sp|Q9UBB6|NCDN_HUMAN Neurochondrin OS=Homo sapiens GN=NCDN PE=1 SV=1
Length = 729
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 112/442 (25%), Positives = 194/442 (43%), Gaps = 62/442 (14%)
Query: 15 SPSLDDCLKLLK-GERDEQRLAGLLVVTKFCK-GD-DAVSLRKIYDAVGPRFLDRLLRTG 71
+P+L+ L L+ + D ++ A LL+VTK K GD DA + R+I+DAVG F +RLL T
Sbjct: 33 NPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIFDAVGFTFPNRLLTT- 91
Query: 72 LGKGINSGNSSENRDAYLQLSVTVLAAFCRVPEIASSEDMVSKVPPILELMLKESG---- 127
K G A L V +LA FC PE+A+ +++K+ PIL L G
Sbjct: 92 --KEAPDGCPDHVLRA---LGVALLACFCSDPELAAHPQVLNKI-PILSTFLTARGDPDD 145
Query: 128 ---TSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQL 184
S++++ Y+ L V T G L G + L G + L
Sbjct: 146 AARRSMIDDTYQCLTAVAG-TPRGPRHLIAGGTVSALCQAYLGHGYGFDQALALLVGLLA 204
Query: 185 MLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEAL 244
+ D L+ ++ ++ +F +A KFE LL L
Sbjct: 205 AAETQCWKEAEPDLLA----VLRGLSEDFQKAEDASKFELCQLLPLFLPPT--------- 251
Query: 245 RVMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEEWLIGKIDLPDIQDS 304
V P+ ++ G+ IL ++++ ++ AL LA + G +W
Sbjct: 252 TVPPECYRD--LQAGLARILGSKLSSWQRNPALKLAARLAHACGSDW------------- 296
Query: 305 IPSDRCLLLVLESSRVEIAVLLNELAYLKYEASKNTSSTAESFFSKQRNVAIAFSLVEKI 364
IP+ SS + LL LA ++ + + T K+ V ++L+E
Sbjct: 297 IPAG--------SSGSKFLALLVNLACVEVRLALEETGTE----VKEDVVTACYALMELG 344
Query: 365 IRLISNIAESEGGLIDDNTFMKVMNGLNETIGVVLEYLQDAKEHERKKGNDLLASVRLVG 424
I+ + +S L+ + +++++ + E IG V+ YL E++K + ASVR++G
Sbjct: 345 IQECTRCEQS---LLKEPQKVQLVSVMKEAIGAVIHYLLQVGS-EKQKEPFVFASVRILG 400
Query: 425 SYLAETPHACKEKVRELLQHML 446
++LAE + +++V +LL ++
Sbjct: 401 AWLAEETSSLRKEVCQLLPFLV 422
>sp|O35095|NCDN_RAT Neurochondrin OS=Rattus norvegicus GN=Ncdn PE=1 SV=2
Length = 729
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 113/442 (25%), Positives = 194/442 (43%), Gaps = 62/442 (14%)
Query: 15 SPSLDDCLKLLK-GERDEQRLAGLLVVTKFCK-GD-DAVSLRKIYDAVGPRFLDRLLRTG 71
+P+L+ L L+ + D ++ A LL+VTK K GD DA + R+I+DAVG F +RLL T
Sbjct: 33 NPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIFDAVGFTFPNRLLTT- 91
Query: 72 LGKGINSGNSSENRDAYLQLSVTVLAAFCRVPEIASSEDMVSKVPPILELMLKESG---- 127
K G A L V +LA FC PE+AS +++K+ PIL L G
Sbjct: 92 --KEAPDGCPDHVLRA---LGVALLACFCSDPELASHPQVLNKI-PILCTFLTARGDPDD 145
Query: 128 ---TSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQL 184
S++++ Y+ L V T G L G + L G + L
Sbjct: 146 AARRSMIDDTYQCLTAVAG-TPRGPRHLIAGGTVSALCQAYLGHGYGFDQALALLVGLLA 204
Query: 185 MLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEAL 244
+ D L+ ++ ++ +F +A KFE LL L
Sbjct: 205 AAETQCWKEAEPDLLA----VLRGLSEDFQRAEDASKFELCQLLPLFLPPTT-------- 252
Query: 245 RVMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEEWLIGKIDLPDIQDS 304
V P+ ++ G+ IL ++++ ++ AL LA + G +W
Sbjct: 253 -VPPECHRD--LQAGLARILGSKLSSWQRNPALKLAARLAHACGSDW------------- 296
Query: 305 IPSDRCLLLVLESSRVEIAVLLNELAYLKYEASKNTSSTAESFFSKQRNVAIAFSLVEKI 364
IP + SS + LL LA ++ + + T K+ V ++L+E
Sbjct: 297 IP--------VGSSGSKFLALLVNLACVEVRLALEETGTE----VKEDVVTACYALMELG 344
Query: 365 IRLISNIAESEGGLIDDNTFMKVMNGLNETIGVVLEYLQDAKEHERKKGNDLLASVRLVG 424
I+ + +S L+ + +++++ + E IG V+ YL E++K + ASVR++G
Sbjct: 345 IQECTRCEQS---LLKEPQKVQLVSIMKEAIGAVIHYLLRVGP-EKQKEPFVFASVRILG 400
Query: 425 SYLAETPHACKEKVRELLQHML 446
++LAE + +++V +LL ++
Sbjct: 401 AWLAEETSSLRKEVCQLLPFLV 422
>sp|Q9VI25|NCDN_DROME Neurochondrin homolog OS=Drosophila melanogaster GN=Neurochondrin
PE=2 SV=1
Length = 723
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 104/506 (20%), Positives = 211/506 (41%), Gaps = 66/506 (13%)
Query: 14 PSPSLDDCLKLLKGER-DEQRLAGLLVVTKFCKGDD--AVSLRKIYDAVGPRFLDRLLRT 70
P P + C LLKG + D ++ A L +VTK KG D A + +++A+G FL +LL
Sbjct: 5 PEP-VRKCASLLKGTKSDTEKFAALFMVTKLVKGKDCNAAGKKLLFEAIGFPFLKKLL-- 61
Query: 71 GLGKGINSGNSSENRDAYLQLSVTVLAAFCRVPEIASSEDMVSKVPPILELMLK------ 124
+ K + + Y +++++L FC+ E+A+ +D++ +P +LE++ +
Sbjct: 62 -VSKDLPNDCPPL---VYKSVALSILTCFCQEEELATHKDIIDAIPTLLEIVEQADDEDY 117
Query: 125 ESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQL 184
E ++ E Y L + + G L +G + ++ ++ S + A+ L+ L
Sbjct: 118 EDNLIVVSEAYSCLKSIASHEP-GQQALLATGAIPKMS---QIYSAQSFQTDEALHLIVL 173
Query: 185 MLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEAL 244
++ + + D + ++ +A + K+E +L +L + ++ +L
Sbjct: 174 LVKQFGVVSWPEDP-TAFHALIQRIALDMETDDTERKYELCRILADILITCRREIVINSL 232
Query: 245 RVMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEEWLIGKIDLPDIQDS 304
W + G IL+ ++ P ++ AL L + + + G +W D Q +
Sbjct: 233 E---GQIWPESLFKGCGDILKAKIGPKQRDPALHLIATTLHVLGIQWAFM-----DEQKT 284
Query: 305 IPSDRCLLLVLESSRVEIAVLLNELAYLKYEASKNTSSTAESFFSKQRNVAIAFSLVEKI 364
L +L+ +E+ + ++E E+ F + + FS++E
Sbjct: 285 F-----FLQLLQLGAIEVRMQMDE-------------KKLETTFKQAELLTCCFSILEHC 326
Query: 365 IRLISNIAESEGGLIDDNTFMKVMNGLNETIGVVLEYLQDAKEHERKKGND---LLASVR 421
I ++ T+ + N+ + V+ QD K E D + A V+
Sbjct: 327 IEYMATDQLDLEPKEKQTTYTALKGAFNQVLAVLTRVSQD-KIRESSNPKDKKFVFAIVK 385
Query: 422 LVGSYLAETPHACKEKVRELLQHMLSIEGED--------------EPSPFYSVFFLLPML 467
++ ++LA+ A + + +LL ML + E EP P + +LP L
Sbjct: 386 VLSAWLAQETTAMRPAIYKLLPFMLKVANESFQELKTWRAGTREGEP-PIDVLRIMLPAL 444
Query: 468 CQTTMEIEGCKDLVSSGMYKAVAECL 493
C +E E + L + + + E L
Sbjct: 445 CHFAVEEEARRVLFTHKQDEVLLESL 470
>sp|B0TCS1|GLMM_HELMI Phosphoglucosamine mutase OS=Heliobacterium modesticaldum (strain
ATCC 51547 / Ice1) GN=glmM PE=3 SV=1
Length = 459
Score = 33.5 bits (75), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 118 ILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMEL 177
+LE +L+E + E+ L+L N TGDGV T G+++L T G L EL
Sbjct: 327 VLEALLREGASFGGEQSGHILFLQHNTTGDGVLT-----GLQLLTVLKET---GKPLSEL 378
Query: 178 AIRLLQL 184
A ++ QL
Sbjct: 379 AAQMEQL 385
>sp|Q5B1G6|PRM1_EMENI Plasma membrane fusion protein prm1 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=prm1 PE=3 SV=1
Length = 739
Score = 32.7 bits (73), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 17/120 (14%)
Query: 397 VVLEYLQDAKEHERKKGNDLLASVRLVGSYLAETPHACKEKVREL-----------LQHM 445
+ + L + R++ SV +GS +A PH + EL L+ M
Sbjct: 66 IAIASLNTNMDSARREALSACTSVESMGSAMASMPHYSARGINELTASGVETAVSALKTM 125
Query: 446 LS--IEGEDEPSPFYSVFFLLPMLCQTTMEIEGCKDLVSSGMYKAVAECL---IKLIGPG 500
L+ + G +E F+ LC TM + G D V G+ K ++ L IK IG G
Sbjct: 126 LTLVVSGVEELIVFFIKMMYQTYLCLITMAVRGTVD-VGVGLLKDASDFLNSTIKSIGEG 184
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 218,661,224
Number of Sequences: 539616
Number of extensions: 8694087
Number of successful extensions: 22518
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 22497
Number of HSP's gapped (non-prelim): 18
length of query: 638
length of database: 191,569,459
effective HSP length: 124
effective length of query: 514
effective length of database: 124,657,075
effective search space: 64073736550
effective search space used: 64073736550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)