Query 006622
Match_columns 638
No_of_seqs 94 out of 103
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 12:05:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006622.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006622hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05536 Neurochondrin: Neuroc 100.0 4E-116 9E-121 980.5 46.2 528 13-572 2-542 (543)
2 KOG2611 Neurochondrin/leucine- 100.0 8E-106 2E-110 853.1 35.1 515 8-569 4-547 (698)
3 KOG2611 Neurochondrin/leucine- 99.7 9.8E-15 2.1E-19 158.0 23.5 460 30-558 77-591 (698)
4 PLN03200 cellulose synthase-in 95.6 0.51 1.1E-05 61.5 19.1 154 60-235 610-766 (2102)
5 PF05804 KAP: Kinesin-associat 94.7 13 0.00028 44.6 26.0 415 17-551 251-675 (708)
6 PLN03200 cellulose synthase-in 93.6 2.8 6.1E-05 55.1 18.6 201 15-235 608-813 (2102)
7 PF08167 RIX1: rRNA processing 91.9 0.38 8.3E-06 46.8 6.3 126 8-147 17-147 (165)
8 PF10508 Proteasom_PSMB: Prote 90.4 15 0.00032 42.1 18.1 254 18-294 121-426 (503)
9 cd00020 ARM Armadillo/beta-cat 90.2 2 4.4E-05 37.3 8.8 97 86-185 21-118 (120)
10 PF05804 KAP: Kinesin-associat 89.0 25 0.00055 42.2 19.0 162 88-275 386-549 (708)
11 PF04826 Arm_2: Armadillo-like 88.8 4 8.6E-05 42.8 11.0 182 85-290 29-210 (254)
12 cd00020 ARM Armadillo/beta-cat 87.2 6.5 0.00014 34.0 9.9 109 114-231 8-118 (120)
13 PF05536 Neurochondrin: Neuroc 82.7 15 0.00033 42.6 12.8 193 391-600 46-243 (543)
14 PF03224 V-ATPase_H_N: V-ATPas 80.3 9.7 0.00021 40.5 9.5 158 17-189 106-271 (312)
15 PF14666 RICTOR_M: Rapamycin-i 79.9 14 0.0003 38.3 10.0 135 30-167 2-174 (226)
16 KOG1077 Vesicle coat complex A 72.0 2.4E+02 0.0051 34.3 19.9 263 11-287 69-400 (938)
17 KOG1789 Endocytosis protein RM 61.2 1.1E+02 0.0023 38.8 12.7 178 83-265 1736-1942(2235)
18 PF06025 DUF913: Domain of Unk 55.0 1.1E+02 0.0023 34.2 11.0 169 311-494 28-206 (379)
19 PTZ00429 beta-adaptin; Provisi 53.3 2.6E+02 0.0057 34.1 14.6 135 83-234 152-286 (746)
20 PF04064 DUF384: Domain of unk 53.2 24 0.00051 29.1 4.2 52 466-526 1-53 (58)
21 PF14225 MOR2-PAG1_C: Cell mor 52.0 3.2E+02 0.0068 29.0 18.1 227 20-289 11-258 (262)
22 KOG4413 26S proteasome regulat 51.8 3.8E+02 0.0083 29.9 15.2 95 95-190 195-289 (524)
23 KOG4224 Armadillo repeat prote 47.9 2.2E+02 0.0048 32.1 11.6 125 17-165 252-385 (550)
24 PF12295 Symplekin_C: Sympleki 46.7 97 0.0021 31.0 8.3 68 532-628 91-158 (183)
25 KOG0168 Putative ubiquitin fus 46.6 1E+02 0.0022 37.8 9.5 128 111-242 209-354 (1051)
26 PF10508 Proteasom_PSMB: Prote 46.4 5.1E+02 0.011 29.8 25.8 139 86-235 91-233 (503)
27 PF03224 V-ATPase_H_N: V-ATPas 45.1 1.2E+02 0.0026 32.2 9.3 117 16-142 146-268 (312)
28 PF06209 COBRA1: Cofactor of B 43.5 5.2E+02 0.011 29.9 14.3 105 457-574 262-378 (474)
29 KOG2171 Karyopherin (importin) 42.8 5.1E+02 0.011 32.9 14.8 236 9-288 113-380 (1075)
30 KOG2160 Armadillo/beta-catenin 42.5 3.3E+02 0.0073 30.1 12.1 141 131-286 100-241 (342)
31 PF04499 SAPS: SIT4 phosphatas 42.3 1.7E+02 0.0036 33.7 10.3 120 115-235 64-231 (475)
32 PF04826 Arm_2: Armadillo-like 41.7 2.3E+02 0.005 29.8 10.6 97 88-189 111-207 (254)
33 KOG2122 Beta-catenin-binding p 41.0 1E+03 0.022 31.8 20.2 220 256-526 315-563 (2195)
34 KOG3036 Protein involved in ce 40.4 56 0.0012 34.7 5.6 95 48-153 109-206 (293)
35 PF08045 CDC14: Cell division 40.1 1.7E+02 0.0036 31.1 9.1 101 86-192 105-209 (257)
36 PF10165 Ric8: Guanine nucleot 39.2 2.2E+02 0.0048 32.3 10.6 90 125-215 43-137 (446)
37 PF04821 TIMELESS: Timeless pr 39.1 1.2E+02 0.0027 31.8 8.1 116 408-525 3-152 (266)
38 PF12348 CLASP_N: CLASP N term 39.1 2.4E+02 0.0051 28.0 9.9 197 18-234 5-207 (228)
39 KOG2160 Armadillo/beta-catenin 35.4 6.6E+02 0.014 27.9 14.3 119 58-189 120-242 (342)
40 KOG2973 Uncharacterized conser 34.7 86 0.0019 34.4 6.0 83 439-530 238-323 (353)
41 smart00185 ARM Armadillo/beta- 34.0 81 0.0018 22.2 4.2 38 475-521 3-40 (41)
42 cd00256 VATPase_H VATPase_H, r 33.8 7.3E+02 0.016 28.3 13.5 106 23-142 150-257 (429)
43 KOG0166 Karyopherin (importin) 33.8 8.4E+02 0.018 28.6 17.4 147 15-163 108-286 (514)
44 PF08167 RIX1: rRNA processing 31.8 3.3E+02 0.0071 26.5 9.2 99 89-189 42-145 (165)
45 PF08389 Xpo1: Exportin 1-like 31.4 1.5E+02 0.0032 27.0 6.5 72 378-450 63-136 (148)
46 PF14668 RICTOR_V: Rapamycin-i 30.7 73 0.0016 27.4 3.9 42 114-156 29-70 (73)
47 PF12516 DUF3719: Protein of u 28.9 20 0.00042 30.5 0.1 19 615-633 11-29 (68)
48 KOG4500 Rho/Rac GTPase guanine 28.6 2.8E+02 0.0061 32.0 8.9 135 15-166 264-412 (604)
49 KOG4199 Uncharacterized conser 26.2 5.4E+02 0.012 28.9 10.3 121 54-189 278-405 (461)
50 KOG4199 Uncharacterized conser 25.5 3.4E+02 0.0073 30.4 8.6 76 113-189 283-361 (461)
51 PF07962 Swi3: Replication For 25.5 1.1E+02 0.0024 26.8 4.2 49 581-636 8-59 (83)
52 PF02262 Cbl_N: CBL proto-onco 25.3 3.8E+02 0.0082 25.8 7.9 99 96-221 20-120 (130)
53 PF12460 MMS19_C: RNAPII trans 24.6 9.9E+02 0.022 26.5 14.3 186 87-288 17-222 (415)
54 KOG2274 Predicted importin 9 [ 24.3 1.5E+03 0.033 28.5 17.2 202 61-288 529-741 (1005)
55 COG5209 RCD1 Uncharacterized p 24.0 53 0.0012 34.5 2.2 85 57-152 139-226 (315)
56 KOG1048 Neural adherens juncti 22.7 3.4E+02 0.0073 33.0 8.7 117 57-188 564-685 (717)
57 PF05004 IFRD: Interferon-rela 21.3 1E+03 0.023 25.6 13.1 184 18-212 88-284 (309)
58 KOG4692 Predicted E3 ubiquitin 20.9 6.9E+02 0.015 28.0 9.8 167 376-553 185-368 (489)
59 PF03819 MazG: MazG nucleotide 20.7 1.5E+02 0.0033 24.8 4.0 46 584-632 28-73 (74)
60 PF12530 DUF3730: Protein of u 20.6 2.8E+02 0.0062 28.4 6.8 92 35-142 57-150 (234)
61 PF06371 Drf_GBD: Diaphanous G 20.5 1.6E+02 0.0034 28.3 4.7 55 128-185 130-185 (187)
62 PF12460 MMS19_C: RNAPII trans 20.2 5.4E+02 0.012 28.6 9.4 137 442-594 1-145 (415)
No 1
>PF05536 Neurochondrin: Neurochondrin
Probab=100.00 E-value=3.9e-116 Score=980.46 Aligned_cols=528 Identities=37% Similarity=0.572 Sum_probs=486.2
Q ss_pred CCCccHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHH--HHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHH
Q 006622 13 APSPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVS--LRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQ 90 (638)
Q Consensus 13 ~~~~~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~--~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~ 90 (638)
+++++++||+++||+++||||||||+||||++|++|++. .|+||+||||+||+|||+|+. + |+++|+++|++
T Consensus 2 ~~~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~--~----~~~~~~~~~~~ 75 (543)
T PF05536_consen 2 GQSASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGS--V----PSDCPPEEYLS 75 (543)
T ss_pred CchHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCC--C----CCCCCHHHHHH
Confidence 567899999999999999999999999999999999874 678999999999999999984 3 77889999999
Q ss_pred HHHHHHHHhcCCcccccCcccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccC
Q 006622 91 LSVTVLAAFCRVPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFAD 170 (638)
Q Consensus 91 LavsvLaaF~~~pe~A~~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~ 170 (638)
||||||||||++|++|+||+|++|||.|+++++++++..+++||||||++|+ ++++|++++++.|++++|+.++ ++
T Consensus 76 LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~---~~ 151 (543)
T PF05536_consen 76 LAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEII---PN 151 (543)
T ss_pred HHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHH---Hh
Confidence 9999999999999999999999999999999999999677899999999998 8999999999999999985544 36
Q ss_pred CcchHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhhhHHHHhhcCCCc
Q 006622 171 GSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDS 250 (638)
Q Consensus 171 ~s~~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~~~~~~~~~~l~~~~~~ 250 (638)
++++.|.|+++|++++++.+.+. |.++.+.++.+++++|++|+..|+..||++|++|+.||++. |.+ ..+..++.
T Consensus 152 ~~~~~E~Al~lL~~Lls~~~~~~-~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~---~~~-~~~~~~~~ 226 (543)
T PF05536_consen 152 QSFQMEIALNLLLNLLSRLGQKS-WAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRS---PIL-PLESPPSP 226 (543)
T ss_pred CcchHHHHHHHHHHHHHhcchhh-hhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC---Ccc-ccccCChh
Confidence 89999999999999999986554 55999999999999999999999999999999999999997 322 33566889
Q ss_pred chhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhcCCCcccCCCCCCCCcCCCCccchHHHHhhhhhHHHHHhcchhh
Q 006622 251 KWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEEWLIGKIDLPDIQDSIPSDRCLLLVLESSRVEIAVLLNELA 330 (638)
Q Consensus 251 ~W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~G~~Wl~~~~~~~~~~~~~~~~kFllLll~la~VEVrm~Leela 330 (638)
.|+++||+||++||+||++++||++||+|+++|++++|++|++++.+ ++++||++|++|++||||||+|+++.
T Consensus 227 ~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~-------~~~~~F~~Llv~l~~VEir~~L~~L~ 299 (543)
T PF05536_consen 227 KWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEWLFADDK-------KSGKKFLLLLVNLACVEIRMSLEELL 299 (543)
T ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHhhcCCCC-------CCcccHHHHHHHHHHHHHHHHhHHhh
Confidence 99999999999999999999999999999999999999999999842 36799999999999999999999976
Q ss_pred hhhhhcccCCCchhhhhhhhhhhhhhhHHHHHHHHHHHhhcccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 006622 331 YLKYEASKNTSSTAESFFSKQRNVAIAFSLVEKIIRLISNIAESEGGLIDDNTFMKVMNGLNETIGVVLEYLQDAKEHER 410 (638)
Q Consensus 331 ~~~~e~~~~~~~~~e~i~~~~~~L~~Cf~ilE~~I~~l~~~~e~~~~~L~~~~~~k~~~~L~Ea~~~VL~~L~~~~~~~~ 410 (638)
+. .+.+.+..++++|++||+|+|++|+|+++..|.++..+++++++|++++|+|+|++|++||+++|++++
T Consensus 300 ~~---------~~~~~~~~~~~~L~~cf~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~ 370 (543)
T PF05536_consen 300 EQ---------LNPEEYPEKQRLLASCFSILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQ 370 (543)
T ss_pred hc---------CCchhhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 43 123556678999999999999999999998888888899999999999999999999999999999998
Q ss_pred ccCchhHHHHHHHHHHhhcCchhhHHHHHhhhhhhhhccccCCCC-------CchhHHHHhhhhcccccchhhhhHhhcc
Q 006622 411 KKGNDLLASVRLVGSYLAETPHACKEKVRELLQHMLSIEGEDEPS-------PFYSVFFLLPMLCQTTMEIEGCKDLVSS 483 (638)
Q Consensus 411 ~k~~~vlAsvRvLgawLAEe~salk~~v~~LLPfll~~~~~~~~~-------~~d~lrfLLP~Lc~lT~e~~gr~iL~s~ 483 (638)
+++.+++|+||+||+||||||+++|+++++|||||++|.+++++. ++|++|||||||||+|+|++||++|+++
T Consensus 371 ~d~~~vlAsvR~L~~WLaEe~~~lr~~v~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~~gr~~l~~~ 450 (543)
T PF05536_consen 371 KDPDFVLASVRVLGAWLAEETSALRKEVYGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEEEGRKILLSN 450 (543)
T ss_pred cchHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccHHHHHHHHhC
Confidence 855599999999999999999999999999999999999999888 9999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhcCCCccc----cCchhHHHHHHHHHHHHhcCCCcccCCCcccHHHHHHHHHhhccCCCCcchHHHH
Q 006622 484 GMYKAVAECLIKLIGPGRVTV----EDDGCIFLACDTILNLLLKKEQVRFPMDESTSIHLLKALAYWTEDSNDPTIIMMA 559 (638)
Q Consensus 484 ~~~~~L~~~l~~~~~~~~~~~----~~~~~l~~aC~illNl~v~~~~~~i~~~~~~F~~ll~~l~~~~~~~~~~~~~~la 559 (638)
|||++|++||.++.+..+... ..+.+|+++||||||+++++|+++++ ++++|++++++|++|....++++.+++|
T Consensus 451 ~g~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~c~illNl~~~e~~~~~~-~~~~f~~ll~~l~~~~~~~~~~~~~~~s 529 (543)
T PF05536_consen 451 GGWKLLCDDLLKILQSPSGDDDAEDSAEMALVTACGILLNLVVTEPKMDVE-EEATFIELLKALLQWADPSNDPSALVVS 529 (543)
T ss_pred CcHHHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhcCCCCCcchhhhc
Confidence 999999999999977644331 12359999999999999999998666 8999999999999999999999999999
Q ss_pred HhHHHHhcccCCh
Q 006622 560 SCICALLFDSTSE 572 (638)
Q Consensus 560 a~~~tl~l~~~~e 572 (638)
.++|++.+|+|++
T Consensus 530 ~~~~~~w~d~~~~ 542 (543)
T PF05536_consen 530 PSYCELWFDLTEL 542 (543)
T ss_pred ccHHHHHHHhhhc
Confidence 9999999999875
No 2
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=100.00 E-value=8.1e-106 Score=853.12 Aligned_cols=515 Identities=36% Similarity=0.495 Sum_probs=464.5
Q ss_pred CCCCCCCCccHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHH--HHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcch
Q 006622 8 QPEESAPSPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVS--LRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENR 85 (638)
Q Consensus 8 ~p~~~~~~~~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~--~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~ 85 (638)
.||. .++++.++|+.++++++||||||||+||||++||+|+++ .++|||||||+|+||||+|+. . |+|||+
T Consensus 4 ~pep-~r~~a~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~--~----p~dcpd 76 (698)
T KOG2611|consen 4 APEP-ERSPALDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKS--G----PGDCPD 76 (698)
T ss_pred Cccc-ccccchhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCC--C----CCCCcH
Confidence 4443 467789999999999999999999999999999999996 577999999999999999983 3 899999
Q ss_pred HHHHHHHHHHHHHhcCCcccccCcccccchhHHHHhhhcccccc------hHHHHHHHHHHHHhcccchhhHHhhcCchH
Q 006622 86 DAYLQLSVTVLAAFCRVPEIASSEDMVSKVPPILELMLKESGTS------ILEECYEFLYLVTNATGDGVTTLYESGGMK 159 (638)
Q Consensus 86 ~~~~~LavsvLaaF~~~pe~A~~~~~v~rIP~l~~~l~~~~~~~------~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~ 159 (638)
++|++++++||+|||++||+|+|++|++|||+|+++|+++.|+. +++||||||++|| +++.|+++++..|+++
T Consensus 77 ~Vy~~i~itvLacFC~~pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va-~~e~G~~~Lia~G~~~ 155 (698)
T KOG2611|consen 77 DVYLQISITVLACFCRVPELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVA-TAEAGLMTLIASGGLR 155 (698)
T ss_pred HHHHHHHHHHHHHHhCChhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHh-cCCchhHHHHhcCchH
Confidence 99999999999999999999999999999999999999988744 9999999999998 6899999999999999
Q ss_pred HHHHHHhcccCCcchHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhhh
Q 006622 160 VLAFQMSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSAL 239 (638)
Q Consensus 160 ~l~~~i~~~~~~s~~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~~~~~~ 239 (638)
++ ||||.. .++++++|++|++.+|..+ ..++|++....|+++++++|+||+++||++|||+||+|+++|.++++.-
T Consensus 156 ~~-~Q~y~~--~~~~~d~alal~Vlll~~~-~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~ 231 (698)
T KOG2611|consen 156 VI-AQMYEL--PDGSHDMALALKVLLLLVS-KLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAVLSSEYSEL 231 (698)
T ss_pred HH-HHHHhC--CCCchhHHHHHHHHHHHHH-hcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHh
Confidence 98 799964 4566788888888888776 3578899999999999999999999999999999999999999995444
Q ss_pred HHHHhhcCCCcchhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhcCCCcccCCCCCCCCcCCCCccchHHHHhhhhh
Q 006622 240 LHEALRVMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEEWLIGKIDLPDIQDSIPSDRCLLLVLESSR 319 (638)
Q Consensus 240 ~~~~l~~~~~~~W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~G~~Wl~~~~~~~~~~~~~~~~kFllLll~la~ 319 (638)
++..++ +.+|++++|+|+.+||+||++|+||+|||+|++.|++++|++|+++|. .+.+|+.|+.++++
T Consensus 232 ~~~pl~---~~~w~~~l~~G~~~IL~~kv~p~qr~pAL~Laa~~~hilG~~W~~~ge---------q~t~fL~ll~~la~ 299 (698)
T KOG2611|consen 232 LHEPLR---SMNWADYLRTGVVAILQNKVAPSQRLPALILAANMMHILGEKWLLGGE---------QKTVFLPLLDILAD 299 (698)
T ss_pred ccChhh---hcchHHHHHHHHHHHHhcccCchhcChHHHHHHHHHHHhchhhcccCC---------ccceehhhhcchhh
Confidence 444332 459999999999999999999999999999999999999999999983 36789999999999
Q ss_pred HHHHHhcchhhhhhhhcccCCCchhhhhhhhhhhhhhhHHHHHHHHHHHhhcccccCCCCChHHHHHHHHHHHHHHHHHH
Q 006622 320 VEIAVLLNELAYLKYEASKNTSSTAESFFSKQRNVAIAFSLVEKIIRLISNIAESEGGLIDDNTFMKVMNGLNETIGVVL 399 (638)
Q Consensus 320 VEVrm~Leela~~~~e~~~~~~~~~e~i~~~~~~L~~Cf~ilE~~I~~l~~~~e~~~~~L~~~~~~k~~~~L~Ea~~~VL 399 (638)
+||||.|||... | .|.+++++||+++|..|.+..+ ++.+|.++++++.++.|+++|+.|+
T Consensus 300 ~evrl~lee~~~---E-------------iKa~vlt~c~a~~e~~i~~~~~----~q~dl~~kqk~t~~t~lk~af~~V~ 359 (698)
T KOG2611|consen 300 REVRLVLEESHV---E-------------IKASVLTNCLAYKEYEIPKDNS----TQEDLLLKQKQTTYTYLKIAFSLVE 359 (698)
T ss_pred HHHHHhhhhccc---c-------------HHHHHHHHHHHHHHhccccccc----cHhhccchhhhhHHHHHHHHHHHHH
Confidence 999999998642 1 2788999999999999988875 4567999999999999999999999
Q ss_pred HHHHHhhhhccccCchhHHHHHHHHHHhhcCchhhHHHHHhhhhhhhhccccCC-------------CCCchhHHHHhhh
Q 006622 400 EYLQDAKEHERKKGNDLLASVRLVGSYLAETPHACKEKVRELLQHMLSIEGEDE-------------PSPFYSVFFLLPM 466 (638)
Q Consensus 400 ~~L~~~~~~~~~k~~~vlAsvRvLgawLAEe~salk~~v~~LLPfll~~~~~~~-------------~~~~d~lrfLLP~ 466 (638)
.||.++...+++ +||++|+||+|||||||+|+++|+.|++|||||+.+++++. ..|+|++|.+||+
T Consensus 360 ~il~~Vss~k~~-EPFvfasv~~l~AWla~et~~lr~~V~~llpfl~~~a~~~~~e~~~~~a~~r~i~PP~D~lr~~lP~ 438 (698)
T KOG2611|consen 360 KILKYVSSAKEN-EPFVFASVEALSAWLAKETKILRETVGALLPFLRDAAEHGIKEGTDLLASVRVIGPPIDSLRAELPV 438 (698)
T ss_pred HHHHHhhhcccc-CCceeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhHHHHhhhH
Confidence 999999988888 69999999999999999999999999999999999988643 2689999999999
Q ss_pred hcccccchhhhhHhhccCChHHHHHHHHHH---hcCCC-ccccCc---hhHHHHHHHHHHHHhcCCCcccCCCcccHHHH
Q 006622 467 LCQTTMEIEGCKDLVSSGMYKAVAECLIKL---IGPGR-VTVEDD---GCIFLACDTILNLLLKKEQVRFPMDESTSIHL 539 (638)
Q Consensus 467 Lc~lT~e~~gr~iL~s~~~~~~L~~~l~~~---~~~~~-~~~~~~---~~l~~aC~illNl~v~~~~~~i~~~~~~F~~l 539 (638)
+||.++||.+|++|+.+|.++..+.|++.| ..+++ .|.+.| +..+++|+|+||+.|++|+. +. ++++|+.|
T Consensus 439 ~Ch~~Ved~~r~~L~~~g~esl~~~f~~~~w~lpa~~~~~~~~PD~V~~~~Q~lC~I~mN~~v~~p~~-~~-rd~~f~~l 516 (698)
T KOG2611|consen 439 ACHEQVEDLLRYMLSVKGLESLSSPFLSTCWLLPAERLKRMNEPDPVPTPEQMLCQITMNAEVCKPLA-YS-RDVAFVEL 516 (698)
T ss_pred HHHHHHHHHHHHHHHhcCCccccchHHHHHHccCcchhccccCCCCCCcHHHHHHHHHhhhhhccccc-cc-cccHHHHH
Confidence 999999999999999999999999999999 33332 233333 78999999999999999996 55 89999999
Q ss_pred HHHHHhhccC-CCCcchHHHHHhHHHHhccc
Q 006622 540 LKALAYWTED-SNDPTIIMMASCICALLFDS 569 (638)
Q Consensus 540 l~~l~~~~~~-~~~~~~~~laa~~~tl~l~~ 569 (638)
|+++++.+|. +|++.+++++||.++||+-+
T Consensus 517 l~~lie~lpelvdt~drli~~an~ailglLl 547 (698)
T KOG2611|consen 517 LIKLIERLPELVDTEDRLIFLANDAILGLLL 547 (698)
T ss_pred HHHHHHhchHhhCCCcceeeehhHHHHHHHH
Confidence 9999999999 99999999999999999875
No 3
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=99.66 E-value=9.8e-15 Score=157.96 Aligned_cols=460 Identities=32% Similarity=0.395 Sum_probs=291.9
Q ss_pred chhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhcCCcccccCc
Q 006622 30 DEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAAFCRVPEIASSE 109 (638)
Q Consensus 30 D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLaaF~~~pe~A~~~ 109 (638)
|-=|=+|+.+++-+|+-....+-..+-++|+. |-..+..+ . +++.++...|.+=+...|.+.++-|.=-.+=
T Consensus 77 ~Vy~~i~itvLacFC~~pElAsh~~~v~~IP~--llev~~~~--~----d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~L 148 (698)
T KOG2611|consen 77 DVYLQISITVLACFCRVPELASHEEMVSRIPL--LLEVMSKG--I----DTDYEDNLIMLEDCYECLYLVATAEAGLMTL 148 (698)
T ss_pred HHHHHHHHHHHHHHhCChhhccCHHHHHhhhH--HHHHHHhc--C----CCchhhhHHHHHHHHHHHHHHhcCCchhHHH
Confidence 33455666666666665444455555555543 11111121 1 2566677788888888888877643322111
Q ss_pred ccccchhHHHHhhhcccccchHHHHHHHHHHHHhc---ccchhhHHhhcCchHHHHHHHhcccCCcchHHHHHHHHHHHH
Q 006622 110 DMVSKVPPILELMLKESGTSILEECYEFLYLVTNA---TGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLML 186 (638)
Q Consensus 110 ~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s---~~~G~~~l~~~g~v~~l~~~i~~~~~~s~~~e~Al~LL~~LL 186 (638)
=-.+.||.+..+-+-.+...--..++-+|...+.. -++-...|.+- |.+++.++.. ...-.--++.+||.-.|
T Consensus 149 ia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~~~~~~cw~e~~~~flal--i~~va~df~~--~~~a~KfElc~lL~~vl 224 (698)
T KOG2611|consen 149 IASGGLRVIAQMYELPDGSHDMALALKVLLLLVSKLDCWSETIERFLAL--IAAVARDFAV--LHNALKFELCHLLSAVL 224 (698)
T ss_pred HhcCchHHHHHHHhCCCCchhHHHHHHHHHHHHHhcccCcCCHHHHHHH--HHHHHHHHHH--hhhHHHHHHHHHHHHHH
Confidence 22356777775543333222123344444333212 23333344332 4444333322 12222345667776555
Q ss_pred hccccccc--------cccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhhhHHHHhhcCCCcchhHHHHH
Q 006622 187 SKLSLEII--------TNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWSMYMRV 258 (638)
Q Consensus 187 ~~~~~~~~--------~~~~~~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~~~~~~~~~~l~~~~~~~W~~~ir~ 258 (638)
.....+.. |.++ +...++ .+|..=+.+..+-| .-.+-.
T Consensus 225 ~~~~~e~~~~pl~~~~w~~~------l~~G~~---------------~IL~~kv~p~qr~p-------------AL~Laa 270 (698)
T KOG2611|consen 225 SSEYSELLHEPLRSMNWADY------LRTGVV---------------AILQNKVAPSQRLP-------------ALILAA 270 (698)
T ss_pred hCChHHhccChhhhcchHHH------HHHHHH---------------HHHhcccCchhcCh-------------HHHHHH
Confidence 54422222 2111 111111 22222222221111 112335
Q ss_pred HHHHHHhcCCChhhhhhHHHHHHHHHhhcCCCcccCCCCCCCCcCCCCccchHHHHhhhhhHHH--HHhcchhhhhhhhc
Q 006622 259 GVVAILQNRVAPAEKLQALILAESIVSIKGEEWLIGKIDLPDIQDSIPSDRCLLLVLESSRVEI--AVLLNELAYLKYEA 336 (638)
Q Consensus 259 GL~~IL~skv~~~qR~~aL~Laa~ll~l~G~~Wl~~~~~~~~~~~~~~~~kFllLll~la~VEV--rm~Leela~~~~e~ 336 (638)
.+.+|++++|-+.- --|.-.+ |...+ .++..+.|+++...+|| .++.+..++++++-
T Consensus 271 ~~~hilG~~W~~~g-------------eq~t~fL------~ll~~--la~~evrl~lee~~~EiKa~vlt~c~a~~e~~i 329 (698)
T KOG2611|consen 271 NMMHILGEKWLLGG-------------EQKTVFL------PLLDI--LADREVRLVLEESHVEIKASVLTNCLAYKEYEI 329 (698)
T ss_pred HHHHHhchhhcccC-------------Cccceeh------hhhcc--hhhHHHHHhhhhccccHHHHHHHHHHHHHHhcc
Confidence 55666666664311 1111111 11111 35788999999999999 88999999999998
Q ss_pred ccCCCchhhhhhhhhh-----hhhhhHHHHHHHHHHHhhcccccCC-CCChH-H---HHHHHHHHHHHHHHHHHHHHHhh
Q 006622 337 SKNTSSTAESFFSKQR-----NVAIAFSLVEKIIRLISNIAESEGG-LIDDN-T---FMKVMNGLNETIGVVLEYLQDAK 406 (638)
Q Consensus 337 ~~~~~~~~e~i~~~~~-----~L~~Cf~ilE~~I~~l~~~~e~~~~-~L~~~-~---~~k~~~~L~Ea~~~VL~~L~~~~ 406 (638)
++.++ +.+++..||+ .+...|+.+|.++.|++...+.+.- -.+-+ . +.|..++|.++++.++.||.+++
T Consensus 330 ~~~~~-~q~dl~~kqk~t~~t~lk~af~~V~~il~~Vss~k~~EPFvfasv~~l~AWla~et~~lr~~V~~llpfl~~~a 408 (698)
T KOG2611|consen 330 PKDNS-TQEDLLLKQKQTTYTYLKIAFSLVEKILKYVSSAKENEPFVFASVEALSAWLAKETKILRETVGALLPFLRDAA 408 (698)
T ss_pred ccccc-cHhhccchhhhhHHHHHHHHHHHHHHHHHHhhhccccCCceeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88774 5577777776 8889999999999999876444410 12222 2 57899999999999999999999
Q ss_pred hhccccCchhHHHHHHHH----HHhhcCchhhHHHHHhhhhhhhhccc-cCCCCCchhHHHHhh----------------
Q 006622 407 EHERKKGNDLLASVRLVG----SYLAETPHACKEKVRELLQHMLSIEG-EDEPSPFYSVFFLLP---------------- 465 (638)
Q Consensus 407 ~~~~~k~~~vlAsvRvLg----awLAEe~salk~~v~~LLPfll~~~~-~~~~~~~d~lrfLLP---------------- 465 (638)
+|+++++.+..|++|.+| ++.+|-|.+|..+|.+++.|++...+ ++...||..-+|+||
T Consensus 409 ~~~~~e~~~~~a~~r~i~PP~D~lr~~lP~~Ch~~Ved~~r~~L~~~g~esl~~~f~~~~w~lpa~~~~~~~~PD~V~~~ 488 (698)
T KOG2611|consen 409 EHGIKEGTDLLASVRVIGPPIDSLRAELPVACHEQVEDLLRYMLSVKGLESLSSPFLSTCWLLPAERLKRMNEPDPVPTP 488 (698)
T ss_pred HHHHHHHHHHHhhccccCCchhHHHHhhhHHHHHHHHHHHHHHHHhcCCccccchHHHHHHccCcchhccccCCCCCCcH
Confidence 999999999999999999 99999999999999999999999999 788899999999999
Q ss_pred --hhcccccchhhhhHhhccCChHHHHHHHHHHhcCCCcccc-CchhHHHHHHHHHHHHhcCCCcccCCCcc------cH
Q 006622 466 --MLCQTTMEIEGCKDLVSSGMYKAVAECLIKLIGPGRVTVE-DDGCIFLACDTILNLLLKKEQVRFPMDES------TS 536 (638)
Q Consensus 466 --~Lc~lT~e~~gr~iL~s~~~~~~L~~~l~~~~~~~~~~~~-~~~~l~~aC~illNl~v~~~~~~i~~~~~------~F 536 (638)
++|||+|+-.+|+-..-..+ ...++++.+..+.....++ .+..++.+|+.+||++++.-...-+..-- -|
T Consensus 489 ~Q~lC~I~mN~~v~~p~~~~rd-~~f~~ll~~lie~lpelvdt~drli~~an~ailglLl~~l~S~~~v~Q~~~s~~~y~ 567 (698)
T KOG2611|consen 489 EQMLCQITMNAEVCKPLAYSRD-VAFVELLIKLIERLPELVDTEDRLIFLANDAILGLLLKVLSSLRKVKQNDFSICRYI 567 (698)
T ss_pred HHHHHHHHhhhhhccccccccc-cHHHHHHHHHHHhchHhhCCCcceeeehhHHHHHHHHHHHhhcchhhcCChhHHHHH
Confidence 99999999999999987775 6678999999999877655 67899999999999998754431111212 23
Q ss_pred HHHHHHHHhhc--cCCCCcchHHH
Q 006622 537 IHLLKALAYWT--EDSNDPTIIMM 558 (638)
Q Consensus 537 ~~ll~~l~~~~--~~~~~~~~~~l 558 (638)
.....||...- ...++|..+++
T Consensus 568 qAtI~FL~da~~~~esnD~taLvv 591 (698)
T KOG2611|consen 568 QATIRFLWDAYNIDESNDPTALVV 591 (698)
T ss_pred HHHHHHHHHhhcccccCCCceEEe
Confidence 44566665433 33666655443
No 4
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=95.57 E-value=0.51 Score=61.48 Aligned_cols=154 Identities=15% Similarity=0.140 Sum_probs=101.3
Q ss_pred CchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhcC-CcccccCcccccchhHHHHhhhcccccchHHHHHHHH
Q 006622 60 GPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAAFCR-VPEIASSEDMVSKVPPILELMLKESGTSILEECYEFL 138 (638)
Q Consensus 60 G~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLaaF~~-~pe~A~~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L 138 (638)
|.+.|-.||+++ ...-+.-|..+|+.+|+ .++.-..--+.+-||.+++.++.++.+. ..++..+|
T Consensus 610 gL~~Lv~LL~sg-------------s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v-~keAA~AL 675 (2102)
T PLN03200 610 ALRTLIQLLSSS-------------KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAV-ATQSARAL 675 (2102)
T ss_pred cHHHHHHHHcCC-------------CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHH-HHHHHHHH
Confidence 557777788775 23445567788888885 6665433445577999999998766655 58899998
Q ss_pred HHHHhcccchh-hHHhhcCchHHHHHHHhcccCCcchHHHHHHHHHHHHhccccc-cccccchhhHHHHHHHHHHHHhhh
Q 006622 139 YLVTNATGDGV-TTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLE-IITNDYLSELSTIVTVVAREFAVL 216 (638)
Q Consensus 139 ~~ia~s~~~G~-~~l~~~g~v~~l~~~i~~~~~~s~~~e~Al~LL~~LL~~~~~~-~~~~~~~~~l~~lv~~lA~~F~~~ 216 (638)
..++.+..+++ ..+++.|+++.|+.-+. .+...-.+.|+..|..++...... ....+ ..++.+.+-....
T Consensus 676 ~nL~~~~~~~q~~~~v~~GaV~pL~~LL~--~~d~~v~e~Al~ALanLl~~~e~~~ei~~~------~~I~~Lv~lLr~G 747 (2102)
T PLN03200 676 AALSRSIKENRKVSYAAEDAIKPLIKLAK--SSSIEVAEQAVCALANLLSDPEVAAEALAE------DIILPLTRVLREG 747 (2102)
T ss_pred HHHHhCCCHHHHHHHHHcCCHHHHHHHHh--CCChHHHHHHHHHHHHHHcCchHHHHHHhc------CcHHHHHHHHHhC
Confidence 88864455554 45789999999854443 345566799999999999876311 11111 1244455555555
Q ss_pred hhhhhHHHHHHHHHhhhhh
Q 006622 217 HNALKFESLHLLTAVLSSN 235 (638)
Q Consensus 217 ~~~~Kfe~l~~L~~lL~~~ 235 (638)
.+..|=.++..|..+....
T Consensus 748 ~~~~k~~Aa~AL~~L~~~~ 766 (2102)
T PLN03200 748 TLEGKRNAARALAQLLKHF 766 (2102)
T ss_pred ChHHHHHHHHHHHHHHhCC
Confidence 5666667776666666554
No 5
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=94.72 E-value=13 Score=44.59 Aligned_cols=415 Identities=15% Similarity=0.208 Sum_probs=229.6
Q ss_pred cHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHH
Q 006622 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVL 96 (638)
Q Consensus 17 ~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvL 96 (638)
..+|...+++..+.--| |++.|+-++-. |......+.+.=+.+.|-++|..+ ....+-++++.|
T Consensus 251 ~~kk~~~l~~kQeqLlr-v~~~lLlNLAe--d~~ve~kM~~~~iV~~Lv~~Ldr~-------------n~ellil~v~fL 314 (708)
T PF05804_consen 251 ELKKLQTLIRKQEQLLR-VAFYLLLNLAE--DPRVELKMVNKGIVSLLVKCLDRE-------------NEELLILAVTFL 314 (708)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhc--ChHHHHHHHhcCCHHHHHHHHcCC-------------CHHHHHHHHHHH
Confidence 34555566655444444 77777777765 667777777888889999999764 235778899999
Q ss_pred HHhcCCcccc---cCcccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCCcc
Q 006622 97 AAFCRVPEIA---SSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSR 173 (638)
Q Consensus 97 aaF~~~pe~A---~~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~s~ 173 (638)
--++..+|-- ...+++ |.|...+.. .....+..++..|+.++ ..++.+..+++.|.++++..-+. + ..
T Consensus 315 kkLSi~~ENK~~m~~~giV---~kL~kLl~s-~~~~l~~~aLrlL~NLS-fd~~~R~~mV~~GlIPkLv~LL~---d-~~ 385 (708)
T PF05804_consen 315 KKLSIFKENKDEMAESGIV---EKLLKLLPS-ENEDLVNVALRLLFNLS-FDPELRSQMVSLGLIPKLVELLK---D-PN 385 (708)
T ss_pred HHHcCCHHHHHHHHHcCCH---HHHHHHhcC-CCHHHHHHHHHHHHHhC-cCHHHHHHHHHCCCcHHHHHHhC---C-Cc
Confidence 9998766643 234444 445555543 34556799999999997 68999999999999999855443 2 23
Q ss_pred hHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHH-HhhhhhhhhHHHHHHHHHhhhhhhhhhHHHHhhcCCCcch
Q 006622 174 LMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVARE-FAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKW 252 (638)
Q Consensus 174 ~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~-F~~~~~~~Kfe~l~~L~~lL~~~~~~~~~~~l~~~~~~~W 252 (638)
....++.+|..+=..-..... -.+..- ++.+... +.......+.|+.+++.-+=... ...+. -+.+
T Consensus 386 ~~~val~iLy~LS~dd~~r~~-f~~Tdc----Ip~L~~~Ll~~~~~~v~~eliaL~iNLa~~~--rnaql---m~~g--- 452 (708)
T PF05804_consen 386 FREVALKILYNLSMDDEARSM-FAYTDC----IPQLMQMLLENSEEEVQLELIALLINLALNK--RNAQL---MCEG--- 452 (708)
T ss_pred hHHHHHHHHHHhccCHhhHHH-Hhhcch----HHHHHHHHHhCCCccccHHHHHHHHHHhcCH--HHHHH---HHhc---
Confidence 345677776544322100111 122222 3333332 22333444555544443332222 11111 1111
Q ss_pred hHHHHHHHHHHHhcCCChhhhhhHH-HHHHHHHhhcCCCcccCCCCCCCCcCCCCccchHHHHhhhhhHHHHHhcchhhh
Q 006622 253 SMYMRVGVVAILQNRVAPAEKLQAL-ILAESIVSIKGEEWLIGKIDLPDIQDSIPSDRCLLLVLESSRVEIAVLLNELAY 331 (638)
Q Consensus 253 ~~~ir~GL~~IL~skv~~~qR~~aL-~Laa~ll~l~G~~Wl~~~~~~~~~~~~~~~~kFllLll~la~VEVrm~Leela~ 331 (638)
.||..++.. . -+-|++.| ++...+-++-|. ....|.=.+..++++ + -+.
T Consensus 453 -----~gL~~L~~r-a-~~~~D~lLlKlIRNiS~h~~~----------------~k~~f~~~i~~L~~~-v---~~~--- 502 (708)
T PF05804_consen 453 -----NGLQSLMKR-A-LKTRDPLLLKLIRNISQHDGP----------------LKELFVDFIGDLAKI-V---SSG--- 502 (708)
T ss_pred -----CcHHHHHHH-H-HhcccHHHHHHHHHHHhcCch----------------HHHHHHHHHHHHHHH-h---hcC---
Confidence 445444422 2 22445554 677777665331 022444455554442 1 000
Q ss_pred hhhhcccCCCchhhhhhhhhhhhhhhHHHHHHHHHHHhhcccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 006622 332 LKYEASKNTSSTAESFFSKQRNVAIAFSLVEKIIRLISNIAESEGGLIDDNTFMKVMNGLNETIGVVLEYLQDAKEHERK 411 (638)
Q Consensus 332 ~~~e~~~~~~~~~e~i~~~~~~L~~Cf~ilE~~I~~l~~~~e~~~~~L~~~~~~k~~~~L~Ea~~~VL~~L~~~~~~~~~ 411 (638)
+ ....+..|.+++ ++- .-..++...+.+= -..+.||.+.=..|..
T Consensus 503 ----~-------------~ee~~vE~LGiL-------aNL---~~~~ld~~~ll~~--------~~llp~L~~~L~~g~~ 547 (708)
T PF05804_consen 503 ----D-------------SEEFVVECLGIL-------ANL---TIPDLDWAQLLQE--------YNLLPWLKDLLKPGAS 547 (708)
T ss_pred ----C-------------cHHHHHHHHHHH-------Hhc---ccCCcCHHHHHHh--------CCHHHHHHHHhCCCCC
Confidence 0 122333333332 221 1011333333321 2356677775445555
Q ss_pred cCchhHHHHHHHHHHhhcCchhhHHHHH--hhhhhhhhccccCCCCCchhHHHHhhhhcccccchhhhhHhhccCChHHH
Q 006622 412 KGNDLLASVRLVGSYLAETPHACKEKVR--ELLQHMLSIEGEDEPSPFYSVFFLLPMLCQTTMEIEGCKDLVSSGMYKAV 489 (638)
Q Consensus 412 k~~~vlAsvRvLgawLAEe~salk~~v~--~LLPfll~~~~~~~~~~~d~lrfLLP~Lc~lT~e~~gr~iL~s~~~~~~L 489 (638)
.++.++-+|.++|. +|-++.+ ...+. ++.+.++.+-+.-.. .-+.+.=++=.+.|+...+..|+.+++..+ +
T Consensus 548 ~dDl~LE~Vi~~gt-la~d~~~-A~lL~~sgli~~Li~LL~~kqe-DdE~VlQil~~f~~ll~h~~tr~~ll~~~~---~ 621 (708)
T PF05804_consen 548 EDDLLLEVVILLGT-LASDPEC-APLLAKSGLIPTLIELLNAKQE-DDEIVLQILYVFYQLLFHEETREVLLKETE---I 621 (708)
T ss_pred ChHHHHHHHHHHHH-HHCCHHH-HHHHHhCChHHHHHHHHHhhCc-hHHHHHHHHHHHHHHHcChHHHHHHHhccc---h
Confidence 56778899988884 4444443 34343 777888888654221 123333344456666667889999986533 4
Q ss_pred HHHHHHHhcCCCccccCchhHHHHHHHHHHHHhcCCCcccCCCcccHHHHHHHH---HhhccCCC
Q 006622 490 AECLIKLIGPGRVTVEDDGCIFLACDTILNLLLKKEQVRFPMDESTSIHLLKAL---AYWTEDSN 551 (638)
Q Consensus 490 ~~~l~~~~~~~~~~~~~~~~l~~aC~illNl~v~~~~~~i~~~~~~F~~ll~~l---~~~~~~~~ 551 (638)
..||+....+ ....+.-.|+..|+++..-++ +=..=+...||- .+|+.-++
T Consensus 622 ~~ylidL~~d------~N~~ir~~~d~~Ldii~e~d~-----~w~~ri~~~kF~~hN~~WLe~v~ 675 (708)
T PF05804_consen 622 PAYLIDLMHD------KNAEIRKVCDNALDIIAEYDE-----EWAERIRREKFRWHNAQWLEMVE 675 (708)
T ss_pred HHHHHHHhcC------CCHHHHHHHHHHHHHHHHhCH-----HHHHHhhHHHHHHHHHHHHHHHh
Confidence 5666666544 457889999999999987554 111223444444 45776643
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=93.56 E-value=2.8 Score=55.08 Aligned_cols=201 Identities=12% Similarity=0.073 Sum_probs=135.5
Q ss_pred CccHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHH
Q 006622 15 SPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVT 94 (638)
Q Consensus 15 ~~~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lavs 94 (638)
...++...+||++.+++.|=-+.-.+.+++. ++.+-...+-++=|..-+-.||+++. .+.-.+-|.+
T Consensus 608 ~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a-~~~d~~~avv~agaIpPLV~LLss~~------------~~v~keAA~A 674 (2102)
T PLN03200 608 NDALRTLIQLLSSSKEETQEKAASVLADIFS-SRQDLCESLATDEIINPCIKLLTNNT------------EAVATQSARA 674 (2102)
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHcCCHHHHHHHHhcCC------------hHHHHHHHHH
Confidence 4578899999999876666666677778887 45555666777778888888998861 2345566666
Q ss_pred HHHHhcC-CcccccCccccc--chhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCC
Q 006622 95 VLAAFCR-VPEIASSEDMVS--KVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADG 171 (638)
Q Consensus 95 vLaaF~~-~pe~A~~~~~v~--rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~ 171 (638)
+...|.. .++- ...++. -||.|++.+.. .+..+++.|...|..++ ..++|+.++...|+++.+...+.+ ..
T Consensus 675 L~nL~~~~~~~q--~~~~v~~GaV~pL~~LL~~-~d~~v~e~Al~ALanLl-~~~e~~~ei~~~~~I~~Lv~lLr~--G~ 748 (2102)
T PLN03200 675 LAALSRSIKENR--KVSYAAEDAIKPLIKLAKS-SSIEVAEQAVCALANLL-SDPEVAAEALAEDIILPLTRVLRE--GT 748 (2102)
T ss_pred HHHHHhCCCHHH--HHHHHHcCCHHHHHHHHhC-CChHHHHHHHHHHHHHH-cCchHHHHHHhcCcHHHHHHHHHh--CC
Confidence 6666642 2211 122333 48999999965 45566799999999998 699999999999999998666653 44
Q ss_pred cchHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHh-hh-hhhhhHHHHHHHHHhhhhh
Q 006622 172 SRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFA-VL-HNALKFESLHLLTAVLSSN 235 (638)
Q Consensus 172 s~~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~-~~-~~~~Kfe~l~~L~~lL~~~ 235 (638)
....+.|...|..|..++..+.+...+...... +..+..-.. .+ ....-+|++..|..+....
T Consensus 749 ~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~-v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~ 813 (2102)
T PLN03200 749 LEGKRNAARALAQLLKHFPVDDVLKDSVQCRGT-VLALVDLLNSTDLDSSATSEALEALALLARTK 813 (2102)
T ss_pred hHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCc-HHHHHHHHhcCCcchhhHHHHHHHHHHHHhhc
Confidence 556889999999999888655543233222222 222322111 11 2233357888888888765
No 7
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=91.88 E-value=0.38 Score=46.84 Aligned_cols=126 Identities=18% Similarity=0.194 Sum_probs=82.4
Q ss_pred CCCCCCCCccHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHH
Q 006622 8 QPEESAPSPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDA 87 (638)
Q Consensus 8 ~p~~~~~~~~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~ 87 (638)
+|.......-..+..++|++++..+|++|+-|++.+++.++.+ +|..=|-.|+..|+.-=. . .++..
T Consensus 17 ~~~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e----~l~~~~~~W~~~Ll~~L~--~-------~~~~~ 83 (165)
T PF08167_consen 17 APSKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWE----ILLSHGSQWLRALLSILE--K-------PDPPS 83 (165)
T ss_pred ccCHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHc--C-------CCCHH
Confidence 3444445566889999999999999999999999999976644 343445677777776531 1 22344
Q ss_pred HHHHHHHHHHHhc----CCcccccCcccccchhHHHHhhhcccc-cchHHHHHHHHHHHHhcccc
Q 006622 88 YLQLSVTVLAAFC----RVPEIASSEDMVSKVPPILELMLKESG-TSILEECYEFLYLVTNATGD 147 (638)
Q Consensus 88 ~~~LavsvLaaF~----~~pe~A~~~~~v~rIP~l~~~l~~~~~-~~~~~d~~~~L~~ia~s~~~ 147 (638)
.+..++..|+-.. ..|++.+ +-.+.++|.++..+.+-.+ ......|+++|..+-..+|-
T Consensus 84 ~~~~ai~~L~~l~~~~~~~p~l~R-ei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 84 VLEAAIITLTRLFDLIRGKPTLTR-EIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPHHPT 147 (165)
T ss_pred HHHHHHHHHHHHHHHhcCCCchHH-HHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCCc
Confidence 5556666666555 3888863 3357777777777644222 34457778887655323443
No 8
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=90.44 E-value=15 Score=42.13 Aligned_cols=254 Identities=15% Similarity=0.181 Sum_probs=134.6
Q ss_pred HHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHH
Q 006622 18 LDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLA 97 (638)
Q Consensus 18 l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLa 97 (638)
+.-.+..|+..+.+=.-.+.-+++++.+.. .....+|+.-+..-|.+|+.+. ++..+ ++ .+.++.
T Consensus 121 ~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~~~l~~~~~~~~L~~l~~~~---------~~~vR--~R--v~el~v 185 (503)
T PF10508_consen 121 LPLIIQCLRDPDLSVAKAAIKALKKLASHP--EGLEQLFDSNLLSKLKSLMSQS---------SDIVR--CR--VYELLV 185 (503)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHhCCc--hhHHHHhCcchHHHHHHHHhcc---------CHHHH--HH--HHHHHH
Confidence 444445555555444555555556665532 2334566655555666666552 11111 22 222333
Q ss_pred Hhc-CCcccccCcccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCCc----
Q 006622 98 AFC-RVPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGS---- 172 (638)
Q Consensus 98 aF~-~~pe~A~~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~s---- 172 (638)
..+ ..|+.+.--.--+-++.+++.+.. +|.-+--.|+++|+.+| .++.|.+.+.+.|+++++...+.......
T Consensus 186 ~i~~~S~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La-~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~ 263 (503)
T PF10508_consen 186 EIASHSPEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELA-ETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSS 263 (503)
T ss_pred HHHhcCHHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHH-cChhHHHHHHhCCHHHHHHHHHhccccCCcccc
Confidence 333 467766311112356778887766 66555578999999998 59999999999999999855443211111
Q ss_pred chHHHH-------------------HHHHHHHHhc---cc--------------------cccccccchhhHHHHHHHHH
Q 006622 173 RLMELA-------------------IRLLQLMLSK---LS--------------------LEIITNDYLSELSTIVTVVA 210 (638)
Q Consensus 173 ~~~e~A-------------------l~LL~~LL~~---~~--------------------~~~~~~~~~~~l~~lv~~lA 210 (638)
.-.--. -.++..+... .+ ...+...+...+..++.++.
T Consensus 264 ~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~ 343 (503)
T PF10508_consen 264 LLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIG 343 (503)
T ss_pred hhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHH
Confidence 000000 0111111111 00 00011223334445556666
Q ss_pred HHHhhhhhhhhHHHHHHHHHhhhhhhhhhHHHHhhcCCCcchhHHHHH-----HHHHHHhcCCChhhhhhHHHHHHHHHh
Q 006622 211 REFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWSMYMRV-----GVVAILQNRVAPAEKLQALILAESIVS 285 (638)
Q Consensus 211 ~~F~~~~~~~Kfe~l~~L~~lL~~~~~~~~~~~l~~~~~~~W~~~ir~-----GL~~IL~skv~~~qR~~aL~Laa~ll~ 285 (638)
........+.|..+++-|+.+|....+.+.+... .....|-..+.. =+..++ ++--|+-|-.++.+...+..
T Consensus 344 ~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~--~~~~~w~~~~~~~~~~~~l~~~~-~qPF~elr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 344 DAIKSGSTELKLRALHALASILTSGTDRQDNDIL--SITESWYESLSGSPLSNLLMSLL-KQPFPELRCAAYRLLQALAA 420 (503)
T ss_pred HHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhcCCchHHHHHHHh-cCCchHHHHHHHHHHHHHhc
Confidence 6555666788999999999998765221111111 112344333222 222233 33448999999999888877
Q ss_pred hcCCCcccC
Q 006622 286 IKGEEWLIG 294 (638)
Q Consensus 286 l~G~~Wl~~ 294 (638)
.- |-..
T Consensus 421 ~~---Wg~~ 426 (503)
T PF10508_consen 421 QP---WGQR 426 (503)
T ss_pred CH---HHHH
Confidence 64 7753
No 9
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=90.23 E-value=2 Score=37.26 Aligned_cols=97 Identities=12% Similarity=0.160 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHhcCC-cccccCcccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHH
Q 006622 86 DAYLQLSVTVLAAFCRV-PEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQ 164 (638)
Q Consensus 86 ~~~~~LavsvLaaF~~~-pe~A~~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~ 164 (638)
...+.-|+..|..+|.. |+....---.+-||.+++.+... +..+...|+.+|..++...+...+.+.+.|.++.+...
T Consensus 21 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~ 99 (120)
T cd00020 21 ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNL 99 (120)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHH
Confidence 45778888889999975 65553111126789999998764 55667999999999975444667777889999998665
Q ss_pred HhcccCCcchHHHHHHHHHHH
Q 006622 165 MSTFADGSRLMELAIRLLQLM 185 (638)
Q Consensus 165 i~~~~~~s~~~e~Al~LL~~L 185 (638)
+.. ....-.+.|+.+|..+
T Consensus 100 l~~--~~~~~~~~a~~~l~~l 118 (120)
T cd00020 100 LDS--SNEDIQKNATGALSNL 118 (120)
T ss_pred Hhc--CCHHHHHHHHHHHHHh
Confidence 542 3334456677666655
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=89.00 E-value=25 Score=42.15 Aligned_cols=162 Identities=14% Similarity=0.221 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhcCCcccccCcccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhc
Q 006622 88 YLQLSVTVLAAFCRVPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMST 167 (638)
Q Consensus 88 ~~~LavsvLaaF~~~pe~A~~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~ 167 (638)
++.+++.+|.-.|.+++--.--...+-||.+++.+..++++.+-.+....+..+| ..++-++.+++.|+++.+......
T Consensus 386 ~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa-~~~rnaqlm~~g~gL~~L~~ra~~ 464 (708)
T PF05804_consen 386 FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLA-LNKRNAQLMCEGNGLQSLMKRALK 464 (708)
T ss_pred hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHh-cCHHHHHHHHhcCcHHHHHHHHHh
Confidence 4567999999999977654333444578999999887776655456777778887 688899999999999998766542
Q ss_pred ccCCcchHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHhhhhhhhhhHHHHhhc
Q 006622 168 FADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAV-LHNALKFESLHLLTAVLSSNYSALLHEALRV 246 (638)
Q Consensus 168 ~~~~s~~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~-~~~~~Kfe~l~~L~~lL~~~~~~~~~~~l~~ 246 (638)
.. - .+|..++...+... ......|...+..++..... ...+.+.|++-+|+-+-.+
T Consensus 465 --~~---D----~lLlKlIRNiS~h~--~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~------------ 521 (708)
T PF05804_consen 465 --TR---D----PLLLKLIRNISQHD--GPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIP------------ 521 (708)
T ss_pred --cc---c----HHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccC------------
Confidence 11 1 23333444332111 01112233344444443222 3456677777777665432
Q ss_pred CCCcchhHHHHH-HHHHHHhcCCChhhhhh
Q 006622 247 MPDSKWSMYMRV-GVVAILQNRVAPAEKLQ 275 (638)
Q Consensus 247 ~~~~~W~~~ir~-GL~~IL~skv~~~qR~~ 275 (638)
+-.|..-+.. ++-+.|.+.+.|..-.+
T Consensus 522 --~ld~~~ll~~~~llp~L~~~L~~g~~~d 549 (708)
T PF05804_consen 522 --DLDWAQLLQEYNLLPWLKDLLKPGASED 549 (708)
T ss_pred --CcCHHHHHHhCCHHHHHHHHhCCCCCCh
Confidence 3366555543 66666666655543333
No 11
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=88.80 E-value=4 Score=42.83 Aligned_cols=182 Identities=15% Similarity=0.129 Sum_probs=119.7
Q ss_pred hHHHHHHHHHHHHHhcCCcccccCcccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHH
Q 006622 85 RDAYLQLSVTVLAAFCRVPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQ 164 (638)
Q Consensus 85 ~~~~~~LavsvLaaF~~~pe~A~~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~ 164 (638)
-+...-.+++..++|...-++.++- +-||.+.+.+... +.++-..|+.+|..++ ...+-+..+ +. .+..+|..
T Consensus 29 i~e~al~al~n~aaf~~nq~~Ir~~---Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls-~~~en~~~I-k~-~i~~Vc~~ 101 (254)
T PF04826_consen 29 IQEKALIALGNSAAFPFNQDIIRDL---GGISLIGSLLNDP-NPSVREKALNALNNLS-VNDENQEQI-KM-YIPQVCEE 101 (254)
T ss_pred HHHHHHHHHHhhccChhHHHHHHHc---CCHHHHHHHcCCC-ChHHHHHHHHHHHhcC-CChhhHHHH-HH-HHHHHHHH
Confidence 4556667777888888766666653 4457788877764 4555577999999996 355555554 32 47776666
Q ss_pred HhcccCCcchHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhhhHHHHh
Q 006622 165 MSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEAL 244 (638)
Q Consensus 165 i~~~~~~s~~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~~~~~~~~~~l 244 (638)
+...+-++.....++++|..|=... .+-.-+...++.+-+-........|++++++|.-+=... .-....+
T Consensus 102 ~~s~~lns~~Q~agLrlL~nLtv~~-------~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np--~~~~~Ll 172 (254)
T PF04826_consen 102 TVSSPLNSEVQLAGLRLLTNLTVTN-------DYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENP--DMTRELL 172 (254)
T ss_pred HhcCCCCCHHHHHHHHHHHccCCCc-------chhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCH--HHHHHHH
Confidence 6554556666678888888772221 222223333444444444555678899999887665543 2222211
Q ss_pred hcCCCcchhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhcCCC
Q 006622 245 RVMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEE 290 (638)
Q Consensus 245 ~~~~~~~W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~G~~ 290 (638)
......++..++++..+.+-...+|.+.+++-+.++.+
T Consensus 173 --------~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 173 --------SAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred --------hccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 12345788889999999999999999999999988755
No 12
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=87.23 E-value=6.5 Score=34.04 Aligned_cols=109 Identities=12% Similarity=0.191 Sum_probs=69.6
Q ss_pred chhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCCcchHHHHHHHHHHHHhcccccc
Q 006622 114 KVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLEI 193 (638)
Q Consensus 114 rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~s~~~e~Al~LL~~LL~~~~~~~ 193 (638)
-||.+++.+.+.+ ......++.+|..++...+++.+.+++.|+++.+...+.. +...-...|+..|..+..... .
T Consensus 8 ~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~v~~~a~~~L~~l~~~~~-~- 82 (120)
T cd00020 8 GLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS--EDEEVVKAALWALRNLAAGPE-D- 82 (120)
T ss_pred ChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC--CCHHHHHHHHHHHHHHccCcH-H-
Confidence 4688888887655 4456889999999975458999999999999998655542 344556777888887766541 1
Q ss_pred ccccchhhHH--HHHHHHHHHHhhhhhhhhHHHHHHHHHh
Q 006622 194 ITNDYLSELS--TIVTVVAREFAVLHNALKFESLHLLTAV 231 (638)
Q Consensus 194 ~~~~~~~~l~--~lv~~lA~~F~~~~~~~Kfe~l~~L~~l 231 (638)
....+. .+++.+.+.....+...+-.++.+|..+
T Consensus 83 ----~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 83 ----NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred ----HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 111111 1344444444444555555566665544
No 13
>PF05536 Neurochondrin: Neurochondrin
Probab=82.70 E-value=15 Score=42.57 Aligned_cols=193 Identities=18% Similarity=0.126 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHh---hhhccccCc--hhHHHHHHHHHHhhcCchhhHHHHHhhhhhhhhccccCCCCCchhHHHHhh
Q 006622 391 LNETIGVVLEYLQDA---KEHERKKGN--DLLASVRLVGSYLAETPHACKEKVRELLQHMLSIEGEDEPSPFYSVFFLLP 465 (638)
Q Consensus 391 L~Ea~~~VL~~L~~~---~~~~~~k~~--~vlAsvRvLgawLAEe~salk~~v~~LLPfll~~~~~~~~~~~d~lrfLLP 465 (638)
+-|++| ..||..- +......++ ..=.++-+|.+|...+..+--+++..-+|+++.+-..... ...+.--+-
T Consensus 46 v~~aig--~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~--~~~v~dalq 121 (543)
T PF05536_consen 46 VFEAIG--FKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSD--LETVDDALQ 121 (543)
T ss_pred HHHhcC--hhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCc--hhHHHHHHH
Confidence 337777 4777762 222111122 2447889999999977777679999999999999765322 244455555
Q ss_pred hhcccccchhhhhHhhccCChHHHHHHHHHHhcCCCccccCchhHHHHHHHHHHHHhcCCCcccCCCcccHHHHHHHHHh
Q 006622 466 MLCQTTMEIEGCKDLVSSGMYKAVAECLIKLIGPGRVTVEDDGCIFLACDTILNLLLKKEQVRFPMDESTSIHLLKALAY 545 (638)
Q Consensus 466 ~Lc~lT~e~~gr~iL~s~~~~~~L~~~l~~~~~~~~~~~~~~~~l~~aC~illNl~v~~~~~~i~~~~~~F~~ll~~l~~ 545 (638)
-|..+...++|++.|++.|+...|++.+.. ..-.+..+..++.|++...+.-........|..++..|.+
T Consensus 122 cL~~Ias~~~G~~aLl~~g~v~~L~ei~~~----------~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~ 191 (543)
T PF05536_consen 122 CLLAIASSPEGAKALLESGAVPALCEIIPN----------QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLAR 191 (543)
T ss_pred HHHHHHcCcHhHHHHHhcCCHHHHHHHHHh----------CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHH
Confidence 566777899999999999999999998866 1246888999999998875532233344566666666665
Q ss_pred hccCCCCcchHHHHHhHHHHhcccCChHHhhcCCCCCchhHHHHHHHHHHHHhhc
Q 006622 546 WTEDSNDPTIIMMASCICALLFDSTSEEALVNNTYFDSNSVNSLSRLFARSLASW 600 (638)
Q Consensus 546 ~~~~~~~~~~~~laa~~~tl~l~~~~e~~l~~~~~~~~~~l~~~~~l~~~~l~~~ 600 (638)
-.-..+..... -+-.+ |+-.+.+.+..-...--+++-+..+..-|..-|++-
T Consensus 192 ~fs~~~~~~kf-ell~~--L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr 243 (543)
T PF05536_consen 192 DFSSFHGEDKF-ELLEF--LSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSR 243 (543)
T ss_pred HHHhhccchHH-HHHHH--HHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcC
Confidence 55442222222 11122 222222222211111255677777887777777653
No 14
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=80.28 E-value=9.7 Score=40.55 Aligned_cols=158 Identities=18% Similarity=0.225 Sum_probs=92.5
Q ss_pred cHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHH
Q 006622 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVL 96 (638)
Q Consensus 17 ~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvL 96 (638)
...-.+++|.+.|..=+..++.++|+++..++...-...=+.+ +.+-..|++.. ..+...|...|+..|
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l--~~ll~~L~~~l---------~~~~~~~~~~av~~L 174 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEAL--PKLLQWLSSQL---------SSSDSELQYIAVQCL 174 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHH--HHHHHHHH-TT----------HHHH---HHHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHH--HHHHHHHHHhh---------cCCCcchHHHHHHHH
Confidence 6777888888888888888999999998875555333111122 22333333321 123556889999999
Q ss_pred HHhcCCccccc---CcccccchhHHHHhh---hcccccchHHHHHHHHHHH--HhcccchhhHHhhcCchHHHHHHHhcc
Q 006622 97 AAFCRVPEIAS---SEDMVSKVPPILELM---LKESGTSILEECYEFLYLV--TNATGDGVTTLYESGGMKVLAFQMSTF 168 (638)
Q Consensus 97 aaF~~~pe~A~---~~~~v~rIP~l~~~l---~~~~~~~~~~d~~~~L~~i--a~s~~~G~~~l~~~g~v~~l~~~i~~~ 168 (638)
..+.+.|+... + .+.++.|.+++ ...+....+..-|+.+.++ -+-.++..+.+...+.++.++..+..
T Consensus 175 ~~LL~~~~~R~~f~~---~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~- 250 (312)
T PF03224_consen 175 QNLLRSKEYRQVFWK---SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKD- 250 (312)
T ss_dssp HHHHTSHHHHHHHHT---HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH-
T ss_pred HHHhCcchhHHHHHh---cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHh-
Confidence 99999888773 4 44455566666 2333444568889988776 33688899999999999998555543
Q ss_pred cCCcchHHHHHHHHHHHHhcc
Q 006622 169 ADGSRLMELAIRLLQLMLSKL 189 (638)
Q Consensus 169 ~~~s~~~e~Al~LL~~LL~~~ 189 (638)
....--+-.++.+|..+++..
T Consensus 251 ~~KEKvvRv~la~l~Nl~~~~ 271 (312)
T PF03224_consen 251 SIKEKVVRVSLAILRNLLSKA 271 (312)
T ss_dssp --SHHHHHHHHHHHHHTTSSS
T ss_pred cccchHHHHHHHHHHHHHhcc
Confidence 233333445555555555543
No 15
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=79.92 E-value=14 Score=38.29 Aligned_cols=135 Identities=18% Similarity=0.279 Sum_probs=88.8
Q ss_pred chhhHHHHHHHHhcCCCCCHH----------------HHHHHHHh-cCchhHHHHHh--cCCCCCCCC-C-CCCcchHHH
Q 006622 30 DEQRLAGLLVVTKFCKGDDAV----------------SLRKIYDA-VGPRFLDRLLR--TGLGKGINS-G-NSSENRDAY 88 (638)
Q Consensus 30 D~~kFvgLlLvtkl~~~~d~~----------------~~~~v~~A-iG~~FL~RLL~--T~~~~~~~~-~-~~~~~~~~~ 88 (638)
|+..|-.++-=|+++..+|.. .-+++-|+ -..+|+.||+. .+.... .+ . -...+..-|
T Consensus 2 Dd~~F~~~l~ds~VL~~Kd~~~WnW~~I~~ll~gpl~n~krl~e~~~~~kF~kRLl~FyrP~~~r-fs~~~~~~~~~~~y 80 (226)
T PF14666_consen 2 DDATFRQMLRDSKVLTTKDFTKWNWDLILELLEGPLLNPKRLDEALKSTKFFKRLLSFYRPFKYR-FSNLDLNTKNNQKY 80 (226)
T ss_pred CHHHHHHHHHhcCccccCCCCccCHHHHHHHHhCCccccchhHHHHhcChHHHHHHHhcCCcccc-ccccccccccchHH
Confidence 667788888888888876643 23577777 67899999994 111111 00 0 112345889
Q ss_pred HHHHHHHHHHhcCCcccccCcccccchhHHHHhhhccc-----------------ccchHHHHHHHHHHHHhcccchhhH
Q 006622 89 LQLSVTVLAAFCRVPEIASSEDMVSKVPPILELMLKES-----------------GTSILEECYEFLYLVTNATGDGVTT 151 (638)
Q Consensus 89 ~~LavsvLaaF~~~pe~A~~~~~v~rIP~l~~~l~~~~-----------------~~~~~~d~~~~L~~ia~s~~~G~~~ 151 (638)
..+|..++..+-..||-..-=..-.-||.+++++.+.+ ..++..+=+..+=.++ ++++|.+.
T Consensus 81 ~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS-~~~~Gl~l 159 (226)
T PF14666_consen 81 VRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLS-STPNGLKL 159 (226)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHh-CChhHHHH
Confidence 99999999999998885531112233466666664431 1565566666665555 89999999
Q ss_pred HhhcCchHHHHHHHhc
Q 006622 152 LYESGGMKVLAFQMST 167 (638)
Q Consensus 152 l~~~g~v~~l~~~i~~ 167 (638)
+-+.|....+ -.|..
T Consensus 160 Le~~~if~~l-~~i~~ 174 (226)
T PF14666_consen 160 LERWNIFTML-YHIFS 174 (226)
T ss_pred HHHCCHHHHH-HHHHc
Confidence 9999888875 55543
No 16
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.02 E-value=2.4e+02 Score=34.30 Aligned_cols=263 Identities=11% Similarity=0.102 Sum_probs=147.3
Q ss_pred CCCCCccHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHH-------------------------------HHHHhc
Q 006622 11 ESAPSPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLR-------------------------------KIYDAV 59 (638)
Q Consensus 11 ~~~~~~~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~-------------------------------~v~~Ai 59 (638)
|-+.+....+.++||++..=+||++|-+.+.=++.. +.+-.+ ..-+|.
T Consensus 69 g~dIdFGhmEaV~LLss~kysEKqIGYl~is~L~n~-n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~ 147 (938)
T KOG1077|consen 69 GYDIDFGHMEAVNLLSSNKYSEKQIGYLFISLLLNE-NSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAF 147 (938)
T ss_pred cCccccchHHHHHHhhcCCccHHHHhHHHHHHHHhc-chHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHh
Confidence 445677888999999999999999998766655543 333222 122222
Q ss_pred CchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhcCCcccccCcccccchhHH---------------HHhhhc
Q 006622 60 GPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAAFCRVPEIASSEDMVSKVPPI---------------LELMLK 124 (638)
Q Consensus 60 G~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLaaF~~~pe~A~~~~~v~rIP~l---------------~~~l~~ 124 (638)
..+ +.+||+++. +-.-+=++=|+.+|+-|=..||+-.-.+-..||-.| ++++.+
T Consensus 148 ~~D-I~KlLvS~~----------~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk 216 (938)
T KOG1077|consen 148 ADD-IPKLLVSGS----------SMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVK 216 (938)
T ss_pred hhh-hHHHHhCCc----------chHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHH
Confidence 222 348888862 235566788999999999999988654555554333 233332
Q ss_pred -ccc--cchHHHHHHHHHHHHhcccch-hhHHhhcC-----chHHHHH--HHhcccCCcchHHHHHHHHHHHHhcccccc
Q 006622 125 -ESG--TSILEECYEFLYLVTNATGDG-VTTLYESG-----GMKVLAF--QMSTFADGSRLMELAIRLLQLMLSKLSLEI 193 (638)
Q Consensus 125 -~~~--~~~~~d~~~~L~~ia~s~~~G-~~~l~~~g-----~v~~l~~--~i~~~~~~s~~~e~Al~LL~~LL~~~~~~~ 193 (638)
-++ -+.+..|..-|..++++..-. ++.. -++ ..-+++. |+|.-++..-....-.++|..+|.+.....
T Consensus 217 ~~p~~yk~~~~~avs~L~riv~~~~t~~qdYT-yy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~ 295 (938)
T KOG1077|consen 217 KNPESYKTCLPLAVSRLSRIVVVVGTSLQDYT-YYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPP 295 (938)
T ss_pred cCCHHHhhhHHHHHHHHHHHHhhcccchhhce-eecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCc
Confidence 222 333455556665554322222 1111 111 1112222 333324444445666788999998874211
Q ss_pred c--c-ccchhhHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHhhhhhhhhh-----HHHHhhcCCCcchhHHHHHHHHHHH
Q 006622 194 I--T-NDYLSELSTIVTVVAREFAVLHN-ALKFESLHLLTAVLSSNYSAL-----LHEALRVMPDSKWSMYMRVGVVAIL 264 (638)
Q Consensus 194 ~--~-~~~~~~l~~lv~~lA~~F~~~~~-~~Kfe~l~~L~~lL~~~~~~~-----~~~~l~~~~~~~W~~~ir~GL~~IL 264 (638)
. . ......-+-++.+|+-.|..+.. +.=-.+|..|..|++.. +.. ++.--+.+.+.--.+.++.-...|+
T Consensus 296 ~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii 374 (938)
T KOG1077|consen 296 KSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHR-ETNIRYLALESMCKLASSEFSIDAVKKHQDTII 374 (938)
T ss_pred cccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcc-cccchhhhHHHHHHHHhccchHHHHHHHHHHHH
Confidence 1 0 11122233455667776665543 44467789999999887 222 1221112233444566776666666
Q ss_pred hcCC---ChhhhhhHHHHHHHHHhhc
Q 006622 265 QNRV---APAEKLQALILAESIVSIK 287 (638)
Q Consensus 265 ~skv---~~~qR~~aL~Laa~ll~l~ 287 (638)
.|-= .-+-|..|+.|...|.|.-
T Consensus 375 ~sLkterDvSirrravDLLY~mcD~~ 400 (938)
T KOG1077|consen 375 NSLKTERDVSIRRRAVDLLYAMCDVS 400 (938)
T ss_pred HHhccccchHHHHHHHHHHHHHhchh
Confidence 5532 3455677888877776654
No 17
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=61.24 E-value=1.1e+02 Score=38.77 Aligned_cols=178 Identities=16% Similarity=0.194 Sum_probs=113.8
Q ss_pred cchHHHHHHHHHHHHHhcC-Cccccc----CcccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCc
Q 006622 83 ENRDAYLQLSVTVLAAFCR-VPEIAS----SEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGG 157 (638)
Q Consensus 83 ~~~~~~~~LavsvLaaF~~-~pe~A~----~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~ 157 (638)
.|.+.-..++++-|..+-+ .|++|+ ...+++..|.|...+....+..+-..|++++..+. +..+--..+.+.|+
T Consensus 1736 lPs~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~T-an~~Cv~~~a~~~v 1814 (2235)
T KOG1789|consen 1736 LPTETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLAT-ANKECVTDLATCNV 1814 (2235)
T ss_pred CChHHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHh-cccHHHHHHHhhhH
Confidence 4667788999999999886 999995 56889999999999987777666799999998884 79999999999998
Q ss_pred hHHHHHHHhcccCCcchHHHHHHHHHHHHhcccccccc-ccc--hhhHH---------HHHHHHHHHHhhhh-----h-h
Q 006622 158 MKVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLEIIT-NDY--LSELS---------TIVTVVAREFAVLH-----N-A 219 (638)
Q Consensus 158 v~~l~~~i~~~~~~s~~~e~Al~LL~~LL~~~~~~~~~-~~~--~~~l~---------~lv~~lA~~F~~~~-----~-~ 219 (638)
+..+ -++. ....-..+.+++.|..|-+.. ...|. .+| ...+. +.-+.-|..|+..+ + -
T Consensus 1815 L~~L-L~lL--HS~PS~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPr 1890 (2235)
T KOG1789|consen 1815 LTTL-LTLL--HSQPSMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPR 1890 (2235)
T ss_pred HHHH-HHHH--hcChHHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCc
Confidence 8776 4443 223334678888887665543 11111 011 00011 11122333344322 2 2
Q ss_pred hhHHHHHHHHHhhhhhh----hhhHHHH--hhcCCCcchhHHHHHHHHHHHh
Q 006622 220 LKFESLHLLTAVLSSNY----SALLHEA--LRVMPDSKWSMYMRVGVVAILQ 265 (638)
Q Consensus 220 ~Kfe~l~~L~~lL~~~~----~~~~~~~--l~~~~~~~W~~~ir~GL~~IL~ 265 (638)
..+-+.++|+..|...- ++.+|.. ....|.-.|-+..|..+..++.
T Consensus 1891 V~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~ 1942 (2235)
T KOG1789|consen 1891 VTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIID 1942 (2235)
T ss_pred eeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHH
Confidence 23566777777776551 2334442 2234667997777777666644
No 18
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=54.96 E-value=1.1e+02 Score=34.15 Aligned_cols=169 Identities=15% Similarity=0.168 Sum_probs=100.2
Q ss_pred HHHHhhhhhHHHHHhcchhhhhhhhcccC-C---Cchh-hhhh-hhhhhhhhhHHHHHHHHHHHhhcc-cccCCCCChHH
Q 006622 311 LLLVLESSRVEIAVLLNELAYLKYEASKN-T---SSTA-ESFF-SKQRNVAIAFSLVEKIIRLISNIA-ESEGGLIDDNT 383 (638)
Q Consensus 311 llLll~la~VEVrm~Leela~~~~e~~~~-~---~~~~-e~i~-~~~~~L~~Cf~ilE~~I~~l~~~~-e~~~~~L~~~~ 383 (638)
+-.++++...||...+++....+++.+.. + +... ..|. .++..|=..+..+-+.+.+ .... +.-...++
T Consensus 28 ~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk~l~~~~~~-~~~~~~~lrnl~D--- 103 (379)
T PF06025_consen 28 LDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLKFLSHAMQH-SGGFGDRLRNLID--- 103 (379)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhcc-CCCcccccccccc---
Confidence 66889999999999999421111111110 0 1111 1222 2345666777777777763 2110 00001222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccCchhH-HHHHHHHHHhhcCchhhHHHHH-hhhhhhhhccc-cCCCCCchhH
Q 006622 384 FMKVMNGLNETIGVVLEYLQDAKEHERKKGNDLL-ASVRLVGSYLAETPHACKEKVR-ELLQHMLSIEG-EDEPSPFYSV 460 (638)
Q Consensus 384 ~~k~~~~L~Ea~~~VL~~L~~~~~~~~~k~~~vl-AsvRvLgawLAEe~salk~~v~-~LLPfll~~~~-~~~~~~~d~l 460 (638)
-..+...|+..+ + +...=|+-++ .++-+++.|+-.||+++.--.. +|.+.++.--. ++-....+++
T Consensus 104 ~s~L~~sL~~Il----~-------n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l 172 (379)
T PF06025_consen 104 SSSLLSSLKHIL----E-------NPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVL 172 (379)
T ss_pred hhhHHHHHHHHH----h-------CccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHH
Confidence 122233333322 2 2222266665 7889999999999999876555 66776666655 5555666777
Q ss_pred HHHhhhhcccccchhhhhHhhccCChHHHHHHHH
Q 006622 461 FFLLPMLCQTTMEIEGCKDLVSSGMYKAVAECLI 494 (638)
Q Consensus 461 rfLLP~Lc~lT~e~~gr~iL~s~~~~~~L~~~l~ 494 (638)
.-+-.+|.-+.-+..|.+.+.+.+...-+++.|.
T Consensus 173 ~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~ 206 (379)
T PF06025_consen 173 TSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFT 206 (379)
T ss_pred HHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhC
Confidence 7776666666679999999998877666666553
No 19
>PTZ00429 beta-adaptin; Provisional
Probab=53.33 E-value=2.6e+02 Score=34.05 Aligned_cols=135 Identities=11% Similarity=0.141 Sum_probs=83.2
Q ss_pred cchHHHHHHHHHHHHHhcCCcccccCcccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHH
Q 006622 83 ENRDAYLQLSVTVLAAFCRVPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLA 162 (638)
Q Consensus 83 ~~~~~~~~LavsvLaaF~~~pe~A~~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~ 162 (638)
.++.+-+.=|++++..|-.+|++..+.+++ |.|.+. ....+.+++.-|+..|+.|....+++ .-+..+.+..++
T Consensus 152 ~~pYVRKtAalai~Kly~~~pelv~~~~~~---~~L~~L-L~D~dp~Vv~nAl~aL~eI~~~~~~~--l~l~~~~~~~Ll 225 (746)
T PTZ00429 152 PDPYVRKTAAMGLGKLFHDDMQLFYQQDFK---KDLVEL-LNDNNPVVASNAAAIVCEVNDYGSEK--IESSNEWVNRLV 225 (746)
T ss_pred CCHHHHHHHHHHHHHHHhhCcccccccchH---HHHHHH-hcCCCccHHHHHHHHHHHHHHhCchh--hHHHHHHHHHHH
Confidence 457777777999999988888877555555 447774 45677888899999999995222222 223445566654
Q ss_pred HHHhcccCCcchHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhh
Q 006622 163 FQMSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSS 234 (638)
Q Consensus 163 ~~i~~~~~~s~~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~ 234 (638)
..+.+ .+.+.|. .+|.. |.+.. +.+..+...++..+...+.....+.-|++++++-.+...
T Consensus 226 ~~L~e-~~EW~Qi----~IL~l-L~~y~-----P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 226 YHLPE-CNEWGQL----YILEL-LAAQR-----PSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred HHhhc-CChHHHH----HHHHH-HHhcC-----CCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 44432 1222221 33332 23332 123445667777777777777777888888877766544
No 20
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=53.23 E-value=24 Score=29.15 Aligned_cols=52 Identities=23% Similarity=0.358 Sum_probs=42.7
Q ss_pred hhcccccchhhhhHhhccCChHHHHHHHHHHhcCCCccccCchhHHHHHHHHHHHHhc-CCC
Q 006622 466 MLCQTTMEIEGCKDLVSSGMYKAVAECLIKLIGPGRVTVEDDGCIFLACDTILNLLLK-KEQ 526 (638)
Q Consensus 466 ~Lc~lT~e~~gr~iL~s~~~~~~L~~~l~~~~~~~~~~~~~~~~l~~aC~illNl~v~-~~~ 526 (638)
+|.++++...||+.|.+.+.+.++.++-.. +.+..+..+|.=+.|+++- |++
T Consensus 1 ~LllL~~T~~GR~~lR~~~vY~IlRe~h~~---------E~d~~V~e~~erlV~iLirdE~e 53 (58)
T PF04064_consen 1 ALLLLCATREGREYLREKGVYPILRELHKW---------EEDEEVQEACERLVQILIRDEPE 53 (58)
T ss_pred CHhHHhccHHHHHHHHHcCchHHHHHHHhc---------cCCHHHHHHHHHHHHHHhcCCCc
Confidence 366788899999999999999999886532 4568899999999999986 443
No 21
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=52.04 E-value=3.2e+02 Score=28.98 Aligned_cols=227 Identities=19% Similarity=0.201 Sum_probs=123.1
Q ss_pred HHHHhcccCCchhhHHHHHHHHhcCCC---CCHHHHHHHHHhcC-------chhHHHHHhcCCCCCCCCCCCCcchHHHH
Q 006622 20 DCLKLLKGERDEQRLAGLLVVTKFCKG---DDAVSLRKIYDAVG-------PRFLDRLLRTGLGKGINSGNSSENRDAYL 89 (638)
Q Consensus 20 ~cl~lLk~~~D~~kFvgLlLvtkl~~~---~d~~~~~~v~~AiG-------~~FL~RLL~T~~~~~~~~~~~~~~~~~~~ 89 (638)
-|+.+|.+....+=..+|=|+.|+++. +|.+++..+.+..+ |.=+--|+-.|. -+..-.
T Consensus 11 ~~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL-----------~Ss~t~ 79 (262)
T PF14225_consen 11 TAVACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGL-----------RSSSTY 79 (262)
T ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCcc-----------CCCCcH
Confidence 367778888888888899999999887 44555554544433 333444444442 233456
Q ss_pred HHHHHHHHHhcCCcccc--cCc------ccccchhHHHHhhhccc---ccchHHHHHHHHHHHHhcccchhhHHhhcCch
Q 006622 90 QLSVTVLAAFCRVPEIA--SSE------DMVSKVPPILELMLKES---GTSILEECYEFLYLVTNATGDGVTTLYESGGM 158 (638)
Q Consensus 90 ~LavsvLaaF~~~pe~A--~~~------~~v~rIP~l~~~l~~~~---~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v 158 (638)
+..+.+|..+...|+-. .++ -++...|.++..+.+.. ....+.++.+.|..+| ...|... +
T Consensus 80 e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a--~~~~~~~------L 151 (262)
T PF14225_consen 80 ELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVA--EAQGLPN------L 151 (262)
T ss_pred HHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHH--HhCCCcc------H
Confidence 78889999998754443 233 14455567776665544 1112234444444443 2222221 2
Q ss_pred HHHHHHHhcccCCcchHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhh
Q 006622 159 KVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSA 238 (638)
Q Consensus 159 ~~l~~~i~~~~~~s~~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~~~~~ 238 (638)
.++ +..+..+.|. ..-+.+...+..+. +..-+++ -..++..+..-..+.....|-+.+++|..+++..+-.
T Consensus 152 a~i---l~~ya~~~fr--~~~dfl~~v~~~l~-~~f~P~~---~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~ 222 (262)
T PF14225_consen 152 ARI---LSSYAKGRFR--DKDDFLSQVVSYLR-EAFFPDH---EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR 222 (262)
T ss_pred HHH---HHHHHhcCCC--CHHHHHHHHHHHHH-HHhCchh---HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC
Confidence 221 2222334331 11122222222221 1111121 1234444555555566788999999999999887211
Q ss_pred hHHHHhhcCCCcchhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhcCC
Q 006622 239 LLHEALRVMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGE 289 (638)
Q Consensus 239 ~~~~~l~~~~~~~W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~G~ 289 (638)
..-..++.+-|...|++- +=.+||++....+...|.
T Consensus 223 -----------~~~~~dlispllrlL~t~----~~~eAL~VLd~~v~~s~s 258 (262)
T PF14225_consen 223 -----------SPHGADLISPLLRLLQTD----LWMEALEVLDEIVTRSGS 258 (262)
T ss_pred -----------CCcchHHHHHHHHHhCCc----cHHHHHHHHHHHHhhccc
Confidence 113344556666666554 445789988888888873
No 22
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=51.84 E-value=3.8e+02 Score=29.91 Aligned_cols=95 Identities=15% Similarity=0.140 Sum_probs=62.5
Q ss_pred HHHHhcCCcccccCcccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCCcch
Q 006622 95 VLAAFCRVPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRL 174 (638)
Q Consensus 95 vLaaF~~~pe~A~~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~s~~ 174 (638)
|+--|+-.|+.+..-+--+-+..|..-|....|.-+...|++..+.++ -++-|++.+...|.|..+|..|+-...+.|.
T Consensus 195 IieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLa-eteHgreflaQeglIdlicnIIsGadsdPfe 273 (524)
T KOG4413|consen 195 IIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELA-ETEHGREFLAQEGLIDLICNIISGADSDPFE 273 (524)
T ss_pred HHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHH-HHhhhhhhcchhhHHHHHHHHhhCCCCCcHH
Confidence 445566677777422222222222222322245556688999999997 7999999999999999997777654455666
Q ss_pred HHHHHHHHHHHHhccc
Q 006622 175 MELAIRLLQLMLSKLS 190 (638)
Q Consensus 175 ~e~Al~LL~~LL~~~~ 190 (638)
.-.|+-..+.++++.+
T Consensus 274 kfralmgfgkffgkea 289 (524)
T KOG4413|consen 274 KFRALMGFGKFFGKEA 289 (524)
T ss_pred HHHHHHHHHHHhcchH
Confidence 6677777777776653
No 23
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.86 E-value=2.2e+02 Score=32.11 Aligned_cols=125 Identities=20% Similarity=0.311 Sum_probs=84.0
Q ss_pred cHHHHHHhcccCCchhh-HHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHH
Q 006622 17 SLDDCLKLLKGERDEQR-LAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTV 95 (638)
Q Consensus 17 ~l~~cl~lLk~~~D~~k-FvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lavsv 95 (638)
.+.+-+.|....+|--| .||++| ..+ +.|..-.+.|-+|=|.+.+-|||++.+++- . ++
T Consensus 252 lv~~Lv~Lmd~~s~kvkcqA~lAL-rnl--asdt~Yq~eiv~ag~lP~lv~Llqs~~~pl-----------i-----la- 311 (550)
T KOG4224|consen 252 LVPALVDLMDDGSDKVKCQAGLAL-RNL--ASDTEYQREIVEAGSLPLLVELLQSPMGPL-----------I-----LA- 311 (550)
T ss_pred hHHHHHHHHhCCChHHHHHHHHHH-hhh--cccchhhhHHHhcCCchHHHHHHhCcchhH-----------H-----HH-
Confidence 56667777777755444 455543 222 246666889999999999999998863311 1 11
Q ss_pred HHHhcC-----Cc--ccc-cCcccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHH
Q 006622 96 LAAFCR-----VP--EIA-SSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQM 165 (638)
Q Consensus 96 LaaF~~-----~p--e~A-~~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i 165 (638)
+.||- -| |.. .+..++ -.|+.+++..+.+.+-.-|..+|-.+|.+++....++.+.|+|+++-+-+
T Consensus 312 -sVaCIrnisihplNe~lI~dagfl---~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~ 385 (550)
T KOG4224|consen 312 -SVACIRNISIHPLNEVLIADAGFL---RPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELL 385 (550)
T ss_pred -HHHHHhhcccccCcccceecccch---hHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHH
Confidence 12231 11 111 244443 45899998888777678889999888767999999999999999974444
No 24
>PF12295 Symplekin_C: Symplekin tight junction protein C terminal; InterPro: IPR022075 This domain family is found in eukaryotes, and is approximately 180 amino acids in length. There is a single completely conserved residue P that may be functionally important. Symplekn has been localized, by light and electron microscopy, to the plaque associated with the cytoplasmic face of the tight junction-containing zone (zonula occludens) of polar epithelial cells and of Sertoli cells of testis. However, both the mRNA and the protein can also be detected in a wide range of cell types that do not form tight junctions. Careful analyses have revealed that the protein occurs in all these diverse cells in the nucleoplasm, and only in those cells forming tight junctions is it recruited, partly but specifically, to the plaque structure of the zonula occludens.
Probab=46.68 E-value=97 Score=30.99 Aligned_cols=68 Identities=25% Similarity=0.250 Sum_probs=44.8
Q ss_pred CcccHHHHHHHHHhhccCCCCcchHHHHHhHHHHhcccCChHHhhcCCCCCchhHHHHHHHHHHHHhhcCCCCCCCCccc
Q 006622 532 DESTSIHLLKALAYWTEDSNDPTIIMMASCICALLFDSTSEEALVNNTYFDSNSVNSLSRLFARSLASWGQGAPYGKKED 611 (638)
Q Consensus 532 ~~~~F~~ll~~l~~~~~~~~~~~~~~laa~~~tl~l~~~~e~~l~~~~~~~~~~l~~~~~l~~~~l~~~~~~~~~~~~~~ 611 (638)
.....+..+.-|+++ +.--.+ ||-|==.++..||.+..=..+-+++||.|..-.. .
T Consensus 91 ~~evla~~l~ql~~~----~~lP~L----------fmRTviq~~~~~p~L~~FV~~iL~rLi~kqvW~~---~------- 146 (183)
T PF12295_consen 91 TQEVLASALQQLVEQ----PPLPLL----------FMRTVIQALQKYPSLRSFVSNILSRLIQKQVWKN---K------- 146 (183)
T ss_pred CHHHHHHHHHHHHCC----CCCcHH----------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcC---h-------
Confidence 345666677777766 111222 3444446777899888888888999998865332 2
Q ss_pred ccHHHHHHHhHHhHhhh
Q 006622 612 MDLLEIVTAGYSRWAHR 628 (638)
Q Consensus 612 ~~~~~~~~~g~~~~~~r 628 (638)
.+|+ ||-+|+.+
T Consensus 147 -~lW~----Gfi~C~~~ 158 (183)
T PF12295_consen 147 -KLWE----GFIKCAKR 158 (183)
T ss_pred -hHHH----HHHHHHHH
Confidence 4665 88888776
No 25
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.55 E-value=1e+02 Score=37.82 Aligned_cols=128 Identities=21% Similarity=0.250 Sum_probs=76.9
Q ss_pred cccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCCcchHHHHHHHHHHH--Hhc
Q 006622 111 MVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLM--LSK 188 (638)
Q Consensus 111 ~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~s~~~e~Al~LL~~L--L~~ 188 (638)
|-.-||.|+.+++......+--.|+.||+-.+-..|+--..++++++|+.++..+.. ...+|.|=|-|+.| ++|
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~----IeyiDvAEQ~LqALE~iSR 284 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLT----IEYIDVAEQSLQALEKISR 284 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhh----hhhhHHHHHHHHHHHHHHh
Confidence 444579999999877766666899999977766799999999999999998766643 22344444444332 122
Q ss_pred cccccccc--------cchhhHHHHHHHHHH----HHh--hhhhhhh--HHHHHHHHHhhhhhhhhhHHH
Q 006622 189 LSLEIITN--------DYLSELSTIVTVVAR----EFA--VLHNALK--FESLHLLTAVLSSNYSALLHE 242 (638)
Q Consensus 189 ~~~~~~~~--------~~~~~l~~lv~~lA~----~F~--~~~~~~K--fe~l~~L~~lL~~~~~~~~~~ 242 (638)
-.+..+.+ .|.+=|..-.++.|- ..| ...++.+ .|++.+|..+|+.-+..+++.
T Consensus 285 ~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies 354 (1051)
T KOG0168|consen 285 RHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIES 354 (1051)
T ss_pred hccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHH
Confidence 21111111 111112222222222 122 1134555 467899999998887777665
No 26
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=46.44 E-value=5.1e+02 Score=29.77 Aligned_cols=139 Identities=17% Similarity=0.241 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHhcCCcccc----cCcccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHH
Q 006622 86 DAYLQLSVTVLAAFCRVPEIA----SSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVL 161 (638)
Q Consensus 86 ~~~~~LavsvLaaF~~~pe~A----~~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l 161 (638)
..-+.+++..+.-..+.++.+ .+.++ +|.++.++. ..|..+...|..+|..++ .++.|.+.+...+.+..+
T Consensus 91 ~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l---~~~i~~~L~-~~d~~Va~~A~~~L~~l~-~~~~~~~~l~~~~~~~~L 165 (503)
T PF10508_consen 91 PKVRRLALKQLGRIARHSEGAAQLLVDNEL---LPLIIQCLR-DPDLSVAKAAIKALKKLA-SHPEGLEQLFDSNLLSKL 165 (503)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhcCccH---HHHHHHHHc-CCcHHHHHHHHHHHHHHh-CCchhHHHHhCcchHHHH
Confidence 456778777776666655442 34444 477777775 455666799999999998 799999999998888886
Q ss_pred HHHHhcccCCcchHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhh
Q 006622 162 AFQMSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSN 235 (638)
Q Consensus 162 ~~~i~~~~~~s~~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~~ 235 (638)
..-+. ...+--.-+.+++++.+.... .+.. +.... ..+++.+-.+...+.--.|.-++.+|..+-...
T Consensus 166 ~~l~~--~~~~~vR~Rv~el~v~i~~~S-~~~~--~~~~~-sgll~~ll~eL~~dDiLvqlnalell~~La~~~ 233 (503)
T PF10508_consen 166 KSLMS--QSSDIVRCRVYELLVEIASHS-PEAA--EAVVN-SGLLDLLLKELDSDDILVQLNALELLSELAETP 233 (503)
T ss_pred HHHHh--ccCHHHHHHHHHHHHHHHhcC-HHHH--HHHHh-ccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh
Confidence 33332 113333345666666654432 1111 11000 125666666666654556788888888887743
No 27
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=45.12 E-value=1.2e+02 Score=32.22 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=75.7
Q ss_pred ccHHHHHHhcccC-Cc---hhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHH
Q 006622 16 PSLDDCLKLLKGE-RD---EQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQL 91 (638)
Q Consensus 16 ~~l~~cl~lLk~~-~D---~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~L 91 (638)
..+...++.|++. +. +-..+|+-.+..+++ ....+..+|++=|.+++-++|+...... .....+-.|..+
T Consensus 146 ~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~--~~~~R~~f~~~~~v~~l~~iL~~~~~~~----~~~~~Ql~Y~~l 219 (312)
T PF03224_consen 146 EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR--SKEYRQVFWKSNGVSPLFDILRKQATNS----NSSGIQLQYQAL 219 (312)
T ss_dssp HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT--SHHHHHHHHTHHHHHHHHHHHH-------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC--cchhHHHHHhcCcHHHHHHHHHhhcccC----CCCchhHHHHHH
Confidence 4567777787764 21 223777878888875 5566788899989999999995321111 112334567777
Q ss_pred HHHHHHHhcC--CcccccCcccccchhHHHHhhhcccccchHHHHHHHHHHHH
Q 006622 92 SVTVLAAFCR--VPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVT 142 (638)
Q Consensus 92 avsvLaaF~~--~pe~A~~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia 142 (638)
-.-=+-+|.. .+++..+. -||.+++++..+.-|-++.-|+.+|..+.
T Consensus 220 l~lWlLSF~~~~~~~~~~~~----~i~~L~~i~~~~~KEKvvRv~la~l~Nl~ 268 (312)
T PF03224_consen 220 LCLWLLSFEPEIAEELNKKY----LIPLLADILKDSIKEKVVRVSLAILRNLL 268 (312)
T ss_dssp HHHHHHTTSHHHHHHHHTTS----HHHHHHHHHHH--SHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHhccc----hHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 6666666663 33443333 68999999999998999999999998885
No 28
>PF06209 COBRA1: Cofactor of BRCA1 (COBRA1); InterPro: IPR010405 This family consists of several cofactor of BRCA1 (COBRA1) like proteins. It is thought that COBRA1 along with BRCA1 is involved in chromatin unfolding. COBRA1 is recruited to the chromosome site by the first BRCT repeat of BRCA1, and is itself sufficient to induce chromatin unfolding. BRCA1 mutations that enhance chromatin unfolding also increase its affinity for, and recruitment of, COBRA1. It is thought that that reorganisation of higher levels of chromatin structure is an important regulated step in BRCA1-mediated nuclear functions [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=43.50 E-value=5.2e+02 Score=29.94 Aligned_cols=105 Identities=20% Similarity=0.157 Sum_probs=66.8
Q ss_pred chhHHHHhhhhcccccchhhhhHhhccCC----------hHHHHHHHHHHhcCCCccccCchhHHHHHHHHHHHHhcCCC
Q 006622 457 FYSVFFLLPMLCQTTMEIEGCKDLVSSGM----------YKAVAECLIKLIGPGRVTVEDDGCIFLACDTILNLLLKKEQ 526 (638)
Q Consensus 457 ~d~lrfLLP~Lc~lT~e~~gr~iL~s~~~----------~~~L~~~l~~~~~~~~~~~~~~~~l~~aC~illNl~v~~~~ 526 (638)
.+.++-+||+|+-+-+|+.-|++-.+.+. ..-+-+-|..++ .++..+-..+|.-.+.++..++.
T Consensus 262 ~~ivtkFLP~L~slmvdd~~r~~~~kl~~de~~~a~~~~~~~l~~~f~~~l------~~~~va~~l~l~YiLh~~~~rd~ 335 (474)
T PF06209_consen 262 KEIVTKFLPLLMSLMVDDQLRDVDAKLPDDERAEAITSISSTLPDAFEAYL------RESRVARKLALYYILHLLKKRDK 335 (474)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccccCCCccHHHHHHHH------HhhHHHHHHHHHHHHHHHhcccH
Confidence 47888899999999999888865443111 112222222222 13456667777777777766543
Q ss_pred cccCCCcccHHHHHHHHHhhccC--CCCcchHHHHHhHHHHhcccCChHH
Q 006622 527 VRFPMDESTSIHLLKALAYWTED--SNDPTIIMMASCICALLFDSTSEEA 574 (638)
Q Consensus 527 ~~i~~~~~~F~~ll~~l~~~~~~--~~~~~~~~laa~~~tl~l~~~~e~~ 574 (638)
..+.++|++|++.... .+++-.-.+++++..+.-.+++|++
T Consensus 336 -------~al~rlLp~L~~~~~d~~~~d~FlH~Lv~~L~~l~~ef~~e~f 378 (474)
T PF06209_consen 336 -------NALMRLLPALVECDDDSAFEDIFLHLLVSSLVQLSDEFSTEDF 378 (474)
T ss_pred -------HHHHHHHHHhhhhcccccccchHHHHHHHHHHhhHHhcCChhH
Confidence 3578888888887665 4555555677777666666666653
No 29
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.79 E-value=5.1e+02 Score=32.89 Aligned_cols=236 Identities=14% Similarity=0.158 Sum_probs=0.0
Q ss_pred CCCCCCCccHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhH------HHHHhcCCCCCCCCCCCC
Q 006622 9 PEESAPSPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFL------DRLLRTGLGKGINSGNSS 82 (638)
Q Consensus 9 p~~~~~~~~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL------~RLL~T~~~~~~~~~~~~ 82 (638)
|+ +=++.++--.+-.++.++..|=.|+++++++.. -+|-.|- .||+..+...+
T Consensus 113 ~e--~WPell~~L~q~~~S~~~~~rE~al~il~s~~~------------~~~~~~~~~~~~l~~lf~q~~~d~------- 171 (1075)
T KOG2171|consen 113 PE--KWPELLQFLFQSTKSPNPSLRESALLILSSLPE------------TFGNTLQPHLDDLLRLFSQTMTDP------- 171 (1075)
T ss_pred cc--chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhh------------hhccccchhHHHHHHHHHHhccCC-------
Q ss_pred cchHHHHHHHHHHHHHhcCCcc--cccCcccccchhHHHHhh---hcccccchHHHHHHHHHHHHhcccchhhHHhhcCc
Q 006622 83 ENRDAYLQLSVTVLAAFCRVPE--IASSEDMVSKVPPILELM---LKESGTSILEECYEFLYLVTNATGDGVTTLYESGG 157 (638)
Q Consensus 83 ~~~~~~~~LavsvLaaF~~~pe--~A~~~~~v~rIP~l~~~l---~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~ 157 (638)
+.--+..|+.-+.+|.-.-| -.-.+.+..-+|.++.++ ...+|......++++|.-++-+.|+=-.-.++. .
T Consensus 172 --s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~-i 248 (1075)
T KOG2171|consen 172 --SSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ-I 248 (1075)
T ss_pred --cchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH-H
Q ss_pred hHHHHHHHhcccCCcchHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhhhhhh------------------
Q 006622 158 MKVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNA------------------ 219 (638)
Q Consensus 158 v~~l~~~i~~~~~~s~~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~~~~------------------ 219 (638)
+.-....+.+..-+.-....||++|.++... ...+...++.-.++++..+..-+....+.
T Consensus 249 i~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~--Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~ 326 (1075)
T KOG2171|consen 249 IQFSLEIAKNKELENSIRHLALEFLVSLSEY--APAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPY 326 (1075)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHHHHh--hHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcH
Q ss_pred -hhHHHHHHHHHhhhhh--hhhhHHHHhhcCCCcchhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhcC
Q 006622 220 -LKFESLHLLTAVLSSN--YSALLHEALRVMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKG 288 (638)
Q Consensus 220 -~Kfe~l~~L~~lL~~~--~~~~~~~~l~~~~~~~W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~G 288 (638)
.--+++..|+.=|++. -+.-.+-.-+-..+..| ++|+.||.-.+.+.+-++
T Consensus 327 ~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w------------------~~R~AaL~Als~i~EGc~ 380 (1075)
T KOG2171|consen 327 RAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEW------------------KERHAALLALSVIAEGCS 380 (1075)
T ss_pred HHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCH------------------HHHHHHHHHHHHHHcccH
No 30
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=42.53 E-value=3.3e+02 Score=30.13 Aligned_cols=141 Identities=17% Similarity=0.174 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCCcchHHHHHHHHHHHHhccccccccccchhhHHHHHHHHH
Q 006622 131 LEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVA 210 (638)
Q Consensus 131 ~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~s~~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA 210 (638)
-.+|++-|--.+ -.=+-+.-|+..|+...+...+. ...+--.+.|..++.+.+......+........+..++..++
T Consensus 100 ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~--~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls 176 (342)
T KOG2160|consen 100 KEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLE--NSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILS 176 (342)
T ss_pred HHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhc--CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHc
Confidence 366777664443 35566677888887777655332 233445689999999999876333222112224445444444
Q ss_pred HHHhhhhhhhhHHHHHHHHHhhhhhhhhhHHHHhhcCCCcchhHHHHHHHHHHHhcC-CChhhhhhHHHHHHHHHhh
Q 006622 211 REFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWSMYMRVGVVAILQNR-VAPAEKLQALILAESIVSI 286 (638)
Q Consensus 211 ~~F~~~~~~~Kfe~l~~L~~lL~~~~~~~~~~~l~~~~~~~W~~~ir~GL~~IL~sk-v~~~qR~~aL~Laa~ll~l 286 (638)
..+.+..|-.++..+++++...- |...... +-..| .+|+++|+++ ....-+-.|+-|.+.+++.
T Consensus 177 ---~~~~~~~r~kaL~AissLIRn~~--~g~~~fl--~~~G~-----~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 177 ---SDDPNTVRTKALFAISSLIRNNK--PGQDEFL--KLNGY-----QVLRDVLQSNNTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred ---cCCCchHHHHHHHHHHHHHhcCc--HHHHHHH--hcCCH-----HHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 34456777889999999998872 2222221 33448 9999999997 5566666677776666654
No 31
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=42.25 E-value=1.7e+02 Score=33.67 Aligned_cols=120 Identities=13% Similarity=0.218 Sum_probs=73.5
Q ss_pred hhHHHHhhhcccccchHHHHHHHHHHHHh-cc--------cchh----hHHhhcCchHHHHHHHhcccCCcchHHHHHHH
Q 006622 115 VPPILELMLKESGTSILEECYEFLYLVTN-AT--------GDGV----TTLYESGGMKVLAFQMSTFADGSRLMELAIRL 181 (638)
Q Consensus 115 IP~l~~~l~~~~~~~~~~d~~~~L~~ia~-s~--------~~G~----~~l~~~g~v~~l~~~i~~~~~~s~~~e~Al~L 181 (638)
||.|++.+....+...-.-|.++|.+|-. +. ..|+ ..|.+...|.+|+..|.. ..++...--++.+
T Consensus 64 I~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~-~~~~s~lvn~v~I 142 (475)
T PF04499_consen 64 IPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLN-SQGGSSLVNGVSI 142 (475)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhc-CCCcchHHHHHHH
Confidence 45588888754443344555666655521 11 1122 345566678887777752 2457778899999
Q ss_pred HHHHHhccccccc------------cccchhhHHHHHHHHHHHHhhhh-----------------------hhhhHHHHH
Q 006622 182 LQLMLSKLSLEII------------TNDYLSELSTIVTVVAREFAVLH-----------------------NALKFESLH 226 (638)
Q Consensus 182 L~~LL~~~~~~~~------------~~~~~~~l~~lv~~lA~~F~~~~-----------------------~~~Kfe~l~ 226 (638)
+..|+.+.+.+.. ...++..+..++..++..+..-+ +-.||.+|+
T Consensus 143 lieLIRknnsdy~~~~~~~~~~~~p~~rdpi~l~~lL~~~~~~l~~f~~lL~~~~~~~~l~Tt~G~l~~PLG~~RlkI~E 222 (475)
T PF04499_consen 143 LIELIRKNNSDYDEQLYTTIESHPPSERDPIYLGTLLKAFSPRLPDFHKLLLNPPKKPPLETTFGVLIPPLGFERLKICE 222 (475)
T ss_pred HHHHHHhcccccchhhccccccCCCCccchhhHHHHHHHHHHhHHHHHHHHhchhhccccccCCCCCCCCcchHHHHHHH
Confidence 9999976643322 11244455566666664322111 467899999
Q ss_pred HHHHhhhhh
Q 006622 227 LLTAVLSSN 235 (638)
Q Consensus 227 ~L~~lL~~~ 235 (638)
+++.+|...
T Consensus 223 LiAeLLhcs 231 (475)
T PF04499_consen 223 LIAELLHCS 231 (475)
T ss_pred HHHHHHhCC
Confidence 999999876
No 32
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=41.73 E-value=2.3e+02 Score=29.78 Aligned_cols=97 Identities=8% Similarity=0.143 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhcCCcccccCcccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhc
Q 006622 88 YLQLSVTVLAAFCRVPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMST 167 (638)
Q Consensus 88 ~~~LavsvLaaF~~~pe~A~~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~ 167 (638)
.+--|+.+|.-++..++. |.-+...||.|+..++.++..+ -..++.+|..++ ..|.=.+.++..+++..+ -.++.
T Consensus 111 ~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~-k~~vLk~L~nLS-~np~~~~~Ll~~q~~~~~-~~Lf~ 185 (254)
T PF04826_consen 111 VQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKT-KVQVLKVLVNLS-ENPDMTRELLSAQVLSSF-LSLFN 185 (254)
T ss_pred HHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHH-HHHHHHHHHHhc-cCHHHHHHHHhccchhHH-HHHHc
Confidence 334578888888765544 6778889999999998877655 377899999997 688888999988888875 44543
Q ss_pred ccCCcchHHHHHHHHHHHHhcc
Q 006622 168 FADGSRLMELAIRLLQLMLSKL 189 (638)
Q Consensus 168 ~~~~s~~~e~Al~LL~~LL~~~ 189 (638)
-....--...++.+...+-...
T Consensus 186 ~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 186 SSESKENLLRVLTFFENINENI 207 (254)
T ss_pred cCCccHHHHHHHHHHHHHHHhh
Confidence 1111212344555555554443
No 33
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=41.04 E-value=1e+03 Score=31.80 Aligned_cols=220 Identities=13% Similarity=0.105 Sum_probs=118.9
Q ss_pred HHHHHHHHHhcCCChhhhhhHHHHHH--HHHhhcCCCcccCCCCCCCCcCCCCccchHHHHhhhhhHHHHHhcchhhhhh
Q 006622 256 MRVGVVAILQNRVAPAEKLQALILAE--SIVSIKGEEWLIGKIDLPDIQDSIPSDRCLLLVLESSRVEIAVLLNELAYLK 333 (638)
Q Consensus 256 ir~GL~~IL~skv~~~qR~~aL~Laa--~ll~l~G~~Wl~~~~~~~~~~~~~~~~kFllLll~la~VEVrm~Leela~~~ 333 (638)
|-..+..|+.--...++|+..-.|.. ++-.++-.+..++++ ++.+....=|=.. +-|.|-.+.
T Consensus 315 lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp--------~tnd~~~~aLRrY----a~MALTNLT--- 379 (2195)
T KOG2122|consen 315 LCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGP--------ETNDGECNALRRY----AGMALTNLT--- 379 (2195)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCC--------CCCcHHHHHHHHH----HHHHhhccc---
Confidence 33777788888888999988766643 355566666777763 1234332222222 236666654
Q ss_pred hhcccCCCchhhhhhhhhhhhhhhHHHHHHHHHHHhhcccccCCCCChHHHHHHHH----------------HHHHHHHH
Q 006622 334 YEASKNTSSTAESFFSKQRNVAIAFSLVEKIIRLISNIAESEGGLIDDNTFMKVMN----------------GLNETIGV 397 (638)
Q Consensus 334 ~e~~~~~~~~~e~i~~~~~~L~~Cf~ilE~~I~~l~~~~e~~~~~L~~~~~~k~~~----------------~L~Ea~~~ 397 (638)
|++ + -+.+.|++-=..||.+|.-+... ++.+.||+. +|+|+-.
T Consensus 380 FGD----------v-~NKa~LCs~rgfMeavVAQL~s~---------peeL~QV~AsvLRNLSWRAD~nmKkvLrE~Gs- 438 (2195)
T KOG2122|consen 380 FGD----------V-ANKATLCSQRGFMEAVVAQLISA---------PEELLQVYASVLRNLSWRADSNMKKVLRETGS- 438 (2195)
T ss_pred ccc----------c-cchhhhhhhhhHHHHHHHHHhcC---------hHHHHHHHHHHHHhccccccccHHHHHHhhhh-
Confidence 432 1 14568888888999999766543 233444433 2333221
Q ss_pred HHHHHHHhhhhccccCch---hHHHHHHHHHHhhcCchhhHHHHHhhhhhhhh---ccccCC-----CCCchhHHHHhhh
Q 006622 398 VLEYLQDAKEHERKKGND---LLASVRLVGSYLAETPHACKEKVRELLQHMLS---IEGEDE-----PSPFYSVFFLLPM 466 (638)
Q Consensus 398 VL~~L~~~~~~~~~k~~~---vlAsvRvLgawLAEe~salk~~v~~LLPfll~---~~~~~~-----~~~~d~lrfLLP~ 466 (638)
|.-..+.+- ..+++.. |+.+.==|++...|.--..=. |-+-|-||++ |.+... .+.+-+||..
T Consensus 439 VtaLa~~al--~~~kEsTLKavLSALWNLSAHcteNKA~iCa-VDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNV--- 512 (2195)
T KOG2122|consen 439 VTALAACAL--RNKKESTLKAVLSALWNLSAHCTENKAEICA-VDGALAFLVGTLSYEGQSNTLAIIESAGGILRNV--- 512 (2195)
T ss_pred HHHHHHHHH--HhcccchHHHHHHHHhhhhhcccccchhhhc-ccchHHHHHhhccccCCcchhhhhhcCccHHHHH---
Confidence 111111110 1111122 444444466666665432211 3344666554 443211 1223344442
Q ss_pred hcccccchhhhhHhhccCChHHHHHHHHHHhcCCCccccCchhHHHHHHHHHHHHhcCCC
Q 006622 467 LCQTTMEIEGCKDLVSSGMYKAVAECLIKLIGPGRVTVEDDGCIFLACDTILNLLLKKEQ 526 (638)
Q Consensus 467 Lc~lT~e~~gr~iL~s~~~~~~L~~~l~~~~~~~~~~~~~~~~l~~aC~illNl~v~~~~ 526 (638)
=.||.+.++=|.||-.+.-... |.+++.+.. =+.+..+||+|-||.+.-|+
T Consensus 513 SS~IAt~E~yRQILR~~NCLq~----LLQ~LKS~S-----LTiVSNaCGTLWNLSAR~p~ 563 (2195)
T KOG2122|consen 513 SSLIATCEDYRQILRRHNCLQT----LLQHLKSHS-----LTIVSNACGTLWNLSARSPE 563 (2195)
T ss_pred HhHhhccchHHHHHHHhhHHHH----HHHHhhhcc-----eEEeecchhhhhhhhcCCHH
Confidence 2456667777888876654444 555666653 35667899999999998776
No 34
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=40.41 E-value=56 Score=34.74 Aligned_cols=95 Identities=22% Similarity=0.168 Sum_probs=65.1
Q ss_pred CHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHH-HHHHHHHhcC--CcccccCcccccchhHHHHhhhc
Q 006622 48 DAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQL-SVTVLAAFCR--VPEIASSEDMVSKVPPILELMLK 124 (638)
Q Consensus 48 d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~L-avsvLaaF~~--~pe~A~~~~~v~rIP~l~~~l~~ 124 (638)
..++.+.-.+|==|-||.+.|.|+... -+.+|+.| ++.|++++-. +.|+-+-=--.+-||+.+.+|..
T Consensus 109 HpdTr~~FL~A~iPlylYpfL~Tt~~~---------r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~ 179 (293)
T KOG3036|consen 109 HPDTRRAFLRAHIPLYLYPFLNTTSKS---------RPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMES 179 (293)
T ss_pred CcchHHHHHHccChhhhHHhhhccccC---------CchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhc
Confidence 344566666777789999999998432 36778777 6899999985 55544322234567999999999
Q ss_pred ccccchHHHHHHHHHHHHhcccchhhHHh
Q 006622 125 ESGTSILEECYEFLYLVTNATGDGVTTLY 153 (638)
Q Consensus 125 ~~~~~~~~d~~~~L~~ia~s~~~G~~~l~ 153 (638)
+|+.+- .-|.-++.-|- ..+.|-.+.+
T Consensus 180 GSelSK-tvA~fIlqKIl-ldD~GL~YiC 206 (293)
T KOG3036|consen 180 GSELSK-TVATFILQKIL-LDDVGLYYIC 206 (293)
T ss_pred ccHHHH-HHHHHHHHHHh-hccccHHHHH
Confidence 888663 34455556664 4666666544
No 35
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=40.14 E-value=1.7e+02 Score=31.14 Aligned_cols=101 Identities=19% Similarity=0.322 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHhcC-Ccc---cccCcccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHH
Q 006622 86 DAYLQLSVTVLAAFCR-VPE---IASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVL 161 (638)
Q Consensus 86 ~~~~~LavsvLaaF~~-~pe---~A~~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l 161 (638)
..-..+|+.||-..|- .|. ++.+.... -.|++.+....+..+..-|+.+|.++..-++.-.+.|-+.+++..+
T Consensus 105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m---~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v 181 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLLHPPSRKLFHREQNM---ELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTV 181 (257)
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHhhhhhH---HHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHH
Confidence 3456779999999995 554 33333333 4477888655555556779999988866899999999999999998
Q ss_pred HHHHhcccCCcchHHHHHHHHHHHHhccccc
Q 006622 162 AFQMSTFADGSRLMELAIRLLQLMLSKLSLE 192 (638)
Q Consensus 162 ~~~i~~~~~~s~~~e~Al~LL~~LL~~~~~~ 192 (638)
+..++ +.+...+.-++++-+|+-...++
T Consensus 182 ~~llk---~~~~~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 182 CSLLK---SKSTDRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred HHHHc---cccccHHHhHHHHHHHHHHHccc
Confidence 44443 55566777788888888877543
No 36
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=39.23 E-value=2.2e+02 Score=32.29 Aligned_cols=90 Identities=14% Similarity=0.168 Sum_probs=53.8
Q ss_pred ccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCC--cchH-HHHHHHHHHHHhcccccc--ccccch
Q 006622 125 ESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADG--SRLM-ELAIRLLQLMLSKLSLEI--ITNDYL 199 (638)
Q Consensus 125 ~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~--s~~~-e~Al~LL~~LL~~~~~~~--~~~~~~ 199 (638)
..+..++.+|+.||..+.--++..++.+.+.|....++..+....+. .+.. -..++|| +|++....+. -|.++.
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLL-FLlTa~~~~~~~~L~~e~ 121 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLL-FLLTALRPDDRKKLIEEH 121 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHH-HHHhcCChhHHHHHHHHh
Confidence 34566679999999777557999999999999999987777643221 2222 2344444 4455443221 122333
Q ss_pred hhHHHHHHHHHHHHhh
Q 006622 200 SELSTIVTVVAREFAV 215 (638)
Q Consensus 200 ~~l~~lv~~lA~~F~~ 215 (638)
.....++..|.+....
T Consensus 122 ~~~~~l~~~L~~~l~~ 137 (446)
T PF10165_consen 122 HGVELLTEALERHLKV 137 (446)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 3444555556654443
No 37
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=39.14 E-value=1.2e+02 Score=31.85 Aligned_cols=116 Identities=20% Similarity=0.261 Sum_probs=72.7
Q ss_pred hccccCchhHHHHHHHHHHhhcCchhhHHHHH-----------hhhhhhhhccccCCCCCchhHHHHh----hhhc--cc
Q 006622 408 HERKKGNDLLASVRLVGSYLAETPHACKEKVR-----------ELLQHMLSIEGEDEPSPFYSVFFLL----PMLC--QT 470 (638)
Q Consensus 408 ~~~~k~~~vlAsvRvLgawLAEe~salk~~v~-----------~LLPfll~~~~~~~~~~~d~lrfLL----P~Lc--~l 470 (638)
..|.+||+-+++.|=|-.||-.+....+ .|. .|+|.++++.+++ .--...++.|. |..+ .-
T Consensus 3 ~~Y~~g~dcl~~LkdL~r~lr~dd~~~~-~v~r~lg~~~iv~~DLiPiL~~~~~~~-~l~~~~l~LLV~LT~P~~~~~~~ 80 (266)
T PF04821_consen 3 GVYVKGDDCLECLKDLKRFLRRDDEDQR-DVRRQLGEWNIVQKDLIPILISYKDDD-KLFLACLRLLVNLTWPIELLVES 80 (266)
T ss_pred CceecCHhHHHHHHHHHHHHHHhCcchH-HHHHHHHHhchhhhhHHHHHHhccCch-HHHHHHHHHHHHhCCCHHHhccC
Confidence 4577788888888888888887777664 222 6789999998732 10012444443 3333 11
Q ss_pred c-cchhhh--------------hHhhccCChHHHHHHHHHHhcCC--CccccCchhHHHHHHHHHHHHhcCC
Q 006622 471 T-MEIEGC--------------KDLVSSGMYKAVAECLIKLIGPG--RVTVEDDGCIFLACDTILNLLLKKE 525 (638)
Q Consensus 471 T-~e~~gr--------------~iL~s~~~~~~L~~~l~~~~~~~--~~~~~~~~~l~~aC~illNl~v~~~ 525 (638)
. .+..++ ++|++.+..+++++.+...++-. ....++...|..+-..|-|++-..+
T Consensus 81 ~~~~~~~~~~~~~l~~~l~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~ 152 (266)
T PF04821_consen 81 QPKDKNQRRNIPELLKYLQSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPD 152 (266)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 1 222233 66777777777777776664322 2234566889999999999998833
No 38
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=39.09 E-value=2.4e+02 Score=28.01 Aligned_cols=197 Identities=15% Similarity=0.162 Sum_probs=89.5
Q ss_pred HHHHHHhc--c--cCCchhhHHHHHHHHhcCCCC-CHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHH
Q 006622 18 LDDCLKLL--K--GERDEQRLAGLLVVTKFCKGD-DAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLS 92 (638)
Q Consensus 18 l~~cl~lL--k--~~~D~~kFvgLlLvtkl~~~~-d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~La 92 (638)
+++....| + ..+=+.|.-||--+.++++++ ..+....+++.+. +++.-+...-. ..+..-..-|
T Consensus 5 ~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~-~~~~~i~~~l~----------d~Rs~v~~~A 73 (228)
T PF12348_consen 5 FEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLR-QLLDAIIKQLS----------DLRSKVSKTA 73 (228)
T ss_dssp -GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH----HHHHH-S-----------HH---HHHHH
T ss_pred HHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHH-HhHHHHHHHHh----------hhHHHHHHHH
Confidence 34444555 2 235567799999999999876 2233344444443 33333333210 1122334455
Q ss_pred HHHHHHhcC-CcccccCcccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCC
Q 006622 93 VTVLAAFCR-VPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADG 171 (638)
Q Consensus 93 vsvLaaF~~-~pe~A~~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~ 171 (638)
+.++..++. ...- -+|.+-.-+|.|++.+.... ..+...|.+||..+....+-+.+.+. .. ...... ..+
T Consensus 74 ~~~l~~l~~~l~~~-~~~~~~~~l~~Ll~~~~~~~-~~i~~~a~~~L~~i~~~~~~~~~~~~-----~~-l~~~~~-~Kn 144 (228)
T PF12348_consen 74 CQLLSDLARQLGSH-FEPYADILLPPLLKKLGDSK-KFIREAANNALDAIIESCSYSPKILL-----EI-LSQGLK-SKN 144 (228)
T ss_dssp HHHHHHHHHHHGGG-GHHHHHHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--HHHH-----HH-HHHHTT--S-
T ss_pred HHHHHHHHHHHhHh-HHHHHHHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHHCCcHHHHHH-----HH-HHHHHh-CCC
Confidence 555555553 1111 22334444566666665433 34567888888888532221232211 11 222221 244
Q ss_pred cchHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhh
Q 006622 172 SRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSS 234 (638)
Q Consensus 172 s~~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~ 234 (638)
......+++.|..++.+.+.+.-..++...+..+++.+.+-......+.+-.+-..+..|...
T Consensus 145 ~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 145 PQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 555688899999888887511111123334566777777755555555554444444444333
No 39
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.44 E-value=6.6e+02 Score=27.90 Aligned_cols=119 Identities=16% Similarity=0.212 Sum_probs=75.1
Q ss_pred hcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhcC-CcccccCcccc--cchhHHHHhhhcccccchHHHH
Q 006622 58 AVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAAFCR-VPEIASSEDMV--SKVPPILELMLKESGTSILEEC 134 (638)
Q Consensus 58 AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLaaF~~-~pe~A~~~~~v--~rIP~l~~~l~~~~~~~~~~d~ 134 (638)
=+...++..||. .. + .....-+.+|..|+++-.+ .|..- ..+. +-.+.|+.++++.++.++-.-+
T Consensus 120 l~~~ggl~~ll~-~l-~--------~~~~~lR~~Aa~Vigt~~qNNP~~Q--e~v~E~~~L~~Ll~~ls~~~~~~~r~ka 187 (342)
T KOG2160|consen 120 LISLGGLVPLLG-YL-E--------NSDAELRELAARVIGTAVQNNPKSQ--EQVIELGALSKLLKILSSDDPNTVRTKA 187 (342)
T ss_pred HhhccCHHHHHH-Hh-c--------CCcHHHHHHHHHHHHHHHhcCHHHH--HHHHHcccHHHHHHHHccCCCchHHHHH
Confidence 345567777776 31 1 1256788999999998875 66543 1111 1346688888866666654555
Q ss_pred HHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCC-cchHHHHHHHHHHHHhcc
Q 006622 135 YEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADG-SRLMELAIRLLQLMLSKL 189 (638)
Q Consensus 135 ~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~-s~~~e~Al~LL~~LL~~~ 189 (638)
+-.+++.---.+.|...|..-++...|-. ++.-++. -.-.-.|+.|+..|+..-
T Consensus 188 L~AissLIRn~~~g~~~fl~~~G~~~L~~-vl~~~~~~~~lkrK~~~Ll~~Ll~~~ 242 (342)
T KOG2160|consen 188 LFAISSLIRNNKPGQDEFLKLNGYQVLRD-VLQSNNTSVKLKRKALFLLSLLLQED 242 (342)
T ss_pred HHHHHHHHhcCcHHHHHHHhcCCHHHHHH-HHHcCCcchHHHHHHHHHHHHHHHhh
Confidence 55554332378999999999988888744 4431212 233467788888877764
No 40
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.70 E-value=86 Score=34.35 Aligned_cols=83 Identities=24% Similarity=0.246 Sum_probs=62.6
Q ss_pred HhhhhhhhhccccCCC-CCc-hhHHHHhhhhcccccchhhhhHhhccCChHHHHHHHHHHhcCCCccccCchhHHHHHHH
Q 006622 439 RELLQHMLSIEGEDEP-SPF-YSVFFLLPMLCQTTMEIEGCKDLVSSGMYKAVAECLIKLIGPGRVTVEDDGCIFLACDT 516 (638)
Q Consensus 439 ~~LLPfll~~~~~~~~-~~~-d~lrfLLP~Lc~lT~e~~gr~iL~s~~~~~~L~~~l~~~~~~~~~~~~~~~~l~~aC~i 516 (638)
-..||-=++|-.+|.. .|- +..+-+|=++.+++++..||++|.+-|++..+.++-.. +.+.-+-.+|.-
T Consensus 238 m~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~---------e~ded~~~ace~ 308 (353)
T KOG2973|consen 238 MAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKW---------EEDEDIREACEQ 308 (353)
T ss_pred HhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcC---------CCcHHHHHHHHH
Confidence 3445555577665543 233 56667999999999999999999999999998885321 245677899999
Q ss_pred HHHHHhc-CCCcccC
Q 006622 517 ILNLLLK-KEQVRFP 530 (638)
Q Consensus 517 llNl~v~-~~~~~i~ 530 (638)
+.|.+++ +|+.|+-
T Consensus 309 vvq~Lv~~e~~~G~~ 323 (353)
T KOG2973|consen 309 VVQMLVRLEPEIGIL 323 (353)
T ss_pred HHHHHHhcccccchh
Confidence 9999998 7776543
No 41
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=33.99 E-value=81 Score=22.23 Aligned_cols=38 Identities=29% Similarity=0.273 Sum_probs=30.3
Q ss_pred hhhhHhhccCChHHHHHHHHHHhcCCCccccCchhHHHHHHHHHHHH
Q 006622 475 EGCKDLVSSGMYKAVAECLIKLIGPGRVTVEDDGCIFLACDTILNLL 521 (638)
Q Consensus 475 ~gr~iL~s~~~~~~L~~~l~~~~~~~~~~~~~~~~l~~aC~illNl~ 521 (638)
+.++.+...|+.+.|++++. . .+......+|++|.|+.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~----~-----~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLK----S-----EDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHc----C-----CCHHHHHHHHHHHHHHc
Confidence 47788889999999888764 1 24578889999999985
No 42
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=33.78 E-value=7.3e+02 Score=28.35 Aligned_cols=106 Identities=11% Similarity=0.073 Sum_probs=73.1
Q ss_pred HhcccC-CchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhcC
Q 006622 23 KLLKGE-RDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAAFCR 101 (638)
Q Consensus 23 ~lLk~~-~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLaaF~~ 101 (638)
..|++. +.....+|+-.+..+++.+. .+...|++=|.++|-++|++... .-+-.|..+-+-=+-+|..
T Consensus 150 ~~l~~~~~~~~~~~~v~~L~~LL~~~~--~R~~f~~~~~v~~L~~~L~~~~~---------~~Ql~Y~~ll~lWlLSF~~ 218 (429)
T cd00256 150 EQLNNITNNDYVQTAARCLQMLLRVDE--YRFAFVLADGVPTLVKLLSNATL---------GFQLQYQSIFCIWLLTFNP 218 (429)
T ss_pred HHhhccCCcchHHHHHHHHHHHhCCch--HHHHHHHccCHHHHHHHHhhccc---------cHHHHHHHHHHHHHHhccH
Confidence 444443 34445555566666666422 23456778899999999997521 2256788888888888875
Q ss_pred Cccccc-CcccccchhHHHHhhhcccccchHHHHHHHHHHHH
Q 006622 102 VPEIAS-SEDMVSKVPPILELMLKESGTSILEECYEFLYLVT 142 (638)
Q Consensus 102 ~pe~A~-~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia 142 (638)
. .+. ..+ -+-||.+++++..+.-|-++.-|+.+|..+.
T Consensus 219 ~--~~~~~~~-~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll 257 (429)
T cd00256 219 H--AAEVLKR-LSLIQDLSDILKESTKEKVIRIVLAIFRNLI 257 (429)
T ss_pred H--HHHhhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 3 221 111 4578999999999998999999999998875
No 43
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.77 E-value=8.4e+02 Score=28.60 Aligned_cols=147 Identities=14% Similarity=0.251 Sum_probs=91.1
Q ss_pred CccHHHHHHhcccC-CchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCC-----------CCCCCCCCCC
Q 006622 15 SPSLDDCLKLLKGE-RDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGL-----------GKGINSGNSS 82 (638)
Q Consensus 15 ~~~l~~cl~lLk~~-~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~-----------~~~~~~~~~~ 82 (638)
.-.+.+.+..|+.. +.+-+|-+---+|++..+....+ +.+-++=-..-+-+||.++. ++.++-+|.=
T Consensus 108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T-~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~ 186 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQT-KVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDC 186 (514)
T ss_pred cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhc-cccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHH
Confidence 35688889999754 68888888888888887633332 12222222233556666642 1111000000
Q ss_pred -------------------cchHHHHHHHHHHHHHhcCCcccccC-cccccchhHHHHhhhcccccchHHHHHHHHHHHH
Q 006622 83 -------------------ENRDAYLQLSVTVLAAFCRVPEIASS-EDMVSKVPPILELMLKESGTSILEECYEFLYLVT 142 (638)
Q Consensus 83 -------------------~~~~~~~~LavsvLaaF~~~pe~A~~-~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia 142 (638)
..+-.++.=+.-.|+-||+-.+=+.+ ..+-.-+|.|+..+ ++.|+.+..|++-.|.-++
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLT 265 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence 01235777788899999986653322 23344446655555 5566666799999997664
Q ss_pred hcccchhhHHhhcCchHHHHH
Q 006622 143 NATGDGVTTLYESGGMKVLAF 163 (638)
Q Consensus 143 ~s~~~G~~~l~~~g~v~~l~~ 163 (638)
-.+.+.-+.+++.|+++++..
T Consensus 266 dg~ne~iq~vi~~gvv~~LV~ 286 (514)
T KOG0166|consen 266 DGSNEKIQMVIDAGVVPRLVD 286 (514)
T ss_pred cCChHHHHHHHHccchHHHHH
Confidence 478888999999999999854
No 44
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=31.79 E-value=3.3e+02 Score=26.46 Aligned_cols=99 Identities=18% Similarity=0.077 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhcCC--cccccCcccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHH---HH
Q 006622 89 LQLSVTVLAAFCRV--PEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVL---AF 163 (638)
Q Consensus 89 ~~LavsvLaaF~~~--pe~A~~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l---~~ 163 (638)
+-.|+.++.+.|.. +|... ..-..++..++.++.+.++..+.+.|+.+|..+- ..-.|-..+.++.+.+.+ ..
T Consensus 42 rw~G~~Ll~~~~~~~~~e~l~-~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~-~~~~~~p~l~Rei~tp~l~~~i~ 119 (165)
T PF08167_consen 42 RWAGLCLLKVTVEQCSWEILL-SHGSQWLRALLSILEKPDPPSVLEAAIITLTRLF-DLIRGKPTLTREIATPNLPKFIQ 119 (165)
T ss_pred HHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-HHhcCCCchHHHHhhccHHHHHH
Confidence 56889999999974 67662 2225566779999988888777888899887774 344455555444333332 22
Q ss_pred HHhcccCCcchHHHHHHHHHHHHhcc
Q 006622 164 QMSTFADGSRLMELAIRLLQLMLSKL 189 (638)
Q Consensus 164 ~i~~~~~~s~~~e~Al~LL~~LL~~~ 189 (638)
.+..+.+.....+.++..|..++.+.
T Consensus 120 ~ll~l~~~~~~~~~~l~~L~~ll~~~ 145 (165)
T PF08167_consen 120 SLLQLLQDSSCPETALDALATLLPHH 145 (165)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHC
Confidence 22222333567888888888888876
No 45
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=31.43 E-value=1.5e+02 Score=26.97 Aligned_cols=72 Identities=13% Similarity=0.165 Sum_probs=51.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--CchhHHHHHHHHHHhhcCchhhHHHHHhhhhhhhhccc
Q 006622 378 LIDDNTFMKVMNGLNETIGVVLEYLQDAKEHERKK--GNDLLASVRLVGSYLAETPHACKEKVRELLQHMLSIEG 450 (638)
Q Consensus 378 ~L~~~~~~k~~~~L~Ea~~~VL~~L~~~~~~~~~k--~~~vlAsvRvLgawLAEe~salk~~v~~LLPfll~~~~ 450 (638)
.++.+....+...+.+.+..|++++.++-+..... ...+-++.+++++|+.--+...--. .+++++++.+-+
T Consensus 63 ~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~-~~~l~~~~~~l~ 136 (148)
T PF08389_consen 63 SLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN-SNLLNLIFQLLQ 136 (148)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS-SSHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc-HHHHHHHHHHcC
Confidence 37788889999999999999999999865544432 2356799999999999555433222 257777777663
No 46
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=30.72 E-value=73 Score=27.40 Aligned_cols=42 Identities=29% Similarity=0.396 Sum_probs=36.0
Q ss_pred chhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcC
Q 006622 114 KVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESG 156 (638)
Q Consensus 114 rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g 156 (638)
-||.++++..+++-.++-.-|+-+|..|+ .+++|++.|-+.|
T Consensus 29 iv~~iv~~a~~s~v~siRGT~fy~Lglis-~T~~G~~~L~~~g 70 (73)
T PF14668_consen 29 IVEDIVKIAENSPVLSIRGTCFYVLGLIS-STEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHh-CCHHHHHHHHHcC
Confidence 45778888888887888899999999998 7999999998876
No 47
>PF12516 DUF3719: Protein of unknown function (DUF3719); InterPro: IPR022194 This domain family is found in eukaryotes, and is approximately 70 amino acids in length. There is a conserved HLR sequence motif. There are two completely conserved residues (W and H) that may be functionally important.
Probab=28.86 E-value=20 Score=30.55 Aligned_cols=19 Identities=26% Similarity=0.774 Sum_probs=15.0
Q ss_pred HHHHHHhHHhHhhhcchHH
Q 006622 615 LEIVTAGYSRWAHRFPHIK 633 (638)
Q Consensus 615 ~~~~~~g~~~~~~r~p~~~ 633 (638)
.+-+-.=|..|..||||+|
T Consensus 11 ~~~L~~Ec~eW~~~fpHLR 29 (68)
T PF12516_consen 11 TQNLQEECQEWTSRFPHLR 29 (68)
T ss_pred cHHHHHHHHHHHHhCCeEE
Confidence 3445566999999999986
No 48
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=28.58 E-value=2.8e+02 Score=31.97 Aligned_cols=135 Identities=18% Similarity=0.267 Sum_probs=90.2
Q ss_pred CccHHHHHHhccc-CCchhhHHHHHHHHhcCCC------CCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHH
Q 006622 15 SPSLDDCLKLLKG-ERDEQRLAGLLVVTKFCKG------DDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDA 87 (638)
Q Consensus 15 ~~~l~~cl~lLk~-~~D~~kFvgLlLvtkl~~~------~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~ 87 (638)
+..++..+.+++. ++++.|==.+.+.+..++- +| ++.+.+|. ||+|++|++.=-. + ++-+...
T Consensus 264 ~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGD-eSMq~L~~--~p~~l~~~~sw~~--S-----~d~~l~t 333 (604)
T KOG4500|consen 264 NGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGD-ESMQKLHA--DPQFLDFLESWFR--S-----DDSNLIT 333 (604)
T ss_pred cchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCc-hHHHHHhc--CcHHHHHHHHHhc--C-----CchhHHH
Confidence 4567788899998 7888888888888776654 22 35666765 8899999986531 1 2233444
Q ss_pred HHHHHHHHHHHhcCCcccc---cCcccccchhHHHHhhhcc----cccchHHHHHHHHHHHHhcccchhhHHhhcCchHH
Q 006622 88 YLQLSVTVLAAFCRVPEIA---SSEDMVSKVPPILELMLKE----SGTSILEECYEFLYLVTNATGDGVTTLYESGGMKV 160 (638)
Q Consensus 88 ~~~LavsvLaaF~~~pe~A---~~~~~v~rIP~l~~~l~~~----~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~ 160 (638)
+-+|| +.-|.|-.+.. -+.+++++ |.+++.+. ++.+...-|+..|-.++. -....-+++..|+..+
T Consensus 334 ~g~La---igNfaR~D~~ci~~v~~~~~nk---L~~~l~~~~~vdgnV~~qhA~lsALRnl~I-Pv~nka~~~~aGvtea 406 (604)
T KOG4500|consen 334 MGSLA---IGNFARRDDICIQLVQKDFLNK---LISCLMQEKDVDGNVERQHACLSALRNLMI-PVSNKAHFAPAGVTEA 406 (604)
T ss_pred HHHHH---HHhhhccchHHHHHHHHHHHHH---HHHHHHHhcCCCccchhHHHHHHHHHhccc-cCCchhhccccchHHH
Confidence 44444 56888866665 37778777 78887652 235555667777766643 3345556788898888
Q ss_pred HHHHHh
Q 006622 161 LAFQMS 166 (638)
Q Consensus 161 l~~~i~ 166 (638)
+.-+..
T Consensus 407 IL~~lk 412 (604)
T KOG4500|consen 407 ILLQLK 412 (604)
T ss_pred HHHHHH
Confidence 876664
No 49
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.22 E-value=5.4e+02 Score=28.92 Aligned_cols=121 Identities=17% Similarity=0.242 Sum_probs=78.4
Q ss_pred HHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhcCCcccccCcccccch------hHHHHhhh-ccc
Q 006622 54 KIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAAFCRVPEIASSEDMVSKV------PPILELML-KES 126 (638)
Q Consensus 54 ~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLaaF~~~pe~A~~~~~v~rI------P~l~~~l~-~~~ 126 (638)
.|-|+=|.+-|-|++-. ++-+-++.|+=++|+.+. .+|.++++-+.| |.+...+. .++
T Consensus 278 ~I~e~GGl~tl~~~i~d------------~n~~~~r~l~k~~lslLr---alAG~DsvKs~IV~~gg~~~ii~l~~~h~~ 342 (461)
T KOG4199|consen 278 SIAESGGLDTLLRCIDD------------SNEQGNRTLAKTCLSLLR---ALAGSDSVKSTIVEKGGLDKIITLALRHSD 342 (461)
T ss_pred HHHHccCHHHHHHHHhh------------hchhhHHHHHHHHHHHHH---HHhCCCchHHHHHHhcChHHHHHHHHHcCC
Confidence 45566676777777655 233445555555444433 244455554444 66666654 466
Q ss_pred ccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCCcchHHHHHHHHHHHHhcc
Q 006622 127 GTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKL 189 (638)
Q Consensus 127 ~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~s~~~e~Al~LL~~LL~~~ 189 (638)
++-++++.+-|++-++--+|+-...+++.|+-..+.-+|+..|....-...|-.++-.++.+.
T Consensus 343 ~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs 405 (461)
T KOG4199|consen 343 DPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS 405 (461)
T ss_pred ChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh
Confidence 788889999999888667899999999999877765666654554444556667777777765
No 50
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.51 E-value=3.4e+02 Score=30.44 Aligned_cols=76 Identities=11% Similarity=0.270 Sum_probs=55.0
Q ss_pred cchhHHHHhhhcccc---cchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCCcchHHHHHHHHHHHHhcc
Q 006622 113 SKVPPILELMLKESG---TSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKL 189 (638)
Q Consensus 113 ~rIP~l~~~l~~~~~---~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~s~~~e~Al~LL~~LL~~~ 189 (638)
+-+..+++++..+.+ .+.+..|+..|-++| .+..-...+++.|+.+.+-..+....+...-.++++.++..|-=|.
T Consensus 283 GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~ 361 (461)
T KOG4199|consen 283 GGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRS 361 (461)
T ss_pred cCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcC
Confidence 456778888876654 456789999999997 6888888889999999874444333445555677887777665554
No 51
>PF07962 Swi3: Replication Fork Protection Component Swi3; InterPro: IPR012923 Replication fork pausing is required to initiate recombination events. More specifically, Swi1 is required for recombination near the mat1 locus. Swi3 has been found to co-purify with Swi1. Together they define a fork protection complex that coordinates leading- and lagging-strand synthesis and stabilises stalled replication forks []. This complex is required for accurate replication, fork protection and replication checkpoint signalling [, ].; GO: 0006974 response to DNA damage stimulus, 0007049 cell cycle, 0048478 replication fork protection, 0005634 nucleus
Probab=25.48 E-value=1.1e+02 Score=26.81 Aligned_cols=49 Identities=29% Similarity=0.556 Sum_probs=32.3
Q ss_pred CCchhHHHHHHHHHHHHhhcCCCCCCCCcccccHHHHHHHhHHhHhhh-cch--HHHhh
Q 006622 581 FDSNSVNSLSRLFARSLASWGQGAPYGKKEDMDLLEIVTAGYSRWAHR-FPH--IKEAV 636 (638)
Q Consensus 581 ~~~~~l~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~r-~p~--~~~~~ 636 (638)
++++.|..|.+.+ +.+.--+.+ .|..|| ..+..=|..|+|+ ||. |++.|
T Consensus 8 ~~~~Glp~l~~~~-k~~k~kgkg-----hE~~dL-~~ll~~Yq~W~h~LfPk~~F~d~i 59 (83)
T PF07962_consen 8 LSPKGLPYLRKNF-KKFKFKGKG-----HEYEDL-RRLLQFYQLWAHRLFPKASFEDFI 59 (83)
T ss_pred cCCCCHHHHHHHH-HHcCcCCCC-----CHHHHH-HHHHHHHHHHHHhcCCCCCHHHHH
Confidence 6778888888877 555544333 344454 5566779999997 784 45544
No 52
>PF02262 Cbl_N: CBL proto-oncogene N-terminal domain 1; InterPro: IPR003153 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the N-terminal four-helical bundle domain.; GO: 0004871 signal transducer activity, 0007166 cell surface receptor linked signaling pathway, 0005634 nucleus; PDB: 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B 1B47_C 3BUO_D ....
Probab=25.33 E-value=3.8e+02 Score=25.79 Aligned_cols=99 Identities=20% Similarity=0.277 Sum_probs=54.1
Q ss_pred HHHhcCCcccc--cCcccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCCcc
Q 006622 96 LAAFCRVPEIA--SSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSR 173 (638)
Q Consensus 96 LaaF~~~pe~A--~~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~s~ 173 (638)
+...|.+|.+. .+| |.|.+++ -|.||.|..|++ ..+|.......+ += -+|+. .+=..
T Consensus 20 l~~lC~~prLnLknSP------P~l~diL---------pdt~q~L~~I~~-~~~~~~~~l~~~--~y--l~i~l-~NL~~ 78 (130)
T PF02262_consen 20 LVKLCQDPRLNLKNSP------PYLLDIL---------PDTYQHLRLIFS-RYEDDMEPLGEN--DY--LRIFL-ANLEA 78 (130)
T ss_dssp HHHHHT-GGG--TSSS------S-HHHHH---------HHHHHHHHHHHH-HCTSCHHHHHHH--HH--HHHHH-HHHHH
T ss_pred HHHHhCCCcccCCCCC------CcHHHhh---------HHHHHHHHHHHH-Hccccccccccc--hH--HHHHH-HHHHH
Confidence 45678877776 344 6666665 577999999973 444433222221 10 11221 01111
Q ss_pred hHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhhhhhhhh
Q 006622 174 LMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALK 221 (638)
Q Consensus 174 ~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~~~~~K 221 (638)
-..++.+|+ +-+.+.+. +..+...+=++++|.-|...+.+.|
T Consensus 79 K~kq~~~Lf-----K~~~e~~f-~e~S~~RR~LtKLsLiFSHMlaELk 120 (130)
T PF02262_consen 79 KCKQAAKLF-----KEAKEKMF-DEGSRYRRQLTKLSLIFSHMLAELK 120 (130)
T ss_dssp HHHHHHHHH-----HHHGGGGG-STTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HhCHHHHH-hhchHHHHHHHHHHHHHHHHHHHHH
Confidence 123555555 44456665 4456677779999999999877765
No 53
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=24.59 E-value=9.9e+02 Score=26.51 Aligned_cols=186 Identities=15% Similarity=0.099 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhcCCccccc--CcccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchh-----hHHhhcCchH
Q 006622 87 AYLQLSVTVLAAFCRVPEIAS--SEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGV-----TTLYESGGMK 159 (638)
Q Consensus 87 ~~~~LavsvLaaF~~~pe~A~--~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~-----~~l~~~g~v~ 159 (638)
.-..=.+.+|+++|+.+++.. .+.+++++-.. +...........++++|+.+........ ....++..++
T Consensus 17 ~~~~~~L~~l~~ls~~~~i~~~~~~~ll~kl~~~---~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~ 93 (415)
T PF12460_consen 17 SNYERILEALAALSTSPQILETLSIRLLNKLSIV---CQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVP 93 (415)
T ss_pred hHHHHHHHHHHHHHCChhHHHHHHHHHHHHHHHH---hcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHH
Confidence 444456889999999888762 33333332211 1111233334667777766642222222 1223334677
Q ss_pred HHHHHHhcccCCcc-hHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhh---------hhh---hhhHHHHH
Q 006622 160 VLAFQMSTFADGSR-LMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAV---------LHN---ALKFESLH 226 (638)
Q Consensus 160 ~l~~~i~~~~~~s~-~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~---------~~~---~~Kfe~l~ 226 (638)
.+...+......+. ..+..+.++..++.... .... .+.-..++..+-.-|.. ... +..-....
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv-~~l~---~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (415)
T PF12460_consen 94 RLFELALQASDQSSDLDDRVLELLSRLINLIV-RSLS---PEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVI 169 (415)
T ss_pred HHHHHHHhhcccccccchHHHHHHHHHHHHHH-HhCC---HHHHHHHHHHHHHHHccccccCCCCccccccccccccHHH
Confidence 76554433211111 23455555555555431 1111 11122234444444441 111 12334455
Q ss_pred HHHHhhhhhhhhhHHHHhhcCCCcchhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhcC
Q 006622 227 LLTAVLSSNYSALLHEALRVMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKG 288 (638)
Q Consensus 227 ~L~~lL~~~~~~~~~~~l~~~~~~~W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~G 288 (638)
++..++.... + ++.-. -...+...+.....+--.+..|..++++.+.++..+.
T Consensus 170 l~~~il~~l~-~-------~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~ 222 (415)
T PF12460_consen 170 LFSAILCSLR-K-------DVSLP-DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWP 222 (415)
T ss_pred HHHHHHHcCC-c-------ccCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCC
Confidence 5666665551 1 11111 2223445555554444448899999998888887753
No 54
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=24.27 E-value=1.5e+03 Score=28.52 Aligned_cols=202 Identities=21% Similarity=0.227 Sum_probs=0.0
Q ss_pred chhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhcC-CcccccCcccccch-hHHHHhhhcccc----cchHHHH
Q 006622 61 PRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAAFCR-VPEIASSEDMVSKV-PPILELMLKESG----TSILEEC 134 (638)
Q Consensus 61 ~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLaaF~~-~pe~A~~~~~v~rI-P~l~~~l~~~~~----~~~~~d~ 134 (638)
|+|||=|+.=. ++. ..+-+.|-+-.|+.-|+ |||.+ ..|-++| |.+.++..+.++ ...+.|+
T Consensus 529 p~ild~L~qla-s~~---------s~evl~llmE~Ls~vv~~dpef~--as~~skI~P~~i~lF~k~s~DP~V~~~~qd~ 596 (1005)
T KOG2274|consen 529 PMILDGLLQLA-SKS---------SDEVLVLLMEALSSVVKLDPEFA--ASMESKICPLTINLFLKYSEDPQVASLAQDL 596 (1005)
T ss_pred hHHHHHHHHHc-ccc---------cHHHHHHHHHHHHHHhccChhhh--hhhhcchhHHHHHHHHHhcCCchHHHHHHHH
Q ss_pred HHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCC----cchHHHHHHHHHHHHhccccccccccchhhHHHHHHHHH
Q 006622 135 YEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADG----SRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVA 210 (638)
Q Consensus 135 ~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~----s~~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA 210 (638)
++-|.-++.-.+.=++.++-. .-.+.. .++ +--...|+.+|-+.+... +..+.+.- .-..+++++
T Consensus 597 f~el~q~~~~~g~m~e~~iPs------lisil~-~~~~~~~~~l~~~aidvLttvvr~t-p~pL~~~l---~~~~FpaVa 665 (1005)
T KOG2274|consen 597 FEELLQIAANYGPMQERLIPS------LISVLQ-LNADKAPAGLCAIAIDVLTTVLRNT-PSPLPNLL---ICYAFPAVA 665 (1005)
T ss_pred HHHHHHHHHhhcchHHHHHHH------HHHHHc-CcccccCchhhHHHHHHHHHHHhcC-CCCccHHH---HHHHhHHhH
Q ss_pred HHHhhhhhhhhHHH-HHHHHHhhhhhhhhhHHHHhhcCCCcchhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhcC
Q 006622 211 REFAVLHNALKFES-LHLLTAVLSSNYSALLHEALRVMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKG 288 (638)
Q Consensus 211 ~~F~~~~~~~Kfe~-l~~L~~lL~~~~~~~~~~~l~~~~~~~W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~G 288 (638)
+--.+..+..-++. =+.|.++++.. +-+.....+....-.-+|..-+..+|.-+.+..----+=.|...++.++|
T Consensus 666 k~tlHsdD~~tlQ~~~EcLra~Is~~---~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~ 741 (1005)
T KOG2274|consen 666 KITLHSDDHETLQNATECLRALISVT---LEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHAS 741 (1005)
T ss_pred hheeecCChHHHHhHHHHHHHHHhcC---HHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHH
No 55
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=24.02 E-value=53 Score=34.53 Aligned_cols=85 Identities=24% Similarity=0.222 Sum_probs=54.2
Q ss_pred HhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHH-HHHHHHHhcC--CcccccCcccccchhHHHHhhhcccccchHHH
Q 006622 57 DAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQL-SVTVLAAFCR--VPEIASSEDMVSKVPPILELMLKESGTSILEE 133 (638)
Q Consensus 57 ~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~L-avsvLaaF~~--~pe~A~~~~~v~rIP~l~~~l~~~~~~~~~~d 133 (638)
+|-=+=||.|-|.|.+++. ...|+.| ++.|++++-. +|++-.-=.-++-||+.+.||..+++.+- --
T Consensus 139 ~AhiplflypfLntss~~~---------~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSk-tv 208 (315)
T COG5209 139 DAHIPLFLYPFLNTSSSNS---------KFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSK-TV 208 (315)
T ss_pred ecccceeeHhhhhccccCC---------ccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHH-HH
Confidence 3444568899999874433 5677766 6889999985 66665444445678999999988877542 22
Q ss_pred HHHHHHHHHhcccchhhHH
Q 006622 134 CYEFLYLVTNATGDGVTTL 152 (638)
Q Consensus 134 ~~~~L~~ia~s~~~G~~~l 152 (638)
+.-++..|- .-..|-+..
T Consensus 209 aifI~qkil-~dDvGLqYi 226 (315)
T COG5209 209 AIFIFQKIL-GDDVGLQYI 226 (315)
T ss_pred HHHHHHHHh-ccchhHHHH
Confidence 333344443 344554443
No 56
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=22.75 E-value=3.4e+02 Score=32.96 Aligned_cols=117 Identities=15% Similarity=0.099 Sum_probs=72.2
Q ss_pred HhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhcCCcccccCcccccchhHHHHhhhcccc-----cchH
Q 006622 57 DAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAAFCRVPEIASSEDMVSKVPPILELMLKESG-----TSIL 131 (638)
Q Consensus 57 ~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLaaF~~~pe~A~~~~~v~rIP~l~~~l~~~~~-----~~~~ 131 (638)
.-=|.+||-+||+++- .++-.+. -+.|--+++++..-..=. -.-||-|++.+..+.. +.++
T Consensus 564 kekgl~~l~~ll~~~~------------~~vv~s~-a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv 629 (717)
T KOG1048|consen 564 KEKGLPPLVELLRNDD------------SDVVRSA-AGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTV 629 (717)
T ss_pred hccCccHHHHHHhcCC------------chHHHHH-HHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHH
Confidence 3457799999999961 2333333 345555666555431111 2346777777754332 4446
Q ss_pred HHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCCcchHHHHHHHHHHHHhc
Q 006622 132 EECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSK 188 (638)
Q Consensus 132 ~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~s~~~e~Al~LL~~LL~~ 188 (638)
.-++-+|..|.+....+++.+.+.++++++ -.|..-....-..+.|=.+|..|...
T Consensus 630 ~~vc~tl~niv~~~~~nAkdl~~~~g~~kL-~~I~~s~~S~k~~kaAs~vL~~lW~y 685 (717)
T KOG1048|consen 630 RAVCHTLNNIVRKNVLNAKDLLEIKGIPKL-RLISKSQHSPKEFKAASSVLDVLWQY 685 (717)
T ss_pred HHHHHhHHHHHHHhHHHHHHHHhccChHHH-HHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 777777877755899999999999999997 44432112223355666666666554
No 57
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=21.34 E-value=1e+03 Score=25.56 Aligned_cols=184 Identities=20% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHhcccC-CchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHH
Q 006622 18 LDDCLKLLKGE-RDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVL 96 (638)
Q Consensus 18 l~~cl~lLk~~-~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvL 96 (638)
++.|++-+|.. ..|+.++.-++--=.+.-+..+....+|+.+.+ +|.|.++.+ ..........--+++|+
T Consensus 88 ~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~-~L~~~l~d~--------s~~~~~R~~~~~aLai~ 158 (309)
T PF05004_consen 88 LDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKP-VLKRILTDS--------SASPKARAACLEALAIC 158 (309)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHH-HHHHHHhCC--------ccchHHHHHHHHHHHHH
Q ss_pred HHhcCCcccccCcccccchhHHHHhhhccccc----------chHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHh
Q 006622 97 AAFCRVPEIASSEDMVSKVPPILELMLKESGT----------SILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMS 166 (638)
Q Consensus 97 aaF~~~pe~A~~~~~v~rIP~l~~~l~~~~~~----------~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~ 166 (638)
+-+|....-....-|-.-=-++.....++++. .++.-|++.-..+++-.+.+.-.-.-...++++..++.
T Consensus 159 ~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~ 238 (309)
T PF05004_consen 159 TFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLD 238 (309)
T ss_pred HHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhc
Q ss_pred cccCCcchH--HHHHHHHHHHHhccccccccccchhhHHHHHHHHHHH
Q 006622 167 TFADGSRLM--ELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVARE 212 (638)
Q Consensus 167 ~~~~~s~~~--e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~ 212 (638)
. .+-..+. -+++.+|.-+-.....+... ++...+...+..||.+
T Consensus 239 s-~d~~VRiAAGEaiAll~E~~~~~~~~~~~-~~~~~l~~~l~~La~d 284 (309)
T PF05004_consen 239 S-DDVDVRIAAGEAIALLYELARDHEEDFLY-EDMEELLEQLRELATD 284 (309)
T ss_pred C-CCHHHHHHHHHHHHHHHHHhhcccccccc-cCHHHHHHHHHHHHHh
No 58
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.93 E-value=6.9e+02 Score=28.05 Aligned_cols=167 Identities=19% Similarity=0.150 Sum_probs=78.6
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCchhHHHHH-HHHHHhhcCchhhHHHHHhhhhhhhhcccc---
Q 006622 376 GGLIDDNTFMKVMNGLNETIGVVLEYLQDAKEHERKKGNDLLASVR-LVGSYLAETPHACKEKVRELLQHMLSIEGE--- 451 (638)
Q Consensus 376 ~~~L~~~~~~k~~~~L~Ea~~~VL~~L~~~~~~~~~k~~~vlAsvR-vLgawLAEe~salk~~v~~LLPfll~~~~~--- 451 (638)
++++-..=+..+.+.|+=||+--+-.+|..++--|+.++.++-... -.|+-.=|-+.++. ..|.+-++...+
T Consensus 185 dgp~a~tFLNsvlnqLnWafsEFi~~vqEiQ~~aqr~E~~~~e~~Qlk~C~~cFeLsvsL~----RvLEm~it~~Peifl 260 (489)
T KOG4692|consen 185 DGPLASTFLNSVLNQLNWAFSEFIVSVQEIQEKAQRMENTLFEPFQLKKCCVCFELSVSLA----RVLEMCITAMPEIFL 260 (489)
T ss_pred cCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccCHHHHhHhhhhHHHHHHHH----HHHHHHHHhhhHHHh
Confidence 3457777778899999999998888888766555443221111110 01222222222221 223333333322
Q ss_pred CCCCCchhHHHHhhhhcccccchhhhhHhhccCChHHHHHHHHHHhcCCCccccCchhHHHHHHHHHHHHhcCCCcc---
Q 006622 452 DEPSPFYSVFFLLPMLCQTTMEIEGCKDLVSSGMYKAVAECLIKLIGPGRVTVEDDGCIFLACDTILNLLLKKEQVR--- 528 (638)
Q Consensus 452 ~~~~~~d~lrfLLP~Lc~lT~e~~gr~iL~s~~~~~~L~~~l~~~~~~~~~~~~~~~~l~~aC~illNl~v~~~~~~--- 528 (638)
|+.+|- .+.||--+||+-- .++-.-..+-.+.++...+..+.-+-++.-+-+..+-||++|+++-+++..
T Consensus 261 d~trpn--s~~Ll~ri~qlln-----qvlsrVt~e~~lf~rvv~~~~~~le~V~hypil~a~~GIll~Ll~~~~~S~~r~ 333 (489)
T KOG4692|consen 261 DGTRPN--SRRLLERILQLLN-----QVLSRVTDEFFLFVRVVRRQGQPLEKVSHYPILAALVGILLNLLEASEDSKPRQ 333 (489)
T ss_pred cCCCCc--HHHHHHHHHHHHH-----HHHHhhccccchhHHHHHhhcCChhhhcccchHHHHHHHHHHHHHhCcccCccc
Confidence 222332 2222222222110 011111112223444444444443333334677788999999999877643
Q ss_pred --------cCCCcccHH--HHHHHHHhhccCCCCc
Q 006622 529 --------FPMDESTSI--HLLKALAYWTEDSNDP 553 (638)
Q Consensus 529 --------i~~~~~~F~--~ll~~l~~~~~~~~~~ 553 (638)
.-+.+++|. .+--.|.+..|...+|
T Consensus 334 Q~~~~~~~a~l~dP~fq~~~~~ylLg~~~pdpp~p 368 (489)
T KOG4692|consen 334 QHDVIGLFASLDDPDFQYYGFQYLLGYNWPDPPDP 368 (489)
T ss_pred chhhhhhheeccCcchHHHHHHHHHhcCCCCCCCc
Confidence 123355553 4444555544544333
No 59
>PF03819 MazG: MazG nucleotide pyrophosphohydrolase domain; InterPro: IPR004518 This domain is found in a group of prokaryotic proteins which includes Escherichia coli MazG. The domain is about 100 amino acid residues in length and contains four conserved negatively charged residues that probably form an active site or metal binding site.; PDB: 1VMG_A 2YXH_B 2OIE_B 2OIG_C 2Q4P_A 2A3Q_B 2Q9L_C 2Q5Z_B 2Q73_A 3CRC_B ....
Probab=20.75 E-value=1.5e+02 Score=24.81 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCCCcccccHHHHHHHhHHhHhhhcchH
Q 006622 584 NSVNSLSRLFARSLASWGQGAPYGKKEDMDLLEIVTAGYSRWAHRFPHI 632 (638)
Q Consensus 584 ~~l~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~r~p~~ 632 (638)
+.-+-+.+++...+.-+..... .-..|+-+++-.=+..+.+||||+
T Consensus 28 ~l~eElgDvl~~l~~la~~~~~---~~~idle~~~~~~~~K~~~R~p~~ 73 (74)
T PF03819_consen 28 NLEEELGDVLFYLLQLARILEE---RLGIDLEEALERKMEKLERRYPHV 73 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---HTTSHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhH---cCCCCHHHHHHHHHHHHhccCCCC
Confidence 3445667777666666642110 134599999999999999999996
No 60
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=20.64 E-value=2.8e+02 Score=28.43 Aligned_cols=92 Identities=16% Similarity=0.208 Sum_probs=50.9
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCC-CCCCCcchHHHHHHHHHHHHHhcC-CcccccCcccc
Q 006622 35 AGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGIN-SGNSSENRDAYLQLSVTVLAAFCR-VPEIASSEDMV 112 (638)
Q Consensus 35 vgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~-~~~~~~~~~~~~~LavsvLaaF~~-~pe~A~~~~~v 112 (638)
+++=+++++.+.+|- .|.||..+|.-...+... ..+++...+...+.|-+ .+.+|+ +|+ .-++|+
T Consensus 57 ~~~rLl~~lw~~~~r----------~f~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s-~~~ic~~~p~--~g~~ll 123 (234)
T PF12530_consen 57 VALRLLTLLWKANDR----------HFPFLQPLLLLLILRIPSSFSSKDEFWECLISIAAS-IRDICCSRPD--HGVDLL 123 (234)
T ss_pred HHHHHHHHHHHhCch----------HHHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHH-HHHHHHhChh--hHHHHH
Confidence 555555555554331 126777766541000000 00233455556666644 456664 998 345555
Q ss_pred cchhHHHHhhhcccccchHHHHHHHHHHHH
Q 006622 113 SKVPPILELMLKESGTSILEECYEFLYLVT 142 (638)
Q Consensus 113 ~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia 142 (638)
+.+.+++.+.+++.+...++|.|..++
T Consensus 124 ---~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 124 ---PLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred ---HHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 445555535566777788999888886
No 61
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=20.48 E-value=1.6e+02 Score=28.31 Aligned_cols=55 Identities=18% Similarity=0.370 Sum_probs=38.9
Q ss_pred cchHHHHHHHHHHHHhcccchhhHHhh-cCchHHHHHHHhcccCCcchHHHHHHHHHHH
Q 006622 128 TSILEECYEFLYLVTNATGDGVTTLYE-SGGMKVLAFQMSTFADGSRLMELAIRLLQLM 185 (638)
Q Consensus 128 ~~~~~d~~~~L~~ia~s~~~G~~~l~~-~g~v~~l~~~i~~~~~~s~~~e~Al~LL~~L 185 (638)
.....+|+.||-++. .++.|.+.+++ .+.+..++.-+. +.+..-...|++||..+
T Consensus 130 ~~~~~~~l~Clkal~-n~~~G~~~v~~~~~~v~~i~~~L~--s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 130 IDIEHECLRCLKALM-NTKYGLEAVLSHPDSVNLIALSLD--SPNIKTRKLALEILAAL 185 (187)
T ss_dssp HHHHHHHHHHHHHHT-SSHHHHHHHHCSSSHHHHHHHT----TTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-ccHHHHHHHHcCcHHHHHHHHHHC--CCCHHHHHHHHHHHHHH
Confidence 345678999999996 79999999985 667777643332 45555667888887654
No 62
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=20.18 E-value=5.4e+02 Score=28.60 Aligned_cols=137 Identities=20% Similarity=0.165 Sum_probs=80.7
Q ss_pred hhhhhhccccCCCCCchhHHHHhhhhcccccchhhhhHhhccCChHHHHHHHHHHhcCCCccccCchhHHHHHHHHHHHH
Q 006622 442 LQHMLSIEGEDEPSPFYSVFFLLPMLCQTTMEIEGCKDLVSSGMYKAVAECLIKLIGPGRVTVEDDGCIFLACDTILNLL 521 (638)
Q Consensus 442 LPfll~~~~~~~~~~~d~lrfLLP~Lc~lT~e~~gr~iL~s~~~~~~L~~~l~~~~~~~~~~~~~~~~l~~aC~illNl~ 521 (638)
+|.++..-.+.....-......|++|+.++.+..-.+.++ ..+.+-+...+.++. +..-.+..|.++.+++
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~-----~~ll~kl~~~~~~~~----~~~~~~~il~tl~~~~ 71 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQILETLS-----IRLLNKLSIVCQSES----SSDYCHAILSTLQSLL 71 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHH-----HHHHHHHHHHhcCCC----ChHHHHHHHHHHHHHH
Confidence 3556665554433333577789999999999988776665 233443444444432 3356678888888888
Q ss_pred hcCCCcccCCCcccHHH--HHHHHHhhccC----CC--CcchHHHHHhHHHHhcccCChHHhhcCCCCCchhHHHHHHHH
Q 006622 522 LKKEQVRFPMDESTSIH--LLKALAYWTED----SN--DPTIIMMASCICALLFDSTSEEALVNNTYFDSNSVNSLSRLF 593 (638)
Q Consensus 522 v~~~~~~i~~~~~~F~~--ll~~l~~~~~~----~~--~~~~~~laa~~~tl~l~~~~e~~l~~~~~~~~~~l~~~~~l~ 593 (638)
-+..+-.-..+...+.+ +.+-+.++.-. .. +...+-++++++.++.-.-+++- ..+.++.+++++
T Consensus 72 ~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~-------q~~~~~~~~~lf 144 (415)
T PF12460_consen 72 EKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEK-------QQEILDELYSLF 144 (415)
T ss_pred HhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHH-------HHHHHHHHHHHH
Confidence 88665420123444444 44444444433 22 25566777888877765555442 234466666666
Q ss_pred H
Q 006622 594 A 594 (638)
Q Consensus 594 ~ 594 (638)
.
T Consensus 145 ~ 145 (415)
T PF12460_consen 145 L 145 (415)
T ss_pred c
Confidence 5
Done!