Query 006622
Match_columns 638
No_of_seqs 94 out of 103
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 04:31:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006622.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006622hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hxt_A De novo protein OR329; 97.4 0.0078 2.7E-07 57.3 18.5 236 17-287 3-243 (252)
2 4db6_A Armadillo repeat protei 97.0 0.016 5.6E-07 54.3 15.3 157 13-188 9-168 (210)
3 4db8_A Armadillo-repeat protei 97.0 0.012 4.2E-07 56.6 14.7 198 12-235 8-211 (252)
4 2z6h_A Catenin beta-1, beta-ca 96.9 0.14 4.9E-06 57.1 24.7 410 17-524 99-529 (644)
5 4db8_A Armadillo-repeat protei 96.8 0.015 5.2E-07 55.9 13.4 154 17-187 55-209 (252)
6 1xqr_A HSPBP1 protein; armadil 96.7 0.098 3.3E-06 53.9 19.6 195 15-235 27-240 (296)
7 4b8j_A Importin subunit alpha- 96.6 0.048 1.6E-06 58.9 17.1 201 14-235 72-275 (528)
8 3tpo_A Importin subunit alpha- 96.6 0.057 2E-06 59.0 17.8 207 15-235 75-282 (529)
9 2z6h_A Catenin beta-1, beta-ca 96.6 1 3.4E-05 50.2 28.0 414 15-523 13-446 (644)
10 4hxt_A De novo protein OR329; 96.6 0.043 1.5E-06 52.1 14.6 194 17-235 45-243 (252)
11 3ul1_B Importin subunit alpha- 96.3 0.03 1E-06 61.1 13.5 204 15-234 56-262 (510)
12 4db6_A Armadillo repeat protei 96.3 0.047 1.6E-06 51.1 12.7 150 17-185 55-207 (210)
13 2z6g_A B-catenin; FULL-length, 96.2 0.71 2.4E-05 53.3 24.9 194 17-234 235-429 (780)
14 2jdq_A Importin alpha-1 subuni 96.2 0.67 2.3E-05 47.9 22.3 237 17-285 108-347 (450)
15 1jdh_A Beta-catenin; beta-cate 96.2 0.43 1.5E-05 50.6 21.2 152 17-186 60-214 (529)
16 3nmw_A APC variant protein; AR 96.0 0.062 2.1E-06 56.7 13.4 196 18-235 129-336 (354)
17 1xqr_A HSPBP1 protein; armadil 95.7 0.24 8.1E-06 51.0 15.8 155 17-189 82-240 (296)
18 1wa5_B Importin alpha subunit; 95.6 0.95 3.3E-05 48.8 21.2 237 17-286 174-413 (530)
19 1xm9_A Plakophilin 1; armadill 95.6 0.046 1.6E-06 58.9 10.5 131 17-165 3-136 (457)
20 3grl_A General vesicular trans 95.5 0.21 7.2E-06 57.0 15.9 254 15-284 121-393 (651)
21 1wa5_B Importin alpha subunit; 95.5 0.33 1.1E-05 52.5 16.9 199 15-234 86-287 (530)
22 2jdq_A Importin alpha-1 subuni 95.4 0.071 2.4E-06 55.4 11.1 214 1-234 3-222 (450)
23 4b8j_A Importin subunit alpha- 95.4 0.51 1.8E-05 50.7 17.9 236 16-284 117-357 (528)
24 1jdh_A Beta-catenin; beta-cate 95.4 0.13 4.4E-06 54.7 13.0 232 17-283 102-337 (529)
25 3nmz_A APC variant protein; pr 95.3 0.19 6.6E-06 54.9 14.5 153 18-187 245-408 (458)
26 3now_A UNC-45 protein, SD10334 94.9 0.96 3.3E-05 53.0 19.6 239 17-285 496-737 (810)
27 3l6x_A Catenin delta-1; cateni 94.5 0.14 4.8E-06 57.9 10.9 144 6-165 38-183 (584)
28 3tt9_A Plakophilin-2; cell adh 93.9 0.17 5.7E-06 50.7 8.9 134 12-161 4-140 (233)
29 2z6g_A B-catenin; FULL-length, 93.8 1.7 5.8E-05 50.1 18.3 139 14-165 397-539 (780)
30 3tpo_A Importin subunit alpha- 93.6 3.2 0.00011 45.1 19.2 199 21-235 167-366 (529)
31 1xm9_A Plakophilin 1; armadill 93.6 0.55 1.9E-05 50.5 12.8 156 16-187 44-220 (457)
32 3ul1_B Importin subunit alpha- 92.4 1 3.6E-05 48.9 13.1 232 18-274 145-377 (510)
33 3now_A UNC-45 protein, SD10334 91.6 4.9 0.00017 47.1 18.0 237 18-285 379-652 (810)
34 3nmw_A APC variant protein; AR 91.5 6 0.0002 41.5 17.1 180 33-233 101-292 (354)
35 3tt9_A Plakophilin-2; cell adh 91.1 1.4 4.6E-05 44.0 11.1 157 17-188 53-230 (233)
36 3l6x_A Catenin delta-1; cateni 90.6 1.9 6.6E-05 48.6 13.0 159 17-188 91-271 (584)
37 3nmz_A APC variant protein; pr 89.9 7.5 0.00026 42.4 16.6 179 33-233 217-408 (458)
38 2qk2_A LP04448P; mini spindles 85.8 25 0.00086 33.5 16.6 178 88-289 31-209 (242)
39 3opb_A SWI5-dependent HO expre 83.0 78 0.0027 37.0 21.0 238 23-287 464-730 (778)
40 2qk1_A Protein STU2; STU2P, XM 76.9 59 0.002 31.9 16.5 206 55-290 13-225 (249)
41 3grl_A General vesicular trans 72.9 28 0.00095 39.8 12.8 213 5-235 10-243 (651)
42 3opb_A SWI5-dependent HO expre 69.7 22 0.00076 41.4 11.4 160 115-285 459-635 (778)
43 2bpt_A Importin beta-1 subunit 64.5 1.8E+02 0.0062 32.4 29.9 236 23-291 376-633 (861)
44 2bpt_A Importin beta-1 subunit 59.2 2.2E+02 0.0076 31.6 16.8 184 88-290 516-716 (861)
45 2qk2_A LP04448P; mini spindles 58.0 1.2E+02 0.0042 28.6 12.7 160 105-289 6-166 (242)
46 1u6g_C TIP120 protein, CAND1; 52.8 3.5E+02 0.012 32.0 31.4 233 15-289 5-247 (1230)
47 1qgr_A Protein (importin beta 39.1 4.4E+02 0.015 29.2 16.1 183 88-289 580-778 (876)
48 2vgl_B AP-2 complex subunit be 38.6 1.4E+02 0.0047 32.8 10.7 77 200-287 235-313 (591)
49 1u6g_C TIP120 protein, CAND1; 37.1 2.7E+02 0.0091 33.1 13.5 232 18-290 50-289 (1230)
50 4fdd_A Transportin-1; heat rep 36.4 5.1E+02 0.017 29.2 34.7 176 89-289 338-516 (852)
51 3dad_A FH1/FH2 domain-containi 35.6 3.7E+02 0.013 28.2 12.7 185 91-285 137-335 (339)
52 2of3_A ZYG-9; multifunctional 30.7 1.4E+02 0.0048 30.2 8.4 99 174-290 103-201 (266)
53 4gmo_A Putative uncharacterize 28.7 2.8E+02 0.0096 31.1 11.3 130 20-166 38-192 (684)
54 3b2a_A TON_1937, putative unch 28.3 4.1E+02 0.014 26.9 11.0 147 111-286 73-219 (265)
55 3b2a_A TON_1937, putative unch 27.5 5E+02 0.017 26.3 12.4 163 17-190 34-221 (265)
56 1b3u_A Protein (protein phosph 21.7 6.9E+02 0.024 25.9 19.2 189 11-234 5-194 (588)
57 1qgr_A Protein (importin beta 21.4 8.5E+02 0.029 26.9 22.6 102 176-291 582-685 (876)
No 1
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.45 E-value=0.0078 Score=57.33 Aligned_cols=236 Identities=17% Similarity=0.212 Sum_probs=158.3
Q ss_pred cHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHH
Q 006622 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVL 96 (638)
Q Consensus 17 ~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvL 96 (638)
.+...+++|++.+.+-|..++..+.++....+ +..+.+.++=+.+.|-++|+++ ...-+.-|+..|
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~-------------~~~v~~~a~~~L 68 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPA-SAIKAIVDAGGVEVLVKLLTST-------------DSEVQKEAARAL 68 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCS-------------CHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHHHHHHhCC-------------CHHHHHHHHHHH
Confidence 47788999999988889999999999998644 6777777776667788888764 145677888889
Q ss_pred HHhcCC-cccccCcccc--cchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCCcc
Q 006622 97 AAFCRV-PEIASSEDMV--SKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSR 173 (638)
Q Consensus 97 aaF~~~-pe~A~~~~~v--~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~s~ 173 (638)
..++.. |+.. ..++ +-||.|++.+.. ++..+...|+.+|..++...++..+.+.+.|+++.+...+. .+...
T Consensus 69 ~~l~~~~~~~~--~~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~--~~~~~ 143 (252)
T 4hxt_A 69 ANIASGPDEAI--KAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT--STDSE 143 (252)
T ss_dssp HHHTTSCHHHH--HHHHHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT--CSCHH
T ss_pred HHHHcCChHHH--HHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc--CCCHH
Confidence 999875 5543 2222 458999999875 44566799999999996457888999999999999855443 23334
Q ss_pred hHHHHHHHHHHHHhccccccccccchhhH--HHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhhhHHHHhhcCCCcc
Q 006622 174 LMELAIRLLQLMLSKLSLEIITNDYLSEL--STIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSK 251 (638)
Q Consensus 174 ~~e~Al~LL~~LL~~~~~~~~~~~~~~~l--~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~~~~~~~~~~l~~~~~~~ 251 (638)
-...|+..|..+..... +. ...+ ...++.+..-+.......+..++..|..+.... +......
T Consensus 144 ~~~~a~~~L~~l~~~~~-~~-----~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l-------- 208 (252)
T 4hxt_A 144 VQKEAARALANIASGPD-EA-----IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-TSAIKAI-------- 208 (252)
T ss_dssp HHHHHHHHHHHHTTSCH-HH-----HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-HHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCH-HH-----HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHHHHH--------
Confidence 45677777777655321 11 0111 124555666555666688888899998887643 1111110
Q ss_pred hhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhc
Q 006622 252 WSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIK 287 (638)
Q Consensus 252 W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~ 287 (638)
....+..-|..++++. .+.-|..|+.....+....
T Consensus 209 ~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 209 VDAGGVEVLQKLLTST-DSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHTC
T ss_pred HHCCCHHHHHHHHCCC-cHHHHHHHHHHHHHHHcCC
Confidence 0112335566667654 4566777777777666544
No 2
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.01 E-value=0.016 Score=54.25 Aligned_cols=157 Identities=16% Similarity=0.254 Sum_probs=112.3
Q ss_pred CCCccHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHH
Q 006622 13 APSPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLS 92 (638)
Q Consensus 13 ~~~~~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~La 92 (638)
...........+|++.+.+-|..++..+.++... +.+..+.+.++=+.+.|-++|+++ ....+.-|
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~-------------~~~v~~~a 74 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASG-GNEQIQAVIDAGALPALVQLLSSP-------------NEQILQEA 74 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHHTTCS-------------CHHHHHHH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHcCC-------------CHHHHHHH
Confidence 3455677889999999999999999999999874 556677788776667888888763 12456678
Q ss_pred HHHHHHhcC-CcccccCccc--ccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhccc
Q 006622 93 VTVLAAFCR-VPEIASSEDM--VSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFA 169 (638)
Q Consensus 93 vsvLaaF~~-~pe~A~~~~~--v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~ 169 (638)
+..|..++. .|+.. ..+ .+-||.|++.+...+ ..+...|+.+|..++...++..+.+++.|+++.+...+..
T Consensus 75 ~~~L~~l~~~~~~~~--~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-- 149 (210)
T 4db6_A 75 LWALSNIASGGNEQI--QAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-- 149 (210)
T ss_dssp HHHHHHHTTSCHHHH--HHHHHTTCHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC--
T ss_pred HHHHHHHhcCCcHHH--HHHHHCCCHHHHHHHHcCCc-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC--
Confidence 888998885 44432 112 246899999997654 5567899999999975566667788999999998554432
Q ss_pred CCcchHHHHHHHHHHHHhc
Q 006622 170 DGSRLMELAIRLLQLMLSK 188 (638)
Q Consensus 170 ~~s~~~e~Al~LL~~LL~~ 188 (638)
+...-...|+..|..+...
T Consensus 150 ~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 150 PNEQILQEALWALSNIASG 168 (210)
T ss_dssp SCHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHHHcC
Confidence 3344567777777777664
No 3
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.00 E-value=0.012 Score=56.58 Aligned_cols=198 Identities=16% Similarity=0.228 Sum_probs=137.0
Q ss_pred CCCCccHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHH
Q 006622 12 SAPSPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQL 91 (638)
Q Consensus 12 ~~~~~~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~L 91 (638)
.+....++.-.++|++.+.+.+..++--+++++.. +.+..+.+.++=+.+.|-++|+++ ....+.-
T Consensus 8 ~~~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~-------------~~~v~~~ 73 (252)
T 4db8_A 8 HHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSP-------------NEQILQE 73 (252)
T ss_dssp CCTTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCS-------------CHHHHHH
T ss_pred ccccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCC-------------CHHHHHH
Confidence 34455699999999999988999999888887765 555677788776667888888764 1456778
Q ss_pred HHHHHHHhcC-CcccccCcccc--cchhHHHHhhhcccccchHHHHHHHHHHHHhcccchh-hHHhhcCchHHHHHHHhc
Q 006622 92 SVTVLAAFCR-VPEIASSEDMV--SKVPPILELMLKESGTSILEECYEFLYLVTNATGDGV-TTLYESGGMKVLAFQMST 167 (638)
Q Consensus 92 avsvLaaF~~-~pe~A~~~~~v--~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~-~~l~~~g~v~~l~~~i~~ 167 (638)
|+.+|..++. .|+.. ..++ +-||.|++.+... +..+...|..+|..++ ..++.. ..+.+.|+++.+...+.
T Consensus 74 a~~~L~~l~~~~~~~~--~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~~i~~L~~lL~- 148 (252)
T 4db8_A 74 ALWALSNIASGGNEQI--QAVIDAGALPALVQLLSSP-NEQILQEALWALSNIA-SGGNEQIQAVIDAGALPALVQLLS- 148 (252)
T ss_dssp HHHHHHHHTTSCHHHH--HHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHT-TSCHHHHHHHHHTTHHHHHHHGGG-
T ss_pred HHHHHHHHhcCCHHHH--HHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhh-cCCchHHHHHHHCCCHHHHHHHHh-
Confidence 8899999997 55544 2232 3589999999774 4556799999999997 567776 88999999999855443
Q ss_pred ccCCcchHHHHHHHHHHHHhccccccccccchhhH--HHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhh
Q 006622 168 FADGSRLMELAIRLLQLMLSKLSLEIITNDYLSEL--STIVTVVAREFAVLHNALKFESLHLLTAVLSSN 235 (638)
Q Consensus 168 ~~~~s~~~e~Al~LL~~LL~~~~~~~~~~~~~~~l--~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~~ 235 (638)
.+...-...|+..|..+..... +.. ..+ ...++.+..-+.......+-.++..|..+....
T Consensus 149 -~~~~~v~~~a~~~L~~l~~~~~-~~~-----~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 211 (252)
T 4db8_A 149 -SPNEQILQEALWALSNIASGGN-EQI-----QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 211 (252)
T ss_dssp -CSCHHHHHHHHHHHHHHTTSCH-HHH-----HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC
T ss_pred -CCCHHHHHHHHHHHHHHHcCCh-HHH-----HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC
Confidence 2333345677777777665331 110 011 123455555555555667788888888887543
No 4
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=96.94 E-value=0.14 Score=57.09 Aligned_cols=410 Identities=12% Similarity=0.105 Sum_probs=218.4
Q ss_pred cHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHH
Q 006622 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVL 96 (638)
Q Consensus 17 ~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvL 96 (638)
.+...+++|++.++.-++.++-.+.+++... .+..+.+.++=+.+.|-++|+++ . . ..+..++..|
T Consensus 99 ~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~---~---------~-~~~~~a~~~L 164 (644)
T 2z6h_A 99 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKT---N---------V-KFLAITTDCL 164 (644)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCC---C---------H-HHHHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcC---C---------H-HHHHHHHHHH
Confidence 5667778888877777888888888887643 22344555565567777777763 1 2 3666677778
Q ss_pred HHhcC-CcccccCcccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCCcchH
Q 006622 97 AAFCR-VPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLM 175 (638)
Q Consensus 97 aaF~~-~pe~A~~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~s~~~ 175 (638)
..++. .++....--=.+-||.|++++...+.+.....+..+|..++ ..++.+..+++.|+++.+...+. .....-.
T Consensus 165 ~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs-~~~~~~~~l~~~g~l~~L~~ll~--~~~~~~~ 241 (644)
T 2z6h_A 165 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS-VCSSNKPAIVEAGGMQALGLHLT--DPSQRLV 241 (644)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHT-TCTTHHHHHHHTTHHHHHHTTTT--CSCHHHH
T ss_pred HHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHh-cCcccHHHHHHCCCHHHHHHHHh--cCCHHHH
Confidence 87775 44432100011458999999987766666678889999997 68999999999999999854443 1223345
Q ss_pred HHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhhhHHHHhhcCCCcchhHH
Q 006622 176 ELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWSMY 255 (638)
Q Consensus 176 e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~~~~~~~~~~l~~~~~~~W~~~ 255 (638)
+.|+..|..+-... .. ......+++.|.+-+.......+-.++..|..+-... +..... .+...
T Consensus 242 ~~a~~~L~nL~~~~-~~------~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~-~~~~~~--------v~~~g 305 (644)
T 2z6h_A 242 QNCLWTLRNLSDAA-TK------QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN-YKNKMM--------VCQVG 305 (644)
T ss_dssp HHHHHHHHHHGGGC-TT------CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHH--------HHHTT
T ss_pred HHHHHHHHHHhhcc-hh------hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHH--------HHHcC
Confidence 56666666654322 11 1122355666666655555666777788887775432 111111 11112
Q ss_pred HHHHHHHHHhcCC-ChhhhhhHHHHHHHHHhhcCCCcccCCCCCCCCcCCCCccchHH-HHhhhhhHHHHHhcchhhhhh
Q 006622 256 MRVGVVAILQNRV-APAEKLQALILAESIVSIKGEEWLIGKIDLPDIQDSIPSDRCLL-LVLESSRVEIAVLLNELAYLK 333 (638)
Q Consensus 256 ir~GL~~IL~skv-~~~qR~~aL~Laa~ll~l~G~~Wl~~~~~~~~~~~~~~~~kFll-Lll~la~VEVrm~Leela~~~ 333 (638)
....|..+|++.- .+.-|.+|+.....+....+ .+.... .+++.-.++. +++-+.
T Consensus 306 ~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~------------------~~~~~q~~v~~~~~l~~--L~~lL~--- 362 (644)
T 2z6h_A 306 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQ------------------EAEMAQNAVRLHYGLPV--VVKLLH--- 362 (644)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST------------------THHHHHHHHHHTTHHHH--HHHTTS---
T ss_pred CHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCc------------------hHHHHHHHHHHccChHH--HHHHhC---
Confidence 3344555555432 24455555554444421100 011100 0111111111 111000
Q ss_pred hhcccCCCchhhhhhhhhhhhhhhHHHHHHHHHHHhhcccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhh-----
Q 006622 334 YEASKNTSSTAESFFSKQRNVAIAFSLVEKIIRLISNIAESEGGLIDDNTFMKVMNGLNETIGVVLEYLQDAKEH----- 408 (638)
Q Consensus 334 ~e~~~~~~~~~e~i~~~~~~L~~Cf~ilE~~I~~l~~~~e~~~~~L~~~~~~k~~~~L~Ea~~~VL~~L~~~~~~----- 408 (638)
++ +. ..+.+.+...+.+-.. .++....+.. .+++..+++.|++....
T Consensus 363 --~~------------~~------~~v~~~a~~~L~nLa~------~~~~~~~i~~--~~~i~~Lv~lL~~~~~~vr~~a 414 (644)
T 2z6h_A 363 --PP------------SH------WPLIKATVGLIRNLAL------CPANHAPLRE--QGAIPRLVQLLVRAHQDTQRRT 414 (644)
T ss_dssp --TT------------CC------HHHHHHHHHHHHHHTT------SGGGHHHHHH--TTHHHHHHHHHHHHHHHHTTC-
T ss_pred --cc------------Cc------hHHHHHHHHHHHHHcc------CHHHHHHHHH--cCCHHHHHHHHhccchhhhhHh
Confidence 00 00 0111111222221100 0111111111 13444555555542110
Q ss_pred -----------ccccCchhHHHHHHHHHHhhcCchhhHHHHH--hhhhhhhhccccCCCCCchhHHHHhhhhcccccchh
Q 006622 409 -----------ERKKGNDLLASVRLVGSYLAETPHACKEKVR--ELLQHMLSIEGEDEPSPFYSVFFLLPMLCQTTMEIE 475 (638)
Q Consensus 409 -----------~~~k~~~vlAsvRvLgawLAEe~salk~~v~--~LLPfll~~~~~~~~~~~d~lrfLLP~Lc~lT~e~~ 475 (638)
+...++.+.++++.|+ -|+.++ ..+..+. +.+|.++.+-... .....+.-+=+|++++.+.+
T Consensus 415 ~~al~n~~~~~~~~~~~v~~~a~~aL~-~La~~~-~~~~~l~~~~~i~~Lv~lL~~~---~~~v~~~a~~aL~~l~~~~~ 489 (644)
T 2z6h_A 415 SMGGTQQQFVEGVRMEEIVEGCTGALH-ILARDV-HNRIVIRGLNTIPLFVQLLYSP---IENIQRVAAGVLCELAQDKE 489 (644)
T ss_dssp ---------CCSSCHHHHHHHHHHHHH-HHTTSH-HHHHHHHHTTCHHHHHHHTTCS---CHHHHHHHHHHHHHHHTSHH
T ss_pred hhccccchhcccccHHHHHHHHHHHHH-HHhcCH-HHHHHHHhCCcHHHHHHHHcCC---CHHHHHHHHHHHHHHHcCHH
Confidence 0011223457777776 344444 3344443 5788888887542 23456666677888888899
Q ss_pred hhhHhhccCChHHHHHHHHHHhcCCCccccCchhHHHHHHHHHHHHhcC
Q 006622 476 GCKDLVSSGMYKAVAECLIKLIGPGRVTVEDDGCIFLACDTILNLLLKK 524 (638)
Q Consensus 476 gr~iL~s~~~~~~L~~~l~~~~~~~~~~~~~~~~l~~aC~illNl~v~~ 524 (638)
.++.+...|+.+.|.+.+ ... +...-..|+.++-|+....
T Consensus 490 ~~~~i~~~g~l~~L~~ll----~~~-----~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 490 AAEAIEAEGATAPLTELL----HSR-----NEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp HHHHHHHTTCHHHHHHHT----TCS-----CHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHcCChhHHHHHH----cCC-----CHHHHHHHHHHHHHHhccC
Confidence 999999999988877754 221 2244566777888875544
No 5
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.79 E-value=0.015 Score=55.93 Aligned_cols=154 Identities=16% Similarity=0.240 Sum_probs=109.0
Q ss_pred cHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHH
Q 006622 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVL 96 (638)
Q Consensus 17 ~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvL 96 (638)
.+...+++|++.+.+-|..++..+.++... +.+....+.++=+.+.|-++|+++ ....+.-|+..|
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~-------------~~~v~~~a~~~L 120 (252)
T 4db8_A 55 ALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSP-------------NEQILQEALWAL 120 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHGGGCS-------------CHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHcCC-------------CHHHHHHHHHHH
Confidence 466778888888888888888888888874 455566777776667888888773 235677888999
Q ss_pred HHhcCCcccc-cCcccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCCcchH
Q 006622 97 AAFCRVPEIA-SSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLM 175 (638)
Q Consensus 97 aaF~~~pe~A-~~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~s~~~ 175 (638)
..++..++.. ..---.+-||.|++.+... +..+...++.+|..++...++..+.+.+.|+++.+...+. .+...-.
T Consensus 121 ~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~ 197 (252)
T 4db8_A 121 SNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS--SPNEQIL 197 (252)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGG--CSSHHHH
T ss_pred HHhhcCCchHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHC--CCCHHHH
Confidence 9999865543 1111124579999999654 4556789999999997445666778889999999854443 2233345
Q ss_pred HHHHHHHHHHHh
Q 006622 176 ELAIRLLQLMLS 187 (638)
Q Consensus 176 e~Al~LL~~LL~ 187 (638)
..|+..|..+..
T Consensus 198 ~~a~~~L~~l~~ 209 (252)
T 4db8_A 198 QEALWALSNIAS 209 (252)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 677777777764
No 6
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.72 E-value=0.098 Score=53.88 Aligned_cols=195 Identities=16% Similarity=0.246 Sum_probs=133.3
Q ss_pred CccHHHHHHhcccC------------CchhhHHHHHHHHhcCCCCCHHHHHHHHHhcC-c-hhHHHHHhcCCCCCCCCCC
Q 006622 15 SPSLDDCLKLLKGE------------RDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVG-P-RFLDRLLRTGLGKGINSGN 80 (638)
Q Consensus 15 ~~~l~~cl~lLk~~------------~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG-~-~FL~RLL~T~~~~~~~~~~ 80 (638)
...+++|+..|++. +.++|..+|-.+..++++.| ....+. .+| . .++.|||.++
T Consensus 27 ~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~d--na~~~~-~~G~l~~Lv~~lL~s~--------- 94 (296)
T 1xqr_A 27 VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMD--NAADFC-QLSGMHLLVGRYLEAG--------- 94 (296)
T ss_dssp HHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHH--HHHHHH-HTTHHHHHHHTTTTCS---------
T ss_pred HHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChh--hHHHHH-HcCCHHHHHHHHHcCC---------
Confidence 34589999999974 34689999999999999533 223333 344 2 5666688764
Q ss_pred CCcchHHHHHHHHHHHHHhcC-CcccccCcccc--cchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCc
Q 006622 81 SSENRDAYLQLSVTVLAAFCR-VPEIASSEDMV--SKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGG 157 (638)
Q Consensus 81 ~~~~~~~~~~LavsvLaaF~~-~pe~A~~~~~v--~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~ 157 (638)
....+.-|+.+|+..++ .|+.- ..++ +-||.|+..+...++.++...|+-+|..++...+++.+.+.+.|+
T Consensus 95 ----~~~vr~~Aa~~Lg~ia~~n~~~~--~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~gg 168 (296)
T 1xqr_A 95 ----AAGLRWRAAQLIGTCSQNVAAIQ--EQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDG 168 (296)
T ss_dssp ----SHHHHHHHHHHHHHHHTTCHHHH--HHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred ----CHHHHHHHHHHHHHHHhCCHHHH--HHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCC
Confidence 23567788888888887 44432 1222 568999999986656677789999999987567888999999999
Q ss_pred hHHHHHHHhcccCCcchHHHHHHHHHHHHhccccccccccchhhHH--HHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhh
Q 006622 158 MKVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELS--TIVTVVAREFAVLHNALKFESLHLLTAVLSSN 235 (638)
Q Consensus 158 v~~l~~~i~~~~~~s~~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~--~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~~ 235 (638)
++.+...+.. ....-...|...|..+.... .+. ...+. .+++.|..-....+...+-.++..|..++...
T Consensus 169 i~~L~~lL~~--~d~~v~~~A~~aLs~L~~~~-~~~-----~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 169 FSVLMRAMQQ--QVQKLKVKSAFLLQNLLVGH-PEH-----KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHHHHHS--SCHHHHHHHHHHHHHHHHHC-GGG-----HHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHHHHhCC-hHH-----HHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 9998555542 23333455667777766552 221 11121 24566666666666777888888888888764
No 7
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.62 E-value=0.048 Score=58.85 Aligned_cols=201 Identities=10% Similarity=0.050 Sum_probs=133.4
Q ss_pred CCccHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHH
Q 006622 14 PSPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSV 93 (638)
Q Consensus 14 ~~~~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lav 93 (638)
....+...+++|++.+.+.++.++-.+++++...+...++.+.++=+.+.|-++|.++ +....+.-|+
T Consensus 72 ~~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~------------~~~~v~~~A~ 139 (528)
T 4b8j_A 72 KLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE------------DFPQLQFEAA 139 (528)
T ss_dssp ---CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCT------------TCHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCC------------CCHHHHHHHH
Confidence 3456899999999888889999999999998865545566777776678888888764 1134566788
Q ss_pred HHHHHhcCC-cccccCcccc--cchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccC
Q 006622 94 TVLAAFCRV-PEIASSEDMV--SKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFAD 170 (638)
Q Consensus 94 svLaaF~~~-pe~A~~~~~v--~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~ 170 (638)
..|..++.. |+... .++ +-||.|++.+... +..+...|..+|..++...+..+..+.+.|+++.+...+.. ..
T Consensus 140 ~~L~~l~~~~~~~~~--~~~~~g~i~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~-~~ 215 (528)
T 4b8j_A 140 WALTNIASGTSENTK--VVIDHGAVPIFVKLLGSS-SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNE-HT 215 (528)
T ss_dssp HHHHHHHTSCHHHHH--HHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCT-TC
T ss_pred HHHHHHhCCCHHHHH--HHHhCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhc-CC
Confidence 888888874 44331 122 4689999998764 45556889999999974446667888899999998554422 22
Q ss_pred CcchHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhh
Q 006622 171 GSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSN 235 (638)
Q Consensus 171 ~s~~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~~ 235 (638)
...-...|...|..|.... +.. .......+++.|..-........+..+|..|..+....
T Consensus 216 ~~~v~~~a~~~L~~L~~~~-~~~----~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 275 (528)
T 4b8j_A 216 KLSMLRNATWTLSNFCRGK-PQP----SFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT 275 (528)
T ss_dssp CHHHHHHHHHHHHHHHCSS-SCC----CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC
T ss_pred CHHHHHHHHHHHHHHHcCC-CCC----cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence 3334466666666665543 111 11122345555666555555667777788888776543
No 8
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.60 E-value=0.057 Score=58.98 Aligned_cols=207 Identities=15% Similarity=0.086 Sum_probs=130.0
Q ss_pred CccHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHH
Q 006622 15 SPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVT 94 (638)
Q Consensus 15 ~~~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lavs 94 (638)
...+++.++.+++.+-+.++.++--+.|++..+....+..|-++=+.+-|=++|... . ....+.-|..
T Consensus 75 ~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~-----------~-~~~~q~~Aa~ 142 (529)
T 3tpo_A 75 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT-----------D-CSPIQFESAW 142 (529)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCT-----------T-CHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCC-----------C-CHHHHHHHHH
Confidence 456999999999999999999999999998765555566777764446666677653 1 1233444666
Q ss_pred HHHHhcC-CcccccCcccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCCcc
Q 006622 95 VLAAFCR-VPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSR 173 (638)
Q Consensus 95 vLaaF~~-~pe~A~~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~s~ 173 (638)
+|..++. .++....---.+-||.|+..+.. ++..+...|..+|..++..+++-+..+++.|+++.+...+.. ++.+.
T Consensus 143 aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s-~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~-~~~~~ 220 (529)
T 3tpo_A 143 ALTNIASGTSEQTKAVVDGGAIPAFISLLAS-PHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAV-PDLST 220 (529)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCS-SCGGG
T ss_pred HHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhc-cchhH
Confidence 7777775 44332111112468999997755 445557899999999975467888889999999998554432 22221
Q ss_pred hHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhh
Q 006622 174 LMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSN 235 (638)
Q Consensus 174 ~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~~ 235 (638)
.....++-....++......-..........+++.|.+-......+.+..+|..|..+....
T Consensus 221 ~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~ 282 (529)
T 3tpo_A 221 LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP 282 (529)
T ss_dssp SCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC
T ss_pred hHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhh
Confidence 11222332333333221111111122234556777777666667778888888888776554
No 9
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=96.57 E-value=1 Score=50.21 Aligned_cols=414 Identities=9% Similarity=0.027 Sum_probs=210.7
Q ss_pred CccHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHh-cCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHH
Q 006622 15 SPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDA-VGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSV 93 (638)
Q Consensus 15 ~~~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~A-iG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lav 93 (638)
...+...+++|++.+..-|-.++..+.++....+ ..+.+.+. =+...|-++|+++ + ....+.-|+
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~--~~~~i~~~~~~i~~Lv~~L~~~--~----------~~~~~~~A~ 78 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA--SRHAIMRSPQMVSAIVRTMQNT--N----------DVETARCTA 78 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT--HHHHHTTCHHHHHHHHHHHHSC--C----------CHHHHHHHH
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh--hHHHHHhccChHHHHHHHHhcC--C----------CHHHHHHHH
Confidence 3458899999998888889999999999998654 34444433 2246677777764 1 133456777
Q ss_pred HHHHHhcCCcccccCcccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCCcc
Q 006622 94 TVLAAFCRVPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSR 173 (638)
Q Consensus 94 svLaaF~~~pe~A~~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~s~ 173 (638)
..|..++..++....---.+-||.|++.+... +..+...|+.+|..++...++..+.+.+.|+++.+...+.. +...
T Consensus 79 ~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~--~~~~ 155 (644)
T 2z6h_A 79 GTLHNLSHHREGLLAIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK--TNVK 155 (644)
T ss_dssp HHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC--CCHH
T ss_pred HHHHHHhcChhhHHHHHHcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc--CCHH
Confidence 88888998776332111124689999998764 45667999999999974345566677789999998554432 2222
Q ss_pred hHHHHHHHHHHHHhcccccccc-ccchhhHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHhhhhhhhhhHHHHhhcCCCcc
Q 006622 174 LMELAIRLLQLMLSKLSLEIIT-NDYLSELSTIVTVVAREFAVLH-NALKFESLHLLTAVLSSNYSALLHEALRVMPDSK 251 (638)
Q Consensus 174 ~~e~Al~LL~~LL~~~~~~~~~-~~~~~~l~~lv~~lA~~F~~~~-~~~Kfe~l~~L~~lL~~~~~~~~~~~l~~~~~~~ 251 (638)
-...+...|..+-.... +... ...... ++.+.+-+.... ...+..++..|..+-... .......
T Consensus 156 ~~~~a~~~L~~La~~~~-~~~~~i~~~g~----v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~--~~~~~l~------- 221 (644)
T 2z6h_A 156 FLAITTDCLQILAYGNQ-ESKLIILASGG----PQALVNIMRTYTYEKLLWTTSRVLKVLSVCS--SNKPAIV------- 221 (644)
T ss_dssp HHHHHHHHHHHHHTTCH-HHHHHHHHTTH----HHHHHHHHTTCCCHHHHHHHHHHHHHHTTCT--THHHHHH-------
T ss_pred HHHHHHHHHHHHHhcCc-HHHHHHHHcCC----hHHHHHHHHcCChHHHHHHHHHHHHHHhcCc--ccHHHHH-------
Confidence 22333444544443211 1000 000111 222322222211 122233344443332211 0000000
Q ss_pred hhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhcCCCcccCCCCCCCCcCCCCccchHHHHhhhhhHHHHHhcchhhh
Q 006622 252 WSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEEWLIGKIDLPDIQDSIPSDRCLLLVLESSRVEIAVLLNELAY 331 (638)
Q Consensus 252 W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~G~~Wl~~~~~~~~~~~~~~~~kFllLll~la~VEVrm~Leela~ 331 (638)
...+..-|..+|++. .+.-|..++.....+.... ..+ +. ....+-.++++.. ..
T Consensus 222 -~~g~l~~L~~ll~~~-~~~~~~~a~~~L~nL~~~~-~~~-----------~~--~~~~i~~Lv~lL~--------~~-- 275 (644)
T 2z6h_A 222 -EAGGMQALGLHLTDP-SQRLVQNCLWTLRNLSDAA-TKQ-----------EG--MEGLLGTLVQLLG--------SD-- 275 (644)
T ss_dssp -HTTHHHHHHTTTTCS-CHHHHHHHHHHHHHHGGGC-TTC-----------CS--CHHHHHHHHHHTT--------CS--
T ss_pred -HCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcc-hhh-----------hh--hhhHHHHHHHHHc--------CC--
Confidence 000112233334333 3344444554444443221 000 00 1122222222211 00
Q ss_pred hhhhcccCCCchhhhhhhhhhhhhhhHHHHHHHHHHHhhcccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 006622 332 LKYEASKNTSSTAESFFSKQRNVAIAFSLVEKIIRLISNIAESEGGLIDDNTFMKVMNGLNETIGVVLEYLQDAKEHERK 411 (638)
Q Consensus 332 ~~~e~~~~~~~~~e~i~~~~~~L~~Cf~ilE~~I~~l~~~~e~~~~~L~~~~~~k~~~~L~Ea~~~VL~~L~~~~~~~~~ 411 (638)
+ .++ ...+|..+ .+++.. +++....+.. .+++..++++|+...+ .
T Consensus 276 ----d--------~~v-----~~~a~~aL-----~~L~~~--------~~~~~~~v~~--~g~v~~Lv~lL~~~~~---~ 320 (644)
T 2z6h_A 276 ----D--------INV-----VTCAAGIL-----SNLTCN--------NYKNKMMVCQ--VGGIEALVRTVLRAGD---R 320 (644)
T ss_dssp ----C--------HHH-----HHHHHHHH-----HHHHTT--------CHHHHHHHHH--TTHHHHHHHHHHHHTT---C
T ss_pred ----C--------HHH-----HHHHHHHH-----HHHHcC--------CHHHHHHHHH--cCCHHHHHHHHHccCC---c
Confidence 0 000 01111111 122221 1122222222 2466777777776221 1
Q ss_pred cCchhHHHHHHHHHHhhcCch--hhHHHHH--hhhhhhhhccccCCCCCchhHHHHhhhhcccccchhhhhHhhccCChH
Q 006622 412 KGNDLLASVRLVGSYLAETPH--ACKEKVR--ELLQHMLSIEGEDEPSPFYSVFFLLPMLCQTTMEIEGCKDLVSSGMYK 487 (638)
Q Consensus 412 k~~~vlAsvRvLgawLAEe~s--alk~~v~--~LLPfll~~~~~~~~~~~d~lrfLLP~Lc~lT~e~~gr~iL~s~~~~~ 487 (638)
......++|.|+..-...+. ..+..+. +.+|.++.+-..... .....-..=+|++++..+.-++.++..|+..
T Consensus 321 -~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~--~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~ 397 (644)
T 2z6h_A 321 -EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH--WPLIKATVGLIRNLALCPANHAPLREQGAIP 397 (644)
T ss_dssp -HHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCC--HHHHHHHHHHHHHHTTSGGGHHHHHHTTHHH
T ss_pred -HHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCc--hHHHHHHHHHHHHHccCHHHHHHHHHcCCHH
Confidence 23456888888877554343 2233343 678888888765321 2333344556778888888889999999999
Q ss_pred HHHHHHHHH---hcCCC--------cc--ccCchhHHHHHHHHHHHHhc
Q 006622 488 AVAECLIKL---IGPGR--------VT--VEDDGCIFLACDTILNLLLK 523 (638)
Q Consensus 488 ~L~~~l~~~---~~~~~--------~~--~~~~~~l~~aC~illNl~v~ 523 (638)
.|++.+... ++.+. .+ ..++.-...+|++|-|+...
T Consensus 398 ~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~ 446 (644)
T 2z6h_A 398 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD 446 (644)
T ss_dssp HHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcC
Confidence 999988763 11100 00 01233456789999988754
No 10
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.56 E-value=0.043 Score=52.13 Aligned_cols=194 Identities=18% Similarity=0.250 Sum_probs=126.3
Q ss_pred cHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHH
Q 006622 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVL 96 (638)
Q Consensus 17 ~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvL 96 (638)
.+...+++|++.+.+-|-.++..+.++... +.+....+.+.=+.+.|-++|+++ ....+.-|+.+|
T Consensus 45 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~l~~ll~~~-------------~~~v~~~a~~~L 110 (252)
T 4hxt_A 45 GVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTST-------------DSEVQKEAARAL 110 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCS-------------SHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-ChHHHHHHHHCCCHHHHHHHHcCC-------------CHHHHHHHHHHH
Confidence 467777888887777777778888888763 355566666665667777777753 245677889999
Q ss_pred HHhcC-CcccccCcccc--cchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCCcc
Q 006622 97 AAFCR-VPEIASSEDMV--SKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSR 173 (638)
Q Consensus 97 aaF~~-~pe~A~~~~~v--~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~s~ 173 (638)
..+|. .|+... .++ +-||.|++.+...+ ..+...++.+|..++...+...+.+.+.|+++.+...+. .+...
T Consensus 111 ~~l~~~~~~~~~--~~~~~~~i~~L~~~l~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~ 185 (252)
T 4hxt_A 111 ANIASGPDEAIK--AIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT--STDSE 185 (252)
T ss_dssp HHHTTSCHHHHH--HHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT--CSCHH
T ss_pred HHHHcCCHHHHH--HHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHC--CCCHH
Confidence 99994 555442 222 45899999987554 555799999999997434555578889999999855443 23334
Q ss_pred hHHHHHHHHHHHHhccccccccccchhhH--HHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhh
Q 006622 174 LMELAIRLLQLMLSKLSLEIITNDYLSEL--STIVTVVAREFAVLHNALKFESLHLLTAVLSSN 235 (638)
Q Consensus 174 ~~e~Al~LL~~LL~~~~~~~~~~~~~~~l--~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~~ 235 (638)
-...|+..|..+.... .+ ..+.+ ...++.+..-........+-+++..|..+....
T Consensus 186 v~~~a~~~L~~l~~~~-~~-----~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 186 VQKEAARALANIASGP-TS-----AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHHHHHTTSB-HH-----HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCC-HH-----HHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 4567777777766532 11 11111 113444555444445566777777777776654
No 11
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.34 E-value=0.03 Score=61.14 Aligned_cols=204 Identities=16% Similarity=0.108 Sum_probs=127.8
Q ss_pred CccHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHH
Q 006622 15 SPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVT 94 (638)
Q Consensus 15 ~~~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lavs 94 (638)
.-++++.++.|++.|-+.++-|.--+.|++..++.-.+..|-++=+.+.|=+||... .++ ..+--|..
T Consensus 56 ~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~-----------~~~-~lq~~Aa~ 123 (510)
T 3ul1_B 56 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT-----------DCS-PIQFESAW 123 (510)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCT-----------TCH-HHHHHHHH
T ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCC-----------CCH-HHHHHHHH
Confidence 446999999999999999999999999998765444567777764446677777653 112 23444666
Q ss_pred HHHHhcC-CcccccCcccc--cchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCC
Q 006622 95 VLAAFCR-VPEIASSEDMV--SKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADG 171 (638)
Q Consensus 95 vLaaF~~-~pe~A~~~~~v--~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~ 171 (638)
.|.-++. .++.. ..++ +-||.|++.+... +..+...|..+|..++.-+++-++.+++.|+++.+...+.. ++.
T Consensus 124 aL~nias~~~e~~--~~vv~~GaIp~Lv~lL~s~-~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~-~~~ 199 (510)
T 3ul1_B 124 ALTNIASGTSEQT--KAVVDGGAIPAFISLLASP-HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAV-PDL 199 (510)
T ss_dssp HHHHHHTSCHHHH--HHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCS-SCG
T ss_pred HHHHHhcCCHHHH--HHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHh-ccc
Confidence 7777765 44433 1222 3589999999754 45557889999999974457778888999999998555432 222
Q ss_pred cchHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhh
Q 006622 172 SRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSS 234 (638)
Q Consensus 172 s~~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~ 234 (638)
.......++-....+.......-..........+++.|.+-......+.+-.+|..|..+...
T Consensus 200 ~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~ 262 (510)
T 3ul1_B 200 STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG 262 (510)
T ss_dssp GGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred hhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 222222222222233322111111112223345667777766666666777777777766544
No 12
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.27 E-value=0.047 Score=51.07 Aligned_cols=150 Identities=17% Similarity=0.262 Sum_probs=104.5
Q ss_pred cHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHH
Q 006622 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVL 96 (638)
Q Consensus 17 ~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvL 96 (638)
.+...+++|++.+.+-|-.++..+.++... +.+....+.+.=+.+.|-++|+++ ....+.-|+.+|
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~-------------~~~v~~~a~~~L 120 (210)
T 4db6_A 55 ALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSP-------------NEQILQEALWAL 120 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHTTCS-------------CHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CcHHHHHHHHCCCHHHHHHHHcCC-------------cHHHHHHHHHHH
Confidence 466777888887777777888888888763 455566777776777888888764 234567788888
Q ss_pred HHhcC-CcccccCccc--ccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCCcc
Q 006622 97 AAFCR-VPEIASSEDM--VSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSR 173 (638)
Q Consensus 97 aaF~~-~pe~A~~~~~--v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~s~ 173 (638)
..+|. .|+... .+ .+-||.|++.+... +..+...|+.+|..++..+++..+.+.+.|+++.+ .++.. .+...
T Consensus 121 ~~l~~~~~~~~~--~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L-~~ll~-~~~~~ 195 (210)
T 4db6_A 121 SNIASGGNEQIQ--AVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKEAGALEKL-EQLQS-HENEK 195 (210)
T ss_dssp HHHTTSCHHHHH--HHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH-HHGGG-CSCHH
T ss_pred HHHHcCCHHHHH--HHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHH-HHHHh-CCCHH
Confidence 88886 444321 11 24579999999765 45567999999999975458888889999999997 44432 23334
Q ss_pred hHHHHHHHHHHH
Q 006622 174 LMELAIRLLQLM 185 (638)
Q Consensus 174 ~~e~Al~LL~~L 185 (638)
-.+.|...|..|
T Consensus 196 v~~~a~~aL~~l 207 (210)
T 4db6_A 196 IQKEAQEALEKL 207 (210)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456666666554
No 13
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.24 E-value=0.71 Score=53.27 Aligned_cols=194 Identities=11% Similarity=0.134 Sum_probs=122.4
Q ss_pred cHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHH
Q 006622 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVL 96 (638)
Q Consensus 17 ~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvL 96 (638)
.+...+++|++.++.-|..++-.+.+++...+ +..+.+-++=+..-|-+||++. ....+..++..|
T Consensus 235 ~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~-~~~~~v~~~g~v~~Lv~lL~~~-------------~~~v~~~a~~aL 300 (780)
T 2z6g_A 235 GIPALVNMLGSPVDSVLFHAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKT-------------NVKFLAITTDCL 300 (780)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGCC-------------CHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCh-hhHHHHHHcCCHHHHHHHHhcC-------------CHHHHHHHHHHH
Confidence 46667778887777778888888888876422 2333444444556667777653 123466677777
Q ss_pred HHhcC-CcccccCcccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCCcchH
Q 006622 97 AAFCR-VPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLM 175 (638)
Q Consensus 97 aaF~~-~pe~A~~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~s~~~ 175 (638)
..++. .++....---.+-||.|++++...+.+.....+..+|..++ ..++....+++.|+++.+...+.. ....-.
T Consensus 301 ~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls-~~~~~~~~i~~~g~l~~Ll~lL~~--~~~~~~ 377 (780)
T 2z6g_A 301 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS-VCSSNKPAIVEAGGMQALGLHLTD--PSQRLV 377 (780)
T ss_dssp HHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHH-TSTTHHHHHHHTTHHHHHGGGTTC--SCHHHH
T ss_pred HHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh-cChHHHHHHHHhchHHHHHHHHcC--CchHHH
Confidence 77775 33332100001457899999987666655567888998997 588888999999999997444331 222335
Q ss_pred HHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhh
Q 006622 176 ELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSS 234 (638)
Q Consensus 176 e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~ 234 (638)
..|+..|..|..... . . .....+++.|...+.......+..++..|..+-..
T Consensus 378 ~~a~~~L~~L~~~~~-~-~-----~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~ 429 (780)
T 2z6g_A 378 QNCLWTLRNLSDAAT-K-Q-----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 429 (780)
T ss_dssp HHHHHHHHHHHTTCT-T-C-----SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhccch-h-h-----hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 566666666655432 1 1 11234666676666666667777888888877654
No 14
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.20 E-value=0.67 Score=47.95 Aligned_cols=237 Identities=13% Similarity=0.148 Sum_probs=140.0
Q ss_pred cHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHH
Q 006622 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVL 96 (638)
Q Consensus 17 ~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvL 96 (638)
.+..-+++|++.+.+-|..++..+.++... +.+....+.+.=+...|-++|.+. +....+.-|+..|
T Consensus 108 ~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~------------~~~~v~~~a~~~L 174 (450)
T 2jdq_A 108 AVPIFIELLSSEFEDVQEQAVWALGNIAGD-STMCRDYVLDCNILPPLLQLFSKQ------------NRLTMTRNAVWAL 174 (450)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHHTTSC------------CCHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHccC-CHHHHHHHHHCCCHHHHHHHhcCC------------CCHHHHHHHHHHH
Confidence 455666677766666677777777777663 333444555555556666666642 1356788899999
Q ss_pred HHhcCC--cccccCcccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCCcch
Q 006622 97 AAFCRV--PEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRL 174 (638)
Q Consensus 97 aaF~~~--pe~A~~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~s~~ 174 (638)
..+|+. |... ..-+..-+|.|++.+... +..+...++.+|..++...++..+.+.+.|+++.+...+. .+...-
T Consensus 175 ~~l~~~~~~~~~-~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v 250 (450)
T 2jdq_A 175 SNLCRGKSPPPE-FAKVSPCLNVLSWLLFVS-DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM--HNDYKV 250 (450)
T ss_dssp HHHHCCSSSCCC-GGGTGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT--CSCHHH
T ss_pred HHHhCCCCCCCC-HHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC--CCchhH
Confidence 999974 4332 233456789999998754 4556789999998886434566777888999999865543 233334
Q ss_pred HHHHHHHHHHHHhcccccccc-ccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhhhHHHHhhcCCCcchh
Q 006622 175 MELAIRLLQLMLSKLSLEIIT-NDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWS 253 (638)
Q Consensus 175 ~e~Al~LL~~LL~~~~~~~~~-~~~~~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~~~~~~~~~~l~~~~~~~W~ 253 (638)
...|+..|..+..... +... .-+. .+++.+..-........+.+++..|..+-... +....... .
T Consensus 251 ~~~a~~~L~~l~~~~~-~~~~~~~~~----~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~-~~~~~~~~--------~ 316 (450)
T 2jdq_A 251 VSPALRAVGNIVTGDD-IQTQVILNC----SALQSLLHLLSSPKESIKKEACWTISNITAGN-RAQIQTVI--------D 316 (450)
T ss_dssp HHHHHHHHHHHTTSCH-HHHHHHHTT----THHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC-HHHHHHHH--------H
T ss_pred HHHHHHHHHHHhhCCh-HHHHHHHHC----ccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHH--------H
Confidence 5677777777665431 1100 0001 24555555555555677788888888877543 11111100 1
Q ss_pred HHHHHHHHHHHhcCCChhhhhhHHHHHHHHHh
Q 006622 254 MYMRVGVVAILQNRVAPAEKLQALILAESIVS 285 (638)
Q Consensus 254 ~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~ 285 (638)
..+..-|..+|++. .+.-|..|......+..
T Consensus 317 ~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 317 ANIFPALISILQTA-EFRTRKEAAWAITNATS 347 (450)
T ss_dssp TTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHc
Confidence 12334555556654 34445555555555443
No 15
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=96.17 E-value=0.43 Score=50.63 Aligned_cols=152 Identities=16% Similarity=0.187 Sum_probs=97.5
Q ss_pred cHHHHHHhcccC-CchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHH
Q 006622 17 SLDDCLKLLKGE-RDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTV 95 (638)
Q Consensus 17 ~l~~cl~lLk~~-~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lavsv 95 (638)
.+...+++|+.. +.+-+..++-.+.++... .+....+.++=+.+.|-++|+++ ....+..|+..
T Consensus 60 ~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~-------------~~~v~~~a~~~ 124 (529)
T 1jdh_A 60 MVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSP-------------VDSVLFYAITT 124 (529)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCS-------------CHHHHHHHHHH
T ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCC-------------CHHHHHHHHHH
Confidence 466777778754 555566666777777653 44667777774557777777663 13467788889
Q ss_pred HHHhcCCcccccCccc--ccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCCcc
Q 006622 96 LAAFCRVPEIASSEDM--VSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSR 173 (638)
Q Consensus 96 LaaF~~~pe~A~~~~~--v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~s~ 173 (638)
|..+|.+++-.+ ..+ .+-||.|++.+...+ ..+...+..+|..++...++..+.+.+.|+++.+...+.. .+...
T Consensus 125 L~~l~~~~~~~~-~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~-~~~~~ 201 (529)
T 1jdh_A 125 LHNLLLHQEGAK-MAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT-YTYEK 201 (529)
T ss_dssp HHHHHHHCTTHH-HHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH-CCCHH
T ss_pred HHHHhcCCcchH-HHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHh-CChHH
Confidence 998887432221 112 256899999997644 3334666778888864468888999999999998665543 22222
Q ss_pred hHHHHHHHHHHHH
Q 006622 174 LMELAIRLLQLML 186 (638)
Q Consensus 174 ~~e~Al~LL~~LL 186 (638)
....+..+|..+-
T Consensus 202 ~~~~a~~~L~~l~ 214 (529)
T 1jdh_A 202 LLWTTSRVLKVLS 214 (529)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 3344555555443
No 16
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=95.99 E-value=0.062 Score=56.67 Aligned_cols=196 Identities=14% Similarity=0.119 Sum_probs=122.9
Q ss_pred HHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHH
Q 006622 18 LDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLA 97 (638)
Q Consensus 18 l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLa 97 (638)
+..-+++|++.+++-+..+.-.+..+....+.+....|-++=|.+.|-+||... . ....+.-|+..|.
T Consensus 129 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~---~---------~~~~~~~A~~aL~ 196 (354)
T 3nmw_A 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV---K---------KESTLKSVLSALW 196 (354)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHC---C---------CHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcC---C---------CHHHHHHHHHHHH
Confidence 666777888777777777777777776654555666777765667888875442 0 1234556778888
Q ss_pred HhcC-CcccccCccc---ccchhHHHHhhhccccc---chHHHHHHHHHHHHh---cccchhhHHhhcCchHHHHHHHhc
Q 006622 98 AFCR-VPEIASSEDM---VSKVPPILELMLKESGT---SILEECYEFLYLVTN---ATGDGVTTLYESGGMKVLAFQMST 167 (638)
Q Consensus 98 aF~~-~pe~A~~~~~---v~rIP~l~~~l~~~~~~---~~~~d~~~~L~~ia~---s~~~G~~~l~~~g~v~~l~~~i~~ 167 (638)
.++. .++.- +++ -+-||.|++.+...++. .+..+|.-+|..++. ..+++.+.+.+.|+++.+...+..
T Consensus 197 nLs~~~~~nk--~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~ 274 (354)
T 3nmw_A 197 NLSAHCTENK--ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS 274 (354)
T ss_dssp HHHTTCHHHH--HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC
T ss_pred HHHccChhhh--HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC
Confidence 8887 44432 333 35689999999876553 467889999988862 388899999999999998554431
Q ss_pred ccCCcchHHHHHHHHHHHHhccccccccccchhhHH--HHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhh
Q 006622 168 FADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELS--TIVTVVAREFAVLHNALKFESLHLLTAVLSSN 235 (638)
Q Consensus 168 ~~~~s~~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~--~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~~ 235 (638)
......+.|...|..+-... . +..+.+. -.++.|..-....+...|-+++..|..+....
T Consensus 275 --~~~~v~~~A~~aL~nLa~~~-~-----~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 275 --HSLTIVSNACGTLWNLSARN-P-----KDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp --SCHHHHHHHHHHHHHHTSSC-H-----HHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred --CChHHHHHHHHHHHHHhCCC-H-----HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 22234566777777664321 1 1111111 12344444333444555666666666666553
No 17
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=95.65 E-value=0.24 Score=50.98 Aligned_cols=155 Identities=12% Similarity=0.085 Sum_probs=109.8
Q ss_pred cHHHHHH-hcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHH
Q 006622 17 SLDDCLK-LLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTV 95 (638)
Q Consensus 17 ~l~~cl~-lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lavsv 95 (638)
.+...+. +|++.+..=|-.+.-.+.++..+ +....+.+.+.=|.+-|-+||++. + ....+.=|+..
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~-n~~~~~~vv~~g~l~~Ll~LL~~~--------~----~~~v~~~A~~A 148 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQN-VAAIQEQVLGLGALRKLLRLLDRD--------A----CDTVRVKALFA 148 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHHHC--------S----CHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHccC--------C----CHHHHHHHHHH
Confidence 3556677 77777666677777777777764 444455666665667777888863 1 24677888899
Q ss_pred HHHhcC-CcccccCccc--ccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCCc
Q 006622 96 LAAFCR-VPEIASSEDM--VSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGS 172 (638)
Q Consensus 96 LaaF~~-~pe~A~~~~~--v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~s 172 (638)
|+.+|+ .|+.. ..+ .+-||.|+..+... +..+-.+++-+|..++...++-.+.+++.|+++.++.-+. .+..
T Consensus 149 Lsnl~~~~~~~~--~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~--~~d~ 223 (296)
T 1xqr_A 149 ISCLVREQEAGL--LQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVR--TEHS 223 (296)
T ss_dssp HHHHHTTCHHHH--HHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHT--SCCS
T ss_pred HHHHHcCCcHHH--HHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHc--CCCh
Confidence 999997 44422 112 24689999998764 5556689999998886556777889999999999855444 2445
Q ss_pred chHHHHHHHHHHHHhcc
Q 006622 173 RLMELAIRLLQLMLSKL 189 (638)
Q Consensus 173 ~~~e~Al~LL~~LL~~~ 189 (638)
.-.+.|+..|..++...
T Consensus 224 ~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 224 PFHEHVLGALCSLVTDF 240 (296)
T ss_dssp THHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhCC
Confidence 56789999999998873
No 18
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=95.61 E-value=0.95 Score=48.81 Aligned_cols=237 Identities=10% Similarity=0.101 Sum_probs=141.3
Q ss_pred cHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHH
Q 006622 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVL 96 (638)
Q Consensus 17 ~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvL 96 (638)
.+...+++|++.+.+-|..++-.+.+++.. +......+.+.=+...|-++|... ....+.-|+..|
T Consensus 174 ~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~-------------~~~v~~~a~~~L 239 (530)
T 1wa5_B 174 AVPLFIQLLYTGSVEVKEQAIWALGNVAGD-STDYRDYVLQCNAMEPILGLFNSN-------------KPSLIRTATWTL 239 (530)
T ss_dssp CHHHHHHHHHHCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHGGGSC-------------CHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-CccchHHHHHcCcHHHHHHHhccC-------------CHHHHHHHHHHH
Confidence 455666667666666677777777777653 233344555554456666666652 234566788999
Q ss_pred HHhcCCc-ccccCcccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCCcchH
Q 006622 97 AAFCRVP-EIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLM 175 (638)
Q Consensus 97 aaF~~~p-e~A~~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~s~~~ 175 (638)
+.+|+.+ ..........-+|.|+..+... +..+...++.+|..++...++..+.+++.|+++.+...+. .....-.
T Consensus 240 ~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~--~~~~~v~ 316 (530)
T 1wa5_B 240 SNLCRGKKPQPDWSVVSQALPTLAKLIYSM-DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS--HESTLVQ 316 (530)
T ss_dssp HHHHCCSSSCCCHHHHGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG--CSCHHHH
T ss_pred HHHhCCCCCCCcHHHHHhHHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC--CCChhhH
Confidence 9999753 2222233446689999988654 4566789999999987445667888889999999855443 2233345
Q ss_pred HHHHHHHHHHHhccccccccccchhhH--HHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhhhHHHHhhcCCCcchh
Q 006622 176 ELAIRLLQLMLSKLSLEIITNDYLSEL--STIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWS 253 (638)
Q Consensus 176 e~Al~LL~~LL~~~~~~~~~~~~~~~l--~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~~~~~~~~~~l~~~~~~~W~ 253 (638)
..|+..|..+..... ... +.+ ..+++.+..-+.......+.+++..|..+.... +...... ..
T Consensus 317 ~~a~~~L~~l~~~~~-~~~-----~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~-~~~~~~~--------~~ 381 (530)
T 1wa5_B 317 TPALRAVGNIVTGND-LQT-----QVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN-TEQIQAV--------ID 381 (530)
T ss_dssp HHHHHHHHHHTTSCH-HHH-----HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHH--------HH
T ss_pred HHHHHHHHHHHcCCH-HHH-----HHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHH--------HH
Confidence 677888777765431 110 001 124455555555555677788888888876543 1111110 01
Q ss_pred HHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhh
Q 006622 254 MYMRVGVVAILQNRVAPAEKLQALILAESIVSI 286 (638)
Q Consensus 254 ~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l 286 (638)
..+...|..+|++. .+.-|..|+.....+...
T Consensus 382 ~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 382 ANLIPPLVKLLEVA-EYKTKKEACWAISNASSG 413 (530)
T ss_dssp TTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhc
Confidence 12235566667654 445566666666666554
No 19
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=95.56 E-value=0.046 Score=58.90 Aligned_cols=131 Identities=15% Similarity=0.219 Sum_probs=101.5
Q ss_pred cHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHH
Q 006622 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVL 96 (638)
Q Consensus 17 ~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvL 96 (638)
.+...+++|++.+++-++.+.--+++++.. +.+....|.++=|.+.|-+||+++ ....+.-|+..|
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~s~-------------~~~~~~~A~~aL 68 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQ-DESAKQQVYQLGGICKLVDLLRSP-------------NQNVQQAAAGAL 68 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSS-CSSHHHHHHHTTHHHHHHHHTTSS-------------CHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcC-ChHHHHHHHHcCCHHHHHHHHcCC-------------CHHHHHHHHHHH
Confidence 578899999999999999999999999964 333445677777778888999874 124567788888
Q ss_pred HHhcCC-cccccCccc--ccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHH
Q 006622 97 AAFCRV-PEIASSEDM--VSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQM 165 (638)
Q Consensus 97 aaF~~~-pe~A~~~~~--v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i 165 (638)
..++.. |+.- ..+ .+-||.|++.+.++++..+...+..+|..++ ..++.+..+++ |+++.+...+
T Consensus 69 ~nLa~~~~~~k--~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa-~~~~~~~~i~~-g~i~~Lv~ll 136 (457)
T 1xm9_A 69 RNLVFRSTTNK--LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLS-STDELKEELIA-DALPVLADRV 136 (457)
T ss_dssp HHHHSSCHHHH--HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHH-TSSSTHHHHHH-HHHHHHHHHT
T ss_pred HHHhcCCHHHH--HHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHh-cCHHhHHHHHh-ccHHHHHHHH
Confidence 888874 5543 222 2568999999985666666799999999998 57888888888 9999985554
No 20
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=95.51 E-value=0.21 Score=56.98 Aligned_cols=254 Identities=15% Similarity=0.170 Sum_probs=162.4
Q ss_pred CccHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHh-cCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHH
Q 006622 15 SPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDA-VGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSV 93 (638)
Q Consensus 15 ~~~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~A-iG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lav 93 (638)
...+.--+.+|+..+=.-|+-++=+++-++.+.....-+.|.++ .|..=|=.+|... ++.-+.-|+
T Consensus 121 ~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~-------------rE~iRneal 187 (651)
T 3grl_A 121 QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS-------------REVIRNDGV 187 (651)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS-------------SHHHHHHHH
T ss_pred CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc-------------hHHHHHHHH
Confidence 34566668889888888999999999999998666677777766 6655555555442 688999999
Q ss_pred HHHHHhcC-CcccccCcccccchhHHHHhhhccc---ccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhccc
Q 006622 94 TVLAAFCR-VPEIASSEDMVSKVPPILELMLKES---GTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFA 169 (638)
Q Consensus 94 svLaaF~~-~pe~A~~~~~v~rIP~l~~~l~~~~---~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~ 169 (638)
.+|...++ .+++-.==-+-+-+|.|.+++...+ +..+|+||+.+|..++-..+.-+..|.+.|.++.++ .+....
T Consensus 188 lLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~-~LL~~~ 266 (651)
T 3grl_A 188 LLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMK-PWFEVG 266 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGG-GGGCCC
T ss_pred HHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHH-HHhCCC
Confidence 99999997 5555321122244899999997544 356789999999999754445788899999999983 333212
Q ss_pred CCc-ch-------HHHHHHHHHHHHhccccccccccchhhHH--HHHHHHHH-HHh-hhhhhhhHHHHHHHHHhhhhhhh
Q 006622 170 DGS-RL-------MELAIRLLQLMLSKLSLEIITNDYLSELS--TIVTVVAR-EFA-VLHNALKFESLHLLTAVLSSNYS 237 (638)
Q Consensus 170 ~~s-~~-------~e~Al~LL~~LL~~~~~~~~~~~~~~~l~--~lv~~lA~-~F~-~~~~~~Kfe~l~~L~~lL~~~~~ 237 (638)
++. .+ .-.+++++..++...+..+-...+...+. .++..+.+ .|. ......|-+++..++.+.....
T Consensus 267 ~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~- 345 (651)
T 3grl_A 267 DENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQ- 345 (651)
T ss_dssp SCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCH-
T ss_pred ccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCH-
Confidence 211 11 12366677767665432111111222222 12333333 222 2246788899999999887762
Q ss_pred hhHHHHhhc--CCCcchhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHH
Q 006622 238 ALLHEALRV--MPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIV 284 (638)
Q Consensus 238 ~~~~~~l~~--~~~~~W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll 284 (638)
...+.... .|..-=...+...|..++.++-+...|-.|+....|.+
T Consensus 346 -~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 346 -VNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp -HHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 22222211 12111123466777888889989999988888877766
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=95.49 E-value=0.33 Score=52.50 Aligned_cols=199 Identities=11% Similarity=0.094 Sum_probs=128.7
Q ss_pred CccHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHH
Q 006622 15 SPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVT 94 (638)
Q Consensus 15 ~~~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lavs 94 (638)
...+...++.|++.+.+.++.++..+++++..++...++.+.++=..+.|-++|.++ +....+.-|+.
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~------------~~~~v~~~A~~ 153 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN------------QPEMLQLEAAW 153 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT------------SCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCC------------CCHHHHHHHHH
Confidence 345888999999988888999999999998764333455666665556666666552 12345667888
Q ss_pred HHHHhcC-CcccccCccc--ccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCC
Q 006622 95 VLAAFCR-VPEIASSEDM--VSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADG 171 (638)
Q Consensus 95 vLaaF~~-~pe~A~~~~~--v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~ 171 (638)
.|..++. .|+.. ..+ .+-||.|++.+... +..+...|+.+|..++...++.+..+.+.|+++.+...+.. ..
T Consensus 154 ~L~~l~~~~~~~~--~~~~~~g~i~~Lv~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~ 228 (530)
T 1wa5_B 154 ALTNIASGTSAQT--KVVVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS--NK 228 (530)
T ss_dssp HHHHHTTSCHHHH--HHHHHTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS--CC
T ss_pred HHHHHhCCCHHHH--HHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc--CC
Confidence 8888886 34332 122 25689999999754 45567889999999974446778888899999998554432 22
Q ss_pred cchHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhh
Q 006622 172 SRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSS 234 (638)
Q Consensus 172 s~~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~ 234 (638)
..-...|+..|..|....++... ......+++.|..-+.......+..+|..|..+-..
T Consensus 229 ~~v~~~a~~~L~~L~~~~~~~~~----~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 287 (530)
T 1wa5_B 229 PSLIRTATWTLSNLCRGKKPQPD----WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG 287 (530)
T ss_dssp HHHHHHHHHHHHHHHCCSSSCCC----HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhCCCCCCCc----HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 23345677777766654311111 111223455555544444456677778888777654
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=95.44 E-value=0.071 Score=55.35 Aligned_cols=214 Identities=12% Similarity=0.058 Sum_probs=118.9
Q ss_pred CCCCCCCCCCCCCCCc--cHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHh-cCchhHHHHHhcCCCCCCC
Q 006622 1 MDYRSHSQPEESAPSP--SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDA-VGPRFLDRLLRTGLGKGIN 77 (638)
Q Consensus 1 ~~~~~~~~p~~~~~~~--~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~A-iG~~FL~RLL~T~~~~~~~ 77 (638)
|.+++..+-+.+-... .+...++.|++.+.+.|..++..+.+++.......++.+.++ -..+.|-++|+++
T Consensus 3 ~~~~~~~~~~~~w~~~~~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~------ 76 (450)
T 2jdq_A 3 MGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRK------ 76 (450)
T ss_dssp -------------------CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCT------
T ss_pred CcccchhhhHHhhccccccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCC------
Confidence 4455554444333333 378888899888888899999999998642111123445554 2234455555542
Q ss_pred CCCCCcchHHHHHHHHHHHHHhcC-CcccccCccc--ccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhh
Q 006622 78 SGNSSENRDAYLQLSVTVLAAFCR-VPEIASSEDM--VSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYE 154 (638)
Q Consensus 78 ~~~~~~~~~~~~~LavsvLaaF~~-~pe~A~~~~~--v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~ 154 (638)
+....+.-|..+|..++. .++... .+ .+-||.|++.+... +..+...|..+|..++...++.++.+++
T Consensus 77 ------~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~i~~L~~lL~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~ 147 (450)
T 2jdq_A 77 ------ENCTLQFESAWVLTNIASGNSLQTR--IVIQAGAVPIFIELLSSE-FEDVQEQAVWALGNIAGDSTMCRDYVLD 147 (450)
T ss_dssp ------TCHHHHHHHHHHHHHHHSSCHHHHH--HHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHHHHhcCCHHHHH--HHHhCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 123456677888888886 444331 12 24689999998754 4555688999999997444567788889
Q ss_pred cCchHHHHHHHhcccCCcchHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhh
Q 006622 155 SGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSS 234 (638)
Q Consensus 155 ~g~v~~l~~~i~~~~~~s~~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~ 234 (638)
.|+++.+...+.. .....-...|+..|..+....++.... . -...+++.+..-+.......+..++..|..+...
T Consensus 148 ~~~i~~L~~~l~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~-~---~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 222 (450)
T 2jdq_A 148 CNILPPLLQLFSK-QNRLTMTRNAVWALSNLCRGKSPPPEF-A---KVSPCLNVLSWLLFVSDTDVLADACWALSYLSDG 222 (450)
T ss_dssp TTCHHHHHHHTTS-CCCHHHHHHHHHHHHHHHCCSSSCCCG-G---GTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHhcC-CCCHHHHHHHHHHHHHHhCCCCCCCCH-H---HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence 9999998554431 123344567777777776543111111 0 1123344444444444445556666666666543
No 23
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=95.37 E-value=0.51 Score=50.72 Aligned_cols=236 Identities=11% Similarity=0.108 Sum_probs=146.2
Q ss_pred ccHHHHHHhcccCC-chhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHH
Q 006622 16 PSLDDCLKLLKGER-DEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVT 94 (638)
Q Consensus 16 ~~l~~cl~lLk~~~-D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lavs 94 (638)
..+...+++|+..+ .+-|+.++--++++... +.+....+.++=+...|-+||.++ ....+.-|+.
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~lL~~~-------------~~~v~~~a~~ 182 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASG-TSENTKVVIDHGAVPIFVKLLGSS-------------SDDVREQAVW 182 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHHTTCS-------------CHHHHHHHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC-CHHHHHHHHhCCcHHHHHHHhcCC-------------CHHHHHHHHH
Confidence 35788889998875 78899999999999884 455566677765557777888763 2356778888
Q ss_pred HHHHhcCCcccccCcccc--cchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCCc
Q 006622 95 VLAAFCRVPEIASSEDMV--SKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGS 172 (638)
Q Consensus 95 vLaaF~~~pe~A~~~~~v--~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~s 172 (638)
.|..+|.+..-.+ ..++ +-||.|+..+.+..+..+...+..+|..++ ............|+++.+...+. ....
T Consensus 183 aL~~l~~~~~~~~-~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~--~~~~ 258 (528)
T 4b8j_A 183 ALGNVAGDSPKCR-DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC-RGKPQPSFEQTRPALPALARLIH--SNDE 258 (528)
T ss_dssp HHHHHHHTCHHHH-HHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH-CSSSCCCHHHHTTHHHHHHHHTT--CCCH
T ss_pred HHHHHhCCChhhH-HHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH-cCCCCCcHHHHHHHHHHHHHHHC--CCCH
Confidence 8988886432211 1222 368999999976677777899999999997 35445555567889999755443 2333
Q ss_pred chHHHHHHHHHHHHhccccccccccchhhHH--HHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhhhHHHHhhcCCCc
Q 006622 173 RLMELAIRLLQLMLSKLSLEIITNDYLSELS--TIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDS 250 (638)
Q Consensus 173 ~~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~--~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~~~~~~~~~~l~~~~~~ 250 (638)
.-...|+..|..+..... +. .+.+. .+++.+..-........+..++..|..+.... +.......
T Consensus 259 ~v~~~a~~aL~~l~~~~~-~~-----~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~------ 325 (528)
T 4b8j_A 259 EVLTDACWALSYLSDGTN-DK-----IQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGD-DAQTQCII------ 325 (528)
T ss_dssp HHHHHHHHHHHHHTSSCH-HH-----HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHH------
T ss_pred HHHHHHHHHHHHHHcCCH-HH-----HHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCC-HHHHHHHH------
Confidence 345566666666543321 10 01111 13455555555556677888888888887654 11111111
Q ss_pred chhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHH
Q 006622 251 KWSMYMRVGVVAILQNRVAPAEKLQALILAESIV 284 (638)
Q Consensus 251 ~W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll 284 (638)
...+..-|..+|++.-.+.-|..|......+.
T Consensus 326 --~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~ 357 (528)
T 4b8j_A 326 --DHQALPCLLSLLTQNLKKSIKKEACWTISNIT 357 (528)
T ss_dssp --TTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred --HhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 11233556666776545555555555554444
No 24
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=95.36 E-value=0.13 Score=54.71 Aligned_cols=232 Identities=11% Similarity=0.097 Sum_probs=139.9
Q ss_pred cHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHH
Q 006622 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVL 96 (638)
Q Consensus 17 ~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvL 96 (638)
.+...+++|++.++.-+..++-.+.+++..++ +..+.+.++=+.+-|-++|+++ ....+..+...|
T Consensus 102 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~ll~~~-------------~~~~~~~~~~~L 167 (529)
T 1jdh_A 102 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKT-------------NVKFLAITTDCL 167 (529)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCT-THHHHHHHHTHHHHHHHGGGCC-------------CHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-chHHHHHHcCCHHHHHHHHhcC-------------CHHHHHHHHHHH
Confidence 46667778887777777777777777776432 2344454554556666777653 123456666777
Q ss_pred HHhcC-CcccccCccc--ccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCCcc
Q 006622 97 AAFCR-VPEIASSEDM--VSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSR 173 (638)
Q Consensus 97 aaF~~-~pe~A~~~~~--v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~s~ 173 (638)
..++. .|+... .+ .+-+|.|++.+...+++.....+..+|..++ ..++....+++.|+++.+...+.. ....
T Consensus 168 ~~la~~~~~~~~--~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~g~~~~L~~ll~~--~~~~ 242 (529)
T 1jdh_A 168 QILAYGNQESKL--IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS-VCSSNKPAIVEAGGMQALGLHLTD--PSQR 242 (529)
T ss_dssp HHHHTTCHHHHH--HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHT-TSTTHHHHHHHTTHHHHHHTTTTS--SCHH
T ss_pred HHHHhCCHHHHH--HHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHh-cCcccHHHHHHCCCHHHHHHHHhC--CChH
Confidence 77776 344321 11 1458999999987777666677888999997 589999999999999997444331 2223
Q ss_pred hHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhhhHHHHhhcCCCcchh
Q 006622 174 LMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWS 253 (638)
Q Consensus 174 ~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~~~~~~~~~~l~~~~~~~W~ 253 (638)
-...|+..|..+-.... . .......++.+.+-......+.+..++..|..+-... +..... .+.
T Consensus 243 ~~~~a~~~L~~l~~~~~-~------~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~~~~--------~~~ 306 (529)
T 1jdh_A 243 LVQNCLWTLRNLSDAAT-K------QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN-YKNKMM--------VCQ 306 (529)
T ss_dssp HHHHHHHHHHHHHTTCT-T------CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC-HHHHHH--------HHH
T ss_pred HHHHHHHHHHHHhcCCh-h------hHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHHHH--------HHH
Confidence 34556666666554331 1 1112355666666555556677788888888885543 111111 111
Q ss_pred HHHHHHHHHHHhcC-CChhhhhhHHHHHHHH
Q 006622 254 MYMRVGVVAILQNR-VAPAEKLQALILAESI 283 (638)
Q Consensus 254 ~~ir~GL~~IL~sk-v~~~qR~~aL~Laa~l 283 (638)
......|..+|++. -.+.-|.+|+.....+
T Consensus 307 ~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl 337 (529)
T 1jdh_A 307 VGGIEALVRTVLRAGDREDITEPAICALRHL 337 (529)
T ss_dssp TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 12334555566553 2355566666655554
No 25
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=95.33 E-value=0.19 Score=54.92 Aligned_cols=153 Identities=16% Similarity=0.124 Sum_probs=100.9
Q ss_pred HHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHH
Q 006622 18 LDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLA 97 (638)
Q Consensus 18 l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLa 97 (638)
+..-+++|++.+++-+-.+.-.+..+....|.+.+..|-++=|.+.|-+||... . ....+.-|+..|.
T Consensus 245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s---~---------~~~v~~~A~~aL~ 312 (458)
T 3nmz_A 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV---K---------KESTLKSVLSALW 312 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTC---C---------SHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcC---C---------CHHHHHHHHHHHH
Confidence 555666777666666666666666665544555666777766667777766542 0 1234556777777
Q ss_pred HhcC-CcccccCccc---ccchhHHHHhhhccccc---chHHHHHHHHHHHHh---cccchhhHHhhcCchHHHHHHHhc
Q 006622 98 AFCR-VPEIASSEDM---VSKVPPILELMLKESGT---SILEECYEFLYLVTN---ATGDGVTTLYESGGMKVLAFQMST 167 (638)
Q Consensus 98 aF~~-~pe~A~~~~~---v~rIP~l~~~l~~~~~~---~~~~d~~~~L~~ia~---s~~~G~~~l~~~g~v~~l~~~i~~ 167 (638)
.++. .++.- +++ .+-||.|++.+...++. .+..+|.-+|..++. ..++..+.+++.|+++.+...+.
T Consensus 313 nLs~~~~~nk--~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~- 389 (458)
T 3nmz_A 313 NLSAHCTENK--ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK- 389 (458)
T ss_dssp HHHHHCHHHH--HHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSS-
T ss_pred HHccCCHHHH--HHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHc-
Confidence 7776 44432 333 35789999999876654 467889999988863 48888999999999999854443
Q ss_pred ccCCc-chHHHHHHHHHHHHh
Q 006622 168 FADGS-RLMELAIRLLQLMLS 187 (638)
Q Consensus 168 ~~~~s-~~~e~Al~LL~~LL~ 187 (638)
.++ ...+.|...|..+-.
T Consensus 390 --~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 390 --SHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp --CSCHHHHHHHHHHHHHHHS
T ss_pred --CCChHHHHHHHHHHHHHHc
Confidence 233 335677777777653
No 26
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=94.94 E-value=0.96 Score=52.98 Aligned_cols=239 Identities=14% Similarity=0.118 Sum_probs=151.1
Q ss_pred cHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHH
Q 006622 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVL 96 (638)
Q Consensus 17 ~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvL 96 (638)
.+.--+++|++.+..-|.-+.-.+.++. .|.+.+..|.++=+.+.|-+||+++. ..-+..|...|
T Consensus 496 aVp~LV~LL~s~s~~vqe~Aa~aL~NLA--~d~~~r~~Vv~~Gaip~Lv~LL~s~~-------------~~~k~~Aa~AL 560 (810)
T 3now_A 496 ITTALCALAKTESHNSQELIARVLNAVC--GLKELRGKVVQEGGVKALLRMALEGT-------------EKGKRHATQAL 560 (810)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHH--TSHHHHHHHHHTTHHHHHHHHHHSSC-------------HHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHCCCHHHHHHHHccCC-------------HHHHHHHHHHH
Confidence 3556678888887777777777788886 46667788888866799999999861 13467777778
Q ss_pred HHhc--CCcccccC-cccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCCcc
Q 006622 97 AAFC--RVPEIASS-EDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSR 173 (638)
Q Consensus 97 aaF~--~~pe~A~~-~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~s~ 173 (638)
+-+| .+|+.+.. ....+-||.|++.+...++.....+++.+|..++...++.++.+++.|+++.+..-+. .+...
T Consensus 561 ~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~--s~~~~ 638 (810)
T 3now_A 561 ARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM--EDHLY 638 (810)
T ss_dssp HHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH--SCCTT
T ss_pred HHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc--CCCHH
Confidence 7766 47877643 3456789999999874433333358999999997433566888999999999855444 23444
Q ss_pred hHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhhhHHHHhhcCCCcchh
Q 006622 174 LMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWS 253 (638)
Q Consensus 174 ~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~~~~~~~~~~l~~~~~~~W~ 253 (638)
-...|...|..|......-....+... .++.|-.-........|-+++..|+.+-... +....... ....|.
T Consensus 639 Vq~~A~~~L~NLa~~~~~~~~~v~~~g----~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s-~~~~~~ii---~~~g~I 710 (810)
T 3now_A 639 LTRAAAQCLCNLVMSEDVIKMFEGNND----RVKFLALLCEDEDEETATACAGALAIITSVS-VKCCEKIL---AIASWL 710 (810)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHSSSS----HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHC-HHHHHHHH---TSTTHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHhccC----cHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC-HHHHHHHH---HHcCCH
Confidence 567899999988775311001111111 2233333233344567788888888877632 11111111 113443
Q ss_pred HHHHHHHHHHHhcCCChhhhhhHHHHHHHHHh
Q 006622 254 MYMRVGVVAILQNRVAPAEKLQALILAESIVS 285 (638)
Q Consensus 254 ~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~ 285 (638)
.-|..+|++. ..+-|..|+....++..
T Consensus 711 ----~~Lv~LL~s~-d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 711 ----DILHTLIANP-SPAVQHRGIVIILNMIN 737 (810)
T ss_dssp ----HHHHHHHTCS-SHHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHCCC-CHHHHHHHHHHHHHHHh
Confidence 3455667764 55666667766666655
No 27
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=94.54 E-value=0.14 Score=57.86 Aligned_cols=144 Identities=13% Similarity=0.132 Sum_probs=107.0
Q ss_pred CCCCCCCCCCccHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcch
Q 006622 6 HSQPEESAPSPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENR 85 (638)
Q Consensus 6 ~~~p~~~~~~~~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~ 85 (638)
++..++.-++..+...+++|++.+++-++.+..-+++++.. +.+..+.|.++=|...|-+||+++ .
T Consensus 38 ~~~~~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~-~~~~k~~V~~~G~Ip~LV~LL~s~-------------~ 103 (584)
T 3l6x_A 38 GGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYR-NDKVKTDVRKLKGIPVLVGLLDHP-------------K 103 (584)
T ss_dssp --CCCCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHGGGCS-------------S
T ss_pred cCCCCCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcC-ChHHHHHHHHcCCcHHHHHHHCCC-------------C
Confidence 34456667888999999999999988999888889999874 566678888887789999999985 2
Q ss_pred HHHHHHHHHHHHHhcC--CcccccCcccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHH
Q 006622 86 DAYLQLSVTVLAAFCR--VPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAF 163 (638)
Q Consensus 86 ~~~~~LavsvLaaF~~--~pe~A~~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~ 163 (638)
..-+.-|+..|..++. +++.-..=-=.+-||.|++.+....+..+.+.+..+|..++ ..++....+++ ++++.|..
T Consensus 104 ~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS-~~~~~k~~I~~-~alp~Lv~ 181 (584)
T 3l6x_A 104 KEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLS-SHDSIKMEIVD-HALHALTD 181 (584)
T ss_dssp HHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHT-TSGGGHHHHHH-HTHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHh-CCchhhHHHHh-ccHHHHHH
Confidence 4567778888888886 24432100112558999999987655555688888999997 58887777775 56888744
Q ss_pred HH
Q 006622 164 QM 165 (638)
Q Consensus 164 ~i 165 (638)
-+
T Consensus 182 LL 183 (584)
T 3l6x_A 182 EV 183 (584)
T ss_dssp HT
T ss_pred HH
Confidence 33
No 28
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=93.93 E-value=0.17 Score=50.67 Aligned_cols=134 Identities=10% Similarity=0.144 Sum_probs=96.8
Q ss_pred CCCCccHHHHHHhcccCCc--hhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHH
Q 006622 12 SAPSPSLDDCLKLLKGERD--EQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYL 89 (638)
Q Consensus 12 ~~~~~~l~~cl~lLk~~~D--~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~ 89 (638)
.+...++...+++|++.++ .-++.+..-++.++. ++.+..+.|.++=|.+.|-+||+++ ...-+
T Consensus 4 ~~~~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~-~~~~~r~~I~~~G~Ip~LV~lL~s~-------------~~~vq 69 (233)
T 3tt9_A 4 ADMEMTLERAVSMLEADHMLPSRISAAATFIQHECF-QKSEARKRVNQLRGILKLLQLLKVQ-------------NEDVQ 69 (233)
T ss_dssp SCCCCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHTTHHHHHHHGGGCC-------------CHHHH
T ss_pred cchhccHHHHHHHhCCCCchHHHHHHHHHHHHHHHc-CCcHHHHHHHHcCCHHHHHHHHcCC-------------CHHHH
Confidence 3456689999999999876 445666667777776 3566677888887779999999885 23466
Q ss_pred HHHHHHHHHhcC-CcccccCcccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHH
Q 006622 90 QLSVTVLAAFCR-VPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVL 161 (638)
Q Consensus 90 ~LavsvLaaF~~-~pe~A~~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l 161 (638)
.-|+..|..++. .++--..=--.+-||.|++.+..+.+..+.+.+.-+|..++ +.++....+.+. +++.|
T Consensus 70 ~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS-~~~~~k~~i~~~-~i~~L 140 (233)
T 3tt9_A 70 RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLS-SNDKLKNLMITE-ALLTL 140 (233)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-TSGGGHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHH-cChhhHHHHHhc-cHHHH
Confidence 778888888886 45432111113568999999986555555688888999997 588887777764 57776
No 29
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=93.82 E-value=1.7 Score=50.08 Aligned_cols=139 Identities=11% Similarity=0.112 Sum_probs=98.8
Q ss_pred CCccHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHH
Q 006622 14 PSPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSV 93 (638)
Q Consensus 14 ~~~~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lav 93 (638)
....+...+++|+..+.+-|-.+...+.++..+ +.+..+.+.++-|.+.|-++|.... +...-+.-|+
T Consensus 397 ~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~-----------~~~~v~~~Al 464 (780)
T 2z6g_A 397 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-NYKNKMMVCQVGGIEALVRTVLRAG-----------DREDITEPAI 464 (780)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-CHHHHHHHHTTTHHHHHHHHHHHHT-----------TCHHHHHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHHccC-----------CHHHHHHHHH
Confidence 445677888889888888888888888999875 4455677777777788888887631 1224556677
Q ss_pred HHHHHhcC-Ccccc-cCccc--ccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHH
Q 006622 94 TVLAAFCR-VPEIA-SSEDM--VSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQM 165 (638)
Q Consensus 94 svLaaF~~-~pe~A-~~~~~--v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i 165 (638)
..|..++. .|+.. ....+ ..-||.|++.+...++..+...|+.+|..++ ..++.+..+.+.|+++.+...+
T Consensus 465 ~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL 539 (780)
T 2z6g_A 465 CALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA-LCPANHAPLREQGAIPRLVQLL 539 (780)
T ss_dssp HHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHH-SSHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHh-cCHHHHHHHHHCCCHHHHHHHH
Confidence 77777775 44311 00011 2348999999987766567899999999997 5788888889999999875444
No 30
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=93.61 E-value=3.2 Score=45.05 Aligned_cols=199 Identities=12% Similarity=0.109 Sum_probs=109.3
Q ss_pred HHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhc
Q 006622 21 CLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAAFC 100 (638)
Q Consensus 21 cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLaaF~ 100 (638)
.+.+|++.+..-|-.++.-+.++.. ++.+....|.++=+..-|-+||.... .......++.-+...|+.+|
T Consensus 167 Lv~LL~s~~~~v~e~A~~aL~nLa~-~~~~~r~~i~~~g~i~~Ll~lL~~~~--------~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 167 FISLLASPHAHISEQAVWALGNIAG-AGSAFRDLVIKHGAIDPLLALLAVPD--------LSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTCHHHHHHTTCSSC--------GGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhc-cCHHHHHHHHHcCCcHHHHHHHhccc--------hhHhHHHHHHHHHHHHHHHH
Confidence 3344444433333333333333332 12233334444444455556665431 11224456777888889999
Q ss_pred CCcccccCc-ccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCCcchHHHHH
Q 006622 101 RVPEIASSE-DMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAI 179 (638)
Q Consensus 101 ~~pe~A~~~-~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~s~~~e~Al 179 (638)
+..+-...- .+-.-+|.|+..+...+ ..+..+++.+|..++...++-.+.+++.|+++.+..-+. .....-...|+
T Consensus 238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~-~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~--~~~~~v~~~a~ 314 (529)
T 3tpo_A 238 RNKNPAPPLDAVEQILPTLVRLLHHND-PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG--ATELPIVTPAL 314 (529)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT--CSCHHHHHHHH
T ss_pred hcccchhhHHHHhhHHHHHHHHhcCCc-HHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc--CCChhHHHHHH
Confidence 855444322 23345788988886544 445689999998886434445566779999999855443 23334456788
Q ss_pred HHHHHHHhccccccccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhh
Q 006622 180 RLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSN 235 (638)
Q Consensus 180 ~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~~ 235 (638)
..|..+.+.........-+. ..++.+..-........|-++|..|..+....
T Consensus 315 ~aL~nl~~~~~~~~~~i~~~----g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~ 366 (529)
T 3tpo_A 315 RAIGNIVTGTDEQTQKVIDA----GALAVFPSLLTNPKTNIQKEATWTMSNITAGR 366 (529)
T ss_dssp HHHHHHTTSCHHHHHHHHHT----TGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHccchHHHHHHhhc----ccHHHHHHHHcCCCHHHHHHHHHHHHHHhccc
Confidence 88887765431100000001 12233333344556677888888888877654
No 31
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=93.56 E-value=0.55 Score=50.46 Aligned_cols=156 Identities=13% Similarity=0.133 Sum_probs=111.0
Q ss_pred ccHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHh-cCCCCCCCCCCCCcchHHHHHHHHH
Q 006622 16 PSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLR-TGLGKGINSGNSSENRDAYLQLSVT 94 (638)
Q Consensus 16 ~~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~-T~~~~~~~~~~~~~~~~~~~~Lavs 94 (638)
..+..-+++|++.+.+-++.+.--++++... +.+....|.++=|.+.|-+||+ ++ ....+.-|+.
T Consensus 44 g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~-~~~~k~~i~~~G~i~~Lv~lL~~~~-------------~~~~~~~a~~ 109 (457)
T 1xm9_A 44 GGICKLVDLLRSPNQNVQQAAAGALRNLVFR-STTNKLETRRQNGIREAVSLLRRTG-------------NAEIQKQLTG 109 (457)
T ss_dssp THHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHTTCHHHHHHHHTTCC-------------CHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhhCC-------------CHHHHHHHHH
Confidence 3577889999988888889999999999884 4566777888878899999998 53 2356778889
Q ss_pred HHHHhcCCcccccCcccccchhHHHHhhhc--------c-------cccchHHHHHHHHHHHHhcccchhhHHhhc-Cch
Q 006622 95 VLAAFCRVPEIASSEDMVSKVPPILELMLK--------E-------SGTSILEECYEFLYLVTNATGDGVTTLYES-GGM 158 (638)
Q Consensus 95 vLaaF~~~pe~A~~~~~v~rIP~l~~~l~~--------~-------~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~-g~v 158 (638)
.|..+|..|+.- ..=+-+-||.|++.+.. . .+..+...|.-+|..++ ..++.++.+.+. |++
T Consensus 110 aL~nLa~~~~~~-~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs-~~~~~~~~i~~~~g~i 187 (457)
T 1xm9_A 110 LLWNLSSTDELK-EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLS-SADAGRQTMRNYSGLI 187 (457)
T ss_dssp HHHHHHTSSSTH-HHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHT-TSHHHHHHHTTSTTHH
T ss_pred HHHHHhcCHHhH-HHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHc-cCHHHHHHHHHcCCCH
Confidence 999999875532 11111678999999942 1 23456678999999997 468888888887 999
Q ss_pred HHHHHHHhcc----cCCcchHHHHHHHHHHHHh
Q 006622 159 KVLAFQMSTF----ADGSRLMELAIRLLQLMLS 187 (638)
Q Consensus 159 ~~l~~~i~~~----~~~s~~~e~Al~LL~~LL~ 187 (638)
+.|..-+..- .......+.|+.+|..|-.
T Consensus 188 ~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~ 220 (457)
T 1xm9_A 188 DSLMAYVQNCVAASRCDDKSVENCMCVLHNLSY 220 (457)
T ss_dssp HHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhccccCCchHHHHHHHHHHHhccc
Confidence 9986555420 0122345666666655543
No 32
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=92.45 E-value=1 Score=48.86 Aligned_cols=232 Identities=12% Similarity=0.102 Sum_probs=121.9
Q ss_pred HHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHH
Q 006622 18 LDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLA 97 (638)
Q Consensus 18 l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLa 97 (638)
+..-+++|++.+++-|-.++--+.++.. ++.+....+.++=+...|-+||.... .......++.-+...|+
T Consensus 145 Ip~Lv~lL~s~~~~v~e~A~~aL~nLa~-d~~~~r~~v~~~G~i~~Ll~lL~~~~--------~~~~~~~~~~~a~~~L~ 215 (510)
T 3ul1_B 145 IPAFISLLASPHAHISEQAVWALGNIAG-DGSAFRDLVIKHGAIDPLLALLAVPD--------LSTLACGYLRNLTWTLS 215 (510)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTCHHHHHHHTCSSC--------GGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHcCChHHHHHHHHhcc--------chhhhHHHHHHHHHHHH
Confidence 3344444554444444444444444432 12223334444445566777776541 11234456677788888
Q ss_pred HhcCCcccccCc-ccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCCcchHH
Q 006622 98 AFCRVPEIASSE-DMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLME 176 (638)
Q Consensus 98 aF~~~pe~A~~~-~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~s~~~e 176 (638)
.+|+..+-...- .+-.-+|.|+..+...+ ..+..+++.+|..++...++..+.+.+.|+++.+..-+. .....-..
T Consensus 216 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~-~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~ 292 (510)
T 3ul1_B 216 NLCRNKNPAPPLDAVEQILPTLVRLLHHND-PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG--ATELPIVT 292 (510)
T ss_dssp HHHCCCSSCCCHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT--CSCHHHHH
T ss_pred HHhhcccchhHHHHHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhc--CCChhhhh
Confidence 898855443222 23345788888886544 445689999998886434455566779999999855443 23333456
Q ss_pred HHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhhhHHHHhhcCCCcchhHHH
Q 006622 177 LAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWSMYM 256 (638)
Q Consensus 177 ~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~~~~~~~~~~l~~~~~~~W~~~i 256 (638)
.|+..|..+.+.........-+. ..++.+..-........|-++|..|..+.... +..... .+...+
T Consensus 293 ~al~aL~nl~~~~~~~~~~i~~~----g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~-~~~~~~--------v~~~g~ 359 (510)
T 3ul1_B 293 PALRAIGNIVTGTDEQTQKVIDA----GALAVFPSLLTNPKTNIQKEATWTMSNITAGR-QDQIQQ--------VVNHGL 359 (510)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHT----TGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSC-HHHHHH--------HHHTTH
T ss_pred HHHHHHHHhhcCCHHHHHHHhhc----cchHHHHHHhcCCCHHHHHHHHHHHHHHHcCc-HHHHHH--------HHhcCC
Confidence 67777777765431000000000 01111222223344566777888887776554 111110 111234
Q ss_pred HHHHHHHHhcCCChhhhh
Q 006622 257 RVGVVAILQNRVAPAEKL 274 (638)
Q Consensus 257 r~GL~~IL~skv~~~qR~ 274 (638)
..-|..+|++.-...++.
T Consensus 360 i~~Lv~lL~~~~~~v~~~ 377 (510)
T 3ul1_B 360 VPFLVGVLSKADFKTQKE 377 (510)
T ss_dssp HHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHH
Confidence 455666677764444333
No 33
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=91.57 E-value=4.9 Score=47.10 Aligned_cols=237 Identities=18% Similarity=0.118 Sum_probs=135.6
Q ss_pred HHHHHHhcccC--CchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCc-hhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHH
Q 006622 18 LDDCLKLLKGE--RDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGP-RFLDRLLRTGLGKGINSGNSSENRDAYLQLSVT 94 (638)
Q Consensus 18 l~~cl~lLk~~--~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~-~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lavs 94 (638)
+..|.++|.+. +++.+=-+.--+..+.. +.+....+-..-|+ +-|=.||+++ . ...+--|+.
T Consensus 379 v~~l~~lL~~~~~d~~v~~~AveaLayLS~--~~~vk~~lv~d~g~Ip~LV~LL~s~-----------d--~~i~~~al~ 443 (810)
T 3now_A 379 AEACRRFLIKPGKDKDIRRWAADGLAYLTL--DAECKEKLIEDKASIHALMDLARGG-----------N--QSCLYGVVT 443 (810)
T ss_dssp HHHHHHHHHCSSCCSSHHHHHHHHHHHHTT--SHHHHHHHHHCHHHHHHHHHHHHTT-----------C--GGGHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHhC--CcHHHHHHHHccchHHHHHHHhCCC-----------C--hHHHHHHHH
Confidence 66688888876 55444444444444443 34444443322222 3333444442 1 233456788
Q ss_pred HHHHhcCCcc----------ccc--C-----------cc-cc---------cchhHHHHhhhcccccchHHHHHHHHHHH
Q 006622 95 VLAAFCRVPE----------IAS--S-----------ED-MV---------SKVPPILELMLKESGTSILEECYEFLYLV 141 (638)
Q Consensus 95 vLaaF~~~pe----------~A~--~-----------~~-~v---------~rIP~l~~~l~~~~~~~~~~d~~~~L~~i 141 (638)
+|.-+++.+| +|. + ++ +. +-||.|+..+.+.+ ..+-+.|..+|..+
T Consensus 444 ~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s-~~vqe~Aa~aL~NL 522 (810)
T 3now_A 444 TFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTES-HNSQELIARVLNAV 522 (810)
T ss_dssp HHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCC-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCC-HHHHHHHHHHHHHH
Confidence 8888887432 111 0 01 11 34799999987644 45569999999999
Q ss_pred HhcccchhhHHhhcCchHHHHHHHhcccCCcchHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhhhhh-hh
Q 006622 142 TNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHN-AL 220 (638)
Q Consensus 142 a~s~~~G~~~l~~~g~v~~l~~~i~~~~~~s~~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~~~-~~ 220 (638)
| ..++.+..+++.|+++.|...+.. ......+.|..-|..|....+++..+.. +.....++.|........+ ..
T Consensus 523 A-~d~~~r~~Vv~~Gaip~Lv~LL~s--~~~~~k~~Aa~AL~nL~~~~~p~~~~~~--~~~~~aIppLv~LL~~~~~~l~ 597 (810)
T 3now_A 523 C-GLKELRGKVVQEGGVKALLRMALE--GTEKGKRHATQALARIGITINPEVSFSG--QRSLDVIRPLLNLLQQDCTALE 597 (810)
T ss_dssp H-TSHHHHHHHHHTTHHHHHHHHHHS--SCHHHHHHHHHHHHHHHHHSCHHHHTTT--HHHHHTHHHHHHTTSTTSCHHH
T ss_pred c-CCHHHHHHHHHCCCHHHHHHHHcc--CCHHHHHHHHHHHHHHhcCCChhhhhcc--hhhhcHHHHHHHHhCCCCcHHH
Confidence 8 688899999999999998655542 2334467788888877765543333211 1122355666554433322 34
Q ss_pred hHHHHHHHHHhhhhhhhhhHHHHhhcCCCcchhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHh
Q 006622 221 KFESLHLLTAVLSSNYSALLHEALRVMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVS 285 (638)
Q Consensus 221 Kfe~l~~L~~lL~~~~~~~~~~~l~~~~~~~W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~ 285 (638)
+|++|..|.-+...... ...... ....| .-|..+|.+. .+.-|.+|+.+...|+.
T Consensus 598 ~~eAl~AL~NLa~~~d~-~~~~Ii---~aG~l-----~~Lv~LL~s~-~~~Vq~~A~~~L~NLa~ 652 (810)
T 3now_A 598 NFESLMALTNLASMNES-VRQRII---KEQGV-----SKIEYYLMED-HLYLTRAAAQCLCNLVM 652 (810)
T ss_dssp HHHHHHHHHHHTTSCHH-HHHHHH---HTTHH-----HHHHHHHHSC-CTTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCHH-HHHHHH---HcCCH-----HHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence 68898888888766411 110100 01223 4455666665 34456677776666653
No 34
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=91.46 E-value=6 Score=41.47 Aligned_cols=180 Identities=13% Similarity=0.115 Sum_probs=104.6
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHhcC-chhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhcCC--cccccCc
Q 006622 33 RLAGLLVVTKFCKGDDAVSLRKIYDAVG-PRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAAFCRV--PEIASSE 109 (638)
Q Consensus 33 kFvgLlLvtkl~~~~d~~~~~~v~~AiG-~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLaaF~~~--pe~A~~~ 109 (638)
|+.+.--+++++.+ +.+..+.|-..=| .+.|-+||+++ ....+.-|+..|..++.. ++.- .
T Consensus 101 q~~Aa~aL~nLa~~-~~~~k~~i~~~~GaIp~LV~LL~s~-------------~~~v~~~A~~aL~nLs~~~~~~~k--~ 164 (354)
T 3nmw_A 101 RRYAGMALTNLTFG-DVANKATLCSMKGCMRALVAQLKSE-------------SEDLQQVIASVLRNLSWRADVNSK--K 164 (354)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHHHCHHHHHHHHHGGGCS-------------CHHHHHHHHHHHHHHHTTCCHHHH--H
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHcCCcHHHHHHHHCCC-------------CHHHHHHHHHHHHHHhccCCHHHH--H
Confidence 44555556777764 3333444444456 68888999874 234556677778777753 3211 1
Q ss_pred ccc--cchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHh-hcCchHHHHHHHhcccCCc---chHHHHHHHHH
Q 006622 110 DMV--SKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLY-ESGGMKVLAFQMSTFADGS---RLMELAIRLLQ 183 (638)
Q Consensus 110 ~~v--~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~-~~g~v~~l~~~i~~~~~~s---~~~e~Al~LL~ 183 (638)
.++ +-||.|++.+.++.+..+...+..+|..++...++....+. ..|+++.|..-+.. .+.+ .-.+.|...|.
T Consensus 165 ~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~-~~~~~~~~v~~~A~~aL~ 243 (354)
T 3nmw_A 165 TLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY-RSQTNTLAIIESGGGILR 243 (354)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTC-CCSSSCCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhcc-CCCcccHHHHHHHHHHHH
Confidence 222 45899999987666666678899999999721445566776 78999998555442 2221 13566777776
Q ss_pred HHHhc--ccccccc-ccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhh
Q 006622 184 LMLSK--LSLEIIT-NDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLS 233 (638)
Q Consensus 184 ~LL~~--~~~~~~~-~~~~~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~ 233 (638)
.|-.. .+.+... ..+. ..++.|-..........|-+++..|..+-.
T Consensus 244 nLs~~~a~~~~~~~~i~~~----g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 292 (354)
T 3nmw_A 244 NVSSLIATNEDHRQILREN----NCLQTLLQHLKSHSLTIVSNACGTLWNLSA 292 (354)
T ss_dssp HHHHHHTTCHHHHHHHHTT----THHHHHHHHTTCSCHHHHHHHHHHHHHHTS
T ss_pred HHHhhccCCHHHHHHHHHc----CCHHHHHHHHcCCChHHHHHHHHHHHHHhC
Confidence 65531 1111110 0111 124444444444445667777877777753
No 35
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=91.06 E-value=1.4 Score=44.02 Aligned_cols=157 Identities=13% Similarity=0.098 Sum_probs=105.8
Q ss_pred cHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHH
Q 006622 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVL 96 (638)
Q Consensus 17 ~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvL 96 (638)
.+..-+++|++.+++-++.+.--++.+.. ++.+....|-++=|.+-|-+||+++ . ....+.-|++.|
T Consensus 53 ~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~-~~~~nk~~I~~~GaI~~Lv~lL~~~---~---------~~~~~e~a~~aL 119 (233)
T 3tt9_A 53 GILKLLQLLKVQNEDVQRAVCGALRNLVF-EDNDNKLEVAELNGVPRLLQVLKQT---R---------DLETKKQITGLL 119 (233)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHHHHHHC---C---------CHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHcCCHHHHHHHHccC---C---------CHHHHHHHHHHH
Confidence 46677889998888888888888888876 3456677888887779999999853 0 234567778888
Q ss_pred HHhcCCcccccCccc-ccchhHHHHhhh--c-c------------cccchHHHHHHHHHHHHhcccchhhHHhhc-CchH
Q 006622 97 AAFCRVPEIASSEDM-VSKVPPILELML--K-E------------SGTSILEECYEFLYLVTNATGDGVTTLYES-GGMK 159 (638)
Q Consensus 97 aaF~~~pe~A~~~~~-v~rIP~l~~~l~--~-~------------~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~-g~v~ 159 (638)
..++..++.- +.+ -+-||.|++.+. . + .+..+...+-.||..++.+.+++++++.+. |.|+
T Consensus 120 ~nLS~~~~~k--~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~ 197 (233)
T 3tt9_A 120 WNLSSNDKLK--NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLID 197 (233)
T ss_dssp HHHHTSGGGH--HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHH
T ss_pred HHHHcChhhH--HHHHhccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHH
Confidence 8888765542 111 124788887653 1 1 244667888899999974467899999865 6788
Q ss_pred HHHHHHhcc----cCCcchHHHHHHHHHHHHhc
Q 006622 160 VLAFQMSTF----ADGSRLMELAIRLLQLMLSK 188 (638)
Q Consensus 160 ~l~~~i~~~----~~~s~~~e~Al~LL~~LL~~ 188 (638)
.|..-+..- .......|-|+-+|-.|-++
T Consensus 198 ~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 198 SLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 886544321 11223567777777666444
No 36
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=90.61 E-value=1.9 Score=48.58 Aligned_cols=159 Identities=18% Similarity=0.156 Sum_probs=108.6
Q ss_pred cHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHH
Q 006622 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVL 96 (638)
Q Consensus 17 ~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvL 96 (638)
.+..-+++|++.+.+-++.+.--+.++...++.+....|-++=|..-|-+||+++. ....+.-|...|
T Consensus 91 ~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~------------~~~~~e~aa~aL 158 (584)
T 3l6x_A 91 GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKAR------------DMDLTEVITGTL 158 (584)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCC------------SHHHHHHHHHHH
T ss_pred CcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCC------------CHHHHHHHHHHH
Confidence 46778899999998999999999999998766778888888877799999999841 234677788888
Q ss_pred HHhcCCcccccCcccccchhHHHHhhh-----------------cccccchHHHHHHHHHHHHhcccchhhHHhhcC-ch
Q 006622 97 AAFCRVPEIASSEDMVSKVPPILELML-----------------KESGTSILEECYEFLYLVTNATGDGVTTLYESG-GM 158 (638)
Q Consensus 97 aaF~~~pe~A~~~~~v~rIP~l~~~l~-----------------~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g-~v 158 (638)
..++..|+.-. .=+-+-||.|++.+. ..+++.+...|..||..++...+++++.+.+.+ .+
T Consensus 159 ~nLS~~~~~k~-~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli 237 (584)
T 3l6x_A 159 WNLSSHDSIKM-EIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLV 237 (584)
T ss_dssp HHHTTSGGGHH-HHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHH
T ss_pred HHHhCCchhhH-HHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcH
Confidence 88888665321 001234899999762 122456778899999999755667899998754 45
Q ss_pred HHHHHHHhcc----cCCcchHHHHHHHHHHHHhc
Q 006622 159 KVLAFQMSTF----ADGSRLMELAIRLLQLMLSK 188 (638)
Q Consensus 159 ~~l~~~i~~~----~~~s~~~e~Al~LL~~LL~~ 188 (638)
+.|...+..- .......+-|+-.|..|-.+
T Consensus 238 ~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~ 271 (584)
T 3l6x_A 238 DALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQ 271 (584)
T ss_dssp HHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcc
Confidence 6764444310 01223345555555554443
No 37
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=89.90 E-value=7.5 Score=42.35 Aligned_cols=179 Identities=13% Similarity=0.130 Sum_probs=105.0
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHhcC-chhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhcCC--cccccCc
Q 006622 33 RLAGLLVVTKFCKGDDAVSLRKIYDAVG-PRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAAFCRV--PEIASSE 109 (638)
Q Consensus 33 kFvgLlLvtkl~~~~d~~~~~~v~~AiG-~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLaaF~~~--pe~A~~~ 109 (638)
++-+.-.+++++.+++ +....|...-| .+.|-+||+++ ....+.-|+..|..++.. ++.- .
T Consensus 217 ~~~Aa~aL~nLa~~~~-~~k~~i~~~~GaIp~LV~LL~s~-------------~~~v~~~A~~aL~nLs~~~~~~~k--~ 280 (458)
T 3nmz_A 217 RRYAGMALTNLTFGDV-ANKATLCSMKGCMRALVAQLKSE-------------SEDLQQVIASVLRNLSWRADVNSK--K 280 (458)
T ss_dssp HHHHHHHHHHHHTTCH-HHHHHHHHCHHHHHHHHHGGGCS-------------CHHHHHHHHHHHHHHTSSCCHHHH--H
T ss_pred HHHHHHHHHHHhCCCc-ccHHHHHHcCCcHHHHHHHHhCC-------------CHHHHHHHHHHHHHHhcCCCHHHH--H
Confidence 4555556677776433 33334444445 58888899874 224456677777777752 3211 1
Q ss_pred ccc--cchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHh-hcCchHHHHHHHhcccCCc---chHHHHHHHHH
Q 006622 110 DMV--SKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLY-ESGGMKVLAFQMSTFADGS---RLMELAIRLLQ 183 (638)
Q Consensus 110 ~~v--~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~-~~g~v~~l~~~i~~~~~~s---~~~e~Al~LL~ 183 (638)
.++ +-||.|++.+.++++..+...+..+|..++...++.+..+. ..|+++.|..-+.. ...+ .-.+.|...|.
T Consensus 281 ~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~-~~~~~~~~v~~~A~~aL~ 359 (458)
T 3nmz_A 281 TLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY-RSQTNTLAIIESGGGILR 359 (458)
T ss_dssp HHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTC-CCSSSTTHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcC-CCCcchHHHHHHHHHHHH
Confidence 222 45899999977766666678899999999732556677776 79999998554432 2222 13566777776
Q ss_pred HHHhc--cccccccccchhhHH--HHHHHHHHHHhhhhhhhhHHHHHHHHHhhh
Q 006622 184 LMLSK--LSLEIITNDYLSELS--TIVTVVAREFAVLHNALKFESLHLLTAVLS 233 (638)
Q Consensus 184 ~LL~~--~~~~~~~~~~~~~l~--~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~ 233 (638)
.|-.. .+.+ +.+.+. ..++.|-..........|-+++..|..+-.
T Consensus 360 nLs~~~a~~~~-----~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 360 NVSSLIATNED-----HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHHHHHTTCHH-----HHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHS
T ss_pred HHHhcccCCHH-----HHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHc
Confidence 65431 1111 111111 124444444444445677788888877753
No 38
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=85.79 E-value=25 Score=33.53 Aligned_cols=178 Identities=11% Similarity=0.173 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHhcC-CcccccCcccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHh
Q 006622 88 YLQLSVTVLAAFCR-VPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMS 166 (638)
Q Consensus 88 ~~~LavsvLaaF~~-~pe~A~~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~ 166 (638)
.+.=|+.-|..+.. .|++. .+++..-++.|...+.+..+..+...++++|..++.......+... ...++.+...+.
T Consensus 31 ~R~~a~~~L~~l~~~~~~~~-~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~-~~ilp~ll~~l~ 108 (242)
T 2qk2_A 31 LRKESLEVLEKLLTDHPKLE-NGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA-SACVPSLLEKFK 108 (242)
T ss_dssp HHHHHHHHHHHHHHHCSSBC-CCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHccCCCCC-CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHc
Confidence 34445555555554 25554 2344445667777775556666778999999888632222211211 124455433332
Q ss_pred cccCCcchHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhhhHHHHhhc
Q 006622 167 TFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRV 246 (638)
Q Consensus 167 ~~~~~s~~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~~~~~~~~~~l~~ 246 (638)
. ....-.+.|...|..++... .+..+++.+...+.......|.+++.+|..++....+.
T Consensus 109 d--~~~~vr~~a~~aL~~~~~~~-----------~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~-------- 167 (242)
T 2qk2_A 109 E--KKPNVVTALREAIDAIYAST-----------SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPT-------- 167 (242)
T ss_dssp C--CCHHHHHHHHHHHHHHHTTS-----------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGG--------
T ss_pred C--CCHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCC--------
Confidence 1 22233466677776666543 14567777877777666678999999999988775111
Q ss_pred CCCcchhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhcCC
Q 006622 247 MPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGE 289 (638)
Q Consensus 247 ~~~~~W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~G~ 289 (638)
.........+...|...|..+ .++-|..|......+...+|.
T Consensus 168 ~~~~~~l~~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 168 ALNKKLLKLLTTSLVKTLNEP-DPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp GCCHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHHHHCH
T ss_pred CccHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHcCH
Confidence 012233456778888888654 456799999999999999984
No 39
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=83.00 E-value=78 Score=36.95 Aligned_cols=238 Identities=8% Similarity=0.061 Sum_probs=134.6
Q ss_pred HhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhc--
Q 006622 23 KLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAAFC-- 100 (638)
Q Consensus 23 ~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLaaF~-- 100 (638)
.+|++.++..|=.+.-.+-++. .|.+.+..+.+.=|.+.|-++|.++... + + .-+..|...|+-..
T Consensus 464 ~Ll~S~s~~~re~A~~aL~nLS--~d~~~R~~lvqqGal~~LL~lL~s~~~~-------~-~--~~k~~AA~ALArLlis 531 (778)
T 3opb_A 464 REMHNLSPNCKQQVVRIIYNIT--RSKNFIPQLAQQGAVKIILEYLANKQDI-------G-E--PIRILGCRALTRMLIF 531 (778)
T ss_dssp HHGGGSCHHHHHHHHHHHHHHH--TSGGGHHHHHHTTHHHHHHHHTTCC----------C-C--HHHHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHCCCHHHHHHHHhcCCCc-------c-h--HHHHHHHHHHHHHHhc
Confidence 3444444444444434444443 3455666777765568888998886211 1 1 23455555565554
Q ss_pred CCccccc-CcccccchhHHHHhhhcccccc-------------hHHHHHHHHHHHHhccc-----chhhHHhhc-CchHH
Q 006622 101 RVPEIAS-SEDMVSKVPPILELMLKESGTS-------------ILEECYEFLYLVTNATG-----DGVTTLYES-GGMKV 160 (638)
Q Consensus 101 ~~pe~A~-~~~~v~rIP~l~~~l~~~~~~~-------------~~~d~~~~L~~ia~s~~-----~G~~~l~~~-g~v~~ 160 (638)
.+|+++- .....+-||.|++.+..+++.. ..-+|+-+|+.+| +.+ +.++.+++. |+++.
T Consensus 532 ~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLA-s~~~n~~E~~r~~Ii~~~ga~~~ 610 (778)
T 3opb_A 532 TNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLA-SSETSDGEEVCKHIVSTKVYWST 610 (778)
T ss_dssp SCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHSHHHHHH
T ss_pred CCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHh-cCCcccchHHHHHHHHhcCHHHH
Confidence 5898873 2344689999999997322211 1458888888897 465 346778884 99999
Q ss_pred HHHHHhcccCCcchHHHHHHHHHHHHhcccc--cccc-ccchh---hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhh
Q 006622 161 LAFQMSTFADGSRLMELAIRLLQLMLSKLSL--EIIT-NDYLS---ELSTIVTVVAREFAVLHNALKFESLHLLTAVLSS 234 (638)
Q Consensus 161 l~~~i~~~~~~s~~~e~Al~LL~~LL~~~~~--~~~~-~~~~~---~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~ 234 (638)
+-.-+. .++..-...|.+++..|...... ...- .+.+. .+..+|. +. .....+.|-.++-.|..+-..
T Consensus 611 L~~LL~--s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~-Ll---~s~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 611 IENLML--DENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVK-LL---QLSDVESQRAVAAIFANIATT 684 (778)
T ss_dssp HHHGGG--CSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHH-GG---GCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh--CCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHH-HH---cCCCHHHHHHHHHHHHHhcCC
Confidence 744443 34445567788999998875521 1121 11111 1333332 22 233445666666666665433
Q ss_pred hhhhhHHHHhhcCCCcchhHHHHHHHHHHHhcC-CChhhhhhHHHHHHHHHhhc
Q 006622 235 NYSALLHEALRVMPDSKWSMYMRVGVVAILQNR-VAPAEKLQALILAESIVSIK 287 (638)
Q Consensus 235 ~~~~~~~~~l~~~~~~~W~~~ir~GL~~IL~sk-v~~~qR~~aL~Laa~ll~l~ 287 (638)
. +.-.... ... ......+..+|+.- -.+.-|+.++.+..+|....
T Consensus 685 ~-~~ia~~l----l~~---~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 685 I-PLIAKEL----LTK---KELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp C-HHHHHHH----TTC---HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred C-hHHHHHH----HHc---cccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence 3 1111110 111 12334556667764 46777888999999998744
No 40
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=76.89 E-value=59 Score=31.85 Aligned_cols=206 Identities=11% Similarity=0.107 Sum_probs=119.0
Q ss_pred HHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHH-hc-CCccccc-CcccccchhHHHHhhhcccccchH
Q 006622 55 IYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAA-FC-RVPEIAS-SEDMVSKVPPILELMLKESGTSIL 131 (638)
Q Consensus 55 v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLaa-F~-~~pe~A~-~~~~v~rIP~l~~~l~~~~~~~~~ 131 (638)
|.+.++..|..+| .++ +- .++. =|+.-|+. ++ ..|++.. +.++..-+..|...+.+.+...++
T Consensus 13 i~~kl~~~f~~~l-~s~--~w-------~eRk----~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~ 78 (249)
T 2qk1_A 13 ILDKLPKDFQERI-TSS--KW-------KDRV----EALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAV 78 (249)
T ss_dssp CGGGSCTTHHHHH-TCS--SH-------HHHH----HHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHH
T ss_pred hhhhCChhHHHHh-hcC--CH-------HHHH----HHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHH
Confidence 4556777888776 332 11 1122 23333445 44 3567663 334445567788888666666677
Q ss_pred HHHHHHHHHHHhccc-chhh-HHhhcCchHHHHHHHhcccCCcchH-HHHHHHHHHHHhccccccccccchhhHHHHHHH
Q 006622 132 EECYEFLYLVTNATG-DGVT-TLYESGGMKVLAFQMSTFADGSRLM-ELAIRLLQLMLSKLSLEIITNDYLSELSTIVTV 208 (638)
Q Consensus 132 ~d~~~~L~~ia~s~~-~G~~-~l~~~g~v~~l~~~i~~~~~~s~~~-e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~ 208 (638)
..|++||..++.... ++.+ ..... .++.++..+. +....+ +.|-.-|..+....++.. .+ ..+..++..
T Consensus 79 ~~A~~al~~la~~l~~~~f~~~y~~~-llp~ll~~l~---dkk~~V~~aa~~al~~i~~~~~~~~---~~-~~l~~ll~~ 150 (249)
T 2qk1_A 79 ALAAQSVELICDKLKTPGFSKDYVSL-VFTPLLDRTK---EKKPSVIEAIRKALLTICKYYDPLA---SS-GRNEDMLKD 150 (249)
T ss_dssp HHHHHHHHHHHHHHCTTTSCHHHHHH-HHHHHHHGGG---CCCHHHHHHHHHHHHHHHHHSCTTC---TT-CTTHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccHHHHHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHccccc---cC-CcHHHHHHH
Confidence 899999988864222 2322 22222 4555544443 222223 555555666666553211 11 115567777
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHhhhhhhhhhHHHHhhcCCCcchh-HHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhc
Q 006622 209 VAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWS-MYMRVGVVAILQNRVAPAEKLQALILAESIVSIK 287 (638)
Q Consensus 209 lA~~F~~~~~~~Kfe~l~~L~~lL~~~~~~~~~~~l~~~~~~~W~-~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~ 287 (638)
|...+.+..-..|-+++.+|..++... +.+... -.... ..+...|...+... .+.=|..|......++.++
T Consensus 151 l~~~l~~k~~~vk~~al~~l~~~~~~~-~~~~~~------l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~~v 222 (249)
T 2qk1_A 151 ILEHMKHKTPQIRMECTQLFNASMKEE-KDGYST------LQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIKIF 222 (249)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHC-CSCSHH------HHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHc-CCcchh------HHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh
Confidence 777666655578899999999999775 210000 00133 45556666666443 7788999999999999999
Q ss_pred CCC
Q 006622 288 GEE 290 (638)
Q Consensus 288 G~~ 290 (638)
|.+
T Consensus 223 G~~ 225 (249)
T 2qk1_A 223 GMN 225 (249)
T ss_dssp CSG
T ss_pred CHH
Confidence 943
No 41
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=72.86 E-value=28 Score=39.82 Aligned_cols=213 Identities=13% Similarity=0.087 Sum_probs=121.5
Q ss_pred CCCCCCCCCCCccHHHHHHhcccC-CchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCc
Q 006622 5 SHSQPEESAPSPSLDDCLKLLKGE-RDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSE 83 (638)
Q Consensus 5 ~~~~p~~~~~~~~l~~cl~lLk~~-~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~ 83 (638)
.+.+|..|..++++++-..=|.+. -=+.|=+++.=++.+-+. -..+||..=+..|+.+-. .+..
T Consensus 10 ~~~~~~~qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~--------y~~~Vg~~~l~~li~~L~-------~d~~ 74 (651)
T 3grl_A 10 GQSAGPQHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKK--------YRLEVGIQAMEHLIHVLQ-------TDRS 74 (651)
T ss_dssp --------CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT--------TTTHHHHHTHHHHHHHHH-------SCTT
T ss_pred CCCCCCCCChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH--------hHHHhhhhhHHHHHHHHh-------cccc
Confidence 455666666677788777777765 466777888888888653 113444443444443320 0224
Q ss_pred chHHHHHHHHHHHHHhcCCcccc--------cC-------ccc---ccchhHHHHhhhcccccchHHHHHHHHHHHHhcc
Q 006622 84 NRDAYLQLSVTVLAAFCRVPEIA--------SS-------EDM---VSKVPPILELMLKESGTSILEECYEFLYLVTNAT 145 (638)
Q Consensus 84 ~~~~~~~LavsvLaaF~~~pe~A--------~~-------~~~---v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~ 145 (638)
|.+.-+..-=+++..||.+++-. .+ +.+ -+.||.|++.+. +.+.-+---++|+|..++.+.
T Consensus 75 D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~-~~df~vR~~alqlL~~L~~~r 153 (651)
T 3grl_A 75 DSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE-EFDFHVRWPGVKLLTSLLKQL 153 (651)
T ss_dssp CHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc-CccHHHHHHHHHHHHHHHhcC
Confidence 44444443344446677644311 00 111 245888999885 444444467799998887656
Q ss_pred cc-hhhHHh-hcCchHHHHHHHhcccCCcchHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhhhhhhhhHH
Q 006622 146 GD-GVTTLY-ESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFE 223 (638)
Q Consensus 146 ~~-G~~~l~-~~g~v~~l~~~i~~~~~~s~~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~~~~~Kfe 223 (638)
++ =++.++ ..++++++...+.. +...-...|+-+|..|......-+........|..++.-|..+-...++..--+
T Consensus 154 ~~~~Q~~Il~~p~gi~~Lv~lL~d--~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~D 231 (651)
T 3grl_A 154 GPQVQQIILVSPMGVSRLMDLLAD--SREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVED 231 (651)
T ss_dssp HHHHHHHHHHSTTHHHHHHGGGGC--SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHH
T ss_pred cHHHHHHHHhCcccHHHHHHHHhC--chHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHH
Confidence 55 577777 56999998554432 334445677877777766543223223334467777777777665555566677
Q ss_pred HHHHHHHhhhhh
Q 006622 224 SLHLLTAVLSSN 235 (638)
Q Consensus 224 ~l~~L~~lL~~~ 235 (638)
++.+|..++...
T Consensus 232 CL~ll~nLLr~N 243 (651)
T 3grl_A 232 CLILLQNLLKNN 243 (651)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhcC
Confidence 788888888765
No 42
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=69.74 E-value=22 Score=41.43 Aligned_cols=160 Identities=17% Similarity=0.176 Sum_probs=96.5
Q ss_pred hhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCC-cchHHHHHHHHHHHHhcccccc
Q 006622 115 VPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADG-SRLMELAIRLLQLMLSKLSLEI 193 (638)
Q Consensus 115 IP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~-s~~~e~Al~LL~~LL~~~~~~~ 193 (638)
||.|+..+...++ .+-..+.++|..++ ..++.+..+++.|+++.+...+..-... ......|.+-|..++...++..
T Consensus 459 Ip~Lv~Ll~S~s~-~~re~A~~aL~nLS-~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~ 536 (778)
T 3opb_A 459 ISFLKREMHNLSP-NCKQQVVRIIYNIT-RSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL 536 (778)
T ss_dssp HHHHHHHGGGSCH-HHHHHHHHHHHHHH-TSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHcCCCH-HHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH
Confidence 5888777755444 44688999999997 6899999999999999985554421111 1146789999999987664443
Q ss_pred ccccchhhHHHHHHHHHHHHhh-hhh-------------hhhHHHHHHHHHhhhhhhhhhHHHHhhcCCC--cchhHHHH
Q 006622 194 ITNDYLSELSTIVTVVAREFAV-LHN-------------ALKFESLHLLTAVLSSNYSALLHEALRVMPD--SKWSMYMR 257 (638)
Q Consensus 194 ~~~~~~~~l~~lv~~lA~~F~~-~~~-------------~~Kfe~l~~L~~lL~~~~~~~~~~~l~~~~~--~~W~~~ir 257 (638)
.-..+. ....++.|-..... ... --||+++..|+-+-+..+.. -++..+.... ..|
T Consensus 537 ~f~~~~--~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~-~E~~r~~Ii~~~ga~----- 608 (778)
T 3opb_A 537 IFKKYS--ALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSD-GEEVCKHIVSTKVYW----- 608 (778)
T ss_dssp HSSSSC--STTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHH-HHHHHHHHHHSHHHH-----
T ss_pred HcCCCc--cccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCccc-chHHHHHHHHhcCHH-----
Confidence 322211 11344445544331 111 12899998888876653110 0000000111 244
Q ss_pred HHHHHHHhcCCChhhhhhHHHHHHHHHh
Q 006622 258 VGVVAILQNRVAPAEKLQALILAESIVS 285 (638)
Q Consensus 258 ~GL~~IL~skv~~~qR~~aL~Laa~ll~ 285 (638)
.-|...|.+- ...-|..|..+.++|+.
T Consensus 609 ~~L~~LL~s~-n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 609 STIENLMLDE-NVPLQRSTLELISNMMS 635 (778)
T ss_dssp HHHHHGGGCS-SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHhC
Confidence 5566666663 55678889999999886
No 43
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=64.45 E-value=1.8e+02 Score=32.36 Aligned_cols=236 Identities=11% Similarity=0.109 Sum_probs=119.6
Q ss_pred HhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhcC-
Q 006622 23 KLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAAFCR- 101 (638)
Q Consensus 23 ~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLaaF~~- 101 (638)
..|.+.+-..|-+++..+..+..+-..+.+....+ .++..|++.- +. + ++. -+.-++-.+..++.
T Consensus 376 ~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~----~il~~l~~~l--~d----~---~~~-vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 376 QNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH----QALPSILNLM--ND----Q---SLQ-VKETTAWCIGRIADS 441 (861)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH----HHHHHHHHGG--GC----S---CHH-HHHHHHHHHHHHHHH
T ss_pred HHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH----HHHHHHHHHc--CC----C---cHH-HHHHHHHHHHHHHHH
Confidence 34445566678888888888886544333333333 3344444432 11 1 121 22233334444443
Q ss_pred -CcccccCcccccchhHHHHhhhcccccchHHHHHHHHHHHHhccc----chhhHHhhcCchHHHHHHHhcccCC-cchH
Q 006622 102 -VPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATG----DGVTTLYESGGMKVLAFQMSTFADG-SRLM 175 (638)
Q Consensus 102 -~pe~A~~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~----~G~~~l~~~g~v~~l~~~i~~~~~~-s~~~ 175 (638)
-+++...+-+-.-+|.+++.+... ..+...|+.+|..++...+ ..-...+ ...++.+...+.. .+. ..-.
T Consensus 442 ~~~~~~~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~l~~~~-~~il~~L~~~l~~-~d~~~~vr 517 (861)
T 2bpt_A 442 VAESIDPQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPSPIYNFY-PALVDGLIGAANR-IDNEFNAR 517 (861)
T ss_dssp HGGGSCTTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH-HHHHHHHHHHHTC-SCCGGGHH
T ss_pred hhhhcCCHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccchhhHHHH-HHHHHHHHHHHhC-cCcchHHH
Confidence 122222333445567788777542 3334556666666642111 1111111 2234444332221 122 2335
Q ss_pred HHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhhh---------------hhhhhHHHHHHHHHhhhhhhhhhH
Q 006622 176 ELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVL---------------HNALKFESLHLLTAVLSSNYSALL 240 (638)
Q Consensus 176 e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~---------------~~~~Kfe~l~~L~~lL~~~~~~~~ 240 (638)
..|++.|..+....+.+ . ...+..+++.+-..+... ....+-.++..|..+.... +.
T Consensus 518 ~~a~~al~~l~~~~~~~-~----~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~-- 589 (861)
T 2bpt_A 518 ASAFSALTTMVEYATDT-V----AETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKS-PS-- 589 (861)
T ss_dssp HHHHHHHHHHHHHCCGG-G----HHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHC-GG--
T ss_pred HHHHHHHHHHHHHcchh-h----HHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHh-hh--
Confidence 56888888888776422 1 122334444443333211 2233445677777777665 11
Q ss_pred HHHhhcCCCcchhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhcCCCc
Q 006622 241 HEALRVMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEEW 291 (638)
Q Consensus 241 ~~~l~~~~~~~W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~G~~W 291 (638)
.-..+...+...+..++++.-+..-|..++...+.+...+|.+.
T Consensus 590 -------~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~ 633 (861)
T 2bpt_A 590 -------SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGF 633 (861)
T ss_dssp -------GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGG
T ss_pred -------hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhH
Confidence 11245667788888888876532567888888888888887543
No 44
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=59.15 E-value=2.2e+02 Score=31.63 Aligned_cols=184 Identities=11% Similarity=0.086 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHhcC-CcccccCcccccchhHHHHhhhcc--------c------ccchHHHHHHHHHHHHhcccchhhHH
Q 006622 88 YLQLSVTVLAAFCR-VPEIASSEDMVSKVPPILELMLKE--------S------GTSILEECYEFLYLVTNATGDGVTTL 152 (638)
Q Consensus 88 ~~~LavsvLaaF~~-~pe~A~~~~~v~rIP~l~~~l~~~--------~------~~~~~~d~~~~L~~ia~s~~~G~~~l 152 (638)
.+.-++..+..+.. .++- ..+-+-.-+|.+++.+.+. + ...+...++++|..++...++.-...
T Consensus 516 vr~~a~~al~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 594 (861)
T 2bpt_A 516 ARASAFSALTTMVEYATDT-VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPV 594 (861)
T ss_dssp HHHHHHHHHHHHHHHCCGG-GHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGG
T ss_pred HHHHHHHHHHHHHHHcchh-hHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 34445555555553 3321 1222334456677776532 1 12233567888877753333322222
Q ss_pred hhcCchHHHHHHHhcccCCc-chHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHh
Q 006622 153 YESGGMKVLAFQMSTFADGS-RLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAV 231 (638)
Q Consensus 153 ~~~g~v~~l~~~i~~~~~~s-~~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~l 231 (638)
+. ..++.+...+.. ..+ .-.+.++..+..+....+.+ . ...+..+++.+-.-+.......+..++..+..+
T Consensus 595 ~~-~l~~~l~~~l~~--~~~~~v~~~~~~~l~~l~~~~~~~-~----~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l 666 (861)
T 2bpt_A 595 AD-MLMGLFFRLLEK--KDSAFIEDDVFYAISALAASLGKG-F----EKYLETFSPYLLKALNQVDSPVSITAVGFIADI 666 (861)
T ss_dssp HH-HHHHHHHHHHHS--TTGGGTHHHHHHHHHHHHHHHGGG-G----HHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHcc--CCCCcHHHHHHHHHHHHHHHHhhh-H----HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 21 234443222221 223 45678888888777766422 1 223556677776666544455667777777777
Q ss_pred hhhhhhhhHHHHhhcCCCcchhHHHHHHHHHHHhcC-CChhhhhhHHHHHHHHHhhcCCC
Q 006622 232 LSSNYSALLHEALRVMPDSKWSMYMRVGVVAILQNR-VAPAEKLQALILAESIVSIKGEE 290 (638)
Q Consensus 232 L~~~~~~~~~~~l~~~~~~~W~~~ir~GL~~IL~sk-v~~~qR~~aL~Laa~ll~l~G~~ 290 (638)
.... +.. -..+...+...+...|++. ..+..|..++.....++..+|..
T Consensus 667 ~~~~-~~~---------~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~ 716 (861)
T 2bpt_A 667 SNSL-EED---------FRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGAD 716 (861)
T ss_dssp HHHT-GGG---------GHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGG
T ss_pred HHHh-chh---------ccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhh
Confidence 6554 111 1123445556666667765 45789999999999999998754
No 45
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=57.99 E-value=1.2e+02 Score=28.55 Aligned_cols=160 Identities=16% Similarity=0.169 Sum_probs=96.6
Q ss_pred cccCcccccchhH-HHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCCcchHHHHHHHHH
Q 006622 105 IASSEDMVSKVPP-ILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQ 183 (638)
Q Consensus 105 ~A~~~~~v~rIP~-l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~s~~~e~Al~LL~ 183 (638)
+..-.++..++|. |.+.+. +.+-..-..++..|..+....++-...-. ...+..+...+.. -.+..-...|++.|.
T Consensus 6 ~~~~~di~~~l~~~l~~~l~-s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~k-d~~~~V~~~a~~~l~ 82 (242)
T 2qk2_A 6 LLDPVDILSKMPKDFYDKLE-EKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITK-DSNVVLVAMAGKCLA 82 (242)
T ss_dssp TTSCBCCGGGSCTTHHHHHT-CSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHH-CSCHHHHHHHHHHHH
T ss_pred hCCcccccccCCHHHHhhhc-cCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhcc-CCCHHHHHHHHHHHH
Confidence 3344567777774 777664 33322235667777666422122111001 1223333222310 123334678899999
Q ss_pred HHHhccccccccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhhhHHHHhhcCCCcchhHHHHHHHHHH
Q 006622 184 LMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWSMYMRVGVVAI 263 (638)
Q Consensus 184 ~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~~~~~~~~~~l~~~~~~~W~~~ir~GL~~I 263 (638)
.+....+.. -......+++.|-..|.......+-.++..|..+.... + ...+...|...
T Consensus 83 ~la~~l~~~-----~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~---~-------------~~~ll~~l~~~ 141 (242)
T 2qk2_A 83 LLAKGLAKR-----FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST---S-------------LEAQQESIVES 141 (242)
T ss_dssp HHHHHHGGG-----GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS---C-------------HHHHHHHHHHH
T ss_pred HHHHHHhhh-----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC---C-------------HHHHHHHHHHH
Confidence 888776421 12346678888888887766677777778888777653 1 23455778888
Q ss_pred HhcCCChhhhhhHHHHHHHHHhhcCC
Q 006622 264 LQNRVAPAEKLQALILAESIVSIKGE 289 (638)
Q Consensus 264 L~skv~~~qR~~aL~Laa~ll~l~G~ 289 (638)
|++| .+.-|..++.....++..+|+
T Consensus 142 l~~~-~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 142 LSNK-NPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp TTCS-CHHHHHHHHHHHHHHHTTCCG
T ss_pred HcCC-ChHHHHHHHHHHHHHHHHcCC
Confidence 8888 678899999999998888763
No 46
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=52.84 E-value=3.5e+02 Score=32.04 Aligned_cols=233 Identities=13% Similarity=0.096 Sum_probs=133.0
Q ss_pred CccHHHHHHhcccCCchhhHHHHHHHHhcCCCC----CHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHH
Q 006622 15 SPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGD----DAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQ 90 (638)
Q Consensus 15 ~~~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~----d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~ 90 (638)
...+...+.-+.+.|..-|+.++-=+.+.++.. |.+... +++..|+..-. . +....+.
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~--------~il~~Ll~~L~--d--------~~~~vR~ 66 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSER--------KVVKMILKLLE--D--------KNGEVQN 66 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHH--------HHHHHHHHHTT--C--------SSHHHHH
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHH--------HHHHHHHHHhc--C--------CCHHHHH
Confidence 346778888888888888888876666666542 111111 23333443320 1 1234566
Q ss_pred HHHHHHHHhcC-CcccccCcccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccch-----hhHHhhcCchHHHHHH
Q 006622 91 LSVTVLAAFCR-VPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDG-----VTTLYESGGMKVLAFQ 164 (638)
Q Consensus 91 LavsvLaaF~~-~pe~A~~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G-----~~~l~~~g~v~~l~~~ 164 (638)
.|+..|..++. .++ +.+-.-+|.+++.+...++ .+-.-+.++|..++...+.. ...-.-...++.+...
T Consensus 67 ~A~~~L~~l~~~~~~----~~~~~i~~~Ll~~l~d~~~-~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~ 141 (1230)
T 1u6g_C 67 LAVKCLGPLVSKVKE----YQVETIVDTLCTNMLSDKE-QLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSA 141 (1230)
T ss_dssp HHHHHHHHHHTTSCH----HHHHHHHHHHHHHTTCSSS-HHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCH----HHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHH
Confidence 67777777664 333 3344445667776654333 33355677777774322221 0111223356665444
Q ss_pred HhcccCCcchHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhhhHHHHh
Q 006622 165 MSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEAL 244 (638)
Q Consensus 165 i~~~~~~s~~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~~~~~~~~~~l 244 (638)
+.. .+...-.+.|+..|..++...+. .+. . .+..+++.+-..+...+...|-.++..|..+.... +..
T Consensus 142 l~~-~~~~~~~~~al~~l~~~~~~~~~-~l~-~---~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~-~~~----- 209 (1230)
T 1u6g_C 142 IAK-QEDVSVQLEALDIMADMLSRQGG-LLV-N---FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC-GNI----- 209 (1230)
T ss_dssp HSC-CSCHHHHHHHHHHHHHHHHHTCS-SCT-T---THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC---------
T ss_pred HcC-CCchHHHHHHHHHHHHHHHHhHh-HHH-H---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhc-CHH-----
Confidence 431 13334568899999999887642 221 2 24556666666666666677888888888887665 111
Q ss_pred hcCCCcchhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhcCC
Q 006622 245 RVMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGE 289 (638)
Q Consensus 245 ~~~~~~~W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~G~ 289 (638)
. ...+...+...|.+.-.+..|..+++....+....|.
T Consensus 210 ------~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~ 247 (1230)
T 1u6g_C 210 ------V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH 247 (1230)
T ss_dssp --------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG
T ss_pred ------H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH
Confidence 0 1223445555565554467788899999999988875
No 47
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=39.10 E-value=4.4e+02 Score=29.23 Aligned_cols=183 Identities=13% Similarity=0.099 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHhcC-Cc--ccccCcccccchhHHHHhhhcccc-cchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHH
Q 006622 88 YLQLSVTVLAAFCR-VP--EIASSEDMVSKVPPILELMLKESG-TSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAF 163 (638)
Q Consensus 88 ~~~LavsvLaaF~~-~p--e~A~~~~~v~rIP~l~~~l~~~~~-~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~ 163 (638)
.+..++..+..++. .+ ++. |-+-.-+|.+++.+....+ ..+-..++.++..++...+......+.. .++.+..
T Consensus 580 ~~~~~~~~l~~l~~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~~~l~~ 656 (876)
T 1qgr_A 580 LQSLLCATLQNVLRKVQHQDAL--QISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEA-FKPFLGI 656 (876)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHH--TTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhhh--HHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHH
Confidence 34566777777775 33 222 3333345667777765432 2445778888877753333332222222 4444433
Q ss_pred HHhcccCCcchHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhh--hhhhhhHHHHHHHHHhhhhhhhhhHH
Q 006622 164 QMSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAV--LHNALKFESLHLLTAVLSSNYSALLH 241 (638)
Q Consensus 164 ~i~~~~~~s~~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~--~~~~~Kfe~l~~L~~lL~~~~~~~~~ 241 (638)
.+.. .+...-...|+..+..+....+ ..+ ...+..+++.+...+.. .+...|-.++..+..+.... +..
T Consensus 657 ~l~~-~~~~~vr~~a~~~l~~l~~~~~-~~~----~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~-g~~-- 727 (876)
T 1qgr_A 657 GLKN-YAEYQVCLAAVGLVGDLCRALQ-SNI----IPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAI-GGE-- 727 (876)
T ss_dssp HHHH-CTTHHHHHHHHHHHHHHHHHHG-GGG----HHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHH-GGG--
T ss_pred HHcC-cchHHHHHHHHHHHHHHHHHHH-Hhh----hhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHh-chh--
Confidence 3321 1122234568888888887764 222 22356677777777765 35567778888888876654 111
Q ss_pred HHhhcCCCcchhHHHHHHHHHHHhcCCCh----------hhhhhHHHHHHHHHhhcCC
Q 006622 242 EALRVMPDSKWSMYMRVGVVAILQNRVAP----------AEKLQALILAESIVSIKGE 289 (638)
Q Consensus 242 ~~l~~~~~~~W~~~ir~GL~~IL~skv~~----------~qR~~aL~Laa~ll~l~G~ 289 (638)
-..|...+...|...++.+.++ .-|..++.....++..+|.
T Consensus 728 -------~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~ 778 (876)
T 1qgr_A 728 -------FKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKG 778 (876)
T ss_dssp -------GGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -------HHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 1235566666666666655421 5566677777777777764
No 48
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=38.61 E-value=1.4e+02 Score=32.78 Aligned_cols=77 Identities=18% Similarity=0.165 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhh--hhhhHHHHhhcCCCcchhHHHHHHHHHHHhcCCChhhhhhHH
Q 006622 200 SELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSN--YSALLHEALRVMPDSKWSMYMRVGVVAILQNRVAPAEKLQAL 277 (638)
Q Consensus 200 ~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~~--~~~~~~~~l~~~~~~~W~~~ir~GL~~IL~skv~~~qR~~aL 277 (638)
.....+++.+...+.....+..+|++..+..+.... .+... ..-...+...|..++ + -.+.-|-.||
T Consensus 235 ~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~---------~~~~~~~~~~L~~L~-~-~d~~vr~~aL 303 (591)
T 2vgl_B 235 REAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYY---------NMLLKKLAPPLVTLL-S-GEPEVQYVAL 303 (591)
T ss_dssp HHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSH---------HHHHHHTHHHHHHHT-T-SCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHH---------HHHHHHHHHHHHHHh-c-CCccHHHHHH
Confidence 344455666655555556677888888887775421 00000 001122223333333 3 3567788888
Q ss_pred HHHHHHHhhc
Q 006622 278 ILAESIVSIK 287 (638)
Q Consensus 278 ~Laa~ll~l~ 287 (638)
.-...+....
T Consensus 304 ~~l~~i~~~~ 313 (591)
T 2vgl_B 304 RNINLIVQKR 313 (591)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 8777777764
No 49
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=37.15 E-value=2.7e+02 Score=33.10 Aligned_cols=232 Identities=10% Similarity=0.074 Sum_probs=112.8
Q ss_pred HHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHH
Q 006622 18 LDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLA 97 (638)
Q Consensus 18 l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLa 97 (638)
+...++.|..++.+-|-++...+..+.+.-....+. .++..|+..-. . .++.. +.-|...|+
T Consensus 50 l~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~--------~i~~~Ll~~l~--d-------~~~~v-R~~a~~~L~ 111 (1230)
T 1u6g_C 50 VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVE--------TIVDTLCTNML--S-------DKEQL-RDISSIGLK 111 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHH--------HHHHHHHHHTT--C-------SSSHH-HHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHH--------HHHHHHHHHhc--C-------CcHHH-HHHHHHHHH
Confidence 444555566556666666666666555532222221 23333443320 1 11222 455566666
Q ss_pred HhcC-Ccccc-----cCcccccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcc-cC
Q 006622 98 AFCR-VPEIA-----SSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTF-AD 170 (638)
Q Consensus 98 aF~~-~pe~A-----~~~~~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~-~~ 170 (638)
.++. .+.-+ ..+..-.-+|.|.+.+..+.+..+...++++|..++...++.... .++.+...+... .+
T Consensus 112 ~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~-----~~~~ll~~l~~~L~~ 186 (1230)
T 1u6g_C 112 TVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN-----FHPSILTCLLPQLTS 186 (1230)
T ss_dssp HHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT-----THHHHHHHHGGGGGC
T ss_pred HHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH-----HHHHHHHHHHHHHcC
Confidence 6664 22211 001122345778888764344556688899988875212221111 122222222221 11
Q ss_pred -CcchHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhhhHHHHhhcCCC
Q 006622 171 -GSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPD 249 (638)
Q Consensus 171 -~s~~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~~~~~~~~~~l~~~~~ 249 (638)
...-...|+.-|..+....+... ...-+..++..+... .....+-.++..+..+.... +..+
T Consensus 187 ~~~~vR~~a~~al~~l~~~~~~~~----~~~~l~~l~~~L~~~---~~~~~r~~a~~~l~~l~~~~-~~~~--------- 249 (1230)
T 1u6g_C 187 PRLAVRKRTIIALGHLVMSCGNIV----FVDLIEHLLSELSKN---DSMSTTRTYIQCIAAISRQA-GHRI--------- 249 (1230)
T ss_dssp SSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHT---CSSCSCTTHHHHHHHHHHHS-SGGG---------
T ss_pred CcHHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHhccC---CchhHHHHHHHHHHHHHHHh-HHHH---------
Confidence 22335667777777666543211 112234444444331 11245566777777776554 1110
Q ss_pred cchhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhcCCC
Q 006622 250 SKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEE 290 (638)
Q Consensus 250 ~~W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~G~~ 290 (638)
..+...+...+...++.. .+.-|..|+.....+...+|.+
T Consensus 250 ~~~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~ 289 (1230)
T 1u6g_C 250 GEYLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKE 289 (1230)
T ss_dssp TTSCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHH
Confidence 123344556666666643 4667788888888888877754
No 50
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=36.37 E-value=5.1e+02 Score=29.18 Aligned_cols=176 Identities=11% Similarity=0.080 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhcC-CcccccCccccc-chhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHh
Q 006622 89 LQLSVTVLAAFCR-VPEIASSEDMVS-KVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMS 166 (638)
Q Consensus 89 ~~LavsvLaaF~~-~pe~A~~~~~v~-rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~ 166 (638)
+.-|...|..++. .| ++++. -+|.+.+.+.. ++...-..++.+|..++.+.++..+. .-.+.++.+...+.
T Consensus 338 r~~a~~~L~~la~~~~-----~~~~~~l~~~l~~~l~~-~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~ 410 (852)
T 4fdd_A 338 RKCSAAALDVLANVYR-----DELLPHILPLLKELLFH-HEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLS 410 (852)
T ss_dssp HHHHHHHHHHHHHHHG-----GGGHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcC
Confidence 4556666666664 22 22332 23555555543 34444466777777775322211111 11223444322222
Q ss_pred cccCCc-chHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhhhHHHHhh
Q 006622 167 TFADGS-RLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALR 245 (638)
Q Consensus 167 ~~~~~s-~~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~~~~~~~~~~l~ 245 (638)
+.. .-...|...|..+-...+.. .....+..+++.+-..+...+...|-.+|..|..+..... .
T Consensus 411 ---d~~~~Vr~~a~~~l~~l~~~~~~~----~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~-~------- 475 (852)
T 4fdd_A 411 ---DKKALVRSITCWTLSRYAHWVVSQ----PPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC-T------- 475 (852)
T ss_dssp ---CSSHHHHHHHHHHHHHTHHHHHHS----CTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG-G-------
T ss_pred ---CCCHHHHHHHHHHHHHHHHHhccc----hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh-H-------
Confidence 222 22344555555444433211 1233466777777776666566778888888888876651 1
Q ss_pred cCCCcchhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhcCC
Q 006622 246 VMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGE 289 (638)
Q Consensus 246 ~~~~~~W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~G~ 289 (638)
.-..+...+...|..+++.. ..+.+.-++.....+.+..|.
T Consensus 476 --~l~~~l~~ll~~L~~~l~~~-~~~~~~~~~~ai~~l~~~~~~ 516 (852)
T 4fdd_A 476 --ELVPYLAYILDTLVFAFSKY-QHKNLLILYDAIGTLADSVGH 516 (852)
T ss_dssp --GGGGGHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHGG
T ss_pred --hhHhHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhhh
Confidence 11235677778888888643 334444456666667776664
No 51
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=35.63 E-value=3.7e+02 Score=28.23 Aligned_cols=185 Identities=12% Similarity=0.077 Sum_probs=101.4
Q ss_pred HHHHHHHH-hcCCcccccCcccccc--hhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhh-cCchHHHHHHHh
Q 006622 91 LSVTVLAA-FCRVPEIASSEDMVSK--VPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYE-SGGMKVLAFQMS 166 (638)
Q Consensus 91 LavsvLaa-F~~~pe~A~~~~~v~r--IP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~-~g~v~~l~~~i~ 166 (638)
-++-=|.. |..|+++| ++|+.+ +-.|+.++..+++.+ -.-++.+|..+- -+..|-..+++ ...|..+.+-+-
T Consensus 137 ~aLfsLk~~~q~D~~Fa--~EFI~~~GL~~Li~vi~~~~gN~-q~Y~L~AL~~LM-~~v~Gm~gvvs~~~fI~~lyslv~ 212 (339)
T 3dad_A 137 RSLFSLKQIFQEDKDLV--PEFVHSEGLSCLIRVGAAADHNY-QSYILRALGQLM-LFVDGMLGVVAHSDTIQWLYTLCA 212 (339)
T ss_dssp HHHHHHHHHHHTCTTHH--HHHHHTTHHHHHHHHHTTSCHHH-HHHHHHHHHHHT-TSHHHHHHHHHCHHHHHHHHHGGG
T ss_pred HHHHHHHHHhhcchHHH--HHHHHhccHHHHHHHHHhcChHH-HHHHHHHHHHHH-hccccccchhCCHHHHHHHHHHHc
Confidence 33444555 78899999 666655 567888887776666 488999998884 68899988885 335666533222
Q ss_pred cccCCcchHHHHHHHHHHHHhccc--ccccc--------ccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhh
Q 006622 167 TFADGSRLMELAIRLLQLMLSKLS--LEIIT--------NDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNY 236 (638)
Q Consensus 167 ~~~~~s~~~e~Al~LL~~LL~~~~--~~~~~--------~~~~~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~~~ 236 (638)
.....-...|++||..++.... ...+. .....++..++..|.+ ......+.+.-++.+++.+|....
T Consensus 213 --s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~-~~~~D~elq~~amtLIN~lL~~ap 289 (339)
T 3dad_A 213 --SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEE-KNGADPELLVYTVTLINKTLAALP 289 (339)
T ss_dssp --CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTT-TTSCCHHHHHHHHHHHHHHHHHCS
T ss_pred --CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhc-cCCCCHHHHHHHHHHHHHHHhcCC
Confidence 1222235779999988877641 00000 0001123333333321 012344667778888999888762
Q ss_pred hhhHHHHhhcCCCcchhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHh
Q 006622 237 SALLHEALRVMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVS 285 (638)
Q Consensus 237 ~~~~~~~l~~~~~~~W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~ 285 (638)
... ..+.....-+...++.-+..-|.++-+..+-..=|.+.+..++
T Consensus 290 d~d---~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Ql~iyE~~~~ 335 (339)
T 3dad_A 290 DQD---SFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQLVLYENALK 335 (339)
T ss_dssp SHH---HHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHHHHHHHHHHH
T ss_pred Chh---HHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHHHHHHHHHhh
Confidence 111 0111112223445555555555555444333333555554443
No 52
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=30.74 E-value=1.4e+02 Score=30.16 Aligned_cols=99 Identities=10% Similarity=0.129 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhhhHHHHhhcCCCcchh
Q 006622 174 LMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWS 253 (638)
Q Consensus 174 ~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~~~~~~~~~~l~~~~~~~W~ 253 (638)
-...++++|..++.+.+... ..-..++...++|.|-.-.....+..+=.+-.++..+. ..+ +-+.+.
T Consensus 103 v~~~~L~~L~~l~~~l~~~~-y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~-~v~-----------~~~~v~ 169 (266)
T 2of3_A 103 ALIKVLELCKVIVELIRDTE-TPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLS-DVV-----------GPLKMT 169 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH-HHH-----------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH-HHC-----------CHHHHH
Confidence 34566677777766664221 11223445566676666554444444433333333322 221 111122
Q ss_pred HHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhcCCC
Q 006622 254 MYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEE 290 (638)
Q Consensus 254 ~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~G~~ 290 (638)
.. +..-++|| +.++|..+|....++++.+|..
T Consensus 170 ~~----l~~g~ksK-N~R~R~e~l~~l~~li~~~G~~ 201 (266)
T 2of3_A 170 PM----LLDALKSK-NARQRSECLLVIEYYITNAGIS 201 (266)
T ss_dssp HH----HHHGGGCS-CHHHHHHHHHHHHHHHHHHCSG
T ss_pred HH----HHHHHccC-CHHHHHHHHHHHHHHHHhcCCC
Confidence 23 33344888 4899999999999999999955
No 53
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=28.69 E-value=2.8e+02 Score=31.11 Aligned_cols=130 Identities=12% Similarity=0.061 Sum_probs=74.4
Q ss_pred HHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCc-hhHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHH
Q 006622 20 DCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGP-RFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAA 98 (638)
Q Consensus 20 ~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~-~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLaa 98 (638)
-.++.|++.+-..|..++.-++.++. |....+.+-..=+. ..+.+||... ...-+.=|...|..
T Consensus 38 Pll~~L~S~~~~~r~~A~~al~~l~~--~~~~~~l~~~~~~v~~ll~~lL~D~-------------~~~Vr~~A~gaLrn 102 (684)
T 4gmo_A 38 PVLKDLKSPDAKSRTTAAGAIANIVQ--DAKCRKLLLREQVVHIVLTETLTDN-------------NIDSRAAGWEILKV 102 (684)
T ss_dssp HHHHHHSSSCCSHHHHHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHTTTTCS-------------CHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHc--CcHHHHHHHHcCCHHHHHHHHcCCC-------------CHHHHHHHHHHHHH
Confidence 45567899999999999999999995 66655544433222 3445555432 11223334455555
Q ss_pred hcCC--cccccCccccc--chhHHHHhhhcccc--------------------cchHHHHHHHHHHHHhcccchhhHHhh
Q 006622 99 FCRV--PEIASSEDMVS--KVPPILELMLKESG--------------------TSILEECYEFLYLVTNATGDGVTTLYE 154 (638)
Q Consensus 99 F~~~--pe~A~~~~~v~--rIP~l~~~l~~~~~--------------------~~~~~d~~~~L~~ia~s~~~G~~~l~~ 154 (638)
+|.+ +++. ..|+. -+|.|...+.+... ..+...++.+|.++|.++.+-.+.+..
T Consensus 103 L~~~~g~d~~--~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~ 180 (684)
T 4gmo_A 103 LAQEEEADFC--VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVAT 180 (684)
T ss_dssp HHHHSCHHHH--HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHT
T ss_pred HHhhcCchHH--HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 5532 3332 11111 24555555532110 122345667777776556666777888
Q ss_pred cCchHHHHHHHh
Q 006622 155 SGGMKVLAFQMS 166 (638)
Q Consensus 155 ~g~v~~l~~~i~ 166 (638)
.|.++.+...+.
T Consensus 181 ~~~l~~l~~~L~ 192 (684)
T 4gmo_A 181 KQTILRLLFRLI 192 (684)
T ss_dssp CHHHHHHHHHHH
T ss_pred cccHHHHHHHHH
Confidence 888888766554
No 54
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=28.30 E-value=4.1e+02 Score=26.95 Aligned_cols=147 Identities=14% Similarity=0.121 Sum_probs=91.5
Q ss_pred cccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhcccCCcchHHHHHHHHHHHHhccc
Q 006622 111 MVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKLS 190 (638)
Q Consensus 111 ~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~~~s~~~e~Al~LL~~LL~~~~ 190 (638)
+-.-.|.++++.. +.++-+.-.|+.||-.+-...|-+.+.+.. .+.++.+-+. .+..-..++|...|..+ +.
T Consensus 73 ~e~~Ld~iI~llk-~~dEkval~A~r~L~~LLe~vpL~~~~y~K--l~~aL~dlik--~~~~il~~eaae~Lgkl--kv- 144 (265)
T 3b2a_A 73 LERHLDVFINALS-QENEKVTIKALRALGYLVKDVPMGSKTFLK--AAKTLVSLLE--SPDDMMRIETIDVLSKL--QP- 144 (265)
T ss_dssp HHHHHHHHHHTCC-STTHHHHHHHHHHHHHHHTTCCBCHHHHHH--HHHHHHHHTT--SCCHHHHHHHHHHHHHC--CB-
T ss_pred HHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHHHhc--CCCchHHHHHHHHhCcC--Cc-
Confidence 3344577777774 455555688999995553356666666553 2444434343 34455677788877766 22
Q ss_pred cccccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhhhhhhHHHHhhcCCCcchhHHHHHHHHHHHhcCCCh
Q 006622 191 LEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWSMYMRVGVVAILQNRVAP 270 (638)
Q Consensus 191 ~~~~~~~~~~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~~~~~~~~~~l~~~~~~~W~~~ir~GL~~IL~skv~~ 270 (638)
. . .-..+++.+.+-..-..-..|--.+.+|..+-... ....-..+|.+|+.++|++. .+
T Consensus 145 ----~-~---~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S------------~D~~i~~~I~~eI~elL~~e-D~ 203 (265)
T 3b2a_A 145 ----L-E---DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS------------ADSGHLTLILDEIPSLLQND-NE 203 (265)
T ss_dssp ----S-C---CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC------------SSCCCGGGTTTTHHHHHTCS-CH
T ss_pred ----c-c---chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc------------CCHHHHHHHHHHHHHHHcCC-CH
Confidence 1 1 12234555555554444455655566666665543 22223477889999999999 99
Q ss_pred hhhhhHHHHHHHHHhh
Q 006622 271 AEKLQALILAESIVSI 286 (638)
Q Consensus 271 ~qR~~aL~Laa~ll~l 286 (638)
.-++-||...+.|+..
T Consensus 204 ~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 204 FIVELALDVLEKALSF 219 (265)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999988877765
No 55
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=27.50 E-value=5e+02 Score=26.34 Aligned_cols=163 Identities=13% Similarity=0.125 Sum_probs=98.6
Q ss_pred cHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCC--------------CCCC
Q 006622 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINS--------------GNSS 82 (638)
Q Consensus 17 ~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~--------------~~~~ 82 (638)
.+.--+.+|+.+|++=|.-+|+.+.++++.-|-...+++.+ ++||++++.. +...+ ....
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e----~~Ld~iI~ll--k~~dEkval~A~r~L~~LLe~vp 107 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE----RHLDVFINAL--SQENEKVTIKALRALGYLVKDVP 107 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH----HHHHHHHHTC--CSTTHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH----HHHHHHHHHH--hccchhHHHHHHHHHHHHHcCCC
Confidence 45667788888899999999999999999766665555555 4566666543 12000 0011
Q ss_pred cchHHHHHHHHHHHHHhcCCccc--------ccCcccccchhHHHHhh---hcccccchHHHHHHHHHHHHhcccchhhH
Q 006622 83 ENRDAYLQLSVTVLAAFCRVPEI--------ASSEDMVSKVPPILELM---LKESGTSILEECYEFLYLVTNATGDGVTT 151 (638)
Q Consensus 83 ~~~~~~~~LavsvLaaF~~~pe~--------A~~~~~v~rIP~l~~~l---~~~~~~~~~~d~~~~L~~ia~s~~~G~~~ 151 (638)
-+++.|..++=++.....+--++ ...=+.+..+|-+.+.+ .++.+..+=.-++..|+.++ +..|-..
T Consensus 108 L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia--~~S~D~~ 185 (265)
T 3b2a_A 108 MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNML--NSSADSG 185 (265)
T ss_dssp BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHG--GGCSSCC
T ss_pred CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhh--cccCCHH
Confidence 35778888887777666641111 11114455555555553 25666555577888999996 3223222
Q ss_pred HhhcCchHHHHHHHhcccCCcchHHHHHHHHHHHHhccc
Q 006622 152 LYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKLS 190 (638)
Q Consensus 152 l~~~g~v~~l~~~i~~~~~~s~~~e~Al~LL~~LL~~~~ 190 (638)
+++. .+.-+ ..+.. .+..+-.+.|+.+|..++++.-
T Consensus 186 i~~~-I~~eI-~elL~-~eD~~l~e~aLd~Le~ils~pi 221 (265)
T 3b2a_A 186 HLTL-ILDEI-PSLLQ-NDNEFIVELALDVLEKALSFPL 221 (265)
T ss_dssp CGGG-TTTTH-HHHHT-CSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHH-HHHHH-HHHHc-CCCHHHHHHHHHHHHHHHcCcc
Confidence 2221 22222 22222 4678889999999999999864
No 56
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=21.74 E-value=6.9e+02 Score=25.93 Aligned_cols=189 Identities=12% Similarity=0.093 Sum_probs=92.7
Q ss_pred CCCCCccHHHHHHhcccCCchhhHHHHHHHHhcCCCCCHHHHHHHHHhcCchhHHHHHhcCCCCCCCCCCCCcchHHHHH
Q 006622 11 ESAPSPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQ 90 (638)
Q Consensus 11 ~~~~~~~l~~cl~lLk~~~D~~kFvgLlLvtkl~~~~d~~~~~~v~~AiG~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~ 90 (638)
+.+.-..+...+.-|++.+...|..+.-.++++...-..+ +.++ ..+..|.... . .+. .-+.
T Consensus 5 ~~~~~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~---~~~~----~l~~~L~~~~---d-------~~~-~vr~ 66 (588)
T 1b3u_A 5 GDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVE---RTRS----ELLPFLTDTI---Y-------DED-EVLL 66 (588)
T ss_dssp TTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHH---HHHH----THHHHHHHTC---C-------CCH-HHHH
T ss_pred cCCCcCcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHH---HHHH----HHHHHHHHhc---C-------CcH-HHHH
Confidence 3445566888888899888888888876666554321111 1111 1233332221 1 122 3344
Q ss_pred HHHHHHHHhcCCcccccCcc-cccchhHHHHhhhcccccchHHHHHHHHHHHHhcccchhhHHhhcCchHHHHHHHhccc
Q 006622 91 LSVTVLAAFCRVPEIASSED-MVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFA 169 (638)
Q Consensus 91 LavsvLaaF~~~pe~A~~~~-~v~rIP~l~~~l~~~~~~~~~~d~~~~L~~ia~s~~~G~~~l~~~g~v~~l~~~i~~~~ 169 (638)
.+...|..|+.. + ..++ .-.-+|.|...+ ...+..+-..+.++|..++...+ .+.+ ..-.++.+ ..+.. .
T Consensus 67 ~~~~~L~~~~~~--~-~~~~~~~~ll~~L~~l~-~~~~~~vR~~a~~~L~~l~~~~~--~~~~-~~~l~~~l-~~l~~-~ 137 (588)
T 1b3u_A 67 ALAEQLGTFTTL--V-GGPEYVHCLLPPLESLA-TVEETVVRDKAVESLRAISHEHS--PSDL-EAHFVPLV-KRLAG-G 137 (588)
T ss_dssp HHHHHHTTCSGG--G-TSGGGGGGGHHHHHHHT-TSSCHHHHHHHHHHHHHHHTTSC--HHHH-HHTHHHHH-HHHHT-C
T ss_pred HHHHHHHHHHhc--c-CcHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHCC--HHHH-HHHHHHHH-HHHhc-C
Confidence 455555555531 1 1223 333446655544 33455556778888888853222 2222 22233333 33321 2
Q ss_pred CCcchHHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhh
Q 006622 170 DGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSS 234 (638)
Q Consensus 170 ~~s~~~e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~~~~~Kfe~l~~L~~lL~~ 234 (638)
+.......|..++..+....+. . ....+++.+..-........+..++..|..+...
T Consensus 138 ~~~~~R~~a~~~l~~~~~~~~~-----~---~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~ 194 (588)
T 1b3u_A 138 DWFTSRTSACGLFSVCYPRVSS-----A---VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKV 194 (588)
T ss_dssp SSHHHHHHHGGGHHHHTTTSCH-----H---HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHhcCH-----H---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 2233456677777666555421 1 1223344443333344445566667777666544
No 57
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=21.45 E-value=8.5e+02 Score=26.88 Aligned_cols=102 Identities=15% Similarity=0.063 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhhhh--hhhhHHHHHHHHHhhhhhhhhhHHHHhhcCCCcchh
Q 006622 176 ELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLH--NALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWS 253 (638)
Q Consensus 176 e~Al~LL~~LL~~~~~~~~~~~~~~~l~~lv~~lA~~F~~~~--~~~Kfe~l~~L~~lL~~~~~~~~~~~l~~~~~~~W~ 253 (638)
..++..|..+....+.+.+ ...+..+++.+-.-+.... ...+-+++..+..+.... +.. -..+.
T Consensus 582 ~~~~~~l~~l~~~~~~~~~----~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~-~~~---------~~~~~ 647 (876)
T 1qgr_A 582 SLLCATLQNVLRKVQHQDA----LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVL-GGE---------FLKYM 647 (876)
T ss_dssp HHHHHHHHHHHTTSCHHHH----HTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHH-GGG---------GGGGH
T ss_pred HHHHHHHHHHHHHhChhhh----hHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHH-Hhh---------HHHHH
Confidence 3456666666666541111 1234556666666555543 245667788887777654 111 12344
Q ss_pred HHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhcCCCc
Q 006622 254 MYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEEW 291 (638)
Q Consensus 254 ~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~G~~W 291 (638)
..+...+...|++.-.+.-|..|+.+...++..+|..+
T Consensus 648 ~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~ 685 (876)
T 1qgr_A 648 EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNI 685 (876)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 55667777788877567788999999999999888544
Done!