BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006624
(638 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 24/168 (14%)
Query: 237 LISAFGKLGRDISAIRLFDE-----MKENGLQPT-AKIYTTLVSIYFKLGEVE------- 283
+ A+ LG + R+FD ++ L P A ++ L +Y++ G ++
Sbjct: 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR 261
Query: 284 KALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLI 343
+A+ L C L +K G ED Y + + C +NNL
Sbjct: 262 RAIELQPHFPDAYCNLA-----NALKEKGSVAEAEDCYNTALRL----CPTHADSLNNLA 312
Query: 344 NVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEA 391
N+ G +E+A++L+ K AL+ P ++ + S+ + + EA
Sbjct: 313 NIKREQGNIEEAVRLYRK--ALEVFPEFAAAHSNLASVLQQQGKLQEA 358
>pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase
Length = 1134
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 194 TANTYNSMILMLMQEGYY-EKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAI- 251
T + YN+++L ++G + E ++ L+ M + PD ++Y+A + G+ +D I
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLF--MVKDAGLTPDLLSYAAALQCMGRQDQDAGTIE 221
Query: 252 RLFDEMKENGLQPTAKIYTTLVS 274
R ++M + GL+ A L+S
Sbjct: 222 RCLEQMSQEGLKLQALFTAVLLS 244
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 12/96 (12%)
Query: 547 INSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSR----AGMFEEAA 602
++ +N ++ G A+ G K + + ++ + + PD +SY L C+ R AG E
Sbjct: 165 LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIE--- 221
Query: 603 RLMKDMNAKGFEYDQITYSSILEAVGKVDEDRNPTL 638
R ++ M+ +G + Q ++++L + +EDR L
Sbjct: 222 RCLEQMSQEGLKL-QALFTAVLLS----EEDRATVL 252
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 487 FGKCGRLSDAVDLFNEM----KKLRCKPDVYT---YNALMSGMVRAGMIDDAYSLLRRME 539
F KC L+D + L + + R K + T YNA+M G R G + +L ++
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 540 EDGCVPDINSHNIILNGLAKS 560
+ G PD+ S+ L + +
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQ 213
>pdb|1WN0|A Chain A, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|B Chain B, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|C Chain C, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|D Chain D, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
Length = 145
Score = 33.1 bits (74), Expect = 0.44, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 516 NALMSGMVRAGMIDDAYSLLRRMEEDGCVP 545
NAL+S M +G++D+ + L+ ++EDG P
Sbjct: 11 NALLSSMFASGLVDEQFQQLQMLQEDGGTP 40
>pdb|3SFX|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Tipifarnib
pdb|3SFY|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Ethylenediamine Inhibitor 2
Length = 349
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 396 EKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKA 455
+ + + LP P L D F + NRV+ A + E++ + Y + GY +
Sbjct: 290 DPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS--------SEYDQMRAGYWEF 341
Query: 456 KRYEAANE 463
+R E A E
Sbjct: 342 RRRECAEE 349
>pdb|3ULQ|A Chain A, Crystal Structure Of The Anti-Activator Rapf Complexed
With The Response Regulator Coma Dna Binding Domain
Length = 383
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 19/116 (16%)
Query: 221 MCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280
+ N G C Y I F + AI +F+E N L + Y + I++KLG
Sbjct: 227 LYNIGLCKNSQSQYEDAIPYFKR------AIAVFEE--SNILPSLPQAYFLITQIHYKLG 278
Query: 281 EVEKALGLVQEMKGKGCALT------VY-TYTELIKGLGRAGRVEDAYGLFMNMLK 329
+++KA E KG A + +Y + E +K L +G E+A F + L+
Sbjct: 279 KIDKA----HEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLE 330
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 339 INNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEA 391
+NNL N+ G +E+A++L+ K AL+ P ++ + S+ + + EA
Sbjct: 12 LNNLANIKREQGNIEEAVRLYRK--ALEVFPEFAAAHSNLASVLQQQGKLQEA 62
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 28/138 (20%)
Query: 242 GKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT- 300
K G + A+RL+DE + NG+Q + Y L+ + C+L
Sbjct: 37 SKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYV---------------------CSLAE 75
Query: 301 VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFN 360
T + GL R + +F M+ + P+ N + E A +
Sbjct: 76 AATESSPNPGLSR------GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVK 129
Query: 361 KMEALQCKPNVVTYNTVI 378
+M+A +P + +Y +
Sbjct: 130 QMKAFGIQPRLRSYGPAL 147
>pdb|2P61|A Chain A, Crystal Structure Of Protein Tm1646 From Thermotoga
Maritima, Pfam Duf327
Length = 162
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 21/154 (13%)
Query: 185 QIKSRKCKPTANTYNSM------ILMLMQEGYYEKI-HELYNEMCNEGNCFPDTVTYSAL 237
++K +K T+ S IL ++E ++EK+ E E+ + GN + T S
Sbjct: 17 EVKGKKSGKTSRVGESKKKEFFDILEDVKEDHFEKLLEEAVEEVIDSGNELVRSPTPS-- 74
Query: 238 ISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGC 297
L R +AI+ F ++ E KIY S G L +V+E+ K
Sbjct: 75 -----NLKRYKNAIKEFLKLIE------KKIYKLAGSFDMNSGRARLHL-VVEEVNEKLM 122
Query: 298 ALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331
LT + + A R+E+ GL +N+ +EG
Sbjct: 123 DLTEKIMKNEWQTINLAARIEEINGLILNLYREG 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,033,734
Number of Sequences: 62578
Number of extensions: 729576
Number of successful extensions: 1623
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1607
Number of HSP's gapped (non-prelim): 19
length of query: 638
length of database: 14,973,337
effective HSP length: 105
effective length of query: 533
effective length of database: 8,402,647
effective search space: 4478610851
effective search space used: 4478610851
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)