Query 006624
Match_columns 638
No_of_seqs 847 out of 3557
Neff 11.2
Searched_HMMs 46136
Date Thu Mar 28 12:07:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006624.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006624hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.1E-70 4.5E-75 589.3 69.2 502 123-630 368-895 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 5.2E-70 1.1E-74 586.2 67.6 509 102-618 383-916 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 7.9E-69 1.7E-73 590.0 58.2 509 103-635 166-675 (857)
4 PLN03077 Protein ECB2; Provisi 100.0 6.9E-69 1.5E-73 590.5 57.5 510 102-636 134-644 (857)
5 PLN03081 pentatricopeptide (PP 100.0 1.4E-63 3E-68 535.5 53.0 474 122-614 84-560 (697)
6 PLN03081 pentatricopeptide (PP 100.0 5.6E-63 1.2E-67 530.8 50.1 500 100-618 98-611 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-31 3E-36 302.5 70.8 517 100-636 374-890 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.4E-31 7.4E-36 299.2 68.8 512 102-632 308-819 (899)
9 PRK11447 cellulose synthase su 100.0 3.1E-23 6.8E-28 234.4 66.4 549 73-636 41-730 (1157)
10 PRK11447 cellulose synthase su 100.0 8.1E-23 1.8E-27 231.1 66.0 548 49-614 51-744 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 1.8E-23 4E-28 199.7 37.1 429 128-609 51-483 (966)
12 KOG4626 O-linked N-acetylgluco 99.9 8.6E-22 1.9E-26 188.4 41.4 435 103-593 62-501 (966)
13 PRK09782 bacteriophage N4 rece 99.9 6.7E-20 1.5E-24 197.9 58.8 506 102-636 57-696 (987)
14 TIGR00990 3a0801s09 mitochondr 99.9 3E-19 6.5E-24 189.8 52.7 431 126-575 128-570 (615)
15 KOG2002 TPR-containing nuclear 99.9 1E-18 2.2E-23 176.5 52.7 499 105-614 252-801 (1018)
16 PRK09782 bacteriophage N4 rece 99.9 1.4E-17 3E-22 180.1 61.9 430 167-617 189-710 (987)
17 KOG2002 TPR-containing nuclear 99.9 1E-18 2.3E-23 176.4 48.1 520 104-636 145-735 (1018)
18 PRK11788 tetratricopeptide rep 99.9 2.1E-20 4.6E-25 188.9 36.3 304 131-443 41-354 (389)
19 PRK11788 tetratricopeptide rep 99.9 4.2E-20 9.1E-25 186.7 36.3 306 238-582 42-353 (389)
20 PRK15174 Vi polysaccharide exp 99.9 3.5E-18 7.6E-23 180.9 48.9 333 128-471 45-381 (656)
21 PRK15174 Vi polysaccharide exp 99.9 3.5E-18 7.6E-23 180.9 48.7 335 162-506 44-381 (656)
22 TIGR00990 3a0801s09 mitochondr 99.9 1.4E-17 3.1E-22 177.1 50.6 432 161-611 128-571 (615)
23 PRK10049 pgaA outer membrane p 99.9 4.3E-17 9.4E-22 176.5 53.2 428 156-627 11-470 (765)
24 PRK10049 pgaA outer membrane p 99.9 1.9E-17 4E-22 179.3 49.1 406 121-576 11-456 (765)
25 PRK14574 hmsH outer membrane p 99.9 2.7E-16 5.9E-21 166.7 55.4 454 122-610 31-512 (822)
26 PRK14574 hmsH outer membrane p 99.9 1.7E-15 3.7E-20 160.7 57.4 447 101-583 46-518 (822)
27 KOG2003 TPR repeat-containing 99.8 2.2E-17 4.7E-22 152.8 34.0 482 127-633 203-710 (840)
28 KOG4422 Uncharacterized conser 99.8 3.4E-14 7.4E-19 131.1 42.2 444 126-613 117-592 (625)
29 KOG2076 RNA polymerase III tra 99.8 3.4E-13 7.3E-18 136.3 50.9 479 126-611 140-695 (895)
30 KOG4422 Uncharacterized conser 99.8 1.7E-13 3.7E-18 126.5 43.9 435 103-578 129-592 (625)
31 KOG0495 HAT repeat protein [RN 99.8 2.9E-12 6.2E-17 124.7 53.7 495 109-631 366-865 (913)
32 KOG2003 TPR repeat-containing 99.8 1.5E-15 3.2E-20 140.8 28.9 119 106-226 218-340 (840)
33 KOG2076 RNA polymerase III tra 99.7 1.4E-12 2.9E-17 132.0 49.9 359 101-467 151-551 (895)
34 KOG1915 Cell cycle control pro 99.7 4E-12 8.7E-17 119.1 46.9 450 159-623 72-546 (677)
35 KOG0495 HAT repeat protein [RN 99.7 3.5E-11 7.7E-16 117.3 51.9 454 137-609 418-878 (913)
36 KOG1915 Cell cycle control pro 99.7 5.3E-11 1.1E-15 111.8 50.5 456 102-575 86-584 (677)
37 KOG1155 Anaphase-promoting com 99.7 8.9E-12 1.9E-16 116.7 42.0 383 229-631 162-554 (559)
38 KOG1155 Anaphase-promoting com 99.6 2.8E-11 6.1E-16 113.4 39.5 165 407-574 364-534 (559)
39 KOG1173 Anaphase-promoting com 99.6 6.9E-11 1.5E-15 113.7 41.7 288 333-629 241-534 (611)
40 PRK10747 putative protoheme IX 99.6 5.5E-12 1.2E-16 126.1 35.7 288 208-539 97-388 (398)
41 COG2956 Predicted N-acetylgluc 99.6 4.8E-12 1E-16 113.0 30.7 300 126-435 37-346 (389)
42 KOG0547 Translocase of outer m 99.6 1.3E-11 2.9E-16 116.3 35.1 423 127-575 117-565 (606)
43 TIGR00540 hemY_coli hemY prote 99.6 5.8E-12 1.3E-16 126.7 35.1 292 206-538 95-396 (409)
44 KOG0547 Translocase of outer m 99.6 2.3E-11 5.1E-16 114.7 35.6 419 166-609 121-564 (606)
45 TIGR00540 hemY_coli hemY prote 99.6 1.2E-11 2.7E-16 124.4 35.6 290 172-469 96-397 (409)
46 PF13429 TPR_15: Tetratricopep 99.6 1.2E-14 2.7E-19 138.7 13.0 158 413-573 116-274 (280)
47 PRK10747 putative protoheme IX 99.6 2.4E-11 5.1E-16 121.6 36.7 283 138-470 97-389 (398)
48 PF13429 TPR_15: Tetratricopep 99.6 1.9E-14 4.1E-19 137.5 13.3 262 165-470 13-276 (280)
49 KOG1173 Anaphase-promoting com 99.6 1.9E-10 4.1E-15 110.8 39.1 284 300-592 243-532 (611)
50 KOG3785 Uncharacterized conser 99.6 1.9E-10 4.2E-15 104.1 35.9 453 132-620 29-497 (557)
51 KOG1126 DNA-binding cell divis 99.6 2.5E-12 5.4E-17 126.1 25.8 284 317-612 335-621 (638)
52 COG3071 HemY Uncharacterized e 99.5 1.5E-10 3.3E-15 107.0 34.2 286 208-540 97-389 (400)
53 KOG2047 mRNA splicing factor [ 99.5 1.4E-08 3.1E-13 99.4 48.7 400 126-540 139-614 (835)
54 KOG4318 Bicoid mRNA stability 99.5 3.8E-11 8.3E-16 121.1 31.6 220 116-350 16-285 (1088)
55 KOG1156 N-terminal acetyltrans 99.5 6.3E-09 1.4E-13 102.2 45.7 425 134-574 50-509 (700)
56 KOG1156 N-terminal acetyltrans 99.5 5.2E-09 1.1E-13 102.7 44.8 462 128-609 11-509 (700)
57 COG3071 HemY Uncharacterized e 99.5 9.8E-10 2.1E-14 101.8 37.8 287 172-470 96-389 (400)
58 KOG1126 DNA-binding cell divis 99.5 6.6E-12 1.4E-16 123.2 25.0 285 175-506 334-620 (638)
59 COG2956 Predicted N-acetylgluc 99.5 2.9E-10 6.4E-15 101.9 31.1 120 174-296 49-171 (389)
60 KOG3785 Uncharacterized conser 99.5 1.4E-09 2.9E-14 98.7 35.0 433 168-633 30-477 (557)
61 KOG2376 Signal recognition par 99.5 2.9E-09 6.2E-14 103.3 39.2 420 162-631 14-506 (652)
62 KOG2047 mRNA splicing factor [ 99.4 3.1E-08 6.6E-13 97.2 43.6 216 408-626 388-631 (835)
63 KOG1174 Anaphase-promoting com 99.4 4.4E-08 9.6E-13 91.0 41.8 273 333-618 229-505 (564)
64 TIGR02521 type_IV_pilW type IV 99.4 1.6E-10 3.4E-15 107.8 27.0 198 161-363 32-230 (234)
65 PRK12370 invasion protein regu 99.4 1.4E-10 2.9E-15 121.4 29.0 266 124-402 255-536 (553)
66 TIGR02521 type_IV_pilW type IV 99.4 1.9E-10 4.1E-15 107.2 27.3 203 124-330 30-232 (234)
67 PRK12370 invasion protein regu 99.4 5.1E-10 1.1E-14 117.1 32.5 268 157-437 253-536 (553)
68 KOG1129 TPR repeat-containing 99.4 3.5E-11 7.6E-16 107.6 19.5 230 129-366 227-459 (478)
69 PF12569 NARP1: NMDA receptor- 99.4 3.4E-09 7.4E-14 106.9 35.0 130 444-575 196-333 (517)
70 KOG2376 Signal recognition par 99.4 4.7E-08 1E-12 95.1 40.4 447 130-608 17-517 (652)
71 PF12569 NARP1: NMDA receptor- 99.4 1.1E-07 2.5E-12 96.1 43.2 295 130-435 9-333 (517)
72 KOG4162 Predicted calmodulin-b 99.4 3.6E-08 7.7E-13 99.0 38.4 429 156-610 319-782 (799)
73 KOG4162 Predicted calmodulin-b 99.3 3.9E-08 8.4E-13 98.7 36.6 438 118-576 316-783 (799)
74 KOG1840 Kinesin light chain [C 99.3 1.7E-09 3.7E-14 107.6 27.3 207 266-502 199-434 (508)
75 PF13041 PPR_2: PPR repeat fam 99.3 6E-12 1.3E-16 83.8 6.8 50 580-629 1-50 (50)
76 KOG1129 TPR repeat-containing 99.3 1E-09 2.2E-14 98.5 21.3 205 156-366 219-425 (478)
77 KOG0985 Vesicle coat protein c 99.3 8.8E-07 1.9E-11 91.4 44.0 211 406-637 983-1269(1666)
78 PF13041 PPR_2: PPR repeat fam 99.3 1.5E-11 3.3E-16 81.8 6.6 49 510-558 1-49 (50)
79 KOG1840 Kinesin light chain [C 99.3 6.3E-09 1.4E-13 103.7 27.6 245 160-434 199-477 (508)
80 KOG3617 WD40 and TPR repeat-co 99.2 7.9E-07 1.7E-11 89.8 41.2 454 102-611 741-1359(1416)
81 COG3063 PilF Tfp pilus assembl 99.2 1.1E-08 2.4E-13 87.8 24.2 198 162-364 37-235 (250)
82 COG3063 PilF Tfp pilus assembl 99.2 1.6E-08 3.5E-13 86.8 24.1 208 409-622 37-245 (250)
83 KOG4318 Bicoid mRNA stability 99.2 1.9E-07 4E-12 95.2 35.5 478 122-628 80-641 (1088)
84 PRK11189 lipoprotein NlpI; Pro 99.2 2.2E-08 4.9E-13 95.8 28.2 197 125-331 64-266 (296)
85 KOG1127 TPR repeat-containing 99.2 2.7E-07 5.9E-12 95.2 36.5 464 125-609 492-994 (1238)
86 PRK11189 lipoprotein NlpI; Pro 99.2 2E-08 4.4E-13 96.1 26.4 233 133-376 34-275 (296)
87 KOG4340 Uncharacterized conser 99.2 4.3E-07 9.3E-12 80.9 31.8 292 127-432 12-335 (459)
88 KOG1914 mRNA cleavage and poly 99.2 3.5E-06 7.6E-11 81.5 39.0 439 122-610 17-500 (656)
89 cd05804 StaR_like StaR_like; a 99.2 4E-07 8.8E-12 90.8 35.1 197 162-364 8-214 (355)
90 KOG1174 Anaphase-promoting com 99.1 4.4E-06 9.5E-11 78.1 37.9 303 229-541 192-500 (564)
91 KOG0548 Molecular co-chaperone 99.1 3.2E-06 7E-11 81.9 35.3 105 132-241 9-114 (539)
92 KOG4340 Uncharacterized conser 99.1 2.7E-07 5.9E-12 82.1 25.7 316 162-503 12-336 (459)
93 KOG0548 Molecular co-chaperone 99.1 2E-06 4.4E-11 83.3 33.7 383 102-506 15-455 (539)
94 KOG0985 Vesicle coat protein c 99.0 3.2E-05 6.8E-10 80.4 42.4 282 194-528 983-1265(1666)
95 cd05804 StaR_like StaR_like; a 99.0 2.3E-06 5E-11 85.3 34.4 201 124-330 5-215 (355)
96 KOG1127 TPR repeat-containing 99.0 8.1E-06 1.8E-10 84.7 37.8 443 141-606 474-947 (1238)
97 PRK04841 transcriptional regul 99.0 4E-06 8.6E-11 94.9 40.3 335 241-576 384-760 (903)
98 KOG0624 dsRNA-activated protei 99.0 7.7E-06 1.7E-10 74.6 33.4 331 123-506 36-370 (504)
99 PRK04841 transcriptional regul 99.0 7.3E-06 1.6E-10 92.8 40.4 371 238-612 348-761 (903)
100 KOG0624 dsRNA-activated protei 99.0 3.2E-05 6.9E-10 70.7 35.2 302 194-541 37-370 (504)
101 KOG3617 WD40 and TPR repeat-co 98.9 0.0001 2.2E-09 75.2 42.6 51 527-577 1306-1360(1416)
102 KOG3616 Selective LIM binding 98.9 7.5E-06 1.6E-10 82.0 31.7 267 272-576 738-1024(1636)
103 KOG1125 TPR repeat-containing 98.9 1.5E-06 3.2E-11 85.0 25.1 261 273-568 292-563 (579)
104 PF04733 Coatomer_E: Coatomer 98.9 1.9E-07 4E-12 88.1 18.5 148 451-609 111-263 (290)
105 PLN02789 farnesyltranstransfer 98.9 3.2E-06 7E-11 80.8 26.7 215 127-348 39-267 (320)
106 PF04733 Coatomer_E: Coatomer 98.9 1.7E-07 3.6E-12 88.4 17.3 250 135-400 11-264 (290)
107 COG5010 TadD Flp pilus assembl 98.8 1E-06 2.2E-11 77.7 20.4 178 143-328 52-229 (257)
108 KOG3616 Selective LIM binding 98.8 1.6E-05 3.5E-10 79.7 28.2 137 343-502 739-875 (1636)
109 KOG1128 Uncharacterized conser 98.8 5E-06 1.1E-10 83.6 24.6 189 409-610 426-615 (777)
110 KOG1125 TPR repeat-containing 98.7 3.1E-06 6.8E-11 82.8 22.2 249 133-388 293-559 (579)
111 TIGR03302 OM_YfiO outer membra 98.7 4.2E-06 9.1E-11 77.8 21.7 188 122-330 30-232 (235)
112 PLN02789 farnesyltranstransfer 98.7 2.4E-05 5.2E-10 74.9 26.5 211 95-313 43-267 (320)
113 KOG2053 Mitochondrial inherita 98.7 0.00075 1.6E-08 70.0 48.8 222 103-333 23-258 (932)
114 PF12854 PPR_1: PPR repeat 98.7 2.8E-08 6E-13 59.1 4.1 32 577-608 2-33 (34)
115 PRK14720 transcript cleavage f 98.7 1.2E-05 2.5E-10 85.8 26.0 239 157-453 28-268 (906)
116 TIGR03302 OM_YfiO outer membra 98.7 5.7E-06 1.2E-10 76.9 21.5 189 157-365 30-232 (235)
117 KOG1070 rRNA processing protei 98.7 1.5E-05 3.2E-10 85.7 26.1 204 123-333 1456-1666(1710)
118 KOG1914 mRNA cleavage and poly 98.6 0.00061 1.3E-08 66.6 41.1 175 458-634 309-489 (656)
119 PF12854 PPR_1: PPR repeat 98.6 5.3E-08 1.1E-12 57.9 4.4 32 542-573 2-33 (34)
120 PRK15179 Vi polysaccharide bio 98.6 1E-05 2.2E-10 85.5 24.2 149 120-273 81-229 (694)
121 PRK15179 Vi polysaccharide bio 98.6 2.2E-05 4.8E-10 83.0 26.2 236 124-383 27-267 (694)
122 KOG3081 Vesicle coat complex C 98.6 6.3E-05 1.4E-09 66.6 23.9 246 138-401 21-271 (299)
123 KOG1070 rRNA processing protei 98.6 5.1E-05 1.1E-09 81.8 27.5 232 337-573 1459-1697(1710)
124 PRK15359 type III secretion sy 98.6 5.7E-06 1.2E-10 69.5 16.8 96 198-296 27-122 (144)
125 KOG3081 Vesicle coat complex C 98.6 4.1E-05 8.8E-10 67.8 22.0 173 392-575 93-270 (299)
126 COG5010 TadD Flp pilus assembl 98.6 1.8E-05 3.9E-10 70.1 19.9 165 194-364 66-230 (257)
127 KOG2053 Mitochondrial inherita 98.6 0.0017 3.6E-08 67.6 49.5 223 136-366 20-256 (932)
128 PRK10370 formate-dependent nit 98.6 1.4E-05 3E-10 71.1 19.7 120 173-296 52-174 (198)
129 PRK10370 formate-dependent nit 98.5 2E-05 4.4E-10 70.1 20.3 120 208-331 52-174 (198)
130 PRK14720 transcript cleavage f 98.5 7.5E-05 1.6E-09 79.8 27.1 238 300-593 30-268 (906)
131 KOG1128 Uncharacterized conser 98.5 8.6E-06 1.9E-10 81.9 18.7 215 128-364 401-615 (777)
132 PRK15359 type III secretion sy 98.5 9.9E-06 2.2E-10 68.1 15.3 94 130-225 29-122 (144)
133 KOG3060 Uncharacterized conser 98.4 0.00036 7.7E-09 61.5 23.2 164 162-330 54-220 (289)
134 COG4783 Putative Zn-dependent 98.4 0.00019 4.2E-09 69.4 22.7 112 417-531 316-427 (484)
135 KOG3060 Uncharacterized conser 98.3 0.00094 2E-08 59.0 23.1 180 392-575 32-219 (289)
136 COG4783 Putative Zn-dependent 98.3 0.00042 9.2E-09 67.1 22.9 120 240-362 315-434 (484)
137 TIGR02552 LcrH_SycD type III s 98.3 4.5E-05 9.8E-10 63.7 15.0 95 162-259 19-113 (135)
138 TIGR02552 LcrH_SycD type III s 98.2 6.8E-05 1.5E-09 62.7 15.2 21 519-539 92-112 (135)
139 PF09976 TPR_21: Tetratricopep 98.2 0.00014 3E-09 61.5 15.5 87 202-291 55-143 (145)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00012 2.7E-09 71.4 15.9 126 161-293 170-295 (395)
141 TIGR00756 PPR pentatricopeptid 98.1 6.5E-06 1.4E-10 49.8 4.2 33 584-616 2-34 (35)
142 PF09976 TPR_21: Tetratricopep 98.1 0.00037 8E-09 58.8 16.3 119 207-327 23-144 (145)
143 KOG0550 Molecular chaperone (D 98.0 0.01 2.2E-07 56.4 26.3 288 168-507 57-351 (486)
144 KOG2041 WD40 repeat protein [G 98.0 0.016 3.4E-07 58.8 28.9 157 174-362 748-904 (1189)
145 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00024 5.1E-09 69.6 16.2 124 234-363 172-295 (395)
146 TIGR00756 PPR pentatricopeptid 98.0 1.4E-05 3.1E-10 48.3 4.5 33 514-546 2-34 (35)
147 PF13812 PPR_3: Pentatricopept 98.0 1.6E-05 3.5E-10 47.6 4.5 33 583-615 2-34 (34)
148 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00053 1.2E-08 55.7 13.8 97 163-259 5-104 (119)
149 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.0006 1.3E-08 55.3 13.9 101 126-226 3-107 (119)
150 PF13812 PPR_3: Pentatricopept 97.8 3E-05 6.6E-10 46.4 4.3 31 514-544 3-33 (34)
151 PF10037 MRP-S27: Mitochondria 97.8 0.00038 8.1E-09 68.4 13.9 124 437-560 61-186 (429)
152 cd00189 TPR Tetratricopeptide 97.8 0.00035 7.7E-09 53.8 11.5 88 202-292 7-94 (100)
153 PRK10866 outer membrane biogen 97.8 0.014 2.9E-07 53.9 23.1 184 159-363 31-239 (243)
154 KOG0553 TPR repeat-containing 97.8 0.001 2.2E-08 60.5 15.0 98 168-270 89-186 (304)
155 COG4700 Uncharacterized protei 97.8 0.0082 1.8E-07 50.4 18.8 127 193-322 87-214 (251)
156 PRK15363 pathogenicity island 97.8 0.00076 1.6E-08 55.8 12.7 97 161-260 36-132 (157)
157 cd00189 TPR Tetratricopeptide 97.8 0.00044 9.6E-09 53.2 11.3 92 165-259 5-96 (100)
158 PF10037 MRP-S27: Mitochondria 97.8 0.00041 8.9E-09 68.2 12.9 124 472-595 61-186 (429)
159 PRK10866 outer membrane biogen 97.8 0.014 2.9E-07 54.0 22.0 184 124-328 31-239 (243)
160 PF12895 Apc3: Anaphase-promot 97.7 5.4E-05 1.2E-09 56.9 5.2 20 201-220 31-50 (84)
161 PRK02603 photosystem I assembl 97.7 0.0019 4.2E-08 56.3 15.6 88 196-284 36-124 (172)
162 KOG0550 Molecular chaperone (D 97.7 0.012 2.7E-07 55.9 21.2 273 275-575 58-349 (486)
163 PF08579 RPM2: Mitochondrial r 97.7 0.0008 1.7E-08 51.4 11.0 76 554-629 32-116 (120)
164 PF01535 PPR: PPR repeat; Int 97.7 4.5E-05 9.7E-10 44.5 3.4 29 584-612 2-30 (31)
165 PF08579 RPM2: Mitochondrial r 97.7 0.00068 1.5E-08 51.8 10.1 76 307-382 31-115 (120)
166 PRK02603 photosystem I assembl 97.7 0.0026 5.6E-08 55.5 15.5 91 124-215 34-126 (172)
167 PLN03088 SGT1, suppressor of 97.7 0.0012 2.7E-08 64.9 14.8 87 170-259 12-98 (356)
168 PLN03088 SGT1, suppressor of 97.7 0.0013 2.8E-08 64.7 14.8 91 133-225 10-100 (356)
169 PF12895 Apc3: Anaphase-promot 97.7 9.8E-05 2.1E-09 55.5 5.3 80 525-607 2-83 (84)
170 CHL00033 ycf3 photosystem I as 97.6 0.0015 3.3E-08 56.8 13.4 95 512-607 35-138 (168)
171 KOG0553 TPR repeat-containing 97.6 0.0031 6.8E-08 57.4 15.2 103 275-381 90-192 (304)
172 CHL00033 ycf3 photosystem I as 97.6 0.0011 2.4E-08 57.7 12.4 79 162-242 37-117 (168)
173 PF14938 SNAP: Soluble NSF att 97.6 0.025 5.3E-07 53.9 22.5 94 515-608 158-263 (282)
174 PF05843 Suf: Suppressor of fo 97.6 0.0012 2.6E-08 62.5 13.2 132 126-259 2-135 (280)
175 PRK15363 pathogenicity island 97.6 0.0016 3.5E-08 53.9 11.9 97 266-364 35-131 (157)
176 PF01535 PPR: PPR repeat; Int 97.6 9.5E-05 2.1E-09 43.1 3.4 26 515-540 3-28 (31)
177 PF05843 Suf: Suppressor of fo 97.6 0.0024 5.1E-08 60.6 14.5 131 408-541 2-136 (280)
178 KOG2041 WD40 repeat protein [G 97.5 0.14 3E-06 52.4 29.5 176 157-361 689-877 (1189)
179 PRK10153 DNA-binding transcrip 97.5 0.0058 1.3E-07 62.9 17.8 144 402-575 332-481 (517)
180 COG5107 RNA14 Pre-mRNA 3'-end 97.5 0.099 2.1E-06 50.6 39.6 150 477-632 397-550 (660)
181 PF12688 TPR_5: Tetratrico pep 97.5 0.008 1.7E-07 48.0 14.3 58 167-224 8-67 (120)
182 KOG2796 Uncharacterized conser 97.5 0.039 8.4E-07 49.3 19.5 179 135-330 132-315 (366)
183 PF14938 SNAP: Soluble NSF att 97.5 0.012 2.7E-07 56.0 18.3 126 237-363 120-264 (282)
184 PF13432 TPR_16: Tetratricopep 97.5 0.0005 1.1E-08 48.6 6.7 58 167-225 4-61 (65)
185 PRK10153 DNA-binding transcrip 97.5 0.012 2.6E-07 60.7 19.2 138 190-331 332-483 (517)
186 KOG1130 Predicted G-alpha GTPa 97.4 0.0036 7.9E-08 59.2 13.5 97 408-504 236-342 (639)
187 PF13525 YfiO: Outer membrane 97.4 0.014 2.9E-07 52.5 17.2 173 161-355 6-197 (203)
188 COG4700 Uncharacterized protei 97.4 0.066 1.4E-06 45.3 19.3 132 123-257 87-219 (251)
189 PF07079 DUF1347: Protein of u 97.4 0.16 3.5E-06 49.3 47.3 453 134-622 15-530 (549)
190 KOG1130 Predicted G-alpha GTPa 97.4 0.0061 1.3E-07 57.7 13.8 133 408-540 196-343 (639)
191 PF06239 ECSIT: Evolutionarily 97.3 0.003 6.4E-08 54.9 10.9 88 509-596 44-152 (228)
192 PF14559 TPR_19: Tetratricopep 97.3 0.00076 1.6E-08 48.2 6.4 51 173-224 4-54 (68)
193 KOG2796 Uncharacterized conser 97.3 0.11 2.4E-06 46.5 22.4 143 233-378 179-326 (366)
194 PF06239 ECSIT: Evolutionarily 97.3 0.0039 8.5E-08 54.2 11.1 104 229-351 45-153 (228)
195 PF12688 TPR_5: Tetratrico pep 97.3 0.017 3.8E-07 46.1 14.0 109 129-242 5-117 (120)
196 PF13414 TPR_11: TPR repeat; P 97.3 0.0011 2.5E-08 47.4 6.7 59 197-257 5-64 (69)
197 COG4235 Cytochrome c biogenesi 97.3 0.016 3.6E-07 53.2 15.3 99 230-330 155-256 (287)
198 PF14559 TPR_19: Tetratricopep 97.2 0.0011 2.4E-08 47.3 6.2 53 206-260 2-54 (68)
199 COG4235 Cytochrome c biogenesi 97.2 0.0096 2.1E-07 54.7 13.3 101 157-260 153-256 (287)
200 PF13414 TPR_11: TPR repeat; P 97.2 0.002 4.3E-08 46.1 7.1 65 159-224 2-67 (69)
201 PF13525 YfiO: Outer membrane 97.2 0.07 1.5E-06 47.9 18.6 177 125-321 5-198 (203)
202 PF13432 TPR_16: Tetratricopep 97.2 0.002 4.3E-08 45.5 6.9 58 201-260 3-60 (65)
203 PRK10803 tol-pal system protei 97.0 0.017 3.7E-07 53.8 13.4 98 163-260 146-246 (263)
204 PRK10803 tol-pal system protei 97.0 0.017 3.6E-07 53.8 13.2 100 197-296 145-247 (263)
205 KOG1538 Uncharacterized conser 96.9 0.25 5.4E-06 50.2 20.8 88 443-541 748-846 (1081)
206 COG3898 Uncharacterized membra 96.9 0.45 9.7E-06 45.5 33.1 216 103-335 67-297 (531)
207 PF13371 TPR_9: Tetratricopept 96.8 0.0059 1.3E-07 44.2 7.2 56 169-225 4-59 (73)
208 PF04840 Vps16_C: Vps16, C-ter 96.8 0.52 1.1E-05 45.3 30.3 109 444-572 179-287 (319)
209 PRK15331 chaperone protein Sic 96.8 0.11 2.3E-06 43.6 14.6 94 164-260 41-134 (165)
210 COG4105 ComL DNA uptake lipopr 96.8 0.4 8.7E-06 43.4 20.8 181 163-364 37-232 (254)
211 PF13281 DUF4071: Domain of un 96.7 0.4 8.6E-06 46.6 20.2 94 130-223 146-254 (374)
212 KOG2114 Vacuolar assembly/sort 96.7 1 2.2E-05 47.5 29.5 215 126-362 284-516 (933)
213 PF13424 TPR_12: Tetratricopep 96.6 0.0075 1.6E-07 44.4 6.4 26 197-222 7-32 (78)
214 PF12921 ATP13: Mitochondrial 96.6 0.057 1.2E-06 43.7 11.7 100 511-630 1-101 (126)
215 KOG1538 Uncharacterized conser 96.6 0.46 1E-05 48.3 20.0 102 300-437 746-847 (1081)
216 COG3898 Uncharacterized membra 96.6 0.74 1.6E-05 44.0 31.7 252 349-617 133-398 (531)
217 PF03704 BTAD: Bacterial trans 96.5 0.09 2E-06 44.3 13.4 72 549-621 64-140 (146)
218 PF13424 TPR_12: Tetratricopep 96.5 0.0092 2E-07 43.9 6.2 62 548-609 6-73 (78)
219 PF13371 TPR_9: Tetratricopept 96.5 0.019 4E-07 41.6 7.8 56 203-260 3-58 (73)
220 PF03704 BTAD: Bacterial trans 96.5 0.031 6.8E-07 47.2 10.2 70 197-268 64-138 (146)
221 PF13281 DUF4071: Domain of un 96.4 0.89 1.9E-05 44.3 20.3 76 412-487 146-227 (374)
222 PRK15331 chaperone protein Sic 96.4 0.28 6.1E-06 41.2 14.6 92 271-364 42-133 (165)
223 KOG2280 Vacuolar assembly/sort 96.3 1.7 3.7E-05 45.4 31.9 101 153-256 425-532 (829)
224 KOG2114 Vacuolar assembly/sort 96.3 1.9 4E-05 45.8 24.9 179 125-327 334-516 (933)
225 KOG1941 Acetylcholine receptor 96.3 0.53 1.2E-05 44.4 17.2 205 125-329 43-274 (518)
226 COG3118 Thioredoxin domain-con 96.2 0.73 1.6E-05 42.6 17.6 123 169-295 143-265 (304)
227 COG5107 RNA14 Pre-mRNA 3'-end 96.2 1.5 3.1E-05 43.0 32.9 119 512-634 397-519 (660)
228 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.092 2E-06 51.7 12.1 67 157-224 72-141 (453)
229 COG1729 Uncharacterized protei 96.1 0.076 1.6E-06 48.3 10.7 98 162-260 144-244 (262)
230 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.094 2E-06 51.6 12.0 66 122-189 72-141 (453)
231 PF09205 DUF1955: Domain of un 96.1 0.57 1.2E-05 37.3 14.8 66 547-613 86-151 (161)
232 PF08631 SPO22: Meiosis protei 96.0 1.4 3.1E-05 41.8 26.4 162 136-301 4-192 (278)
233 PF13512 TPR_18: Tetratricopep 96.0 0.24 5.3E-06 40.5 12.3 84 160-244 10-95 (142)
234 PF07079 DUF1347: Protein of u 96.0 1.8 3.8E-05 42.5 44.0 128 452-587 389-530 (549)
235 KOG2610 Uncharacterized conser 96.0 0.6 1.3E-05 43.6 15.9 154 205-362 113-273 (491)
236 KOG0543 FKBP-type peptidyl-pro 95.9 0.41 8.9E-06 46.2 15.2 140 342-505 214-354 (397)
237 KOG0543 FKBP-type peptidyl-pro 95.9 0.14 3E-06 49.2 12.1 96 195-294 257-354 (397)
238 KOG4555 TPR repeat-containing 95.8 0.27 5.9E-06 38.9 11.1 92 168-261 51-145 (175)
239 COG1729 Uncharacterized protei 95.7 0.18 4E-06 45.9 11.5 99 127-226 144-246 (262)
240 PF12921 ATP13: Mitochondrial 95.7 0.32 6.9E-06 39.4 11.6 99 124-242 1-99 (126)
241 KOG1258 mRNA processing protei 95.7 3 6.5E-05 42.6 37.9 92 201-294 85-179 (577)
242 PF13512 TPR_18: Tetratricopep 95.6 0.34 7.3E-06 39.7 11.6 86 125-210 10-97 (142)
243 PF10300 DUF3808: Protein of u 95.6 0.78 1.7E-05 47.1 17.1 116 491-609 247-374 (468)
244 PF10300 DUF3808: Protein of u 95.5 1.1 2.4E-05 46.1 17.9 162 410-574 191-374 (468)
245 PF04053 Coatomer_WDAD: Coatom 95.5 0.31 6.8E-06 49.2 13.7 157 133-326 269-427 (443)
246 PF04053 Coatomer_WDAD: Coatom 95.5 0.52 1.1E-05 47.6 15.1 157 417-608 271-428 (443)
247 smart00299 CLH Clathrin heavy 95.3 1.5 3.1E-05 36.6 15.5 23 516-538 73-95 (140)
248 PF04840 Vps16_C: Vps16, C-ter 95.3 3 6.6E-05 40.2 30.7 101 414-534 184-284 (319)
249 COG0457 NrfG FOG: TPR repeat [ 95.2 2.3 5.1E-05 38.8 28.4 224 138-364 36-264 (291)
250 PF13170 DUF4003: Protein of u 95.2 2.2 4.9E-05 40.6 17.6 130 176-307 78-223 (297)
251 KOG1585 Protein required for f 95.0 2.6 5.6E-05 37.8 17.2 209 124-360 30-251 (308)
252 PRK11906 transcriptional regul 95.0 2.2 4.7E-05 42.5 16.9 118 106-225 275-402 (458)
253 KOG4555 TPR repeat-containing 94.9 1.3 2.8E-05 35.3 12.2 89 276-366 53-145 (175)
254 PF08631 SPO22: Meiosis protei 94.9 3.5 7.6E-05 39.2 26.4 63 267-330 85-150 (278)
255 PRK11906 transcriptional regul 94.9 4.6 9.9E-05 40.3 19.3 163 196-361 252-432 (458)
256 KOG1585 Protein required for f 94.9 2.7 5.8E-05 37.7 15.4 193 161-380 32-237 (308)
257 KOG1941 Acetylcholine receptor 94.8 2 4.3E-05 40.8 15.3 202 162-363 45-273 (518)
258 COG3118 Thioredoxin domain-con 94.7 3.6 7.7E-05 38.2 17.8 30 546-575 235-264 (304)
259 smart00299 CLH Clathrin heavy 94.7 2.1 4.6E-05 35.6 15.4 9 281-289 111-119 (140)
260 PF13428 TPR_14: Tetratricopep 94.7 0.11 2.5E-06 32.9 5.2 28 198-225 4-31 (44)
261 PF09205 DUF1955: Domain of un 94.7 1.8 3.9E-05 34.6 14.9 66 407-473 86-151 (161)
262 PF13428 TPR_14: Tetratricopep 94.6 0.12 2.7E-06 32.7 5.2 40 161-201 2-41 (44)
263 COG3629 DnrI DNA-binding trans 94.6 0.22 4.8E-06 46.2 8.8 78 126-204 154-236 (280)
264 COG4649 Uncharacterized protei 94.6 2.4 5.3E-05 35.7 15.6 125 170-295 68-196 (221)
265 KOG3941 Intermediate in Toll s 94.6 0.34 7.3E-06 44.1 9.5 104 510-632 65-173 (406)
266 KOG3941 Intermediate in Toll s 94.5 0.54 1.2E-05 42.8 10.6 106 439-563 64-174 (406)
267 KOG1258 mRNA processing protei 94.5 6.6 0.00014 40.3 37.1 135 124-260 44-180 (577)
268 COG4649 Uncharacterized protei 94.4 2.8 6E-05 35.4 15.0 136 123-260 57-196 (221)
269 KOG2610 Uncharacterized conser 94.3 1.5 3.2E-05 41.1 13.0 155 418-574 114-274 (491)
270 COG4105 ComL DNA uptake lipopr 94.2 4.2 9.1E-05 37.0 20.9 71 242-312 45-117 (254)
271 KOG1920 IkappaB kinase complex 94.2 4.9 0.00011 44.6 18.6 158 174-363 894-1053(1265)
272 PF04184 ST7: ST7 protein; In 94.1 6.3 0.00014 39.6 17.7 60 269-328 262-322 (539)
273 PF13170 DUF4003: Protein of u 93.8 6.3 0.00014 37.6 17.0 139 142-282 79-233 (297)
274 PF04184 ST7: ST7 protein; In 93.8 8.3 0.00018 38.8 20.9 60 411-470 263-323 (539)
275 PF02284 COX5A: Cytochrome c o 93.2 2.1 4.5E-05 32.5 9.9 62 565-627 28-89 (108)
276 PF10602 RPN7: 26S proteasome 93.1 1.7 3.8E-05 37.8 11.3 96 479-574 38-140 (177)
277 KOG1586 Protein required for f 93.1 6.1 0.00013 35.3 15.0 24 593-616 165-188 (288)
278 COG3629 DnrI DNA-binding trans 92.9 1.3 2.9E-05 41.1 10.7 79 195-275 153-236 (280)
279 COG0457 NrfG FOG: TPR repeat [ 92.8 7.2 0.00016 35.4 30.3 119 209-328 37-157 (291)
280 PF10345 Cohesin_load: Cohesin 92.7 17 0.00036 39.2 40.8 477 106-609 38-604 (608)
281 KOG2396 HAT (Half-A-TPR) repea 92.7 12 0.00026 37.5 37.4 408 108-541 90-559 (568)
282 COG4785 NlpI Lipoprotein NlpI, 92.7 6.7 0.00015 34.6 15.6 69 157-226 96-164 (297)
283 PRK09687 putative lyase; Provi 92.6 9.5 0.00021 36.2 28.8 203 406-629 67-279 (280)
284 PF10602 RPN7: 26S proteasome 92.6 2.1 4.5E-05 37.3 11.0 97 513-609 37-140 (177)
285 cd00923 Cyt_c_Oxidase_Va Cytoc 92.5 1.1 2.3E-05 33.6 7.5 63 564-627 24-86 (103)
286 KOG2280 Vacuolar assembly/sort 92.5 16 0.00035 38.6 35.8 100 189-291 426-532 (829)
287 COG1747 Uncharacterized N-term 92.4 13 0.00029 37.3 21.0 182 122-311 63-249 (711)
288 KOG1550 Extracellular protein 92.2 18 0.00038 38.4 24.9 147 211-366 228-394 (552)
289 PF13176 TPR_7: Tetratricopept 92.2 0.35 7.6E-06 28.9 4.1 26 197-222 1-26 (36)
290 PF13176 TPR_7: Tetratricopept 92.0 0.39 8.4E-06 28.8 4.1 26 584-609 1-26 (36)
291 PF10345 Cohesin_load: Cohesin 91.9 21 0.00045 38.5 34.8 165 268-434 61-252 (608)
292 COG2909 MalT ATP-dependent tra 91.4 24 0.00053 38.3 28.0 226 242-467 426-684 (894)
293 PF07035 Mic1: Colon cancer-as 91.3 8.4 0.00018 32.9 14.3 97 185-292 19-115 (167)
294 PF13431 TPR_17: Tetratricopep 91.1 0.27 5.9E-06 29.0 2.8 21 194-214 12-32 (34)
295 COG2976 Uncharacterized protei 90.9 10 0.00022 33.0 13.2 91 167-260 96-188 (207)
296 KOG1920 IkappaB kinase complex 90.8 33 0.00071 38.6 27.0 81 413-504 971-1053(1265)
297 KOG2063 Vacuolar assembly/sort 90.5 31 0.00066 38.1 18.9 28 127-154 506-533 (877)
298 KOG0276 Vesicle coat complex C 90.4 8 0.00017 39.6 13.4 134 160-327 614-747 (794)
299 PRK15180 Vi polysaccharide bio 90.2 21 0.00046 35.6 29.5 122 136-261 300-421 (831)
300 PF04097 Nic96: Nup93/Nic96; 89.7 32 0.0007 37.0 20.6 92 520-616 422-536 (613)
301 PF09613 HrpB1_HrpK: Bacterial 89.3 12 0.00026 31.5 14.0 16 524-539 56-71 (160)
302 COG4785 NlpI Lipoprotein NlpI, 89.1 15 0.00033 32.5 16.1 175 177-364 82-265 (297)
303 PF00515 TPR_1: Tetratricopept 89.0 1.1 2.5E-05 26.1 4.3 30 196-225 2-31 (34)
304 KOG4234 TPR repeat-containing 88.9 5.3 0.00011 34.7 9.5 93 132-226 102-199 (271)
305 PF02284 COX5A: Cytochrome c o 88.9 5.7 0.00012 30.2 8.5 60 143-203 28-87 (108)
306 PF07035 Mic1: Colon cancer-as 88.9 14 0.0003 31.6 16.0 101 392-503 14-115 (167)
307 PF09613 HrpB1_HrpK: Bacterial 88.8 13 0.00029 31.3 13.8 19 205-223 54-72 (160)
308 PF13431 TPR_17: Tetratricopep 88.5 0.69 1.5E-05 27.2 3.1 23 229-251 11-33 (34)
309 cd00923 Cyt_c_Oxidase_Va Cytoc 88.4 4 8.6E-05 30.7 7.4 61 142-203 24-84 (103)
310 COG3947 Response regulator con 87.8 23 0.00051 33.0 16.6 58 234-292 282-339 (361)
311 COG2976 Uncharacterized protei 87.6 18 0.0004 31.5 14.9 87 203-295 97-188 (207)
312 PF02259 FAT: FAT domain; Int 87.5 31 0.00067 34.0 21.1 66 264-329 144-212 (352)
313 KOG4570 Uncharacterized conser 87.5 2.8 6E-05 39.1 7.5 106 119-226 58-166 (418)
314 KOG0276 Vesicle coat complex C 87.4 9.9 0.00021 39.0 11.8 132 127-292 616-747 (794)
315 PF00515 TPR_1: Tetratricopept 87.4 1.1 2.3E-05 26.2 3.5 26 584-609 3-28 (34)
316 PF07719 TPR_2: Tetratricopept 87.3 1.7 3.6E-05 25.2 4.3 29 197-225 3-31 (34)
317 TIGR02561 HrpB1_HrpK type III 87.2 16 0.00034 30.3 11.6 18 206-223 55-72 (153)
318 PF00637 Clathrin: Region in C 87.1 0.29 6.3E-06 41.0 1.2 129 483-633 13-141 (143)
319 PF07719 TPR_2: Tetratricopept 87.0 1.2 2.5E-05 25.9 3.5 27 584-610 3-29 (34)
320 KOG4648 Uncharacterized conser 86.8 2.1 4.5E-05 40.3 6.5 54 168-223 105-159 (536)
321 KOG4570 Uncharacterized conser 86.4 3.3 7.1E-05 38.6 7.4 100 194-295 63-164 (418)
322 PF06552 TOM20_plant: Plant sp 86.2 17 0.00036 31.3 10.9 57 196-261 70-137 (186)
323 COG3947 Response regulator con 86.0 30 0.00064 32.3 16.6 71 550-621 282-357 (361)
324 KOG2396 HAT (Half-A-TPR) repea 85.9 42 0.00092 34.0 39.4 99 509-610 456-558 (568)
325 PF11207 DUF2989: Protein of u 85.8 12 0.00027 32.8 10.3 73 177-250 123-197 (203)
326 PF13374 TPR_10: Tetratricopep 85.6 2.2 4.7E-05 26.2 4.5 28 196-223 3-30 (42)
327 PF13374 TPR_10: Tetratricopep 85.5 2.2 4.7E-05 26.2 4.5 28 583-610 3-30 (42)
328 PF11207 DUF2989: Protein of u 84.9 25 0.00054 31.0 11.7 73 142-215 123-198 (203)
329 KOG2471 TPR repeat-containing 84.7 28 0.00061 34.9 13.1 38 520-558 343-380 (696)
330 KOG1550 Extracellular protein 84.4 60 0.0013 34.5 28.1 150 172-331 261-427 (552)
331 PF07575 Nucleopor_Nup85: Nup8 84.3 46 0.00099 35.5 16.1 44 106-150 114-173 (566)
332 KOG4234 TPR repeat-containing 83.8 19 0.00041 31.5 10.2 23 202-224 102-124 (271)
333 KOG2066 Vacuolar assembly/sort 83.3 70 0.0015 34.4 31.8 169 166-364 362-533 (846)
334 KOG4077 Cytochrome c oxidase, 82.2 11 0.00023 30.1 7.5 61 565-626 67-127 (149)
335 COG4455 ImpE Protein of avirul 82.1 10 0.00022 33.5 8.2 56 201-258 7-62 (273)
336 KOG4648 Uncharacterized conser 81.6 4.6 0.0001 38.1 6.3 92 132-225 104-195 (536)
337 PF13174 TPR_6: Tetratricopept 81.2 2.9 6.3E-05 23.9 3.5 26 200-225 5-30 (33)
338 COG4455 ImpE Protein of avirul 80.9 12 0.00027 33.1 8.3 76 128-204 4-81 (273)
339 PF06552 TOM20_plant: Plant sp 80.9 17 0.00036 31.3 8.9 76 211-296 51-137 (186)
340 TIGR02508 type_III_yscG type I 80.7 23 0.0005 27.0 8.6 78 528-612 21-98 (115)
341 TIGR03504 FimV_Cterm FimV C-te 80.4 3.3 7.1E-05 26.1 3.5 22 553-574 5-26 (44)
342 KOG0890 Protein kinase of the 79.9 1.6E+02 0.0036 36.4 36.3 317 130-471 1388-1731(2382)
343 PF02259 FAT: FAT domain; Int 79.7 65 0.0014 31.7 26.1 65 406-470 145-212 (352)
344 KOG2471 TPR repeat-containing 79.6 56 0.0012 33.0 13.1 107 487-595 250-382 (696)
345 PF07721 TPR_4: Tetratricopept 79.2 2.8 6.1E-05 22.7 2.7 21 586-606 5-25 (26)
346 TIGR02561 HrpB1_HrpK type III 79.2 36 0.00077 28.3 12.5 53 207-261 22-74 (153)
347 PF07575 Nucleopor_Nup85: Nup8 78.7 98 0.0021 33.1 17.3 34 593-626 506-539 (566)
348 PF13181 TPR_8: Tetratricopept 78.4 6.5 0.00014 22.7 4.4 27 197-223 3-29 (34)
349 TIGR02508 type_III_yscG type I 78.3 28 0.0006 26.6 8.7 11 172-182 51-61 (115)
350 KOG4507 Uncharacterized conser 77.9 15 0.00032 37.7 8.9 87 138-225 620-706 (886)
351 PF07721 TPR_4: Tetratricopept 77.9 3.6 7.7E-05 22.3 2.8 14 168-181 9-22 (26)
352 PF13181 TPR_8: Tetratricopept 77.4 7.1 0.00015 22.5 4.4 27 584-610 3-29 (34)
353 PRK10941 hypothetical protein; 77.3 35 0.00077 32.0 10.9 74 164-238 185-258 (269)
354 PF00637 Clathrin: Region in C 76.6 0.75 1.6E-05 38.5 -0.2 54 237-290 13-66 (143)
355 PRK09687 putative lyase; Provi 75.8 74 0.0016 30.2 29.5 60 229-292 35-98 (280)
356 PF13174 TPR_6: Tetratricopept 75.0 4.3 9.3E-05 23.2 2.9 25 165-189 5-29 (33)
357 PF11848 DUF3368: Domain of un 74.1 12 0.00027 24.1 5.0 35 592-626 12-46 (48)
358 KOG0687 26S proteasome regulat 74.1 84 0.0018 30.0 15.8 98 336-435 104-209 (393)
359 TIGR03504 FimV_Cterm FimV C-te 73.7 7.5 0.00016 24.5 3.8 20 239-258 7-26 (44)
360 PF13929 mRNA_stabil: mRNA sta 72.4 87 0.0019 29.5 16.6 58 263-320 199-257 (292)
361 KOG2066 Vacuolar assembly/sort 72.0 1.5E+02 0.0033 32.1 31.6 99 135-243 366-467 (846)
362 KOG1464 COP9 signalosome, subu 71.6 85 0.0018 29.0 18.4 50 173-222 40-92 (440)
363 PF11663 Toxin_YhaV: Toxin wit 70.5 5 0.00011 32.3 3.0 33 593-627 106-138 (140)
364 COG0790 FOG: TPR repeat, SEL1 69.5 1.1E+02 0.0023 29.3 23.7 159 457-625 92-280 (292)
365 KOG4642 Chaperone-dependent E3 68.5 94 0.002 28.3 11.5 53 519-573 51-104 (284)
366 PF10579 Rapsyn_N: Rapsyn N-te 68.2 17 0.00036 26.3 4.9 17 586-602 47-63 (80)
367 PF13929 mRNA_stabil: mRNA sta 67.2 1.1E+02 0.0025 28.8 16.7 62 299-360 200-262 (292)
368 KOG4077 Cytochrome c oxidase, 67.2 38 0.00083 27.1 7.1 47 143-189 67-113 (149)
369 COG1747 Uncharacterized N-term 67.1 1.6E+02 0.0034 30.3 25.6 181 264-453 64-250 (711)
370 PF07163 Pex26: Pex26 protein; 66.4 78 0.0017 29.6 9.9 87 414-500 90-181 (309)
371 KOG1586 Protein required for f 66.4 1E+02 0.0022 28.0 18.0 22 274-295 162-183 (288)
372 smart00028 TPR Tetratricopepti 66.0 11 0.00023 20.6 3.4 27 197-223 3-29 (34)
373 PF11846 DUF3366: Domain of un 64.9 30 0.00066 30.6 7.4 33 578-610 140-172 (193)
374 KOG4507 Uncharacterized conser 64.8 62 0.0013 33.5 9.8 100 126-226 213-314 (886)
375 KOG2297 Predicted translation 64.8 1.3E+02 0.0028 28.5 16.7 19 548-566 322-340 (412)
376 KOG1464 COP9 signalosome, subu 64.3 1.2E+02 0.0026 28.0 23.3 59 411-469 149-218 (440)
377 PF10579 Rapsyn_N: Rapsyn N-te 64.2 20 0.00043 25.9 4.7 49 524-572 18-68 (80)
378 PF13762 MNE1: Mitochondrial s 63.3 88 0.0019 26.1 10.7 83 338-420 41-128 (145)
379 PF04097 Nic96: Nup93/Nic96; 62.1 2.3E+02 0.0051 30.6 22.4 64 124-189 111-181 (613)
380 PF08424 NRDE-2: NRDE-2, neces 61.2 1.7E+02 0.0036 28.6 17.6 29 339-367 157-185 (321)
381 PF14853 Fis1_TPR_C: Fis1 C-te 60.4 47 0.001 22.0 6.2 35 342-378 7-41 (53)
382 PF08311 Mad3_BUB1_I: Mad3/BUB 58.9 97 0.0021 25.1 8.8 43 213-255 81-123 (126)
383 PF14689 SPOB_a: Sensor_kinase 58.6 25 0.00054 24.2 4.4 26 198-223 26-51 (62)
384 PF11846 DUF3366: Domain of un 58.2 25 0.00055 31.1 5.7 34 156-189 140-173 (193)
385 PHA02875 ankyrin repeat protei 58.0 71 0.0015 32.4 9.7 18 202-219 72-89 (413)
386 PF14689 SPOB_a: Sensor_kinase 57.5 28 0.0006 24.0 4.5 27 233-259 25-51 (62)
387 KOG0890 Protein kinase of the 57.4 4.9E+02 0.011 32.8 29.6 150 165-325 1388-1542(2382)
388 PF13934 ELYS: Nuclear pore co 56.6 1.1E+02 0.0025 27.8 9.6 125 480-618 79-205 (226)
389 PF08424 NRDE-2: NRDE-2, neces 56.6 2E+02 0.0043 28.0 19.0 118 459-578 48-185 (321)
390 KOG2063 Vacuolar assembly/sort 56.3 3.3E+02 0.0073 30.5 17.7 26 163-188 507-532 (877)
391 PF12862 Apc5: Anaphase-promot 55.6 63 0.0014 24.5 6.7 24 201-224 47-70 (94)
392 KOG2908 26S proteasome regulat 55.4 1.2E+02 0.0025 29.3 9.3 65 519-583 82-156 (380)
393 PF14561 TPR_20: Tetratricopep 55.0 89 0.0019 23.5 9.4 53 194-246 21-73 (90)
394 PF12862 Apc5: Anaphase-promot 54.7 77 0.0017 24.0 7.1 53 558-610 9-69 (94)
395 COG5187 RPN7 26S proteasome re 54.6 1.9E+02 0.0041 27.2 13.7 70 229-298 113-187 (412)
396 KOG0128 RNA-binding protein SA 54.0 3.4E+02 0.0073 29.9 34.2 201 124-330 112-341 (881)
397 PF07163 Pex26: Pex26 protein; 53.8 2E+02 0.0042 27.1 13.2 60 164-223 87-146 (309)
398 cd00280 TRFH Telomeric Repeat 53.3 1.2E+02 0.0027 26.3 8.3 43 342-387 117-159 (200)
399 KOG0551 Hsp90 co-chaperone CNS 53.2 2.2E+02 0.0048 27.5 10.8 88 168-257 89-179 (390)
400 PF09670 Cas_Cas02710: CRISPR- 53.1 2.1E+02 0.0046 28.6 11.6 18 136-153 142-159 (379)
401 PF10366 Vps39_1: Vacuolar sor 53.0 1.1E+02 0.0024 24.0 8.9 27 409-435 41-67 (108)
402 PHA02875 ankyrin repeat protei 52.6 2.6E+02 0.0057 28.3 14.3 76 241-324 9-88 (413)
403 PRK11619 lytic murein transgly 52.5 3.4E+02 0.0074 29.5 41.8 81 160-247 99-179 (644)
404 PF09477 Type_III_YscG: Bacter 52.4 1.1E+02 0.0024 23.8 8.7 30 579-610 68-97 (116)
405 PF14853 Fis1_TPR_C: Fis1 C-te 52.4 33 0.00072 22.7 4.0 19 591-609 10-28 (53)
406 cd00280 TRFH Telomeric Repeat 52.0 99 0.0022 26.8 7.6 48 176-223 85-139 (200)
407 PF04190 DUF410: Protein of un 51.4 2.1E+02 0.0046 26.8 16.6 146 130-295 15-170 (260)
408 KOG0376 Serine-threonine phosp 51.0 32 0.00069 34.6 5.3 103 168-276 12-115 (476)
409 PF04190 DUF410: Protein of un 50.9 2.2E+02 0.0047 26.7 18.7 83 334-436 88-170 (260)
410 PF09986 DUF2225: Uncharacteri 50.7 1.9E+02 0.0042 26.1 11.0 25 587-611 170-194 (214)
411 COG2178 Predicted RNA-binding 50.4 1.7E+02 0.0037 25.7 8.8 17 278-294 133-149 (204)
412 KOG0128 RNA-binding protein SA 50.0 3.9E+02 0.0084 29.4 36.2 57 559-616 474-531 (881)
413 PF09670 Cas_Cas02710: CRISPR- 49.9 2.4E+02 0.0052 28.3 11.5 54 451-505 140-197 (379)
414 KOG0545 Aryl-hydrocarbon recep 49.6 2.1E+02 0.0046 26.3 10.4 112 114-226 167-295 (329)
415 KOG4642 Chaperone-dependent E3 49.5 2.1E+02 0.0046 26.2 10.9 64 404-468 40-104 (284)
416 COG2178 Predicted RNA-binding 48.6 1.8E+02 0.0039 25.6 8.7 18 593-610 132-149 (204)
417 PRK10941 hypothetical protein; 47.8 2.5E+02 0.0053 26.5 11.1 59 271-330 186-244 (269)
418 PF08311 Mad3_BUB1_I: Mad3/BUB 47.6 1.5E+02 0.0033 24.0 8.8 43 249-291 81-124 (126)
419 PF11848 DUF3368: Domain of un 47.5 72 0.0016 20.5 4.9 30 243-272 14-43 (48)
420 PF00244 14-3-3: 14-3-3 protei 47.2 1.9E+02 0.004 26.7 9.5 60 129-188 5-65 (236)
421 KOG4279 Serine/threonine prote 47.2 3.9E+02 0.0085 29.0 12.3 250 14-333 131-398 (1226)
422 KOG1114 Tripeptidyl peptidase 46.6 4.7E+02 0.01 29.4 13.6 122 243-385 1159-1281(1304)
423 PRK10564 maltose regulon perip 45.1 56 0.0012 30.9 5.7 29 234-262 260-288 (303)
424 KOG4521 Nuclear pore complex, 44.9 5.5E+02 0.012 29.7 13.7 157 130-289 925-1125(1480)
425 PF11663 Toxin_YhaV: Toxin wit 44.9 23 0.0005 28.7 2.8 21 561-581 109-129 (140)
426 cd08819 CARD_MDA5_2 Caspase ac 44.7 1.3E+02 0.0028 22.4 7.5 14 315-328 50-63 (88)
427 KOG0376 Serine-threonine phosp 43.6 65 0.0014 32.5 6.2 104 415-522 12-115 (476)
428 PF13762 MNE1: Mitochondrial s 43.5 1.9E+02 0.0042 24.1 11.0 50 581-630 78-128 (145)
429 PF10366 Vps39_1: Vacuolar sor 43.5 1.6E+02 0.0035 23.1 7.5 26 585-610 42-67 (108)
430 PRK13342 recombination factor 42.8 3.8E+02 0.0082 27.2 20.0 24 245-268 244-267 (413)
431 KOG1308 Hsp70-interacting prot 42.4 18 0.0004 34.5 2.2 88 172-262 126-213 (377)
432 COG5108 RPO41 Mitochondrial DN 42.1 1.5E+02 0.0034 31.3 8.6 75 517-594 33-115 (1117)
433 PF13006 Nterm_IS4: Insertion 42.0 1.6E+02 0.0034 22.6 6.9 83 83-174 6-88 (98)
434 PF03745 DUF309: Domain of unk 41.8 1.1E+02 0.0025 21.0 6.0 48 205-253 9-61 (62)
435 PRK10564 maltose regulon perip 40.7 56 0.0012 30.9 5.0 42 579-620 253-295 (303)
436 PF12793 SgrR_N: Sugar transpo 40.6 1.9E+02 0.004 23.1 7.3 72 217-290 5-94 (115)
437 PF11817 Foie-gras_1: Foie gra 40.5 1.6E+02 0.0034 27.3 8.2 61 233-293 180-245 (247)
438 COG0735 Fur Fe2+/Zn2+ uptake r 40.3 1.4E+02 0.003 25.0 6.9 30 588-617 26-55 (145)
439 PRK11619 lytic murein transgly 39.4 5.4E+02 0.012 28.1 39.7 399 117-547 91-511 (644)
440 COG0790 FOG: TPR repeat, SEL1 38.1 3.6E+02 0.0078 25.6 25.5 49 175-226 92-144 (292)
441 cd08819 CARD_MDA5_2 Caspase ac 37.9 1.7E+02 0.0037 21.8 7.0 14 280-293 50-63 (88)
442 PF09477 Type_III_YscG: Bacter 37.8 2E+02 0.0043 22.5 8.5 81 102-190 19-99 (116)
443 KOG1308 Hsp70-interacting prot 37.6 57 0.0012 31.4 4.5 92 207-302 126-218 (377)
444 PF11817 Foie-gras_1: Foie gra 37.4 1.7E+02 0.0036 27.2 7.8 62 267-328 179-245 (247)
445 KOG2168 Cullins [Cell cycle co 37.1 6.2E+02 0.014 28.1 26.5 36 588-625 794-829 (835)
446 COG5187 RPN7 26S proteasome re 36.8 3.7E+02 0.0081 25.4 14.4 98 336-435 115-220 (412)
447 PRK15180 Vi polysaccharide bio 36.4 4.8E+02 0.01 26.6 31.7 123 205-332 299-422 (831)
448 PF10255 Paf67: RNA polymerase 36.4 1.8E+02 0.0039 29.2 8.0 59 234-292 125-190 (404)
449 PRK09857 putative transposase; 35.4 2.5E+02 0.0054 26.9 8.7 64 552-616 211-274 (292)
450 PF10255 Paf67: RNA polymerase 35.0 4.2E+02 0.0092 26.7 10.3 61 268-328 124-191 (404)
451 COG0735 Fur Fe2+/Zn2+ uptake r 34.9 1.9E+02 0.004 24.2 6.9 44 307-350 26-69 (145)
452 PF02607 B12-binding_2: B12 bi 34.9 54 0.0012 23.7 3.4 38 559-596 13-50 (79)
453 KOG0292 Vesicle coat complex C 34.6 7E+02 0.015 27.9 26.3 98 488-585 1002-1122(1202)
454 PRK09857 putative transposase; 34.6 4.2E+02 0.0091 25.4 10.8 64 234-298 209-272 (292)
455 KOG4567 GTPase-activating prot 34.5 2.5E+02 0.0054 26.8 8.0 71 287-362 264-344 (370)
456 smart00386 HAT HAT (Half-A-TPR 34.5 84 0.0018 17.3 3.9 13 211-223 3-15 (33)
457 PF10475 DUF2450: Protein of u 34.4 4.2E+02 0.0091 25.3 10.8 54 164-223 102-155 (291)
458 PF15297 CKAP2_C: Cytoskeleton 34.2 1.4E+02 0.0031 28.9 6.6 47 125-171 140-186 (353)
459 KOG4567 GTPase-activating prot 34.2 2.3E+02 0.005 27.0 7.7 56 498-558 264-319 (370)
460 PF09986 DUF2225: Uncharacteri 34.0 3.6E+02 0.0077 24.4 11.4 49 529-577 142-195 (214)
461 PF14669 Asp_Glu_race_2: Putat 34.0 3.3E+02 0.0072 24.0 14.6 25 477-501 181-205 (233)
462 COG4941 Predicted RNA polymera 33.7 4.6E+02 0.0099 25.5 11.3 115 141-259 272-393 (415)
463 KOG3807 Predicted membrane pro 33.3 2.2E+02 0.0047 27.3 7.5 106 133-238 248-354 (556)
464 PF02184 HAT: HAT (Half-A-TPR) 33.1 1E+02 0.0022 17.9 3.4 22 141-164 3-24 (32)
465 PF00244 14-3-3: 14-3-3 protei 32.9 4E+02 0.0086 24.6 10.4 40 413-452 7-46 (236)
466 PF09454 Vps23_core: Vps23 cor 32.8 97 0.0021 21.6 4.0 47 511-558 7-53 (65)
467 COG5108 RPO41 Mitochondrial DN 32.8 2.9E+02 0.0063 29.4 8.9 75 130-207 33-115 (1117)
468 PF15297 CKAP2_C: Cytoskeleton 32.4 4.8E+02 0.01 25.5 9.7 44 584-627 142-185 (353)
469 PF04762 IKI3: IKI3 family; I 31.5 8.6E+02 0.019 28.0 17.6 134 456-608 792-927 (928)
470 PRK08691 DNA polymerase III su 31.4 6.8E+02 0.015 27.5 11.7 84 493-579 180-277 (709)
471 PF04910 Tcf25: Transcriptiona 30.7 5.5E+02 0.012 25.5 19.4 124 192-329 37-167 (360)
472 PF14561 TPR_20: Tetratricopep 29.7 2.4E+02 0.0053 21.1 9.6 33 439-471 19-51 (90)
473 PF02847 MA3: MA3 domain; Int 29.4 1.9E+02 0.0042 22.6 6.0 23 481-503 6-28 (113)
474 PF14669 Asp_Glu_race_2: Putat 29.2 4E+02 0.0087 23.5 14.8 25 271-295 137-161 (233)
475 PF04910 Tcf25: Transcriptiona 28.8 5.9E+02 0.013 25.3 22.1 56 202-258 110-166 (360)
476 KOG3364 Membrane protein invol 28.6 3.4E+02 0.0073 22.4 10.2 69 157-225 29-101 (149)
477 KOG1839 Uncharacterized protei 28.1 7.1E+02 0.015 29.2 11.5 155 203-359 940-1122(1236)
478 PRK13800 putative oxidoreducta 27.3 9.9E+02 0.022 27.4 30.3 127 405-541 754-881 (897)
479 PRK11639 zinc uptake transcrip 26.4 2.9E+02 0.0063 23.8 6.9 45 166-210 31-75 (169)
480 PHA03100 ankyrin repeat protei 26.1 6.6E+02 0.014 26.0 11.0 9 272-280 144-152 (480)
481 PRK07003 DNA polymerase III su 25.8 9.7E+02 0.021 26.8 11.8 92 529-623 181-286 (830)
482 KOG3364 Membrane protein invol 25.8 3.8E+02 0.0083 22.1 11.8 67 299-365 30-100 (149)
483 PRK13342 recombination factor 25.7 7.2E+02 0.016 25.3 19.7 14 314-327 187-200 (413)
484 cd07153 Fur_like Ferric uptake 25.7 1.7E+02 0.0037 23.0 5.1 34 177-210 17-50 (116)
485 KOG1839 Uncharacterized protei 25.3 8.7E+02 0.019 28.6 11.6 155 417-571 942-1123(1236)
486 KOG0686 COP9 signalosome, subu 25.3 7.1E+02 0.015 25.0 15.0 25 233-257 152-176 (466)
487 PF02847 MA3: MA3 domain; Int 25.2 3.3E+02 0.0072 21.2 6.8 20 272-291 8-27 (113)
488 KOG2659 LisH motif-containing 25.1 5.3E+02 0.011 23.5 10.9 98 369-469 24-130 (228)
489 PRK11639 zinc uptake transcrip 24.9 3.4E+02 0.0073 23.4 7.0 42 309-350 33-74 (169)
490 COG4976 Predicted methyltransf 24.6 1.8E+02 0.0039 26.4 5.1 53 172-225 7-59 (287)
491 PF12926 MOZART2: Mitotic-spin 24.5 3E+02 0.0066 20.5 8.5 43 252-294 29-71 (88)
492 PF06855 DUF1250: Protein of u 24.3 1E+02 0.0022 19.7 2.7 41 112-152 2-42 (46)
493 PF01475 FUR: Ferric uptake re 23.6 1.4E+02 0.0031 23.7 4.3 45 130-174 12-56 (120)
494 PF09454 Vps23_core: Vps23 cor 23.6 1.8E+02 0.0039 20.3 4.1 29 197-225 10-38 (65)
495 PRK14958 DNA polymerase III su 23.6 8.8E+02 0.019 25.5 12.3 85 494-581 181-279 (509)
496 KOG1114 Tripeptidyl peptidase 23.5 1.1E+03 0.024 26.7 14.8 62 511-573 1230-1292(1304)
497 PF09868 DUF2095: Uncharacteri 23.4 3.1E+02 0.0066 21.7 5.5 44 236-280 66-109 (128)
498 PRK09462 fur ferric uptake reg 23.3 4.2E+02 0.0092 22.1 7.2 60 397-457 7-67 (148)
499 PRK09462 fur ferric uptake reg 23.3 4E+02 0.0087 22.2 7.1 32 319-350 35-66 (148)
500 KOG2034 Vacuolar sorting prote 22.9 1.1E+03 0.024 26.5 29.0 49 274-328 366-416 (911)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.1e-70 Score=589.27 Aligned_cols=502 Identities=21% Similarity=0.315 Sum_probs=447.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 006624 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTC-VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
++...|..++..|++.|++++|+++|++|.+.++ +++..+++.++..|.+.|.+++|..+|+.|.. |+..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 4677888888888899999999999999988875 46677788888899999999999999988874 789999999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006624 202 ILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE 281 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 281 (638)
+.+|++.|++++|.++|++|.+.|.. ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~-pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLK-ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999888765 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006624 282 VEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLK--EGCKPDIVLINNLINVLGRAGRLEDALKLF 359 (638)
Q Consensus 282 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 359 (638)
+++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999976 578899999999999999999999999999
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006624 360 NKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFP 439 (638)
Q Consensus 360 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 439 (638)
+.|.+.|+.|+..+|+.+|.+|++.|+.+++ ..+|+.|...|+.||..+|+.++++|++.|++++|.+++++|.+.|+.
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deA-l~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA-LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999988777 888899999999999999999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 006624 440 PCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALM 519 (638)
Q Consensus 440 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 519 (638)
|+..+|+.+|.+|++.|++++|.++|++|.+.+..||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999988889999999999999999999999999999999989999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHhhhC
Q 006624 520 SGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAK----S-------------------GGPKRAMEIFTKMQHS 576 (638)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~ 576 (638)
.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ + +..++|..+|++|++.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999988865432 1 1246788999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcc
Q 006624 577 EIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKV 630 (638)
Q Consensus 577 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 630 (638)
|+.||..||+.++.++++.+..+.+..+++.|...+..|+..+|+++++++++.
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~ 895 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY 895 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC
Confidence 999999999999988888888999999998888888888899999999988643
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.2e-70 Score=586.18 Aligned_cols=509 Identities=17% Similarity=0.249 Sum_probs=484.4
Q ss_pred ccchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 006624 102 DVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALS 181 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 181 (638)
.+++..|+++|++..+..-.+++..+++.++..|.+.|.+++|+.+++.|.. |+..+|+.++.+|++.|++++|.+
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~ 458 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALR 458 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHH
Confidence 3778999999998876665678889999999999999999999999998854 899999999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006624 182 IFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
+|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|.. ||..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus 459 lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~-PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G 537 (1060)
T PLN03218 459 VLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE-ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN 537 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999998865 999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006624 262 LQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKG--KGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLI 339 (638)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 339 (638)
+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|
T Consensus 538 v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ty 617 (1060)
T PLN03218 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY 617 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHH
Confidence 999999999999999999999999999999986 678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006624 340 NNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK 419 (638)
Q Consensus 340 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 419 (638)
+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|+..++ ..+++.|.+.|+.||..+|+.++.+|++
T Consensus 618 nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA-~~l~~eM~k~G~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA-FEILQDARKQGIKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998888 9999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 006624 420 TNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDL 499 (638)
Q Consensus 420 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 499 (638)
.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|..||..+|+.++.+|++.|++++|.++
T Consensus 697 ~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l 776 (1060)
T PLN03218 697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHH----c-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006624 500 FNEMKKLRCKPDVYTYNALMSGMVR----A-------------------GMIDDAYSLLRRMEEDGCVPDINSHNIILNG 556 (638)
Q Consensus 500 ~~~m~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 556 (638)
|++|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|++.|+.||..||+.++.+
T Consensus 777 ~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~c 856 (1060)
T PLN03218 777 LSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGC 856 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 9999999999999999999866432 1 1246799999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 006624 557 LAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQI 618 (638)
Q Consensus 557 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 618 (638)
+++.+..+.+..+++.|...+..|+..+|+++++++++. .++|..++++|...|+.|+..
T Consensus 857 l~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 857 LQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 999999999999999998888899999999999998543 468999999999999999985
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.9e-69 Score=590.03 Aligned_cols=509 Identities=19% Similarity=0.274 Sum_probs=408.9
Q ss_pred cchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 006624 103 VEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSI 182 (638)
Q Consensus 103 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 182 (638)
+.++.|+.+|+... ..|+.||..+|+.+++++++.+++..+.+++..|.+.|..|+..+++.++.+|++.|++++|.++
T Consensus 166 g~~~~A~~~f~~M~-~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~l 244 (857)
T PLN03077 166 GYFDEALCLYHRML-WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV 244 (857)
T ss_pred CCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHH
Confidence 33445555554332 23455555555555555555555555555555555555555566667777777777777777777
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCC
Q 006624 183 FYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGL 262 (638)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 262 (638)
|++|.+ ||..+||++|.+|++.|++++|+++|++|...|.. ||..||+.++.+|++.|+.+.|.+++..|.+.|+
T Consensus 245 f~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~-Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 319 (857)
T PLN03077 245 FDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVD-PDLMTITSVISACELLGDERLGREMHGYVVKTGF 319 (857)
T ss_pred HhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Confidence 777764 46777777777777777777777777777776654 7777777777777777777777777777777777
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006624 263 QPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNL 342 (638)
Q Consensus 263 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 342 (638)
.||..+|+.|+.+|++.|++++|.++|++|.. ||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.+
T Consensus 320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~l 395 (857)
T PLN03077 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395 (857)
T ss_pred ccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHH
Confidence 77777788888888888888888888777753 47777888888888888888888888888777778888888888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006624 343 INVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNR 422 (638)
Q Consensus 343 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 422 (638)
+.+|++.|+++.|.++++.+.+.|+.|+..+|+.++..|++.|+.+++ ..+|+.|.+ +|..+|+.++.+|++.|+
T Consensus 396 l~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A-~~vf~~m~~----~d~vs~~~mi~~~~~~g~ 470 (857)
T PLN03077 396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA-LEVFHNIPE----KDVISWTSIIAGLRLNNR 470 (857)
T ss_pred HHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHH-HHHHHhCCC----CCeeeHHHHHHHHHHCCC
Confidence 888888888888888888887778888888888888888888777766 777777753 467778888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 423 VEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNE 502 (638)
Q Consensus 423 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 502 (638)
.++|+.+|++|.. +++||..+|+.++.+|++.|+++.+.+++..+.+.|..++..+++.|+++|+++|++++|.++|+.
T Consensus 471 ~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~ 549 (857)
T PLN03077 471 CFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS 549 (857)
T ss_pred HHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHh
Confidence 8888888888875 478888888888888888888888888888888888889999999999999999999999999988
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh-hCCCCCC
Q 006624 503 MKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQ-HSEIKPD 581 (638)
Q Consensus 503 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~p~ 581 (638)
+ .||..+||+++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+
T Consensus 550 ~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 550 H-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred c-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 7 489999999999999999999999999999999999999999999999999999999999999999 5799999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCccC
Q 006624 582 AVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDEDRN 635 (638)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 635 (638)
..+|++++++|++.|++++|.+++++| ++.||..+|++|+.+|...|+.+.
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~ 675 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVEL 675 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHH
Confidence 999999999999999999999999999 589999999999999998887764
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.9e-69 Score=590.46 Aligned_cols=510 Identities=18% Similarity=0.231 Sum_probs=454.5
Q ss_pred ccchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 006624 102 DVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALS 181 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 181 (638)
.++...|.++|+... ++|..+||.++.+|++.|++++|+++|++|...|+.||..+|+.+++++++.++++.+.+
T Consensus 134 ~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~ 208 (857)
T PLN03077 134 FGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE 208 (857)
T ss_pred CCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHH
Confidence 345667777777442 357788888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006624 182 IFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
++..+.+.|+.|+..+||.++.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|+.++|+++|++|.+.|
T Consensus 209 ~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred HHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 888888888888888889999999999999999999988854 788889999999999999999999999998888
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006624 262 LQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINN 341 (638)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 341 (638)
+.||..+|+.++.++++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~ 359 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTA 359 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHH
Confidence 8999999999999999999999999999999888888899999999999999999999999998885 468888999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006624 342 LINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTN 421 (638)
Q Consensus 342 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 421 (638)
++.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|+.+.+ .++++.+.+.|+.|+..+|+.++++|++.|
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a-~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG-VKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHH-HHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 9999999999999999999998888889999999999988888888777 888888888888889999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFN 501 (638)
Q Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 501 (638)
++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|.++|++|.. +..||..+|+.++.+|++.|+++.+.+++.
T Consensus 439 ~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~ 513 (857)
T PLN03077 439 CIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHA 513 (857)
T ss_pred CHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHH
Confidence 99999999988863 5677899999999999999999999999876 488899999999999999999999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 006624 502 EMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD 581 (638)
Q Consensus 502 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 581 (638)
.+.+.|+.+|..++|+|+.+|++.|++++|.++|+++ .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||
T Consensus 514 ~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd 588 (857)
T PLN03077 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588 (857)
T ss_pred HHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Confidence 9998899999999999999999999999999999887 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHhhHHHHHHHHhccCCccCC
Q 006624 582 AVSYNTILGCLSRAGMFEEAARLMKDMN-AKGFEYDQITYSSILEAVGKVDEDRNP 636 (638)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~a 636 (638)
..||+.++.+|.+.|++++|.++|++|. +.|+.|+..+|++++++|++.|++++|
T Consensus 589 ~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999999999999999999 689999999999999999999998876
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-63 Score=535.46 Aligned_cols=474 Identities=19% Similarity=0.278 Sum_probs=449.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 006624 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRST-CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNS 200 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 200 (638)
..+..+|+.++..|.+.|++++|.++|+.|...+ ..|+..+|+.++.++.+.++++.|.+++..|.+.|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3456789999999999999999999999998764 678999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006624 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 99999999999999999999964 8999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006624 281 EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFN 360 (638)
Q Consensus 281 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 360 (638)
..+.+.+++..+.+.|+.||..+|+.|+++|++.|++++|.++|++|. .+|..+||.++.+|++.|+.++|.++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999995 4599999999999999999999999999
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006624 361 KMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPP 440 (638)
Q Consensus 361 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 440 (638)
+|.+.|+.||..||+.++.++++.+...++ .+++..|.+.|+.||..+|+.++++|++.|++++|.++|++|. .+
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a-~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~ 389 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHA-KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RK 389 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHH-HHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CC
Confidence 999999999999999999999999998888 8899999999999999999999999999999999999999986 46
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHhhHHHHH
Q 006624 441 CPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKK-LRCKPDVYTYNALM 519 (638)
Q Consensus 441 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~ 519 (638)
|..+|+.+|.+|++.|+.++|.++|++|.+.|..||..+|+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 88999999999999999999999999999999999999999999999999999999999999976 59999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCCH
Q 006624 520 SGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD-AVSYNTILGCLSRAGMF 598 (638)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~ 598 (638)
++|++.|++++|.+++++| ++.|+..+|+.|+.+|+..|+++.|..+++++.+ +.|+ ..+|..++++|++.|++
T Consensus 470 ~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~ 544 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQ 544 (697)
T ss_pred HHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCH
Confidence 9999999999999998875 5789999999999999999999999999999974 4564 67999999999999999
Q ss_pred HHHHHHHHHHHhCCCC
Q 006624 599 EEAARLMKDMNAKGFE 614 (638)
Q Consensus 599 ~~A~~~~~~m~~~~~~ 614 (638)
++|.+++++|.+.|+.
T Consensus 545 ~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 545 AEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHHHHHHcCCc
Confidence 9999999999999875
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.6e-63 Score=530.81 Aligned_cols=500 Identities=18% Similarity=0.259 Sum_probs=460.5
Q ss_pred ccccchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 006624 100 NIDVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKA 179 (638)
Q Consensus 100 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 179 (638)
...+++..|+++|.|+....++.|+..+|+.++.++.+.++++.+.+++..|.+.|..|+..+|+.++.+|++.|++++|
T Consensus 98 ~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A 177 (697)
T PLN03081 98 VACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDA 177 (697)
T ss_pred HcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHH
Confidence 34577899999999998777788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006624 180 LSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
.++|++|.+ ||..+||.++.+|++.|++++|+++|++|.+.+.. ||..+|+.++.++++.|+.+.+.+++..+.+
T Consensus 178 ~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~-p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 252 (697)
T PLN03081 178 RRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSD-AEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252 (697)
T ss_pred HHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CChhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999999975 69999999999999999999999999999998876 9999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006624 260 NGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLI 339 (638)
Q Consensus 260 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 339 (638)
.|+.||..+|+.|+++|++.|++++|.++|++|.. +|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 253 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~ 328 (697)
T PLN03081 253 TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328 (697)
T ss_pred hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999965 59999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006624 340 NNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK 419 (638)
Q Consensus 340 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 419 (638)
+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|+.+++ ..+|+.|. .||..+|+.||.+|++
T Consensus 329 ~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A-~~vf~~m~----~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA-RNVFDRMP----RKNLISWNALIAGYGN 403 (697)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHH-HHHHHhCC----CCCeeeHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888 89999986 4789999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 006624 420 TNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKE-YCGCSSARVYAVMIKHFGKCGRLSDAVD 498 (638)
Q Consensus 420 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~ 498 (638)
.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .+..|+..+|+.++++|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999986 6899999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 006624 499 LFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVP-DINSHNIILNGLAKSGGPKRAMEIFTKMQHSE 577 (638)
Q Consensus 499 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 577 (638)
++++| ++.|+..+|++|+.+|...|+++.|..+++++.+. .| +..+|..|++.|++.|++++|.++++.|.+.|
T Consensus 484 ~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 484 MIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99876 46899999999999999999999999999999764 45 47799999999999999999999999999998
Q ss_pred CCCCH-HHHHHHH---HHHH--------hcCCHHHHHHHHHHHHhCCCCCCHh
Q 006624 578 IKPDA-VSYNTIL---GCLS--------RAGMFEEAARLMKDMNAKGFEYDQI 618 (638)
Q Consensus 578 ~~p~~-~~~~~l~---~~~~--------~~g~~~~A~~~~~~m~~~~~~p~~~ 618 (638)
++..+ .+|..+- +.+. ...-++...++.++|.+.|+.||..
T Consensus 559 ~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 559 LSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred CccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 76432 2332110 0010 0112455667888999999999853
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.4e-31 Score=302.48 Aligned_cols=517 Identities=13% Similarity=0.050 Sum_probs=419.1
Q ss_pred ccccchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 006624 100 NIDVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKA 179 (638)
Q Consensus 100 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 179 (638)
...++.+.|+.+|..+.... +.+...|..+..++...|++++|...++.+.+.. +........++..+.+.|++++|
T Consensus 374 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 450 (899)
T TIGR02917 374 LALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKA 450 (899)
T ss_pred HHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHH
Confidence 34566777777777665443 3456677777777778888888888887776643 23344556677778888888888
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006624 180 LSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
..+++++.... +.+..++..+...+...|++++|.+.|+++.+..+ .+...+..+...+...|++++|.+.++++.+
T Consensus 451 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 527 (899)
T TIGR02917 451 LAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP--DFFPAAANLARIDIQEGNPDDAIQRFEKVLT 527 (899)
T ss_pred HHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888887653 34677888888888899999999999998888665 5667778888888888999999999998887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006624 260 NGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLI 339 (638)
Q Consensus 260 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 339 (638)
.+ +.+..++..+...+.+.|+.++|...++++...++. +...+..++..+.+.|++++|..+++.+.+.. +.+..+|
T Consensus 528 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 604 (899)
T TIGR02917 528 ID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAW 604 (899)
T ss_pred hC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHH
Confidence 64 446778888888898999999999999888877543 66778888888999999999999999988764 3477888
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006624 340 NNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK 419 (638)
Q Consensus 340 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 419 (638)
..+..+|.+.|++++|...|+.+.+.. +.+...+..+...+...++..++ ...++.+.... +.+..++..++..+..
T Consensus 605 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 605 LMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKA-ITSLKRALELK-PDNTEAQIGLAQLLLA 681 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 899999999999999999999987754 23556677777778888887777 67777777653 4457888889999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 006624 420 TNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDL 499 (638)
Q Consensus 420 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 499 (638)
.|++++|..+++.+.+.. +.+...+..++..+...|++++|.+.++.+.... |+..++..++.++.+.|++++|...
T Consensus 682 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 682 AKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred cCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999998876 6778888889999999999999999999998864 3446777888999999999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 006624 500 FNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIK 579 (638)
Q Consensus 500 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 579 (638)
++++.+.. +.+...+..+...|...|++++|.+.|+++.+.. +++..+++.++..+...|+ .+|+.+++++.+.. +
T Consensus 759 ~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~ 834 (899)
T TIGR02917 759 LEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-P 834 (899)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-C
Confidence 99988764 5567888889999999999999999999999874 4578889999999999999 88999999998743 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCccCC
Q 006624 580 PDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDEDRNP 636 (638)
Q Consensus 580 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 636 (638)
-+..++..+..++.+.|++++|.++++++.+.+ +.+..++..+..++.+.|+.++|
T Consensus 835 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A 890 (899)
T TIGR02917 835 NIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEA 890 (899)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHH
Confidence 256678889999999999999999999999875 34888999999999999998876
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.4e-31 Score=299.23 Aligned_cols=512 Identities=13% Similarity=0.079 Sum_probs=303.6
Q ss_pred ccchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 006624 102 DVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALS 181 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 181 (638)
.++.+.|...|..+.... +.+...+..+..++.+.|++++|+..++.+.... +.+...+..+...+.+.|++++|..
T Consensus 308 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 384 (899)
T TIGR02917 308 LGNLEQAYQYLNQILKYA--PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAE 384 (899)
T ss_pred cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 445566666666554433 3455566666777777777777777777766543 4456667777777777777777777
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006624 182 IFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
.|+++.+..+. +...+..+...+...|++++|++.|+.+....+ ........++..+.+.|++++|.++++.+.+.
T Consensus 385 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 460 (899)
T TIGR02917 385 YLAKATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLDP--ELGRADLLLILSYLRSGQFDKALAAAKKLEKK- 460 (899)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC--cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-
Confidence 77777665332 555666666667777777777777777666543 23334445556666666666666666666654
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006624 262 LQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINN 341 (638)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 341 (638)
.+.+..++..+...+...|++++|.+.|+++.+..+. +...+..+...+...|++++|...|+++.+..+. +..++..
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~ 538 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILA 538 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHH
Confidence 2345566666666777777777777777666655433 4555556666666666666666666666665332 5556666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006624 342 LINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTN 421 (638)
Q Consensus 342 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 421 (638)
+...+.+.|+.++|..+++++...+ ..+...+..+...+...|+..++ ..+++.+.... +.+...|..+..++.+.|
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKA-LAILNEAADAA-PDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHH-HHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 6666666666666666666665533 12344455555555556655555 55555555432 345556666666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFN 501 (638)
Q Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 501 (638)
++++|...++++.+.. +.+...+..++..+.+.|++++|...++++.+. .+.+...+..++..+...|++++|..+++
T Consensus 616 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666666543 445555666666666666666666666666554 33445555666666666666666666666
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 006624 502 EMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD 581 (638)
Q Consensus 502 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 581 (638)
.+.+.+ +++...+..+...+...|++++|.+.|+++.+.+ |+..++..++..+.+.|++++|.+.++++.+.. +.+
T Consensus 694 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~ 769 (899)
T TIGR02917 694 SLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PND 769 (899)
T ss_pred HHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 665543 3344455555555566666666666666655542 333445555555555666666666555555432 224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC
Q 006624 582 AVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDE 632 (638)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 632 (638)
...+..+...|.+.|++++|.++|+++.+.. +++..++..+...+.+.|+
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc
Confidence 4555555555555666666666666555432 3344455555555554444
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=3.1e-23 Score=234.42 Aligned_cols=549 Identities=10% Similarity=0.042 Sum_probs=378.1
Q ss_pred CCCCCcHHHHHHhhc-ccC-ChHHHHHHh---ccccchHHHHHHHHHhhcCCCCCCCHHHH----------------HHH
Q 006624 73 FKWGPDAEKALEVLK-MRV-DHRLVHQVL---NIDVEINVKIQFFKWAGRRRNFEHNSTTY----------------MAL 131 (638)
Q Consensus 73 ~~~~~~~~~~l~~~~-~~~-~~~~~~~vl---~~~~~~~~a~~~f~~~~~~~~~~~~~~~~----------------~~l 131 (638)
.+-...+.+.|..+. +.+ +|....... -..++.+.|.+.++.+.+.. +.+...+ ...
T Consensus 41 ~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (1157)
T PRK11447 41 THREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQ 118 (1157)
T ss_pred hCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHH
Confidence 333344556666443 222 233333322 24678899998888665544 3343332 344
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 006624 132 IRCLDETRMIGVMWKSIQDMVRSTCVMGPSV-LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY 210 (638)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 210 (638)
.+.+.+.|++++|.+.|+.+.... +++... ...........|+.++|++.|+++.+..+. +...+..+...+...|+
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCC
Confidence 567889999999999999998753 444322 111222233469999999999999988544 77888899999999999
Q ss_pred HhHHHHHHHHHHhCCCCC-----------------CCH-HHHH----------------------------------HHH
Q 006624 211 YEKIHELYNEMCNEGNCF-----------------PDT-VTYS----------------------------------ALI 238 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~-----------------~~~-~~~~----------------------------------~l~ 238 (638)
+++|++.++++....... ++. ..+. ...
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G 276 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQG 276 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 999999999997643210 010 0111 112
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHH------------H
Q 006624 239 SAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT-VYTY------------T 305 (638)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~------------~ 305 (638)
..+...|++++|+..|++..+.. +.+..++..+...+.+.|++++|+..|++..+..+... ...+ .
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 34566799999999999998863 34788899999999999999999999999987754322 1112 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhc
Q 006624 306 ELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPN-VVTYNTVIKSLFES 384 (638)
Q Consensus 306 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~ 384 (638)
.....+.+.|++++|...|+++++..+. +...+..+...+...|++++|.+.|+++.+.. |+ ...+..+...+ ..
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~-~~ 431 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLY-RQ 431 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH-Hh
Confidence 2245677899999999999999987543 66778888999999999999999999998754 44 34444444444 44
Q ss_pred CChHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC
Q 006624 385 KAPASEASAWFEKMKANGVL--------PSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAK 456 (638)
Q Consensus 385 ~~~~~a~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 456 (638)
++..++ ..+++.+...... -....+..+...+...|++++|++.+++..+.. |.++..+..+...|.+.|
T Consensus 432 ~~~~~A-~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 432 QSPEKA-LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred cCHHHH-HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 455444 5555543321100 011234556677888899999999999988875 667778888888899999
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------------------------------
Q 006624 457 RYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL------------------------------ 506 (638)
Q Consensus 457 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------------ 506 (638)
++++|...++++.+.. +.+...+..+...+...++.++|+..++.+...
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999999999887742 233333333333333444444444443332110
Q ss_pred ---------CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 006624 507 ---------RCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSE 577 (638)
Q Consensus 507 ---------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 577 (638)
..+++...+..+...+.+.|++++|++.|++.++.. +.+...+..++..+...|++++|.+.++.+.+.
T Consensus 589 ~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~- 666 (1157)
T PRK11447 589 EAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT- 666 (1157)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence 123445566778888999999999999999999863 336888899999999999999999999988754
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CC---CHhhHHHHHHHHhccCCccCC
Q 006624 578 IKP-DAVSYNTILGCLSRAGMFEEAARLMKDMNAKGF--EY---DQITYSSILEAVGKVDEDRNP 636 (638)
Q Consensus 578 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~p---~~~~~~~l~~~~~~~g~~~~a 636 (638)
.| +..++..+..++...|++++|.++++++....- .| +...+..+...+...|+.++|
T Consensus 667 -~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A 730 (1157)
T PRK11447 667 -ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQA 730 (1157)
T ss_pred -CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 33 456677788899999999999999999886421 22 224566666777777776654
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=8.1e-23 Score=231.08 Aligned_cols=548 Identities=13% Similarity=0.082 Sum_probs=362.2
Q ss_pred cccccccCCChhhHHHHHHHHHhcCCCCCcHHHHHHhhccc-CChHH------------------H--HHHhccccchHH
Q 006624 49 SKKFARKDTSARKLDERFIRILKIFKWGPDAEKALEVLKMR-VDHRL------------------V--HQVLNIDVEINV 107 (638)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~------------------~--~~vl~~~~~~~~ 107 (638)
+.+++..+|....+.....++....+-...+.+.++.+... ++... + ..++...++.+.
T Consensus 51 l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~e 130 (1157)
T PRK11447 51 LYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEE 130 (1157)
T ss_pred HHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHH
Confidence 55666666655555554445444444444444444433211 11111 1 113444678899
Q ss_pred HHHHHHHhhcCCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 006624 108 KIQFFKWAGRRRNFEHNST-TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQI 186 (638)
Q Consensus 108 a~~~f~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 186 (638)
|++.|+.+.... +++.. ....+.......|++++|++.++++.+.. +.++..+..+...+...|+.++|+..++++
T Consensus 131 A~~~~~~~l~~~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~ 207 (1157)
T PRK11447 131 ALASYDKLFNGA--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQM 207 (1157)
T ss_pred HHHHHHHHccCC--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999998776443 33322 11112222335689999999999998864 557778888999999999999999999887
Q ss_pred hhCCC------------------C--------------CCHHH---------------------HHHHHHHHHhcCCHhH
Q 006624 187 KSRKC------------------K--------------PTANT---------------------YNSMILMLMQEGYYEK 213 (638)
Q Consensus 187 ~~~~~------------------~--------------~~~~~---------------------~~~l~~~~~~~g~~~~ 213 (638)
..... . |+... .......+...|++++
T Consensus 208 ~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~ 287 (1157)
T PRK11447 208 AKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGK 287 (1157)
T ss_pred hhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHH
Confidence 54311 0 00000 0122455677899999
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHH------------HHHHHHHHhcC
Q 006624 214 IHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP-TAKIY------------TTLVSIYFKLG 280 (638)
Q Consensus 214 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~------------~~li~~~~~~g 280 (638)
|+..|++.++..+ .+...+..+...+.+.|++++|++.|++..+..... +...+ ......+.+.|
T Consensus 288 A~~~l~~aL~~~P--~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g 365 (1157)
T PRK11447 288 AIPELQQAVRANP--KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKAN 365 (1157)
T ss_pred HHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCC
Confidence 9999999998775 578889999999999999999999999998764211 11112 22345677899
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006624 281 EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFN 360 (638)
Q Consensus 281 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 360 (638)
++++|++.|+++.+..+. +...+..+...+...|++++|++.|+++++.... +...+..+...|. .++.++|..+++
T Consensus 366 ~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~ 442 (1157)
T PRK11447 366 NLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIA 442 (1157)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHH
Confidence 999999999999988654 6778888899999999999999999999986433 4455555555553 334566655555
Q ss_pred HHHHCCCC--------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 361 KMEALQCK--------PNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEE 432 (638)
Q Consensus 361 ~~~~~~~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 432 (638)
.+...... .....+..+...+...++..++ ...+++..+.. +-+...+..+...|.+.|++++|...+++
T Consensus 443 ~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA-~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~ 520 (1157)
T PRK11447 443 SLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQA-AELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRR 520 (1157)
T ss_pred hCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHH-HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 43221100 0011222333344445555444 44445544432 12344455555566666666666666666
Q ss_pred HHhCCCCCCHhhHHHH--------------------------------------------HHHHHccCCHHHHHHHHHHH
Q 006624 433 MEEKGFPPCPAAYCSL--------------------------------------------INGYGKAKRYEAANELFLEL 468 (638)
Q Consensus 433 ~~~~~~~~~~~~~~~l--------------------------------------------i~~~~~~g~~~~A~~~~~~~ 468 (638)
+.+.. +.++..+..+ ...+...|+.++|.++++
T Consensus 521 al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-- 597 (1157)
T PRK11447 521 LAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-- 597 (1157)
T ss_pred HHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH--
Confidence 55432 3333333332 334455555666655554
Q ss_pred HHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 006624 469 KEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDIN 548 (638)
Q Consensus 469 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 548 (638)
..+.+...+..+...+.+.|++++|+..|++..+.. +.+...+..++..+...|++++|++.++.+.+.. +.+..
T Consensus 598 ---~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~ 672 (1157)
T PRK11447 598 ---QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLN 672 (1157)
T ss_pred ---hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChH
Confidence 134566677888999999999999999999999864 4457888999999999999999999999888752 23566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCC
Q 006624 549 SHNIILNGLAKSGGPKRAMEIFTKMQHSEI--KP---DAVSYNTILGCLSRAGMFEEAARLMKDMNA-KGFE 614 (638)
Q Consensus 549 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~ 614 (638)
.+..+..++...|++++|.++++++..... .| +...+..+.+.+...|++++|.+.|++... .|+.
T Consensus 673 ~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 673 TQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 777888999999999999999999986421 22 235666778899999999999999999864 3443
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=1.8e-23 Score=199.67 Aligned_cols=429 Identities=16% Similarity=0.128 Sum_probs=252.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 006624 128 YMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ 207 (638)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (638)
-..+..-+.+.|++.+|.+.-......+ +.+....-.+-..+.+..+++.....-....+.. ..-.++|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4455666667777777777655444432 2222333333444555555555544433333332 2256677777777777
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHH
Q 006624 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYT-TLVSIYFKLGEVEKAL 286 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~A~ 286 (638)
.|++++|+.+|+.+++..+ .....|..+..++...|+.+.|.+.|.+.++. .|+..... .+...+-..|++++|.
T Consensus 129 rg~~~~al~~y~~aiel~p--~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKP--KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred hchHHHHHHHHHHHHhcCc--hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 7778888888777777654 45667777777777777777777777777764 35544433 3444444567777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 006624 287 GLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 287 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 366 (638)
..|.+.++..+. -...|+.|...+-.+|++..|++.|++.++..+. -...|-.|.+.|...+.++.|...|.+....
T Consensus 205 ~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l- 281 (966)
T KOG4626|consen 205 ACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNL- 281 (966)
T ss_pred HHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhc-
Confidence 777777665432 3556777777777777777888777777765332 3456667777777777777777777665442
Q ss_pred CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 006624 367 CKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYC 446 (638)
Q Consensus 367 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 446 (638)
.|+. ...+..+...|...|..+.|+..|++.++.. |.-+.+|+
T Consensus 282 -rpn~-----------------------------------A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~ 324 (966)
T KOG4626|consen 282 -RPNH-----------------------------------AVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYN 324 (966)
T ss_pred -CCcc-----------------------------------hhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHh
Confidence 2222 1223333444555555666666666555543 44455566
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHc
Q 006624 447 SLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPD-VYTYNALMSGMVRA 525 (638)
Q Consensus 447 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~ 525 (638)
.+..++-..|++.+|.+.+.+.... .+......+.|...|...|.+++|.++|....+. .|. ....+.|...|-++
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~l-~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqq 401 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKALRL-CPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQ 401 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhc
Confidence 6666666566666666666655554 2333445555556666666666666666555542 233 33455555555666
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 006624 526 GMIDDAYSLLRRMEEDGCVPD-INSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD-AVSYNTILGCLSRAGMFEEAAR 603 (638)
Q Consensus 526 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 603 (638)
|++++|+..|++.+. +.|+ ...|+.+...|-..|+.+.|.+.+.+.+. +.|. ...++.|...|..+|+..+|+.
T Consensus 402 gnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~ 477 (966)
T KOG4626|consen 402 GNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQ 477 (966)
T ss_pred ccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHH
Confidence 666666666666555 3444 44555566666666666666666665553 2333 3345555566666666666666
Q ss_pred HHHHHH
Q 006624 604 LMKDMN 609 (638)
Q Consensus 604 ~~~~m~ 609 (638)
-+++.+
T Consensus 478 sY~~aL 483 (966)
T KOG4626|consen 478 SYRTAL 483 (966)
T ss_pred HHHHHH
Confidence 666555
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=8.6e-22 Score=188.38 Aligned_cols=435 Identities=20% Similarity=0.210 Sum_probs=345.4
Q ss_pred cchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 006624 103 VEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSI 182 (638)
Q Consensus 103 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 182 (638)
++...|.+--..+.++. +.+....-.+-.++.+..+.+....--....+. .+-...+|..+.+.+-..|++++|+..
T Consensus 62 gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~~~al~~ 138 (966)
T KOG4626|consen 62 GDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQLQDALAL 138 (966)
T ss_pred cCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchHHHHHHH
Confidence 45555655555444333 122223333445566666666555544444443 244567899999999999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006624 183 FYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVT-YSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
|+.+.+..++ .+..|..+..++...|+.+.|.+.|.+.++.+ |+... .+.+...+-..|++.+|...+.+.++.
T Consensus 139 y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln---P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~- 213 (966)
T KOG4626|consen 139 YRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN---PDLYCARSDLGNLLKAEGRLEEAKACYLKAIET- 213 (966)
T ss_pred HHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC---cchhhhhcchhHHHHhhcccchhHHHHHHHHhh-
Confidence 9999988544 78899999999999999999999999999976 55444 344555556689999999999998875
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006624 262 LQPT-AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLIN 340 (638)
Q Consensus 262 ~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 340 (638)
.|. ...|+.|...+-.+|+...|+..|++....++. -...|..|...|...+.+++|+..|.+.....+. ..+++.
T Consensus 214 -qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~g 290 (966)
T KOG4626|consen 214 -QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHG 290 (966)
T ss_pred -CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhcc
Confidence 344 567999999999999999999999999987654 4678899999999999999999999999876433 567888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006624 341 NLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKT 420 (638)
Q Consensus 341 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 420 (638)
.+...|...|.+|.|+..|++..+.. |+ =+..|+.|..++-..
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~--P~-----------------------------------F~~Ay~NlanALkd~ 333 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQ--PN-----------------------------------FPDAYNNLANALKDK 333 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcC--CC-----------------------------------chHHHhHHHHHHHhc
Confidence 89999999999999999999887632 21 134677788888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 006624 421 NRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLF 500 (638)
Q Consensus 421 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 500 (638)
|++.+|.+.|.+..... +....+.+.|...|...|.+++|..+|....+. .+.-....+.|...|-.+|++++|+..+
T Consensus 334 G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v-~p~~aaa~nNLa~i~kqqgnl~~Ai~~Y 411 (966)
T KOG4626|consen 334 GSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV-FPEFAAAHNNLASIYKQQGNLDDAIMCY 411 (966)
T ss_pred cchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh-ChhhhhhhhhHHHHHHhcccHHHHHHHH
Confidence 99999999999988875 667788899999999999999999999998884 3333567889999999999999999999
Q ss_pred HHHHhCCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 006624 501 NEMKKLRCKPD-VYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD-INSHNIILNGLAKSGGPKRAMEIFTKMQHSEI 578 (638)
Q Consensus 501 ~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 578 (638)
++..+ +.|+ ...|+.+...|-..|+.+.|++.+.+++.. .|. ...++.|...|-..|++.+|+.-++.... +
T Consensus 412 kealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--l 485 (966)
T KOG4626|consen 412 KEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--L 485 (966)
T ss_pred HHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--c
Confidence 99887 4676 668999999999999999999999999984 455 67889999999999999999999999885 4
Q ss_pred CCCH-HHHHHHHHHHH
Q 006624 579 KPDA-VSYNTILGCLS 593 (638)
Q Consensus 579 ~p~~-~~~~~l~~~~~ 593 (638)
+||. ..|..++.++-
T Consensus 486 kPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 486 KPDFPDAYCNLLHCLQ 501 (966)
T ss_pred CCCCchhhhHHHHHHH
Confidence 6663 45666666553
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=6.7e-20 Score=197.90 Aligned_cols=506 Identities=10% Similarity=0.019 Sum_probs=282.5
Q ss_pred ccchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 006624 102 DVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALS 181 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 181 (638)
.++++.|+..|+.+.+.. |.+..++..+.+.|.+.|++++|...+++.++. .|+...+...+..+ +++++|..
T Consensus 57 ~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 57 NNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHH
Confidence 366777777787776655 456777777888888888888888888877774 33333333322222 77777777
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHH--------HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHH-HHHHHccCChHHHHH
Q 006624 182 IFYQIKSRKCKPTANTYNSMILM--------LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSAL-ISAFGKLGRDISAIR 252 (638)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~ 252 (638)
+|+++.+..+. +...+..+... |.+.++..++++ .....+. |+..+.... ...|.+.|++++|++
T Consensus 130 ~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~~~-~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 130 TVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DATFAAS-PEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH----HhhhCCC-CCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 77777776433 44444444444 444433333333 2221211 334433333 667777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006624 253 LFDEMKENGLQPTAKIYTTLVSIYFK-LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 253 ~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
++.++.+.+ +.+......|...|.. .++ +++..+++... .-+...+..++..|.+.|+.++|.++++++...-
T Consensus 204 lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~l----k~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 204 LYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGI----FTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhc----ccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 777777664 2344445555555555 244 55555544211 1355566666666666666666666665543211
Q ss_pred CC-C----------------------------------------------------------------------------
Q 006624 332 CK-P---------------------------------------------------------------------------- 334 (638)
Q Consensus 332 ~~-p---------------------------------------------------------------------------- 334 (638)
.. |
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 357 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRN 357 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCc
Confidence 00 0
Q ss_pred -----------------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHhHHHHHHHHHHhcCChHHH--HHH
Q 006624 335 -----------------DIVLINNLINVLGRAGRLEDALKLFNKMEAL--QCKPNVVTYNTVIKSLFESKAPASE--ASA 393 (638)
Q Consensus 335 -----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a--~~~ 393 (638)
+......+.....+.|+.++|..+++..... +..++....+.++..+.+.+..... +..
T Consensus 358 ~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 358 KAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 1111111122233456666666666666442 1122223333445554444331100 000
Q ss_pred H----------------------HHHHHh-CCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 006624 394 W----------------------FEKMKA-NGV-LP--SPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCS 447 (638)
Q Consensus 394 ~----------------------~~~~~~-~~~-~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 447 (638)
+ .+.... .+. ++ +...|..+..++.. ++.++|...+.+..... |+......
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~ 514 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRA 514 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHH
Confidence 0 011110 011 23 45566666666655 67777777666666543 44434444
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC
Q 006624 448 LINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGM 527 (638)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 527 (638)
+...+...|++++|...|+++... +|+...+..+...+...|++++|...+++..+.. +++...+..+...+...|+
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr 591 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQ 591 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCC
Confidence 444556777777777777776553 3333445555666777777777777777776653 2222223333333445577
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 528 IDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKD 607 (638)
Q Consensus 528 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 607 (638)
+++|...+++.++. .|+...+..+...+.+.|++++|...+++..... +.+...++.+..++...|++++|+..+++
T Consensus 592 ~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 592 PELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777777777764 4566677777777777777777777777777542 12455666677777777777777777777
Q ss_pred HHhCCCCCCHhhHHHHHHHHhccCCccCC
Q 006624 608 MNAKGFEYDQITYSSILEAVGKVDEDRNP 636 (638)
Q Consensus 608 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 636 (638)
..+.. +-+...+..+..++...|+.++|
T Consensus 669 AL~l~-P~~~~a~~nLA~al~~lGd~~eA 696 (987)
T PRK09782 669 AHKGL-PDDPALIRQLAYVNQRLDDMAAT 696 (987)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 76542 33445666677777777766554
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=3e-19 Score=189.84 Aligned_cols=431 Identities=13% Similarity=0.003 Sum_probs=264.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
..+......+.+.|++++|+..|++.+. ..|++..|..+..+|.+.|++++|+..+.+..+..+. +...|..+..+|
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~ 204 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 3466778888999999999999999887 5677888888999999999999999999999887533 677888899999
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006624 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKA 285 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 285 (638)
...|++++|+..|..+...+. .+......++..+.. ..+........+.. +++...+..+.. |......+..
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~--~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~ 276 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDG--FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPR 276 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCC--CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcc
Confidence 999999999998887766543 222222222222111 12233333333321 222222222222 2221111111
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHccCCHHHHHHHHH
Q 006624 286 LGLVQEMKGKGCALTVYTYTELIKG---LGRAGRVEDAYGLFMNMLKEG-CKP-DIVLINNLINVLGRAGRLEDALKLFN 360 (638)
Q Consensus 286 ~~~~~~m~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 360 (638)
..-+....+.... ....+..+... ....+++++|...|+...+.+ ..| +...++.+...+...|++++|...++
T Consensus 277 ~~~~~~~~~~~~~-~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 277 PAGLEDSNELDEE-TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred hhhhhcccccccc-cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1111111111100 00111111111 123467888888888888764 222 44567777888888889999998888
Q ss_pred HHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006624 361 KMEALQCKPN-VVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFP 439 (638)
Q Consensus 361 ~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 439 (638)
+..+.. |+ ...|..+...+...|+..++ ...++...+.. +.+...|..+...+...|++++|...|++..+.. +
T Consensus 356 kal~l~--P~~~~~~~~la~~~~~~g~~~eA-~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P 430 (615)
T TIGR00990 356 KSIELD--PRVTQSYIKRASMNLELGDPDKA-EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-P 430 (615)
T ss_pred HHHHcC--CCcHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-c
Confidence 887643 44 33555555555666666555 55555555442 3345667777777777777777777777777664 5
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh------
Q 006624 440 PCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVY------ 513 (638)
Q Consensus 440 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------ 513 (638)
.+...+..+...+.+.|++++|...|+...+. .+.+...++.+...+...|++++|...|++..+..-..+..
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~ 509 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP 509 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence 56666777777777777777777777777664 34456677777777777777777777777766542110110
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006624 514 TYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
.++.....+...|++++|.+++++.++.. +.+...+..++..+.+.|++++|.+.|++..+
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 11111222333577777777777776643 12344566677777777777777777777664
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1e-18 Score=176.47 Aligned_cols=499 Identities=15% Similarity=0.122 Sum_probs=380.0
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhCCCHHHHHHH
Q 006624 105 INVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTC--VMGPSVLSEIVNILGKAKMVNKALSI 182 (638)
Q Consensus 105 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 182 (638)
...+++.+.-+-... ++++.+.+.|.+-|.-.|++..+|.+...+..... +.-...|..+.++|...|++++|...
T Consensus 252 ~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 355666666554444 46788999999999999999999999999877531 23345689999999999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC----ChHHHHHHHHHHH
Q 006624 183 FYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG----RDISAIRLFDEMK 258 (638)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~m~ 258 (638)
|.+..+......+..+--++..+++.|+++.+...|+.+.+..+ .+..+...|...|...+ ..+.|..++.+..
T Consensus 330 Y~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p--~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 330 YMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP--NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc--chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 99988774433355566788999999999999999999999875 56778888888887775 5577888888877
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---C
Q 006624 259 ENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMK----GKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE---G 331 (638)
Q Consensus 259 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~ 331 (638)
+.- +.|...|-.+...+....-+.. +..|.... ..+-.+.....|.+...+...|.+++|...|+..... .
T Consensus 408 ~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 408 EQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred hcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 753 4578889888888876655444 66665543 3454578899999999999999999999999998865 1
Q ss_pred CCCCH------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCC
Q 006624 332 CKPDI------VLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLP 405 (638)
Q Consensus 332 ~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 405 (638)
..+|. .+-..+...+-..++.+.|.+.|..+.+.. |+.+....-+.+..+.......+..++....... ..
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~ 562 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SS 562 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cC
Confidence 22232 234456777778889999999999998854 6766555555455555454444477777666542 45
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHc------------cCCHHHHHHHHHHHHHcC
Q 006624 406 SPFTYSILIDGFCKTNRVEKAHLLLEEMEEKG-FPPCPAAYCSLINGYGK------------AKRYEAANELFLELKEYC 472 (638)
Q Consensus 406 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~~~ 472 (638)
++..++.+...+.+...+..|.+-|+...+.- ..+|+.+..+|.+.|.. .+..++|+++|.++++.
T Consensus 563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~- 641 (1018)
T KOG2002|consen 563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN- 641 (1018)
T ss_pred CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc-
Confidence 66677778889999999999999777766542 23677777777776543 24678899999999886
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHH
Q 006624 473 GCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED-GCVPDINSHN 551 (638)
Q Consensus 473 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~ 551 (638)
.+.|...-|-+.-+++..|++.+|..+|.+..+... .+..+|-.+.++|...|++..|+++|+...+. ....+.....
T Consensus 642 dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~ 720 (1018)
T KOG2002|consen 642 DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLH 720 (1018)
T ss_pred CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 567788889999999999999999999999988642 34567889999999999999999999987765 4445788899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHHhCCC
Q 006624 552 IILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCL------------------SRAGMFEEAARLMKDMNAKGF 613 (638)
Q Consensus 552 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~------------------~~~g~~~~A~~~~~~m~~~~~ 613 (638)
.|.+++.+.|++.+|.+.+.........-..+.||..+-.. ...+..+.|.++|.+|...+-
T Consensus 721 ~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 721 YLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999988754333344555443222 233567889999999987653
Q ss_pred C
Q 006624 614 E 614 (638)
Q Consensus 614 ~ 614 (638)
.
T Consensus 801 ~ 801 (1018)
T KOG2002|consen 801 K 801 (1018)
T ss_pred C
Confidence 3
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=1.4e-17 Score=180.14 Aligned_cols=430 Identities=12% Similarity=0.069 Sum_probs=281.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC
Q 006624 167 VNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ-EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG 245 (638)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 245 (638)
.+.|.+.|++++|+..+.++.+.++. +......+..+|.+ .++ +++..+++...+ .+...+..+...+.+.|
T Consensus 189 ~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk-----~d~~l~~ala~~yi~~G 261 (987)
T PRK09782 189 LQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIF-----TDPQSRITYATALAYRG 261 (987)
T ss_pred HHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcc-----cCHHHHHHHHHHHHHCC
Confidence 66666667777777777776666433 44445555566665 255 555555443111 45566666777777777
Q ss_pred ChHHHHHHHHHHHHCCCC-CCHHHH------------------------------HHHHHHHHhcCCHHHHHHHH-----
Q 006624 246 RDISAIRLFDEMKENGLQ-PTAKIY------------------------------TTLVSIYFKLGEVEKALGLV----- 289 (638)
Q Consensus 246 ~~~~A~~~~~~m~~~g~~-~~~~~~------------------------------~~li~~~~~~g~~~~A~~~~----- 289 (638)
+.++|.++++++...-.. |+..++ ..++..+.+.++++.++++.
T Consensus 262 ~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (987)
T PRK09782 262 EKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPA 341 (987)
T ss_pred CHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCc
Confidence 777777766665432111 111111 11133344444444443331
Q ss_pred ------------------------HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHH
Q 006624 290 ------------------------QEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE--GCKPDIVLINNLI 343 (638)
Q Consensus 290 ------------------------~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~ 343 (638)
+.|.+..+. +......+.-...+.|+.++|.++|+..... .-.++......++
T Consensus 342 ~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~ 420 (987)
T PRK09782 342 NEMLEERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLA 420 (987)
T ss_pred chHHHHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHH
Confidence 111111110 2222333333456678889999999888762 1223455566788
Q ss_pred HHHHccCC---HHHHHHH----------------------HHHHHHC-CCCC---CHhHHHHHHHHHHhcCChHHHHHHH
Q 006624 344 NVLGRAGR---LEDALKL----------------------FNKMEAL-QCKP---NVVTYNTVIKSLFESKAPASEASAW 394 (638)
Q Consensus 344 ~~~~~~g~---~~~A~~~----------------------~~~~~~~-~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~ 394 (638)
..|.+.+. ..++..+ ++..... +..| +...|..+-..+.. ++..++ ...
T Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eA-i~a 498 (987)
T PRK09782 421 SLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVA-LYA 498 (987)
T ss_pred HHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHH-HHH
Confidence 88887766 3333222 1111111 1212 45555655555554 666666 444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 006624 395 FEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGC 474 (638)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 474 (638)
+...... .|+......+...+...|++++|...++++... +|+...+..+...+.+.|+.++|...++...+.. +
T Consensus 499 ~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P 573 (987)
T PRK09782 499 WLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-L 573 (987)
T ss_pred HHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C
Confidence 4444433 356554444555667999999999999998665 4555667778888999999999999999999864 3
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006624 475 SSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIIL 554 (638)
Q Consensus 475 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 554 (638)
.+...+..+.......|++++|...+++..+. .|+...|..+...+.+.|++++|+..+++.++.. +.+...++.+.
T Consensus 574 ~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG 650 (987)
T PRK09782 574 GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALG 650 (987)
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34444444445555669999999999999885 4788889999999999999999999999999974 33577888999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 006624 555 NGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQ 617 (638)
Q Consensus 555 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 617 (638)
..+...|++++|+..+++..+.. +-+...+..+..++...|++++|...+++..+. .|+.
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~ 710 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQ 710 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC
Confidence 99999999999999999998753 225778899999999999999999999999854 4554
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1e-18 Score=176.37 Aligned_cols=520 Identities=15% Similarity=0.102 Sum_probs=364.3
Q ss_pred chHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCCHHHHHH
Q 006624 104 EINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRST--CVMGPSVLSEIVNILGKAKMVNKALS 181 (638)
Q Consensus 104 ~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 181 (638)
+.+.|.+.|..+.++. ++++-..---+.+....++|..|..+|+.++... +.+|+. ..+..++.+.|+.+.|+.
T Consensus 145 ~~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 145 SMDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALL 220 (1018)
T ss_pred cHHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHH
Confidence 3578999999888777 6677666666677778899999999999977653 344443 445577889999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhc---CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 006624 182 IFYQIKSRKCKPTANTYNSMILMLMQE---GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMK 258 (638)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 258 (638)
.|.+..+.++ .++.++-.|...-... ..+..++.++...-..++ .|+...+.|...|.-.|++..+..+.+.+.
T Consensus 221 a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 221 AFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred HHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 9999998854 2444444444333333 346778888888888776 678888999999999999999999999998
Q ss_pred HCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 006624 259 ENGLQ--PTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDI 336 (638)
Q Consensus 259 ~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 336 (638)
..... .-...|..+..+|-..|++++|...|.+..+....--...+--+...+.+.|+++.+...|+...+..+ -+.
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~ 376 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNY 376 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chH
Confidence 75311 123458889999999999999999998888764432244555678899999999999999999998743 367
Q ss_pred HHHHHHHHHHHccC----CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH----HHHhCCCCCCHH
Q 006624 337 VLINNLINVLGRAG----RLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFE----KMKANGVLPSPF 408 (638)
Q Consensus 337 ~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~ 408 (638)
.+...|...|...+ ..+.|..++.+..+.. .-|...|-.+-. +...++.... ...+. .+...+-.+.+.
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laq-l~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E 453 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQ-LLEQTDPWAS-LDAYGNALDILESKGKQIPPE 453 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHH-HHHhcChHHH-HHHHHHHHHHHHHcCCCCCHH
Confidence 78888888887775 5677777777776643 224445544443 4445555444 44433 344555567788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCH------hhHHHHHHHHHccCCHHHHHHHHHHHHHcC-------
Q 006624 409 TYSILIDGFCKTNRVEKAHLLLEEMEEK---GFPPCP------AAYCSLINGYGKAKRYEAANELFLELKEYC------- 472 (638)
Q Consensus 409 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------- 472 (638)
..|.+...+...|++++|...|...... ...++. .+-..+...+-..++.+.|.+.|..+.+..
T Consensus 454 ~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~y 533 (1018)
T KOG2002|consen 454 VLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAY 533 (1018)
T ss_pred HHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHH
Confidence 8899999999999999999999887654 111222 123334444555556666666666665531
Q ss_pred --------------------------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHH-
Q 006624 473 --------------------------GCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL-RCKPDVYTYNALMSGMVR- 524 (638)
Q Consensus 473 --------------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~- 524 (638)
...++..++.+...+.+...+..|..-|+...+. ...+|.++.-.|...|.+
T Consensus 534 lRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~ 613 (1018)
T KOG2002|consen 534 LRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA 613 (1018)
T ss_pred HHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH
Confidence 2233444444444555555555555544443322 112455555556555542
Q ss_pred -----------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 006624 525 -----------AGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLS 593 (638)
Q Consensus 525 -----------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 593 (638)
.+..++|+++|.+.++.. +-|...-|.+.-.++..|++.+|..+|.+..+... -+..+|-.+.++|.
T Consensus 614 l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 614 LHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYV 691 (1018)
T ss_pred hcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHH
Confidence 234678888998888864 33777778888889999999999999999987543 24556888999999
Q ss_pred hcCCHHHHHHHHHHHHh-CCCCCCHhhHHHHHHHHhccCCccCC
Q 006624 594 RAGMFEEAARLMKDMNA-KGFEYDQITYSSILEAVGKVDEDRNP 636 (638)
Q Consensus 594 ~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~a 636 (638)
..|++..|+++|+...+ ..-.-+..+...|.+++.+.|.+.+|
T Consensus 692 e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea 735 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA 735 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999998765 34455677888888998888877654
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=2.1e-20 Score=188.85 Aligned_cols=304 Identities=14% Similarity=0.139 Sum_probs=217.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHh
Q 006624 131 LIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT---ANTYNSMILMLMQ 207 (638)
Q Consensus 131 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 207 (638)
....+...|++++|+..|+++++.+ +.+..++..+...+...|++++|...++.+...+..++ ...+..++..|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445677889999999999998864 45667888888888999999999999988877532221 2567788888889
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHH
Q 006624 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPT----AKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~ 283 (638)
.|++++|..+|+++.+..+ .+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..++..+.+.|+++
T Consensus 120 ~g~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGD--FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CCCHHHHHHHHHHHHcCCc--chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999887654 6677888888999999999999999998887653322 224566777888888999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006624 284 KALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 284 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 363 (638)
+|.+.++++.+..+. +...+..+...+.+.|++++|.++|+++.+.+......+++.++.+|.+.|++++|...++.+.
T Consensus 198 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999998888876533 5667777888888888999999888888876443334567788888888888888888888877
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCC
Q 006624 364 ALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK---TNRVEKAHLLLEEMEEKGFPP 440 (638)
Q Consensus 364 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~ 440 (638)
+.. |+...+..+...+.+.|+..++ ..+++.+.+. .|+..++..++..+.. .|+.++++.+++++.+.++.+
T Consensus 277 ~~~--p~~~~~~~la~~~~~~g~~~~A-~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 277 EEY--PGADLLLALAQLLEEQEGPEAA-QALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred HhC--CCchHHHHHHHHHHHhCCHHHH-HHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 643 4444445555555555555554 4555544443 3555555555555443 335566666666666554444
Q ss_pred CHh
Q 006624 441 CPA 443 (638)
Q Consensus 441 ~~~ 443 (638)
++.
T Consensus 352 ~p~ 354 (389)
T PRK11788 352 KPR 354 (389)
T ss_pred CCC
Confidence 443
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=4.2e-20 Score=186.69 Aligned_cols=306 Identities=18% Similarity=0.207 Sum_probs=168.3
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc
Q 006624 238 ISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT---VYTYTELIKGLGRA 314 (638)
Q Consensus 238 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~ 314 (638)
...+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 444556677777777777777653 23455666677777777777777777776665432211 23456666666677
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 006624 315 GRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAW 394 (638)
Q Consensus 315 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 394 (638)
|++++|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+.+.+..+...
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------------------- 177 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV---------------------- 177 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH----------------------
Confidence 77777777777766542 2355566666667777777777766666665432111000
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 006624 395 FEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGC 474 (638)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 474 (638)
.....+..+...+.+.|++++|...++++.+.. +.+...+..++..+.+.|++++|.+.++++.+.+..
T Consensus 178 ----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 246 (389)
T PRK11788 178 ----------EIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE 246 (389)
T ss_pred ----------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence 001123345555666677777777777666543 344455555566666666666666666665553222
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006624 475 SSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIIL 554 (638)
Q Consensus 475 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 554 (638)
....+++.++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++
T Consensus 247 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~ 322 (389)
T PRK11788 247 YLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLL 322 (389)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHH
Confidence 22334455555555555555555555555543 244444445555555555555555555555543 34555555444
Q ss_pred HHHHh---cCCHHHHHHHHHHhhhCCCCCCH
Q 006624 555 NGLAK---SGGPKRAMEIFTKMQHSEIKPDA 582 (638)
Q Consensus 555 ~~~~~---~g~~~~A~~~~~~m~~~~~~p~~ 582 (638)
..+.. .|+.+++..++++|.+.++.|++
T Consensus 323 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 323 DYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 44442 23455555555555544444443
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=3.5e-18 Score=180.87 Aligned_cols=333 Identities=11% Similarity=0.071 Sum_probs=229.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 006624 128 YMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ 207 (638)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (638)
.-.++..+.+.|++++|..+++..+... +-++..+..++.+....|++++|...|+++.+..+. +...+..+...+.+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 3456777888999999999998888754 455666777777888899999999999999887543 67788888889999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006624 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALG 287 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 287 (638)
.|++++|++.|+++....+ .+...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++|..
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P--~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFS--GNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred cCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHH
Confidence 9999999999999988765 5677888888889999999999999988876532 233344333 34778899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH----HHHHHHHHH
Q 006624 288 LVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLED----ALKLFNKME 363 (638)
Q Consensus 288 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~ 363 (638)
.++.+.+....++...+..+...+...|++++|...++++.+.... +...+..+...+...|++++ |...++++.
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 9988877654445555566677888899999999999998877543 67777888888888888875 677777776
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 006624 364 ALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPA 443 (638)
Q Consensus 364 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 443 (638)
.... .+...+..+...+...|+..++ ...++...... +.+...+..+..++.+.|++++|...++++.+.+ +.+..
T Consensus 278 ~l~P-~~~~a~~~lg~~l~~~g~~~eA-~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~ 353 (656)
T PRK15174 278 QFNS-DNVRIVTLYADALIRTGQNEKA-IPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSK 353 (656)
T ss_pred hhCC-CCHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchH
Confidence 6431 1333444555555555555554 44444444432 2233444555555666666666666666555543 22223
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 006624 444 AYCSLINGYGKAKRYEAANELFLELKEY 471 (638)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~~~~~ 471 (638)
.+..+..++...|+.++|.+.|+.+.+.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3333444555566666666666665553
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=3.5e-18 Score=180.86 Aligned_cols=335 Identities=11% Similarity=0.065 Sum_probs=242.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 006624 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (638)
-...++..+.+.|++++|..+++......+. +...+..++.+....|++++|.+.|+++....+ .+...+..+...+
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P--~~~~a~~~la~~l 120 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV--CQPEDVLLVASVL 120 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHH
Confidence 3455667788899999999999999887555 566666777888889999999999999999876 5677888889999
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006624 242 GKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAY 321 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 321 (638)
...|++++|...++++.+.. +.+...+..++..+...|++++|...++.+....+. +...+..+ ..+...|++++|.
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHH
Confidence 99999999999999998853 345778888999999999999999999988776554 33334333 3478899999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHH---HHHHHHHH
Q 006624 322 GLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASE---ASAWFEKM 398 (638)
Q Consensus 322 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a---~~~~~~~~ 398 (638)
..++.+.+....++......+...+.+.|++++|...++.+..... .+...+..+-..+...|+..++ +...++..
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 9999988775444555556667788899999999999999887542 2344555566666666666542 45666666
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHH
Q 006624 399 KANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSAR 478 (638)
Q Consensus 399 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 478 (638)
.... +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+..++.+.|++++|.+.++.+..... .+..
T Consensus 277 l~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P-~~~~ 353 (656)
T PRK15174 277 LQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG-VTSK 353 (656)
T ss_pred HhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-cchH
Confidence 5542 2345566666777777777777777777776654 55566666667777777777777777777666422 2223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 479 VYAVMIKHFGKCGRLSDAVDLFNEMKKL 506 (638)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (638)
.+..+..++...|+.++|...|++..+.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3334455666677777777777766654
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=1.4e-17 Score=177.08 Aligned_cols=432 Identities=14% Similarity=-0.017 Sum_probs=306.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006624 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
..+....+.+.+.|++++|+..|++..+. .|+...|..+..+|.+.|++++|++.++..++..+ .+...|..+..+
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p--~~~~a~~~~a~a 203 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP--DYSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHH
Confidence 34567788889999999999999998876 56778888999999999999999999999998765 577888889999
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006624 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDA 320 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 320 (638)
+...|++++|+..|......+- .+......++..+.. ..+........+.... +...+..+.. +........+
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~ 276 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRPKPR 276 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccCCcc
Confidence 9999999999998877665431 122222222222222 2233333333333221 2222222222 2222222222
Q ss_pred HHHHHHHHHcCCCCCH-HHHHHHHHH---HHccCCHHHHHHHHHHHHHCC-CCCC-HhHHHHHHHHHHhcCChHHHHHHH
Q 006624 321 YGLFMNMLKEGCKPDI-VLINNLINV---LGRAGRLEDALKLFNKMEALQ-CKPN-VVTYNTVIKSLFESKAPASEASAW 394 (638)
Q Consensus 321 ~~~~~~~~~~~~~p~~-~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 394 (638)
..-+....+. .++. ..+..+... ....+++++|.+.|+...+.+ ..|+ ...++.+...+...|+..++ ...
T Consensus 277 ~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA-~~~ 353 (615)
T TIGR00990 277 PAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEA-LAD 353 (615)
T ss_pred hhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHH-HHH
Confidence 2222221111 1111 111111111 123478999999999998764 2343 44566666677778888877 777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 006624 395 FEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGC 474 (638)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 474 (638)
++...... +.+...|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|++..+. .+
T Consensus 354 ~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-~P 430 (615)
T TIGR00990 354 LSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-DP 430 (615)
T ss_pred HHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-Cc
Confidence 77777652 2346688889999999999999999999998875 777899999999999999999999999999986 44
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH------
Q 006624 475 SSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDIN------ 548 (638)
Q Consensus 475 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------ 548 (638)
.+...+..+...+.+.|++++|+..|++..+.. +.+...|+.+...+...|++++|++.|++.++.....+..
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~ 509 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP 509 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence 567888889999999999999999999998753 3457788999999999999999999999999853221111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 549 SHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAK 611 (638)
Q Consensus 549 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 611 (638)
.++..+..+...|++++|.+++++...... .+...+..+...+.+.|++++|.++|++..+.
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 122222334457999999999999886532 24557889999999999999999999999864
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=4.3e-17 Score=176.48 Aligned_cols=428 Identities=14% Similarity=0.075 Sum_probs=287.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHH
Q 006624 156 CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYS 235 (638)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 235 (638)
.+.++....-.+......|+.++|++++.+..... +.+...+..+..++.+.|++++|.++|++.+...+ .+...+.
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~ 87 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP--QNDDYQR 87 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHH
Confidence 35666777777788888888899988888887632 34566788888888888999999998888888765 5566677
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006624 236 ALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAG 315 (638)
Q Consensus 236 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 315 (638)
.++..+...|++++|+..++++.+.. +.+.. +..+...+...|+.++|+..++++.+..+. +...+..+...+...|
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Confidence 88888888888888888888888762 33555 778888888888888888888888887655 5666666777777888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCh--
Q 006624 316 RVEDAYGLFMNMLKEGCKPDIV------LINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAP-- 387 (638)
Q Consensus 316 ~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~-- 387 (638)
..++|+..++.... .|+.. ....++......+. ...++.
T Consensus 165 ~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~------------------------------~~~~r~~~ 211 (765)
T PRK10049 165 LSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTR------------------------------SEKERYAI 211 (765)
T ss_pred ChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc------------------------------ChhHHHHH
Confidence 88888887776553 23310 00111111110000 000000
Q ss_pred HHHHHHHHHHHHhC-CCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHH
Q 006624 388 ASEASAWFEKMKAN-GVLPSPF-TY----SILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAA 461 (638)
Q Consensus 388 ~~a~~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 461 (638)
.+.+...++.+... ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.+........+...|...|++++|
T Consensus 212 ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A 291 (765)
T PRK10049 212 ADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKA 291 (765)
T ss_pred HHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 01123333444322 1112111 11 111234456688888888888888765221122333357788888888888
Q ss_pred HHHHHHHHHcCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----------CCCC---HhhHHHHHHHHHH
Q 006624 462 NELFLELKEYCGCS---SARVYAVMIKHFGKCGRLSDAVDLFNEMKKLR-----------CKPD---VYTYNALMSGMVR 524 (638)
Q Consensus 462 ~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~p~---~~~~~~l~~~~~~ 524 (638)
...|+.+.+..... .......+..++...|++++|...++.+.+.. -.|+ ...+..+...+..
T Consensus 292 ~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 292 QSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY 371 (765)
T ss_pred HHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH
Confidence 88888877643211 13455666777888899999998888887642 0122 1234566777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 006624 525 AGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD-AVSYNTILGCLSRAGMFEEAAR 603 (638)
Q Consensus 525 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 603 (638)
.|+.++|+++++++.... +-+...+..++..+...|++++|++.+++.... .|+ ...+...+..+...|++++|..
T Consensus 372 ~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~ 448 (765)
T PRK10049 372 SNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDV 448 (765)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999998763 335778888888999999999999999998864 455 5566677778889999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHH
Q 006624 604 LMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 604 ~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
+++++.+. .|+......+-+..
T Consensus 449 ~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 449 LTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHH
Confidence 99999853 55555444443333
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=1.9e-17 Score=179.32 Aligned_cols=406 Identities=12% Similarity=0.050 Sum_probs=262.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 006624 121 FEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNS 200 (638)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 200 (638)
.+.++.--.-.+.+....|+.++|++++...... -+.+...+..+...+.+.|++++|..+|++..+..+ .+...+..
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~ 88 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRG 88 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 3556677778889999999999999999998763 255666799999999999999999999999988743 36777888
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006624 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
++..+...|++++|+..++++.+..+ .+.. +..+...+...|+.++|+..++++.+.. +.+...+..+...+...|
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P--~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAP--DKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC--CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999865 5566 8889999999999999999999999874 335667777888999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHHc-CCCCCHH-HHH----
Q 006624 281 EVEKALGLVQEMKGKGCALTV------YTYTELIKGLG-----RAGRV---EDAYGLFMNMLKE-GCKPDIV-LIN---- 340 (638)
Q Consensus 281 ~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~~~~~-~~~p~~~-~~~---- 340 (638)
..++|++.++.... .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+.
T Consensus 165 ~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 165 LSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred ChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 99999999987664 2221 01111222221 11223 5566666666643 1122211 110
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006624 341 NLINVLGRAGRLEDALKLFNKMEALQCK-PNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK 419 (638)
Q Consensus 341 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 419 (638)
..+..+...|++++|...|+.+.+.+.. |+.. . ..+...|..
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-----------------------------------~--~~la~~yl~ 284 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-----------------------------------Q--RWVASAYLK 284 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-----------------------------------H--HHHHHHHHh
Confidence 1122334456666666666665543311 1111 1 112344555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-----------CCc---HHHHH
Q 006624 420 TNRVEKAHLLLEEMEEKGFPPC----PAAYCSLINGYGKAKRYEAANELFLELKEYCG-----------CSS---ARVYA 481 (638)
Q Consensus 420 ~~~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~ 481 (638)
.|++++|+..|+++.+.. +.+ ......+..++...|++++|.+.++.+..... .|+ ...+.
T Consensus 285 ~g~~e~A~~~l~~~l~~~-p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~ 363 (765)
T PRK10049 285 LHQPEKAQSILTELFYHP-ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS 363 (765)
T ss_pred cCCcHHHHHHHHHHhhcC-CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH
Confidence 555555555555554432 111 12334444455555566666655555554311 112 22344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 006624 482 VMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD-INSHNIILNGLAKS 560 (638)
Q Consensus 482 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 560 (638)
.+...+...|++++|+..++++.... +.+...+..+...+...|++++|++.+++.++. .|+ ...+...+..+...
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~ 440 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDL 440 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHh
Confidence 55666667777777777777766542 334556666666777777777777777777764 233 45555556666677
Q ss_pred CCHHHHHHHHHHhhhC
Q 006624 561 GGPKRAMEIFTKMQHS 576 (638)
Q Consensus 561 g~~~~A~~~~~~m~~~ 576 (638)
|++++|..+++++++.
T Consensus 441 ~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 441 QEWRQMDVLTDDVVAR 456 (765)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7777777777777653
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=2.7e-16 Score=166.70 Aligned_cols=454 Identities=14% Similarity=0.087 Sum_probs=299.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 006624 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG--PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYN 199 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 199 (638)
+..+.+--.-+-...++|+++.|+..|++.++.. |+ +.++ .++..+...|+.++|+..+++..... ........
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~ll 106 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLA 106 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHH
Confidence 3344444455556778888888888888887743 33 2344 77777778888888888888877321 12333334
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006624 200 SMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL 279 (638)
Q Consensus 200 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 279 (638)
.+...+...|++++|+++|+++.+..+ .+...+..++..+...++.++|++.++++... .|+...+..++..+...
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP--~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~ 182 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDP--TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhc
Confidence 445677777888888888888888776 45566667777788888888888888888765 35555554555555456
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006624 280 GEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLF 359 (638)
Q Consensus 280 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 359 (638)
++..+|++.++++.+..+. +...+..+...+.+.|-...|.++..+- |+..+-..... =+.+.|.+..
T Consensus 183 ~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~-----l~~~~~a~~v 250 (822)
T PRK14574 183 DRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQ-----LERDAAAEQV 250 (822)
T ss_pred chHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHH-----HHHHHHHHHH
Confidence 6666688888888877644 6677777777888888777777665542 22211111100 0112222222
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCCCC-CHHHH----HHHHHHHHhcCCHHHHHHHHHHH
Q 006624 360 NKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKA-NGVLP-SPFTY----SILIDGFCKTNRVEKAHLLLEEM 433 (638)
Q Consensus 360 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~-~~~~~----~~l~~~~~~~~~~~~A~~~~~~~ 433 (638)
+......-. ...-|.. .+.+..-++.+.. .+-.| ....| --.+-++...|++.++++.|+.+
T Consensus 251 r~a~~~~~~-~~~r~~~-----------~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l 318 (822)
T PRK14574 251 RMAVLPTRS-ETERFDI-----------ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAM 318 (822)
T ss_pred hhccccccc-chhhHHH-----------HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 211100000 0000000 1111222233332 11112 21111 12345677889999999999999
Q ss_pred HhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-----CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006624 434 EEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCG-----CSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRC 508 (638)
Q Consensus 434 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 508 (638)
...+.+....+...+.++|...++.++|..++..+..... +++......|..+|...+++++|..+++.+.+...
T Consensus 319 ~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 319 EAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred hhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 9888766677888999999999999999999999876431 23444457888899999999999999999887311
Q ss_pred -------------CCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006624 509 -------------KPD-VYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQ 574 (638)
Q Consensus 509 -------------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 574 (638)
.|| ...+..++..+...|+..+|++.++++.... +-|......+.+.+...|.+.+|.+.++...
T Consensus 399 ~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 399 YQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred cEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 112 1223455677888999999999999998864 3478888899999999999999999997776
Q ss_pred hCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 575 HSEIKPD-AVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 575 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
.. .|+ ..+....+.++...|++.+|..+.+.+.+
T Consensus 478 ~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 478 SL--APRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred hh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 44 454 55666788888899999999999988874
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=1.7e-15 Score=160.71 Aligned_cols=447 Identities=12% Similarity=0.090 Sum_probs=292.2
Q ss_pred cccchHHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 006624 101 IDVEINVKIQFFKWAGRRRNFEHNS-TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKA 179 (638)
Q Consensus 101 ~~~~~~~a~~~f~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 179 (638)
..++...|+..|+.+.+.. +.+. ..+ .++..+...|+.++|...+++.+. ..+........++..+...|++++|
T Consensus 46 r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred hCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4677889999999887554 3332 344 889999999999999999999873 1234445555557789999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006624 180 LSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
+++|+++.+..+. +...+..++..+.+.++.++|++.++++.... |+...+..++..+...++..+|++.++++.+
T Consensus 122 iely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d---p~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 122 LALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD---PTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC---cchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 9999999998655 57778888899999999999999999998865 5666665555555556777679999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006624 260 NGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLI 339 (638)
Q Consensus 260 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 339 (638)
.. +-+...+..+...+.+.|-...|+++.++-... + +...+.-+ . .+.|.+. ++.+..++..-
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f--~~~~~~~l-~-------~~~~a~~----vr~a~~~~~~~- 260 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-V--SAEHYRQL-E-------RDAAAEQ----VRMAVLPTRSE- 260 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-c--CHHHHHHH-H-------HHHHHHH----Hhhcccccccc-
Confidence 74 446788899999999999999999877663322 1 11111111 0 0111111 11111110000
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHh-HH----HHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006624 340 NNLINVLGRAGRLEDALKLFNKMEAL-QCKPNVV-TY----NTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSIL 413 (638)
Q Consensus 340 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~-~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 413 (638)
. . +---.+.|+.-++.+... +..|... .| .-.+.++...++..++ ...++.+...+.+....+-..+
T Consensus 261 ~---~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~v-i~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 261 T---E---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADL-IKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred h---h---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHH-HHHHHHhhhcCCCCCHHHHHHH
Confidence 0 0 000123344444443321 1112111 11 1223344455555555 5556666666654344466667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-----------CC--
Q 006624 414 IDGFCKTNRVEKAHLLLEEMEEKG-----FPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCG-----------CS-- 475 (638)
Q Consensus 414 ~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~-- 475 (638)
.++|...++.++|..+++++.... .+++......|.-++...+++++|..+++.+.+... .|
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 777777788888888877775532 122333356677777777888888888877776311 11
Q ss_pred c-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006624 476 S-ARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIIL 554 (638)
Q Consensus 476 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 554 (638)
| ...+..++..+...|++.+|.+.++++.... +-|......+.+.+...|.+.+|++.++.+.... +-+..+....+
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~ 491 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQA 491 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHH
Confidence 1 2334556677788888888888888887653 5567777788888888888888888887666642 22456666777
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHH
Q 006624 555 NGLAKSGGPKRAMEIFTKMQHSEIKPDAV 583 (638)
Q Consensus 555 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 583 (638)
..+...|++++|..+.+.+.+. .|+..
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~~--~Pe~~ 518 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVISR--SPEDI 518 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh--CCCch
Confidence 7788888888888888887753 45444
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=2.2e-17 Score=152.79 Aligned_cols=482 Identities=16% Similarity=0.159 Sum_probs=295.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhCCCHHHHHHHHHHHhhCCCCC----CHHHHHHH
Q 006624 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVL-SEIVNILGKAKMVNKALSIFYQIKSRKCKP----TANTYNSM 201 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l 201 (638)
+...+.+.|..+....+|+..++-.++....|+.-.+ -.+.+.+.+..++.+|+++|.-....-+.. .....+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 3344555666666666777777766666555554332 224455666667777777666554431111 12334555
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHH--------HHHH
Q 006624 202 ILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIY--------TTLV 273 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~--------~~li 273 (638)
...+.+.|+++.|+.-|+...+.. |+..+-..|+-.+...|+-++..+.|.+|+.....||..-| ..|+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~~---pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEEA---PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHhC---ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 555666777777777777666644 55555444444444556666666667666654222222111 1111
Q ss_pred HHHHhcCC-----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006624 274 SIYFKLGE-----------VEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNL 342 (638)
Q Consensus 274 ~~~~~~g~-----------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 342 (638)
.--.+... .++++-.-.+++.--+.|+-. . -.+-+++.++.-.-..+..+ .-..-
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa-----------~-g~dwcle~lk~s~~~~la~d--lei~k 425 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA-----------A-GCDWCLESLKASQHAELAID--LEINK 425 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh-----------c-ccHHHHHHHHHhhhhhhhhh--hhhhH
Confidence 11111110 011111111111100111100 0 00111111111100000000 00112
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc-CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006624 343 INVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFES-KAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTN 421 (638)
Q Consensus 343 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 421 (638)
..-|.+.|+++.|.++++-+.+..-+......+.+-..++.. |+....+..+-+...... .-+......-......+|
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecC
Confidence 234678999999999999887765554444555544433333 333333344444333221 122222222233445689
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFN 501 (638)
Q Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 501 (638)
++++|.+.|++....+ .....+...+.-.+-..|++++|+++|-++... ...+..+.-.+.+.|....+...|++++.
T Consensus 505 d~dka~~~ykeal~nd-asc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNND-ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred cHHHHHHHHHHHHcCc-hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 9999999999998765 334445555556678889999999999988764 44567788889999999999999999998
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 006624 502 EMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD 581 (638)
Q Consensus 502 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 581 (638)
+.... ++.|......|...|-+.|+-.+|.+++-.--.. ++.|..+...|..-|....-+++|+.+|++.. =+.|+
T Consensus 583 q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~ 658 (840)
T KOG2003|consen 583 QANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPN 658 (840)
T ss_pred Hhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCcc
Confidence 87765 5667888999999999999999999887655443 45688898889999999999999999999976 46899
Q ss_pred HHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCc
Q 006624 582 AVSYNTILG-CLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDED 633 (638)
Q Consensus 582 ~~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 633 (638)
..-|..++. ++.+.|+++.|+++++...++ ++-|..+...|++.|...|-.
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 999997765 556799999999999999875 788999999999999877753
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=3.4e-14 Score=131.06 Aligned_cols=444 Identities=15% Similarity=0.179 Sum_probs=242.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hCCCHH-HHHHHHHHHhhCCCCCCHHHHHHHH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILG--KAKMVN-KALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
.+=|.+++. ...|...++--+|+.|.+.|++.++..-..+++.-+ ...++- .-++.|-.|...|-. +..+|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW---- 190 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW---- 190 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc----
Confidence 344555543 345667777777777777777777766555554332 222222 223445555544422 33333
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006624 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEV 282 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 282 (638)
+.|...+ ++-+. -+ .+..+|..+|.++|+.-..+.|.+++++......+.+..+||.+|.+-.-
T Consensus 191 ----K~G~vAd---L~~E~---~P--KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~---- 254 (625)
T KOG4422|consen 191 ----KSGAVAD---LLFET---LP--KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY---- 254 (625)
T ss_pred ----ccccHHH---HHHhh---cC--CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----
Confidence 2333322 22222 11 45567777788888777777777777777766667777777777765432
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH-HHH
Q 006624 283 EKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVED----AYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLED-ALK 357 (638)
Q Consensus 283 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~ 357 (638)
....+++.+|......||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..
T Consensus 255 ~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 255 SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 2226677777777777777778777777777776654 45566777777777777777777777777666533 444
Q ss_pred HHHHHHHC----CCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC-----CCCC---HHHHHHHHHHHHhcC
Q 006624 358 LFNKMEAL----QCK----PNVVTYNTVIKSLFESKAPASEASAWFEKMKANG-----VLPS---PFTYSILIDGFCKTN 421 (638)
Q Consensus 358 ~~~~~~~~----~~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~ 421 (638)
++.++... ..+ .|...|...+..+....+..-+ .++..-. +.| +.|+ .+-|..+....|+..
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA-~~v~~ll-~tg~N~~~ig~~~~~~fYyr~~~~licq~e 412 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELA-YQVHGLL-KTGDNWKFIGPDQHRNFYYRKFFDLICQME 412 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHH-HHHHHHH-HcCCchhhcChHHHHHHHHHHHHHHHHHHH
Confidence 44444321 111 2344555555555544443322 4442222 222 1222 233455666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFN 501 (638)
Q Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 501 (638)
..+.-...|+.|.-.-+-|+..+...++++..-.|.++-..+++.++...|..-+......+...+++.
T Consensus 413 s~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~----------- 481 (625)
T KOG4422|consen 413 SIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD----------- 481 (625)
T ss_pred HHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC-----------
Confidence 677777777776655555666666666666666677776667766666654433333322222222222
Q ss_pred HHHhCCCCCCHh---hHHHHHHHHHHcCCHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 006624 502 EMKKLRCKPDVY---TYNALMSGMVRAGMIDDA-YSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSE 577 (638)
Q Consensus 502 ~m~~~~~~p~~~---~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 577 (638)
...|+.. -+.....-|+ -++.++ ..--.+|.+.. -.....+...-.+.+.|..++|.+++..+.+++
T Consensus 482 -----k~hp~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 482 -----KLHPLTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred -----CCCCCChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 1222211 1111111111 011111 11122333332 234455556666777777778877777775432
Q ss_pred -C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006624 578 -I---KPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGF 613 (638)
Q Consensus 578 -~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 613 (638)
- .|......-+++.-.+..+...|...++-|...++
T Consensus 553 ~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 553 NKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred CcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 1 22222333455555667777777777777765543
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.78 E-value=3.4e-13 Score=136.28 Aligned_cols=479 Identities=12% Similarity=0.049 Sum_probs=329.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
......++.+...|++++|..++.+.++.. +..+..|..|...|-..|+.+++...+-......+. |..-|-.+....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls 217 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence 344455566666799999999999998864 677888999999999999999999888777766544 678899999999
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCC
Q 006624 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYT----TLVSIYFKLGE 281 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~----~li~~~~~~g~ 281 (638)
.+.|.+++|.-.|.++++..+ ++...+---...|-+.|+...|.+-|.++.....+.|..-+. ..++.+...++
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p--~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~ 295 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANP--SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE 295 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999876 666666666778888999999999999998864322322222 34556667777
Q ss_pred HHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--------------------------
Q 006624 282 VEKALGLVQEMKGK-GCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKP-------------------------- 334 (638)
Q Consensus 282 ~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-------------------------- 334 (638)
-+.|.+.++..... +-..+...++.++..+.+...++.|......+......+
T Consensus 296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS 375 (895)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence 78888888887762 222355677888888889999999988888777622222
Q ss_pred -CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 006624 335 -DIVLINNLINVLGRAGRLEDALKLFNKMEALQ--CKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYS 411 (638)
Q Consensus 335 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 411 (638)
+..++ -+.-++...+..+....+........ ..-+...|.-+..++...+...+| ..++..+.....--+...|-
T Consensus 376 ~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~A-l~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 376 YDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEA-LRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred ccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHH-HHHHHHHhcCccccchhhhH
Confidence 22221 12223344444444444444444444 334556777888888888888888 88888888776666778899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH--------HcCCCCcHHHHHHH
Q 006624 412 ILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELK--------EYCGCSSARVYAVM 483 (638)
Q Consensus 412 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l 483 (638)
.+..+|...|.+++|.+.|+...... |.+..+-..|...+.+.|+.++|.+.+..+. .....|+.......
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r 532 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHR 532 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHH
Confidence 99999999999999999999998875 7777888888888999999999999998854 22344555555666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC-----CCC-----------------CHhhHHHHHHHHHHcCCHHHHHHHHH-----
Q 006624 484 IKHFGKCGRLSDAVDLFNEMKKLR-----CKP-----------------DVYTYNALMSGMVRAGMIDDAYSLLR----- 536 (638)
Q Consensus 484 i~~~~~~g~~~~A~~~~~~m~~~~-----~~p-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~----- 536 (638)
...+...|+.++-+..-..|.... +-| ...+...++.+-.+.++......-..
T Consensus 533 ~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~ 612 (895)
T KOG2076|consen 533 CDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEF 612 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhh
Confidence 677778888777555544443211 111 11122223333333333222111111
Q ss_pred -HHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 537 -RMEEDGCVPDI--NSHNIILNGLAKSGGPKRAMEIFTKMQHSEI--KPDA---VSYNTILGCLSRAGMFEEAARLMKDM 608 (638)
Q Consensus 537 -~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m 608 (638)
--...|+.-+. ..+.-++.++++.|++.+|..+...+..... .++. ..-...+.+....+++..|...++.|
T Consensus 613 ~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~ 692 (895)
T KOG2076|consen 613 RAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSV 692 (895)
T ss_pred hhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 11112222221 2345677788999999999999998886422 2222 22345667778899999999999998
Q ss_pred HhC
Q 006624 609 NAK 611 (638)
Q Consensus 609 ~~~ 611 (638)
...
T Consensus 693 i~~ 695 (895)
T KOG2076|consen 693 ITQ 695 (895)
T ss_pred HHH
Confidence 753
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=1.7e-13 Score=126.52 Aligned_cols=435 Identities=18% Similarity=0.233 Sum_probs=286.4
Q ss_pred cchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH--hcCChH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 006624 103 VEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLD--ETRMIG-VMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKA 179 (638)
Q Consensus 103 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 179 (638)
+....+.-+|. .+++.|.+.+...-..+++.-+ .+.++. .-|+-|-.|...| ..+..+| +.|.+.+
T Consensus 129 ~EvKDs~ilY~-~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~vAd- 197 (625)
T KOG4422|consen 129 REVKDSCILYE-RMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAVAD- 197 (625)
T ss_pred cccchhHHHHH-HHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccHHH-
Confidence 33444555555 4456777777777766665433 333332 2222333333322 2222222 4454444
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006624 180 LSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
-+|+...+ +..+|..+|.++|+-.+.++|.++|++....... .+..+||.+|.+-.-.. ..+++.+|..
T Consensus 198 -L~~E~~PK-----T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~k-v~~~aFN~lI~~~S~~~----~K~Lv~EMis 266 (625)
T KOG4422|consen 198 -LLFETLPK-----TDETVSIMIAGLCKFSSLERARELYKEHRAAKGK-VYREAFNGLIGASSYSV----GKKLVAEMIS 266 (625)
T ss_pred -HHHhhcCC-----CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhe-eeHHhhhhhhhHHHhhc----cHHHHHHHHH
Confidence 34444332 7889999999999999999999999999876554 89999999988765432 3789999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHc----
Q 006624 260 NGLQPTAKIYTTLVSIYFKLGEVEK----ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVED-AYGLFMNMLKE---- 330 (638)
Q Consensus 260 ~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~---- 330 (638)
..+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++...
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK 346 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGK 346 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccC
Confidence 9999999999999999999998765 56788999999999999999999999998888754 55555555542
Q ss_pred CCC----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC----CCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006624 331 GCK----PDIVLINNLINVLGRAGRLEDALKLFNKMEALQ----CKPN---VVTYNTVIKSLFESKAPASEASAWFEKMK 399 (638)
Q Consensus 331 ~~~----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 399 (638)
..+ .|...|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|.....+.- ..+++.|.
T Consensus 347 ~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~-~~~Y~~lV 425 (625)
T KOG4422|consen 347 TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT-LKWYEDLV 425 (625)
T ss_pred cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhc
Confidence 222 245567777888889999999988877664421 1222 22344455555666555544 78888898
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHH
Q 006624 400 ANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARV 479 (638)
Q Consensus 400 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 479 (638)
-+-+-|+..+...++++..-.|.++-.-+++.++..-|...+.....-+...+++.. ..|+...
T Consensus 426 P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k----------------~hp~tp~ 489 (625)
T KOG4422|consen 426 PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK----------------LHPLTPE 489 (625)
T ss_pred cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC----------------CCCCChH
Confidence 888889999999999999999999999999999988774444433333333333322 2222221
Q ss_pred HHHHHHHHHhc-CCHHHHH-HHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHHHHHH
Q 006624 480 YAVMIKHFGKC-GRLSDAV-DLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGC----VPDINSHNII 553 (638)
Q Consensus 480 ~~~li~~~~~~-g~~~~A~-~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~~~~~l 553 (638)
-..+-..+.++ -++.++. ..-.++.+.. -.....+.+.-.+.+.|..++|.+++....+++- .|......-+
T Consensus 490 r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El 567 (625)
T KOG4422|consen 490 REQLQVAFAKCAADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAEL 567 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHH
Confidence 11222222221 1122221 2223344433 3445566677778899999999999998866532 2334444456
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCC
Q 006624 554 LNGLAKSGGPKRAMEIFTKMQHSEI 578 (638)
Q Consensus 554 ~~~~~~~g~~~~A~~~~~~m~~~~~ 578 (638)
++.-.+..++..|...++-|...+.
T Consensus 568 ~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 568 MDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 6666777888889888888876543
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.77 E-value=2.9e-12 Score=124.72 Aligned_cols=495 Identities=12% Similarity=0.055 Sum_probs=360.8
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 006624 109 IQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKS 188 (638)
Q Consensus 109 ~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 188 (638)
.++++.+...- +.++..|...+ ...+.++|..++...++. |+.+...+ .+|++..-++.|..++++..+
T Consensus 366 ~RVlRKALe~i--P~sv~LWKaAV----elE~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe 434 (913)
T KOG0495|consen 366 KRVLRKALEHI--PRSVRLWKAAV----ELEEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKARE 434 (913)
T ss_pred HHHHHHHHHhC--CchHHHHHHHH----hccChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHh
Confidence 45555554332 44666665544 345666788888888774 44444444 445566678889999988877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh---CCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-
Q 006624 189 RKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCN---EGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP- 264 (638)
Q Consensus 189 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~- 264 (638)
. ++.+...|.+-...--.+|+.+...++.++-+. .++...+...|..=...|-..|..--+..+....+..|+.-
T Consensus 435 ~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEee 513 (913)
T KOG0495|consen 435 I-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEE 513 (913)
T ss_pred h-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccc
Confidence 6 455888888777777788888888888776532 12223677777777778888888888888888888777644
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006624 265 -TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLI 343 (638)
Q Consensus 265 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 343 (638)
-..+|+.-...|.+.+.++-|..+|...++.-+. +...|...+..--..|..++-..+|+++...-+ .....|....
T Consensus 514 d~~~tw~~da~~~~k~~~~~carAVya~alqvfp~-k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~a 591 (913)
T KOG0495|consen 514 DRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC-KKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYA 591 (913)
T ss_pred hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHH
Confidence 3567888888999999999999999888876544 666777777777778888999999999988733 3566677777
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006624 344 NVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRV 423 (638)
Q Consensus 344 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 423 (638)
..+...|++..|..++..+.+.... +...|-.-++....+...+.+ ..+|.+.... .|+...|..-+..---.+..
T Consensus 592 ke~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~era-R~llakar~~--sgTeRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 592 KEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERA-RDLLAKARSI--SGTERVWMKSANLERYLDNV 667 (913)
T ss_pred HHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHH-HHHHHHHhcc--CCcchhhHHHhHHHHHhhhH
Confidence 7888889999999999998876533 566777777777777776666 8888777664 56777777777777778899
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 424 EKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEM 503 (638)
Q Consensus 424 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 503 (638)
++|++++++.++. ++.-...|..+.+.+-+.++++.|.+.|..-.+. ++..+..|-.+...--+.|.+-.|..++++.
T Consensus 668 eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 668 EEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRA 745 (913)
T ss_pred HHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 9999999988886 4667778899999999999999999998887775 5566778888888888889999999999988
Q ss_pred HhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH
Q 006624 504 KKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAV 583 (638)
Q Consensus 504 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 583 (638)
.-.+ +.+...|-..|..-.+.|+.+.|..+..++++. ++.+...|.--|...-+.++-......+++. .-|+.
T Consensus 746 rlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dph 818 (913)
T KOG0495|consen 746 RLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPH 818 (913)
T ss_pred HhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCch
Confidence 7765 556788888999999999999999998888875 4445556666666555555544444444433 23555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 006624 584 SYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVD 631 (638)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 631 (638)
..-.+...|....+++.|.++|.+..+.+ +.+.-+|--+..-..++|
T Consensus 819 Vllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 819 VLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHG 865 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhC
Confidence 56666666777777777777777776442 222335655666555555
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=1.5e-15 Score=140.81 Aligned_cols=119 Identities=13% Similarity=0.113 Sum_probs=93.9
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhCCCHHHHHH
Q 006624 106 NVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG----PSVLSEIVNILGKAKMVNKALS 181 (638)
Q Consensus 106 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 181 (638)
.+|+..|.-+.+...|+..-..-..+.+++.+.+++..|++.+...+..-.+.+ ..+.+.+...+.+.|.++.|+.
T Consensus 218 ~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dain 297 (840)
T KOG2003|consen 218 AEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAIN 297 (840)
T ss_pred HHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHh
Confidence 577888888888887777666666788899999999999999998877532333 3456666667899999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006624 182 IFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
.|+...+. .|+..+-..|+-.+..-|+-++..+.|.+|+....
T Consensus 298 sfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~ 340 (840)
T KOG2003|consen 298 SFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPG 340 (840)
T ss_pred hHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCC
Confidence 99999887 57777665666666678999999999999987543
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=1.4e-12 Score=131.99 Aligned_cols=359 Identities=11% Similarity=0.070 Sum_probs=253.2
Q ss_pred cccchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 006624 101 IDVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKAL 180 (638)
Q Consensus 101 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 180 (638)
++++...|..++.-+.++. +.....|..|..+|-+.|+...+...+-.+-... +-|...|..+.....+.|+++.|.
T Consensus 151 arg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHH
Confidence 4688899999999888877 6678899999999999999999888776654433 556788999999999999999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHH----HHHHHHHHHHccCChHHHHHHHHH
Q 006624 181 SIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTV----TYSALISAFGKLGRDISAIRLFDE 256 (638)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~ 256 (638)
-.|.+..+..+. +...+---+..|-+.|+..+|.+-|.++....+. .|.. .-...++.+...++-+.|++.++.
T Consensus 228 ~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~-~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 228 YCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP-VDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc-hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999988543 5555556678888999999999999999987651 2222 223446677778888999999988
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---------------------------CHHHHHHHH
Q 006624 257 MKEN-GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCAL---------------------------TVYTYTELI 308 (638)
Q Consensus 257 m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---------------------------~~~~~~~li 308 (638)
.... +-..+...++.++..|.+...++.|......+......+ +.... -+.
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ 384 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLM 384 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHh
Confidence 8763 223456678899999999999999998888777622222 22221 112
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 006624 309 KGLGRAGRVEDAYGLFMNMLKEG--CKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKA 386 (638)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 386 (638)
-++.+....+....+........ +.-+...|..+..+|...|++.+|+.+|..+......-+...|..+-.++...+.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 23333444444444444444444 3445667888888888888888888888888776655566777777777777777
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------CCCCCCHhhHHHHHHHHHccCCH
Q 006624 387 PASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEE--------KGFPPCPAAYCSLINGYGKAKRY 458 (638)
Q Consensus 387 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~~li~~~~~~g~~ 458 (638)
.+.| .+.++...... +.+...-..|...+.+.|+.++|.+.++.+.. .+.+|+........+.+.+.|+.
T Consensus 465 ~e~A-~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 465 YEEA-IEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred HHHH-HHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 7777 56666666542 22344455666778888888888888887542 23445555555566667777777
Q ss_pred HHHHHHHHH
Q 006624 459 EAANELFLE 467 (638)
Q Consensus 459 ~~A~~~~~~ 467 (638)
++-..+-..
T Consensus 543 E~fi~t~~~ 551 (895)
T KOG2076|consen 543 EEFINTAST 551 (895)
T ss_pred HHHHHHHHH
Confidence 664444333
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=4e-12 Score=119.13 Aligned_cols=450 Identities=12% Similarity=0.068 Sum_probs=329.5
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 006624 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALI 238 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 238 (638)
+...|......-..++++..|..+|++...... .+...|.-.+..-+++.+++.|..++++.+..-| .-...|-..+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP--RVdqlWyKY~ 148 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP--RVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc--hHHHHHHHHH
Confidence 334455555555667788889999999887653 3777888888888999999999999999988654 2234555556
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006624 239 SAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVE 318 (638)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 318 (638)
..--..|++..|.++|++..+ ..|+..+|++.|+.-.+-+..+.|..+++..+-. .|++.+|.....--.+.|.+.
T Consensus 149 ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHH
Confidence 666678999999999999887 4799999999999999999999999999998764 589999999888888999999
Q ss_pred HHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChH---HHHH
Q 006624 319 DAYGLFMNMLKEGC--KPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPN-VVTYNTVIKSLFESKAPA---SEAS 392 (638)
Q Consensus 319 ~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~---~a~~ 392 (638)
.|..+|+..++.-- .-+...+.+....-.++..++.|.-+|+-..+.-.+-. ...|..+...--+-|+.. +++.
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 99999998877411 11233455555555667888999999988877432211 233444433333333322 2211
Q ss_pred ----HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh--hHHHHH-----HHH---HccCCH
Q 006624 393 ----AWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPA--AYCSLI-----NGY---GKAKRY 458 (638)
Q Consensus 393 ----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~li-----~~~---~~~g~~ 458 (638)
--++.+...+ +-|-.+|--.++.-...|+.+...++|+..+.. +||-.. .|...| -++ ....+.
T Consensus 305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 1123333332 456778888888888889999999999999976 455322 111111 111 346789
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHH----HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 006624 459 EAANELFLELKEYCGCSSARVYAV----MIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSL 534 (638)
Q Consensus 459 ~~A~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 534 (638)
+.+.++++..++. +|....++.. ....-.++.++..|.+++..... ..|...++...|..-.+.++++.+..+
T Consensus 383 ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 383 ERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999984 5555555444 34444578899999999988775 468899999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006624 535 LRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEI-KPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGF 613 (638)
Q Consensus 535 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 613 (638)
|++.++-+. -|..+|......-...|+.+.|..+|+-.++... ......|.+.|+-=...|.++.|..+++++++.
T Consensus 460 YEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r-- 536 (677)
T KOG1915|consen 460 YEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR-- 536 (677)
T ss_pred HHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--
Confidence 999999763 3788898888888899999999999999987532 223567888888888999999999999999864
Q ss_pred CCCHhhHHHH
Q 006624 614 EYDQITYSSI 623 (638)
Q Consensus 614 ~p~~~~~~~l 623 (638)
.+...+|-+.
T Consensus 537 t~h~kvWisF 546 (677)
T KOG1915|consen 537 TQHVKVWISF 546 (677)
T ss_pred cccchHHHhH
Confidence 2333345443
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.71 E-value=3.5e-11 Score=117.31 Aligned_cols=454 Identities=12% Similarity=0.032 Sum_probs=228.7
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH----hhCCCCCCHHHHHHHHHHHHhcCCHh
Q 006624 137 ETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQI----KSRKCKPTANTYNSMILMLMQEGYYE 212 (638)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~ 212 (638)
+..-|+.|.+++..+.+. .+.++.+|.+-...--..|+.+...++..+- ...|+..+...|..=...+-..|..-
T Consensus 418 rLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~ 496 (913)
T KOG0495|consen 418 RLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVI 496 (913)
T ss_pred HHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChh
Confidence 334455555555555442 4555555555555555555555555554332 33355555555555555555555555
Q ss_pred HHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 213 KIHELYNEMCNEGNCFPD-TVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 213 ~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (638)
-+..+....+..|....| ..||..-...|.+.+.++-|..+|...++- ++-+...|...+..--..|..+.-..+|++
T Consensus 497 TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqk 575 (913)
T KOG0495|consen 497 TCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQK 575 (913)
T ss_pred hHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 555555555544432122 234555555555555555555555555543 223444555555555555555555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 006624 292 MKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNV 371 (638)
Q Consensus 292 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 371 (638)
....-+. ....|......+-..|++..|..++....+.... +...|-.-+.....+.+++.|..+|.+.... .|+.
T Consensus 576 av~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTe 651 (913)
T KOG0495|consen 576 AVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTE 651 (913)
T ss_pred HHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcc
Confidence 5554222 3444444455555556666666665555554333 4455555555555555666666666555442 2444
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 006624 372 VTYNTVIKSLFESKAPASEASAWFEKMKANGVLPS-PFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLIN 450 (638)
Q Consensus 372 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 450 (638)
..|.--+...-..+..+++ ..++++..+. -|+ ...|..+.+.+-+.++.+.|...|..-.+. +|..+-.|..|..
T Consensus 652 Rv~mKs~~~er~ld~~eeA-~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLak 727 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEA-LRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAK 727 (913)
T ss_pred hhhHHHhHHHHHhhhHHHH-HHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHH
Confidence 4444443333333333333 4444444433 222 234555555556666666666555544433 2444445555555
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHH
Q 006624 451 GYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDD 530 (638)
Q Consensus 451 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 530 (638)
.--+.|++-.|..+++...-. .+.+...|-..|.+-.+.|..+.|..++.+..+. ++.+...|..-|...-+.++-..
T Consensus 728 leEk~~~~~rAR~ildrarlk-NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLK-NPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhc-CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchH
Confidence 555555666666666655544 3345555666666666666666666555555443 23333444444443333333222
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 531 AYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD-AVSYNTILGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 531 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 609 (638)
....+++ +.-|+.....+...+-...++++|.+.|.+.+.. .|| -.+|..+..-+.+.|.-++-.++++...
T Consensus 806 s~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 806 SIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 2222221 2334455555555555555666666666665543 222 2345555555555665555555555554
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=5.3e-11 Score=111.80 Aligned_cols=456 Identities=13% Similarity=0.104 Sum_probs=340.6
Q ss_pred ccchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCCHHHHH
Q 006624 102 DVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGP-SVLSEIVNILGKAKMVNKAL 180 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 180 (638)
+.+...|..+|.-+..-. ..+...|.-.+..=.++.++..|..+++..+.. -|.+ ..|...+-+--..|++..|.
T Consensus 86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHH
Confidence 455678888888776443 446778999999999999999999999999884 3333 45666667777789999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006624 181 SIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
++|++-.+. .|+..+|++.|+.-.+.+..+.|..+|++.+-. +|++.+|-.....-.+.|.+..|.++++..++.
T Consensus 162 qiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~---HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 162 QIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV---HPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee---cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 999998876 899999999999999999999999999999874 399999999999999999999999999998864
Q ss_pred -CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC---HHHHHH-----HHHHHHH
Q 006624 261 -GL-QPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT-VYTYTELIKGLGRAGR---VEDAYG-----LFMNMLK 329 (638)
Q Consensus 261 -g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~---~~~A~~-----~~~~~~~ 329 (638)
|- ..+...+.+....-.++..++.|.-+|+-.++.=+.-. ...|..+...--+-|+ +++++- -|+.+++
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 21 11344566666666678889999999988887633211 3334444333333444 444432 3455555
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHHH--------HHhcCChHHHHHHHHHHHH
Q 006624 330 EGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNV--VTYNTVIKS--------LFESKAPASEASAWFEKMK 399 (638)
Q Consensus 330 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~ll~~--------~~~~~~~~~a~~~~~~~~~ 399 (638)
.++. |-.+|-..+..-...|+.+...++|+.+.. +++|-. ..|...|.. -....+.... .++++...
T Consensus 317 ~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIa-nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ert-r~vyq~~l 393 (677)
T KOG1915|consen 317 KNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIA-NVPPASEKRYWRRYIYLWINYALYEELEAEDVERT-RQVYQACL 393 (677)
T ss_pred hCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHc-cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHH
Confidence 5443 777888888888889999999999999987 344422 123222221 1233444444 77777777
Q ss_pred hCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 006624 400 ANGVLPSPFTYSILIDGFC----KTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCS 475 (638)
Q Consensus 400 ~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 475 (638)
+ -++...+||..+.-.|+ ++.++..|.+++...+.. .|-..++...|..-.+.+++|.+..+++..++. .|.
T Consensus 394 ~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEkfle~-~Pe 469 (677)
T KOG1915|consen 394 D-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEKFLEF-SPE 469 (677)
T ss_pred h-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc-ChH
Confidence 6 35667788877766655 578899999999888754 788899999999999999999999999999997 456
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006624 476 SARVYAVMIKHFGKCGRLSDAVDLFNEMKKLR-CKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIIL 554 (638)
Q Consensus 476 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 554 (638)
+..+|......-...|+.+.|..+|+-..+.. .......|.+.|+.-...|.+++|..+|+++++. .+...+|-++.
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA 547 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFA 547 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHH
Confidence 77888888888888999999999999988742 1223556777777778899999999999999985 34444666555
Q ss_pred HHHH-----hcC-----------CHHHHHHHHHHhhh
Q 006624 555 NGLA-----KSG-----------GPKRAMEIFTKMQH 575 (638)
Q Consensus 555 ~~~~-----~~g-----------~~~~A~~~~~~m~~ 575 (638)
.--. +.| ....|..+|++...
T Consensus 548 ~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 548 KFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 4332 333 56678888888754
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=8.9e-12 Score=116.71 Aligned_cols=383 Identities=14% Similarity=0.078 Sum_probs=278.7
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--H
Q 006624 229 PDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYT--E 306 (638)
Q Consensus 229 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~--~ 306 (638)
.|...+-.....+-+.|..+.|+..|...... .+-.-.+|..|.... .+.+.+ ..... +...|...+. -
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~----~~l~~-~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEIL----SILVV-GLPSDMHWMKKFF 232 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHH----HHHHh-cCcccchHHHHHH
Confidence 55555555666667788888888888887764 223334444443332 222222 22221 1111222222 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHhc
Q 006624 307 LIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQC--KPNVVTYNTVIKSLFES 384 (638)
Q Consensus 307 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~ 384 (638)
+..++-...+.+++.+-.+.....|.+-+...-+....+.....|+|+|..+|+++.+... --|..+|..++-..-..
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 3456666678889999899998888876766666667777788999999999999988632 12556666665332221
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHH
Q 006624 385 KAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANEL 464 (638)
Q Consensus 385 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 464 (638)
.. ..++.+-...--+-.+.|..++.+-|.-.++.++|...|+...+.+ |....+|+.+..-|....+...|.+.
T Consensus 313 sk-----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 313 SK-----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HH-----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 11 1111111111112345677888899999999999999999999987 77788999999999999999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 006624 465 FLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCV 544 (638)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 544 (638)
++.+.+. .+.|-..|-.|.++|.-.+.+.-|+-.|++..+.. +.|...|.+|..+|.+.++.++|+..|++....|-
T Consensus 387 YRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d- 463 (559)
T KOG1155|consen 387 YRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD- 463 (559)
T ss_pred HHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-
Confidence 9999997 66789999999999999999999999999998864 55789999999999999999999999999998763
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 006624 545 PDINSHNIILNGLAKSGGPKRAMEIFTKMQH----SEIKPD--AVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQI 618 (638)
Q Consensus 545 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 618 (638)
.+...+..|...+-+.++.++|..+|++-++ .|...+ .....-|..-+.+.+++++|..+....... .+...
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~e 541 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECE 541 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHH
Confidence 3678899999999999999999999998775 233322 222233666778899999999887777643 66777
Q ss_pred hHHHHHHHHhccC
Q 006624 619 TYSSILEAVGKVD 631 (638)
Q Consensus 619 ~~~~l~~~~~~~g 631 (638)
--+.|++.+.+..
T Consensus 542 eak~LlReir~~~ 554 (559)
T KOG1155|consen 542 EAKALLREIRKIQ 554 (559)
T ss_pred HHHHHHHHHHHhc
Confidence 7788888776654
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.8e-11 Score=113.43 Aligned_cols=165 Identities=15% Similarity=0.107 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006624 407 PFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKH 486 (638)
Q Consensus 407 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 486 (638)
...|+.+.+-|....+...|++-++...+.+ |.|-.+|..|.++|.-.+-..-|+-.|+++.+. -|.|...|.+|..+
T Consensus 364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~C 441 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGEC 441 (559)
T ss_pred hHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHH
Confidence 4556667777788888888888888888876 778888888888888888888888888888875 56778888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhc
Q 006624 487 FGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED----GCVPD--INSHNIILNGLAKS 560 (638)
Q Consensus 487 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~ 560 (638)
|.+.++.++|+..|......| ..+...+..|...|-+.++.++|...|++-++. |...+ ...-.-|..-+.+.
T Consensus 442 Y~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~ 520 (559)
T KOG1155|consen 442 YEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKM 520 (559)
T ss_pred HHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhh
Confidence 888888888888888888765 235577888888888888888888888877652 32222 11222244555677
Q ss_pred CCHHHHHHHHHHhh
Q 006624 561 GGPKRAMEIFTKMQ 574 (638)
Q Consensus 561 g~~~~A~~~~~~m~ 574 (638)
+++++|..+.....
T Consensus 521 ~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 521 KDFDEASYYATLVL 534 (559)
T ss_pred cchHHHHHHHHHHh
Confidence 77777766554443
No 39
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=6.9e-11 Score=113.74 Aligned_cols=288 Identities=11% Similarity=0.061 Sum_probs=219.1
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006624 333 KPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSI 412 (638)
Q Consensus 333 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 412 (638)
.-+......-..-+...+++.+..++.+...+.. ++....+-.-|..+...|+..+- ..+=.++.+. .+....+|-+
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~L-f~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKL-FLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchH-HHHHHHHHHh-CCCCCcchhh
Confidence 3455666666777788889999999999887743 34555566667777777776554 4444455544 3556788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 006624 413 LIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGR 492 (638)
Q Consensus 413 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 492 (638)
+.--|...|+.++|.+.|.+....+ +.-...|..+...|+-.|..|+|...+..+.+. .+-...-+--+.--|.+.+.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhcc
Confidence 9988889999999999999887765 455678899999999999999999999888774 22222223334556778899
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCC----CCHHHHHHHHHHHHhcCCHHHH
Q 006624 493 LSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED--GCV----PDINSHNIILNGLAKSGGPKRA 566 (638)
Q Consensus 493 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----p~~~~~~~l~~~~~~~g~~~~A 566 (638)
.+-|.++|.+..... +-|...++-+.-.....+.+.+|..+|+..+.. ... --..+++.|+.+|.+.+++++|
T Consensus 396 ~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999999887753 456777777777777789999999999988732 011 1245688899999999999999
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 006624 567 MEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGK 629 (638)
Q Consensus 567 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 629 (638)
+..+++..... +-|..++.++.-.|...|+++.|.+.|.+.+ .+.||..+.+.++..+..
T Consensus 475 I~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 475 IDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHH
Confidence 99999988753 3478889999999999999999999999988 778999888888876543
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=5.5e-12 Score=126.12 Aligned_cols=288 Identities=14% Similarity=0.119 Sum_probs=142.4
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHH
Q 006624 208 EGYYEKIHELYNEMCNEGNCFPDTVT-YSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYT--TLVSIYFKLGEVEK 284 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~ 284 (638)
.|++++|.+......+.. ++... |.....+..+.|+++.|.+.++++.+. .|+..... .....+...|++++
T Consensus 97 eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 677777776666654432 12222 323334446667777777777777654 34433222 33556666777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHccCCHHHHHHHHHHHH
Q 006624 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLI-NVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~ 363 (638)
|.+.++++.+.++. +...+..+...|.+.|++++|.+++..+.+.+..+ ......+- .++
T Consensus 172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~----------------- 232 (398)
T PRK10747 172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD-EEHRAMLEQQAW----------------- 232 (398)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH-----------------
Confidence 77777776666544 55666666666666677777776666666654432 11111000 000
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 006624 364 ALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPA 443 (638)
Q Consensus 364 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 443 (638)
..++.......+ .+....+++.+... .+.++.....+...+...|+.++|..++++..+. ++++.
T Consensus 233 -----------~~l~~~~~~~~~-~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~ 297 (398)
T PRK10747 233 -----------IGLMDQAMADQG-SEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER 297 (398)
T ss_pred -----------HHHHHHHHHhcC-HHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH
Confidence 000000000000 01111111221111 1234455555666666666666666666666553 33332
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 006624 444 AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMV 523 (638)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 523 (638)
.. ++.+....++.+++.+..+...+. .+.|...+..+...+.+.+++++|.+.|+...+. .|+..++..+...+.
T Consensus 298 l~--~l~~~l~~~~~~~al~~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~ 372 (398)
T PRK10747 298 LV--LLIPRLKTNNPEQLEKVLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALD 372 (398)
T ss_pred HH--HHHhhccCCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHH
Confidence 11 122222335555555555555543 3344444555555555555555555555555543 355555555555555
Q ss_pred HcCCHHHHHHHHHHHH
Q 006624 524 RAGMIDDAYSLLRRME 539 (638)
Q Consensus 524 ~~g~~~~A~~~~~~~~ 539 (638)
+.|+.++|.+++++..
T Consensus 373 ~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 373 RLHKPEEAAAMRRDGL 388 (398)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555555443
No 41
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=4.8e-12 Score=113.05 Aligned_cols=300 Identities=13% Similarity=0.122 Sum_probs=222.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCC-CCC--CHHHHHHHH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRK-CKP--TANTYNSMI 202 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~ 202 (638)
..|..-++.+. +++.+.|.++|.+|.+.. +.+..+.-++.+.|.+.|.+++|+++...+.++. ... ...+...|.
T Consensus 37 r~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~ 114 (389)
T COG2956 37 RDYVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLG 114 (389)
T ss_pred HHHHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 34555555443 578899999999998853 4556777889999999999999999999988761 111 123455677
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHh
Q 006624 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPT----AKIYTTLVSIYFK 278 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~ 278 (638)
.-|...|-+++|.++|..+.+.+. --......|+..|-+..++++|+++-+++.+.|-++. ...|.-|...+..
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~e--fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEGE--FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcchh--hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 888899999999999999988654 4566788899999999999999999999888765443 2346667777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 006624 279 LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKL 358 (638)
Q Consensus 279 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 358 (638)
..+++.|..++.+..+.+.+ .+..-..+.+.....|+++.|.+.++...+.++.--..+...|..+|.+.|+.++....
T Consensus 193 ~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 193 SSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 88899999999999887655 66666777888999999999999999999986665567788899999999999999999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 006624 359 FNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKT---NRVEKAHLLLEEMEE 435 (638)
Q Consensus 359 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~ 435 (638)
+..+.+.. +....-..+-.......+...+...+.+++.. .|+...+..+++..... |...+-+.+++.|..
T Consensus 272 L~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 272 LRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 99887754 34444444444444445555553444444444 58888888888765433 345555566666654
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.3e-11 Score=116.28 Aligned_cols=423 Identities=13% Similarity=0.025 Sum_probs=241.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006624 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG-PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
.+....+-+.++|.+++|++.|...+. +.|+ +.-|.....+|...|++++..+.-.+..+.++. -+..+..-..++
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAH 193 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHH
Confidence 455566778889999999999999988 5666 777888888889999999999988888877433 345666677777
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-CC--CCCCHHHHHHHHHHHHhcCCH
Q 006624 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE-NG--LQPTAKIYTTLVSIYFKLGEV 282 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g--~~~~~~~~~~li~~~~~~g~~ 282 (638)
-+.|++++|+.-..-..-.+.. .|..+--.+=+.+-+ .|....++-.+ .+ +-|+.....+....+-..-
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F-~n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~-- 265 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGF-QNASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP-- 265 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhc-ccchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc--
Confidence 7888888876544333222221 222211111111111 12222222222 22 2233333333222221100
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHc---CCCC---C------HHHHHHHHHHHHcc
Q 006624 283 EKALGLVQEMKGKGCALTVYTYTELIKGLGR-AGRVEDAYGLFMNMLKE---GCKP---D------IVLINNLINVLGRA 349 (638)
Q Consensus 283 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~---~~~p---~------~~~~~~l~~~~~~~ 349 (638)
...+...+..-|...-..+-..+.. ...+..|...+.+-... .... | ..+...-...+.-.
T Consensus 266 ------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~ 339 (606)
T KOG0547|consen 266 ------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK 339 (606)
T ss_pred ------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc
Confidence 0000000000011000000000000 11233333333222111 0000 1 11122222223445
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006624 350 GRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLL 429 (638)
Q Consensus 350 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 429 (638)
|+.-.|..-|+...+....++.. |-.+-..|....+..+. +..|....+-+ +-|+.+|..-.+.+.-.+++++|..=
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~-~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKM-WKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred CCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHH-HHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 77778888888877755433331 44444445555555444 67777766653 33556676667777777888888888
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006624 430 LEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCK 509 (638)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 509 (638)
|++.++.. |.+...|..+.-+..+.++++++...|++.++. .|..+.+|+.....+..++++++|.+.|+...+..
T Consensus 417 F~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE-- 492 (606)
T KOG0547|consen 417 FQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE-- 492 (606)
T ss_pred HHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc--
Confidence 88888775 666677777777777888888888888888876 66677888888888888888888888888877642
Q ss_pred CC-------HhhH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006624 510 PD-------VYTY--NALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 510 p~-------~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
|+ ..++ ..++. +--.+++..|..++.++++...+ ....|..|...-.+.|+.++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 32 1111 11111 11347888888888888875322 355677788888888888888888887653
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=5.8e-12 Score=126.71 Aligned_cols=292 Identities=14% Similarity=0.065 Sum_probs=155.9
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHH
Q 006624 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTA--KIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~ 283 (638)
...|+++.|.+.+.+..+..+ .....+-....+..+.|+.+.|.+.+++..+.. |+. .........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~--~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAA--EPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH
Confidence 457888888888877766542 223444455666777788888888888776643 333 33444567777778888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHccCCHHHHHHHHHHH
Q 006624 284 KALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLIN-VLGRAGRLEDALKLFNKM 362 (638)
Q Consensus 284 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~ 362 (638)
.|.+.++.+.+..+. +...+..+...+...|++++|.+.++.+.+.+.. +...+..+-. ++ .+ .++..
T Consensus 171 ~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~--~~-------~l~~~ 239 (409)
T TIGR00540 171 AARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE--IG-------LLDEA 239 (409)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH--HH-------HHHHH
Confidence 888888777777654 5666777777777777777777777777776543 2222211111 00 00 00000
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006624 363 EALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANG---VLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFP 439 (638)
Q Consensus 363 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 439 (638)
...+. ...+..+.... .+.+...+..+...+...|+.++|.+++++..+.. +
T Consensus 240 -----------------------~~~~~-~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-p 294 (409)
T TIGR00540 240 -----------------------MADEG-IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-G 294 (409)
T ss_pred -----------------------HHhcC-HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-C
Confidence 00000 01111111111 11356667777777888888888888888877764 2
Q ss_pred CCHhhHHHHHH--HHHccCCHHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 006624 440 PCPAAYCSLIN--GYGKAKRYEAANELFLELKEYCGCSSA--RVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTY 515 (638)
Q Consensus 440 ~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 515 (638)
.+......++. .....++.+.+.+.++...+. .+.|. .....+...+.+.|++++|.+.|+........|+...+
T Consensus 295 d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~ 373 (409)
T TIGR00540 295 DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL 373 (409)
T ss_pred CcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH
Confidence 22211100111 112234455555555554443 22333 34444555555555555555555532222223444444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 006624 516 NALMSGMVRAGMIDDAYSLLRRM 538 (638)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~~ 538 (638)
..+...+.+.|+.++|.++|++.
T Consensus 374 ~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 374 AMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555555555555555555543
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=2.3e-11 Score=114.67 Aligned_cols=419 Identities=15% Similarity=0.081 Sum_probs=264.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc
Q 006624 166 IVNILGKAKMVNKALSIFYQIKSRKCKPT-ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL 244 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (638)
..+-|.+.|++++|++.|.+.++. .|+ +.-|.....+|...|+++++.+.-.+.++.++ .-+..+..-.+++-+.
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P--~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNP--DYVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCc--HHHHHHHHHHHHHHhh
Confidence 347788999999999999999987 566 78888899999999999999999999988764 3455666677788888
Q ss_pred CChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 006624 245 GRDISAIRLFDEMKE-NGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKG-KG--CALTVYTYTELIKGLGRAGRVEDA 320 (638)
Q Consensus 245 g~~~~A~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~--~~~~~~~~~~li~~~~~~g~~~~A 320 (638)
|++++|+.=..-..= .|+. |..+ ..+++-..+. .|....++-.. .+ +-|+.....+....+-..-.
T Consensus 197 g~~~eal~D~tv~ci~~~F~-n~s~-~~~~eR~Lkk----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~---- 266 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQ-NASI-EPMAERVLKK----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK---- 266 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcc-cchh-HHHHHHHHHH----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc----
Confidence 888887653322211 1111 1111 1111111111 12222222222 22 22444333333332211000
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHC-CCCCCHh---------HHHHHHH--HHHhcCCh
Q 006624 321 YGLFMNMLKEGCKPDIVLINNLINVLGRA-GRLEDALKLFNKMEAL-QCKPNVV---------TYNTVIK--SLFESKAP 387 (638)
Q Consensus 321 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~-~~~p~~~---------~~~~ll~--~~~~~~~~ 387 (638)
..+...+...|...-..+-..+... ..+..|...+.+-... ...++.. .-..++. ..+-.|+.
T Consensus 267 ----~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~ 342 (606)
T KOG0547|consen 267 ----PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDS 342 (606)
T ss_pred ----ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCc
Confidence 0000000000111111111111110 1122222222211000 0001100 1111111 12345666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 006624 388 ASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLE 467 (638)
Q Consensus 388 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 467 (638)
..+ ..-|+..+.....++. .|-.+...|.+.++.++....|++....+ +.++.+|..-.+.+.-.+++++|..-|++
T Consensus 343 ~~a-~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 343 LGA-QEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred hhh-hhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 666 7777888776433332 37777788999999999999999999987 88889999999999999999999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---
Q 006624 468 LKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCV--- 544 (638)
Q Consensus 468 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--- 544 (638)
.... .+.+...|-.+..+..+.+++++++..|++.++. ++.-...|+.....+...+++++|.+.|+..++....
T Consensus 420 ai~L-~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~ 497 (606)
T KOG0547|consen 420 AISL-DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL 497 (606)
T ss_pred Hhhc-ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc
Confidence 9986 4456777888888888999999999999999876 4555788999999999999999999999999974211
Q ss_pred --CCHHHH--HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 545 --PDINSH--NIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 545 --p~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 609 (638)
.+...+ -.++. +.-.+++..|.+++++..+...+ ....|.+|...-.+.|+.++|+++|++..
T Consensus 498 ~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 498 IIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 122211 11221 12348999999999999965322 35678899999999999999999999865
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.59 E-value=1.2e-11 Score=124.35 Aligned_cols=290 Identities=11% Similarity=0.017 Sum_probs=138.4
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHH
Q 006624 172 KAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAI 251 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 251 (638)
..|+++.|.+.+.+..+.... ....+-....+..+.|++++|.+.+++..+..+. ++..........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~-~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN-DNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-CchHHHHHHHHHHHHCCCHHHHH
Confidence 345566666655555444211 1222333345555556666666666665543321 11122233355555566666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHH---HHHHhcCCHHHHHHHHHHH
Q 006624 252 RLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYT-ELI---KGLGRAGRVEDAYGLFMNM 327 (638)
Q Consensus 252 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~li---~~~~~~g~~~~A~~~~~~~ 327 (638)
+.++.+.+.. +-+..++..+...+...|++++|.+.+..+.+.+.. +...+. .-. ......+..+++.+.+..+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6666665543 224455556666666666666666666666655433 222221 111 1112222222233344444
Q ss_pred HHcCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHH--HHHHHH-HHhcCChHHHHHHHHHHHHhC
Q 006624 328 LKEGCK---PDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTY--NTVIKS-LFESKAPASEASAWFEKMKAN 401 (638)
Q Consensus 328 ~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~ll~~-~~~~~~~~~a~~~~~~~~~~~ 401 (638)
.+..+. .+...+..++..+...|+.++|.+++++..+.. ||.... ..+... ....++. ..+...++...+.
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~-~~~~~~~e~~lk~ 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDN-EKLEKLIEKQAKN 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCCh-HHHHHHHHHHHHh
Confidence 433221 266667777777777777777777777776643 333210 111111 1111222 2223333333332
Q ss_pred CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 006624 402 GVLPSP--FTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELK 469 (638)
Q Consensus 402 ~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 469 (638)
.+-|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 329 -~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 329 -VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred -CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11122 33445555666666666666666632222224555555566666666666666666665543
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=1.2e-14 Score=138.75 Aligned_cols=158 Identities=15% Similarity=0.163 Sum_probs=60.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 006624 413 LIDGFCKTNRVEKAHLLLEEMEEKG-FPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCG 491 (638)
Q Consensus 413 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 491 (638)
++..+.+.++++++..+++.+.... .+.++..|..+...+.+.|+.++|.+.++++.+. .|.|....+.++..+...|
T Consensus 116 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-~P~~~~~~~~l~~~li~~~ 194 (280)
T PF13429_consen 116 ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL-DPDDPDARNALAWLLIDMG 194 (280)
T ss_dssp --H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHCC
Confidence 3333444444444444444433211 1233344444444444444444444444444443 2223444444444444455
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 492 RLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFT 571 (638)
Q Consensus 492 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 571 (638)
+.+++..+++...+.. +.|...+..+..++...|+.++|+..|++..+.. +.|......+..++...|+.++|.++.+
T Consensus 195 ~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 195 DYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-------------
T ss_pred ChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 5554444444443321 2233344455555555555555555555555431 2244455555555555555555555554
Q ss_pred Hh
Q 006624 572 KM 573 (638)
Q Consensus 572 ~m 573 (638)
+.
T Consensus 273 ~~ 274 (280)
T PF13429_consen 273 QA 274 (280)
T ss_dssp --
T ss_pred cc
Confidence 43
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=2.4e-11 Score=121.61 Aligned_cols=283 Identities=11% Similarity=0.034 Sum_probs=145.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHH--HHHHHHHHhcCCHhHH
Q 006624 138 TRMIGVMWKSIQDMVRSTCVMGPSVLSEI-VNILGKAKMVNKALSIFYQIKSRKCKPTANTY--NSMILMLMQEGYYEKI 214 (638)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A 214 (638)
.|+++.|.+.+....+. .+++..+..+ ..+..+.|+++.|...|.++.+. .|+.... ......+...|++++|
T Consensus 97 eGd~~~A~k~l~~~~~~--~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH--AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 46666666655554332 2223333333 33335666666666666666554 2232211 1224555666666666
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHH
Q 006624 215 HELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTA-------KIYTTLVSIYFKLGEVEKALG 287 (638)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~ 287 (638)
.+.++++.+..+ .+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 173 l~~l~~~~~~~P--~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 173 RHGVDKLLEVAP--RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHhcCC--CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 666666666554 34555566666666666666666666666655432111 111222222222223333333
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 006624 288 LVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQC 367 (638)
Q Consensus 288 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 367 (638)
+++.+...- +.++.....+...+...|+.++|..++++..+. .||.... ++.+....++.+++.+..+.
T Consensus 251 ~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~------ 319 (398)
T PRK10747 251 WWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQ------ 319 (398)
T ss_pred HHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHH------
Confidence 333332211 123444444444444444444444444444442 1222111 11122223444444444443
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 006624 368 KPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCS 447 (638)
Q Consensus 368 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 447 (638)
..+.. +-|...+..+...+.+.+++++|.+.|+.+.+. .|+...+..
T Consensus 320 ------------------------------~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~ 366 (398)
T PRK10747 320 ------------------------------QIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAW 366 (398)
T ss_pred ------------------------------HHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHH
Confidence 33321 334555667777777888888888888877765 577777777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH
Q 006624 448 LINGYGKAKRYEAANELFLELKE 470 (638)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~~~~ 470 (638)
+...+.+.|+.++|.+++++...
T Consensus 367 La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 367 LADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 77888888888888887777654
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=1.9e-14 Score=137.47 Aligned_cols=262 Identities=16% Similarity=0.206 Sum_probs=84.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc
Q 006624 165 EIVNILGKAKMVNKALSIFYQIKSRK-CKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243 (638)
Q Consensus 165 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (638)
.+...+.+.|++++|++++.+..... ...+..-|..+.......++++.|.+.|+++...+. -+...+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~--~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK--ANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccc-cc
Confidence 44555666666666666664433332 122444444455555556666666666666666543 234445555555 56
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006624 244 LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKG-CALTVYTYTELIKGLGRAGRVEDAYG 322 (638)
Q Consensus 244 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~ 322 (638)
.+++++|.++++...+.. ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++
T Consensus 90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666555432 445555666666666666666666666655432 23355566666666666777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 006624 323 LFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANG 402 (638)
Q Consensus 323 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 402 (638)
.+++.++..+. |....+.++..+...|+.+++.++++...+..
T Consensus 168 ~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~------------------------------------ 210 (280)
T PF13429_consen 168 DYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA------------------------------------ 210 (280)
T ss_dssp HHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-------------------------------------
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC------------------------------------
Confidence 77666665332 45566666666666666666666655543311
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 403 VLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKE 470 (638)
Q Consensus 403 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (638)
+.|+..+..+..++...|+.++|+.++++..+.. +.|+.....+.+++...|+.++|.++..++.+
T Consensus 211 -~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 211 -PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred -cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 2233455666777777788888888888777754 66777777777778788887777777766543
No 49
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.9e-10 Score=110.78 Aligned_cols=284 Identities=14% Similarity=0.081 Sum_probs=194.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 006624 300 TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIK 379 (638)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 379 (638)
+......-.+-+...+++.+...+++...+..+ +....+..-|.++...|+..+-..+=.++.+.- +....+|-.+--
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 445555555666677777777777777776532 244444444556666776666555555555533 224556666655
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHH
Q 006624 380 SLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYE 459 (638)
Q Consensus 380 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 459 (638)
-|...++..+| +.+|.+...-.. .=...|-.....|.-.|.-++|+..+..+-+.- +-..--+.-+.--|.+.++++
T Consensus 321 YYl~i~k~seA-Rry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 321 YYLMIGKYSEA-RRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHhcCcHHH-HHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHH
Confidence 55566666666 666666554321 113467777788888888888888887776541 222223334455677888888
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C--CCCCHhhHHHHHHHHHHcCCHHHHHH
Q 006624 460 AANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL----R--CKPDVYTYNALMSGMVRAGMIDDAYS 533 (638)
Q Consensus 460 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 533 (638)
-|.+.|.++... .|.|+.+.+.+.-.....+.+.+|...|+..... + ..-...+++.|.++|.+.+++++|+.
T Consensus 398 LAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 888888888876 5567778888887777788888888888876521 0 11245678888999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 006624 534 LLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCL 592 (638)
Q Consensus 534 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 592 (638)
.+++.+... +-|..++.++.-.|...|+++.|.+.|.+.. .+.||..+-..++..+
T Consensus 477 ~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 477 YYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 999988863 4478888888888999999999999999887 5678876666666543
No 50
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=1.9e-10 Score=104.08 Aligned_cols=453 Identities=12% Similarity=0.073 Sum_probs=265.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 006624 132 IRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYY 211 (638)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 211 (638)
+.-+..++++..|+.+++--...+-.....+-.-+..++...|++++|...|.-+... -.++...+-.+...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 3444556667777776665443322222223333455667788888888888877664 345666666677777777888
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 212 EKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 212 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (638)
.+|..+-.+.. .+...-..+++..-+.|+-++-..+.+.+.+ ...---+|.......-.+.+|++++..
T Consensus 108 ~eA~~~~~ka~------k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 108 IEAKSIAEKAP------KTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHhhCC------CChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 88877755542 2333344555666677777777777766654 223344566666666678888888888
Q ss_pred HHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 006624 292 MKGKGCALTVYTYTE-LIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPN 370 (638)
Q Consensus 292 m~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 370 (638)
....+ |+-...|. +.-+|.+..-++-+.++++-.++. ++.++...|..+....+.=.-..|..-.+.+.+.+-.
T Consensus 177 vL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-- 251 (557)
T KOG3785|consen 177 VLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-- 251 (557)
T ss_pred HHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc--
Confidence 87753 23334443 334566777777777777777665 2223444454444333332222233333333322110
Q ss_pred HhHHHHHHHHHHhcC-----ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 006624 371 VVTYNTVIKSLFESK-----APASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAY 445 (638)
Q Consensus 371 ~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 445 (638)
. --.+.-+++.+ +-+.+ .+++-.+.+. .| ..-..++--|.+.+++.+|..+.+++. |.++.-|
T Consensus 252 ~---~~f~~~l~rHNLVvFrngEgA-LqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~Ey 319 (557)
T KOG3785|consen 252 E---YPFIEYLCRHNLVVFRNGEGA-LQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEY 319 (557)
T ss_pred c---chhHHHHHHcCeEEEeCCccH-HHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcC----CCChHHH
Confidence 0 01112222221 11122 3333333221 12 233345566888999999998877664 3333333
Q ss_pred HHHHHHHHcc-------CCHHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 006624 446 CSLINGYGKA-------KRYEAANELFLELKEYCGCSSA-RVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNA 517 (638)
Q Consensus 446 ~~li~~~~~~-------g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 517 (638)
..-.-.+... ....-|...|+..-+.+...|. .--..+..++.-..++++.+..++.+..--...|.+.+|
T Consensus 320 ilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N- 398 (557)
T KOG3785|consen 320 ILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN- 398 (557)
T ss_pred HHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-
Confidence 2222223333 3455666666665554444332 223455666666778889998888887765455565555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhc
Q 006624 518 LMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSH-NIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAV-SYNTILGCLSRA 595 (638)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~ 595 (638)
+..+++..|++.+|+++|-+.....++ |..+| ..|.++|.+.++++-|++++-++-. ..+.. ....+..-|.+.
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKA 474 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHH
Confidence 678888999999999999877765555 45555 4566788899999999888776643 22333 344556778888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhH
Q 006624 596 GMFEEAARLMKDMNAKGFEYDQITY 620 (638)
Q Consensus 596 g~~~~A~~~~~~m~~~~~~p~~~~~ 620 (638)
+.+=-|.+.|+.+.. ..|++.-|
T Consensus 475 ~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 475 NEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HHHHHHHHhhhHHHc--cCCCcccc
Confidence 888888888887774 45666544
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=2.5e-12 Score=126.11 Aligned_cols=284 Identities=12% Similarity=0.035 Sum_probs=205.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHhcCChHHHHHHH
Q 006624 317 VEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQC--KPNVVTYNTVIKSLFESKAPASEASAW 394 (638)
Q Consensus 317 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~ 394 (638)
..+|+..|...... +.-...+...+..+|...+++++|.++|+.+.+... .-+...|.+.+--+- +..+- -.+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~v~L-s~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DEVAL-SYL 409 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hhHHH-HHH
Confidence 45566666663332 222234445556666666666666666666654321 113344444442221 11111 111
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 006624 395 FEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGC 474 (638)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 474 (638)
-+.+.+. -+-.+.+|.++.++|.-+++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+.++.. .+
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-DP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC-Cc
Confidence 1222322 24467899999999999999999999999999886 668899999999999999999999999999874 23
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006624 475 SSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIIL 554 (638)
Q Consensus 475 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 554 (638)
.+-..|-.+...|.++++++.|.-.|++..+.+ +-+.+....+...+.+.|+.++|+.+++++.....+ |+..--..+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHH
Confidence 344455567888999999999999999999865 345667777788888999999999999999986544 444444566
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006624 555 NGLAKSGGPKRAMEIFTKMQHSEIKPD-AVSYNTILGCLSRAGMFEEAARLMKDMNAKG 612 (638)
Q Consensus 555 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 612 (638)
..+...+++++|+..++++++. .|+ ...|..+...|.+.|+.+.|+.-|--|.+..
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 7788899999999999999964 555 5678889999999999999999998888543
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.54 E-value=1.5e-10 Score=106.99 Aligned_cols=286 Identities=14% Similarity=0.134 Sum_probs=155.8
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006624 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALG 287 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 287 (638)
.|+|.+|..+..+..+.+. .-...|..-..+.-+.|+.+.+-+++.+.-+.--.++...+-+........|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e--~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE--QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc--chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 5777777777777655543 33445555556666667777777777776665323455556666666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHccCCHHHHHHHHH
Q 006624 288 LVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIV-------LINNLINVLGRAGRLEDALKLFN 360 (638)
Q Consensus 288 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-------~~~~l~~~~~~~g~~~~A~~~~~ 360 (638)
-+.++.+.++. +........++|.+.|++.+...++..+.+.|.--|.. +|+.+++-....+..+.-
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL----- 248 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGL----- 248 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHH-----
Confidence 66666666554 55566666666666666666666666666665543332 122222221111111111
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006624 361 KMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPP 440 (638)
Q Consensus 361 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 440 (638)
..+++..... .+-++..-..++.-+.+.|+.++|.++.++..+++..+
T Consensus 249 -------------------------------~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~ 296 (400)
T COG3071 249 -------------------------------KTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP 296 (400)
T ss_pred -------------------------------HHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh
Confidence 1122222111 12234444555566666677777777766666665444
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 006624 441 CPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMS 520 (638)
Q Consensus 441 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 520 (638)
. .. ..-.+.+-++.+.-.+..+...+. .+.++..+..|...|.+.+.+.+|...|+...+. .|+..+|+.+.+
T Consensus 297 ~---L~-~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~ 369 (400)
T COG3071 297 R---LC-RLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELAD 369 (400)
T ss_pred h---HH-HHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHH
Confidence 3 11 112233445555555555554443 3334455556666666666666666666655543 356666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 006624 521 GMVRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~~~ 540 (638)
++.+.|+..+|.++.++...
T Consensus 370 ~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 370 ALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHcCChHHHHHHHHHHHH
Confidence 66666666666666555543
No 53
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.53 E-value=1.4e-08 Score=99.41 Aligned_cols=400 Identities=13% Similarity=0.169 Sum_probs=197.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCC------CCCCHHHHH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRK------CKPTANTYN 199 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~ 199 (638)
..|...++-....+.+.-+.+++++.++ .+|..-+-.+..+.+.+++++|.+.+..+.... .+.+-..|.
T Consensus 139 rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~ 214 (835)
T KOG2047|consen 139 RIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL 214 (835)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH
Confidence 3444444444444444444444444433 122234444455555555555555554443221 122233333
Q ss_pred HHHHHHHhcCCHh---HHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006624 200 SMILMLMQEGYYE---KIHELYNEMCNEGNCFPD--TVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVS 274 (638)
Q Consensus 200 ~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 274 (638)
-+-+...++-+.- ..-+++..+.... +| ...|.+|.+.|.+.|.+++|..++++.+.. ..++.-|..+.+
T Consensus 215 elcdlis~~p~~~~slnvdaiiR~gi~rf---tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd 289 (835)
T KOG2047|consen 215 ELCDLISQNPDKVQSLNVDAIIRGGIRRF---TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFD 289 (835)
T ss_pred HHHHHHHhCcchhcccCHHHHHHhhcccC---cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHH
Confidence 3333333322211 1122223332221 22 234788888888888888888888887764 223334444444
Q ss_pred HHHhc----------------CC------HHHHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHHhcCCHHHHH
Q 006624 275 IYFKL----------------GE------VEKALGLVQEMKGKGC-----------ALTVYTYTELIKGLGRAGRVEDAY 321 (638)
Q Consensus 275 ~~~~~----------------g~------~~~A~~~~~~m~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~ 321 (638)
.|..- |+ ++-...-|+.+...++ +.++..|..-.. +..|+..+-.
T Consensus 290 ~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i 367 (835)
T KOG2047|consen 290 AYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQI 367 (835)
T ss_pred HHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHH
Confidence 44321 11 2222233333332210 113333433222 2356677777
Q ss_pred HHHHHHHHcCCCC------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHhcCChHHHHH
Q 006624 322 GLFMNMLKEGCKP------DIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPN---VVTYNTVIKSLFESKAPASEAS 392 (638)
Q Consensus 322 ~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~ 392 (638)
..|.++++. +.| -...|..+...|-..|+++.|..+|++..+...+.- ..+|-.-...-.+..+...+ .
T Consensus 368 ~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~A-l 445 (835)
T KOG2047|consen 368 NTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAA-L 445 (835)
T ss_pred HHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHH-H
Confidence 777777764 111 234577778888888888888888888766432211 11222222222233333322 4
Q ss_pred HHHHHHHhCCCC-----------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc
Q 006624 393 AWFEKMKANGVL-----------------PSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKA 455 (638)
Q Consensus 393 ~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 455 (638)
.+.+....-.-. -+...|+..++.--..|-++....+|+.+++..+ .++.........+-..
T Consensus 446 ~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh 524 (835)
T KOG2047|consen 446 KLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEH 524 (835)
T ss_pred HHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhh
Confidence 433333221000 1223456666666667788888888888877653 3344333334444555
Q ss_pred CCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH--HHHcCCHH
Q 006624 456 KRYEAANELFLELKEYCGCSS-ARVYAVMIKHFGKC---GRLSDAVDLFNEMKKLRCKPDVYTYNALMSG--MVRAGMID 529 (638)
Q Consensus 456 g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~g~~~ 529 (638)
.-++++.+++++-...-..|+ ...|+.-+.-+.+. ..++.|..+|++..+ |++|...-+-.|+.+ --+.|-..
T Consensus 525 ~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar 603 (835)
T KOG2047|consen 525 KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLAR 603 (835)
T ss_pred HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 566777777766555433333 23455555444432 356777777777777 556554333333222 12456666
Q ss_pred HHHHHHHHHHH
Q 006624 530 DAYSLLRRMEE 540 (638)
Q Consensus 530 ~A~~~~~~~~~ 540 (638)
.|+++++++..
T Consensus 604 ~amsiyerat~ 614 (835)
T KOG2047|consen 604 HAMSIYERATS 614 (835)
T ss_pred HHHHHHHHHHh
Confidence 77777776554
No 54
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.53 E-value=3.8e-11 Score=121.08 Aligned_cols=220 Identities=17% Similarity=0.162 Sum_probs=129.2
Q ss_pred hcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCH
Q 006624 116 GRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTA 195 (638)
Q Consensus 116 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 195 (638)
.+..|..|+.+||..+|..|+..|+.+.|- +|.-|.-...+.+...|+.++....++++.+.+. .|.+
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 346788899999999999999999999888 8888877777788888888888888888777766 5688
Q ss_pred HHHHHHHHHHHhcCCHhH---HHHHHHHHHh----CCCCCCCHHHH-------------HHHHHHHHccCChHHHHHHHH
Q 006624 196 NTYNSMILMLMQEGYYEK---IHELYNEMCN----EGNCFPDTVTY-------------SALISAFGKLGRDISAIRLFD 255 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~---A~~~~~~~~~----~~~~~~~~~~~-------------~~l~~~~~~~g~~~~A~~~~~ 255 (638)
.+|..|..+|...|+... +.+.++.+.. .|...|....+ ...+.-..-.|-++.+++++.
T Consensus 84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888888543 3322222211 11110111000 111111122222222222222
Q ss_pred HHH-----------------------------HCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006624 256 EMK-----------------------------ENGL-QPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYT 305 (638)
Q Consensus 256 ~m~-----------------------------~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 305 (638)
.+. +.+. .|+..+|..+++.-..+|+.+.|..++.+|.+.|++.+.+.|-
T Consensus 164 ~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFw 243 (1088)
T KOG4318|consen 164 KVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFW 243 (1088)
T ss_pred hCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccch
Confidence 111 1111 2555566666666666666666666666666666555555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 006624 306 ELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAG 350 (638)
Q Consensus 306 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 350 (638)
.|+-+ .++..-+..++.-|.+.|+.|+..|+...+-.+.++|
T Consensus 244 pLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 244 PLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred hhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 44433 5555555555555666666666666555554444433
No 55
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.52 E-value=6.3e-09 Score=102.15 Aligned_cols=425 Identities=16% Similarity=0.204 Sum_probs=239.5
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhH
Q 006624 134 CLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEK 213 (638)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 213 (638)
.+...|+-++|......-++.+ ..+...|..+.-.+....++++|++.|......+.. |...|.-+.-.-++.|+++-
T Consensus 50 ~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred hhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhh
Confidence 3445566666666666655532 333444555555555556777777777766665433 56666666655666666666
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHhcCCHHHHH
Q 006624 214 IHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG-LQPTAKIYTTLV------SIYFKLGEVEKAL 286 (638)
Q Consensus 214 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~ 286 (638)
..+.-....+..+ .....|..+..+..-.|+...|..++++..+.. -.|+...|.... ....+.|.+++|+
T Consensus 128 ~~~tr~~LLql~~--~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~al 205 (700)
T KOG1156|consen 128 YLETRNQLLQLRP--SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKAL 205 (700)
T ss_pred HHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 6666666666543 445566666666666677777777777666542 134444443322 2334566677776
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHccCCHHHHH-HHHHHHHH
Q 006624 287 GLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLIN-NLINVLGRAGRLEDAL-KLFNKMEA 364 (638)
Q Consensus 287 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~-~~~~~~~~ 364 (638)
+.+..-... +.-....-..-...+.+.+++++|..++..++... ||..-|. .+..++.+-.+.-++. .+|....+
T Consensus 206 e~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 206 EHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 666554332 11012222234456677777888888877777763 4444443 3334443333333333 55555433
Q ss_pred CCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCC---
Q 006624 365 LQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEME----EKG--- 437 (638)
Q Consensus 365 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~--- 437 (638)
.- |....-..+--..............++..+.+.|+++- +..+...|-.....+-..++.-.+. ..|
T Consensus 283 ~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~ 357 (700)
T KOG1156|consen 283 KY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFN 357 (700)
T ss_pred cC--cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCC
Confidence 21 11111111111112223334445666677777776543 2333332222111111111111111 110
Q ss_pred -------CCCCHh--hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006624 438 -------FPPCPA--AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRC 508 (638)
Q Consensus 438 -------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 508 (638)
-+|... ++..++..+-+.|+++.|...++.+..+ .|.-+..|..=.+.+...|++++|...+++..+..
T Consensus 358 ~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH-TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD- 435 (700)
T KOG1156|consen 358 FLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH-TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD- 435 (700)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-
Confidence 144444 3445677888899999999999998875 33335566666788889999999999999998865
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--------HHHH--HHHHHhcCCHHHHHHHHHHhh
Q 006624 509 KPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINS--------HNII--LNGLAKSGGPKRAMEIFTKMQ 574 (638)
Q Consensus 509 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--------~~~l--~~~~~~~g~~~~A~~~~~~m~ 574 (638)
.+|...-.--..-..++.+.++|.++.....+.|. +... |-.+ ..+|.+.|++..|++-|..+.
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 45655544556667788999999999988888764 2221 2111 345777888877877666654
No 56
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.52 E-value=5.2e-09 Score=102.73 Aligned_cols=462 Identities=14% Similarity=0.158 Sum_probs=312.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 006624 128 YMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ 207 (638)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (638)
|-.++++| ..+++....++.+..++. .+....+.....-.+...|+-++|..........++. +.+.|..+.-.+-.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 33444443 567888888888888773 3445556655555667789999999998888776544 78889999988888
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006624 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALG 287 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 287 (638)
..++++|++.|..+...++ .|...+.-+.-.-++.|+++.....-.+..+.. +.....|..++.++.-.|++..|..
T Consensus 88 dK~Y~eaiKcy~nAl~~~~--dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEK--DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876 788888888888888899998888888777752 3356678889999999999999999
Q ss_pred HHHHHHhCC-CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHHHHHHH
Q 006624 288 LVQEMKGKG-CALTVYTYTELI------KGLGRAGRVEDAYGLFMNMLKEGCKPDIVL-INNLINVLGRAGRLEDALKLF 359 (638)
Q Consensus 288 ~~~~m~~~~-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~ 359 (638)
++++..+.. -.|+...|.... ....+.|..++|++.+..-... + .|... -..-...+.+.+++++|..++
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 999998764 245666555432 3456788888888877665443 1 13333 334566788999999999999
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHH-hcCChHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCC
Q 006624 360 NKMEALQCKPNVVTYNTVIKSLF-ESKAPASEASAWFEKMKANGVLPSPFTYSI-LIDGFCKTNRVEKAHLLLEEMEEKG 437 (638)
Q Consensus 360 ~~~~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~ 437 (638)
..+...+ ||...|+..+..+. .-.+..++...++....+.- |....-.. -++......-.+..-.++..+.+.|
T Consensus 243 ~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 243 RRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 9999865 88888877776655 34455555445666655431 11111111 1111111222334455667777888
Q ss_pred CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH----cC----------CCCcHH--HHHHHHHHHHhcCCHHHHHHHHH
Q 006624 438 FPPCPAAYCSLINGYGKAKRYEAANELFLELKE----YC----------GCSSAR--VYAVMIKHFGKCGRLSDAVDLFN 501 (638)
Q Consensus 438 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~----------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~ 501 (638)
+++ ++..+...|-.-...+-..++...+.. .+ -+|... ++-.++..|-+.|+++.|...++
T Consensus 319 ~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 654 344444444332222211222222211 10 134443 34567888999999999999999
Q ss_pred HHHhCCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 006624 502 EMKKLRCKPD-VYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKP 580 (638)
Q Consensus 502 ~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 580 (638)
..... .|+ +..|..-...+...|++++|...+++..+.. .||...-.--..-..++...++|.++.....+.|.
T Consensus 396 ~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~-- 470 (700)
T KOG1156|consen 396 LAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF-- 470 (700)
T ss_pred HHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--
Confidence 99875 355 3445555677889999999999999999864 34554443455666788999999999999988664
Q ss_pred CHH--------HHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 006624 581 DAV--------SYNTI--LGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 581 ~~~--------~~~~l--~~~~~~~g~~~~A~~~~~~m~ 609 (638)
+.. .|-.+ ..+|.+.|++..|++=|....
T Consensus 471 ~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 471 GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 222 22222 456788888888776555443
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=9.8e-10 Score=101.76 Aligned_cols=287 Identities=15% Similarity=0.104 Sum_probs=211.1
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHH
Q 006624 172 KAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAI 251 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 251 (638)
-.|++.+|+++..+-.+.+.. ....|..-+++--+.|+.+.+-.+..++.+..+. ++...+-+........|+++.|.
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~-~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD-DTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC-chHHHHHHHHHHHHhCCCchhHH
Confidence 369999999999998887644 3445666667778899999999999999887433 66777788888999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHH
Q 006624 252 RLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV-------YTYTELIKGLGRAGRVEDAYGLF 324 (638)
Q Consensus 252 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~ 324 (638)
.-++++.+.+ +.+.........+|.+.|++.....++.++.+.|.--+. .+|..+++-....+..+.-...|
T Consensus 174 ~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 9999999875 447888999999999999999999999999999876553 46677777776677777766777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 006624 325 MNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVL 404 (638)
Q Consensus 325 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 404 (638)
++..+. ...++..-..++.-+.+.|+.++|.++.++..+.+..|+.. .++ ...+-++...-....-......+.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~---~~~-~~l~~~d~~~l~k~~e~~l~~h~~- 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC---RLI-PRLRPGDPEPLIKAAEKWLKQHPE- 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH---HHH-hhcCCCCchHHHHHHHHHHHhCCC-
Confidence 776554 44467777888999999999999999999998877666522 122 223444444432222233333333
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 405 PSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKE 470 (638)
Q Consensus 405 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (638)
++..+.+|...|.+.+.+.+|...|+...+. .|+..+|..+.+++.+.|+..+|.++.++...
T Consensus 327 -~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 327 -DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred -ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3356666777777777777777777766554 56666777777777777777777766666553
No 58
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=6.6e-12 Score=123.24 Aligned_cols=285 Identities=16% Similarity=0.116 Sum_probs=134.6
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHccCChHHHHHH
Q 006624 175 MVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCF-PDTVTYSALISAFGKLGRDISAIRL 253 (638)
Q Consensus 175 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 253 (638)
+..+|...|..+...-.. +......+.++|...+++++|.++|+.+.+..+.. .+...|.+.+--+-+. -++.+
T Consensus 334 ~~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 344555555554443221 33444455556666666666666666655544321 2334444444332211 11111
Q ss_pred HH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006624 254 FD-EMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGC 332 (638)
Q Consensus 254 ~~-~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 332 (638)
+. .+.+. -+-.+.+|..+.++|.-+++.+.|++.|+...+.++. ...+|+.+.+-+.....+|.|...|+..+....
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 11 11111 1223445555555555555555555555555544322 444555555555555555555555554443211
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006624 333 KPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSI 412 (638)
Q Consensus 333 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 412 (638)
. +-.+|.-+...|.+.++++.|.-.|+++.+.+ | .+.+....
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P-----------------------------------~nsvi~~~ 528 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--P-----------------------------------SNSVILCH 528 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC--c-----------------------------------cchhHHhh
Confidence 1 11122223344445555555544444443322 1 12223333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 006624 413 LIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGR 492 (638)
Q Consensus 413 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 492 (638)
+...+.+.|+.++|+++++++...+ +.|+..-...+..+...+++++|...++++++. .+.+..++..+...|-+.|+
T Consensus 529 ~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~ 606 (638)
T KOG1126|consen 529 IGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGN 606 (638)
T ss_pred hhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHcc
Confidence 4444555666666666666665554 444444444455555556666666666666554 33445555555666666666
Q ss_pred HHHHHHHHHHHHhC
Q 006624 493 LSDAVDLFNEMKKL 506 (638)
Q Consensus 493 ~~~A~~~~~~m~~~ 506 (638)
.+.|+.-|.-+.+.
T Consensus 607 ~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 607 TDLALLHFSWALDL 620 (638)
T ss_pred chHHHHhhHHHhcC
Confidence 66666665555543
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=2.9e-10 Score=101.87 Aligned_cols=120 Identities=15% Similarity=0.203 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHccCChHHH
Q 006624 174 KMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD---TVTYSALISAFGKLGRDISA 250 (638)
Q Consensus 174 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A 250 (638)
.+.++|.++|-+|.+.... +..+.-+|.+.|-+.|..++|+.+.+.+.+.... +. ......|..-|...|-+|.|
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdl-T~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDL-TFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred cCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHHHHHhhhhhHH
Confidence 3455555555555553221 3444445555555555555555555555543111 11 11223334444455555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006624 251 IRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKG 296 (638)
Q Consensus 251 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 296 (638)
.++|..+.+.| ..-......|+..|-+..+|++|+++-+++...+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~ 171 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLG 171 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC
Confidence 55555554432 1223344444555555555555555555444443
No 60
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=1.4e-09 Score=98.72 Aligned_cols=433 Identities=16% Similarity=0.137 Sum_probs=274.5
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh
Q 006624 168 NILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD 247 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 247 (638)
.-+....++..|+.+++--...+-+-...+-..+...+...|++++|...|..+..... ++...+..|.-.+.-.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~--~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDD--APAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCC--CCcccchhHHHHHHHHHHH
Confidence 44555678888888887765443332223334456777889999999999999988655 6777777777777778889
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 248 ISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNM 327 (638)
Q Consensus 248 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 327 (638)
.+|.++-++..+ ++-.-..|.+...+.++-++-..+.+.+... ...-.+|.......-.+++|+++|...
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999887665432 4455556677777888888877777666542 233445556666667899999999999
Q ss_pred HHcCCCCCHHHHHH-HHHHHHccCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCC
Q 006624 328 LKEGCKPDIVLINN-LINVLGRAGRLEDALKLFNKMEALQCKPNV-VTYNTVIKSLFESKAPASEASAWFEKMKANGVLP 405 (638)
Q Consensus 328 ~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 405 (638)
+..+ |+-...|. +.-+|.+..-++.+.++++-....- ||+ ...|......++.-+...+ +.-...+.+++...
T Consensus 178 L~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~--pdStiA~NLkacn~fRl~ngr~a-e~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 178 LQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF--PDSTIAKNLKACNLFRLINGRTA-EDEKKELADNIDQE 252 (557)
T ss_pred HhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC--CCcHHHHHHHHHHHhhhhccchh-HHHHHHHHhccccc
Confidence 8763 34444443 4456788888899999988877633 444 4444444444433222222 22223444433211
Q ss_pred CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHH-
Q 006624 406 SPFTYSILIDGFCKT-----NRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARV- 479 (638)
Q Consensus 406 ~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~- 479 (638)
| ..+.-.++. .+-+.|++++--+.+. -+.+-..|+-.|.+.+++.+|..+..++... .|-...
T Consensus 253 ----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~Eyil 321 (557)
T KOG3785|consen 253 ----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYIL 321 (557)
T ss_pred ----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHH
Confidence 1 122223332 3457788888776653 2345566777899999999999988776431 122222
Q ss_pred ----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006624 480 ----YAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDV-YTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIIL 554 (638)
Q Consensus 480 ----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 554 (638)
+..+..-......+.-|...|.-.-..+..-|. .--.++..++.-..++++.+.+++....--...|...+ .+.
T Consensus 322 Kgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~A 400 (557)
T KOG3785|consen 322 KGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLA 400 (557)
T ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHH
Confidence 112222222223455677777766555443332 22345556666677889999999888875333334443 578
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhccCC
Q 006624 555 NGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYN-TILGCLSRAGMFEEAARLMKDMNAKGFEYDQI-TYSSILEAVGKVDE 632 (638)
Q Consensus 555 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~ 632 (638)
.+.+..|.+.+|.++|-++....++ |..+|. .+.++|.+.|+++-|..++-++ +.+.+.. ....+.+-|.+.++
T Consensus 401 QAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~e 476 (557)
T KOG3785|consen 401 QAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANE 476 (557)
T ss_pred HHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHH
Confidence 8999999999999999988765554 555665 6678999999999997776655 3333333 34445566776665
Q ss_pred c
Q 006624 633 D 633 (638)
Q Consensus 633 ~ 633 (638)
+
T Consensus 477 F 477 (557)
T KOG3785|consen 477 F 477 (557)
T ss_pred H
Confidence 4
No 61
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=2.9e-09 Score=103.32 Aligned_cols=420 Identities=15% Similarity=0.161 Sum_probs=227.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH--HHH
Q 006624 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA--LIS 239 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--l~~ 239 (638)
...+=++.+...|++++|.....++...+ +.+...+..-+.++++.++|++|+.+.+.-.. ..+++. +=.
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~-------~~~~~~~~fEK 85 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA-------LLVINSFFFEK 85 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch-------hhhcchhhHHH
Confidence 33444567778888999999998888876 33677777778888889999998865554321 111222 345
Q ss_pred HHH--ccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcC
Q 006624 240 AFG--KLGRDISAIRLFDEMKENGLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKG-LGRAG 315 (638)
Q Consensus 240 ~~~--~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g 315 (638)
+|| +.+..++|+..++ |..+ |..+...-...+.+.|++++|+++|+.+.+.+.. + +...+.+ +...+
T Consensus 86 AYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~ 156 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVA 156 (652)
T ss_pred HHHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHH
Confidence 555 6788899988887 3333 3446666777888999999999999999877543 2 2222111 11111
Q ss_pred CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 006624 316 RVEDAYGLFMNMLKEGCKP--DIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASA 393 (638)
Q Consensus 316 ~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 393 (638)
- +... +.+......| +-..+-.....+...|++.+|+++++.....+.+ .+. .++..+ +.
T Consensus 157 a---~l~~-~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e-----------~l~-~~d~~e--Ee 218 (652)
T KOG2376|consen 157 A---ALQV-QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICRE-----------KLE-DEDTNE--EE 218 (652)
T ss_pred H---hhhH-HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-----------hhc-ccccch--hh
Confidence 0 1111 0122222222 1222233455667889999999999988432110 000 011000 00
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh----HHHHHHHHH----------------
Q 006624 394 WFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAA----YCSLINGYG---------------- 453 (638)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~li~~~~---------------- 453 (638)
+-.++ ++ .-..+.-.+-..|+.++|..++...++.. ++|... .+.|+..-.
T Consensus 219 ie~el-------~~-IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~ 289 (652)
T KOG2376|consen 219 IEEEL-------NP-IRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQ 289 (652)
T ss_pred HHHHH-------HH-HHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHH
Confidence 00000 00 11123333445566666666666555554 222211 111111100
Q ss_pred -----------------------------ccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh--cCCHHHHHHHHHH
Q 006624 454 -----------------------------KAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGK--CGRLSDAVDLFNE 502 (638)
Q Consensus 454 -----------------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~ 502 (638)
-.+..+.+.++..... +..|. ..+..++....+ ...+.+|..++..
T Consensus 290 ~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~ 366 (652)
T KOG2376|consen 290 VFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQ 366 (652)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 0111111111111111 11122 223333332222 2245667777776
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006624 503 MKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLR--------RMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQ 574 (638)
Q Consensus 503 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 574 (638)
.-+..-.......-..+......|+++.|.+++. ...+.+..|-.+ ..+...+.+.++.+.|..++...+
T Consensus 367 ~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai 444 (652)
T KOG2376|consen 367 FADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAI 444 (652)
T ss_pred HhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHH
Confidence 6654312223444555666778999999999998 555555555444 446667778887777777777765
Q ss_pred hC--CCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 006624 575 HS--EIKPDAVS----YNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVD 631 (638)
Q Consensus 575 ~~--~~~p~~~~----~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 631 (638)
.. .-.+.... +.-++.-=.+.|+-++|..+++++.+.. ++|..+...++.+|++.+
T Consensus 445 ~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 445 KWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD 506 (652)
T ss_pred HHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC
Confidence 41 11122222 3333333356799999999999998753 677788888888887765
No 62
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.45 E-value=3.1e-08 Score=97.17 Aligned_cols=216 Identities=12% Similarity=0.166 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC---------
Q 006624 408 FTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPC---PAAYCSLINGYGKAKRYEAANELFLELKEYCGCS--------- 475 (638)
Q Consensus 408 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--------- 475 (638)
..|..+.+.|-..|+++.|..+|++..+...+-- ..+|..-...-.+..+++.|.++.+.+....-.+
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 3466677778888888888888888876543322 3455555666667778888888877776531111
Q ss_pred --------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-
Q 006624 476 --------SARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD- 546 (638)
Q Consensus 476 --------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~- 546 (638)
+..+|...++.--..|-++....+++++.+..+.......| ....+-.+.-++++.+.|++-+..-..|+
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 23345556666666777788888888887765432222222 22233455667788887777665533344
Q ss_pred HHHHHHHHHHHHh-c--CCHHHHHHHHHHhhhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--hh
Q 006624 547 INSHNIILNGLAK-S--GGPKRAMEIFTKMQHSEIKPDAV--SYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQ--IT 619 (638)
Q Consensus 547 ~~~~~~l~~~~~~-~--g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~ 619 (638)
...|+..+.-+.+ - .+++.|..+|++..+ |++|... .|-.....=-+-|....|..++++.... +++.. ..
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~m 624 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDM 624 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHH
Confidence 3456665554433 2 367888888888887 6665432 2222222233467788888888886543 45444 36
Q ss_pred HHHHHHH
Q 006624 620 YSSILEA 626 (638)
Q Consensus 620 ~~~l~~~ 626 (638)
|+..|.-
T Consensus 625 yni~I~k 631 (835)
T KOG2047|consen 625 YNIYIKK 631 (835)
T ss_pred HHHHHHH
Confidence 7776653
No 63
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=4.4e-08 Score=91.01 Aligned_cols=273 Identities=14% Similarity=0.064 Sum_probs=177.3
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH-HhcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 006624 333 KPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSL-FESKAPASEASAWFEKMKANGVLPSPFTYS 411 (638)
Q Consensus 333 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 411 (638)
+-|+.....+..++...|+.++|...|++....+ |+..+-.-+-..+ ...|+.... ..+...+.... ......|-
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~-~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQD-SALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhH-HHHHHHHHhhh-hcchhhhh
Confidence 3355555666666666666666666666655422 3332211111111 122222222 22222222110 11223333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 006624 412 ILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCG 491 (638)
Q Consensus 412 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 491 (638)
.-+......++++.|+.+-++.++.+ +.+...+..-...+...++.++|.-.|+.+... -+.+...|..|+++|...|
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhc
Confidence 33445556778888888888888775 566677777778888899999999999988875 4467888999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHH-HHHHH-cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 006624 492 RLSDAVDLFNEMKKLRCKPDVYTYNALM-SGMVR-AGMIDDAYSLLRRMEEDGCVPD-INSHNIILNGLAKSGGPKRAME 568 (638)
Q Consensus 492 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 568 (638)
++.+|..+-+...+. ++.+..+.+.+. ..|.. ...-++|.+++++.+.. .|+ ....+.+...+...|..++++.
T Consensus 383 ~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 383 RFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred hHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHH
Confidence 999988877765543 234555555442 23332 22347888888887764 566 4456677788888999999999
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 006624 569 IFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQI 618 (638)
Q Consensus 569 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 618 (638)
++++... ..||....+.|.+.+...+.+++|.+.|....+. .|+..
T Consensus 460 LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--dP~~~ 505 (564)
T KOG1174|consen 460 LLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--DPKSK 505 (564)
T ss_pred HHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--Cccch
Confidence 9998874 3688888999999999999999999998888743 45443
No 64
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=1.6e-10 Score=107.77 Aligned_cols=198 Identities=13% Similarity=0.057 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006624 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
..+..+...+...|++++|...+++..+..+ .+...+..+...+...|++++|.+.+++.....+ .+...+..+...
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~ 108 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLNP--NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHH
Confidence 3444444455555555555555555444321 1344444455555555555555555555554433 333444445555
Q ss_pred HHccCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006624 241 FGKLGRDISAIRLFDEMKENGL-QPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVED 319 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 319 (638)
+...|++++|.+.+++..+... ......+..+...+...|++++|.+.+++..+..+. +...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555544211 112334444555555555555555555555544322 34445555555555556665
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006624 320 AYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 320 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 363 (638)
|...+++..+. .+.+...+..++..+...|+.+.|..+.+.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555555554 22234444445555555555555555555443
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.43 E-value=1.4e-10 Score=121.44 Aligned_cols=266 Identities=14% Similarity=0.055 Sum_probs=188.3
Q ss_pred CHHHHHHHHHHHH-----hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---------hCCCHHHHHHHHHHHhhC
Q 006624 124 NSTTYMALIRCLD-----ETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILG---------KAKMVNKALSIFYQIKSR 189 (638)
Q Consensus 124 ~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~ 189 (638)
+...|...+++.. ..+.+++|...+++.++.. +.+...+..+..++. ..+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 4455555554431 2356899999999998853 334556666665543 234589999999999988
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-HHH
Q 006624 190 KCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPT-AKI 268 (638)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~ 268 (638)
++. +..++..+...+...|++++|...|+++++.++ .+...+..+...+...|++++|...+++..+.. |+ ...
T Consensus 334 dP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P--~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~ 408 (553)
T PRK12370 334 DHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSP--ISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAA 408 (553)
T ss_pred CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhh
Confidence 654 788899999999999999999999999999875 567788889999999999999999999999864 43 334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 006624 269 YTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGR 348 (638)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 348 (638)
+..++..+...|++++|+..+++......+-+...+..+...+...|+.++|...+.++..... .+....+.+...|+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhc
Confidence 4445556777899999999999987664333566677788889999999999999988766522 244455666677787
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 006624 349 AGRLEDALKLFNKMEAL-QCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANG 402 (638)
Q Consensus 349 ~g~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 402 (638)
.| +.|...++.+.+. ...+....+..++.++ .|+...+ ..+ +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~--~g~~~~~-~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVA--HGEAIAE-KMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHH--HhhhHHH-HHH-HHhhccc
Confidence 77 4777777766442 2233333444444333 3333332 333 6666653
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=1.9e-10 Score=107.22 Aligned_cols=203 Identities=12% Similarity=0.038 Sum_probs=172.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
....+..+...+...|++++|...+++.++.. +.+...+..+...+...|++++|.+.|++..+.... +...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 45778889999999999999999999998754 556788889999999999999999999999887543 6778888999
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006624 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 283 (638)
.+...|++++|.+.|++.............+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 9999999999999999998754322345677788889999999999999999998864 335678889999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006624 284 KALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 284 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
+|...+++..+.. +.+...+..++..+...|+.++|..+.+.+...
T Consensus 187 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 187 DARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999998873 346777778888899999999999998877653
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.42 E-value=5.1e-10 Score=117.13 Aligned_cols=268 Identities=11% Similarity=0.010 Sum_probs=190.5
Q ss_pred CCCHHHHHHHHHHHHh-----CCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh---------cCCHhHHHHHHHHHH
Q 006624 157 VMGPSVLSEIVNILGK-----AKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ---------EGYYEKIHELYNEMC 222 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~ 222 (638)
..+...|...+++... .+.+++|...|++..+..+. +...|..+..++.. .+++++|...++++.
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4455666555555322 23568999999999988543 56677777665542 345899999999999
Q ss_pred hCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 006624 223 NEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVY 302 (638)
Q Consensus 223 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 302 (638)
+.++ .+...+..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|+..+++..+.++. +..
T Consensus 332 ~ldP--~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~ 407 (553)
T PRK12370 332 ELDH--NNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA 407 (553)
T ss_pred hcCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence 9876 678889999999999999999999999999875 345778899999999999999999999999998765 333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHH-HHHHHH
Q 006624 303 TYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYN-TVIKSL 381 (638)
Q Consensus 303 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~ll~~~ 381 (638)
.+..++..+...|++++|...++++.+...+-+...+..+..++...|+.++|...++++... .|+..... .+...+
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHH
Confidence 344445556778999999999999887643335566788888999999999999999987653 34444444 444444
Q ss_pred HhcCChHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006624 382 FESKAPASEASAWFEKMKAN-GVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKG 437 (638)
Q Consensus 382 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 437 (638)
+..++ . +...++.+.+. ...+....+ .-..+.-.|+-+.+..+ +++.+.+
T Consensus 486 ~~~g~--~-a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNSE--R-ALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccHH--H-HHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 55553 2 24444444432 112222222 33445566777776666 7777654
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=3.5e-11 Score=107.63 Aligned_cols=230 Identities=14% Similarity=0.102 Sum_probs=188.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHH-HHHHHHHHh
Q 006624 129 MALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTY-NSMILMLMQ 207 (638)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~ 207 (638)
+-+.++|.+.|.+.+|.+.++..+. ..|-+.+|..+..+|.+-.+++.|+.+|.+-.+. .|-.+|| .-+.+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~--q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT--QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh--cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 6678899999999999999998877 4677788888999999999999999999988776 4444554 446677888
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006624 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALG 287 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 287 (638)
.++.++|.++|+...+..+ .++.....+...|.-.++.+-|+++++++.+.|+. +...|+.+.-+|.-.+++|-++.
T Consensus 303 m~~~~~a~~lYk~vlk~~~--~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHP--INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHhHHHHHHHHHHHHhcCC--ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 8999999999999988776 67888888888888889999999999999998864 88888888888888999999988
Q ss_pred HHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 006624 288 LVQEMKGKGCAL--TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEAL 365 (638)
Q Consensus 288 ~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 365 (638)
-|+.....--.| -...|-.+.......|++..|.+.|+-.+..+.. ....+|.|.-.-.+.|++++|..+++...+.
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 888876543222 3456667777788889999999999888877554 6778888888888999999999999888764
Q ss_pred C
Q 006624 366 Q 366 (638)
Q Consensus 366 ~ 366 (638)
.
T Consensus 459 ~ 459 (478)
T KOG1129|consen 459 M 459 (478)
T ss_pred C
Confidence 3
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.39 E-value=3.4e-09 Score=106.93 Aligned_cols=130 Identities=19% Similarity=0.224 Sum_probs=78.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 006624 444 AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMV 523 (638)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 523 (638)
++..+.+.|...|++++|.+.+++.++. .|..+..|..-...|-+.|++.+|.+.++...... .-|...-+-....+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h-tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH-TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHH
Confidence 3445566666677777777777777665 23346666666677777777777777777766654 235555555566666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHH------HH--HHHHHHHHhcCCHHHHHHHHHHhhh
Q 006624 524 RAGMIDDAYSLLRRMEEDGCVPDIN------SH--NIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 524 ~~g~~~~A~~~~~~~~~~~~~p~~~------~~--~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
+.|++++|.+++......+..|-.. .| .-...+|.+.|++..|++.|..+.+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7777777777776666554322211 11 2234566677777777666665543
No 70
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=4.7e-08 Score=95.14 Aligned_cols=447 Identities=13% Similarity=0.065 Sum_probs=236.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHH--HHHHH-
Q 006624 130 ALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM--ILMLM- 206 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~- 206 (638)
+=++.+..+|++++|.+....++..+ +.+...+..-+.++.+.++|++|+.+.+.-. -..+++.. =.+||
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~------~~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNG------ALLVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc------hhhhcchhhHHHHHHH
Confidence 44566667777777777777777654 5555666666677777777777775443321 11122222 33443
Q ss_pred -hcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 006624 207 -QEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP-TAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 207 -~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~ 284 (638)
+.+..++|+..++.... .+..+...-...+.+.|++++|+.+|+.+.+.+.+. +...-..++..-.
T Consensus 90 Yrlnk~Dealk~~~~~~~-----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a------- 157 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDR-----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA------- 157 (652)
T ss_pred HHcccHHHHHHHHhcccc-----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-------
Confidence 66777777777772211 334455555666777777777777777777654321 1111111111110
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHcC-------CCCCHH-------HHHHHHHHHH
Q 006624 285 ALGLVQEMKGKGCALTVYTYTEL---IKGLGRAGRVEDAYGLFMNMLKEG-------CKPDIV-------LINNLINVLG 347 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~~-------~~p~~~-------~~~~l~~~~~ 347 (638)
+... +.+......| ..+|..+ .-.+...|++.+|+++++...+.+ -.-+.. .-..+..++-
T Consensus 158 ~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 158 ALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ 235 (652)
T ss_pred hhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 0111 1111111122 2223222 334556777777777777763211 110110 1223445566
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHh----HHHHHHHHHHhcCChHH-HHHHHHHHHHhCCC----------CCCHHHHH-
Q 006624 348 RAGRLEDALKLFNKMEALQCKPNVV----TYNTVIKSLFESKAPAS-EASAWFEKMKANGV----------LPSPFTYS- 411 (638)
Q Consensus 348 ~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~~~----------~~~~~~~~- 411 (638)
..|+.++|..++......... |.. .-|.++.. ....+..+ .....++....... .-..+..|
T Consensus 236 ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~ 313 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNN 313 (652)
T ss_pred HhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888777765532 321 22222221 11111111 11111111110000 00001111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH--HccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 006624 412 ILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGY--GKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGK 489 (638)
Q Consensus 412 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 489 (638)
.++. ...+..+.+.++....... .|. ..+..++..+ ++.....++.+++....+........+.-.++.....
T Consensus 314 ~lL~--l~tnk~~q~r~~~a~lp~~--~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 314 ALLA--LFTNKMDQVRELSASLPGM--SPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHH--HHhhhHHHHHHHHHhCCcc--Cch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHh
Confidence 1222 2233344444443332211 222 2333333332 2223577778888777775444446677777888889
Q ss_pred cCCHHHHHHHHH--------HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHH----HH
Q 006624 490 CGRLSDAVDLFN--------EMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED--GCVPDINSHNII----LN 555 (638)
Q Consensus 490 ~g~~~~A~~~~~--------~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l----~~ 555 (638)
.|+++.|++++. .+.+.+..|. +...+...+.+.++.+.|..++++.+.. .-.+......++ ..
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~ 466 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAE 466 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhH
Confidence 999999999998 5555444444 4445666777888877788888777642 011222233333 33
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 556 GLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDM 608 (638)
Q Consensus 556 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 608 (638)
.-.+.|+.++|..+++++.+.+ .+|..+...++.+|++. +.+.|..+-+.+
T Consensus 467 f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 467 FKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 3356799999999999999743 46788888899888876 677777766554
No 71
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.36 E-value=1.1e-07 Score=96.07 Aligned_cols=295 Identities=15% Similarity=0.128 Sum_probs=197.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-
Q 006624 130 ALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQE- 208 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 208 (638)
-...++...|++++|.+.++.-.+. +......+......+.+.|+.++|..+|..+.++++. |..-|..+..++.-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhc
Confidence 3456678899999999999875442 3445667788888999999999999999999998543 455555555555322
Q ss_pred ----CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006624 209 ----GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD-ISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 209 ----g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 283 (638)
...+...++|+++.... |.......+.-.+..-..+ ..+..++..+..+|++ .+|+.|-..|......+
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAA 160 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHH
Confidence 25677888898887765 4333333332222222222 3455667777888864 45666666676555555
Q ss_pred HHHHHHHHHHhC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006624 284 KALGLVQEMKGK----G----------CALTV--YTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLG 347 (638)
Q Consensus 284 ~A~~~~~~m~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 347 (638)
-..+++...... + -.|+. +++.-+...|...|++++|+.+.++.++..+. .+..|..-...+-
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilK 239 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHH
Confidence 555666555432 1 12333 35566678888999999999999999887433 4778888888999
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHH------H--HHHHHHHHh
Q 006624 348 RAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFT------Y--SILIDGFCK 419 (638)
Q Consensus 348 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~--~~l~~~~~~ 419 (638)
..|++.+|.+.++.....+.. |...-+-....+.+.|...++ ...+......+..|-... | .....+|.+
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A-~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEA-EKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHH-HHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998876533 555555556666777777766 666666666554332211 1 334567888
Q ss_pred cCCHHHHHHHHHHHHh
Q 006624 420 TNRVEKAHLLLEEMEE 435 (638)
Q Consensus 420 ~~~~~~A~~~~~~~~~ 435 (638)
.|++..|++.|..+.+
T Consensus 318 ~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLK 333 (517)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 8888888877776654
No 72
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.35 E-value=3.6e-08 Score=98.98 Aligned_cols=429 Identities=13% Similarity=0.025 Sum_probs=238.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHH
Q 006624 156 CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYS 235 (638)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 235 (638)
..-++.+|..+.-++...|+++.+.+.|++....-+ .....|+.+...|...|.-..|+.+.+.-......++|...+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 345777888888888888888888888888765433 3667788888888888888888888888776653323444444
Q ss_pred HHHHHHH-ccCChHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHh-----------cCCHHHHHHHHHHHHhCCCCC
Q 006624 236 ALISAFG-KLGRDISAIRLFDEMKEN--GL--QPTAKIYTTLVSIYFK-----------LGEVEKALGLVQEMKGKGCAL 299 (638)
Q Consensus 236 ~l~~~~~-~~g~~~~A~~~~~~m~~~--g~--~~~~~~~~~li~~~~~-----------~g~~~~A~~~~~~m~~~~~~~ 299 (638)
..-+.|. +.+.+++++.+-.+.... |. ......|..+.-+|.. .....++++.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 4444444 346777777777666652 11 1233444444444432 12246777888888777654
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 006624 300 TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIK 379 (638)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 379 (638)
|....--+.--|+..++++.|.+...+..+-+..-+...|..+.-.+...+++.+|+.+.+.....- ..|......-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhh
Confidence 3333223334467788888888888888887666688888888888888888888888887764421 011111111111
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH------hcCCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHH
Q 006624 380 SLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFC------KTNRVEKAHLLLEEMEEK--GFPPCPAAYCSLING 451 (638)
Q Consensus 380 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~ 451 (638)
.-..-++..++ .. |...++..+- +.++-.+..++...+.-. .....+.++..+...
T Consensus 556 i~~~~~~~e~~-l~---------------t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 556 IELTFNDREEA-LD---------------TCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred hhhhcccHHHH-HH---------------HHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 11112222222 11 1111111111 111111111111111100 001112222222222
Q ss_pred HHccCCHHHHHHHHHHHHHcCCC--Cc------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 006624 452 YGKAKRYEAANELFLELKEYCGC--SS------ARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMV 523 (638)
Q Consensus 452 ~~~~g~~~~A~~~~~~~~~~~~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 523 (638)
....+ +.+..-.. +...... |+ ...|......+.+.+..++|...+.+..+.. +-....|......+.
T Consensus 620 ~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 620 VASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLE 695 (799)
T ss_pred HHhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHH
Confidence 11110 10000000 1111011 11 2345556666677777777776666665542 334555666666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006624 524 RAGMIDDAYSLLRRMEEDGCVPD-INSHNIILNGLAKSGGPKRAME--IFTKMQHSEIKPDAVSYNTILGCLSRAGMFEE 600 (638)
Q Consensus 524 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 600 (638)
..|..++|.+.|...... .|+ +.+..++...+.+.|+..-|.. ++..+.+.+. -+...|..+...+.+.|+.++
T Consensus 696 ~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred HHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHH
Confidence 777777777777777664 343 5566677777777776666655 7777776542 256677777777777777777
Q ss_pred HHHHHHHHHh
Q 006624 601 AARLMKDMNA 610 (638)
Q Consensus 601 A~~~~~~m~~ 610 (638)
|.+.|.....
T Consensus 773 Aaecf~aa~q 782 (799)
T KOG4162|consen 773 AAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHh
Confidence 7777776654
No 73
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.32 E-value=3.9e-08 Score=98.72 Aligned_cols=438 Identities=15% Similarity=0.081 Sum_probs=287.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC-HH
Q 006624 118 RRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT-AN 196 (638)
Q Consensus 118 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~ 196 (638)
...+..+...|..+.=++...|++..+.+.|++.... +.-....|..+.-.+...|.-..|..+.+.-......|+ ..
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 3445568899999999999999999999999987653 455667899999999999999999999988766543343 33
Q ss_pred HHHHHHHHHHh-cCCHhHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHcc-----------CChHHHHHHHHHHHHCC
Q 006624 197 TYNSMILMLMQ-EGYYEKIHELYNEMCNEGNC---FPDTVTYSALISAFGKL-----------GRDISAIRLFDEMKENG 261 (638)
Q Consensus 197 ~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~m~~~g 261 (638)
.+......|.+ -+.+++++++..++...... ......|..+.-+|... ....++++.+++..+.+
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 34333344443 47788888888777662111 13345555555555432 12357888899988765
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006624 262 LQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINN 341 (638)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 341 (638)
. -|..+...+.--|.-.++++.|.+..++..+.+..-+...|..+.-.+...+++.+|+.+.+.....-.. |-.....
T Consensus 475 ~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~ 552 (799)
T KOG4162|consen 475 P-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDG 552 (799)
T ss_pred C-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchh
Confidence 2 3444444556667788999999999999999877779999999999999999999999999988875111 2222222
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHH-
Q 006624 342 LINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKAN--GVLPSPFTYSILIDGFC- 418 (638)
Q Consensus 342 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~- 418 (638)
-+..-..-++.++++.....+... |...- .....++ ..........+.-. .......++..+.....
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~--------we~~~-~~q~~~~-~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~ 622 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLAL--------WEAEY-GVQQTLD-EGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS 622 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHH--------HHhhh-hHhhhhh-hhhhhhhhcccccCcccccccchhhHHHHHHHHh
Confidence 223333456777776666555331 00000 0000000 00001111111110 01111223332222221
Q ss_pred --hcCCHHHHHHHHHHHHhCCCCCC------HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 006624 419 --KTNRVEKAHLLLEEMEEKGFPPC------PAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKC 490 (638)
Q Consensus 419 --~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 490 (638)
+.-..+.. +....... .|+ ...|......+.+.+..++|...+.++.+. .+.....|......+...
T Consensus 623 ~~~~~~se~~---Lp~s~~~~-~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~ 697 (799)
T KOG4162|consen 623 QLKSAGSELK---LPSSTVLP-GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVK 697 (799)
T ss_pred hhhhcccccc---cCcccccC-CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHH
Confidence 11111111 11111111 111 234566677788888888888888888775 456677888888888899
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006624 491 GRLSDAVDLFNEMKKLRCKPD-VYTYNALMSGMVRAGMIDDAYS--LLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAM 567 (638)
Q Consensus 491 g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 567 (638)
|.+++|.+.|...... .|+ +....++...+.+.|+..-|.. ++..+.+.+. .+...|..+...+.+.|+.++|.
T Consensus 698 ~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aa 774 (799)
T KOG4162|consen 698 GQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAA 774 (799)
T ss_pred HhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHH
Confidence 9999999999988775 354 5678888899999998777777 9999998753 37899999999999999999999
Q ss_pred HHHHHhhhC
Q 006624 568 EIFTKMQHS 576 (638)
Q Consensus 568 ~~~~~m~~~ 576 (638)
+.|+...+.
T Consensus 775 ecf~aa~qL 783 (799)
T KOG4162|consen 775 ECFQAALQL 783 (799)
T ss_pred HHHHHHHhh
Confidence 999988763
No 74
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.32 E-value=1.7e-09 Score=107.64 Aligned_cols=207 Identities=22% Similarity=0.279 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC
Q 006624 266 AKIYTTLVSIYFKLGEVEKALGLVQEMKGK-----GC-ALTVYT-YTELIKGLGRAGRVEDAYGLFMNMLKE-----GCK 333 (638)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~ 333 (638)
..+...+...|...|++++|+.+++...+. |. .|...+ .+.+...|...+++++|..+|+++... |..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 445666888888888888888888877654 21 223333 334677889999999999999998762 221
Q ss_pred -C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCH-HHH
Q 006624 334 -P-DIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSP-FTY 410 (638)
Q Consensus 334 -p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~ 410 (638)
| -..+++.|...|.+.|++++|...++...+. ++.... -..|.. ..+
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I-----------------------------~~~~~~-~~~~~v~~~l 328 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI-----------------------------YEKLLG-ASHPEVAAQL 328 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH-----------------------------HHHhhc-cChHHHHHHH
Confidence 2 2346788888999999999999999887541 111000 001111 234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC---CC----CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC----C---CCc
Q 006624 411 SILIDGFCKTNRVEKAHLLLEEMEEKG---FP----PCPAAYCSLINGYGKAKRYEAANELFLELKEYC----G---CSS 476 (638)
Q Consensus 411 ~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~---~~~ 476 (638)
+.+...++..+++++|..+++...+.- +. .-..+++.+...|...|++++|.+++++++... . .-.
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 556677888899999998888654320 11 112356666666666666666666666655421 1 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 477 ARVYAVMIKHFGKCGRLSDAVDLFNE 502 (638)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~ 502 (638)
...++.|...|.+.+++++|.++|.+
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHH
Confidence 23344444555555555555555544
No 75
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=6e-12 Score=83.80 Aligned_cols=50 Identities=40% Similarity=0.747 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 006624 580 PDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGK 629 (638)
Q Consensus 580 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 629 (638)
||..+|++++++|++.|++++|.++|++|.+.|+.||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777764
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=1e-09 Score=98.49 Aligned_cols=205 Identities=13% Similarity=0.052 Sum_probs=171.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHH
Q 006624 156 CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYS 235 (638)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 235 (638)
+..|-.--+.+..+|.+.|.+.+|.+.|+.-.+. .|-++||..|.++|.+-.+++.|+.+|.+-++..+ -|+....
T Consensus 219 ~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP--~~VT~l~ 294 (478)
T KOG1129|consen 219 CTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP--FDVTYLL 294 (478)
T ss_pred chHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC--chhhhhh
Confidence 3344445578889999999999999999998877 67889999999999999999999999999988664 4555556
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006624 236 ALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAG 315 (638)
Q Consensus 236 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 315 (638)
-+.+.+-..++.++|.++++...+.. +.++.....+...|.-.+++|-|+..++.+++.|+. +...|+.+.-+|.-.+
T Consensus 295 g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaq 372 (478)
T KOG1129|consen 295 GQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQ 372 (478)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhc
Confidence 67788888999999999999998863 446777778888899999999999999999999987 8889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 006624 316 RVEDAYGLFMNMLKEGCKPD--IVLINNLINVLGRAGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 316 ~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 366 (638)
+++-++..|++.+..-..|+ ..+|..+.......||+..|.+.|+-....+
T Consensus 373 Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 373 QIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred chhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 99999999999887654444 3467778888888899999998888776543
No 77
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=8.8e-07 Score=91.43 Aligned_cols=211 Identities=18% Similarity=0.212 Sum_probs=135.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHhhHHHH---------------------------HHHHHccC
Q 006624 406 SPFTYSILIDGFCKTNRVEKAHLLLEEMEEKG--FPPCPAAYCSL---------------------------INGYGKAK 456 (638)
Q Consensus 406 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l---------------------------i~~~~~~g 456 (638)
|+...+.-+.++...+-..+-+++++++.-.+ +..+...-+.| .......+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~ 1062 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQ 1062 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhh
Confidence 34444555666667777777777777765321 11111111111 12233344
Q ss_pred CHHHHHHHHHHHHHc---------------------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 006624 457 RYEAANELFLELKEY---------------------CGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTY 515 (638)
Q Consensus 457 ~~~~A~~~~~~~~~~---------------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 515 (638)
-+++|..+|+..... .....+.+|+.+..+-...|...+|++-|-+. .|...|
T Consensus 1063 LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y 1136 (1666)
T KOG0985|consen 1063 LYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNY 1136 (1666)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHH
Confidence 567777777653211 01234678999999999999999998777543 366789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH-----------
Q 006624 516 NALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVS----------- 584 (638)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----------- 584 (638)
.-++....+.|.+++-..++....+..-.|...+ .|+-+|++.++..+-.+++. .||...
T Consensus 1137 ~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~ 1207 (1666)
T KOG0985|consen 1137 LEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEE 1207 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhh
Confidence 9999999999999999999988888777777665 57778888887766554432 234333
Q ss_pred ---------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCccCCC
Q 006624 585 ---------------YNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDEDRNPT 637 (638)
Q Consensus 585 ---------------~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 637 (638)
|..|...+...|.++.|...-++. -+..||..+--+|...++++.|+
T Consensus 1208 ~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ 1269 (1666)
T KOG0985|consen 1208 KMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ 1269 (1666)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH
Confidence 444444455555555554433333 25568999999999888888775
No 78
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=1.5e-11 Score=81.80 Aligned_cols=49 Identities=45% Similarity=0.813 Sum_probs=23.5
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006624 510 PDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLA 558 (638)
Q Consensus 510 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 558 (638)
||..+||+++++|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.26 E-value=6.3e-09 Score=103.69 Aligned_cols=245 Identities=19% Similarity=0.190 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhC-----CC-CCCHHH-HHHHHHHHHhcCCHhHHHHHHHHHHhC-----CCC
Q 006624 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSR-----KC-KPTANT-YNSMILMLMQEGYYEKIHELYNEMCNE-----GNC 227 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~ 227 (638)
..++..+...|..+|++++|..++++..+. |. .|.+.+ .+.+...|...+++++|..+|+++... |..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345556777777788888888777766543 21 223332 334666777777777777777776543 222
Q ss_pred CCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHC-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---C
Q 006624 228 FPDT-VTYSALISAFGKLGRDISAIRLFDEMKEN-----GL-QPTA-KIYTTLVSIYFKLGEVEKALGLVQEMKGK---G 296 (638)
Q Consensus 228 ~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~ 296 (638)
.|.+ .+++.|...|.+.|++++|...+++..+. |. .|.+ ..++.++..+...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2322 45666667777777777777766655432 11 1121 23455666666677777777766654432 1
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C--CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 006624 297 CAL----TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG----C--KP-DIVLINNLINVLGRAGRLEDALKLFNKMEAL 365 (638)
Q Consensus 297 ~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 365 (638)
+.+ -..+++.|...|.+.|++++|.++|++++... - .+ ....++.+...|.+.+.+.+|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~- 437 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD- 437 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH-
Confidence 111 13456666777777777777777776665421 1 11 123455566666666666666666665432
Q ss_pred CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 366 QCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEME 434 (638)
Q Consensus 366 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 434 (638)
+. .....+.+-...+|..|...|.+.|+++.|.++.+.+.
T Consensus 438 ----------------------------i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 ----------------------------IM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred ----------------------------HH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 11 11111222234678888888889999999888887765
No 80
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=7.9e-07 Score=89.82 Aligned_cols=454 Identities=14% Similarity=0.173 Sum_probs=267.3
Q ss_pred ccchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC---------CCCCCHHHHHHHHHHHHh
Q 006624 102 DVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRS---------TCVMGPSVLSEIVNILGK 172 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~ 172 (638)
.++.+.|.+-.+.+ .+..+|..|.+.+.+.++.|-|.-.+-.|... ...++ ..=..+.....+
T Consensus 741 iG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred eccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 34556664444432 25679999999999999999888777666432 01111 222334444567
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 006624 173 AKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIR 252 (638)
Q Consensus 173 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 252 (638)
.|..++|+.+|.+-+.. ..|=..|-..|.+++|+++-+.=-+. .=..||......+-..++.+.|++
T Consensus 813 LgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi----HLr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI----HLRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce----ehhhhHHHHHHHHHhhccHHHHHH
Confidence 89999999999998764 44556677789999999987653332 223466666777777788888888
Q ss_pred HHHHH----------HHCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006624 253 LFDEM----------KENG---------LQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR 313 (638)
Q Consensus 253 ~~~~m----------~~~g---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 313 (638)
.|++. .... -..|...|......+-..|+.+.|+.+|..... |-++++..|-
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~ 950 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCI 950 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEee
Confidence 87743 2111 112445555555666677888888888876543 5566777778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHH---
Q 006624 314 AGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASE--- 390 (638)
Q Consensus 314 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a--- 390 (638)
+|+.++|-++-++- -|......+.+.|-..|++.+|..+|-+... +...|+. |+.++..+.
T Consensus 951 qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRl-cKEnd~~d~L~n 1014 (1416)
T KOG3617|consen 951 QGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRL-CKENDMKDRLAN 1014 (1416)
T ss_pred ccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHH-HHhcCHHHHHHH
Confidence 88888888777653 2667777889999999999999998887643 2222222 222222211
Q ss_pred ------------HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHhC--CCCCCHhhHHHH
Q 006624 391 ------------ASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEE--------MEEK--GFPPCPAAYCSL 448 (638)
Q Consensus 391 ------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--------~~~~--~~~~~~~~~~~l 448 (638)
+..+|++.. . -+...+..|-+.|.+.+|+++--+ ++.. .-..|+...+..
T Consensus 1015 lal~s~~~d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEELG---G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred HHhhcCchhHHHHHHHHHHcc---h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 122222221 0 112234456677777777665322 1222 223466677777
Q ss_pred HHHHHccCCHHHHHHHHHHHHHc----------C----------------CCCc----HHHHHHHHHHHHhcCCHHHHHH
Q 006624 449 INGYGKAKRYEAANELFLELKEY----------C----------------GCSS----ARVYAVMIKHFGKCGRLSDAVD 498 (638)
Q Consensus 449 i~~~~~~g~~~~A~~~~~~~~~~----------~----------------~~~~----~~~~~~li~~~~~~g~~~~A~~ 498 (638)
.+.++...++++|..++....+. + ..|+ ..+...+...+.++|.+..|-+
T Consensus 1087 adFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtK 1166 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATK 1166 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 77777777777777766544321 1 1122 2345566677777887776665
Q ss_pred HHHH----------HHhCCC-----------------------------CC------CHhh-------HHHHHHHHH---
Q 006624 499 LFNE----------MKKLRC-----------------------------KP------DVYT-------YNALMSGMV--- 523 (638)
Q Consensus 499 ~~~~----------m~~~~~-----------------------------~p------~~~~-------~~~l~~~~~--- 523 (638)
-|.+ +.+.|- .. |+.| +..|...|.
T Consensus 1167 KfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cA 1246 (1416)
T KOG3617|consen 1167 KFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCA 1246 (1416)
T ss_pred HHhhhhhHHHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHH
Confidence 5543 222220 01 1111 122222221
Q ss_pred H------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-----------cCCHHHHHHHHHHhhhCCCCC
Q 006624 524 R------------AGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAK-----------SGGPKRAMEIFTKMQHSEIKP 580 (638)
Q Consensus 524 ~------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-----------~g~~~~A~~~~~~m~~~~~~p 580 (638)
+ .|-.++|...+.++.++. .....++.|-.-..+ ..|..+.++-.+.|.+....|
T Consensus 1247 qiEiee~q~ydKa~gAl~eA~kCl~ka~~k~--~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld 1324 (1416)
T KOG3617|consen 1247 QIEIEELQTYDKAMGALEEAAKCLLKAEQKN--MSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILD 1324 (1416)
T ss_pred HhhHHHHhhhhHHhHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCC
Confidence 1 233344555555555432 112223333221111 124455555555565544444
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 581 D----AVSYNTILGCLSRAGMFEEAARLMKDMNAK 611 (638)
Q Consensus 581 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 611 (638)
| ...|..+|..+....++..|.+.+++|..+
T Consensus 1325 ~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1325 DIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred CcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 3 457888999999999999999999999876
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.24 E-value=1.1e-08 Score=87.81 Aligned_cols=198 Identities=11% Similarity=-0.008 Sum_probs=137.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 006624 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (638)
+...+.-.|.+.|++..|..-+++..+..+. +..+|..+...|.+.|+.+.|.+.|++.++..+ .+....|.....+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p--~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAP--NNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC--CccchhhhhhHHH
Confidence 4455666677777777777777777776433 566777777777777777777777777777665 5666677777777
Q ss_pred HccCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006624 242 GKLGRDISAIRLFDEMKENGL-QPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDA 320 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 320 (638)
|..|++++|.+.|++....-. .--..+|..+.-+..+.|+.+.|.+.|++.++..+. ...+.-.+.....+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHH
Confidence 777777777777777776421 112456777777777777777777777777776554 445566667777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 321 YGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 321 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 364 (638)
..+++.....+. ++....-..|..-...|+.+.+.+.=..+..
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 777777776655 6777766677777777777766665555544
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.22 E-value=1.6e-08 Score=86.82 Aligned_cols=208 Identities=18% Similarity=0.058 Sum_probs=175.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006624 409 TYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFG 488 (638)
Q Consensus 409 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 488 (638)
+...+.-.|.+.|+...|..-+++.++.+ |.+..++..+...|.+.|+.+.|.+.|+++... .+.+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL-APNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-CCCccchhhhhhHHHH
Confidence 34557778999999999999999999987 788889999999999999999999999999987 5567888999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006624 489 KCGRLSDAVDLFNEMKKLRCKP-DVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAM 567 (638)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 567 (638)
..|++++|...|++....-.-+ -..+|..+.-+..+.|+.+.|.+.|++.++... -...+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHH
Confidence 9999999999999998752111 256888888888999999999999999998642 24567778889999999999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 006624 568 EIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSS 622 (638)
Q Consensus 568 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 622 (638)
.++++....+. ++..+.-..|+.-.+.|+.+.|.++=..+.+. -|...-|..
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~ 245 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQT 245 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHh
Confidence 99999988665 88888888899999999999998887777643 455544443
No 83
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.22 E-value=1.9e-07 Score=95.22 Aligned_cols=478 Identities=13% Similarity=0.075 Sum_probs=255.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-------CCCC--------------CCHHHHHHHHHHHHhCCCHHHHH
Q 006624 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVR-------STCV--------------MGPSVLSEIVNILGKAKMVNKAL 180 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~ 180 (638)
.|.+.+|..+..+|.+.|+......+=+++.. .|+. .....-..++....-.|-++.++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999998753222222221 1111 11111122334445556667777
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006624 181 SIFYQIKSRKCKPTANTYNSMILMLMQEG-YYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
++...++..... .+... .++-..... .+++-..+...... .|+..+|..+++.-...|+.+.|..++.+|.+
T Consensus 160 kll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e----~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 160 KLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE----APTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc----CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 776666544211 11111 233332222 23444444333333 29999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006624 260 NGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLI 339 (638)
Q Consensus 260 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 339 (638)
.|++.+..-|-.|+-+ .++...+..+++.|.+.|+.|+..|+...+-.+..+|....+.. |. +....+
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e--------~s-q~~hg~ 300 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE--------GS-QLAHGF 300 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc--------cc-chhhhh
Confidence 9999998877777766 88899999999999999999999999988777777665322211 11 122222
Q ss_pred HHHHHHHHccC-----CHH-----HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC--C-CCC
Q 006624 340 NNLINVLGRAG-----RLE-----DALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANG--V-LPS 406 (638)
Q Consensus 340 ~~l~~~~~~~g-----~~~-----~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~-~~~ 406 (638)
++-+..-.-.| +.+ -....+.+..-.|.......|...++... .|...+. .++-..+...- . ..+
T Consensus 301 tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~h-Qgk~e~v-eqlvg~l~npt~r~s~~~ 378 (1088)
T KOG4318|consen 301 TAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRH-QGKGEEV-EQLVGQLLNPTLRDSGQN 378 (1088)
T ss_pred hHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHH-cCCCchH-HHHHhhhcCCccccCcch
Confidence 22222222222 111 11111111111233333344444443332 2222222 33323222110 0 112
Q ss_pred HHHHHHHHHHHHhc----------------------CCHHHHHHHHHHHHh------------C----CCCCC-------
Q 006624 407 PFTYSILIDGFCKT----------------------NRVEKAHLLLEEMEE------------K----GFPPC------- 441 (638)
Q Consensus 407 ~~~~~~l~~~~~~~----------------------~~~~~A~~~~~~~~~------------~----~~~~~------- 441 (638)
+..|..++.-|.+. .+..+..+++..... . ...+=
T Consensus 379 V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~i 458 (1088)
T KOG4318|consen 379 VDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLI 458 (1088)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHH
Confidence 22333333222221 111111121111100 0 00000
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHhhHHHHH
Q 006624 442 PAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL--RCKPDVYTYNALM 519 (638)
Q Consensus 442 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~ 519 (638)
...-+.++..+++.-+..++...-+.....-+ ...|..||+-++...+.+.|..+.++.... .+..|..-+..+.
T Consensus 459 rdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~ 535 (1088)
T KOG4318|consen 459 RDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQ 535 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHH
Confidence 00122333344444444444433333322211 256777788788888888888877776542 1233445567777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 006624 520 SGMVRAGMIDDAYSLLRRMEEDG-CVPD-INSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGM 597 (638)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 597 (638)
+.+.+.+....+..++.++.+.- ..|+ ..++--+++.....|+.+.-.++++-+...|+.-+ .-++....+.++
T Consensus 536 dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd 611 (1088)
T KOG4318|consen 536 DLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDD 611 (1088)
T ss_pred HHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccc
Confidence 77778888888888887777641 1222 33444556666777787777777777776665432 334444566777
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 006624 598 FEEAARLMKDMNAKGFEYDQITYSSILEAVG 628 (638)
Q Consensus 598 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 628 (638)
...|.++.+.-... ++|.+.....+.+.+.
T Consensus 612 ~s~a~ea~e~~~qk-yk~~P~~~e~lcrlv~ 641 (1088)
T KOG4318|consen 612 QSAAQEAPEPEEQK-YKPYPKDLEGLCRLVY 641 (1088)
T ss_pred hhhhhhcchHHHHH-hcCChHHHHHHHHHHH
Confidence 77777777665543 5666655555555444
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.21 E-value=2.2e-08 Score=95.80 Aligned_cols=197 Identities=14% Similarity=0.065 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+..++.+.|++++|...|++.++.. +.++..|+.+...+...|++++|...|++..+..+. +..+|..+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3557777777888888888888888877753 456777888888888888888888888888776433 56677777777
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006624 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
+...|++++|++.|+...+..+. +. ....+.......++.++|.+.|++..... .|+...+ .+... ..|+...
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P~--~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~~~--~lg~~~~ 214 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDPN--DP-YRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NIVEF--YLGKISE 214 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC--CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HHHHH--HccCCCH
Confidence 88888888888888888776542 22 22222223345567788888876655432 2222221 22222 2344333
Q ss_pred HHHHHHHHHh---CCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006624 285 ALGLVQEMKG---KGCA---LTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 285 A~~~~~~m~~---~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
+ +.++.+.+ ..+. .....|..+...+.+.|++++|...|++..+.+
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2 23333332 1110 123456666677777777777777777776654
No 85
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.21 E-value=2.7e-07 Score=95.17 Aligned_cols=464 Identities=10% Similarity=0.001 Sum_probs=248.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKC-KPTANTYNSMIL 203 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~ 203 (638)
...|..|...|..-.+...|.+.|+.....+ ..+......+...|++..+++.|..+.-..-+... ..-...|..+.-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 4578888888888778888888888887754 45667788888999999999999988544433311 112223444566
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCH
Q 006624 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTA-KIYTTLVSIYFKLGEV 282 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~ 282 (638)
.|.+.++...|+..|+...+..| .|...|..++.+|...|++..|+++|.+.... .|+. ..-.-..-..+..|.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~dP--kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDP--KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCc--hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhH
Confidence 67888999999999999999876 78889999999999999999999999988874 3432 2223334456678999
Q ss_pred HHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHcc
Q 006624 283 EKALGLVQEMKGKG------CALTVYTYTELIKGLGRAGRVEDAYGLFMNMLK-------EGCKPDIVLINNLINVLGRA 349 (638)
Q Consensus 283 ~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~p~~~~~~~l~~~~~~~ 349 (638)
.+|++.++...... ..--..++..+...+.-.|-...|..+++..++ +...-+...|..+.
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as------ 720 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS------ 720 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh------
Confidence 99999888876431 111223333333344444444455555544433 21111222222222
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCh---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------
Q 006624 350 GRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAP---ASEASAWFEKMKANGVLPSPFTYSILIDGFCK------- 419 (638)
Q Consensus 350 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 419 (638)
.|..+|-... .. .|+......+..-.-..+.. +-.....-..........+..+|..++..|.+
T Consensus 721 ----dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~e 794 (1238)
T KOG1127|consen 721 ----DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGE 794 (1238)
T ss_pred ----HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCC
Confidence 2222332222 00 12222222222111111111 00000000000000111123344444444333
Q ss_pred -cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 006624 420 -TNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVD 498 (638)
Q Consensus 420 -~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 498 (638)
..+...|+..+.+..+.. ..+..+|+.|.-. ...|++.-|...|-+.... .+.+..+|..+.-.+....+++-|..
T Consensus 795 t~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~ 871 (1238)
T KOG1127|consen 795 TMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEP 871 (1238)
T ss_pred cchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhH
Confidence 122345666666666553 4455556555544 5556666666666555443 33445566666666667777777777
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH--HHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006624 499 LFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRR--MEE--DGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQ 574 (638)
Q Consensus 499 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~--~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 574 (638)
.|...+... +.|...|-.........|+.-++..+|.. ... .|-.|+..-|-.....-...|+.++-+...+++.
T Consensus 872 af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~ 950 (1238)
T KOG1127|consen 872 AFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKIS 950 (1238)
T ss_pred HHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhh
Confidence 777766642 23344454443344455666666666654 111 1223333333222222334444444333333322
Q ss_pred h---------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 575 H---------SEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 575 ~---------~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 609 (638)
. .+.+-+...|.......-+.+.+.+|.++..+..
T Consensus 951 sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 951 SASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred hhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 1 0222234456565556666666666666655543
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.19 E-value=2e-08 Score=96.08 Aligned_cols=233 Identities=15% Similarity=0.054 Sum_probs=166.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCC-C--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 006624 133 RCLDETRMIGVMWKSIQDMVRSTC-V--MGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEG 209 (638)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~-~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 209 (638)
..+...+..+.++..+.+++.... . -....|......+.+.|+.++|...|.+..+..+. +...|+.+...+...|
T Consensus 34 ~~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g 112 (296)
T PRK11189 34 VPLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAG 112 (296)
T ss_pred cccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCC
Confidence 344445666778888888775421 1 22456888888999999999999999999988654 7899999999999999
Q ss_pred CHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006624 210 YYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLV 289 (638)
Q Consensus 210 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 289 (638)
++++|.+.|++.++..+ .+..+|..+...+...|++++|.+.|+...+.. |+..............+++++|.+.+
T Consensus 113 ~~~~A~~~~~~Al~l~P--~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l 188 (296)
T PRK11189 113 NFDAAYEAFDSVLELDP--TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENL 188 (296)
T ss_pred CHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHH
Confidence 99999999999999775 567788889999999999999999999999864 44332222233345678899999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006624 290 QEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE---GC---KPDIVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 290 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 363 (638)
++..... .++...+ .+ .....|+..++ ..++.+.+. .+ +....+|..+...+.+.|++++|...|++..
T Consensus 189 ~~~~~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al 263 (296)
T PRK11189 189 KQRYEKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL 263 (296)
T ss_pred HHHHhhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7765432 2232222 22 23345555544 344444432 11 1134578899999999999999999999998
Q ss_pred HCCCCCCHhHHHH
Q 006624 364 ALQCKPNVVTYNT 376 (638)
Q Consensus 364 ~~~~~p~~~~~~~ 376 (638)
+.++ ||.+.+..
T Consensus 264 ~~~~-~~~~e~~~ 275 (296)
T PRK11189 264 ANNV-YNFVEHRY 275 (296)
T ss_pred HhCC-chHHHHHH
Confidence 7552 34444433
No 87
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=4.3e-07 Score=80.90 Aligned_cols=292 Identities=13% Similarity=0.092 Sum_probs=197.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHH-HHHHH
Q 006624 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNS-MILML 205 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~ 205 (638)
-+.+.+..+.+..++.+|++++....... +.+....+.+..+|....++..|...|+++-.. .|...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 35667777788899999999998887753 446777888889999999999999999999776 455555543 34667
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHH--HHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006624 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALI--SAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 283 (638)
.+.+.+.+|+.+...|... ++...-..-+ ......+++..+..++++....| +..+.+.......+.|+++
T Consensus 89 Y~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 7899999999999888653 2222222222 23345788888999998877543 5666677777788999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------CCH--------------
Q 006624 284 KALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK-------------PDI-------------- 336 (638)
Q Consensus 284 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------------p~~-------------- 336 (638)
.|.+-|+...+.+--.....|+..+ +..+.|+++.|++...+++++|+. ||+
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 9999999988865443566777655 455788999999999999987754 121
Q ss_pred -HHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006624 337 -VLINNLINVLGRAGRLEDALKLFNKMEAL-QCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILI 414 (638)
Q Consensus 337 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 414 (638)
..+|.-...+.+.|+++.|.+.+-.|..+ ....|++|...+.-.- ..+++.+. ..-+.-+.... +-...||..++
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g-~~KLqFLL~~n-PfP~ETFANlL 317 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEG-FEKLQFLLQQN-PFPPETFANLL 317 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCcccc-HHHHHHHHhcC-CCChHHHHHHH
Confidence 12343344556778888888887777432 2334556554443211 11222222 22223333332 23456777777
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 006624 415 DGFCKTNRVEKAHLLLEE 432 (638)
Q Consensus 415 ~~~~~~~~~~~A~~~~~~ 432 (638)
-.||++.-++.|-.++.+
T Consensus 318 llyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHhhhHHHhHHHHHHhh
Confidence 778888777777777654
No 88
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.16 E-value=3.5e-06 Score=81.53 Aligned_cols=439 Identities=13% Similarity=0.141 Sum_probs=208.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 006624 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
+-|..+|+.||+-+..+ -++++...+++++.. .+..+..|...|..-.+..+++....+|.+.... ..+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 45889999999988777 999999999999884 4567788999999999999999999999998776 3467777766
Q ss_pred HHHHHh-cCCHhH----HHHHHHHHHhC-CCCCCCHHHHHHHHHHH---------HccCChHHHHHHHHHHHHCCCCCCH
Q 006624 202 ILMLMQ-EGYYEK----IHELYNEMCNE-GNCFPDTVTYSALISAF---------GKLGRDISAIRLFDEMKENGLQPTA 266 (638)
Q Consensus 202 ~~~~~~-~g~~~~----A~~~~~~~~~~-~~~~~~~~~~~~l~~~~---------~~~g~~~~A~~~~~~m~~~g~~~~~ 266 (638)
+.---+ .|+... -.+.|+-.... |........|+..+..+ ....+++...+++.++...-
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP----- 167 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP----- 167 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc-----
Confidence 653322 222222 22333333322 21111222233333221 12223444444555444321
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHH
Q 006624 267 KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLK--EGCKPDIVLINNLIN 344 (638)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~p~~~~~~~l~~ 344 (638)
.+++++-.+=|....+. .|..|-..++. -+...+..|.++++++.. .|...+..+
T Consensus 168 ------------m~nlEkLW~DY~~fE~~---IN~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~------ 224 (656)
T KOG1914|consen 168 ------------MHNLEKLWKDYEAFEQE---INIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPA------ 224 (656)
T ss_pred ------------cccHHHHHHHHHHHHHH---HHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCC------
Confidence 11222222222222111 12222222211 123344555555555543 121111000
Q ss_pred HHHccCCHH--HHHHHHHHHHH----CCCC-CC--------HhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHH
Q 006624 345 VLGRAGRLE--DALKLFNKMEA----LQCK-PN--------VVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFT 409 (638)
Q Consensus 345 ~~~~~g~~~--~A~~~~~~~~~----~~~~-p~--------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 409 (638)
.-..|--+ ...+++....+ .+.. -+ ..+|+..+..+.-..+..-.+..++...
T Consensus 225 -vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~----------- 292 (656)
T KOG1914|consen 225 -VPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEI----------- 292 (656)
T ss_pred -CCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----------
Confidence 00000000 01111111100 0000 00 0011111111000000000000000000
Q ss_pred HHHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc---CCHHHHHHHHHHHHHcCCCCcHHH
Q 006624 410 YSILIDGFCKTNR-------VEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKA---KRYEAANELFLELKEYCGCSSARV 479 (638)
Q Consensus 410 ~~~l~~~~~~~~~-------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~ 479 (638)
-+.+...|+ .+++..+++..++.-...+...|..+.+.--.. ++.+.....++++.......-.-+
T Consensus 293 ----s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv 368 (656)
T KOG1914|consen 293 ----SDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLV 368 (656)
T ss_pred ----hHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCcee
Confidence 011222222 334445555444322222333333333221111 124555555555555433333445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006624 480 YAVMIKHFGKCGRLSDAVDLFNEMKKLRCKP-DVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLA 558 (638)
Q Consensus 480 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 558 (638)
|...++.-.+..-++.|..+|.+..+.+..+ +++.+++++.-+| .++.+-|.++|+--+++ ..-+..--...++-+.
T Consensus 369 ~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~ 446 (656)
T KOG1914|consen 369 YCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLS 446 (656)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHH
Confidence 6666666666666777777777776665544 5566666665544 55667777777655543 1222333344556666
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 559 KSGGPKRAMEIFTKMQHSEIKPD--AVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 559 ~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
..++-..|..+|++....++.|| ..+|..++.-=..-|+.+.+.++-+++..
T Consensus 447 ~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 447 HLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 66777777777777766644444 35677777766677777777776666553
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.15 E-value=4e-07 Score=90.75 Aligned_cols=197 Identities=12% Similarity=-0.007 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCC-CCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006624 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKC-KPTA-NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
.+..+...+...|+.+++...+.+..+... .++. .........+...|++++|.+.+++.....+ .|...+.. ..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P--~~~~a~~~-~~ 84 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP--RDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHH-hH
Confidence 344444444455555555444444433211 1111 1122223344556666666666666665543 23333331 11
Q ss_pred HHH----ccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006624 240 AFG----KLGRDISAIRLFDEMKENGLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRA 314 (638)
Q Consensus 240 ~~~----~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 314 (638)
.+. ..|..+.+.+.++.. ....| .......+...+...|++++|.+.+++..+..+. +...+..+...+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHc
Confidence 222 223334444444331 11122 2333444555666677777777777777666543 455666666677777
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCH--HHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 315 GRVEDAYGLFMNMLKEGCK-PDI--VLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 315 g~~~~A~~~~~~~~~~~~~-p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 364 (638)
|++++|...+++....... |+. ..|..+...+...|++++|..++++...
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 7777777777766654221 222 2344566667777777777777777643
No 90
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=4.4e-06 Score=78.14 Aligned_cols=303 Identities=14% Similarity=0.051 Sum_probs=178.6
Q ss_pred CCHHHHHHHHHHHHcc--CChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006624 229 PDTVTYSALISAFGKL--GRDISAIRLFDEMKEN-GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYT 305 (638)
Q Consensus 229 ~~~~~~~~l~~~~~~~--g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 305 (638)
|+..+...++.+++.. ++...|.+.+--+... -++-|+.....+...+...|+.++|+..|++....++. +.....
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD 270 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMD 270 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHH
Confidence 4444555566655543 4444555544444332 24557778888899999999999999999888765332 222333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHH-HHHHhc
Q 006624 306 ELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVI-KSLFES 384 (638)
Q Consensus 306 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll-~~~~~~ 384 (638)
...-.+.+.|+++.-..+...+....- -....|-.-+.......++..|+.+-++....+ |+.+.-..+- ..+...
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhc
Confidence 334455677888777777766665421 122333333445556778888888888776633 3333332222 233444
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH-HHHH-ccCCHHHHH
Q 006624 385 KAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLI-NGYG-KAKRYEAAN 462 (638)
Q Consensus 385 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~~A~ 462 (638)
+++.++ .-.|+...... +.+...|.-|+.+|...|++.+|..+-++..+. ++.+..+.+.+. ..+. ...--++|.
T Consensus 348 ~R~~~A-~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 348 ERHTQA-VIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred cchHHH-HHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 555555 44445544331 346677888888888888888877776665543 244455555442 2222 122346666
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006624 463 ELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED 541 (638)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 541 (638)
++++...+. -|.-....+.+...+...|+.++++.+++..... .||....+.|.+.+...+.+.+|.+.|..++..
T Consensus 425 kf~ek~L~~-~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 425 KFAEKSLKI-NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhhhcc-CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 776666653 1122344555666666677777777777766653 467777777777777777777777777766664
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=3.2e-06 Score=81.94 Aligned_cols=105 Identities=14% Similarity=0.091 Sum_probs=82.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCC
Q 006624 132 IRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT-ANTYNSMILMLMQEGY 210 (638)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 210 (638)
.++....|+++.|+.+|.+.+... +++...|+.-..+|...|++++|++=-.+-.+. .|+ +..|+....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 345667889999999998888764 447777888888899999999888877666665 344 4678888888888899
Q ss_pred HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 006624 211 YEKIHELYNEMCNEGNCFPDTVTYSALISAF 241 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (638)
+++|+.-|.+-++..+ .+...++.+..++
T Consensus 86 ~~eA~~ay~~GL~~d~--~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDP--SNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHHhhcCC--chHHHHHhHHHhh
Confidence 9999999998888765 5667777777776
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=2.7e-07 Score=82.15 Aligned_cols=316 Identities=14% Similarity=0.087 Sum_probs=196.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH-HHHH
Q 006624 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA-LISA 240 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-l~~~ 240 (638)
-+.+++..+.+..++++|++++..-.++.++ +......+...|....++..|.+.|+++.... |...-|.. -...
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~---P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH---PELEQYRLYQAQS 87 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---hHHHHHHHHHHHH
Confidence 4566777778889999999999988887433 77788889999999999999999999998755 55555543 3566
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006624 241 FGKLGRDISAIRLFDEMKENGLQPTAK--IYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVE 318 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 318 (638)
+.+.+.+.+|+++...|.+. ++.. +...-.......+++..+..++++....| +..+.+...-...+.|+++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 77889999999999888763 2222 22222233456788889998888877543 4555555555667999999
Q ss_pred HHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHH----HHHHHHHHhcCChHHHHHH
Q 006624 319 DAYGLFMNMLKE-GCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTY----NTVIKSLFESKAPASEASA 393 (638)
Q Consensus 319 ~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~----~~ll~~~~~~~~~~~a~~~ 393 (638)
+|.+-|+...+- |.. ....||..+.. .+.|+++.|++...++.++|++-.+..- ...+. .-..|+...
T Consensus 162 aAvqkFqaAlqvsGyq-pllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD-vrsvgNt~~---- 234 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQ-PLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGID-VRSVGNTLV---- 234 (459)
T ss_pred HHHHHHHHHHhhcCCC-chhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc-hhcccchHH----
Confidence 999999999885 454 56677765544 5678999999999999988765211100 00000 000011000
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 006624 394 WFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEK-GFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYC 472 (638)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 472 (638)
|..++ =...+|.-...+.+.++++.|.+-+-.|--+ ....|+.|...+.-.- -.+++.+..+-+.-+.+..
T Consensus 235 ----lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 235 ----LHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN 306 (459)
T ss_pred ----HHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC
Confidence 00000 1123444444566667777776666665422 1234555554432211 1233334444444444442
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 473 GCSSARVYAVMIKHFGKCGRLSDAVDLFNEM 503 (638)
Q Consensus 473 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 503 (638)
. -...++..++-.||+..-++-|-.++.+-
T Consensus 307 P-fP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 307 P-FPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred C-CChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 2 34556666666677776666666666543
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2e-06 Score=83.30 Aligned_cols=383 Identities=13% Similarity=0.045 Sum_probs=224.0
Q ss_pred ccchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHH
Q 006624 102 DVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG-PSVLSEIVNILGKAKMVNKAL 180 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 180 (638)
.++.+.|+..|.-+.... ++|.+.|..-..+|...|+|++|.+=-..-++. .|+ +..|+....++.-.|++++|+
T Consensus 15 ~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHH
Confidence 367789999998887666 668899999999999999999998877766663 344 568999999999999999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHH---HHHHHHHHhCCCC--CCCHHHHHHHHHHHHcc----------C
Q 006624 181 SIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKI---HELYNEMCNEGNC--FPDTVTYSALISAFGKL----------G 245 (638)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~----------g 245 (638)
.-|.+-.+.... +...++-+..++.......+. -.++..+...... ......|..++..+-+. .
T Consensus 91 ~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~ 169 (539)
T KOG0548|consen 91 LAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDP 169 (539)
T ss_pred HHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccH
Confidence 999999887443 667777787777211100000 0011111100000 00011122222221110 0
Q ss_pred ChHHHHHHHHH-----HHHCC-------CCC------------C----------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 246 RDISAIRLFDE-----MKENG-------LQP------------T----------AKIYTTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 246 ~~~~A~~~~~~-----m~~~g-------~~~------------~----------~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (638)
++..|.-.+.. +...| ..| | ..-...+.+...+..+++.|++-+..
T Consensus 170 r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~ 249 (539)
T KOG0548|consen 170 RLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAK 249 (539)
T ss_pred HHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 11111111100 00000 111 0 11234566677777788888888887
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHHccCCHHHHHHHHHHHHH
Q 006624 292 MKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLIN-------NLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 292 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-------~l~~~~~~~g~~~~A~~~~~~~~~ 364 (638)
..... -+...++....+|...|.+.++....+..++.|-. ...-|+ .+..+|.+.++++.|...|.+...
T Consensus 250 a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt 326 (539)
T KOG0548|consen 250 ALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT 326 (539)
T ss_pred HHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence 77765 36666667777788888888877777776665533 222222 233456666778888888887665
Q ss_pred CCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 006624 365 LQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSP-FTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPA 443 (638)
Q Consensus 365 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 443 (638)
....|+...-..... ++ ....+.. .-+.|.. .-...-...+.+.|++..|+..|.+++... |.|..
T Consensus 327 e~Rt~~~ls~lk~~E---------k~-~k~~e~~--a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~ 393 (539)
T KOG0548|consen 327 EHRTPDLLSKLKEAE---------KA-LKEAERK--AYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDAR 393 (539)
T ss_pred hhcCHHHHHHHHHHH---------HH-HHHHHHH--HhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhH
Confidence 444443322221111 11 1111111 1112221 111122556777788888888888887776 77777
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 444 AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL 506 (638)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (638)
.|+...-+|.+.|.+..|++-.+...+. .++....|..=..++....++++|++.|.+..+.
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL-~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIEL-DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7888888888888888777776666665 3344444555555555566777777777776664
No 94
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=3.2e-05 Score=80.44 Aligned_cols=282 Identities=17% Similarity=0.189 Sum_probs=118.8
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006624 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCF-PDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTL 272 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 272 (638)
|+..-...+.+++..+-+.+-+++++++.-.+... .+...-|.|+-...+. +.....++.+++.... .|+ +
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------I 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------H
Confidence 44445555566666666666666666655432211 1112223333333332 2223344444433221 111 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 006624 273 VSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRL 352 (638)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 352 (638)
.......+-+++|..+|++.-. +....+.||. ..+.++.|.++-++.- ....|..+..+-.+.|.+
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCch
Confidence 2333344445555555544321 2333333332 1233333333332221 233445555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 353 EDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEE 432 (638)
Q Consensus 353 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 432 (638)
.+|.+-|-+. .|+..|...+....+.|.+++- ..++....+..-.|... +.|+-+|++.++..+..+++
T Consensus 1121 ~dAieSyika------dDps~y~eVi~~a~~~~~~edL-v~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-- 1189 (1666)
T KOG0985|consen 1121 KDAIESYIKA------DDPSNYLEVIDVASRTGKYEDL-VKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-- 1189 (1666)
T ss_pred HHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHH-HHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh--
Confidence 5554444332 2344444555554444444443 33333333332223222 23444455555544433322
Q ss_pred HHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 006624 433 MEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDV 512 (638)
Q Consensus 433 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 512 (638)
.-|+......+.+-|...|.++.|.-+|... .-|..|...+...|+++.|...-++. .+.
T Consensus 1190 -----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ 1249 (1666)
T KOG0985|consen 1190 -----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NST 1249 (1666)
T ss_pred -----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cch
Confidence 1344444444455555555555544444332 22445555555555555555443332 234
Q ss_pred hhHHHHHHHHHHcCCH
Q 006624 513 YTYNALMSGMVRAGMI 528 (638)
Q Consensus 513 ~~~~~l~~~~~~~g~~ 528 (638)
.||.-+-.+|...+.+
T Consensus 1250 ktWK~VcfaCvd~~EF 1265 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEF 1265 (1666)
T ss_pred hHHHHHHHHHhchhhh
Confidence 4555555555444433
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.03 E-value=2.3e-06 Score=85.33 Aligned_cols=201 Identities=11% Similarity=-0.027 Sum_probs=135.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTC-VMGP-SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
....|..+...+...|+.+.+.+.+....+... ..+. .........+...|++++|...+++..+..+. +...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-
Confidence 355677777777777888887666666544321 2222 22223344567789999999999998876433 4444442
Q ss_pred HHHHHh----cCCHhHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006624 202 ILMLMQ----EGYYEKIHELYNEMCNEGNCFPD-TVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 202 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (638)
...+.. .+..+.+.+.++...... |+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~ 158 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPEN---PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVL 158 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcCC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 223333 344555555554421211 33 3445566778888999999999999999874 44567788889999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006624 277 FKLGEVEKALGLVQEMKGKGCA-LT--VYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~~~~-~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
...|++++|...+++....... ++ ...|..+...+...|++++|..++++....
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 9999999999999988775432 22 234567888899999999999999998654
No 96
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.03 E-value=8.1e-06 Score=84.72 Aligned_cols=443 Identities=9% Similarity=-0.005 Sum_probs=233.8
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 006624 141 IGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNE 220 (638)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 220 (638)
...+...|-+.++.. +.-...|..+...|....+...|.+.|.+.-+.+.. +...+-...+.|++...++.|.++.-.
T Consensus 474 ~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 444444444444422 111235666666666666677777777777665433 566667777777777777777777333
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006624 221 MCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT 300 (638)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 300 (638)
.-+..+...-...|....-.+...++...|..-|+...+.. +-|...|..+..+|...|++..|+++|.+....++. +
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~-s 629 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL-S 629 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-h
Confidence 33222111111223334445556677777777777776653 336677777777777777777777777776665332 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-------CCC
Q 006624 301 VYTYTELIKGLGRAGRVEDAYGLFMNMLKEG------CKPDIVLINNLINVLGRAGRLEDALKLFNKMEA-------LQC 367 (638)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~ 367 (638)
...---..-..+..|.+.+|+..+...+... ..--..++..+...+.-.|-..+|..++++-.+ ...
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 1111112233456777777777776665421 111122222233333333333444444433222 111
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH---H---HHHHHHHHHHhCCCCCC
Q 006624 368 KPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRV---E---KAHLLLEEMEEKGFPPC 441 (638)
Q Consensus 368 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~---~A~~~~~~~~~~~~~~~ 441 (638)
..+...|-.+-.+ ...|.... .. .|+.....++..-.-..+.. + -+.+.+-.-.+ ...+
T Consensus 710 ~~~~~~Wi~asda-----------c~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~ 774 (1238)
T KOG1127|consen 710 QSDRLQWIVASDA-----------CYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIH 774 (1238)
T ss_pred hhhHHHHHHHhHH-----------HHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hhhc
Confidence 1122222111111 11222222 11 22222222222212222222 1 11111111111 1223
Q ss_pred HhhHHHHHHHHHc-------cC-CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 006624 442 PAAYCSLINGYGK-------AK-RYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVY 513 (638)
Q Consensus 442 ~~~~~~li~~~~~-------~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 513 (638)
+.+|..++..|.+ .+ +...|...+....+. ...+...|+.|.-. ...|.+.-|...|-+-.... +....
T Consensus 775 ~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L-~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~ 851 (1238)
T KOG1127|consen 775 MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL-CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHC 851 (1238)
T ss_pred cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH-hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchh
Confidence 4445555444333 12 334677888877775 34566677777655 66677777777776655442 44677
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh--h--CCCCCCHHHHHHHH
Q 006624 514 TYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQ--H--SEIKPDAVSYNTIL 589 (638)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~--~--~~~~p~~~~~~~l~ 589 (638)
+|..+.-.+.+..+++.|...|...+... +.|...|-.........|+.-++..+|..-. . .|--|+..-|-+..
T Consensus 852 ~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~t 930 (1238)
T KOG1127|consen 852 QWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCAT 930 (1238)
T ss_pred heeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHH
Confidence 88888888889999999999999988753 2356667655555567788888888887722 1 24445555555554
Q ss_pred HHHHhcCCHHHHHHHHH
Q 006624 590 GCLSRAGMFEEAARLMK 606 (638)
Q Consensus 590 ~~~~~~g~~~~A~~~~~ 606 (638)
..-...|+.++-+...+
T Consensus 931 e~h~~Ng~~e~~I~t~~ 947 (1238)
T KOG1127|consen 931 EIHLQNGNIEESINTAR 947 (1238)
T ss_pred HHHHhccchHHHHHHhh
Confidence 55556677665544433
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.03 E-value=4e-06 Score=94.92 Aligned_cols=335 Identities=13% Similarity=0.042 Sum_probs=176.2
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------CCC--HHHHHHHHHHHH
Q 006624 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGC------ALT--VYTYTELIKGLG 312 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------~~~--~~~~~~li~~~~ 312 (638)
+...|+++.+...++.+.......+..........+...|++++|...+......-. .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344566665555555442111111222223334444556666666666655543200 001 111122233445
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC---C--CHhHHHHHHHHHHh
Q 006624 313 RAGRVEDAYGLFMNMLKEGCKPDI----VLINNLINVLGRAGRLEDALKLFNKMEALQCK---P--NVVTYNTVIKSLFE 383 (638)
Q Consensus 313 ~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p--~~~~~~~ll~~~~~ 383 (638)
..|++++|...+++..+.-...+. ...+.+...+...|++++|...+++....... + ....+..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 666677776666666542111111 23344555566667777666666665432110 1 11223333344455
Q ss_pred cCChHHHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--CHhhHHHHHHHH
Q 006624 384 SKAPASEASAWFEKMKA----NGVL--P-SPFTYSILIDGFCKTNRVEKAHLLLEEMEEKG--FPP--CPAAYCSLINGY 452 (638)
Q Consensus 384 ~~~~~~a~~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~~li~~~ 452 (638)
.|+..++ ...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 544 ~G~~~~A-~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 544 QGFLQAA-YETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred CCCHHHH-HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 5665555 333333222 2211 1 12334455566777789998888888765421 111 233444566677
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCc-HHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHH
Q 006624 453 GKAKRYEAANELFLELKEYCGCSS-ARVY-----AVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDV---YTYNALMSGMV 523 (638)
Q Consensus 453 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~ 523 (638)
...|+.++|.+.+..+........ ...+ ...+..+...|+.+.|...+............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 788899988888887754211110 0101 11224445578888888887765442111111 11345666777
Q ss_pred HcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 006624 524 RAGMIDDAYSLLRRMEED----GCVPD-INSHNIILNGLAKSGGPKRAMEIFTKMQHS 576 (638)
Q Consensus 524 ~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 576 (638)
..|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 889999998888887753 22222 345666777788899999999999888763
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.03 E-value=7.7e-06 Score=74.62 Aligned_cols=331 Identities=11% Similarity=0.041 Sum_probs=212.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHH-HHHH
Q 006624 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANT-YNSM 201 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l 201 (638)
.++.-...+.+.+..+|++.+|+.-|...+..+ +.+-.++..-...|...|+..-|+.=+.++.+. +||-.. -..-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 355566678888999999999999999887632 223334455566788889999999989888886 566443 2335
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006624 202 ILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE 281 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 281 (638)
...+.++|++++|..-|+..++..+ +..+ ...+..+.--.++-.. ....+..+...|+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~---s~~~---~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEP---SNGL---VLEAQSKLALIQEHWV----------------LVQQLKSASGSGD 170 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCC---Ccch---hHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCc
Confidence 5778899999999999999998764 2211 1111111111111111 1223344566788
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006624 282 VEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNK 361 (638)
Q Consensus 282 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 361 (638)
...|+.....+++..+- |...|..-..+|...|++..|+.-++...+..- -++.++..+...+...|+.+.++...++
T Consensus 171 ~~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred hhhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 88888888888887554 778888888889999999988887777766533 3666777777888888999888888888
Q ss_pred HHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006624 362 MEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPC 441 (638)
Q Consensus 362 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 441 (638)
..+.+ ||....-..-..+-+ +...++.| ......++|.++++-.+...+......
T Consensus 249 CLKld--pdHK~Cf~~YKklkK-------v~K~les~----------------e~~ie~~~~t~cle~ge~vlk~ep~~~ 303 (504)
T KOG0624|consen 249 CLKLD--PDHKLCFPFYKKLKK-------VVKSLESA----------------EQAIEEKHWTECLEAGEKVLKNEPEET 303 (504)
T ss_pred HHccC--cchhhHHHHHHHHHH-------HHHHHHHH----------------HHHHhhhhHHHHHHHHHHHHhcCCccc
Confidence 87744 665432221111100 01111111 223455667777777776665532212
Q ss_pred Hh---hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 442 PA---AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL 506 (638)
Q Consensus 442 ~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (638)
.. .+..+-.++...+++.+|++...+++.. .+.|+.++..-..+|.-...++.|+.-|+...+.
T Consensus 304 ~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~-d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 304 MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI-DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred ceeeeeeheeeecccccCCHHHHHHHHHHHHhc-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 22 2333445556667777777777777663 3344666666677777777777777777777664
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.99 E-value=7.3e-06 Score=92.77 Aligned_cols=371 Identities=13% Similarity=-0.034 Sum_probs=225.7
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006624 238 ISAFGKLGRDISAIRLFDEMKENGLQPT-AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGR 316 (638)
Q Consensus 238 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 316 (638)
...+...|++.+|....... +..+. ..........+...|+++.+...++.+.......+..........+...|+
T Consensus 348 a~~~~~~g~~~~Al~~a~~a---~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~ 424 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAA---GDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHR 424 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHC---CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCC
Confidence 34455566666665533332 11100 111222334455678888888877765322111122233344555668899
Q ss_pred HHHHHHHHHHHHHcCC------CCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHHhc
Q 006624 317 VEDAYGLFMNMLKEGC------KPD--IVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNV----VTYNTVIKSLFES 384 (638)
Q Consensus 317 ~~~A~~~~~~~~~~~~------~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~ 384 (638)
+++|...+......-. .+. ......+...+...|++++|...++.........+. ...+.+...+...
T Consensus 425 ~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 504 (903)
T PRK04841 425 YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK 504 (903)
T ss_pred HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc
Confidence 9999999988765311 111 122233445667899999999999998763211121 2334444455667
Q ss_pred CChHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC---CHhhHHHHHHHH
Q 006624 385 KAPASEASAWFEKMKAN----GVL-PSPFTYSILIDGFCKTNRVEKAHLLLEEMEEK----GFPP---CPAAYCSLINGY 452 (638)
Q Consensus 385 ~~~~~a~~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~---~~~~~~~li~~~ 452 (638)
|+..++ ...+++.... |.. ....++..+...+...|+++.|...+++.... +... ....+..+...+
T Consensus 505 G~~~~A-~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 505 GELARA-LAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred CCHHHH-HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 887776 5555555432 111 11234455677788999999999999886542 2111 223445566677
Q ss_pred HccCCHHHHHHHHHHHHHc----CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHhhH-----HHHHHHH
Q 006624 453 GKAKRYEAANELFLELKEY----CGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCK-PDVYTY-----NALMSGM 522 (638)
Q Consensus 453 ~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~-----~~l~~~~ 522 (638)
...|++++|...+.+.... +.......+..+...+...|++++|...++........ .....+ ...+..+
T Consensus 584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (903)
T PRK04841 584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYW 663 (903)
T ss_pred HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHH
Confidence 7889999999999887653 11112344555667788899999999999887542101 111111 1122444
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCC-HHHHHHHHHHHHh
Q 006624 523 VRAGMIDDAYSLLRRMEEDGCVPD---INSHNIILNGLAKSGGPKRAMEIFTKMQHS----EIKPD-AVSYNTILGCLSR 594 (638)
Q Consensus 523 ~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~ 594 (638)
...|+.+.|...+........... ...+..+..++...|++++|...+++.... |..++ ..++..+..++.+
T Consensus 664 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~ 743 (903)
T PRK04841 664 QMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ 743 (903)
T ss_pred HHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 568999999999877654221111 112345677788999999999999998752 33322 3466777888999
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 006624 595 AGMFEEAARLMKDMNAKG 612 (638)
Q Consensus 595 ~g~~~~A~~~~~~m~~~~ 612 (638)
.|+.++|.+.+.+..+..
T Consensus 744 ~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 744 QGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 999999999999988753
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.95 E-value=3.2e-05 Score=70.73 Aligned_cols=302 Identities=13% Similarity=0.104 Sum_probs=161.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHH-HHHH
Q 006624 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKI-YTTL 272 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~l 272 (638)
++.-..-+...+...|++.+|+..|...++-++ .+-.++..-...|...|+...|+.-+...++. +||-.. -..-
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp--~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDP--NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc--hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 344445566666777777777777777766332 22233344445666677777777777777663 455332 2223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH--------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 006624 273 VSIYFKLGEVEKALGLVQEMKGKGCALTV--------------YTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVL 338 (638)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~--------------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 338 (638)
...+.+.|.++.|..=|+..++..+.-.. ......+..+...|+...|+.....+++..+- |...
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l 191 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASL 191 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHH
Confidence 34566777777777777777766432110 11112233444556666666666666654222 4555
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006624 339 INNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFC 418 (638)
Q Consensus 339 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 418 (638)
+..-..+|...|+...|+.=++...+.... +..++--+-..+.
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-------------------------------------nTe~~ykis~L~Y 234 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQD-------------------------------------NTEGHYKISQLLY 234 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccc-------------------------------------chHHHHHHHHHHH
Confidence 555555666666666665555444332211 2222223333344
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhh-HH---HH---------HHHHHccCCHHHHHHHHHHHHHcCCCCcH---HHHHH
Q 006624 419 KTNRVEKAHLLLEEMEEKGFPPCPAA-YC---SL---------INGYGKAKRYEAANELFLELKEYCGCSSA---RVYAV 482 (638)
Q Consensus 419 ~~~~~~~A~~~~~~~~~~~~~~~~~~-~~---~l---------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~ 482 (638)
..|+.+.++...++-++.+ ||... |. .+ +......+++.++.+-.+...+....... ..+..
T Consensus 235 ~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~ 312 (504)
T KOG0624|consen 235 TVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRV 312 (504)
T ss_pred hhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehe
Confidence 4444444444444444332 22211 10 00 11123345555566666666554332112 22344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006624 483 MIKHFGKCGRLSDAVDLFNEMKKLRCKPD-VYTYNALMSGMVRAGMIDDAYSLLRRMEED 541 (638)
Q Consensus 483 li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 541 (638)
+-.+|...|++.+|++.-.+..+. .|| +.++.--..+|.-..+++.|+.-|+.+.+.
T Consensus 313 ~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 313 LCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred eeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 455666667777777777777664 344 666666667777777777777777777765
No 101
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=0.0001 Score=75.16 Aligned_cols=51 Identities=14% Similarity=0.140 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 006624 527 MIDDAYSLLRRMEEDGCVPD----INSHNIILNGLAKSGGPKRAMEIFTKMQHSE 577 (638)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 577 (638)
|..+.+.-...|.+...-|| ...|..+|..+....++..|.+.+.+|..+-
T Consensus 1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKV 1360 (1416)
T ss_pred hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcC
Confidence 55556666666766544443 4578889999999999999999999998753
No 102
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.92 E-value=7.5e-06 Score=81.98 Aligned_cols=267 Identities=18% Similarity=0.204 Sum_probs=166.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006624 272 LVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGR 351 (638)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 351 (638)
.+.+.....++.+|+.+++.+..... -...|..+.+.|...|+++.|.++|.+. ..++..|.+|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcccc
Confidence 45556677888999999988876643 3456777888999999999999998653 246677889999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 352 LEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLE 431 (638)
Q Consensus 352 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 431 (638)
+++|.++-.+.. |.......|-.-..-+-..|+..++ ++++-.+. .|+ ..|..|-+.|..+..+++.+
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~ea-eqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEA-EQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhh-hheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHH
Confidence 999999887754 3333445555444455555665555 33322211 233 24677888888888877776
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH--------
Q 006624 432 EMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEM-------- 503 (638)
Q Consensus 432 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------- 503 (638)
+-... .-..|...+..-|-..|++..|...|-+... |..-+++|-..+-|++|.++-+.-
T Consensus 875 k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~ 942 (1636)
T KOG3616|consen 875 KHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKH 942 (1636)
T ss_pred HhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHH
Confidence 54322 2234566677778888999999888876654 456667777777777776665421
Q ss_pred ------HhCCCCCCHhhH------HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 504 ------KKLRCKPDVYTY------NALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFT 571 (638)
Q Consensus 504 ------~~~~~~p~~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 571 (638)
...|-..-+... ..-++.-+..+.++-|.++-+-..+.. .|.+ ...+..-+-..|++++|.+.+-
T Consensus 943 v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~v--hlk~a~~ledegk~edaskhyv 1019 (1636)
T KOG3616|consen 943 VAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGEV--HLKLAMFLEDEGKFEDASKHYV 1019 (1636)
T ss_pred HHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Cccc--hhHHhhhhhhccchhhhhHhhH
Confidence 111100001111 111222334455555555555444432 1222 2234445678899999988887
Q ss_pred HhhhC
Q 006624 572 KMQHS 576 (638)
Q Consensus 572 ~m~~~ 576 (638)
+.++.
T Consensus 1020 eaikl 1024 (1636)
T KOG3616|consen 1020 EAIKL 1024 (1636)
T ss_pred HHhhc
Confidence 77653
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=1.5e-06 Score=84.98 Aligned_cols=261 Identities=13% Similarity=0.086 Sum_probs=144.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 006624 273 VSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRL 352 (638)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 352 (638)
..-+.+.|++.+|.-.|+..++.++. +...|..|.......++-..|+..+++.++..+. +..+...|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhH
Confidence 34456788888888888888877665 7778888888888888888888888888876544 677777888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 353 EDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEE 432 (638)
Q Consensus 353 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 432 (638)
..|.+.++.......+ |..+ ......+. ....+-.++...+ .+..++|-+
T Consensus 370 ~~Al~~L~~Wi~~~p~-----y~~l-----~~a~~~~~-------~~~~~s~~~~~~l-------------~~i~~~fLe 419 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPK-----YVHL-----VSAGENED-------FENTKSFLDSSHL-------------AHIQELFLE 419 (579)
T ss_pred HHHHHHHHHHHHhCcc-----chhc-----cccCcccc-------ccCCcCCCCHHHH-------------HHHHHHHHH
Confidence 8888888877553311 0000 00000000 0000001121111 112222222
Q ss_pred -HHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006624 433 -MEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPD 511 (638)
Q Consensus 433 -~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 511 (638)
....+..+|+.++..|.-.|.-.|++++|.+.|+.++.. -|.|..+||.|...++...+.++|+..|.+..+. .|+
T Consensus 420 aa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v-~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~ 496 (579)
T KOG1125|consen 420 AARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV-KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPG 496 (579)
T ss_pred HHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc-CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCC
Confidence 223332355555555555555566666666666665553 3345555666666666666666666666666553 344
Q ss_pred -HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC---------CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006624 512 -VYTYNALMSGMVRAGMIDDAYSLLRRMEED---------GCVPDINSHNIILNGLAKSGGPKRAME 568 (638)
Q Consensus 512 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~p~~~~~~~l~~~~~~~g~~~~A~~ 568 (638)
+...-.|.-+|...|.+++|.+.|-+++.. +..++...|..|=.++.-.++.|-+.+
T Consensus 497 yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 497 YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 222233444556666666666655544421 111234455555555555555554433
No 104
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=1.9e-07 Score=88.05 Aligned_cols=148 Identities=17% Similarity=0.180 Sum_probs=69.1
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH--c--C
Q 006624 451 GYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVR--A--G 526 (638)
Q Consensus 451 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~--g 526 (638)
.+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.. .| .+...+..++.. . +
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCch
Confidence 344445555555444321 233444445555555555555555555555432 22 222223333221 1 2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 006624 527 MIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMF-EEAARLM 605 (638)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~ 605 (638)
.+.+|..+|+++.+. ..++..+.+.+..+....|++++|.+++++....+. -|+.+...++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 355566666665443 344555555555555666666666666555554321 1344455555555555555 4445555
Q ss_pred HHHH
Q 006624 606 KDMN 609 (638)
Q Consensus 606 ~~m~ 609 (638)
.++.
T Consensus 260 ~qL~ 263 (290)
T PF04733_consen 260 SQLK 263 (290)
T ss_dssp HHCH
T ss_pred HHHH
Confidence 5554
No 105
>PLN02789 farnesyltranstransferase
Probab=98.87 E-value=3.2e-06 Score=80.80 Aligned_cols=215 Identities=9% Similarity=0.034 Sum_probs=147.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006624 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK-MVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
++..+-.++...++.++|+.+..+++... +-+..+|+.-..++.+.| ++++++..++++.+..++ +..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 44444455566677788888888877742 334456666666666666 578888888888877554 666777766666
Q ss_pred HhcCCH--hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---C
Q 006624 206 MQEGYY--EKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL---G 280 (638)
Q Consensus 206 ~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g 280 (638)
.+.|+. +++++.++++.+.++ .|..+|+...-.+...|+++++++.++++++.+. .|..+|+.....+.+. |
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dp--kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDA--KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccc
Confidence 666653 677888888888765 6777888888888888888888888888888653 4667777766665554 2
Q ss_pred C----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 006624 281 E----VEKALGLVQEMKGKGCALTVYTYTELIKGLGRA----GRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGR 348 (638)
Q Consensus 281 ~----~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 348 (638)
. .+++++...+++...+. |...|+-+...+... +...+|.+.+.+....++. +......|++.|+.
T Consensus 194 ~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred cccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 2 24667777677766654 666777666666652 3446677777777665433 66677778888775
No 106
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.85 E-value=1.7e-07 Score=88.38 Aligned_cols=250 Identities=13% Similarity=0.073 Sum_probs=129.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 006624 135 LDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKI 214 (638)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 214 (638)
+.-.|++..++.-.+ ..............-+.+++...|+++.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334566666655444 111111112334455666677777665443 3333322 45555554444444333445555
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 215 HELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKG 294 (638)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 294 (638)
+.-+++.........+..........+...|++++|++++... .+.......+.+|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555544433321122233333334555667777777776532 3556666677777777778777777777776
Q ss_pred CCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 006624 295 KGCALTVYTYTELIKG----LGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPN 370 (638)
Q Consensus 295 ~~~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 370 (638)
.+ .|. +...+..+ ....+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+.. +
T Consensus 160 ~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~ 234 (290)
T PF04733_consen 160 ID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-D 234 (290)
T ss_dssp CS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-H
T ss_pred cC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-C
Confidence 53 232 22333332 22334577788888876554 4557777777777777778888888777776554322 3
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 006624 371 VVTYNTVIKSLFESKAPASEASAWFEKMKA 400 (638)
Q Consensus 371 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 400 (638)
..+...++-.....|+..+.+.+++.++..
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 344444554555555554444555555554
No 107
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.84 E-value=1e-06 Score=77.72 Aligned_cols=178 Identities=15% Similarity=0.088 Sum_probs=128.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006624 143 VMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMC 222 (638)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 222 (638)
.+..+...... .+-+..+ ....+.+.-.|+-+.+..+........+ -+....+..+....+.|++.+|...|.+..
T Consensus 52 a~~al~~~~~~--~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 52 AAAALGAAVLR--NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred HHHHHHHHHhc--CcchHHH-HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 44444444443 2334455 6666777777777777777776554422 266666678888888888888888888888
Q ss_pred hCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 006624 223 NEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVY 302 (638)
Q Consensus 223 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 302 (638)
...+ +|...|+.+.-+|.+.|++++|..-|.+..+.- .-+....|.|.-.+.-.|+++.|..++......+.. |..
T Consensus 128 ~l~p--~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~ 203 (257)
T COG5010 128 RLAP--TDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSR 203 (257)
T ss_pred ccCC--CChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chH
Confidence 8665 788888888888888888888888888887752 335677788888888888888888888887766544 666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 303 TYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 303 ~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
.-..+.......|++++|..+-..-.
T Consensus 204 v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 204 VRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHHHhhcCChHHHHhhccccc
Confidence 66677777788888888877765543
No 108
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.76 E-value=1.6e-05 Score=79.67 Aligned_cols=137 Identities=17% Similarity=0.229 Sum_probs=71.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006624 343 INVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNR 422 (638)
Q Consensus 343 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 422 (638)
+.+.....++.+|+.+++.+..... ...-|..+...|...|+.. .++++|.+. ..++-.|..|.+.|+
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe-~ae~lf~e~---------~~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFE-IAEELFTEA---------DLFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHH-HHHHHHHhc---------chhHHHHHHHhcccc
Confidence 3344455666677777766655331 1122223333333333333 335444322 124455667777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 423 VEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNE 502 (638)
Q Consensus 423 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 502 (638)
++.|.++-.+... .......|.+-..-+-+.|++.+|.+++-.+.. |+ ..|.+|-+.|..++.+++.++
T Consensus 807 w~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHH
Confidence 7777776655442 233445555555556666777766666544322 22 234556666666666665554
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.76 E-value=5e-06 Score=83.56 Aligned_cols=189 Identities=16% Similarity=0.127 Sum_probs=135.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006624 409 TYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFG 488 (638)
Q Consensus 409 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 488 (638)
.|..++.+|+..|+..+|..+..+..++ +|++..|..+++......-+++|.++.+..... .-..+.....
T Consensus 426 mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~ 496 (777)
T KOG1128|consen 426 MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLIL 496 (777)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccc
Confidence 4556777888888888888887777763 778888888887777777777777777765442 1122222233
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 006624 489 KCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD-INSHNIILNGLAKSGGPKRAM 567 (638)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 567 (638)
+.++++++.+.|+.-.+.. +-...+|-.+..+..+.++++.|.+.|...... .|| ...||.+-.+|.+.|+-.+|.
T Consensus 497 ~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~ 573 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAF 573 (777)
T ss_pred cchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHH
Confidence 4678888888887766543 334667777777777888888888888887764 344 677888888888888888888
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 568 EIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 568 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
..+.+..+.+ .-+...|...+....+.|.+++|.+.+.++.+
T Consensus 574 ~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 574 RKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 8888888765 33555677777777888888888888887764
No 110
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=3.1e-06 Score=82.76 Aligned_cols=249 Identities=12% Similarity=0.083 Sum_probs=181.3
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHh
Q 006624 133 RCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYE 212 (638)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 212 (638)
.-+.++|+..+|.-.|+..++.+ |-+...|-.|.......++-..|+..+.+..+..+. |......|...|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence 34567888888888888888764 556788888888888888888899988888887554 7788888888899899888
Q ss_pred HHHHHHHHHHhCCCCC-------CCHHHHHHHHHHHHccCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006624 213 KIHELYNEMCNEGNCF-------PDTVTYSALISAFGKLGRDISAIRLFDEMK-ENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 213 ~A~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
.|+..++..+...+.. ++...-.. +.+.....+....++|-++. ..+..+|..++..|.-.|.-.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 9998888876654310 01000000 12222333344555555544 45555788888889889999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006624 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPD-IVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 363 (638)
|.+.|+..+...+. |...||.|...++...+.++|+..|.+.++. .|. +.+...|.-.|...|.+++|.+.|-..+
T Consensus 449 aiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999988766 8889999999999999999999999999885 343 3344557777888999999988877664
Q ss_pred HCC---------CCCCHhHHHHHHHHHHhcCChH
Q 006624 364 ALQ---------CKPNVVTYNTVIKSLFESKAPA 388 (638)
Q Consensus 364 ~~~---------~~p~~~~~~~ll~~~~~~~~~~ 388 (638)
... ..++...|.+|-.++...++.+
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 321 2234567777776666666654
No 111
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.71 E-value=4.2e-06 Score=77.78 Aligned_cols=188 Identities=10% Similarity=-0.031 Sum_probs=133.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCH--H
Q 006624 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGP---SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTA--N 196 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~ 196 (638)
......+..+...+...|++++|...++++.... +.++ .++..+..++.+.|++++|...|+++.+..+.... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456788889999999999999999999988743 2222 46788889999999999999999999876433121 2
Q ss_pred HHHHHHHHHHhc--------CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHH
Q 006624 197 TYNSMILMLMQE--------GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKI 268 (638)
Q Consensus 197 ~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 268 (638)
++..+..++.+. |++++|.+.|+++....+. +...+..+..... ... .. ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~a~~~~~~----~~~------~~--------~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN--SEYAPDAKKRMDY----LRN------RL--------AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC--ChhHHHHHHHHHH----HHH------HH--------HHH
Confidence 566666666654 7889999999999887642 2222222211100 000 00 011
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006624 269 YTTLVSIYFKLGEVEKALGLVQEMKGKGCA--LTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
...+...+.+.|++++|...++......+. .....+..+...+.+.|++++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 235667788999999999999998876432 23567888899999999999999988888765
No 112
>PLN02789 farnesyltranstransferase
Probab=98.69 E-value=2.4e-05 Score=74.87 Aligned_cols=211 Identities=13% Similarity=0.076 Sum_probs=158.1
Q ss_pred HHHHhccccchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 006624 95 VHQVLNIDVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETR-MIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKA 173 (638)
Q Consensus 95 ~~~vl~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 173 (638)
+..++......+.|+.....+.... +-+..+|+....++...| ++++++..++.+.... +-+..+|+-....+.+.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l 119 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHc
Confidence 3445555566677777777666544 445678888888888888 6799999999988754 45556677665556666
Q ss_pred CCH--HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc---CCh-
Q 006624 174 KMV--NKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL---GRD- 247 (638)
Q Consensus 174 g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~- 247 (638)
|+. ++++.+++++.+...+ |..+|+....++...|+++++++.++++++.++ .|...|+.....+.+. |+.
T Consensus 120 ~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~--~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV--RNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC--CchhHHHHHHHHHHhcccccccc
Confidence 653 7789999999888655 889999999999999999999999999999876 6777777776666554 333
Q ss_pred ---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006624 248 ---ISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL----GEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR 313 (638)
Q Consensus 248 ---~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 313 (638)
++++++..+++... +-|...|+.+...+... ++..+|.+.+.+..+.++. +......|++.|+.
T Consensus 197 ~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 46777777777763 45788899888888773 4456788888887776544 77788888888875
No 113
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.69 E-value=0.00075 Score=70.04 Aligned_cols=222 Identities=11% Similarity=0.115 Sum_probs=140.5
Q ss_pred cchHHHHHHHHHhhcCCCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 006624 103 VEINVKIQFFKWAGRRRNFEHNSTTYMALIR--CLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKAL 180 (638)
Q Consensus 103 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 180 (638)
++...|++-.....++.+ .. .|...++ .+.|.|..++|..+++..-..+ ..|..+...+-..|.+.|+.++|.
T Consensus 23 ~qfkkal~~~~kllkk~P--n~--~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHP--NA--LYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HHHHHHHHHHHHHHHHCC--Cc--HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHH
Confidence 345667776666665542 22 2223333 3578999999998888765544 348888999999999999999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC-C---------hHHH
Q 006624 181 SIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG-R---------DISA 250 (638)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~~~A 250 (638)
.+|++.... .|+..-...+..+|.+.+.+.+-.+.--++-+.-+ .+...+=++++...+.- . ..-|
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p--k~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP--KRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--cccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 999999877 56677777788888888887664444444444332 33444444444444321 1 1235
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 251 IRLFDEMKENG-LQPTAKIYTTLVSIYFKLGEVEKALGLV-QEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 251 ~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
.+.++.+.+.+ ---+..-...-...+...|.+++|++++ ....+.-..-+...-+.-++.+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 55666666543 1112222223334555678899999988 334333333344444556777888888988888888888
Q ss_pred HcCCC
Q 006624 329 KEGCK 333 (638)
Q Consensus 329 ~~~~~ 333 (638)
..|..
T Consensus 254 ~k~~D 258 (932)
T KOG2053|consen 254 EKGND 258 (932)
T ss_pred HhCCc
Confidence 87654
No 114
>PF12854 PPR_1: PPR repeat
Probab=98.69 E-value=2.8e-08 Score=59.10 Aligned_cols=32 Identities=38% Similarity=0.672 Sum_probs=19.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 577 EIKPDAVSYNTILGCLSRAGMFEEAARLMKDM 608 (638)
Q Consensus 577 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 608 (638)
|+.||..||+++|++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666555
No 115
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.68 E-value=1.2e-05 Score=85.80 Aligned_cols=239 Identities=12% Similarity=0.094 Sum_probs=166.7
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH
Q 006624 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA 236 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 236 (638)
+.+...+..|+..+...+++++|.++.+...+..+. ....|..+...+.+.++.+++.-+ .+..
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l~------------- 91 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLID------------- 91 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhhh-------------
Confidence 445678888888888888999999888877766322 334444455566777776655554 3322
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006624 237 LISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGR 316 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 316 (638)
......++.-...+...|.+.+ -+..++..++.+|-+.|+.++|..+++++++.++. |+.+.|.+...|... +
T Consensus 92 ---~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 92 ---SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-D 164 (906)
T ss_pred ---hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-h
Confidence 2222333323333333444432 35558888999999999999999999999998855 888999999999888 9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHhcCChHHHHHHHH
Q 006624 317 VEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVV-TYNTVIKSLFESKAPASEASAWF 395 (638)
Q Consensus 317 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~ 395 (638)
+++|.+++.+.+.. |...+++..+.+++.++.... |+.. .+-.++
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~d~f~~i~----------------- 210 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDFDFFLRIE----------------- 210 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccchHHHHHH-----------------
Confidence 99999988887654 666778899999999988743 3322 222222
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 006624 396 EKMKAN-GVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYG 453 (638)
Q Consensus 396 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 453 (638)
+.+... |..--..++-.+...|-..++++++..+++.+.+.. +.|..+..-++.+|.
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 222221 222334567778888999999999999999999986 667777888888776
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.67 E-value=5.7e-06 Score=76.88 Aligned_cols=189 Identities=13% Similarity=0.055 Sum_probs=123.9
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC-C-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCH-HH
Q 006624 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK-P-TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDT-VT 233 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~ 233 (638)
......+...+..+.+.|++++|...|+++....+. | ...++..+..++.+.|++++|+..|+++.+..+..+.. .+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345667778888888888888888888888776332 1 12466778888888888888888888888766532322 23
Q ss_pred HHHHHHHHHcc--------CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 006624 234 YSALISAFGKL--------GRDISAIRLFDEMKENGLQPTA-KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTY 304 (638)
Q Consensus 234 ~~~l~~~~~~~--------g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 304 (638)
+..+...+... |+.++|.+.++.+.+.. |+. ..+..+..... ... .. ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~--------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RL--------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HH--------HHHH
Confidence 44555555543 66777888887777652 332 22221111100 000 00 0111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 006624 305 TELIKGLGRAGRVEDAYGLFMNMLKEGCK-P-DIVLINNLINVLGRAGRLEDALKLFNKMEAL 365 (638)
Q Consensus 305 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 365 (638)
..+...+.+.|++++|...++..++.... | ....+..+..++.+.|++++|...++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 24556788899999999999998876321 2 3567888899999999999999988887653
No 117
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.67 E-value=1.5e-05 Score=85.73 Aligned_cols=204 Identities=10% Similarity=0.080 Sum_probs=112.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHH
Q 006624 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCV----MGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTY 198 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 198 (638)
.++..|-..+.-....++.+.|.++.++++..--. .-..+|.++++.-..-|.-+...++|+++.+. ...-..|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHH
Confidence 35566666666666666666666666666554111 11235555555555555555666666666554 1122345
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 006624 199 NSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPT---AKIYTTLVSI 275 (638)
Q Consensus 199 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~ 275 (638)
..|...|.+..++++|-++++.|.+... .....|..++..+.+..+-+.|..++.+..+. -|. .......+..
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 5556666666666666666666665443 34555666666666666666666666655543 122 2233344444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006624 276 YFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK 333 (638)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 333 (638)
-.+.|+.+.+..+|+..+..-+. -...|+..|+.-.+.|+.+.+..+|++.+..+..
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 55566666666666555554332 4455566666666666666666666666555444
No 118
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.64 E-value=0.00061 Score=66.61 Aligned_cols=175 Identities=14% Similarity=0.106 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 006624 458 YEAANELFLELKEYCGCSSARVYAVMIKHFGKCG---RLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSL 534 (638)
Q Consensus 458 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 534 (638)
.+++..+++.....-...+..+|..+.+.--..- ..+.....++++...-...-..+|-.++....+..-.+.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 4566666666655433334444444443222222 2556667777766543222245677788888888889999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006624 535 LRRMEEDGCVP-DINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGF 613 (638)
Q Consensus 535 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 613 (638)
|.++.+.+..+ ++...++++.-+|. ++.+-|.++|+--... ..-++.--...++-+.+.++-+.|..+|++....++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99999987777 67778888886664 7889999999986653 222344445788888999999999999999998877
Q ss_pred CCCH--hhHHHHHHHHhccCCcc
Q 006624 614 EYDQ--ITYSSILEAVGKVDEDR 634 (638)
Q Consensus 614 ~p~~--~~~~~l~~~~~~~g~~~ 634 (638)
.||. .+|..+|+-=...|+..
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHH
Confidence 7666 48999998877777754
No 119
>PF12854 PPR_1: PPR repeat
Probab=98.64 E-value=5.3e-08 Score=57.90 Aligned_cols=32 Identities=38% Similarity=0.820 Sum_probs=18.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006624 542 GCVPDINSHNIILNGLAKSGGPKRAMEIFTKM 573 (638)
Q Consensus 542 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 573 (638)
|+.||..||++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45556666666666666666666666655555
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.63 E-value=1e-05 Score=85.47 Aligned_cols=149 Identities=8% Similarity=0.004 Sum_probs=129.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 006624 120 NFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYN 199 (638)
Q Consensus 120 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 199 (638)
.+++++.++-.|..+..+.|.+++|..+++..... .+-+.......+..+.+.+++++|...+++.....+. +...++
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR-FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHH
Confidence 45788999999999999999999999999999885 2556678889999999999999999999999988655 788889
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006624 200 SMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLV 273 (638)
Q Consensus 200 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 273 (638)
.+..++.+.|++++|.++|+++...++ .+..++..+...+-+.|+.++|...|+...+.- .+....|+..+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p--~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHP--EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 999999999999999999999998554 458899999999999999999999999998752 34555655444
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.62 E-value=2.2e-05 Score=82.98 Aligned_cols=236 Identities=10% Similarity=0.049 Sum_probs=163.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKS-IQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
++.....+=.++..-|..++|-+- +++.. .++...++-....+++.-....... +..++..+..|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQAR------------QVLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHH------------HHHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHH
Confidence 444444455566666776666433 33222 2333333333333333333333333 455789999999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006624 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEV 282 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 282 (638)
.+..+.|.+++|..+++...+..+ .+......+...+.+.+++++|+...++..+.. +-+....+.+..++.+.|++
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~~P--d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQRFP--DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcch
Confidence 999999999999999999999775 567788888999999999999999999999874 34677888889999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006624 283 EKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKM 362 (638)
Q Consensus 283 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 362 (638)
++|..+|++....++. +..++..+...+...|+.++|...|+...+. ..|....|+.++ +++..-..+++.+
T Consensus 171 ~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~ 242 (694)
T PRK15179 171 EQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------VDLNADLAALRRL 242 (694)
T ss_pred HHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------HHHHHHHHHHHHc
Confidence 9999999999985443 6889999999999999999999999999876 233445555443 3344455566665
Q ss_pred HHC----CCCCCHhHHHHHHHHHHh
Q 006624 363 EAL----QCKPNVVTYNTVIKSLFE 383 (638)
Q Consensus 363 ~~~----~~~p~~~~~~~ll~~~~~ 383 (638)
... |...........|..+-.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 243 GVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred CcccccCCCceeeeeHHHHHHHHhh
Confidence 433 223334445555544433
No 122
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=6.3e-05 Score=66.59 Aligned_cols=246 Identities=15% Similarity=0.111 Sum_probs=136.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHH-H
Q 006624 138 TRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIH-E 216 (638)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~ 216 (638)
.|+|..++......... +.++..-.-+.++|...|.+..... +++... .|.......+...+...++-+.-+ +
T Consensus 21 ~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~ 94 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSILAS 94 (299)
T ss_pred hhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHHHH
Confidence 45555554444433221 1333444445556666665443332 222221 233333333333333344433333 3
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006624 217 LYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKG 296 (638)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 296 (638)
+.+.+...... .+......-...|+..|++++|++...... +......=...+.+..+.+-|.+.+++|.+..
T Consensus 95 l~E~~a~~~~~-sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 95 LYELVADSTDG-SNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHHhhccc-hhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 33334332221 232333344456777778888877766511 33333333455667777788888888887652
Q ss_pred CCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHh
Q 006624 297 CALTVYTYTELIKGLG----RAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVV 372 (638)
Q Consensus 297 ~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 372 (638)
+..+.+.|..++. ..+.+.+|.-+|++|.++ ..|+..+.+-...++...|++++|..+++.......+ +..
T Consensus 168 ---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpe 242 (299)
T KOG3081|consen 168 ---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPE 242 (299)
T ss_pred ---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHH
Confidence 5556665555544 345677888888888764 5667777787888888888888888888887775533 455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 006624 373 TYNTVIKSLFESKAPASEASAWFEKMKAN 401 (638)
Q Consensus 373 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 401 (638)
+...++-.....|...++..+.+.++...
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 55555555556666666656666666554
No 123
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.59 E-value=5.1e-05 Score=81.81 Aligned_cols=232 Identities=13% Similarity=0.036 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006624 337 VLINNLINVLGRAGRLEDALKLFNKMEAL-QCKP---NVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSI 412 (638)
Q Consensus 337 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 412 (638)
..|-..+......++.++|.++.+++... +.+- -...|.+++.....-|. ++...++|++..+.- -....|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~-eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGT-EESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCc-HHHHHHHHHHHHHhc--chHHHHHH
Confidence 33444444444445555555555444321 0000 11233333333222332 222255555554431 11234566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHhcC
Q 006624 413 LIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGC-SSARVYAVMIKHFGKCG 491 (638)
Q Consensus 413 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g 491 (638)
|...|.+.+.+++|.++++.|.++- .-....|...++.+.+.++-+.|..++.++.+.-.. .........+..-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 7777777777777777777777652 355667777777777777777777777777764211 13444555556666777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 006624 492 RLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD--INSHNIILNGLAKSGGPKRAMEI 569 (638)
Q Consensus 492 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 569 (638)
+.+.+..+|+...... +.-...|+.+++.-.++|+.+.+..+|++.+..++.|. -..|...+..=-+.|+-+.+..+
T Consensus 1615 DaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred CchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 8788777887776542 33456777778877788888888888888887776665 34455555555555665444443
Q ss_pred HHHh
Q 006624 570 FTKM 573 (638)
Q Consensus 570 ~~~m 573 (638)
=.++
T Consensus 1694 KarA 1697 (1710)
T KOG1070|consen 1694 KARA 1697 (1710)
T ss_pred HHHH
Confidence 3333
No 124
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.58 E-value=5.7e-06 Score=69.54 Aligned_cols=96 Identities=14% Similarity=-0.035 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006624 198 YNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYF 277 (638)
Q Consensus 198 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 277 (638)
+..+...+.+.|++++|.+.|+......+ .+...|..+...+.+.|++++|...|+...+.. +.+...+..+..++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQP--WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 33445555555555555555555555443 445555555555555555555555555555542 234555555555555
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 006624 278 KLGEVEKALGLVQEMKGKG 296 (638)
Q Consensus 278 ~~g~~~~A~~~~~~m~~~~ 296 (638)
..|++++|...|+...+..
T Consensus 104 ~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 5555555555555555443
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=4.1e-05 Score=67.77 Aligned_cols=173 Identities=12% Similarity=0.114 Sum_probs=103.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 006624 392 SAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEY 471 (638)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 471 (638)
..+.+.+.......+......-...|+..|++++|++..... .+......-+..+.+..+++-|.+.+++|.+.
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 334444444433333333333445577778888887776652 12333444455566677777777777777764
Q ss_pred CCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 006624 472 CGCSSARVYAVMIKHFGK----CGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDI 547 (638)
Q Consensus 472 ~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 547 (638)
.+..+.+.|..++.+ .+.+.+|.-+|++|.++ .+|+..+.+....++...|++++|..++++++.+... ++
T Consensus 167 ---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dp 241 (299)
T KOG3081|consen 167 ---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DP 241 (299)
T ss_pred ---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CH
Confidence 345566666666554 34577777777777664 3577777777777777777777777777777766432 56
Q ss_pred HHHHHHHHHHHhcCCHHH-HHHHHHHhhh
Q 006624 548 NSHNIILNGLAKSGGPKR-AMEIFTKMQH 575 (638)
Q Consensus 548 ~~~~~l~~~~~~~g~~~~-A~~~~~~m~~ 575 (638)
.+...++..-...|...+ -.+.+.+++.
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 666555555555554433 3444555543
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.57 E-value=1.8e-05 Score=70.09 Aligned_cols=165 Identities=15% Similarity=0.054 Sum_probs=136.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006624 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLV 273 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 273 (638)
|... ..+-..+...|+-+....+........+ .|.......+....+.|++.+|...+.+..... ++|...|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~--~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYP--KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCc--ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHH
Confidence 3444 5566777778888888888887666444 566777779999999999999999999998764 67899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 006624 274 SIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLE 353 (638)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 353 (638)
-+|.+.|++++|..-|.+..+..+. +...++.+.-.+.-.|+.+.|..++......+.. |..+-..+.......|+++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChH
Confidence 9999999999999999999887655 6778888888899999999999999998887544 7777788888899999999
Q ss_pred HHHHHHHHHHH
Q 006624 354 DALKLFNKMEA 364 (638)
Q Consensus 354 ~A~~~~~~~~~ 364 (638)
+|.++...-..
T Consensus 220 ~A~~i~~~e~~ 230 (257)
T COG5010 220 EAEDIAVQELL 230 (257)
T ss_pred HHHhhcccccc
Confidence 99988776443
No 127
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.57 E-value=0.0017 Score=67.61 Aligned_cols=223 Identities=12% Similarity=0.111 Sum_probs=159.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhH
Q 006624 136 DETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNI--LGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEK 213 (638)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 213 (638)
...+++..|.......++. .|+. .|..++.+ +.+.|+.++|..+++.....+.. |..|...+-..|-+.|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 3467888888888888774 3443 23333333 57899999999998888776655 88999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HH
Q 006624 214 IHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE----------VE 283 (638)
Q Consensus 214 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~ 283 (638)
|..+|++..... |+......+..+|.+.+++.+-.+.=-+|.+. ++-+...+=++++.+...-. ..
T Consensus 96 ~~~~Ye~~~~~~---P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 96 AVHLYERANQKY---PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHhhC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 999999999876 77888888999999999887655554444443 33455566666666654321 34
Q ss_pred HHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006624 284 KALGLVQEMKGKG-CALTVYTYTELIKGLGRAGRVEDAYGLFM-NMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNK 361 (638)
Q Consensus 284 ~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 361 (638)
-|.+.++.+.+.+ .--+..-.......+...|++++|..++. ...+.-...+...-+.-+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 5667777777664 22233333344556678899999999994 444443444555556677788888999998888888
Q ss_pred HHHCC
Q 006624 362 MEALQ 366 (638)
Q Consensus 362 ~~~~~ 366 (638)
+...+
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 88766
No 128
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.56 E-value=1.4e-05 Score=71.13 Aligned_cols=120 Identities=12% Similarity=0.110 Sum_probs=69.7
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-HccCC--hHH
Q 006624 173 AKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF-GKLGR--DIS 249 (638)
Q Consensus 173 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~ 249 (638)
.++.+++...+++..+.++. +...|..+...|...|++++|.+.|++..+..+ .+...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P--~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRG--ENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCCCcHH
Confidence 44555555556555554333 566666666666666666666666666666554 4555555555543 44454 366
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006624 250 AIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKG 296 (638)
Q Consensus 250 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 296 (638)
|.+++++..+.. +-+..++..+...+.+.|++++|+..++++.+..
T Consensus 129 A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 129 TREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 666666666553 2245556666666666666666666666665543
No 129
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.55 E-value=2e-05 Score=70.11 Aligned_cols=120 Identities=10% Similarity=0.105 Sum_probs=87.9
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHH
Q 006624 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIY-FKLGE--VEK 284 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~-~~~g~--~~~ 284 (638)
.++.+++...++..+..++ .|...|..+...+...|++++|...|++..+.. +.+...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P--~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP--QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 5666777777777777665 677778888888888888888888888777764 33666777777653 56666 477
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006624 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
|.+++++..+.++. +...+..+...+.+.|++++|+..|+++++..
T Consensus 129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 88888887777665 66777777777777888888888887777753
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.53 E-value=7.5e-05 Score=79.81 Aligned_cols=238 Identities=12% Similarity=0.104 Sum_probs=149.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 006624 300 TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIK 379 (638)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 379 (638)
+...+..|+..+...+++++|.++.+...+..+. ....|-.+...+.+.++.+++..+ .+.. ..+...-|
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l~--~~~~~~~~----- 99 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLID--SFSQNLKW----- 99 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhhh--hcccccch-----
Confidence 4556677777777777777777777766654222 223333344456666666655554 2222 11111111
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHH
Q 006624 380 SLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYE 459 (638)
Q Consensus 380 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 459 (638)
..+..+...|.+. .-+...+..+..+|-+.|+.++|..+++++.+.. +.|+.+.+.+...|... +++
T Consensus 100 ---------~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 100 ---------AIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred ---------hHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 2223333444443 2344577888999999999999999999999988 88899999999999999 999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006624 460 AANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRME 539 (638)
Q Consensus 460 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 539 (638)
+|.+++.++... |...+++.++..++.++.... |+...+ -..+.+++.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~d~---------------f~~i~~ki~ 214 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDFDF---------------FLRIERKVL 214 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccchH---------------HHHHHHHHH
Confidence 999998888763 666678888888888887753 332221 122222222
Q ss_pred HC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 006624 540 ED-GCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLS 593 (638)
Q Consensus 540 ~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 593 (638)
.. |..--..++-.+...|....+++++..+++.+.+..-+ |.....-++.+|.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 22 22223444555566667777777788877777764322 4555666666665
No 131
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=8.6e-06 Score=81.94 Aligned_cols=215 Identities=15% Similarity=0.090 Sum_probs=155.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 006624 128 YMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ 207 (638)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (638)
--.+...+...|-..+|..++++. ..+..++-+|...|+-.+|..+..+..++ +|+...|..+++....
T Consensus 401 q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 345667777778888888777754 34566777888888888888887777764 6777788888777777
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006624 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALG 287 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 287 (638)
..-+++|.++++..... .-..+.......+++.++.+.|+.-.+.. +....+|..+..+..+.++++.|.+
T Consensus 470 ~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred hHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 77778888877765332 12222233334678888888888776653 3466778888888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 288 LVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 288 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 364 (638)
.|.......+. +...||.+-.+|.+.|+-.+|...+.+..+.+.. +...|...+....+.|.+++|.+.+.++..
T Consensus 541 aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 541 AFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 88887766544 6778888888888888888888888888877633 555666667777788888888888887755
No 132
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.47 E-value=9.9e-06 Score=68.06 Aligned_cols=94 Identities=7% Similarity=-0.118 Sum_probs=53.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 006624 130 ALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEG 209 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 209 (638)
....++...|++++|...|+..+... +.+...+..+..++.+.|++++|...|++..+.++. +...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcC
Confidence 44555556666666666666655532 345555555666666666666666666666554332 5555555666666666
Q ss_pred CHhHHHHHHHHHHhCC
Q 006624 210 YYEKIHELYNEMCNEG 225 (638)
Q Consensus 210 ~~~~A~~~~~~~~~~~ 225 (638)
++++|++.|+..+...
T Consensus 107 ~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 107 EPGLAREAFQTAIKMS 122 (144)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 6666666666665544
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=0.00036 Score=61.51 Aligned_cols=164 Identities=18% Similarity=0.228 Sum_probs=115.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 006624 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (638)
.|..++-+....|+.+.|...++++..+= +.+...-..-...+-..|++++|+++|+.+++.++ .|.+++-.-+...
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddp--t~~v~~KRKlAil 130 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDP--TDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCc--chhHHHHHHHHHH
Confidence 45556666777888888888888877652 21222222222234457888899999999888775 6777787777777
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHH
Q 006624 242 GKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAG---RVE 318 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~ 318 (638)
-..|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-..+. +...+..+.+.+.-.| +++
T Consensus 131 ka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHH
Confidence 7778777888877777765 5568888888888888888888888888888876544 5555666665554443 455
Q ss_pred HHHHHHHHHHHc
Q 006624 319 DAYGLFMNMLKE 330 (638)
Q Consensus 319 ~A~~~~~~~~~~ 330 (638)
-|.++|.+.++.
T Consensus 209 ~arkyy~~alkl 220 (289)
T KOG3060|consen 209 LARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHh
Confidence 677777777765
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=0.00019 Score=69.38 Aligned_cols=112 Identities=15% Similarity=0.087 Sum_probs=50.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 006624 417 FCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDA 496 (638)
Q Consensus 417 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 496 (638)
+...|++++|+..+..+...- |.|+.......+.+.+.++.++|.+.++.+... .+......-.+..+|.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL-DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCccHHHHHHHHHHHhcCChHHH
Confidence 334455555555555544432 444444444444455555555555555444443 111133333444444444444444
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 006624 497 VDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDA 531 (638)
Q Consensus 497 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 531 (638)
..+++...... +-|...|..|..+|...|+..++
T Consensus 394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHH
Confidence 44444443331 23344444444444444444433
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=0.00094 Score=58.96 Aligned_cols=180 Identities=13% Similarity=0.057 Sum_probs=102.9
Q ss_pred HHHHHHHHh---CC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 006624 392 SAWFEKMKA---NG-VLPSPF-TYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFL 466 (638)
Q Consensus 392 ~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 466 (638)
.+++..+.. .| ..++.. .|..++-+....|+.+.|..+++++...- |.+...-..-.-.+-..|++++|.++++
T Consensus 32 v~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~ 110 (289)
T KOG3060|consen 32 VQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYE 110 (289)
T ss_pred HHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHH
Confidence 555555543 22 334433 23444555566677777777777766552 4343333333334455667777777777
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006624 467 ELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD 546 (638)
Q Consensus 467 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 546 (638)
.+.+. .+.|..++-.=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.+++++-.. +.+
T Consensus 111 ~lL~d-dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n 187 (289)
T KOG3060|consen 111 SLLED-DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFN 187 (289)
T ss_pred HHhcc-CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCc
Confidence 77665 3455555555555555566666666666666554 34566677777777777777777777777766542 223
Q ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHhhh
Q 006624 547 INSHNIILNGLAKSG---GPKRAMEIFTKMQH 575 (638)
Q Consensus 547 ~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~ 575 (638)
+-.+..+...+.-.| +..-|.++|.+..+
T Consensus 188 ~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 188 PLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 444455555544443 44556666666664
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=0.00042 Score=67.10 Aligned_cols=120 Identities=13% Similarity=0.076 Sum_probs=73.2
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006624 240 AFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVED 319 (638)
Q Consensus 240 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 319 (638)
.+...|.+++|+..+..++.. .+-|+..+....+.+.+.++.++|.+.++.+....+. .......+..+|.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHH
Confidence 344556666677666666654 2234444455556666667777777777666665433 24455556666666777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006624 320 AYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKM 362 (638)
Q Consensus 320 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 362 (638)
|+.+++........ |+..|..|..+|...|+..++..-..+.
T Consensus 393 ai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 393 AIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 77666666665333 6666666666776666666666655554
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.27 E-value=4.5e-05 Score=63.73 Aligned_cols=95 Identities=16% Similarity=0.126 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 006624 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (638)
....+...+.+.|++++|...|+.+...++. +...+..+...+...|++++|...+++....++ .+...+..+...+
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~ 95 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDP--DDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CChHHHHHHHHHH
Confidence 3444444444555555555555554443221 444444455555555555555555555444432 3344444444445
Q ss_pred HccCChHHHHHHHHHHHH
Q 006624 242 GKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m~~ 259 (638)
...|++++|.+.|+...+
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 96 LALGEPESALKALDLAIE 113 (135)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555554444
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.23 E-value=6.8e-05 Score=62.67 Aligned_cols=21 Identities=14% Similarity=0.080 Sum_probs=8.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 006624 519 MSGMVRAGMIDDAYSLLRRME 539 (638)
Q Consensus 519 ~~~~~~~g~~~~A~~~~~~~~ 539 (638)
...+...|++++|...|++..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAI 112 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 333333333343433333333
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.16 E-value=0.00014 Score=61.48 Aligned_cols=87 Identities=15% Similarity=0.195 Sum_probs=37.8
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006624 202 ILMLMQEGYYEKIHELYNEMCNEGNCFPDT--VTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL 279 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 279 (638)
...+...|++++|.+.|+.+....+. ++. .....+...+...|++++|+..++..... ......+....++|.+.
T Consensus 55 A~~~~~~g~~~~A~~~l~~~~~~~~d-~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~ 131 (145)
T PF09976_consen 55 AKAAYEQGDYDEAKAALEKALANAPD-PELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQ 131 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHC
Confidence 34444445555555555554443311 111 12223344444455555555555443222 12333444445555555
Q ss_pred CCHHHHHHHHHH
Q 006624 280 GEVEKALGLVQE 291 (638)
Q Consensus 280 g~~~~A~~~~~~ 291 (638)
|++++|...|+.
T Consensus 132 g~~~~A~~~y~~ 143 (145)
T PF09976_consen 132 GDYDEARAAYQK 143 (145)
T ss_pred CCHHHHHHHHHH
Confidence 555555555543
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.10 E-value=0.00012 Score=71.44 Aligned_cols=126 Identities=14% Similarity=0.177 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006624 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
.....++..+...++++.|..+|+++.+.. |+ ....+++.+...++-.+|++++++.++..+ .+..........
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p--~d~~LL~~Qa~f 243 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP--QDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC--CCHHHHHHHHHH
Confidence 334555566666777777777777777662 33 333466666667777777777777776554 455666666666
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMK 293 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 293 (638)
+.+.++++.|+++.+++.+.. +-+..+|..|..+|.+.|++++|+-.++.+.
T Consensus 244 Ll~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777777777652 2234477777777777777777777776654
No 141
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.07 E-value=6.5e-06 Score=49.83 Aligned_cols=33 Identities=45% Similarity=0.713 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006624 584 SYNTILGCLSRAGMFEEAARLMKDMNAKGFEYD 616 (638)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 616 (638)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577778888888888888888888877777776
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.06 E-value=0.00037 Score=58.83 Aligned_cols=119 Identities=17% Similarity=0.160 Sum_probs=68.9
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHH
Q 006624 207 QEGYYEKIHELYNEMCNEGNCFP-DTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPT--AKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 207 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~ 283 (638)
..++...+.+.++.+....+..+ .....-.+...+...|++++|...|+........++ ......|...+...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 36667777777777776553210 012333445666667777777777777776542222 123444566666777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 284 KALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNM 327 (638)
Q Consensus 284 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 327 (638)
+|+..++..... ......+....+.+.+.|+.++|...|+..
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777777553322 223445555666677777777777766543
No 143
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=0.01 Score=56.43 Aligned_cols=288 Identities=15% Similarity=0.050 Sum_probs=175.4
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh
Q 006624 168 NILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD 247 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 247 (638)
+.+.+..++.+|+..+....+..+. ++.-|..-...+..-|++++|..-.+.-++..+ -........-..+...++.
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd--~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKD--GFSKGQLREGQCHLALSDL 133 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCC--CccccccchhhhhhhhHHH
Confidence 5667777888888888888887544 566677777777888888888887777666443 2222333333444444444
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHH-HHHHHhcCCHHHHHHHHH
Q 006624 248 ISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGC-ALTVYTYTEL-IKGLGRAGRVEDAYGLFM 325 (638)
Q Consensus 248 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l-i~~~~~~g~~~~A~~~~~ 325 (638)
.+|.+.++ +...| ....++..++....... +|.-.++..+ ..++...|++++|.+.--
T Consensus 134 i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 134 IEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred HHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 44444443 11111 12233333333333222 2333444443 456778899999988877
Q ss_pred HHHHcCCCCCHHHHHHHHH--HHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 006624 326 NMLKEGCKPDIVLINNLIN--VLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGV 403 (638)
Q Consensus 326 ~~~~~~~~p~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 403 (638)
..++.... + .+...++ ++.-.++.+.|...|++....+ |+.......-.. ...++.+...
T Consensus 194 ~ilkld~~-n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~-----------~k~le~~k~~-- 255 (486)
T KOG0550|consen 194 DILKLDAT-N--AEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMM-----------PKKLEVKKER-- 255 (486)
T ss_pred HHHhcccc-h--hHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhh-----------HHHHHHHHhh--
Confidence 77765322 2 2233333 4455788899999999987754 555443322211 2222334433
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHH
Q 006624 404 LPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKG---FPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVY 480 (638)
Q Consensus 404 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 480 (638)
.+-..+.|++.+|.+.|.+.+... ..++...|........+.|+.++|+.--+...+.. +.-+..|
T Consensus 256 ----------gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikal 324 (486)
T KOG0550|consen 256 ----------GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKAL 324 (486)
T ss_pred ----------hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHH
Confidence 234678999999999999988653 34556667777778888999999998888877741 1112233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006624 481 AVMIKHFGKCGRLSDAVDLFNEMKKLR 507 (638)
Q Consensus 481 ~~li~~~~~~g~~~~A~~~~~~m~~~~ 507 (638)
-.-..++...++|++|.+-|+...+..
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333445566788899998888876653
No 144
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.05 E-value=0.016 Score=58.82 Aligned_cols=157 Identities=9% Similarity=0.125 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 006624 174 KMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRL 253 (638)
Q Consensus 174 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 253 (638)
|++++|.++|-.+-.+ ...|..+.+.|++-.+.++++.--.......-...|+.+...+.....+++|.+.
T Consensus 748 g~feeaek~yld~drr---------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRR---------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchh---------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666665544 1234455556666555555443211100001124566666666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006624 254 FDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK 333 (638)
Q Consensus 254 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 333 (638)
+..-.. ....+.++.+..++++-+.+.+.+.+ +....-.+.+.+.+.|.-++|.+.|-+-- .
T Consensus 819 Y~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~- 880 (1189)
T KOG2041|consen 819 YSYCGD---------TENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS---L- 880 (1189)
T ss_pred HHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc---C-
Confidence 644221 12245555555555554444443332 45556667777777777777777664321 1
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006624 334 PDIVLINNLINVLGRAGRLEDALKLFNKM 362 (638)
Q Consensus 334 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 362 (638)
| ...+..|...+++.+|.++-+..
T Consensus 881 p-----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 881 P-----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred c-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 22345566667777777776654
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.03 E-value=0.00024 Score=69.55 Aligned_cols=124 Identities=18% Similarity=0.177 Sum_probs=84.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006624 234 YSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR 313 (638)
Q Consensus 234 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 313 (638)
...|+..+...++++.|+++|+++.+.. |+ ....++..+...++-.+|.+++++..+..+. +...+......+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 3445555566677777777777777653 33 3344666666677777777777777765433 56666666677777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006624 314 AGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 314 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 363 (638)
.++++.|+.+.+++.+..+. +..+|..|..+|.+.|+++.|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 78888888888777775332 45577778888888888888887777664
No 146
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.98 E-value=1.4e-05 Score=48.31 Aligned_cols=33 Identities=42% Similarity=0.828 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006624 514 TYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD 546 (638)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 546 (638)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444443
No 147
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.96 E-value=1.6e-05 Score=47.62 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006624 583 VSYNTILGCLSRAGMFEEAARLMKDMNAKGFEY 615 (638)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 615 (638)
.+|+.++++|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 366777777777777777777777777766665
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.89 E-value=0.00053 Score=55.65 Aligned_cols=97 Identities=13% Similarity=0.074 Sum_probs=39.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-CHHHHHHHHH
Q 006624 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCK--PTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFP-DTVTYSALIS 239 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~ 239 (638)
+...+..+.+.|++++|...|.++...... .....+..+..++.+.|++++|...|+.+....+..+ ....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 333444444444444444444444433111 0122333344444444444444444444443322111 1223334444
Q ss_pred HHHccCChHHHHHHHHHHHH
Q 006624 240 AFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 240 ~~~~~g~~~~A~~~~~~m~~ 259 (638)
.+.+.|+.++|.+.++++.+
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHhCChHHHHHHHHHHHH
Confidence 44444444444444444444
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.88 E-value=0.0006 Score=55.35 Aligned_cols=101 Identities=10% Similarity=0.033 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC--CCHHHHHHH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTC--VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK--PTANTYNSM 201 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l 201 (638)
.++...+..+.+.|++++|.+.+..+..... +.....+..+..++.+.|++++|...|+.+....+. ....++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4667788889999999999999999987532 122457778999999999999999999999876332 235678888
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCC
Q 006624 202 ILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
..++.+.|++++|...++++....+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCc
Confidence 8999999999999999999999765
No 150
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.85 E-value=3e-05 Score=46.43 Aligned_cols=31 Identities=42% Similarity=0.612 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 006624 514 TYNALMSGMVRAGMIDDAYSLLRRMEEDGCV 544 (638)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 544 (638)
+|+.++.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444333
No 151
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.84 E-value=0.00038 Score=68.45 Aligned_cols=124 Identities=12% Similarity=0.218 Sum_probs=93.8
Q ss_pred CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh
Q 006624 437 GFPPCPAAYCSLINGYGKAKRYEAANELFLELKEY--CGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYT 514 (638)
Q Consensus 437 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 514 (638)
+.+.+......+++.+....+++.+..++.+.... ....-..+..++++.|.+.|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34667777788888888888888888888877764 2222233445888888888888888888888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006624 515 YNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKS 560 (638)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 560 (638)
+|.|++.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888776666777766666666555
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.83 E-value=0.00035 Score=53.81 Aligned_cols=88 Identities=26% Similarity=0.357 Sum_probs=33.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006624 202 ILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE 281 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 281 (638)
...+...|++++|...++++.+..+ .+...+..+...+...|++++|.+.++...+.. +.+..++..+...+...|+
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELDP--DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3333444444444444444443322 222333333333444444444444444433322 1122333334444444444
Q ss_pred HHHHHHHHHHH
Q 006624 282 VEKALGLVQEM 292 (638)
Q Consensus 282 ~~~A~~~~~~m 292 (638)
+++|...+...
T Consensus 84 ~~~a~~~~~~~ 94 (100)
T cd00189 84 YEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 153
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.82 E-value=0.014 Score=53.95 Aligned_cols=184 Identities=11% Similarity=0.064 Sum_probs=111.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHH---HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHH
Q 006624 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTY---NSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYS 235 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 235 (638)
++.........+.+.|++++|.+.|+++....+.+ .... -.++.++.+.+++++|...|++..+..|..|+. .|.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHH
Confidence 44444455566677888888888888888764432 2322 346677888889999999999988887765554 233
Q ss_pred HHHHHHHc--cC---------------C---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 236 ALISAFGK--LG---------------R---DISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 236 ~l~~~~~~--~g---------------~---~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 295 (638)
..+.+.+. .+ + ..+|++.|+.+++. -|+ ..-..+|...+..+...
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~ 173 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDR 173 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHH
Confidence 33333221 11 1 13444555555554 133 22334454444443321
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006624 296 GCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE--GCKPDIVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 296 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 363 (638)
-...--.+.+.|.+.|.+..|..-++.+++. +.+........++.+|...|..++|.+....+.
T Consensus 174 ----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1111124456688888888888888888875 333345566777888888888888887776553
No 154
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.82 E-value=0.001 Score=60.49 Aligned_cols=98 Identities=20% Similarity=0.168 Sum_probs=71.3
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh
Q 006624 168 NILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD 247 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 247 (638)
+-+.+.++|++|+..|.+.++..+. |++-|..-..+|++.|+++.|++-.+..+..++ --..+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp--~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP--HYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHccCcH
Confidence 5566777888888888888777443 666677777788888888888888877777664 4566777788888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHH
Q 006624 248 ISAIRLFDEMKENGLQPTAKIYT 270 (638)
Q Consensus 248 ~~A~~~~~~m~~~g~~~~~~~~~ 270 (638)
.+|++.|++.++. .|+-.+|-
T Consensus 166 ~~A~~aykKaLel--dP~Ne~~K 186 (304)
T KOG0553|consen 166 EEAIEAYKKALEL--DPDNESYK 186 (304)
T ss_pred HHHHHHHHhhhcc--CCCcHHHH
Confidence 8888877777763 56655543
No 155
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.80 E-value=0.0082 Score=50.45 Aligned_cols=127 Identities=14% Similarity=0.078 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCC-CCCHHHHHH
Q 006624 193 PTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGL-QPTAKIYTT 271 (638)
Q Consensus 193 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~ 271 (638)
|++.--..|..++.+.|++.+|...|++... |+...|....-.+..+....+++..|...++.+.+... ..++...-.
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 3444444455555555555555555555554 33334455555555555555555555555555554320 001222333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006624 272 LVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYG 322 (638)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 322 (638)
+...+...|.+++|..-|+.....- |+...-......+.++|+.+++..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHH
Confidence 4455555555555555555555442 222222222334445555444443
No 156
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.79 E-value=0.00076 Score=55.81 Aligned_cols=97 Identities=9% Similarity=-0.033 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006624 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
.....+...+...|++++|.++|+-+....+. +..-|..|..++-..|++++|++.|.......+ .|...+-.+...
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--ddp~~~~~ag~c 112 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--DAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCchHHHHHHHH
Confidence 34455556666777777777777777666443 556666677777777777777777777776664 566667777777
Q ss_pred HHccCChHHHHHHHHHHHHC
Q 006624 241 FGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~ 260 (638)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777766653
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.78 E-value=0.00044 Score=53.24 Aligned_cols=92 Identities=21% Similarity=0.253 Sum_probs=46.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc
Q 006624 165 EIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL 244 (638)
Q Consensus 165 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (638)
.+...+...|++++|...|+++.+.... +...+..+...+...|++++|.+.|+......+ .+...+..+...+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDP--DNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--cchhHHHHHHHHHHHH
Confidence 3444444555555555555555443211 234444555555555555555555555555443 2334455555555555
Q ss_pred CChHHHHHHHHHHHH
Q 006624 245 GRDISAIRLFDEMKE 259 (638)
Q Consensus 245 g~~~~A~~~~~~m~~ 259 (638)
|+.++|...++...+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 555555555555443
No 158
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.77 E-value=0.00041 Score=68.19 Aligned_cols=124 Identities=19% Similarity=0.168 Sum_probs=79.2
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006624 472 CGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL--RCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINS 549 (638)
Q Consensus 472 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 549 (638)
+.+.+......+++......+.+++..++.+.... ....-..|..+++..|.+.|..++++++++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34455556666666666666677777777766654 1111233445677777777777777777777777777777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc
Q 006624 550 HNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRA 595 (638)
Q Consensus 550 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 595 (638)
+|.|++.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777766655555555655555555444
No 159
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.75 E-value=0.014 Score=53.95 Aligned_cols=184 Identities=10% Similarity=0.011 Sum_probs=119.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSV---LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNS 200 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 200 (638)
+...+-.....+.+.|++++|...|+++.... +-++.. ...++.++.+.+++++|...|++..+..+......|-.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 44455566777788999999999999998853 222333 35577888999999999999999988755433344444
Q ss_pred HHHHHHh--cC---------------C---HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006624 201 MILMLMQ--EG---------------Y---YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 201 l~~~~~~--~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
...+++. .+ + ..+|++.|+++++.. |+.. -..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S~-------------ya~~A~~rl~~l~~~ 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNSQ-------------YTTDATKRLVFLKDR 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCCh-------------hHHHHHHHHHHHHHH
Confidence 4444431 11 1 245667777777765 3332 233444433333321
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 261 GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGK--GCALTVYTYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 261 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
=...-..+...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|......+.
T Consensus 174 ----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0111225667788888888888888888875 223345566677888888888888887766543
No 160
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.75 E-value=5.4e-05 Score=56.89 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=9.1
Q ss_pred HHHHHHhcCCHhHHHHHHHH
Q 006624 201 MILMLMQEGYYEKIHELYNE 220 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~ 220 (638)
+..+|.+.|++++|++++++
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 44444444444444444444
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.74 E-value=0.0019 Score=56.34 Aligned_cols=88 Identities=17% Similarity=0.183 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006624 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD-TVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVS 274 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 274 (638)
..+..+...+...|++++|...|++.....+..++ ...+..+...+.+.|++++|...+++..+.. +.+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 34555555566666666666666666554322121 2345555555555566666655555555532 123444444444
Q ss_pred HHHhcCCHHH
Q 006624 275 IYFKLGEVEK 284 (638)
Q Consensus 275 ~~~~~g~~~~ 284 (638)
.+...|+...
T Consensus 115 ~~~~~g~~~~ 124 (172)
T PRK02603 115 IYHKRGEKAE 124 (172)
T ss_pred HHHHcCChHh
Confidence 5555444333
No 162
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.012 Score=55.93 Aligned_cols=273 Identities=14% Similarity=0.013 Sum_probs=128.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 006624 275 IYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLED 354 (638)
Q Consensus 275 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 354 (638)
.+.+..++.+|+..+...++..+. ++..|..-...+...|++++|.--.+.-++.... ........-.++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHH
Confidence 455666777777777777776554 4556666666666677777766555544442111 11122333333444444444
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHH
Q 006624 355 ALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKA-NGVLPSPFTYSIL-IDGFCKTNRVEKAHLLLEE 432 (638)
Q Consensus 355 A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~ 432 (638)
|.+.++.-. .+ . ...+ ...++.... ..-+|...+|..+ ..++...|++++|.+.--.
T Consensus 136 A~~~~~~~~---------~~-~----------~ana-l~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 136 AEEKLKSKQ---------AY-K----------AANA-LPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHhhhhh---------hh-H----------Hhhh-hhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 444444110 00 0 0000 000011111 1112333333332 2344555666666665555
Q ss_pred HHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHH-------------HHHHHHHHHHhcCCHHHHHHH
Q 006624 433 MEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSAR-------------VYAVMIKHFGKCGRLSDAVDL 499 (638)
Q Consensus 433 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------------~~~~li~~~~~~g~~~~A~~~ 499 (638)
..+.+ +.+......-..++...++.+.|...|++.+..+ |+.. .+..-.+-..+.|++.+|.+.
T Consensus 195 ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~ 271 (486)
T KOG0550|consen 195 ILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYEC 271 (486)
T ss_pred HHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHH
Confidence 55443 3333333322333444556666666666655532 1111 111122233456666667666
Q ss_pred HHHHHhC---CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006624 500 FNEMKKL---RCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD-INSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 500 ~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
+.+.+.. +.+|+...|.....+..+.|+.++|+.-.++..+. .|. ...|..-..++...+++++|.+-+++..+
T Consensus 272 Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 272 YTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666543 22333444555555556666777766666666553 111 11222223334445566666666666554
No 163
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.73 E-value=0.0008 Score=51.44 Aligned_cols=76 Identities=14% Similarity=0.279 Sum_probs=42.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 006624 554 LNGLAKSGGPKRAMEIFTKMQHSEI-KPDAVSYNTILGCLSRAG--------MFEEAARLMKDMNAKGFEYDQITYSSIL 624 (638)
Q Consensus 554 ~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 624 (638)
|..+...|++...-.+|+.+++.|+ .|+..+|+.++.+..+.. +.-+.+.+++.|...+++|+..||+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3344444555555555555555555 555555555555444322 2334555666666666677777777666
Q ss_pred HHHhc
Q 006624 625 EAVGK 629 (638)
Q Consensus 625 ~~~~~ 629 (638)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 66644
No 164
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=4.5e-05 Score=44.50 Aligned_cols=29 Identities=31% Similarity=0.720 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006624 584 SYNTILGCLSRAGMFEEAARLMKDMNAKG 612 (638)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 612 (638)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56677777777777777777777776655
No 165
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.69 E-value=0.00068 Score=51.82 Aligned_cols=76 Identities=22% Similarity=0.369 Sum_probs=41.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 006624 307 LIKGLGRAGRVEDAYGLFMNMLKEGC-KPDIVLINNLINVLGRAG--------RLEDALKLFNKMEALQCKPNVVTYNTV 377 (638)
Q Consensus 307 li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~p~~~~~~~l 377 (638)
.|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444445666666666666666665 556666666655554432 223445555566555666666666666
Q ss_pred HHHHH
Q 006624 378 IKSLF 382 (638)
Q Consensus 378 l~~~~ 382 (638)
+..++
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 55544
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.68 E-value=0.0026 Score=55.53 Aligned_cols=91 Identities=11% Similarity=0.052 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVM--GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
....|..+...+...|++++|...+++.++....+ ....+..+...+.+.|++++|...+.+..+..+. +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 44567777777888888888888888877643222 1356777777788888888888888877765332 45666667
Q ss_pred HHHHHhcCCHhHHH
Q 006624 202 ILMLMQEGYYEKIH 215 (638)
Q Consensus 202 ~~~~~~~g~~~~A~ 215 (638)
...+...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 77777776654433
No 167
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.68 E-value=0.0012 Score=64.92 Aligned_cols=87 Identities=13% Similarity=-0.002 Sum_probs=41.5
Q ss_pred HHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHH
Q 006624 170 LGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDIS 249 (638)
Q Consensus 170 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 249 (638)
+...|++++|+..|.++.+..+. +...|..+..+|.+.|++++|+..+++++...+ .+...|..+..++...|++++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P--~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDP--SLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHhCCHHH
Confidence 33444555555555544444322 344444444455555555555555555544433 334444444455555555555
Q ss_pred HHHHHHHHHH
Q 006624 250 AIRLFDEMKE 259 (638)
Q Consensus 250 A~~~~~~m~~ 259 (638)
|+..|++..+
T Consensus 89 A~~~~~~al~ 98 (356)
T PLN03088 89 AKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 168
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.66 E-value=0.0013 Score=64.71 Aligned_cols=91 Identities=7% Similarity=-0.087 Sum_probs=43.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHh
Q 006624 133 RCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYE 212 (638)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 212 (638)
..+...|++++|+..|.++++.. +.+...+..+..+|.+.|++++|+..++++...... +...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHH
Confidence 33444455555555555554432 333444444455555555555555555555444222 3444444555555555555
Q ss_pred HHHHHHHHHHhCC
Q 006624 213 KIHELYNEMCNEG 225 (638)
Q Consensus 213 ~A~~~~~~~~~~~ 225 (638)
+|+..|++.+...
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 5555555554443
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.65 E-value=9.8e-05 Score=55.47 Aligned_cols=80 Identities=19% Similarity=0.306 Sum_probs=48.0
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 006624 525 AGMIDDAYSLLRRMEEDGCV-PDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKP-DAVSYNTILGCLSRAGMFEEAA 602 (638)
Q Consensus 525 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 602 (638)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..++++ .. ..| +......+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46677777777777765321 1344444567777777777777777776 22 122 2233445567777777777777
Q ss_pred HHHHH
Q 006624 603 RLMKD 607 (638)
Q Consensus 603 ~~~~~ 607 (638)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77765
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.64 E-value=0.0015 Score=56.77 Aligned_cols=95 Identities=14% Similarity=0.002 Sum_probs=59.4
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 006624 512 VYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVP--DINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTIL 589 (638)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 589 (638)
...|..+...+...|++++|...|++.......+ ...++..+...+...|++++|...+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4455666666667777777777777776543222 13467777777777888888888887777532 11234455555
Q ss_pred HHHH-------hcCCHHHHHHHHHH
Q 006624 590 GCLS-------RAGMFEEAARLMKD 607 (638)
Q Consensus 590 ~~~~-------~~g~~~~A~~~~~~ 607 (638)
..+. ..|++++|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 5555 77777755555543
No 171
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.63 E-value=0.0031 Score=57.43 Aligned_cols=103 Identities=17% Similarity=0.124 Sum_probs=84.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 006624 275 IYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLED 354 (638)
Q Consensus 275 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 354 (638)
-+.+.+++++|+..|.+.++..+. |.+.|..-..+|++.|.++.|++-.+..+..... -..+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 356788999999999999988766 8888888889999999999999988888876433 45688889999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 006624 355 ALKLFNKMEALQCKPNVVTYNTVIKSL 381 (638)
Q Consensus 355 A~~~~~~~~~~~~~p~~~~~~~ll~~~ 381 (638)
|.+.|++..+ +.|+..+|..-+...
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 9999998877 558888776666543
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.63 E-value=0.0011 Score=57.67 Aligned_cols=79 Identities=11% Similarity=0.029 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006624 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKP--TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
.+..+...+...|++++|+..|.+.......+ ...+|..+...+...|++++|++.+++.....+ ....++..+..
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~--~~~~~~~~la~ 114 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP--FLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CcHHHHHHHHH
Confidence 34444555555556666666655554432211 123555555666666666666666666555432 22333444444
Q ss_pred HHH
Q 006624 240 AFG 242 (638)
Q Consensus 240 ~~~ 242 (638)
.+.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 443
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.63 E-value=0.025 Score=53.95 Aligned_cols=94 Identities=10% Similarity=0.040 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCCC--HHH
Q 006624 515 YNALMSGMVRAGMIDDAYSLLRRMEEDGCVP-----DIN-SHNIILNGLAKSGGPKRAMEIFTKMQHS--EIKPD--AVS 584 (638)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~--~~~ 584 (638)
+..+...+.+.|++++|.++|++....-... +.. .|-..+-++...||+..|.+.+++.... ++..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 4455556667777777777777766542211 111 1222333445567777777777776642 22222 234
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHH
Q 006624 585 YNTILGCLSR--AGMFEEAARLMKDM 608 (638)
Q Consensus 585 ~~~l~~~~~~--~g~~~~A~~~~~~m 608 (638)
...|+.+|-. ...+++|..-|+.+
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 4455555532 22344444444444
No 174
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.61 E-value=0.0012 Score=62.53 Aligned_cols=132 Identities=12% Similarity=0.058 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGK-AKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
.+|..+++..-+.+..+.|..+|.++.+. ...+..+|...+..-.+ .++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~-~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD-KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 35666666666666677777777776643 23344555555555333 44555577777766654 33356666666666
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006624 205 LMQEGYYEKIHELYNEMCNEGNCFP-DTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
+...|+.+.|..+|++....-+... -...|..++..=.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6667777777777777665421101 113566666666666666666666666555
No 175
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.60 E-value=0.0016 Score=53.92 Aligned_cols=97 Identities=8% Similarity=-0.094 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006624 266 AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINV 345 (638)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 345 (638)
......+...+...|++++|.++|+.+...++. +...|..|.-++-..|++++|+..|.......+. |...+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 334455566666777777777777777766554 6666666777777777777777777777776543 66666777777
Q ss_pred HHccCCHHHHHHHHHHHHH
Q 006624 346 LGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 346 ~~~~g~~~~A~~~~~~~~~ 364 (638)
+...|+.+.|.+.|+....
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777776654
No 176
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.58 E-value=9.5e-05 Score=43.07 Aligned_cols=26 Identities=35% Similarity=0.726 Sum_probs=11.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006624 515 YNALMSGMVRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 540 (638)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44444444444444444444444443
No 177
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.56 E-value=0.0024 Score=60.56 Aligned_cols=131 Identities=12% Similarity=0.080 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc-cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006624 408 FTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGK-AKRYEAANELFLELKEYCGCSSARVYAVMIKH 486 (638)
Q Consensus 408 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 486 (638)
.+|..++...-+.+..+.|..+|.+..+.+ ..+...|......-.. .++.+.|.++|+...+. .+.+...|..-++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356667777777777888888888887543 3344555555555333 45666688888888776 56677777777888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006624 487 FGKCGRLSDAVDLFNEMKKLRCKPDV---YTYNALMSGMVRAGMIDDAYSLLRRMEED 541 (638)
Q Consensus 487 ~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 541 (638)
+.+.++.+.|..+|++.... +.++. ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888887765 22222 46777777777888888888888877764
No 178
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.53 E-value=0.14 Score=52.36 Aligned_cols=176 Identities=15% Similarity=0.125 Sum_probs=95.8
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC-CCCC--------CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC
Q 006624 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSR-KCKP--------TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNC 227 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 227 (638)
.|.++.|..+.......-.++.|...|-+.... |++. +...-.+=+.+ --|++++|.++|-+|-+.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh--
Confidence 677788888887777777777777777666543 2210 00011111122 2367777777776664422
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006624 228 FPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP----TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYT 303 (638)
Q Consensus 228 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 303 (638)
..+....+.|++-...++++. .|-.. -...|+.+.+.+.....+++|.+.|..-..
T Consensus 765 --------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------- 824 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------- 824 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------
Confidence 234445556666555554432 11111 134667777777777777777777654321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006624 304 YTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNK 361 (638)
Q Consensus 304 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 361 (638)
....+.++.+..++++-..+-+.+ +-|....-.+..++.+.|.-++|.+.|-+
T Consensus 825 ~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 825 TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 122445555555555544433332 22445556666777777777766665543
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.53 E-value=0.0058 Score=62.94 Aligned_cols=144 Identities=13% Similarity=0.096 Sum_probs=75.9
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc
Q 006624 402 GVLPSPFTYSILIDGFCKT-----NRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSS 476 (638)
Q Consensus 402 ~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 476 (638)
..+.|...|...+.+.... ++.++|..+|++..+.. |.+...+..+..++.....+. +.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~---------------~~ 395 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQ---------------PL 395 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcC---------------Cc
Confidence 3456677777777664332 23667888888888775 555555555443332211000 00
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006624 477 ARVYAVMIKHFGKCGRLSDAVDLFNEMKKL-RCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILN 555 (638)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 555 (638)
...++..+.+...+.... ....+...|..+.......|++++|...++++++.. |+...|..+..
T Consensus 396 ------------~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~ 461 (517)
T PRK10153 396 ------------DEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGK 461 (517)
T ss_pred ------------cHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHH
Confidence 001122333333332221 112233455555444555666666666666666643 56666666666
Q ss_pred HHHhcCCHHHHHHHHHHhhh
Q 006624 556 GLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 556 ~~~~~g~~~~A~~~~~~m~~ 575 (638)
.+...|+.++|.+.+++...
T Consensus 462 ~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 462 VYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 66666676666666666664
No 180
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.53 E-value=0.099 Score=50.58 Aligned_cols=150 Identities=16% Similarity=0.169 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 006624 477 ARVYAVMIKHFGKCGRLSDAVDLFNEMKKLR-CKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSH-NIIL 554 (638)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~ 554 (638)
..+|...++.-.+..-++.|..+|-+..+.+ +.+++..+++++..++ .|+...|..+|+--... .||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4467777777778888999999999999988 6788889999887654 68888999999876654 3454443 4566
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC
Q 006624 555 NGLAKSGGPKRAMEIFTKMQHSEIKPD--AVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDE 632 (638)
Q Consensus 555 ~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 632 (638)
.-+...++-+.|..+|+..+.. +..+ ..+|..+|.--..-|+...+..+=++|.+ +.|...+.....+-++...+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ik~d 550 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAIKAD 550 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhhhcc
Confidence 6778889999999999976542 1222 46899999988999999999998888874 35666555555555544333
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.49 E-value=0.008 Score=48.02 Aligned_cols=58 Identities=12% Similarity=0.113 Sum_probs=28.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 006624 167 VNILGKAKMVNKALSIFYQIKSRKCKPT--ANTYNSMILMLMQEGYYEKIHELYNEMCNE 224 (638)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 224 (638)
..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|+.++++....
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444445555555555555555443322 223334444555555555555555555443
No 182
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.039 Score=49.30 Aligned_cols=179 Identities=12% Similarity=0.070 Sum_probs=107.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 006624 135 LDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKI 214 (638)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 214 (638)
....|+..+..+-+..+.. ....+++.+-.....+..++.+++=.. ...++++..+.-.|.+.-.
T Consensus 132 ~~~lgnpqesLdRl~~L~~--------~V~~ii~~~e~~~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS 196 (366)
T KOG2796|consen 132 QQYLGNPQESLDRLHKLKT--------VVSKILANLEQGLAEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLS 196 (366)
T ss_pred HHhcCCcHHHHHHHHHHHH--------HHHHHHHHHHhccchhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhh
Confidence 3445555555444443322 122333444444444555555554332 3456677777778888888
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHH
Q 006624 215 HELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPT-----AKIYTTLVSIYFKLGEVEKALGLV 289 (638)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~ 289 (638)
..++.+.++.++. .++.....|++.-.+.||.+.|...|++..+..-..| ..+.......|.-.+++..|...+
T Consensus 197 ~d~~~~vi~~~~e-~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~ 275 (366)
T KOG2796|consen 197 VDAYHSVIKYYPE-QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFF 275 (366)
T ss_pred HHHHHHHHHhCCc-ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHH
Confidence 8888888886654 6777788888888888888888888887765322222 223333334555566677777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006624 290 QEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 290 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
.++...+.. |+..-|.-.-++.-.|+..+|++..+.|+..
T Consensus 276 ~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 276 TEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 666665443 4444444444444566677777777777665
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.48 E-value=0.012 Score=55.97 Aligned_cols=126 Identities=16% Similarity=0.257 Sum_probs=68.1
Q ss_pred HHHHHHcc-CChHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHH-H
Q 006624 237 LISAFGKL-GRDISAIRLFDEMKEN----GLQP--TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCA-----LTVY-T 303 (638)
Q Consensus 237 l~~~~~~~-g~~~~A~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----~~~~-~ 303 (638)
+...|-.. |++++|++.|++..+. | .+ -..++..++..+.+.|++++|.++|++....... .+.. .
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 34445555 6777777777766542 2 11 1335566777788888888888888877654221 1121 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHHcc--CCHHHHHHHHHHHH
Q 006624 304 YTELIKGLGRAGRVEDAYGLFMNMLKEG--CKPD--IVLINNLINVLGRA--GRLEDALKLFNKME 363 (638)
Q Consensus 304 ~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~--~~~~~~l~~~~~~~--g~~~~A~~~~~~~~ 363 (638)
|...+-++...||...|...+++..... +..+ ......|+.++-.. ..+..++.-|+.+.
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 2233445566788888888888776542 2212 23445555555432 33555555555543
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.47 E-value=0.0005 Score=48.59 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=35.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 167 VNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
...+.+.|++++|...|+++.+..+. +...+..+..++.+.|++++|...|+++++..
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 44556666666666666666665432 55666666666666666666666666666544
No 185
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.47 E-value=0.012 Score=60.71 Aligned_cols=138 Identities=13% Similarity=0.035 Sum_probs=76.6
Q ss_pred CCCCCHHHHHHHHHHHHh--cC---CHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC--------ChHHHHHHHHH
Q 006624 190 KCKPTANTYNSMILMLMQ--EG---YYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG--------RDISAIRLFDE 256 (638)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~--~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~ 256 (638)
..+.+..+|...+++... .+ ..++|.++|++..+..+ .....|..+..++.... +...+.+..++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP--~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEP--DFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 345577777777766543 22 26678888888887664 33444444433332211 12223333333
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006624 257 MKEN-GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 257 m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
.... ....+...|..+.-.....|++++|...+++....+ |+...|..+...+...|+.++|.+.+++..+..
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2221 122344556655555555666777777776666654 356666666666666677777766666666543
No 186
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.45 E-value=0.0036 Score=59.19 Aligned_cols=97 Identities=16% Similarity=-0.046 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCC-CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc-----CCCCcH
Q 006624 408 FTYSILIDGFCKTNRVEKAHLLLEEME----EKGF-PPCPAAYCSLINGYGKAKRYEAANELFLELKEY-----CGCSSA 477 (638)
Q Consensus 408 ~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~ 477 (638)
..++.+.+++.-.|+++.|.+.|+... +.|- ........+|...|.-..++++|+..+.+-... ...-..
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~ 315 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL 315 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 346667788888888888888887643 2221 223345666777787778888888877664431 111235
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 478 RVYAVMIKHFGKCGRLSDAVDLFNEMK 504 (638)
Q Consensus 478 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (638)
..|.+|..+|...|..++|+.+.+.-.
T Consensus 316 RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 316 RACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 677788888888888888887776543
No 187
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.44 E-value=0.014 Score=52.51 Aligned_cols=173 Identities=15% Similarity=0.148 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 006624 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCK--PTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALI 238 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 238 (638)
..+......+...|++++|...|+.+....+. -...+...++.++.+.|++++|...|+++++..|..|.. .+...+
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~ 84 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHH
Confidence 33444555667777888888888887765221 234455667777888888888888888887766543332 222222
Q ss_pred HHHHcc-------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006624 239 SAFGKL-------------GRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYT 305 (638)
Q Consensus 239 ~~~~~~-------------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 305 (638)
.+.+.. +...+|...|+.++ .-|=......+|...+..+... =...--
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li---------------~~yP~S~y~~~A~~~l~~l~~~----la~~e~ 145 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI---------------KRYPNSEYAEEAKKRLAELRNR----LAEHEL 145 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH---------------HH-TTSTTHHHHHHHHHHHHHH----HHHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHH---------------HHCcCchHHHHHHHHHHHHHHH----HHHHHH
Confidence 222211 11123333333333 3333344445555444444321 011112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHH
Q 006624 306 ELIKGLGRAGRVEDAYGLFMNMLKEGCKPDI----VLINNLINVLGRAGRLEDA 355 (638)
Q Consensus 306 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A 355 (638)
.+.+.|.+.|.+..|..-++.+++. -|++ .....++.+|.+.|..+.+
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 2456677777777777777777765 2222 2445566666666666533
No 188
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.39 E-value=0.066 Score=45.26 Aligned_cols=132 Identities=11% Similarity=0.016 Sum_probs=85.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCC-CCCHHHHHHH
Q 006624 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKC-KPTANTYNSM 201 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l 201 (638)
|+...-..+..++.+.|++.+|...|++...--...|+...-.+.++....+++..|...++.+-+..+ ..++.+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 344455567777777788888888887777655566777777777777777777777777777766531 1134445566
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 006624 202 ILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEM 257 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 257 (638)
.+.|...|++.+|...|+...... |+..........+.+.|+.+++..-+..+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~y---pg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYY---PGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhC---CCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 677777777777777777777754 44444444444556666666555444333
No 189
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.37 E-value=0.16 Score=49.32 Aligned_cols=453 Identities=14% Similarity=0.141 Sum_probs=235.3
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH--H
Q 006624 134 CLDETRMIGVMWKSIQDMVRSTCVMGP------SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM--L 205 (638)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~ 205 (638)
.+.++++++++.++|.+..... ..++ ...+.++++|... +.+........+.+. .| ...|-.+..+ .
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHH
Confidence 4567888888888888876642 2222 2345677777653 455555555555544 22 2234444433 3
Q ss_pred HhcCCHhHHHHHHHHHHhC--CCCCC-----------CHHHHHHHHHHHHccCChHHHHHHHHHHHHCC----CCCCHHH
Q 006624 206 MQEGYYEKIHELYNEMCNE--GNCFP-----------DTVTYSALISAFGKLGRDISAIRLFDEMKENG----LQPTAKI 268 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~--~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g----~~~~~~~ 268 (638)
.+.+++++|++.+...... +...| |-..-+..++.+...|++.++..+++++..+= ..-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 5788899988888776554 21111 11223556778889999999999888887543 3468888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006624 269 YTTLVSIYFKLGEVEKALGLVQEMKGK---GCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINV 345 (638)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 345 (638)
|+.++-.+.+. .|-++++. ++-| ..|. ++-.|.+.=+ .++.-.=..+.|....+..++..
T Consensus 170 yd~~vlmlsrS--------YfLEl~e~~s~dl~p--dyYe-milfY~kki~------~~d~~~Y~k~~peeeL~s~imqh 232 (549)
T PF07079_consen 170 YDRAVLMLSRS--------YFLELKESMSSDLYP--DYYE-MILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQH 232 (549)
T ss_pred HHHHHHHHhHH--------HHHHHHHhcccccCh--HHHH-HHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHH
Confidence 88877666543 33333221 2222 2232 2223322111 11110001123333333333333
Q ss_pred HHcc--CCHHHHHHHHHHHHHCCCCCCHhHH-HHHHHHHHhcCChHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHH
Q 006624 346 LGRA--GRLEDALKLFNKMEALQCKPNVVTY-NTVIKSLFESKAPASEASAWFEKMKANGVL----PSPFTYSILIDGFC 418 (638)
Q Consensus 346 ~~~~--g~~~~A~~~~~~~~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~ 418 (638)
..-. ....--+++++.....-+.|+.... ..+...+.. +..++ ..+.+.+....+. .=..+|..++....
T Consensus 233 lfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~-~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~V 309 (549)
T PF07079_consen 233 LFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQV-GHFCEAIASSKIEKLKEELIDRFGNLLSFKV 309 (549)
T ss_pred HHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3222 1122223333333333344543322 222222222 22222 2222222221111 12346778888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhh-------HHHHHHHHHcc----CCHHHHHHHHHHHHHcCCCCcHHHHHHHHH--
Q 006624 419 KTNRVEKAHLLLEEMEEKGFPPCPAA-------YCSLINGYGKA----KRYEAANELFLELKEYCGCSSARVYAVMIK-- 485 (638)
Q Consensus 419 ~~~~~~~A~~~~~~~~~~~~~~~~~~-------~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~-- 485 (638)
+.++...|.+.+.-+.... |+... -..+.+..|.. .+...=..+++.+....+ ........|+.
T Consensus 310 k~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di-DrqQLvh~L~~~A 386 (549)
T PF07079_consen 310 KQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI-DRQQLVHYLVFGA 386 (549)
T ss_pred HHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc-cHHHHHHHHHHHH
Confidence 9999999988888776543 22221 11222333311 122333344444443311 11111222222
Q ss_pred -HHHhcCC-HHHHHHHHHHHHhCCCCCCHhhHHHHH----HHHHH---cCCHHHHHHHHHHHHHCCCCCC----HHHHHH
Q 006624 486 -HFGKCGR-LSDAVDLFNEMKKLRCKPDVYTYNALM----SGMVR---AGMIDDAYSLLRRMEEDGCVPD----INSHNI 552 (638)
Q Consensus 486 -~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~p~----~~~~~~ 552 (638)
-+=+.|. -++|+.+++...+.. +-|...-|.+. .+|.+ ...+..-..+-+-..+.|++|- ...-|.
T Consensus 387 k~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 387 KHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF 465 (549)
T ss_pred HHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence 2223444 788899998887742 23443333322 22322 2233333444444446677764 334455
Q ss_pred HHHH--HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 006624 553 ILNG--LAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSS 622 (638)
Q Consensus 553 l~~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 622 (638)
|.++ +...|++.++.-+-.=+. .+.|++.+|..+.-++....++++|..++..+ +|+..++++
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 5444 467899998877666555 46789999999999999999999999998865 667666654
No 190
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.35 E-value=0.0061 Score=57.74 Aligned_cols=133 Identities=12% Similarity=-0.017 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCC-CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CCcH
Q 006624 408 FTYSILIDGFCKTNRVEKAHLLLEEME----EKGF-PPCPAAYCSLINGYGKAKRYEAANELFLELKEY----CG-CSSA 477 (638)
Q Consensus 408 ~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~ 477 (638)
..|..|.+.|.-.|+++.|+...+.-. +-|- .....++..+..++.-.|+++.|.+.|...... |. ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 356677777888899999988766532 2221 123457888999999999999999998875432 21 2335
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006624 478 RVYAVMIKHFGKCGRLSDAVDLFNEMKKL----R-CKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 478 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 540 (638)
.+.-+|.+.|.-..++++|+.++.+-... + ..-....+-+|..++...|..++|+.+.+..++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 56677888888889999999988764321 1 112345677899999999999999988776654
No 191
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.35 E-value=0.003 Score=54.95 Aligned_cols=88 Identities=19% Similarity=0.354 Sum_probs=57.7
Q ss_pred CCCHhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CCHHHHH
Q 006624 509 KPDVYTYNALMSGMVRA-----GMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKS----------------GGPKRAM 567 (638)
Q Consensus 509 ~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------g~~~~A~ 567 (638)
..+..+|..+++.+.+. |..+=....++.|.+-|+.-|..+|+.|++.+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 45777888888777643 55666677777888888888888888888775431 1234456
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcC
Q 006624 568 EIFTKMQHSEIKPDAVSYNTILGCLSRAG 596 (638)
Q Consensus 568 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 596 (638)
+++++|...|+.||..++..+++.+++.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 66666666666666666666666664443
No 192
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.34 E-value=0.00076 Score=48.18 Aligned_cols=51 Identities=12% Similarity=0.243 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 006624 173 AKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNE 224 (638)
Q Consensus 173 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 224 (638)
.|++++|++.|+++....+. +...+..++.+|.+.|++++|.++++++...
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44444444444444443222 4444444444444444444444444444443
No 193
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.11 Score=46.55 Aligned_cols=143 Identities=15% Similarity=0.152 Sum_probs=104.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-----H
Q 006624 233 TYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTE-----L 307 (638)
Q Consensus 233 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-----l 307 (638)
..+.++..+...|.+.-....+.+.++...+.++.....|.+.-.+.|+.+.|...|+...+..-..|..+.+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34667777778888888889999998877677888888999999999999999999987765433333333333 3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 006624 308 IKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVI 378 (638)
Q Consensus 308 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 378 (638)
...+..++++.+|...+.+....+.. |+...|.=.-+..-.|+..+|.+.++.|.... |...+-++++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~es~~ 326 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHESVL 326 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccC--CccchhhhHH
Confidence 44566788899999999888877544 56666655555556788999999999998744 5555444433
No 194
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.30 E-value=0.0039 Score=54.23 Aligned_cols=104 Identities=22% Similarity=0.323 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHc-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006624 229 PDTVTYSALISAFGK-----LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYT 303 (638)
Q Consensus 229 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 303 (638)
.|-.+|..++..+.+ .|.++-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+--
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~--------- 113 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM--------- 113 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc---------
Confidence 566666666666653 46677777778888888888888888888877654 2221 1111111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006624 304 YTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGR 351 (638)
Q Consensus 304 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 351 (638)
-| -.+.+-|++++++|...|+.||..++..+++.+.+.+.
T Consensus 114 ------hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 ------HY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ------cC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11 12345577788888888888888888888888766554
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.29 E-value=0.017 Score=46.11 Aligned_cols=109 Identities=13% Similarity=0.026 Sum_probs=79.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC--CCHHHHHHHHHH
Q 006624 129 MALIRCLDETRMIGVMWKSIQDMVRSTCVMG--PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK--PTANTYNSMILM 204 (638)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~ 204 (638)
.....++-..|+.++|+.+|++.+..|.... ...+..+...+...|++++|..++++.....+. .+......+..+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 3456778889999999999999998775544 456778888999999999999999998775222 122223334457
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006624 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
+...|+.++|++.+-.... ++...|..-|..|.
T Consensus 85 L~~~gr~~eAl~~~l~~la-----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA-----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 7888999999999887766 34445555555554
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.27 E-value=0.0011 Score=47.39 Aligned_cols=59 Identities=24% Similarity=0.329 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHH
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG-RDISAIRLFDEM 257 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m 257 (638)
+|..+...+.+.|++++|+..|++.++..+ .+...|..+..++.+.| ++++|++.+++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p--~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDP--NNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHST--THHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 334444444444444444444444444332 23333444444444444 344444444433
No 197
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.016 Score=53.21 Aligned_cols=99 Identities=17% Similarity=0.156 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006624 230 DTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG---EVEKALGLVQEMKGKGCALTVYTYTE 306 (638)
Q Consensus 230 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~ 306 (638)
|...|..|..+|...|+++.|..-|.+..+.. .+|...+..+..++.... ...++.++|+++...++. |+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 44444444444444444444444444444331 223333333333332211 123444444444443332 3334444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 006624 307 LIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 307 li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 444444444444444444444443
No 198
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.23 E-value=0.0011 Score=47.32 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=32.0
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006624 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
.+.|++++|++.|+++....+ .+...+..+...+.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP--DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT--TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345666666666666666554 35555556666666666666666666666654
No 199
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0096 Score=54.69 Aligned_cols=101 Identities=10% Similarity=-0.047 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC---CHhHHHHHHHHHHhCCCCCCCHHH
Q 006624 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEG---YYEKIHELYNEMCNEGNCFPDTVT 233 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~ 233 (638)
+-|...|..+...|...|+++.|..-|.+..+... +++..+..+..++..+. .-.++.++|++++...+ .|+.+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~--~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP--ANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC--ccHHH
Confidence 44555555555555555555555555555554422 24455555554444322 13455555555555543 45555
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHC
Q 006624 234 YSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 234 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
...|...+...|++.+|...|+.|.+.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 555555555556666666666665554
No 200
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.18 E-value=0.002 Score=46.12 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHhC
Q 006624 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEG-YYEKIHELYNEMCNE 224 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 224 (638)
++.+|..+...+...|++++|+..|.+..+..+. +...|..+..++.+.| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3456666777777777777777777777666433 5666777777777777 577777777776654
No 201
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.18 E-value=0.07 Score=47.91 Aligned_cols=177 Identities=12% Similarity=0.046 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRST--CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
...+-.....+...|++.+|+..|+.+.... .+..+.....++.++.+.|+++.|...|++..+.-+......+-..+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 3444556677888999999999999998752 12334667788899999999999999999988764332222233333
Q ss_pred HHHH--hc-----------CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHH
Q 006624 203 LMLM--QE-----------GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIY 269 (638)
Q Consensus 203 ~~~~--~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 269 (638)
.+.+ .. +...+|+..|+.++...| ......+|...+..+.+. =...-
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP----------------~S~y~~~A~~~l~~l~~~----la~~e 144 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYP----------------NSEYAEEAKKRLAELRNR----LAEHE 144 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-T----------------TSTTHHHHHHHHHHHHHH----HHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCc----------------CchHHHHHHHHHHHHHHH----HHHHH
Confidence 3322 11 223456666666666543 333344555544444331 11112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 006624 270 TTLVSIYFKLGEVEKALGLVQEMKGKGCAL--TVYTYTELIKGLGRAGRVEDAY 321 (638)
Q Consensus 270 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~ 321 (638)
-.+...|.+.|.+..|..-++.+++.=+.. .......++.+|.+.|..+.|.
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 336677888888888888888887762221 1234456677777777776443
No 202
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.17 E-value=0.002 Score=45.46 Aligned_cols=58 Identities=16% Similarity=0.226 Sum_probs=39.9
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006624 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
+...+.+.|++++|.+.|+++++..+ -+...+..+...+...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDP--DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCST--THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44566777777777777777777664 45666777777777777777777777777654
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.02 E-value=0.017 Score=53.77 Aligned_cols=98 Identities=8% Similarity=0.087 Sum_probs=51.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-CHHHHHHHHH
Q 006624 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPT--ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFP-DTVTYSALIS 239 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~ 239 (638)
|...+..+.+.|++++|...|+.+.+..+... ..++..+...|...|++++|...|+.+.+..+..| ....+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333334445666666666666655422211 24555566666666666666666666665432111 1233334445
Q ss_pred HHHccCChHHHHHHHHHHHHC
Q 006624 240 AFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 240 ~~~~~g~~~~A~~~~~~m~~~ 260 (638)
.+...|+.++|.++|+.+++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 555566666666666666654
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.00 E-value=0.017 Score=53.77 Aligned_cols=100 Identities=15% Similarity=0.073 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCC--CCCHHHHHHHH
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFP-DTVTYSALISAFGKLGRDISAIRLFDEMKENGL--QPTAKIYTTLV 273 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li 273 (638)
.|......+.+.|++++|+..|+.+++..+..+ ....+..+...|...|++++|...|+.+.+.-. +.....+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444556777777777777776553211 024556666777777777777777777765410 11234455556
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC
Q 006624 274 SIYFKLGEVEKALGLVQEMKGKG 296 (638)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~m~~~~ 296 (638)
..+...|+.++|.++|+.+.+.-
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 66667777777777777776653
No 205
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.93 E-value=0.25 Score=50.16 Aligned_cols=88 Identities=18% Similarity=0.285 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh---------
Q 006624 443 AAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVY--------- 513 (638)
Q Consensus 443 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--------- 513 (638)
.+...+...+.+...+.-|.++|..+-.. ..+++.....++|.+|..+-++..+. .||+.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAE 816 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhh
Confidence 34444444444555555555555555331 23445555566666666665554442 23321
Q ss_pred --hHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006624 514 --TYNALMSGMVRAGMIDDAYSLLRRMEED 541 (638)
Q Consensus 514 --~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 541 (638)
-+.-.-.+|.++|+-.+|.++++++...
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1222234566677777777777776653
No 206
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.87 E-value=0.45 Score=45.45 Aligned_cols=216 Identities=14% Similarity=0.050 Sum_probs=120.2
Q ss_pred cchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhCCCHHH
Q 006624 103 VEINVKIQFFKWAGRRRNFEHNSTTYMALIRCL--DETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNIL--GKAKMVNK 178 (638)
Q Consensus 103 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~ 178 (638)
..+..+.+.|+-..+.+| |..|-..+ .-.|+-..|.++-.+..+. ...|...+..++.+- .-.|+++.
T Consensus 67 ~sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~ 138 (531)
T COG3898 67 ESPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYED 138 (531)
T ss_pred hCcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHH
Confidence 446777777876666554 33443333 3467777887777665432 344444455554443 34688888
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHH----HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 006624 179 ALSIFYQIKSRKCKPTANTYNSMILM----LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLF 254 (638)
Q Consensus 179 A~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 254 (638)
|.+-|+.|.. ++.+-..=+++ --+.|..+.|..+-+..-..-+ .-...+...+...|..|+++.|++++
T Consensus 139 Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap--~l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 139 ARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP--QLPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred HHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc--CCchHHHHHHHHHHhcCChHHHHHHH
Confidence 8888888876 33333222222 2356788888888777766554 34566777888888888888888888
Q ss_pred HHHHHCC-CCCCHHHH--HHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 255 DEMKENG-LQPTAKIY--TTLVSIY---FKLGEVEKALGLVQEMKGKGCALTVY-TYTELIKGLGRAGRVEDAYGLFMNM 327 (638)
Q Consensus 255 ~~m~~~g-~~~~~~~~--~~li~~~---~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~ 327 (638)
+.-.+.. +.++..-- ..|+.+- .-.-+...|.+.-.+..+. .||.. .-..-...+.+.|+..++-.+++.+
T Consensus 212 d~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~a 289 (531)
T COG3898 212 DAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETA 289 (531)
T ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHH
Confidence 7665432 23332211 1111110 0112334444444333332 22221 1122345566666666666666666
Q ss_pred HHcCCCCC
Q 006624 328 LKEGCKPD 335 (638)
Q Consensus 328 ~~~~~~p~ 335 (638)
-+..+.|+
T Consensus 290 WK~ePHP~ 297 (531)
T COG3898 290 WKAEPHPD 297 (531)
T ss_pred HhcCCChH
Confidence 66655544
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.85 E-value=0.0059 Score=44.24 Aligned_cols=56 Identities=16% Similarity=0.101 Sum_probs=28.7
Q ss_pred HHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 169 ILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 169 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.|.+.+++++|.++++.+...++. ++..|......+.+.|++++|.+.|+...+..
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 344555555555555555554332 44445555555555555555555555555544
No 208
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.81 E-value=0.52 Score=45.34 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=58.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 006624 444 AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMV 523 (638)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 523 (638)
+.+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-..+... +.++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 33444455555666666555544432 25566666666666666666655544321 123355666666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 524 RAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTK 572 (638)
Q Consensus 524 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 572 (638)
+.|...+|..+..++ + + ..-+..|.+.|++.+|.+.--+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHHHH
Confidence 666666666655551 1 1 2344556666666666555443
No 209
>PRK15331 chaperone protein SicA; Provisional
Probab=96.78 E-value=0.11 Score=43.58 Aligned_cols=94 Identities=10% Similarity=-0.016 Sum_probs=70.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc
Q 006624 164 SEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243 (638)
Q Consensus 164 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (638)
....--+...|++++|..+|.-+.-.++. +..-|..|...+-..+++++|+..|......+. .|...+......+..
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~--~dp~p~f~agqC~l~ 117 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK--NDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--CCCCccchHHHHHHH
Confidence 34445566788888888888888776544 566677777777788888888888888766554 455556667778888
Q ss_pred cCChHHHHHHHHHHHHC
Q 006624 244 LGRDISAIRLFDEMKEN 260 (638)
Q Consensus 244 ~g~~~~A~~~~~~m~~~ 260 (638)
.|+.+.|...|+...++
T Consensus 118 l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 118 MRKAAKARQCFELVNER 134 (165)
T ss_pred hCCHHHHHHHHHHHHhC
Confidence 88888888888888773
No 210
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.77 E-value=0.4 Score=43.38 Aligned_cols=181 Identities=13% Similarity=0.107 Sum_probs=103.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006624 163 LSEIVNILGKAKMVNKALSIFYQIKSRKC--KPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
+..-+..-.+.|++++|.+.|+.+....+ +-...+.-.++-++.+.+++++|+..+++.....+.+||. .|..-|.+
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Ylkg 115 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKG 115 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHH
Confidence 33344445677889999999988876622 2234556667778888999999999999998888765554 34444444
Q ss_pred HHcc-------CChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006624 241 FGKL-------GRDI---SAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKG 310 (638)
Q Consensus 241 ~~~~-------g~~~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 310 (638)
++.. .|.. +|..-|++++.+ -||. .-...|......+... =...=..+.+.
T Consensus 116 Ls~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS-------------~Ya~dA~~~i~~~~d~----LA~~Em~Iary 176 (254)
T COG4105 116 LSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNS-------------RYAPDAKARIVKLNDA----LAGHEMAIARY 176 (254)
T ss_pred HHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCC-------------cchhhHHHHHHHHHHH----HHHHHHHHHHH
Confidence 4422 1222 233333333333 1221 1112222222222110 00011234567
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 311 LGRAGRVEDAYGLFMNMLKEGCKP---DIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 311 ~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 364 (638)
|.+.|.+..|..-+++|++. .+- ....+-.+..+|...|-.++|.+.-+-+..
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 78888888888888888876 221 223455566777778887777776666554
No 211
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.73 E-value=0.4 Score=46.65 Aligned_cols=94 Identities=14% Similarity=0.127 Sum_probs=64.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 130 ALIRCLDETRMIGVMWKSIQDMVRST---CVMGPSVLSEIVNILGK---AKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
.++-.|....+|+.++++++.+.... ...++.+-...+-++-+ .|+.++|++++..+......+++++|..+++
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44456888999999999999987641 12234444455556666 8899999999998666656778888888887
Q ss_pred HHHhc---------CCHhHHHHHHHHHHh
Q 006624 204 MLMQE---------GYYEKIHELYNEMCN 223 (638)
Q Consensus 204 ~~~~~---------g~~~~A~~~~~~~~~ 223 (638)
.|-.. ...++|++.|.+.-.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 76431 124555666655544
No 212
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=1 Score=47.53 Aligned_cols=215 Identities=17% Similarity=0.216 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhC----C------------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRS----T------------CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSR 189 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 189 (638)
.+.+.+++++...+++-.-.-++.+..+. + ..........-+..+.+...++-|+.+-+.-
T Consensus 284 ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~--- 360 (933)
T KOG2114|consen 284 SSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQ--- 360 (933)
T ss_pred cchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhc---
Confidence 45566667777666665333333332221 1 0112234556667777777888887765442
Q ss_pred CCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH
Q 006624 190 KCKPT--ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAK 267 (638)
Q Consensus 190 ~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 267 (638)
+..++ ........+-+.+.|++++|...|-+-...-. | ..++.-|....+..+-..+++.+.+.|+. +..
T Consensus 361 ~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le--~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~d 432 (933)
T KOG2114|consen 361 HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE--P-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSD 432 (933)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC--h-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cch
Confidence 11111 22233444556678888888888877654221 2 23556666667777778888888888864 666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006624 268 IYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLG 347 (638)
Q Consensus 268 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 347 (638)
.-..|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++|..+-..... .......++ -
T Consensus 433 httlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e 501 (933)
T KOG2114|consen 433 HTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---E 501 (933)
T ss_pred hHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---H
Confidence 66788889999988888777666544 2221 11234556667777777777665544332 233333333 3
Q ss_pred ccCCHHHHHHHHHHH
Q 006624 348 RAGRLEDALKLFNKM 362 (638)
Q Consensus 348 ~~g~~~~A~~~~~~~ 362 (638)
..+++++|++.+..+
T Consensus 502 ~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 502 DLHNYEEALRYISSL 516 (933)
T ss_pred HhcCHHHHHHHHhcC
Confidence 457788888888776
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.61 E-value=0.0075 Score=44.39 Aligned_cols=26 Identities=19% Similarity=0.461 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMC 222 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 222 (638)
+|+.+...|...|++++|++.|++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44445555555555555555555443
No 214
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.61 E-value=0.057 Score=43.68 Aligned_cols=100 Identities=15% Similarity=0.119 Sum_probs=54.6
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006624 511 DVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILG 590 (638)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 590 (638)
|..++..++.++++.|+.+....+++..-. +.++... ..+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 345666677777777777666666654331 1111000 0000 0111345566666667777
Q ss_pred HHHhcCCHHHHHHHHHHHHh-CCCCCCHhhHHHHHHHHhcc
Q 006624 591 CLSRAGMFEEAARLMKDMNA-KGFEYDQITYSSILEAVGKV 630 (638)
Q Consensus 591 ~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~ 630 (638)
+|+..|++..|.++++...+ .+++.+..+|..|++-+...
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 77767777777776666554 55666666666666654433
No 215
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.61 E-value=0.46 Score=48.32 Aligned_cols=102 Identities=19% Similarity=0.164 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 006624 300 TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIK 379 (638)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 379 (638)
+..+...+...+.+...+.-|-++|..|-. ...++......+++++|..+-+...+ ..||+. ....+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy--~pyaq 812 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVY--MPYAQ 812 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc--cccccc--chHHH
Confidence 444555555566667777778888877643 23456677788888888888877655 223432 11111
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006624 380 SLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKG 437 (638)
Q Consensus 380 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 437 (638)
.+....+.. -.-.+|.+.|+-.+|.++++++....
T Consensus 813 wLAE~DrFe-----------------------EAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 813 WLAENDRFE-----------------------EAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred HhhhhhhHH-----------------------HHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 122222211 22345778888888888888876543
No 216
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.58 E-value=0.74 Score=44.03 Aligned_cols=252 Identities=15% Similarity=0.126 Sum_probs=151.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH----hcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006624 349 AGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLF----ESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVE 424 (638)
Q Consensus 349 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 424 (638)
.|+++.|.+-|+.|.. |..+-..=+++++ +.|. .+++..+-+.....- +.-...+...+...|..|+++
T Consensus 133 eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Ga-reaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 133 EGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGA-REAARHYAERAAEKA-PQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred cCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhccc-HHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChH
Confidence 4666666666666654 2222222222222 2233 233344444433321 223456778888999999999
Q ss_pred HHHHHHHHHHhCC-CCCCHhh--HHHHHHH--HH-ccCCHHHHHHHHHHHHHcCCCCcHHH-HHHHHHHHHhcCCHHHHH
Q 006624 425 KAHLLLEEMEEKG-FPPCPAA--YCSLING--YG-KAKRYEAANELFLELKEYCGCSSARV-YAVMIKHFGKCGRLSDAV 497 (638)
Q Consensus 425 ~A~~~~~~~~~~~-~~~~~~~--~~~li~~--~~-~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~ 497 (638)
.|+++++.-.+.. +.++..- -..|+.+ -. -..+...|...-.+..+ ..|+..- --.-...+.+.|+..++-
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~ 283 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGS 283 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhh
Confidence 9999998765432 2333321 1112211 11 12345566666666555 3344322 233456788999999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006624 498 DLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED-GCVP-DINSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 498 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
.+++.+-+..-.|+ .+. +....+.|+ .+..-+++.... .++| +.++...+..+-...|++..|..--+....
T Consensus 284 ~ilE~aWK~ePHP~--ia~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r 357 (531)
T COG3898 284 KILETAWKAEPHPD--IAL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR 357 (531)
T ss_pred hHHHHHHhcCCChH--HHH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 99999998754454 332 222345554 344444433321 2344 466777788888899999998887777764
Q ss_pred CCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCH
Q 006624 576 SEIKPDAVSYNTILGCLSRA-GMFEEAARLMKDMNAKGFEYDQ 617 (638)
Q Consensus 576 ~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~p~~ 617 (638)
..|....|..|.+.-... ||-.++..++.+..+..-.|+.
T Consensus 358 --~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW 398 (531)
T COG3898 358 --EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAW 398 (531)
T ss_pred --hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcc
Confidence 468888888888876555 9999999999999877655553
No 217
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.55 E-value=0.09 Score=44.34 Aligned_cols=72 Identities=18% Similarity=0.264 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHhhHH
Q 006624 549 SHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA-----KGFEYDQITYS 621 (638)
Q Consensus 549 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~ 621 (638)
....++..+...|++++|.++.+++.... +-|...|..++.+|...|+..+|.++|+++.+ .|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 34456666778888888888888888643 23677888888888888888888888877642 48888877643
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.51 E-value=0.0092 Score=43.91 Aligned_cols=62 Identities=24% Similarity=0.305 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 548 NSHNIILNGLAKSGGPKRAMEIFTKMQHS----EI-KPD-AVSYNTILGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 548 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 609 (638)
.+++.+...|...|++++|+..|++..+. |- .|+ ..++..+..++...|++++|.+++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555666666666666666655431 11 111 3456666666666666666666666654
No 219
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.51 E-value=0.019 Score=41.57 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=37.5
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006624 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
..|.+.+++++|++.++.+...++ .+...+......+.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP--DDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc--ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 456667777777777777776654 45566666666666777777777777766664
No 220
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.49 E-value=0.031 Score=47.16 Aligned_cols=70 Identities=21% Similarity=0.423 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-----CCCCCCHHH
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE-----NGLQPTAKI 268 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~ 268 (638)
+...++..+...|++++|..+.+.+....| -|...|..+|.++...|+..+|.++|+.+.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP--~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDP--YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST--T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 445566677778888888888888887775 5777888888888888888888888876643 366666554
No 221
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.40 E-value=0.89 Score=44.29 Aligned_cols=76 Identities=11% Similarity=0.073 Sum_probs=45.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHHc---cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006624 412 ILIDGFCKTNRVEKAHLLLEEMEEKG---FPPCPAAYCSLINGYGK---AKRYEAANELFLELKEYCGCSSARVYAVMIK 485 (638)
Q Consensus 412 ~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 485 (638)
.++-+|....+++..+++.+.+.... +......-....-++.+ .|+.++|.+++..+......+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44445777777777777777776542 12222333334445555 6677777777777555556666666666665
Q ss_pred HH
Q 006624 486 HF 487 (638)
Q Consensus 486 ~~ 487 (638)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
No 222
>PRK15331 chaperone protein SicA; Provisional
Probab=96.39 E-value=0.28 Score=41.16 Aligned_cols=92 Identities=9% Similarity=-0.051 Sum_probs=68.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 006624 271 TLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAG 350 (638)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 350 (638)
....-+...|++++|..+|+-+...++. +...+..|..++-..+++++|+..|......+.. |...+--...+|...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhC
Confidence 3445566788888888888888776654 6667777777888888888888888777665432 4444555677888888
Q ss_pred CHHHHHHHHHHHHH
Q 006624 351 RLEDALKLFNKMEA 364 (638)
Q Consensus 351 ~~~~A~~~~~~~~~ 364 (638)
+.+.|...|....+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 88888888888766
No 223
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=1.7 Score=45.40 Aligned_cols=101 Identities=11% Similarity=0.085 Sum_probs=57.4
Q ss_pred hCCCCCCHHHHHH-----HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC--HhHHHHHHHHHHhCC
Q 006624 153 RSTCVMGPSVLSE-----IVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY--YEKIHELYNEMCNEG 225 (638)
Q Consensus 153 ~~~~~~~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~ 225 (638)
+-|.+.+..-|.. +++-+...+.+..|+++-..+...-.. +...|.....-+.+..+ -+++++..++=....
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3456665555533 566677777888888877766433111 14455555555555532 233444443333321
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 006624 226 NCFPDTVTYSALISAFGKLGRDISAIRLFDE 256 (638)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 256 (638)
. ....+|..+.+.....|+.+-|..+++.
T Consensus 504 ~--~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 504 L--TPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred C--CCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 1 3455677777777778888888777754
No 224
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=1.9 Score=45.76 Aligned_cols=179 Identities=11% Similarity=0.099 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPS----VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNS 200 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 200 (638)
......-+..+.+...+.-|+.+.+.- ..+.. ++....+-+.+.|++++|...|-+-... .+| ..
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~-----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~ 402 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQ-----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SE 402 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HH
Confidence 345667788889999999998887742 22333 3444555667889999999988776654 222 23
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006624 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
++.-|....+...-..+++.+.+.|. .+...-..|+..|.+.++.++-.++.+.-. .|.- ..-....+..+.+.+
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gl--a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sn 477 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGL--ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSN 477 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHccc--ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhC
Confidence 55666777777778888888888887 566677889999999999988777765544 2211 112345667777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 281 EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNM 327 (638)
Q Consensus 281 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 327 (638)
-.++|.-+-..... .......++ -..|++++|++.+..+
T Consensus 478 yl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 478 YLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred hHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 77777766655433 333444443 3568899999888765
No 225
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.28 E-value=0.53 Score=44.45 Aligned_cols=205 Identities=13% Similarity=0.039 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHhhC-CCCC---CH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRS--TCVMG---PSVLSEIVNILGKAKMVNKALSIFYQIKSR-KCKP---TA 195 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~ 195 (638)
..+|..+..++.+.|.+.++...--.-+.. .+..+ -..|..+.+.+-+.-++.+++.+-..-... |..| ..
T Consensus 43 f~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~g 122 (518)
T KOG1941|consen 43 FRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGG 122 (518)
T ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccc
Confidence 357788888888999888776644322221 01111 234555556666655666666655444332 2222 22
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC----CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC----CCCCCHH
Q 006624 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNC----FPDTVTYSALISAFGKLGRDISAIRLFDEMKEN----GLQPTAK 267 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~~~~ 267 (638)
....++..++...+.++++++.|+...+.... ......+-.|...|.+..|+++|.-+..+..+. ++..=..
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 34556778888899999999999998754321 123357889999999999999998877766542 2221111
Q ss_pred -----HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006624 268 -----IYTTLVSIYFKLGEVEKALGLVQEMKG----KGCAL-TVYTYTELIKGLGRAGRVEDAYGLFMNMLK 329 (638)
Q Consensus 268 -----~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 329 (638)
....+.-++...|++.+|.+..++..+ .|-.+ -......+.+.|...|+.+.|+.-|++...
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 223344566778888888877776543 34221 233455678889999999999988887654
No 226
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.73 Score=42.58 Aligned_cols=123 Identities=12% Similarity=0.067 Sum_probs=64.2
Q ss_pred HHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChH
Q 006624 169 ILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDI 248 (638)
Q Consensus 169 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 248 (638)
.....|++.+|...|......... +...--.++.+|...|+.+.|..++..+...... ........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~-~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD-KAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchh-hHHHHHHHHHHHHHHHhcCC
Confidence 445566666666666666555333 3445555666666667777766666665443221 11111222333444444444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 249 SAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 249 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 295 (638)
+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+..+
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444444332 225555566666666666666666665555443
No 227
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.16 E-value=1.5 Score=42.97 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=89.1
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH-HHHH
Q 006624 512 VYTYNALMSGMVRAGMIDDAYSLLRRMEEDG-CVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSY-NTIL 589 (638)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~ 589 (638)
...|..++.+..+..-.+.|..+|-++.+.| ..+++..+++++.-++ .|+...|.++|+.-... -||...| +..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4456667777777888899999999999988 6678888999888665 57889999999985543 3555444 4566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHhccCCcc
Q 006624 590 GCLSRAGMFEEAARLMKDMNAKGFEYD--QITYSSILEAVGKVDEDR 634 (638)
Q Consensus 590 ~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~ 634 (638)
.-+.+-++-+.|..+|+...+. +..+ ..+|..+|+-=.+.|+..
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN 519 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLN 519 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchH
Confidence 7778899999999999966543 2333 347888888777777653
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.10 E-value=0.092 Score=51.67 Aligned_cols=67 Identities=12% Similarity=-0.036 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 006624 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTA---NTYNSMILMLMQEGYYEKIHELYNEMCNE 224 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 224 (638)
+.+...++.+..+|.+.|++++|+..|++..+..+. +. .+|..+..+|...|++++|++.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445666777777777777777777777776665332 12 34666777777777777777777777664
No 229
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.10 E-value=0.076 Score=48.32 Aligned_cols=98 Identities=17% Similarity=0.189 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCH-HHHHHHH
Q 006624 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCK--PTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDT-VTYSALI 238 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~ 238 (638)
.|+.-+. +.+.|++..|...|...++..+. -...++..|...+...|++++|...|..+.+..+..|.. ..+..|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3444433 34556677777777777666332 234456667777777777777777777777765543333 5666677
Q ss_pred HHHHccCChHHHHHHHHHHHHC
Q 006624 239 SAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
....+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777777777777777777765
No 230
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.08 E-value=0.094 Score=51.60 Aligned_cols=66 Identities=8% Similarity=-0.071 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHhhC
Q 006624 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGP----SVLSEIVNILGKAKMVNKALSIFYQIKSR 189 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 189 (638)
+.+...|+.+..+|.+.|++++|+..|+..+.. .|+. .+|..+..+|...|++++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 446789999999999999999999999998884 4443 35899999999999999999999998875
No 231
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.05 E-value=0.57 Score=37.34 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006624 547 INSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGF 613 (638)
Q Consensus 547 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 613 (638)
....+..+..+...|+-+.-.++++.+.. +-.+++...-.+..+|.+.|+..++.+++++.-+.|+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444556666777777777777777654 2346666677777777777777777777777777664
No 232
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.04 E-value=1.4 Score=41.79 Aligned_cols=162 Identities=9% Similarity=-0.019 Sum_probs=85.3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHH-------HHHHHHHHHhCC-CHHHHHHHHHHHhhC--------CCCCCH----
Q 006624 136 DETRMIGVMWKSIQDMVRSTCVMGPSV-------LSEIVNILGKAK-MVNKALSIFYQIKSR--------KCKPTA---- 195 (638)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~g-~~~~A~~~~~~~~~~--------~~~~~~---- 195 (638)
.+.|+++.|..++.+........++.. +..+.....+.+ +++.|..++++..+. ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 456777777777766544321222222 222333334445 777776666554322 122222
Q ss_pred -HHHHHHHHHHHhcCCH---hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006624 196 -NTYNSMILMLMQEGYY---EKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTT 271 (638)
Q Consensus 196 -~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 271 (638)
.++..++.+|...+.. ++|..+.+.+....+ .....+..-+..+.+.++.+++.+.+.+|+..- .-....+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~--~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYG--NKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC--CCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 3456667777776654 456666666665553 224445455666666778888888888887752 212333444
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHHhCCCCCCH
Q 006624 272 LVSIY---FKLGEVEKALGLVQEMKGKGCALTV 301 (638)
Q Consensus 272 li~~~---~~~g~~~~A~~~~~~m~~~~~~~~~ 301 (638)
+++.+ ... ....|...+..+....+.|..
T Consensus 161 ~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 161 ILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 44433 332 234555555555544344333
No 233
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.03 E-value=0.24 Score=40.48 Aligned_cols=84 Identities=13% Similarity=0.184 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHH
Q 006624 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKC--KPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSAL 237 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 237 (638)
+..+..-.....+.|++++|.+.|+.+..+-+ .-...+...++.+|.+.+++++|+..+++.++.++.+|+ ..|...
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y 88 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYY 88 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHH
Confidence 34444455566778899999999999887722 224556677888999999999999999999998887665 445555
Q ss_pred HHHHHcc
Q 006624 238 ISAFGKL 244 (638)
Q Consensus 238 ~~~~~~~ 244 (638)
+.+++..
T Consensus 89 ~~gL~~~ 95 (142)
T PF13512_consen 89 MRGLSYY 95 (142)
T ss_pred HHHHHHH
Confidence 5555543
No 234
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.99 E-value=1.8 Score=42.52 Aligned_cols=128 Identities=12% Similarity=0.138 Sum_probs=78.2
Q ss_pred HHccCC-HHHHHHHHHHHHHcCCCCcHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHhCCCCCCH----hhHHHHH
Q 006624 452 YGKAKR-YEAANELFLELKEYCGCSSARVYAVMI----KHFGK---CGRLSDAVDLFNEMKKLRCKPDV----YTYNALM 519 (638)
Q Consensus 452 ~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~ 519 (638)
+-+.|. -++|..+++.+.+- .+-|...-|.+. ..|.. ...+..-+.+-+-+.+.|++|-. ..-|.|.
T Consensus 389 lW~~g~~dekalnLLk~il~f-t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQF-TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 334444 66677777776663 222332222221 12211 12333444444445666776643 3344454
Q ss_pred HH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 006624 520 SG--MVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNT 587 (638)
Q Consensus 520 ~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 587 (638)
++ +..+|++.++.-.-.-+.+ +.|++.+|..++-++....++++|..++..+ +|+..+++.
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 43 4578999998766555555 6899999999999999999999999999876 466666654
No 235
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.99 E-value=0.6 Score=43.62 Aligned_cols=154 Identities=9% Similarity=0.008 Sum_probs=110.0
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcC
Q 006624 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAK----IYTTLVSIYFKLG 280 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g 280 (638)
+...|++.+|...++++++..| .|...+.-.-.++...|+.+.-...++++... ..+|.. .-..+.-++..+|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~P--tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYP--TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHhCc--hhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhc
Confidence 3457888888888999998776 67888888888888999998888888888754 224443 3344555667889
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHccCCHHHHHH
Q 006624 281 EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK---PDIVLINNLINVLGRAGRLEDALK 357 (638)
Q Consensus 281 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~ 357 (638)
-+++|++.-++..+.+.. |...-.+..+.+...|++.++.++..+-...=-. .-..-|--..-.+...+.++.|++
T Consensus 190 ~y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 999999999988887755 7888888888888999999998877654321000 001112223334556688999999
Q ss_pred HHHHH
Q 006624 358 LFNKM 362 (638)
Q Consensus 358 ~~~~~ 362 (638)
+|+.-
T Consensus 269 IyD~e 273 (491)
T KOG2610|consen 269 IYDRE 273 (491)
T ss_pred HHHHH
Confidence 88764
No 236
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.41 Score=46.15 Aligned_cols=140 Identities=17% Similarity=0.079 Sum_probs=96.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006624 342 LINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTN 421 (638)
Q Consensus 342 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 421 (638)
-.+.|.+.|++..|..-|+++...= .+...-+. +. .+..... -..++..+.-++.+.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l-------------~~~~~~~~-ee-~~~~~~~-------k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFL-------------EYRRSFDE-EE-QKKAEAL-------KLACHLNLAACYLKLK 271 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHh-------------hccccCCH-HH-HHHHHHH-------HHHHhhHHHHHHHhhh
Confidence 3556788899999998888875410 00111111 11 1111111 2346677888999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHH-HHHHH
Q 006624 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSD-AVDLF 500 (638)
Q Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~ 500 (638)
++..|++.-+..+..+ ++|..+...-..++...|+++.|+..|+++.+. .|.|-.+-+.++.+-.+..+..+ ..++|
T Consensus 272 ~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~-~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL-EPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred hHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987 888889888899999999999999999999986 34455556666666555544433 35666
Q ss_pred HHHHh
Q 006624 501 NEMKK 505 (638)
Q Consensus 501 ~~m~~ 505 (638)
..|..
T Consensus 350 ~~mF~ 354 (397)
T KOG0543|consen 350 ANMFA 354 (397)
T ss_pred HHHhh
Confidence 66654
No 237
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.14 Score=49.24 Aligned_cols=96 Identities=16% Similarity=0.080 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 006624 195 ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP-TAKIYTTLV 273 (638)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li 273 (638)
..+++.+...+.+.+++.+|++.-+..+...+ +|+.....=..++...|+++.|+..|+++.+. .| |..+-+-|+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~--~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~ 332 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDP--NNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELI 332 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC--CchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 34556666677777777777777777777665 66666666677777777777777777777764 34 333444455
Q ss_pred HHHHhcCCH-HHHHHHHHHHHh
Q 006624 274 SIYFKLGEV-EKALGLVQEMKG 294 (638)
Q Consensus 274 ~~~~~~g~~-~~A~~~~~~m~~ 294 (638)
.+--+.... ++..++|..|..
T Consensus 333 ~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 333 KLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 444444443 333566666654
No 238
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.81 E-value=0.27 Score=38.92 Aligned_cols=92 Identities=21% Similarity=0.148 Sum_probs=54.1
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHcc
Q 006624 168 NILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDT---VTYSALISAFGKL 244 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~ 244 (638)
.++...|+.+.|++.|.+....-+ -....||.-..++--+|+.++|++-+++.++.... ... ..|.--...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~-~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAGD-QTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHh
Confidence 345566677777777766665532 25666777777776677777777777666654432 111 1222233445556
Q ss_pred CChHHHHHHHHHHHHCC
Q 006624 245 GRDISAIRLFDEMKENG 261 (638)
Q Consensus 245 g~~~~A~~~~~~m~~~g 261 (638)
|+.+.|..-|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 67777777776666655
No 239
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.71 E-value=0.18 Score=45.90 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC-C-CHHHHHHHH
Q 006624 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTC--VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK-P-TANTYNSMI 202 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~ 202 (638)
.|+.-+. +.+.|++..|...|..+++... .-.+..+.-|..++...|++++|..+|..+.+..++ | -++++--+.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 5766655 4567889999999999998631 234567788999999999999999999999876322 2 357888899
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCC
Q 006624 203 LMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
....+.|+-++|...|+++.+..+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCC
Confidence 999999999999999999999874
No 240
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.66 E-value=0.32 Score=39.40 Aligned_cols=99 Identities=10% Similarity=-0.023 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
|..++..++.++++.|+.+....+++..-.- .++... ..+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI--~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGI--DVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCC--CCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 4567888888899999988888888765432 111000 0000 1122234566666666666
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006624 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
+|+.+|++..|+++.+...+..+.+-+...|..|+.-..
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 666666666666666666655444344556666655443
No 241
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.66 E-value=3 Score=42.61 Aligned_cols=92 Identities=9% Similarity=0.097 Sum_probs=39.0
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-ccCChHHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHH
Q 006624 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG-KLGRDISAIRLFDEMKEN-GLQ-PTAKIYTTLVSIYF 277 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~-g~~-~~~~~~~~li~~~~ 277 (638)
....-.+.|..+.+.++|++-+..-+ -....|.....-++ ..|+.+...+.|+..... |.. .....|-..|..-.
T Consensus 85 fA~~E~klg~~~~s~~Vfergv~aip--~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en 162 (577)
T KOG1258|consen 85 FADYEYKLGNAENSVKVFERGVQAIP--LSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFEN 162 (577)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHh
Confidence 33333445555555555555554221 22233333222222 234444444455444432 111 12333444444444
Q ss_pred hcCCHHHHHHHHHHHHh
Q 006624 278 KLGEVEKALGLVQEMKG 294 (638)
Q Consensus 278 ~~g~~~~A~~~~~~m~~ 294 (638)
.++++.....+++..++
T Consensus 163 ~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 163 GQKSWKRVANIYERILE 179 (577)
T ss_pred ccccHHHHHHHHHHHHh
Confidence 45555555555555544
No 242
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.64 E-value=0.34 Score=39.69 Aligned_cols=86 Identities=6% Similarity=-0.086 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRST--CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
...+-.-.....+.|++.+|.+.|+.+...- .+-...+-..++.+|.+.|++++|...+++..+..+..-...|-..+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 3444455666778999999999999998762 12345667788999999999999999999999986654455666666
Q ss_pred HHHHhcCC
Q 006624 203 LMLMQEGY 210 (638)
Q Consensus 203 ~~~~~~g~ 210 (638)
.+++.-.+
T Consensus 90 ~gL~~~~~ 97 (142)
T PF13512_consen 90 RGLSYYEQ 97 (142)
T ss_pred HHHHHHHH
Confidence 66654433
No 243
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.59 E-value=0.78 Score=47.12 Aligned_cols=116 Identities=18% Similarity=0.111 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHH-HHHHHHcCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHH
Q 006624 491 GRLSDAVDLFNEMKKLRCKPDVYTYNAL-MSGMVRAGMIDDAYSLLRRMEEDGC---VPDINSHNIILNGLAKSGGPKRA 566 (638)
Q Consensus 491 g~~~~A~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A 566 (638)
...+.|.++++.+.+. -|+...|... ...+...|+.++|++.|++...... +.....+--+...+.-.+++++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3445556666655553 3554444322 2334455666666666665442100 01122233344555566666666
Q ss_pred HHHHHHhhhCCCCCCHHHHHH-HHHHHHhcCCH-------HHHHHHHHHHH
Q 006624 567 MEIFTKMQHSEIKPDAVSYNT-ILGCLSRAGMF-------EEAARLMKDMN 609 (638)
Q Consensus 567 ~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~g~~-------~~A~~~~~~m~ 609 (638)
.+.|.++.+.+-. ...+|.- ...++...|+. ++|.++|++..
T Consensus 325 ~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 325 AEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 6666666653211 2222222 22233445555 56666655543
No 244
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.53 E-value=1.1 Score=46.07 Aligned_cols=162 Identities=17% Similarity=0.078 Sum_probs=94.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh------hHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCcHHH
Q 006624 410 YSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPA------AYCSLINGYGK----AKRYEAANELFLELKEYCGCSSARV 479 (638)
Q Consensus 410 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 479 (638)
+..++....-.|+-+.+++++.+..+.+---.+. .|...+..++. ....+.|.+++..+.+. . |+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~-y-P~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR-Y-PNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh-C-CCcHH
Confidence 4455666667788888888887765533111121 23333333332 34677888888888774 2 34333
Q ss_pred H-HHHHHHHHhcCCHHHHHHHHHHHHhCC-CC--CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006624 480 Y-AVMIKHFGKCGRLSDAVDLFNEMKKLR-CK--PDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILN 555 (638)
Q Consensus 480 ~-~~li~~~~~~g~~~~A~~~~~~m~~~~-~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 555 (638)
| -.-.+.+...|++++|++.|++..... -. .....+--+...+.-.+++++|.+.|.++.+.. .-...+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 3 333455667788888888888654311 01 112334445566777888888888888888752 223334433332
Q ss_pred -HHHhcCCH-------HHHHHHHHHhh
Q 006624 556 -GLAKSGGP-------KRAMEIFTKMQ 574 (638)
Q Consensus 556 -~~~~~g~~-------~~A~~~~~~m~ 574 (638)
++...|+. ++|.++|.+..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 33456666 77777777764
No 245
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.53 E-value=0.31 Score=49.20 Aligned_cols=157 Identities=17% Similarity=0.180 Sum_probs=92.2
Q ss_pred HHHHhcCChHHHHHHHH--HHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 006624 133 RCLDETRMIGVMWKSIQ--DMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY 210 (638)
Q Consensus 133 ~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 210 (638)
+...-+++++++.+.+. +++. .......+.++..+.+.|..+.|+.+-. |+. .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~---~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP---NIPKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG---G--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc---cCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCC
Confidence 44455677777666654 1221 1224557778888888888888887632 332 23445567788
Q ss_pred HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 211 YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQ 290 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 290 (638)
++.|.+..++. ++...|..|.....+.|+++-|.+.|.+..+ |..|+-.|.-.|+.++-.++.+
T Consensus 334 L~~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 334 LDIALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp HHHHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHH
Confidence 88887764332 5667788888888888888888887766543 4566667777788777777776
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 291 EMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMN 326 (638)
Q Consensus 291 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 326 (638)
.....|- ++....++.-.|++++..+++.+
T Consensus 398 ~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 398 IAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 6665542 34444455556777766666544
No 246
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.51 E-value=0.52 Score=47.65 Aligned_cols=157 Identities=14% Similarity=0.094 Sum_probs=91.2
Q ss_pred HHhcCCHHHHHHHHHHHH-hCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHH
Q 006624 417 FCKTNRVEKAHLLLEEME-EKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSD 495 (638)
Q Consensus 417 ~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 495 (638)
..-.++++.+.++.+.-. -..+ +..-...++..+-+.|-.+.|+++..+-.. -.....++|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHH
Confidence 445677777666664211 1111 244567777777888888888776554322 1334456788888
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006624 496 AVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 496 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
|.++.++. ++...|..|.......|+++-|.+.|.+..+ |..|+-.|.-.|+.+.-.++.+....
T Consensus 337 A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 337 ALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 77665432 3666888888888888888888888877543 44566667777887777777766665
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 576 SEIKPDAVSYNTILGCLSRAGMFEEAARLMKDM 608 (638)
Q Consensus 576 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 608 (638)
.|- ++....++.-.|+.++..+++.+-
T Consensus 402 ~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 402 RGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 542 444555556667777777666543
No 247
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.28 E-value=1.5 Score=36.59 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=11.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 006624 516 NALMSGMVRAGMIDDAYSLLRRM 538 (638)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~~ 538 (638)
..++..|.+.+-++++..++.++
T Consensus 73 ~~~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 73 EKVGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHcCcHHHHHHHHHhh
Confidence 33444455555555555555443
No 248
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.27 E-value=3 Score=40.21 Aligned_cols=101 Identities=14% Similarity=0.163 Sum_probs=49.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 006624 414 IDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRL 493 (638)
Q Consensus 414 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 493 (638)
+.-+...|+...|.++-.+.. -|+...|...+.+++..+++++-.++... .-++.-|..++.++.+.|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 333444555555555443331 34555555555555555555554443221 12234455555555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 006624 494 SDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSL 534 (638)
Q Consensus 494 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 534 (638)
.+|..+..++ ++..-+..|.+.|++.+|.+.
T Consensus 254 ~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 254 KEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 5555555441 112334455555555555543
No 249
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.24 E-value=2.3 Score=38.75 Aligned_cols=224 Identities=19% Similarity=0.131 Sum_probs=122.9
Q ss_pred cCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHhHHH
Q 006624 138 TRMIGVMWKSIQDMVRSTCV-MGPSVLSEIVNILGKAKMVNKALSIFYQIKSR-KCKPTANTYNSMILMLMQEGYYEKIH 215 (638)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 215 (638)
.+.+..+...+......... ............+...+++..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34445555555555443211 12455666666667777777777776666542 22335555666666666677777777
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHH-HHHccCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 216 ELYNEMCNEGNCFPDTVTYSALIS-AFGKLGRDISAIRLFDEMKENGL--QPTAKIYTTLVSIYFKLGEVEKALGLVQEM 292 (638)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 292 (638)
+.+......... +......... .+...|+++.|...+++...... ......+......+...++.+.+...+...
T Consensus 116 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPD--PDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCC--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 777777664432 1122222222 56667777777777777654211 012333333444455666777777777766
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 293 KGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 293 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 364 (638)
...........+..+...+...++++.|...+......... ....+..+...+...+..+.+...+.....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 65532213455666666666666777777777766664222 123333333344455556666666666554
No 250
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.23 E-value=2.2 Score=40.57 Aligned_cols=130 Identities=15% Similarity=0.329 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--cC----CHhHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHccCCh
Q 006624 176 VNKALSIFYQIKSRKCKPTANTYNSMILMLMQ--EG----YYEKIHELYNEMCNEGNC--FPDTVTYSALISAFGKLGRD 247 (638)
Q Consensus 176 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 247 (638)
+++...+++.|.+.|+..+..+|-+....+.. .. ...+|.++|+.|.+..+. .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34456677888888887777666553333222 12 245677888888776543 2344555555443 22332
Q ss_pred ----HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006624 248 ----ISAIRLFDEMKENGLQPTAK--IYTTLVSIYFKLGE--VEKALGLVQEMKGKGCALTVYTYTEL 307 (638)
Q Consensus 248 ----~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~l 307 (638)
+.+..+++.+.+.|+..+.. ....++........ ..++.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 34455555555555544322 22222222111111 23455555666666555555444443
No 251
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.99 E-value=2.6 Score=37.83 Aligned_cols=209 Identities=11% Similarity=0.086 Sum_probs=104.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
-...|.--..+|....+++.|...+.+..+. ...+ . ..|.....++.|.-+..++.+. .--+..|+--..
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~-yEnn-r------slfhAAKayEqaamLake~~kl--sEvvdl~eKAs~ 99 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENN-R------SLFHAAKAYEQAAMLAKELSKL--SEVVDLYEKASE 99 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhc-c------cHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHH
Confidence 3456777777788888888888877766541 1111 1 1222333455566666666554 112344556666
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC---C--CCCCHHHHHHHHHHHHh
Q 006624 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN---G--LQPTAKIYTTLVSIYFK 278 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---g--~~~~~~~~~~li~~~~~ 278 (638)
.|...|.++-|-..+++.-+. ...-+.++|++++.+.... + .+.-...+.....++.+
T Consensus 100 lY~E~GspdtAAmaleKAak~-----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr 162 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKAAKA-----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR 162 (308)
T ss_pred HHHHhCCcchHHHHHHHHHHH-----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence 777777777666555554321 1112333444444433211 0 00011223334445555
Q ss_pred cCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHccC
Q 006624 279 LGEVEKALGLVQEMKGK----GCALT-VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGC---KPDIVLINNLINVLGRAG 350 (638)
Q Consensus 279 ~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g 350 (638)
...+++|-..+.+-... .-.++ -..|...|-.+....++..|..+++.-.+.+- .-+..+...|+.+| ..|
T Consensus 163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~g 241 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEG 241 (308)
T ss_pred hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccC
Confidence 56665555444332211 01111 12344555556666777777777776544321 12444566666655 346
Q ss_pred CHHHHHHHHH
Q 006624 351 RLEDALKLFN 360 (638)
Q Consensus 351 ~~~~A~~~~~ 360 (638)
|.+++.+++.
T Consensus 242 D~E~~~kvl~ 251 (308)
T KOG1585|consen 242 DIEEIKKVLS 251 (308)
T ss_pred CHHHHHHHHc
Confidence 6666555543
No 252
>PRK11906 transcriptional regulator; Provisional
Probab=94.98 E-value=2.2 Score=42.50 Aligned_cols=118 Identities=13% Similarity=0.110 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHh---------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 006624 106 NVKIQFFKWAGRRRNFEHN-STTYMALIRCLDE---------TRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKM 175 (638)
Q Consensus 106 ~~a~~~f~~~~~~~~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 175 (638)
..|+.+|..+.......|+ ...|..+..++.. .....+|.++.+..++.+ +.|+.....+..+..-.|+
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcc
Confidence 5567777766533333332 3334333333221 112223444444444433 3344444444444444444
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 176 VNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 176 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
++.|..+|++....++. ...+|......+.-.|+.++|.+.+++..+..
T Consensus 354 ~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 354 AKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred hhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 55555555555444322 33334444444444455555555555544443
No 253
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.95 E-value=1.3 Score=35.33 Aligned_cols=89 Identities=17% Similarity=0.109 Sum_probs=42.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHH---HHHHHHHHHHccCC
Q 006624 276 YFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE-GCKPDIV---LINNLINVLGRAGR 351 (638)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~---~~~~l~~~~~~~g~ 351 (638)
+...|+++.|++.|.+.+..-+. ....||.-..++.-+|+.++|++-+++.++. |.. ... .|..-...|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 33445555555555555443222 4455555555555555555555555555442 211 111 22222334555566
Q ss_pred HHHHHHHHHHHHHCC
Q 006624 352 LEDALKLFNKMEALQ 366 (638)
Q Consensus 352 ~~~A~~~~~~~~~~~ 366 (638)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666665555444
No 254
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.94 E-value=3.5 Score=39.16 Aligned_cols=63 Identities=17% Similarity=0.204 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006624 267 KIYTTLVSIYFKLGEV---EKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 267 ~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
.++..++.+|...+.. ++|.++++.+...... ....+..-++.+.+.++.+++.+.+.+|+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3555666666666654 4455555555444322 2344444455566677777777777777765
No 255
>PRK11906 transcriptional regulator; Provisional
Probab=94.91 E-value=4.6 Score=40.33 Aligned_cols=163 Identities=16% Similarity=0.100 Sum_probs=96.2
Q ss_pred HHH--HHHHHHHHhc--C---CHhHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHH---------ccCChHHHHHHHHHHH
Q 006624 196 NTY--NSMILMLMQE--G---YYEKIHELYNEMCNEGNCFPD-TVTYSALISAFG---------KLGRDISAIRLFDEMK 258 (638)
Q Consensus 196 ~~~--~~l~~~~~~~--g---~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~---------~~g~~~~A~~~~~~m~ 258 (638)
..| ..++++.... + ..++|+.+|.+........|+ ...|..+...+. ...+..+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554442 2 246788888888833222233 333333322222 1234456777777777
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHH
Q 006624 259 ENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKP-DIV 337 (638)
Q Consensus 259 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~ 337 (638)
+.+ +-|..+...+..+..-.++++.|...|++....++. ...+|....-.+.-.|+.++|.+.+++..+..+.- ...
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 765 457777777777777777788888888888877654 45555555555667888888888888866643221 122
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHH
Q 006624 338 LINNLINVLGRAGRLEDALKLFNK 361 (638)
Q Consensus 338 ~~~~l~~~~~~~g~~~~A~~~~~~ 361 (638)
.....++.|+..+ ++.|.++|-+
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHHhh
Confidence 3333444555544 5666666544
No 256
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.86 E-value=2.7 Score=37.71 Aligned_cols=193 Identities=13% Similarity=0.096 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006624 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
..|.....+|....++++|...+.+..+. .+.+...|. ....++.|.-+.+++.+.. .-+..|+.-...
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kls---Evvdl~eKAs~l 100 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLS---EVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHH
Confidence 34556667777888888888877766532 111222221 2334556666666665532 223456666777
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHhcC
Q 006624 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGK---GC--ALTVYTYTELIKGLGRAG 315 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~--~~~~~~~~~li~~~~~~g 315 (638)
|...|..+.|-..+++.-+. ...-++++|+++|++.... +- ..-...+......+.+..
T Consensus 101 Y~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 88888888877777766542 2344556666666654321 10 011223444556677777
Q ss_pred CHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHCC---CCCCHhHHHHHHHH
Q 006624 316 RVEDAYGLFMNMLKE----GCKPDI-VLINNLINVLGRAGRLEDALKLFNKMEALQ---CKPNVVTYNTVIKS 380 (638)
Q Consensus 316 ~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~ll~~ 380 (638)
++++|-..+.+-... .-.++. ..|...|-.|.-..|+..|.+.++.--+.+ -.-+..+...|+.+
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 887776665543321 011121 234455556666778888888888743322 12234455555544
No 257
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.84 E-value=2 Score=40.83 Aligned_cols=202 Identities=15% Similarity=0.101 Sum_probs=123.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhC--CCC---CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC---CHHH
Q 006624 162 VLSEIVNILGKAKMVNKALSIFYQIKSR--KCK---PTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFP---DTVT 233 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~ 233 (638)
++..+..+..+.|.+++++..--.-... ... .-..+|..+.+++-+.-++.+++.+-..-.......| -...
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 4445556677777777765543211110 001 1234455566666666666676666555443222112 1123
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHH
Q 006624 234 YSALISAFGKLGRDISAIRLFDEMKENGL-----QPTAKIYTTLVSIYFKLGEVEKALGLVQEMKG----KGCALTVYTY 304 (638)
Q Consensus 234 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~~~ 304 (638)
..++..++...+.++++++.|+...+.-. -....++..|...|.+..++++|.-+..+..+ .++..-...|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 44567778888899999999998875321 11345788999999999999998877655543 2332112223
Q ss_pred HH-----HHHHHHhcCCHHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006624 305 TE-----LIKGLGRAGRVEDAYGLFMNMLK----EGCKP-DIVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 305 ~~-----li~~~~~~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 363 (638)
.. +.-++...|+..+|.+..++..+ .|-.+ -......+.+.|...|+.+.|..-|+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 32 34467788988888888887655 33221 12344567788999999999888887753
No 258
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=3.6 Score=38.25 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006624 546 DINSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 546 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
|...-..+...+...|+.++|.+.+-.+..
T Consensus 235 d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 235 DVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444555555666666666655555543
No 259
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.72 E-value=2.1 Score=35.59 Aligned_cols=9 Identities=33% Similarity=0.412 Sum_probs=3.4
Q ss_pred CHHHHHHHH
Q 006624 281 EVEKALGLV 289 (638)
Q Consensus 281 ~~~~A~~~~ 289 (638)
+++.|.+++
T Consensus 111 d~~~a~~~~ 119 (140)
T smart00299 111 NYEKAIEYF 119 (140)
T ss_pred CHHHHHHHH
Confidence 333333333
No 260
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.70 E-value=0.11 Score=32.85 Aligned_cols=28 Identities=7% Similarity=0.044 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 198 YNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 198 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+..+..+|.+.|++++|.++|+++++..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3334444444444444444444444433
No 261
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.67 E-value=1.8 Score=34.62 Aligned_cols=66 Identities=20% Similarity=0.207 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 006624 407 PFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCG 473 (638)
Q Consensus 407 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 473 (638)
...+...++.+...|+-++-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.++.+.|.
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3344556677778888888888888877644 67778888888888888888888888888777654
No 262
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.63 E-value=0.12 Score=32.70 Aligned_cols=40 Identities=3% Similarity=0.075 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 006624 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
.++..+...|.+.|++++|+++|+++.+..+. |...+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence 35566677777777777777777777766433 55555444
No 263
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.61 E-value=0.22 Score=46.18 Aligned_cols=78 Identities=8% Similarity=0.059 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhh-----CCCCCCHHHHHH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKS-----RKCKPTANTYNS 200 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~ 200 (638)
.++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345555555555666666666666555543 44455555666666666666666666555543 345555554444
Q ss_pred HHHH
Q 006624 201 MILM 204 (638)
Q Consensus 201 l~~~ 204 (638)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4333
No 264
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.60 E-value=2.4 Score=35.74 Aligned_cols=125 Identities=14% Similarity=0.149 Sum_probs=69.9
Q ss_pred HHhCCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHH-HHHHH--HHHHHccC
Q 006624 170 LGKAKMVNKALSIFYQIKSRKCKPTAN-TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTV-TYSAL--ISAFGKLG 245 (638)
Q Consensus 170 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~g 245 (638)
+.+.+..++|+.-|..+.+.|...-+. ..........+.|+-..|...|+++-...+. |-.. -...| .-.+...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHHHhccc
Confidence 355667777777777777765542222 2222334456677777777777777665433 3332 11111 22334556
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 246 RDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 246 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 295 (638)
.+++.....+.+...|-+.-...-..|.-+-.+.|++.+|.+.|..+...
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 66666666665554443334444555555666666666666666666553
No 265
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.57 E-value=0.34 Score=44.07 Aligned_cols=104 Identities=18% Similarity=0.259 Sum_probs=61.4
Q ss_pred CCHhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH
Q 006624 510 PDVYTYNALMSGMVRA-----GMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVS 584 (638)
Q Consensus 510 p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 584 (638)
-|..+|-..+..+... +.++-....++.|.+.|+.-|..+|+.|++.+-+.. +.|...
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nv- 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNV- 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHH-
Confidence 4555666666555432 445556666677777777777777777776654321 122221
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC
Q 006624 585 YNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDE 632 (638)
Q Consensus 585 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 632 (638)
+....--|-+ .-+=++.++++|...|+-||..+-..|++++++.|.
T Consensus 128 fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111111111 123467788888888888888888888888877654
No 266
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.51 E-value=0.54 Score=42.80 Aligned_cols=106 Identities=18% Similarity=0.229 Sum_probs=62.4
Q ss_pred CCCHhhHHHHHHHHHcc-----CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 006624 439 PPCPAAYCSLINGYGKA-----KRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVY 513 (638)
Q Consensus 439 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 513 (638)
.-|..+|...+..+... +.++=....++.|.+.|+..|..+|+.|++.+-+-. +.|...
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHH
Confidence 34555666666555432 445555555566666666666666666665543221 112111
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006624 514 TYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGP 563 (638)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 563 (638)
.-...+ -|- ..-+-++.++++|..+|+.||..+-..|+.++.+.+-.
T Consensus 128 fQ~~F~-HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 128 FQKVFL-HYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHh-hCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 111111 111 12245889999999999999999999999999887753
No 267
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.48 E-value=6.6 Score=40.26 Aligned_cols=135 Identities=10% Similarity=0.086 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+...|+.++.---.....+.+...+..++.. .|.-..-|......=.+.|..+.+.++|++-+.. ++.++..|.....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 3445555555444444455666666666653 2333334555555566778888888888887753 4556666666655
Q ss_pred HHH-hcCCHhHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006624 204 MLM-QEGYYEKIHELYNEMCNEGN-CFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 204 ~~~-~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
-++ ..|+.+...+.|+.+....+ ..-....|...|..-...++.....+++++.++.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 444 35677777777877765422 2234456777777777778888888888888774
No 268
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.38 E-value=2.8 Score=35.44 Aligned_cols=136 Identities=15% Similarity=0.213 Sum_probs=93.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHH-
Q 006624 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPS-VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNS- 200 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~- 200 (638)
.+...|..-++ +.+.+..++|+.-|.++.+.|...=+. ..-.........|+...|...|.++-.....|-..--..
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 34556655554 467788889999999888775433222 233445567788999999999999877644444331111
Q ss_pred H--HHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006624 201 M--ILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 201 l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
| .-.++.+|.+++.....+-+...+.. .-...-..|.-+-.+.|++.+|.+.|+.+...
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~-mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNP-MRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCCh-hHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1 23456789999988888888765542 44555677888888999999999999988764
No 269
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.25 E-value=1.5 Score=41.14 Aligned_cols=155 Identities=10% Similarity=0.024 Sum_probs=107.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc---CCCCcHHHHHHHHHHHHhcCCHH
Q 006624 418 CKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEY---CGCSSARVYAVMIKHFGKCGRLS 494 (638)
Q Consensus 418 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~ 494 (638)
-..|+..+|-..++++.+. .|.|..++...-++|...|+.+.-...++++... +.|....+-.....++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 4578888888888888876 4888888888888999999998888888888764 22222333344555666889999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 495 DAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD---INSHNIILNGLAKSGGPKRAMEIFT 571 (638)
Q Consensus 495 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~ 571 (638)
+|.+.-++..+.+ +-|.-.-.++.+.+.-.|++.++.++..+-...=-..+ ..-|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999888887765 44566667777778888999999887665443200001 1112222233456688899999998
Q ss_pred Hhh
Q 006624 572 KMQ 574 (638)
Q Consensus 572 ~m~ 574 (638)
+-+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 744
No 270
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.24 E-value=4.2 Score=37.02 Aligned_cols=71 Identities=21% Similarity=0.253 Sum_probs=38.3
Q ss_pred HccCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006624 242 GKLGRDISAIRLFDEMKENG--LQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLG 312 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 312 (638)
.+.|++++|.+.|+.+..+. -+-...+.-.++-++.+.++++.|+...++....-+......|...+.+++
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 34566666666666665431 111234455556666667777777766666665544333344444444444
No 271
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.16 E-value=4.9 Score=44.59 Aligned_cols=158 Identities=18% Similarity=0.246 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 006624 174 KMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRL 253 (638)
Q Consensus 174 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 253 (638)
+++++|+.-+.++.. ..|.-.++.--+.|.+.+|+.+|..=.+ .-...|.+....+...+.+++|.-.
T Consensus 894 ~ry~~AL~hLs~~~~-------~~~~e~~n~I~kh~Ly~~aL~ly~~~~e-----~~k~i~~~ya~hL~~~~~~~~Aal~ 961 (1265)
T KOG1920|consen 894 KRYEDALSHLSECGE-------TYFPECKNYIKKHGLYDEALALYKPDSE-----KQKVIYEAYADHLREELMSDEAALM 961 (1265)
T ss_pred HHHHHHHHHHHHcCc-------cccHHHHHHHHhcccchhhhheeccCHH-----HHHHHHHHHHHHHHHhccccHHHHH
Confidence 466667666555431 1233333434566777777776532111 1123344445555566777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006624 254 FDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVY--TYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 254 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
|+..-+. .--+.+|..+|+|.+|+.+..++... .+.. +-..|+.-+...++.-+|-++..+....
T Consensus 962 Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd- 1028 (1265)
T KOG1920|consen 962 YERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD- 1028 (1265)
T ss_pred HHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-
Confidence 7654321 23466777888888888888776532 1222 2255677777888888888888777654
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006624 332 CKPDIVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 332 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 363 (638)
. ...+..||+...+++|..+.....
T Consensus 1029 ---~----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1029 ---P----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred ---H----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 1 123445666677788777766543
No 272
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.13 E-value=6.3 Score=39.57 Aligned_cols=60 Identities=18% Similarity=0.165 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 269 YTTLVSIYFKLGEVEKALGLVQEMKGKGCAL-TVYTYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
-..+..++-+.|+.++|++.+++|.+..+.. .......|+.++...+.+.++..++.+-.
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3445556666666666666666665543221 23345556666666666666666666643
No 273
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.77 E-value=6.3 Score=37.59 Aligned_cols=139 Identities=14% Similarity=0.230 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--CC----CHHHHHHHHHHHhhCCCC---CCHHHHHHHHHHHHhcCC--
Q 006624 142 GVMWKSIQDMVRSTCVMGPSVLSEIVNILGK--AK----MVNKALSIFYQIKSRKCK---PTANTYNSMILMLMQEGY-- 210 (638)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~-- 210 (638)
++...+++.|.+.|...+..++.+..-.... .. ...+|..+|+.|++..+. ++-..+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4666677888888888777666654333333 22 456799999999887432 223333333322 3333
Q ss_pred --HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006624 211 --YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGR---DISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEV 282 (638)
Q Consensus 211 --~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 282 (638)
.+.+...|+.+.+.|..+-|...+.+-+-+++.... +..+.++++.+.+.|+++....|..+.-...-.+..
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~ 233 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPE 233 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCch
Confidence 356778888888877654555444444444443322 457888999999999998888877666555444443
No 274
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.77 E-value=8.3 Score=38.75 Aligned_cols=60 Identities=13% Similarity=0.078 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 411 SILIDGFCKTNRVEKAHLLLEEMEEKGFP-PCPAAYCSLINGYGKAKRYEAANELFLELKE 470 (638)
Q Consensus 411 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (638)
..+..++-+.|+.++|++.++++.+..-. ........|+.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 44556666777777777777777654311 2233556677777777777777777766543
No 275
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.20 E-value=2.1 Score=32.49 Aligned_cols=62 Identities=16% Similarity=0.252 Sum_probs=43.8
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 006624 565 RAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 565 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
+..+-++.+....+.|++.+..+.+++|.+.+++.-|.++++-.+.+ +.+...+|..+++-+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHHH
Confidence 56667777777788899999999999999999999999999988764 233333787777644
No 276
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.14 E-value=1.7 Score=37.77 Aligned_cols=96 Identities=15% Similarity=0.161 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHH--HH
Q 006624 479 VYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPD--VYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVP-DINSHN--II 553 (638)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~--~l 553 (638)
.+..+...|++.|+.++|++.|.++.+....+. ...+-.++......+++..+.....++...--.+ |...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 455666667777777777777777666543333 2334556666666777777766666555421111 111111 11
Q ss_pred HH--HHHhcCCHHHHHHHHHHhh
Q 006624 554 LN--GLAKSGGPKRAMEIFTKMQ 574 (638)
Q Consensus 554 ~~--~~~~~g~~~~A~~~~~~m~ 574 (638)
.. .+...|++.+|-+.|-...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 11 2245567777777766654
No 277
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.12 E-value=6.1 Score=35.30 Aligned_cols=24 Identities=4% Similarity=0.263 Sum_probs=13.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC
Q 006624 593 SRAGMFEEAARLMKDMNAKGFEYD 616 (638)
Q Consensus 593 ~~~g~~~~A~~~~~~m~~~~~~p~ 616 (638)
...|++.+|+++|++.....+..+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccch
Confidence 345566666666666655443333
No 278
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.91 E-value=1.3 Score=41.14 Aligned_cols=79 Identities=20% Similarity=0.322 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-----CCCCCCHHHH
Q 006624 195 ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE-----NGLQPTAKIY 269 (638)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~ 269 (638)
..++..++..+...|+++.+.+.++++....+ -+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp--~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP--YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 34455666777777777777777777777665 5777777777777777777777777776654 4666666555
Q ss_pred HHHHHH
Q 006624 270 TTLVSI 275 (638)
Q Consensus 270 ~~li~~ 275 (638)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 444433
No 279
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.83 E-value=7.2 Score=35.35 Aligned_cols=119 Identities=24% Similarity=0.139 Sum_probs=54.0
Q ss_pred CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006624 209 GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN-GLQPTAKIYTTLVSIYFKLGEVEKALG 287 (638)
Q Consensus 209 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~ 287 (638)
+....+...+...............+......+...+++..+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443321002344555555555555555555555555431 122334444455555555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHH
Q 006624 288 LVQEMKGKGCALTVYTYTELIK-GLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 288 ~~~~m~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~ 328 (638)
.+.........+ ......... .+...|+++.|...+.+..
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 157 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKAL 157 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555443322 111111111 4445555555555555553
No 280
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.70 E-value=17 Score=39.21 Aligned_cols=477 Identities=13% Similarity=0.082 Sum_probs=212.8
Q ss_pred HHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhCCCHH
Q 006624 106 NVKIQFFKWAGRRRNFEH--NSTTYMALIRCLD-ETRMIGVMWKSIQDMVRSTCVMGP-----SVLSEIVNILGKAKMVN 177 (638)
Q Consensus 106 ~~a~~~f~~~~~~~~~~~--~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~ 177 (638)
..|++.+.-+.++...+| ...++.-++++|. ...++++|...+++.......++. ..-..++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 456666666655444444 2356666777766 677888888888766443212221 12234455555555444
Q ss_pred HHHHHHHHHhhC--C--CCCCHHHHHHH-HHHHHhcCCHhHHHHHHHHHHhCCC--CCCCHHHHHHHHHHHH--ccCChH
Q 006624 178 KALSIFYQIKSR--K--CKPTANTYNSM-ILMLMQEGYYEKIHELYNEMCNEGN--CFPDTVTYSALISAFG--KLGRDI 248 (638)
Q Consensus 178 ~A~~~~~~~~~~--~--~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~--~~g~~~ 248 (638)
|....++..+. + ..+-...+..+ +..+...+++..|.+.++.+..... ..|....+..++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 77777765543 1 11112222333 2222333677777777777654321 1133444444444443 345556
Q ss_pred HHHHHHHHHHHCCC---------CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhC---CCCCCHHHHHH-----HHH
Q 006624 249 SAIRLFDEMKENGL---------QPTAKIYTTLVSIYF--KLGEVEKALGLVQEMKGK---GCALTVYTYTE-----LIK 309 (638)
Q Consensus 249 ~A~~~~~~m~~~g~---------~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~-----li~ 309 (638)
++.+.++++..... .|...+|..+++.++ ..|+++.+...++++.+. .-... .|.. .+.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~--~w~~~~~d~~i~ 274 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSP--SWPSWDEDGSIP 274 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCc--cCCCcCCCeeEE
Confidence 66666665532211 234455555555443 456655655555544321 00000 0000 000
Q ss_pred HHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHH--HHHccCCHHHHHHHHHHHHHC--------CCCCCHhHHHHH
Q 006624 310 GLGRAGRVE--DAYGLFMNMLKEGCKPDIVLINNLIN--VLGRAGRLEDALKLFNKMEAL--------QCKPNVVTYNTV 377 (638)
Q Consensus 310 ~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~--------~~~p~~~~~~~l 377 (638)
.-...+... ...-+|.-+-+ .+.....-++. ..+..+..+.|.+++++..+. ...+. .+...+
T Consensus 275 l~~~~~~~~~~~~~~~f~wl~~----~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~-~sl~~~ 349 (608)
T PF10345_consen 275 LNIGEGSSNSGGTPLVFSWLPK----EELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPS-ESLSEA 349 (608)
T ss_pred eecccccccCCCceeEEeecCH----HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCC-cCHHHH
Confidence 000000000 00001111100 01122222222 233344444666666655331 00000 011000
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CC------CHhhHHHHH
Q 006624 378 IKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGF--PP------CPAAYCSLI 449 (638)
Q Consensus 378 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~------~~~~~~~li 449 (638)
... ..++..+.. ...-..+-..+-.+++.+|...++++.+..- ++ .+..+...+
T Consensus 350 ~~~-----------~~~~~~l~~-------~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~g 411 (608)
T PF10345_consen 350 SER-----------IQWLRYLQC-------YLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLG 411 (608)
T ss_pred HHh-----------HHHHHHHHH-------HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHH
Confidence 000 111111110 0111122234457889899999998875421 11 123333344
Q ss_pred HHHHccCCHHHHHHHHH--------HHHHcCCCCcHHHHHHHHH----HHHhcCCHHH--HHHHHHHHHhC-CCCCC--H
Q 006624 450 NGYGKAKRYEAANELFL--------ELKEYCGCSSARVYAVMIK----HFGKCGRLSD--AVDLFNEMKKL-RCKPD--V 512 (638)
Q Consensus 450 ~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~li~----~~~~~g~~~~--A~~~~~~m~~~-~~~p~--~ 512 (638)
-.+...|+.+.|...|. .....+...+..++..+=. -+......++ +..+++.+... .-.|+ .
T Consensus 412 l~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~ 491 (608)
T PF10345_consen 412 LYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYN 491 (608)
T ss_pred HHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHH
Confidence 44556799999999997 4444444455554443211 1222223333 67777766542 11222 3
Q ss_pred hhHHHH-HHHHHHcC--CHHHHHHHHHHHHHCC---CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCC--
Q 006624 513 YTYNAL-MSGMVRAG--MIDDAYSLLRRMEEDG---CVPD---INSHNIILNGLAKSGGPKRAMEIFTKMQHS-EIKP-- 580 (638)
Q Consensus 513 ~~~~~l-~~~~~~~g--~~~~A~~~~~~~~~~~---~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p-- 580 (638)
.++..+ +.++.... ...++...+.+..+.- ...+ ..+++.+...+. .|+..+..+........ .-.|
T Consensus 492 ~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~ 570 (608)
T PF10345_consen 492 RTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDY 570 (608)
T ss_pred HHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhh
Confidence 333333 33332221 2234444443333211 1111 223343444444 67877766665554321 1112
Q ss_pred CHHHHHH-----HHHHHHhcCCHHHHHHHHHHHH
Q 006624 581 DAVSYNT-----ILGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 581 ~~~~~~~-----l~~~~~~~g~~~~A~~~~~~m~ 609 (638)
....|.. +...+...|+.++|.....+..
T Consensus 571 ~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 571 SDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred hhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 3345533 3344777899999998887765
No 281
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.68 E-value=12 Score=37.55 Aligned_cols=408 Identities=11% Similarity=0.090 Sum_probs=215.5
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Q 006624 108 KIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK-MVNKALSIFYQI 186 (638)
Q Consensus 108 a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~ 186 (638)
-..+|+-+. ..|++|+..|...+.-+-+.+.+.++-.+|.+|+... +.++..|..-......-+ +++.|..+|..-
T Consensus 90 Iv~lyr~at--~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 90 IVFLYRRAT--NRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHH--HhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 344455443 3457799999999999988898999999999999863 556666665555544444 599999999988
Q ss_pred hhCCCCCCHHHHHHHHHHHHh---------------cCCH----hHHHHHHHHHH-----hCCCCCCCHH---H-H----
Q 006624 187 KSRKCKPTANTYNSMILMLMQ---------------EGYY----EKIHELYNEMC-----NEGNCFPDTV---T-Y---- 234 (638)
Q Consensus 187 ~~~~~~~~~~~~~~l~~~~~~---------------~g~~----~~A~~~~~~~~-----~~~~~~~~~~---~-~---- 234 (638)
...++. ++..|-...+.-.. .++. +.....+.... ..+.. +... + -
T Consensus 167 LR~npd-sp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~-k~~e~~~~~~~d~~ 244 (568)
T KOG2396|consen 167 LRFNPD-SPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAV-KSVELSVAEKFDFL 244 (568)
T ss_pred hhcCCC-ChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcch-hhcchHHHHHHHHH
Confidence 877433 44444433322110 1111 00111110000 00000 0000 0 0
Q ss_pred ----HHHHHHHHccC-------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006624 235 ----SALISAFGKLG-------RDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYT 303 (638)
Q Consensus 235 ----~~l~~~~~~~g-------~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 303 (638)
...++. .+.+ ..+.|.+.++-.... +...+...-....-.-+-+....+|++..+. .|+...
T Consensus 245 kel~k~i~d~-~~~~~~~np~~~~~laqr~l~i~~~t----dl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm 317 (568)
T KOG2396|consen 245 KELQKNIIDD-LQSKAPDNPLLWDDLAQRELEILSQT----DLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESM 317 (568)
T ss_pred HHHHHHHHHH-HhccCCCCCccHHHHHHHHHHHHHHh----hccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHH
Confidence 001111 1111 124455555544432 1112222222222222233344666666543 335555
Q ss_pred HHHHHHHHHhc------CCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHccCCH-HHHHHHHHHHHHCCCCCCHhHH
Q 006624 304 YTELIKGLGRA------GRVEDAYGLFMNMLKEG-CKP-DIVLINNLINVLGRAGRL-EDALKLFNKMEALQCKPNVVTY 374 (638)
Q Consensus 304 ~~~li~~~~~~------g~~~~A~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~ 374 (638)
|+..|..|... ..+..-..+|+.....+ ..+ ....|..+.-.++..+.. +.|..+..+. ..-+...|
T Consensus 318 ~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~----f~~s~k~~ 393 (568)
T KOG2396|consen 318 WECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTEL----FRDSGKMW 393 (568)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHH----hcchHHHH
Confidence 55555554432 23444555666555532 222 234555555555555443 3334443333 23455566
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHH--HHHHHHHHHhCCCCCCHh-hHHHHH
Q 006624 375 NTVIKSLFESKA-PASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNR-VEK--AHLLLEEMEEKGFPPCPA-AYCSLI 449 (638)
Q Consensus 375 ~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~--A~~~~~~~~~~~~~~~~~-~~~~li 449 (638)
..-+........ ..-....+|......-..+-...|+... .++ ... -..++......+ .++.. .-+.++
T Consensus 394 ~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~-~~~~~tl~s~~l 467 (568)
T KOG2396|consen 394 QLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVI-GADSVTLKSKYL 467 (568)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhc-CCceeehhHHHH
Confidence 555555543322 2222233344444433333344444433 122 111 122333444444 34444 445677
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHc
Q 006624 450 NGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFG---KCGRLSDAVDLFNEMKKL-RCKPDVYTYNALMSGMVRA 525 (638)
Q Consensus 450 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~ 525 (638)
+.+.+.|-.++|...+..+... .+++...|..+|..-. .+| +..+..+++.|... | .|+..|...+.--...
T Consensus 468 ~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~ 543 (568)
T KOG2396|consen 468 DWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSDLWMDYMKEELPL 543 (568)
T ss_pred HHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChHHHHHHHHhhccC
Confidence 8888888999999999988886 6778888888886532 334 77888888888654 5 6777787777666688
Q ss_pred CCHHHHHHHHHHHHHC
Q 006624 526 GMIDDAYSLLRRMEED 541 (638)
Q Consensus 526 g~~~~A~~~~~~~~~~ 541 (638)
|..+.+-.++.++.+.
T Consensus 544 g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 544 GRPENCGQIYWRAMKT 559 (568)
T ss_pred CCcccccHHHHHHHHh
Confidence 9888888888777653
No 282
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.68 E-value=6.7 Score=34.59 Aligned_cols=69 Identities=13% Similarity=0.042 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006624 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
|.-+.+||-+.--+...|+++.|.+.|+...+.++.-+ .+...-.-++.-.|++.-|.+-|.+.-+.++
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~ 164 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRYKLAQDDLLAFYQDDP 164 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-HHHhccceeeeecCchHhhHHHHHHHHhcCC
Confidence 34467888888888889999999999999888755423 3333333444557889999888888877664
No 283
>PRK09687 putative lyase; Provisional
Probab=92.61 E-value=9.5 Score=36.16 Aligned_cols=203 Identities=13% Similarity=0.053 Sum_probs=130.6
Q ss_pred CHHHHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCH-----HHHHHHHHHHHHcCCCCc
Q 006624 406 SPFTYSILIDGFCKTNRV----EKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRY-----EAANELFLELKEYCGCSS 476 (638)
Q Consensus 406 ~~~~~~~l~~~~~~~~~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-----~~A~~~~~~~~~~~~~~~ 476 (638)
|...-...+.++.+.|+. +++...+..+... .++..+....+.++...+.. ..+...+..... .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 444445556666666653 4567777766443 45666666666666655421 223333333332 246
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006624 477 ARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAG-MIDDAYSLLRRMEEDGCVPDINSHNIILN 555 (638)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 555 (638)
..+-...+.++.+.++ ++|...+-.+.+. +|...-...+.++.+.+ +...+...+..+.. .+|..+-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence 6677777888888877 5677777666653 45555555555665543 24567777777775 357777778888
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 006624 556 GLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGK 629 (638)
Q Consensus 556 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 629 (638)
++.+.|+. .|...+-+..+.+ + .....+.++...|+. +|...+.++.+. .||..+-...+++|.+
T Consensus 215 aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 215 GLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 99998884 6777766666543 2 234677889999995 788888888853 5688888888888764
No 284
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.57 E-value=2.1 Score=37.29 Aligned_cols=97 Identities=18% Similarity=0.118 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHH--H
Q 006624 513 YTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD--INSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKP-DAVSYN--T 587 (638)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~--~ 587 (638)
..+..+...|++.|+.+.|.+.|.++.+....+. ...+-.++......|++..+.....+....--.+ |...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4577889999999999999999999998754444 4456778888899999999999998887531111 221111 1
Q ss_pred HHH--HHHhcCCHHHHHHHHHHHH
Q 006624 588 ILG--CLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 588 l~~--~~~~~g~~~~A~~~~~~m~ 609 (638)
... .+...|++.+|.+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 111 2356789999988887665
No 285
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.54 E-value=1.1 Score=33.62 Aligned_cols=63 Identities=16% Similarity=0.234 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 006624 564 KRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 564 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
=++.+-++.+....+.|++.+..+.+++|.+.+++.-|.++++-.+.+ +..+..+|..+++-+
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqei 86 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQEI 86 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHHH
Confidence 356666666666677888888888888888888888888888877643 222445676666543
No 286
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.51 E-value=16 Score=38.61 Aligned_cols=100 Identities=14% Similarity=0.080 Sum_probs=63.5
Q ss_pred CCCCCCHHHHHH-----HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh--HHHHHHHHHHHHCC
Q 006624 189 RKCKPTANTYNS-----MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD--ISAIRLFDEMKENG 261 (638)
Q Consensus 189 ~~~~~~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~m~~~g 261 (638)
.|+..+..-|.. +++-+...+.+..|+++-..+..... .....|..+...+.+..+. +++++.+++=....
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~--~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPES--QGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccc--cccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 356666665554 45667778889999998887754221 2256777777777766332 23333333322221
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 262 LQPTAKIYTTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (638)
. -....|..++.-...+|+.+-|..+++.
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 2 3456788888888889999999888754
No 287
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.36 E-value=13 Score=37.32 Aligned_cols=182 Identities=9% Similarity=0.056 Sum_probs=124.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 006624 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
+.|-....+++..++.+..+.-...+..+|+. ...+-..+..++..|... ..+.-..+++++.+..+. |++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~--~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLE--YGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 34556777889999999999999999999988 456778888999999888 567788889988887554 55555556
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCC-CCH---HHHHHHHHHHHccCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 006624 202 ILMLMQEGYYEKIHELYNEMCNEGNCF-PDT---VTYSALISAFGKLGRDISAIRLFDEMKE-NGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~li~~~ 276 (638)
...|-+ ++.+.+...|.++...-... .+. ..|..+.... -.+.+.-+++...+.. .|...-...+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 555544 88888888888887654310 111 2344333321 2455666666666553 24344455666666778
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006624 277 FKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGL 311 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 311 (638)
....++.+|++++..+.+.+-. |..+-..++.-+
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 8888999999999988877543 555555555443
No 288
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.24 E-value=18 Score=38.39 Aligned_cols=147 Identities=18% Similarity=0.182 Sum_probs=83.3
Q ss_pred HhHHHHHHHHHHhCCCCCCCHHHHHHHH--HH-HHccCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC
Q 006624 211 YEKIHELYNEMCNEGNCFPDTVTYSALI--SA-FGKLGRDISAIRLFDEMKE-------NGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~--~~-~~~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g 280 (638)
...|.++++...+.+. ........++ .+ +....+.+.|+.+|+.+.+ .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~--~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH--SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhHHHHHHHHHHhhcc--hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Confidence 4567777777777654 2222222222 22 3455677888888877766 44 3345566666666632
Q ss_pred -----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----ccC
Q 006624 281 -----EVEKALGLVQEMKGKGCALTVYTYTELIKGLGR-AGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLG----RAG 350 (638)
Q Consensus 281 -----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g 350 (638)
+.+.|..++.+.-+.|.+ +...+-..+..... ..+...|.++|....+.|.. ..+-.+..+|. -..
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVER 378 (552)
T ss_pred CCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCC
Confidence 567788888777777643 44443333322222 24567788888887777653 22222222222 234
Q ss_pred CHHHHHHHHHHHHHCC
Q 006624 351 RLEDALKLFNKMEALQ 366 (638)
Q Consensus 351 ~~~~A~~~~~~~~~~~ 366 (638)
+...|..++.+..+.|
T Consensus 379 ~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG 394 (552)
T ss_pred CHHHHHHHHHHHHHcc
Confidence 5677777777776655
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.22 E-value=0.35 Score=28.93 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMC 222 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 222 (638)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666666666666666666643
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.99 E-value=0.39 Score=28.75 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 584 SYNTILGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 609 (638)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888854
No 291
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.90 E-value=21 Score=38.49 Aligned_cols=165 Identities=14% Similarity=0.144 Sum_probs=71.8
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHH
Q 006624 268 IYTTLVSIYF-KLGEVEKALGLVQEMKGKGCALTVY-----TYTELIKGLGRAGRVEDAYGLFMNMLKE----GCKPDIV 337 (638)
Q Consensus 268 ~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~ 337 (638)
++-.++..+. ...+++.|+..+++.....-.++.. ....++..+.+.+... |...+++.++. +..+-..
T Consensus 61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~ 139 (608)
T PF10345_consen 61 VRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYY 139 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHH
Confidence 4444555544 4555666666666543322111111 1223345555555444 66666655542 1112222
Q ss_pred HHHHH-HHHHHccCCHHHHHHHHHHHHHCC---CCCCHhHHHHHHHHHHhc--CChHHHHHHHHHHHHhC---------C
Q 006624 338 LINNL-INVLGRAGRLEDALKLFNKMEALQ---CKPNVVTYNTVIKSLFES--KAPASEASAWFEKMKAN---------G 402 (638)
Q Consensus 338 ~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~---------~ 402 (638)
.|.-+ +..+...++...|.+.++.+.... ..|....+-.++.+.... +...+. .+..+.+... .
T Consensus 140 ~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~-~~~l~~~~~~~~~~q~~~~~ 218 (608)
T PF10345_consen 140 AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV-LELLQRAIAQARSLQLDPSV 218 (608)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH-HHHHHHHHHHHhhcccCCCC
Confidence 33333 222222356666666666654332 223333333333333322 222222 2222332111 1
Q ss_pred CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 006624 403 VLPSPFTYSILIDGFC--KTNRVEKAHLLLEEME 434 (638)
Q Consensus 403 ~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~ 434 (638)
..|-...|..+++.++ ..|+++.+...++++.
T Consensus 219 ~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 219 HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1234455666655443 5666667666666553
No 292
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.39 E-value=24 Score=38.28 Aligned_cols=226 Identities=16% Similarity=0.105 Sum_probs=123.3
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHH-HHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 006624 242 GKLGRDISAIRLFDEMKENGLQPTAK-------IYTTLVS-IYFKLGEVEKALGLVQEMKGK----GCALTVYTYTELIK 309 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m~~~g~~~~~~-------~~~~li~-~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~li~ 309 (638)
....++++|..+++++...-..|+.. .++.|-. .....|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 35678999999988876542222221 2333322 234578899999888877654 22345667777788
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-----HHHHHccCCHH--HHHHHHHHHHHC--CCC----CCHhHHHH
Q 006624 310 GLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNL-----INVLGRAGRLE--DALKLFNKMEAL--QCK----PNVVTYNT 376 (638)
Q Consensus 310 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-----~~~~~~~g~~~--~A~~~~~~~~~~--~~~----p~~~~~~~ 376 (638)
+..-.|++++|..+..+..+..-.-++..+... ...+...|+.. +....|...... .-+ +-......
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888899999999888777664333344333322 23455667333 333333333221 111 22334445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CHhhHHHHHH
Q 006624 377 VIKSLFESKAPASEASAWFEKMKANGVLPSPFTY--SILIDGFCKTNRVEKAHLLLEEMEEKGFPP----CPAAYCSLIN 450 (638)
Q Consensus 377 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~li~ 450 (638)
++.++.+......++...++.-......|-...+ ..|+.+....|+.++|...+.++......+ +..+-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 5555555322222223322222222222222222 367788889999999999998887543222 2222222222
Q ss_pred --HHHccCCHHHHHHHHHH
Q 006624 451 --GYGKAKRYEAANELFLE 467 (638)
Q Consensus 451 --~~~~~g~~~~A~~~~~~ 467 (638)
.....|+.+.+.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 23346777777766655
No 293
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.34 E-value=8.4 Score=32.87 Aligned_cols=97 Identities=18% Similarity=0.342 Sum_probs=44.4
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 006624 185 QIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP 264 (638)
Q Consensus 185 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 264 (638)
.+.+.++.|+...|..+++.+.+.|++.....++.- +.. +|.......+-.+. +....+.++=-+|.++
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~----~Vi-~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR---- 87 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY----HVI-PDSKPLACQLLSLG--NQYPPAYQLGLDMLKR---- 87 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh----ccc-CCcHHHHHHHHHhH--ccChHHHHHHHHHHHH----
Confidence 334445556666666666666666665544333322 222 33333333222221 1223333333333332
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 265 TAKIYTTLVSIYFKLGEVEKALGLVQEM 292 (638)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 292 (638)
=...+..+++.+...|++-+|+++.+..
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0113344555666666666666666554
No 294
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.14 E-value=0.27 Score=28.95 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=10.7
Q ss_pred CHHHHHHHHHHHHhcCCHhHH
Q 006624 194 TANTYNSMILMLMQEGYYEKI 214 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A 214 (638)
+..+|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444555555555555555544
No 295
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.88 E-value=10 Score=33.00 Aligned_cols=91 Identities=11% Similarity=0.002 Sum_probs=43.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc
Q 006624 167 VNILGKAKMVNKALSIFYQIKSRKCK--PTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL 244 (638)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (638)
...+..+|++++|..-++.....-.. ....+-..|.+...+.|++++|+..++.....+ -.......-.+.+...
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~---w~~~~~elrGDill~k 172 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES---WAAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc---HHHHHHHHhhhHHHHc
Confidence 34455566666666666655432100 011112223455555666666666655544322 1222233334555556
Q ss_pred CChHHHHHHHHHHHHC
Q 006624 245 GRDISAIRLFDEMKEN 260 (638)
Q Consensus 245 g~~~~A~~~~~~m~~~ 260 (638)
|+-++|+.-|++..+.
T Consensus 173 g~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 173 GDKQEARAAYEKALES 188 (207)
T ss_pred CchHHHHHHHHHHHHc
Confidence 6666666666655554
No 296
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.75 E-value=33 Score=38.63 Aligned_cols=81 Identities=12% Similarity=0.109 Sum_probs=49.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 006624 413 LIDGFCKTNRVEKAHLLLEEMEEKGFPPCPA--AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKC 490 (638)
Q Consensus 413 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 490 (638)
.+.+|...|+|.+|+.+..++... .+.. +-..|+.-+...++.-+|-++..+.... ....+..||+.
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka 1039 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKA 1039 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhH
Confidence 355666667777776666655421 1221 1245666777778877777777766552 33445566777
Q ss_pred CCHHHHHHHHHHHH
Q 006624 491 GRLSDAVDLFNEMK 504 (638)
Q Consensus 491 g~~~~A~~~~~~m~ 504 (638)
..+++|+++-....
T Consensus 1040 ~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1040 KEWEEALRVASKAK 1053 (1265)
T ss_pred hHHHHHHHHHHhcc
Confidence 77788777665543
No 297
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.48 E-value=31 Score=38.12 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006624 127 TYMALIRCLDETRMIGVMWKSIQDMVRS 154 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (638)
-|..|+..|...|+.++|.++|.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 4778888888899999999888888763
No 298
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.37 E-value=8 Score=39.65 Aligned_cols=134 Identities=17% Similarity=0.192 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006624 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
....+.++..+.++|..++|+++ .+|..- -.....+.|+++.|.++..+. .+..-|..|..
T Consensus 614 k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~-------~s~~Kw~~Lg~ 674 (794)
T KOG0276|consen 614 KEIRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEA-------NSEVKWRQLGD 674 (794)
T ss_pred hhhhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhh-------cchHHHHHHHH
Confidence 34566777778888887777765 222221 233445678888887776654 45666888888
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006624 240 AFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVED 319 (638)
Q Consensus 240 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 319 (638)
+..+.|++..|.+.|.+... |..|+-.+...|+-+....+-....+.|.. | ...-+|...|++++
T Consensus 675 ~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-----~AF~~~~l~g~~~~ 739 (794)
T KOG0276|consen 675 AALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-----LAFLAYFLSGDYEE 739 (794)
T ss_pred HHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c-----hHHHHHHHcCCHHH
Confidence 88888888888888876654 345666667777776666666666555532 2 22234566788888
Q ss_pred HHHHHHHH
Q 006624 320 AYGLFMNM 327 (638)
Q Consensus 320 A~~~~~~~ 327 (638)
+.+++..-
T Consensus 740 C~~lLi~t 747 (794)
T KOG0276|consen 740 CLELLIST 747 (794)
T ss_pred HHHHHHhc
Confidence 77776543
No 299
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.19 E-value=21 Score=35.58 Aligned_cols=122 Identities=9% Similarity=-0.019 Sum_probs=68.3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 006624 136 DETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIH 215 (638)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 215 (638)
...|+...|-+-+.+.++. .+-++.........+...|.++.+...+...... +.....+...+++...+.|++++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRN-QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 3456665555544444443 1222222222334456667777777776555433 2224556667777777777777777
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006624 216 ELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
..-+.|+.... .+...........-..|-++++.-.++++...+
T Consensus 378 s~a~~~l~~ei--e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEI--EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhcccc--CChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 77777776554 344433333334445566777777777766543
No 300
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.74 E-value=32 Score=36.97 Aligned_cols=92 Identities=20% Similarity=0.252 Sum_probs=45.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCC-----------HHHHHHHHHHhhhCC-----CCC-C
Q 006624 520 SGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILN-GLAKSGG-----------PKRAMEIFTKMQHSE-----IKP-D 581 (638)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~-----------~~~A~~~~~~m~~~~-----~~p-~ 581 (638)
.-+...|++++|+.+|+-+.+. ..-....|.++. ....... ...|..+.+.....+ +.+ +
T Consensus 422 ~~~e~~g~~~dAi~Ly~La~~~--d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~ 499 (613)
T PF04097_consen 422 REAEERGRFEDAILLYHLAEEY--DKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRKN 499 (613)
T ss_dssp HHHHHCT-HHHHHHHHHHTT-H--HHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHH
T ss_pred HHHHHCCCHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHHH
Confidence 4456778888888888766531 001122232222 2222222 344555555554321 111 2
Q ss_pred HHHHHHHHH-----HHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006624 582 AVSYNTILG-----CLSRAGMFEEAARLMKDMNAKGFEYD 616 (638)
Q Consensus 582 ~~~~~~l~~-----~~~~~g~~~~A~~~~~~m~~~~~~p~ 616 (638)
..|+..|++ .+.+.|++++|++.++++ ++.|.
T Consensus 500 ~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L---~liP~ 536 (613)
T PF04097_consen 500 RETFQLLLDLAEFFDLYHAGQYEQALDIIEKL---DLIPL 536 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT---T-S-S
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCC
Confidence 345555543 347899999999888887 56664
No 301
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.34 E-value=12 Score=31.52 Aligned_cols=16 Identities=50% Similarity=0.632 Sum_probs=6.8
Q ss_pred HcCCHHHHHHHHHHHH
Q 006624 524 RAGMIDDAYSLLRRME 539 (638)
Q Consensus 524 ~~g~~~~A~~~~~~~~ 539 (638)
..|++.+|..+|+++.
T Consensus 56 ~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 56 VRGDWDDALRLLRELE 71 (160)
T ss_pred HhCCHHHHHHHHHHHh
Confidence 3444444444444433
No 302
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.15 E-value=15 Score=32.47 Aligned_cols=175 Identities=15% Similarity=0.075 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 006624 177 NKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDE 256 (638)
Q Consensus 177 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 256 (638)
+-|.-=|.+.....+. -+..||.+.--+...|+++.|.+.|+...+.++. ...+...-.-++.--|++.-|.+-|-.
T Consensus 82 ~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~--y~Ya~lNRgi~~YY~gR~~LAq~d~~~ 158 (297)
T COG4785 82 ALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT--YNYAHLNRGIALYYGGRYKLAQDDLLA 158 (297)
T ss_pred HHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc--chHHHhccceeeeecCchHhhHHHHHH
Confidence 3333334444443222 4577999999999999999999999999987652 222222222234456899999888877
Q ss_pred HHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006624 257 MKENGL-QPTAKIYTTLVSIYFKLGEVEKALGLV-QEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKP 334 (638)
Q Consensus 257 m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 334 (638)
..+... .|-...|-.++. ..-++.+|..-+ +...+. |...|...|-.+. .|++.+ ..+++++... ...
T Consensus 159 fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~y-LgkiS~-e~l~~~~~a~-a~~ 228 (297)
T COG4785 159 FYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFY-LGKISE-ETLMERLKAD-ATD 228 (297)
T ss_pred HHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHH-HhhccH-HHHHHHHHhh-ccc
Confidence 766531 122223333332 344566665444 334333 4333433332221 122211 1233333332 111
Q ss_pred C-------HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 335 D-------IVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 335 ~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 364 (638)
+ +.||--+...+...|+.++|..+|+-...
T Consensus 229 n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 229 NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 1 35778888899999999999999998866
No 303
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.00 E-value=1.1 Score=26.08 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.+|..+...|...|++++|++.|++.++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 356666666666777777777776666644
No 304
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.90 E-value=5.3 Score=34.72 Aligned_cols=93 Identities=13% Similarity=0.010 Sum_probs=62.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 006624 132 IRCLDETRMIGVMWKSIQDMVRSTCVMGP-----SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLM 206 (638)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (638)
.+-+.++|++.+|..-|.+.+.. |++.+ ..|..-..++.+.+.++.|+.-..+.++.++. ...+.-.-..+|-
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHH
Confidence 44567788888888888888775 34332 23444556677888888888888777776433 2333334456677
Q ss_pred hcCCHhHHHHHHHHHHhCCC
Q 006624 207 QEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 207 ~~g~~~~A~~~~~~~~~~~~ 226 (638)
+...+++|++-|.++....+
T Consensus 180 k~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDP 199 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCc
Confidence 77788888888888877654
No 305
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.87 E-value=5.7 Score=30.24 Aligned_cols=60 Identities=13% Similarity=0.289 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 143 VMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+..+-+..+...+..|++.+..+.++++.+-+++..|.++|+-++.+ +.+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 66667777777788889999999999999999999999999888765 2222225665553
No 306
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.86 E-value=14 Score=31.58 Aligned_cols=101 Identities=15% Similarity=0.247 Sum_probs=58.4
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 006624 392 SAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEY 471 (638)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 471 (638)
.++.+.+...+++|+...+..+++.+.+.|++..... +...++-+|.......+-.+. +....+.++--+|.+.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 5566777778888888888888888888888665444 344444444444433332222 1223333333333332
Q ss_pred CCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 472 CGCSSAR-VYAVMIKHFGKCGRLSDAVDLFNEM 503 (638)
Q Consensus 472 ~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m 503 (638)
.. .+..+++.+...|++-+|+++.+..
T Consensus 88 -----L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 -----LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred -----hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 11 3455666677777777777777664
No 307
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.83 E-value=13 Score=31.30 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=8.9
Q ss_pred HHhcCCHhHHHHHHHHHHh
Q 006624 205 LMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~ 223 (638)
+++.|++.+|+.+|+++..
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3444444455444444433
No 308
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.52 E-value=0.69 Score=27.22 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=12.1
Q ss_pred CCHHHHHHHHHHHHccCChHHHH
Q 006624 229 PDTVTYSALISAFGKLGRDISAI 251 (638)
Q Consensus 229 ~~~~~~~~l~~~~~~~g~~~~A~ 251 (638)
.+...|+.+...+...|++++|+
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555543
No 309
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.43 E-value=4 Score=30.69 Aligned_cols=61 Identities=15% Similarity=0.273 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 142 GVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
-++.+-+..+...+..|++.+..+.++++.+-+++..|.++|+-++.+ +..+...|..++.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 366777777888888999999999999999999999999999988754 2224456665543
No 310
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.83 E-value=23 Score=32.95 Aligned_cols=58 Identities=16% Similarity=0.151 Sum_probs=35.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 234 YSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEM 292 (638)
Q Consensus 234 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 292 (638)
++...+.|..+|.+.+|.++.+...... +.+...+-.|+..+...|+--.+.+-++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3444556666677777777666666543 345666666667777777655555555544
No 311
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.60 E-value=18 Score=31.50 Aligned_cols=87 Identities=11% Similarity=0.102 Sum_probs=40.0
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHH-----HHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006624 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYS-----ALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYF 277 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 277 (638)
..+...|++++|...++..+.. |....+. .|.+.....|.+|+|+..++...+.+. .......-.+.+.
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 4455666666666666665542 2222222 233344455555555555544443221 1112222334445
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 006624 278 KLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 278 ~~g~~~~A~~~~~~m~~~ 295 (638)
..|+-++|..-|++.++.
T Consensus 171 ~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 171 AKGDKQEARAAYEKALES 188 (207)
T ss_pred HcCchHHHHHHHHHHHHc
Confidence 555555555555554444
No 312
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.51 E-value=31 Score=34.02 Aligned_cols=66 Identities=20% Similarity=0.181 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006624 264 PTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCAL---TVYTYTELIKGLGRAGRVEDAYGLFMNMLK 329 (638)
Q Consensus 264 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 329 (638)
....+|..++..+.+.|.++.|...+..+...+... +......-++.+-..|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355678888889999999999999888887754221 334444455667778888999988888877
No 313
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.49 E-value=2.8 Score=39.06 Aligned_cols=106 Identities=13% Similarity=0.095 Sum_probs=67.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCH
Q 006624 119 RNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRST---CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTA 195 (638)
Q Consensus 119 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 195 (638)
+|.++++.+-...+..-....+++++...+-.+.... ..++. +-..+++.+.+ -++++++.+...=+..|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccch
Confidence 3555665555566655566667777777666554421 01111 11223333333 3566888888777888888888
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006624 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
.+++.+++.+.+.+++.+|..+.-.|.....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 8888888888888888888887777766544
No 314
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.45 E-value=9.9 Score=39.02 Aligned_cols=132 Identities=14% Similarity=0.130 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 006624 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLM 206 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (638)
.-+.++..+-++|..++|++ ..+|+.-.. ....+.|+++.|.++..+.. +..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~---------~s~D~d~rF---elal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALE---------LSTDPDQRF---ELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhh---------cCCChhhhh---hhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 45556666666776666654 333433222 34567899999998876643 6778999999999
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006624 207 QEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKAL 286 (638)
Q Consensus 207 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 286 (638)
+.|++..|.+.|..... |..|+-.+...|+-+.-..+-....+.|. .|.-..+|...|+++++.
T Consensus 678 ~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECL 741 (794)
T ss_pred hcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHH
Confidence 99999999999988755 45566677777877655555555555552 234445677899999999
Q ss_pred HHHHHH
Q 006624 287 GLVQEM 292 (638)
Q Consensus 287 ~~~~~m 292 (638)
+++.+-
T Consensus 742 ~lLi~t 747 (794)
T KOG0276|consen 742 ELLIST 747 (794)
T ss_pred HHHHhc
Confidence 888654
No 315
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.43 E-value=1.1 Score=26.21 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 584 SYNTILGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 609 (638)
+|..+..+|...|++++|+..+++.+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 45555566666666666666666655
No 316
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.27 E-value=1.7 Score=25.23 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.|..+...+.+.|++++|++.|++..+..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 45556666666677777777666666544
No 317
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.20 E-value=16 Score=30.32 Aligned_cols=18 Identities=17% Similarity=0.506 Sum_probs=7.7
Q ss_pred HhcCCHhHHHHHHHHHHh
Q 006624 206 MQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~ 223 (638)
+..|++++|+.+|+++..
T Consensus 55 i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 55 IARGNYDEAARILRELLS 72 (153)
T ss_pred HHcCCHHHHHHHHHhhhc
Confidence 334444444444444433
No 318
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.10 E-value=0.29 Score=41.03 Aligned_cols=129 Identities=14% Similarity=0.154 Sum_probs=67.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006624 483 MIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGG 562 (638)
Q Consensus 483 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 562 (638)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45555556666666666666665543445566666666666666656666655511 11112234555556666
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCc
Q 006624 563 PKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDED 633 (638)
Q Consensus 563 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 633 (638)
+++|.-++.++-... ..+..+...++++.|.+++.+ .++...|..+++.|...++.
T Consensus 86 ~~~a~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHHHHHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTCT
T ss_pred HHHHHHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCcc
Confidence 666666555543210 001112233444444433322 34577888888888776654
No 319
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.98 E-value=1.2 Score=25.95 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 584 SYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
.|..+..++.+.|++++|.+.+++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455556666666666666666666553
No 320
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.80 E-value=2.1 Score=40.28 Aligned_cols=54 Identities=11% Similarity=0.061 Sum_probs=31.1
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006624 168 NILGKAKMVNKALSIFYQIKSRKCKP-TANTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
+-|.++|++++|+..|...... .| |++++..-..+|.+..+|..|..-.+..+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4455666666666666655544 22 556666666666666666655555555444
No 321
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.43 E-value=3.3 Score=38.64 Aligned_cols=100 Identities=14% Similarity=0.143 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006624 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNC--FPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTT 271 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 271 (638)
.+.+-..++..--...+++.+...+-+++....+ .|+ .+-..+++.+.+ -+.++++.++..=+..|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~-~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRN-WTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcc-ccHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHH
Confidence 3333444444444455566666666665543111 011 111222333322 245567777777677777778888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 272 LVSIYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m~~~ 295 (638)
+++.+.+.+++.+|..+.-.|...
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888877777777666554
No 322
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.18 E-value=17 Score=31.32 Aligned_cols=57 Identities=18% Similarity=0.306 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCC-----------HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006624 196 NTYNSMILMLMQEGY-----------YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
.++..+..+|...+. +++|.+.|++..... |+...|+.-+.... +|-+++.++.+.+
T Consensus 70 dAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~---P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 70 DALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDED---PNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcC---CCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 455555555544322 445555555555543 56666665555442 2555555555443
No 323
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.00 E-value=30 Score=32.31 Aligned_cols=71 Identities=11% Similarity=0.175 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHhhHH
Q 006624 550 HNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA-----KGFEYDQITYS 621 (638)
Q Consensus 550 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~ 621 (638)
++.....|..+|.+.+|.++.++....+ +.+...|..++..+...||--+|.+.++++.+ .|+..|..+++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 3445567778888888888888877643 23566677788888888887777777766643 36666665543
No 324
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=85.87 E-value=42 Score=33.95 Aligned_cols=99 Identities=10% Similarity=0.025 Sum_probs=69.8
Q ss_pred CCCHhhH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHhhh-CCCCCCHHH
Q 006624 509 KPDVYTY-NALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLA--KSGGPKRAMEIFTKMQH-SEIKPDAVS 584 (638)
Q Consensus 509 ~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~-~~~~p~~~~ 584 (638)
.|+..|+ +.++..+.+.|-..+|...+..+... .+|+...|..++..-. ..-+..-+..+++.|.. .| .|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 5666665 45677777888889999999998886 4567777777765422 12237778888888876 45 56777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 585 YNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 585 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
|-..+.-=...|..+.+-.++.+..+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 77776666678888887777666554
No 325
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.82 E-value=12 Score=32.79 Aligned_cols=73 Identities=21% Similarity=0.096 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHccCChHHH
Q 006624 177 NKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNC--FPDTVTYSALISAFGKLGRDISA 250 (638)
Q Consensus 177 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 250 (638)
+.|.+.|-++...+.--++.....+...|. ..+.++++.++.+.++.... .+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 456666666655544434444444444443 55566666666665543211 25566666666666666666655
No 326
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.61 E-value=2.2 Score=26.19 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006624 196 NTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4556666666666666666666666543
No 327
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.51 E-value=2.2 Score=26.18 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 583 VSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888888888888888888887754
No 328
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.93 E-value=25 Score=30.97 Aligned_cols=73 Identities=5% Similarity=0.042 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHhcCCHhHHH
Q 006624 142 GVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSR---KCKPTANTYNSMILMLMQEGYYEKIH 215 (638)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~ 215 (638)
++|.+.|-.+...+.--++.....++..|. ..+.++|+.++.+..+. +-.+|+..+.+|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 567777777777766667777777777776 45788888888877654 33678888999999999999888875
No 329
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.67 E-value=28 Score=34.94 Aligned_cols=38 Identities=5% Similarity=-0.133 Sum_probs=25.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006624 520 SGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLA 558 (638)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 558 (638)
-.|...|+.-.|.+.|.+.... +..++..|-.|..+|.
T Consensus 343 ~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 343 LLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred HHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 3456677777777777777664 3456677777776664
No 330
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.39 E-value=60 Score=34.46 Aligned_cols=150 Identities=17% Similarity=0.191 Sum_probs=73.3
Q ss_pred hCCCHHHHHHHHHHHhh-------CCCCCCHHHHHHHHHHHHhcC-----CHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006624 172 KAKMVNKALSIFYQIKS-------RKCKPTANTYNSMILMLMQEG-----YYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
...+.+.|...|....+ .| .....+-+..+|.+.. +.+.|+.+|......+. |+...+-..+.
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~ 335 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN--PDAQYLLGVLY 335 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC--chHHHHHHHHH
Confidence 44577777777776655 33 2334455555555532 45557777776666554 55544433333
Q ss_pred HHHc-cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006624 240 AFGK-LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYF----KLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRA 314 (638)
Q Consensus 240 ~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 314 (638)
.... ..+...|.++|....+.|. ...+-.+..+|. ...+.+.|..++.+.-+.|. |....-...+..+..
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~- 410 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV- 410 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-
Confidence 3222 2345666666666666652 222222222222 12345666666666666552 222222222222323
Q ss_pred CCHHHHHHHHHHHHHcC
Q 006624 315 GRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 315 g~~~~A~~~~~~~~~~~ 331 (638)
++++.+.-.+..+.+.|
T Consensus 411 ~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 411 GRYDTALALYLYLAELG 427 (552)
T ss_pred ccccHHHHHHHHHHHhh
Confidence 55555555555444443
No 331
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=84.28 E-value=46 Score=35.51 Aligned_cols=44 Identities=16% Similarity=0.288 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhcCC----------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006624 106 NVKIQFFKWAGRRR----------------NFEHNSTTYMALIRCLDETRMIGVMWKSIQD 150 (638)
Q Consensus 106 ~~a~~~f~~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 150 (638)
...-.+++|+-+.. ...+++..|+ .+..+.-.|+++.|..++..
T Consensus 114 ~v~~~Ll~WvNr~~~~~~~~~~~~vl~~~~p~~~~p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 114 PVPEQLLDWVNRFHFPPSEELAEEVLSSEPPYEHDPDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHHHHHHHHTTS--SHHHHHTTSCSS-HSCSGSHHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred chHHHHHHHHHHhCCCCchhHHHHHhccCCCCccchhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 45677888883222 2334578887 67788888999999998853
No 332
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.76 E-value=19 Score=31.51 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=12.8
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhC
Q 006624 202 ILMLMQEGYYEKIHELYNEMCNE 224 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~ 224 (638)
..-+.++|++++|..-|...+..
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~ 124 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES 124 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh
Confidence 34455556666666665555554
No 333
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.32 E-value=70 Score=34.39 Aligned_cols=169 Identities=14% Similarity=0.186 Sum_probs=94.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006624 166 IVNILGKAKMVNKALSIFYQIKSRKCKP---TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
=++.+.+.+.+++|+..-+..... .| -...+..+|..+.-.|++++|-...-.|.. .+..-|...+..+.
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g-----n~~~eWe~~V~~f~ 434 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG-----NNAAEWELWVFKFA 434 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc-----chHHHHHHHHHHhc
Confidence 356778888888888877665543 23 234566778888888888888888888766 45666777777776
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006624 243 KLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYG 322 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 322 (638)
..+.......+ +.......+...|..++..+.. . .-..+++..... +...|..+.-.-+-.-
T Consensus 435 e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~---~~~~F~e~i~~W----p~~Lys~l~iisa~~~------- 496 (846)
T KOG2066|consen 435 ELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-S---DVKGFLELIKEW----PGHLYSVLTIISATEP------- 496 (846)
T ss_pred cccccchhhcc---CCCCCcccCchHHHHHHHHHHH-H---HHHHHHHHHHhC----ChhhhhhhHHHhhcch-------
Confidence 66655433222 2222122356677777776665 1 222222222222 3333333221111111
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 323 LFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 323 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 364 (638)
+..+. -. +...-..|+..|...+++..|..++-...+
T Consensus 497 ---q~~q~-Se-~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 497 ---QIKQN-SE-STALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred ---HHHhh-cc-chhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 11111 11 122223377888888888888888776643
No 334
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=82.23 E-value=11 Score=30.05 Aligned_cols=61 Identities=13% Similarity=0.237 Sum_probs=42.7
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 006624 565 RAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEA 626 (638)
Q Consensus 565 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 626 (638)
+..+-++.+....+.|++.....-+++|.+.+|+..|.++|+-.+.+ +.+....|..+++-
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~e 127 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVKE 127 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHHH
Confidence 44455556666677888888888888888888888888888877754 33444456666654
No 335
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.14 E-value=10 Score=33.55 Aligned_cols=56 Identities=13% Similarity=0.055 Sum_probs=30.0
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 006624 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMK 258 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 258 (638)
.+..+.+.++..+|+...++-++..+ .|......++..+|-.|++++|..-++-.-
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakP--tda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKP--TDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCC--ccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 34445555556666655555555443 344455555555555555555555444443
No 336
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=81.57 E-value=4.6 Score=38.11 Aligned_cols=92 Identities=8% Similarity=-0.126 Sum_probs=65.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 006624 132 IRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYY 211 (638)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 211 (638)
.+-|.++|.|++|+++|...+... +.++.++..-..+|.+...+..|..-.+.....+ ..-..+|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 456788999999999998877632 3488888888899999999988887776665542 11233455555555556777
Q ss_pred hHHHHHHHHHHhCC
Q 006624 212 EKIHELYNEMCNEG 225 (638)
Q Consensus 212 ~~A~~~~~~~~~~~ 225 (638)
.+|.+-++..+...
T Consensus 182 ~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 182 MEAKKDCETVLALE 195 (536)
T ss_pred HHHHHhHHHHHhhC
Confidence 77777777777654
No 337
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.15 E-value=2.9 Score=23.93 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=14.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 200 SMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 200 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.+..++.+.|++++|.+.|+++++..
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 34455555566666666666655543
No 338
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.89 E-value=12 Score=33.07 Aligned_cols=76 Identities=16% Similarity=0.045 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHH
Q 006624 128 YMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRK--CKPTANTYNSMILM 204 (638)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~ 204 (638)
.+.-++.+.+.+..++++...++-++.. +.+...-..++..++-.|++++|..-++-..+.. ..+....|..+|++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3455677778888888888888777753 5566667777888888888888887777665542 23345566666654
No 339
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.89 E-value=17 Score=31.31 Aligned_cols=76 Identities=18% Similarity=0.207 Sum_probs=39.5
Q ss_pred HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC-----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006624 211 YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGR-----------DISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL 279 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 279 (638)
+++|+.-|++.+..+| ....++..+..++...+. +++|.+.|++..+. .|+..+|+.-+....
T Consensus 51 iedAisK~eeAL~I~P--~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~-- 124 (186)
T PF06552_consen 51 IEDAISKFEEALKINP--NKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA-- 124 (186)
T ss_dssp HHHHHHHHHHHHHH-T--T-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH--
Confidence 4556666666766664 344666666666664432 34444444444443 566667766665543
Q ss_pred CCHHHHHHHHHHHHhCC
Q 006624 280 GEVEKALGLVQEMKGKG 296 (638)
Q Consensus 280 g~~~~A~~~~~~m~~~~ 296 (638)
+|-++..++.+.+
T Consensus 125 ----kap~lh~e~~~~~ 137 (186)
T PF06552_consen 125 ----KAPELHMEIHKQG 137 (186)
T ss_dssp ----THHHHHHHHHHSS
T ss_pred ----hhHHHHHHHHHHH
Confidence 3445555554443
No 340
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.69 E-value=23 Score=27.00 Aligned_cols=78 Identities=18% Similarity=0.229 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 528 IDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKD 607 (638)
Q Consensus 528 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 607 (638)
.++|..+-+-+...+.. ....-.+-+..+...|+|++|..+.+.+ ..||...|.++. -.+.|..+++...+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHH
Confidence 34555554444443211 1222222334566777777777766655 357777776653 3566777766666666
Q ss_pred HHhCC
Q 006624 608 MNAKG 612 (638)
Q Consensus 608 m~~~~ 612 (638)
|...|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 66555
No 341
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.44 E-value=3.3 Score=26.10 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=10.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhh
Q 006624 553 ILNGLAKSGGPKRAMEIFTKMQ 574 (638)
Q Consensus 553 l~~~~~~~g~~~~A~~~~~~m~ 574 (638)
+..+|...|+.+.|.+++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 3444445555555555554444
No 342
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=79.93 E-value=1.6e+02 Score=36.40 Aligned_cols=317 Identities=10% Similarity=0.013 Sum_probs=154.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 006624 130 ALIRCLDETRMIGVMWKSIQDMVRST--CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ 207 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (638)
.+..+=.+.+.+.+|.-.++.-.... .......+..+...|+.-+++|....+...-.. .|+. + .-|-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~sl--~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPSL--Y-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---CccH--H-HHHHHHHh
Confidence 34445556777777777777631110 011123344444577888888777776664111 1222 2 23344556
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHH
Q 006624 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTL-VSIYFKLGEVEKAL 286 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~ 286 (638)
.|++..|..-|+.+.+.++ +...+++.+++.....|.++..+...+-...+ ..+....++++ +.+--+.++++...
T Consensus 1462 ~g~~~da~~Cye~~~q~~p--~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDP--DKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hccHHHHHHHHHHhhcCCC--ccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 7888888888888887664 45667777777777777777666655444432 22233333332 23335666666665
Q ss_pred HHHHHHHhCCCCCCHHHHHHH--HHHHHhc--CCHHHHHHHHHHHHHcCCCC---------CHHHHHHHHHHHHccCCHH
Q 006624 287 GLVQEMKGKGCALTVYTYTEL--IKGLGRA--GRVEDAYGLFMNMLKEGCKP---------DIVLINNLINVLGRAGRLE 353 (638)
Q Consensus 287 ~~~~~m~~~~~~~~~~~~~~l--i~~~~~~--g~~~~A~~~~~~~~~~~~~p---------~~~~~~~l~~~~~~~g~~~ 353 (638)
..+. .. +..+|... +....+. .+.-.-.+..+.+.+.-+.| =...|..++....-..
T Consensus 1539 ~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e--- 1608 (2382)
T KOG0890|consen 1539 SYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE--- 1608 (2382)
T ss_pred hhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH---
Confidence 5544 11 22222222 2222211 11111112222222211110 0012222222211111
Q ss_pred HHHHHHHHHHHCCCCCC------HhHHHHHHHHHHhcCChHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCC
Q 006624 354 DALKLFNKMEALQCKPN------VVTYNTVIKSLFESKAPASEASAWFEKMKAN----GVL-PSPFTYSILIDGFCKTNR 422 (638)
Q Consensus 354 ~A~~~~~~~~~~~~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~ 422 (638)
-....+... +..++ ...|..-+..-....+..+-+...-+.+... +.. --..+|....+...+.|+
T Consensus 1609 -l~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~ 1685 (2382)
T KOG0890|consen 1609 -LENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH 1685 (2382)
T ss_pred -HHHHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc
Confidence 111111111 11111 1222222221111111111111111222221 111 124567777888888999
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 006624 423 VEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEY 471 (638)
Q Consensus 423 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 471 (638)
++.|...+-...+.+ -+..+.-....+...|+...|..++++..+.
T Consensus 1686 ~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1686 LQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 999988877776665 3356666777888999999999999998865
No 343
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=79.74 E-value=65 Score=31.68 Aligned_cols=65 Identities=14% Similarity=-0.014 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 406 SPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFP---PCPAAYCSLINGYGKAKRYEAANELFLELKE 470 (638)
Q Consensus 406 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (638)
...+|..++..+.+.|+++.|...+..+...+.. ..+.....-+..+...|+.++|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456777788888888888888888887764311 1344555556667777888888888877776
No 344
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=79.63 E-value=56 Score=32.97 Aligned_cols=107 Identities=19% Similarity=0.124 Sum_probs=65.0
Q ss_pred HHhcCCHHHHHHHHHHHH---hCCC--CCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHH-------CCCCCC-----
Q 006624 487 FGKCGRLSDAVDLFNEMK---KLRC--KPD---VYTYNALMSGMVRAGMIDDAYSLLRRMEE-------DGCVPD----- 546 (638)
Q Consensus 487 ~~~~g~~~~A~~~~~~m~---~~~~--~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~p~----- 546 (638)
+...|++.+|.+++...- ..|. .|. -..||.|.-...+.|.+.-+..+|.++++ .|++|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 445677777777765431 1111 111 12245555555566666666666666653 354442
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc
Q 006624 547 ------INSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRA 595 (638)
Q Consensus 547 ------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 595 (638)
..+|| ..-.|...|++-.|.+.|.+.... +..++..|-.+..+|...
T Consensus 330 s~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 12343 344577889999999999988762 455788899999888643
No 345
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.19 E-value=2.8 Score=22.72 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=12.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 006624 586 NTILGCLSRAGMFEEAARLMK 606 (638)
Q Consensus 586 ~~l~~~~~~~g~~~~A~~~~~ 606 (638)
..+..++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345556666666666666554
No 346
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.17 E-value=36 Score=28.33 Aligned_cols=53 Identities=8% Similarity=0.071 Sum_probs=38.1
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006624 207 QEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 207 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
..++++++..+++.|.-..|..+...++..++ +...|++++|.++|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 47788888888888877665545555555554 456788888888888887754
No 347
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=78.68 E-value=98 Score=33.08 Aligned_cols=34 Identities=21% Similarity=0.156 Sum_probs=0.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 006624 593 SRAGMFEEAARLMKDMNAKGFEYDQITYSSILEA 626 (638)
Q Consensus 593 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 626 (638)
.+.|++.+|.+.+-.+.+.++.|...-...|.++
T Consensus 506 ~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 506 YDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ----------------------------------
T ss_pred HhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 3457888888877777777777776655544443
No 348
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=78.36 E-value=6.5 Score=22.67 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
+|..+...|.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555666666666666666666554
No 349
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.32 E-value=28 Score=26.57 Aligned_cols=11 Identities=18% Similarity=0.160 Sum_probs=4.6
Q ss_pred hCCCHHHHHHH
Q 006624 172 KAKMVNKALSI 182 (638)
Q Consensus 172 ~~g~~~~A~~~ 182 (638)
.+|+|++|..+
T Consensus 51 NrG~Yq~Al~l 61 (115)
T TIGR02508 51 NRGDYQSALQL 61 (115)
T ss_pred ccchHHHHHHh
Confidence 34444444443
No 350
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=77.94 E-value=15 Score=37.67 Aligned_cols=87 Identities=10% Similarity=0.001 Sum_probs=37.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 006624 138 TRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHEL 217 (638)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 217 (638)
.|+...|.+.+.........-.......+.+...+.|...+|-.++.+..... ...+-++.++.+++....+.+.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 34444444444444332211122223334444444444444444444443332 12334444444444444555555555
Q ss_pred HHHHHhCC
Q 006624 218 YNEMCNEG 225 (638)
Q Consensus 218 ~~~~~~~~ 225 (638)
|++..+..
T Consensus 699 ~~~a~~~~ 706 (886)
T KOG4507|consen 699 FRQALKLT 706 (886)
T ss_pred HHHHHhcC
Confidence 55444433
No 351
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.91 E-value=3.6 Score=22.32 Aligned_cols=14 Identities=14% Similarity=-0.107 Sum_probs=5.4
Q ss_pred HHHHhCCCHHHHHH
Q 006624 168 NILGKAKMVNKALS 181 (638)
Q Consensus 168 ~~~~~~g~~~~A~~ 181 (638)
..+...|++++|..
T Consensus 9 ~~~~~~G~~~eA~~ 22 (26)
T PF07721_consen 9 RALLAQGDPDEAER 22 (26)
T ss_pred HHHHHcCCHHHHHH
Confidence 33333333333333
No 352
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=77.36 E-value=7.1 Score=22.50 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 584 SYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566677777888888888888877664
No 353
>PRK10941 hypothetical protein; Provisional
Probab=77.29 E-value=35 Score=32.00 Aligned_cols=74 Identities=12% Similarity=-0.056 Sum_probs=39.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 006624 164 SEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALI 238 (638)
Q Consensus 164 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 238 (638)
+.+-.+|.+.++++.|+++.+.+....+. ++.-+.-..-.|.+.|.+..|..-++..++..+..|+.......+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 34444555666666666666666555332 444455555556666666666666666555444334444333333
No 354
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=76.63 E-value=0.75 Score=38.50 Aligned_cols=54 Identities=22% Similarity=0.378 Sum_probs=30.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 237 LISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQ 290 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 290 (638)
+++.+.+.+......++++.+...+...+....+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344555556666666666666655444456666666666666655555555554
No 355
>PRK09687 putative lyase; Provisional
Probab=75.77 E-value=74 Score=30.20 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHH
Q 006624 229 PDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEV----EKALGLVQEM 292 (638)
Q Consensus 229 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m 292 (638)
+|.......+.++...|. +++...+..+... +|...-...+.++...|+. +++...+..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 444444444444444443 2233333333322 3444444445555555442 3445555444
No 356
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=75.01 E-value=4.3 Score=23.17 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=14.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhC
Q 006624 165 EIVNILGKAKMVNKALSIFYQIKSR 189 (638)
Q Consensus 165 ~l~~~~~~~g~~~~A~~~~~~~~~~ 189 (638)
.+..++.+.|++++|.+.|+++.+.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445555566666666666666544
No 357
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=74.12 E-value=12 Score=24.05 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=25.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 006624 592 LSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEA 626 (638)
Q Consensus 592 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 626 (638)
..+.|..+++..++++|.+.|+..+...|..+++-
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 45667777777788888777877777777776654
No 358
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=74.07 E-value=84 Score=30.01 Aligned_cols=98 Identities=16% Similarity=0.099 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHH----HHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCH----
Q 006624 336 IVLINNLINVLGRAGRLEDALKLFNKM----EALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSP---- 407 (638)
Q Consensus 336 ~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---- 407 (638)
...+......||+.||.+.|.+.+... ...|.+.|+..+..-+..++...+......+..+.+.+.|..-+-
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 345666777889999998888877655 445778888888777776666655554445555666666654332
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 408 FTYSILIDGFCKTNRVEKAHLLLEEMEE 435 (638)
Q Consensus 408 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 435 (638)
.+|..+- +....++.+|-.+|-+...
T Consensus 184 KvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 184 KVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 2232221 2345678888888776654
No 359
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.70 E-value=7.5 Score=24.51 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=8.3
Q ss_pred HHHHccCChHHHHHHHHHHH
Q 006624 239 SAFGKLGRDISAIRLFDEMK 258 (638)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~m~ 258 (638)
.+|...|+.+.|.+++++..
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 33444444444444444443
No 360
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=72.42 E-value=87 Score=29.48 Aligned_cols=58 Identities=14% Similarity=0.106 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHH
Q 006624 263 QPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGK-GCALTVYTYTELIKGLGRAGRVEDA 320 (638)
Q Consensus 263 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A 320 (638)
.++..+...++..++..+++.+-.++++..... ++.-|...|..+|+.....|+..-.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~ 257 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVM 257 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHH
Confidence 344444444555555555555555554444333 3333444555555555555554433
No 361
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.96 E-value=1.5e+02 Score=32.06 Aligned_cols=99 Identities=11% Similarity=0.066 Sum_probs=68.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 006624 135 LDETRMIGVMWKSIQDMVRSTCVM---GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYY 211 (638)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 211 (638)
+.+.+.+++|++..+.-.. ..+ -......+++.+...|++++|....-.|... +..-|..-+..+...++.
T Consensus 366 ll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccccc
Confidence 5677888899888775433 233 3456777888888999999999998888765 777777777777777776
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc
Q 006624 212 EKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243 (638)
Q Consensus 212 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (638)
.....+ + -.++...+...|..++..+..
T Consensus 440 ~~Ia~~---l-Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 440 TDIAPY---L-PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred chhhcc---C-CCCCcccCchHHHHHHHHHHH
Confidence 553332 2 223323456678887777766
No 362
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.56 E-value=85 Score=28.99 Aligned_cols=50 Identities=20% Similarity=0.321 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006624 173 AKMVNKALSIFYQIKSRKCKPTA---NTYNSMILMLMQEGYYEKIHELYNEMC 222 (638)
Q Consensus 173 ~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 222 (638)
..++++|+.-|+++.+....... .+...++....+.|++++..+.|.+++
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 34677777777777665322222 234456666777777777777777664
No 363
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=70.49 E-value=5 Score=32.31 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=23.5
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 006624 593 SRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 593 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
.+.|.-.+|..+|++|++.|-+|| .|+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 445666778888888888887777 467776654
No 364
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=69.48 E-value=1.1e+02 Score=29.27 Aligned_cols=159 Identities=13% Similarity=0.058 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc-----C-
Q 006624 457 RYEAANELFLELKEYCGCSSARVYAVMIKHFGK----CGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRA-----G- 526 (638)
Q Consensus 457 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----g- 526 (638)
+..+|.+++....+.|. ......|...|.. ..+..+|...|++..+.|..+...+...+...|..- -
T Consensus 92 ~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 92 DKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred cHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 45566666665554433 2222233444433 336667777777776666333212223333333222 1
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC-----
Q 006624 527 -MIDDAYSLLRRMEEDGCVPDINSHNIILNGLAK----SGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAG----- 596 (638)
Q Consensus 527 -~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g----- 596 (638)
+...|...|.++...+ +......+...|.. ..+..+|...|++..+.|. ......+. .+...|
T Consensus 169 ~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~ 241 (292)
T COG0790 169 YDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKK 241 (292)
T ss_pred HHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchh
Confidence 2346777777777765 44444445544432 2367788888888777654 22222222 444444
Q ss_pred ----------CHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 006624 597 ----------MFEEAARLMKDMNAKGFEYDQITYSSILE 625 (638)
Q Consensus 597 ----------~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 625 (638)
+...|...+......+..........+-.
T Consensus 242 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 280 (292)
T COG0790 242 AAFLTAAKEEDKKQALEWLQKACELGFDNACEALRALKI 280 (292)
T ss_pred hhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 77888888888888777776666663333
No 365
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=68.53 E-value=94 Score=28.31 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=22.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHh
Q 006624 519 MSGMVRAGMIDDAYSLLRRMEEDGCVPDIN-SHNIILNGLAKSGGPKRAMEIFTKM 573 (638)
Q Consensus 519 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m 573 (638)
+.++.+..+++.+.+--.+.++ +.||.+ ....+..++.....+++|+..+.+.
T Consensus 51 alchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 51 ALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3344444455544444444444 233322 2222333344444455555555444
No 366
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.25 E-value=17 Score=26.35 Aligned_cols=17 Identities=12% Similarity=0.188 Sum_probs=7.1
Q ss_pred HHHHHHHHhcCCHHHHH
Q 006624 586 NTILGCLSRAGMFEEAA 602 (638)
Q Consensus 586 ~~l~~~~~~~g~~~~A~ 602 (638)
..++.+|+..|++.+++
T Consensus 47 G~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 47 GYLIQAHMEWGKYREML 63 (80)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 367
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=67.22 E-value=1.1e+02 Score=28.75 Aligned_cols=62 Identities=13% Similarity=0.146 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006624 299 LTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE-GCKPDIVLINNLINVLGRAGRLEDALKLFN 360 (638)
Q Consensus 299 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 360 (638)
++..+....+..+++.+++..-.++++..... ++..|...|..+|....+.|+..-..++.+
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 34445555555555555555555555554443 344455555555555555555554444443
No 368
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=67.20 E-value=38 Score=27.09 Aligned_cols=47 Identities=17% Similarity=0.272 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC
Q 006624 143 VMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSR 189 (638)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 189 (638)
+..+-+..+...+..|++.+....++++.+-+++..|.++|+-++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44455666666778888888888888888888888898888888765
No 369
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=67.06 E-value=1.6e+02 Score=30.28 Aligned_cols=181 Identities=13% Similarity=0.077 Sum_probs=113.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006624 264 PTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLI 343 (638)
Q Consensus 264 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 343 (638)
.|.....+++..+..+..+.-...+..+|..-|- +-..|..++.+|..+ ..+.-..+|+++.+..+. |++.-..|+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 4666777788888888888888888888887653 677888888888877 567778888888877554 555556666
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCC-----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHH
Q 006624 344 NVLGRAGRLEDALKLFNKMEALQCKP-----NVVTYNTVIKSLFESKAPASEASAWFEKMKA-NGVLPSPFTYSILIDGF 417 (638)
Q Consensus 344 ~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~ 417 (638)
..|-+ ++...+...|.++...=++. -...|.-+... -++..+....+...+.. .|...-...+.-+-.-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~---i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL---IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh---ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 66655 77777777777765422110 01123333321 12222222233233322 23333344555556678
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 006624 418 CKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYG 453 (638)
Q Consensus 418 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 453 (638)
....++++|++++..+.+.+ ..|..+-..++.-+.
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lR 250 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENLR 250 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence 88899999999999888776 556666555555443
No 370
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=66.38 E-value=78 Score=29.56 Aligned_cols=87 Identities=17% Similarity=0.083 Sum_probs=55.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----
Q 006624 414 IDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGK---- 489 (638)
Q Consensus 414 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 489 (638)
|++++..+++.+++...-+--+..-+..+...-.-|-.|.|.+....+.++-..........+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5677788888877765544333222333455556666788888888888777777764333344446666655543
Q ss_pred -cCCHHHHHHHH
Q 006624 490 -CGRLSDAVDLF 500 (638)
Q Consensus 490 -~g~~~~A~~~~ 500 (638)
.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 58888888776
No 371
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.36 E-value=1e+02 Score=27.97 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=12.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 006624 274 SIYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~m~~~ 295 (638)
..-...+++.+|+++|++....
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666665544
No 372
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=66.03 E-value=11 Score=20.62 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
.|..+...+...|++++|...|+...+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344555555566666666666655554
No 373
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=64.89 E-value=30 Score=30.59 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 578 IKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 578 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
..|++.+|..++.++...|+.++|.++.+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 357777777777777777777777777777764
No 374
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=64.80 E-value=62 Score=33.51 Aligned_cols=100 Identities=10% Similarity=-0.014 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 126 TTYMALIRCLDE-TRMIGVMWKSIQDMVRSTCVMG-PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 126 ~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
..+..+...|.+ .|+..+|...+....--..+.. ....-++...+-+.|...+|--++............ -+..+..
T Consensus 213 w~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~-n~y~l~~ 291 (886)
T KOG4507|consen 213 WVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTS-NYYTLGN 291 (886)
T ss_pred HHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccc-cceeHHH
Confidence 344555666655 6777777777766544211111 124556677777788777776666555443111111 1445666
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCC
Q 006624 204 MLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
+++..|.+...+.-|+...+.++
T Consensus 292 i~aml~~~N~S~~~ydha~k~~p 314 (886)
T KOG4507|consen 292 IYAMLGEYNHSVLCYDHALQARP 314 (886)
T ss_pred HHHHHhhhhhhhhhhhhhhccCc
Confidence 67777777777777777666554
No 375
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=64.79 E-value=1.3e+02 Score=28.51 Aligned_cols=19 Identities=11% Similarity=0.190 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhcCCHHHH
Q 006624 548 NSHNIILNGLAKSGGPKRA 566 (638)
Q Consensus 548 ~~~~~l~~~~~~~g~~~~A 566 (638)
.+|.-|+.++|..|+.+-.
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 3466677777777766544
No 376
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.28 E-value=1.2e+02 Score=28.04 Aligned_cols=59 Identities=14% Similarity=0.129 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCC-------HhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 006624 411 SILIDGFCKTNRVEKAHLLLEEMEEKGF----PPC-------PAAYCSLINGYGKAKRYEAANELFLELK 469 (638)
Q Consensus 411 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~ 469 (638)
..+...|...+.+.+..++++++...-- ..| ...|..-|+.|....+-.+...++++..
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 3455566666666666666666654311 111 1234444555555555555555555443
No 377
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=64.17 E-value=20 Score=25.95 Aligned_cols=49 Identities=8% Similarity=0.060 Sum_probs=37.9
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 524 RAGMIDDAYSLLRRMEEDGCVPD--INSHNIILNGLAKSGGPKRAMEIFTK 572 (638)
Q Consensus 524 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 572 (638)
...+.++|+..|...++.-..+. ..++..++.+++..|++.+++++-..
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999998643332 34667788899999999988877654
No 378
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=63.31 E-value=88 Score=26.06 Aligned_cols=83 Identities=20% Similarity=0.311 Sum_probs=49.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCC-----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006624 338 LINNLINVLGRAGRLEDALKLFNKMEALQC-----KPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSI 412 (638)
Q Consensus 338 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 412 (638)
..|.++......+.+...+.+++.+..... ..+...|+.++.+........-++..+|.-+.+.+.+.++.-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 356677766777777777777766632110 134455666666665544445555666666666666666666666
Q ss_pred HHHHHHhc
Q 006624 413 LIDGFCKT 420 (638)
Q Consensus 413 l~~~~~~~ 420 (638)
++.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 66655443
No 379
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=62.13 E-value=2.3e+02 Score=30.59 Aligned_cols=64 Identities=8% Similarity=-0.034 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-------CHHHHHHHHHHHhhC
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK-------MVNKALSIFYQIKSR 189 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~ 189 (638)
+...| .+|--|.|.|++++|.++..+.... .......+...+..|.... .-++...-|++....
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 34567 6667788999999999999554432 3455567777788876642 223556666666655
No 380
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=61.18 E-value=1.7e+02 Score=28.56 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=20.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 006624 339 INNLINVLGRAGRLEDALKLFNKMEALQC 367 (638)
Q Consensus 339 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 367 (638)
+..+.....+.|..+.|..+++.+.+.++
T Consensus 157 ~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 157 FLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 33344455678889999999988877654
No 381
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=60.37 E-value=47 Score=21.99 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=21.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 006624 342 LINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVI 378 (638)
Q Consensus 342 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 378 (638)
+.-++.+.|++++|.+..+.+.+ +.|+......|-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHH
Confidence 45566777777777777777766 336655554443
No 382
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=58.86 E-value=97 Score=25.12 Aligned_cols=43 Identities=14% Similarity=0.167 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 006624 213 KIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFD 255 (638)
Q Consensus 213 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 255 (638)
.+.++|..|...+....-...|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444444443333333444444444444444444444443
No 383
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=58.56 E-value=25 Score=24.20 Aligned_cols=26 Identities=31% Similarity=0.407 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006624 198 YNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 198 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
.-.+|.+|.+.|++++|.++.+++..
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33455555556666665555555543
No 384
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.20 E-value=25 Score=31.12 Aligned_cols=34 Identities=12% Similarity=-0.013 Sum_probs=18.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC
Q 006624 156 CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSR 189 (638)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 189 (638)
..|++.++..++.++...|+.++|.++..++...
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455555555555555555555555555555444
No 385
>PHA02875 ankyrin repeat protein; Provisional
Probab=58.01 E-value=71 Score=32.43 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=9.1
Q ss_pred HHHHHhcCCHhHHHHHHH
Q 006624 202 ILMLMQEGYYEKIHELYN 219 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~ 219 (638)
+...+..|+.+.+..+++
T Consensus 72 L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHCCCHHHHHHHHH
Confidence 334455666655444443
No 386
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=57.50 E-value=28 Score=23.98 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=14.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHH
Q 006624 233 TYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 233 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
---.++.++...|++++|.++++++.+
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334455666666666666666655543
No 387
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=57.45 E-value=4.9e+02 Score=32.77 Aligned_cols=150 Identities=9% Similarity=0.043 Sum_probs=87.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHH----hhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006624 165 EIVNILGKAKMVNKALSIFYQI----KSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 165 ~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
.+..+-.+++.+.+|...+++- ++. ......|-.+...|..-+++|....+...-.. . |+ ....|-.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-~---~s---l~~qil~ 1458 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-D---PS---LYQQILE 1458 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-C---cc---HHHHHHH
Confidence 4555666778888888888773 222 11223344444578888888877777664111 1 22 2334455
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHH
Q 006624 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTEL-IKGLGRAGRVED 319 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~ 319 (638)
....|++..|...|+.+.+.+ ++...+++.++......|.++..+-..+-..... .+....++++ +.+--+.++++.
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhh
Confidence 566788888888888888764 2336677777777777777777776555544432 2233333332 233345566655
Q ss_pred HHHHHH
Q 006624 320 AYGLFM 325 (638)
Q Consensus 320 A~~~~~ 325 (638)
......
T Consensus 1537 ~e~~l~ 1542 (2382)
T KOG0890|consen 1537 LESYLS 1542 (2382)
T ss_pred hhhhhh
Confidence 544443
No 388
>PF13934 ELYS: Nuclear pore complex assembly
Probab=56.57 E-value=1.1e+02 Score=27.81 Aligned_cols=125 Identities=12% Similarity=0.157 Sum_probs=72.1
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006624 480 YAVMIKHFG--KCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGL 557 (638)
Q Consensus 480 ~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 557 (638)
|...+.+|- ..+++++|.+.+-.- .+.|+- -.-++.++...|+.+.|..+++...-.. .+......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~- 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWF--PDKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCccc--HHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-
Confidence 444555543 457777777777322 122221 2246777888899999998887754321 223333334444
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 006624 558 AKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQI 618 (638)
Q Consensus 558 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 618 (638)
..+|.+.+|..+-+...+.. ....+..++..+..... + ...++++.+..+.+...
T Consensus 151 La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~~~~--~-~~~~~~Ll~LPl~~~EE 205 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLEECA--R-SGRLDELLSLPLDEEEE 205 (226)
T ss_pred HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHHHhh--h-hhHHHHHHhCCCChHHH
Confidence 66788999988888765421 14467777777665443 1 22366666555544443
No 389
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=56.55 E-value=2e+02 Score=28.02 Aligned_cols=118 Identities=10% Similarity=0.073 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH---cCCHHHHHHHH
Q 006624 459 EAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVR---AGMIDDAYSLL 535 (638)
Q Consensus 459 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~ 535 (638)
+.-+.+++++.+. .+.+......++..+.+..+.++..+.++++.... +-+...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~-np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKH-NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 3444555555555 33555555566666666666666666666665542 1234445555544332 12344444444
Q ss_pred HHHHHC------CC------CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 006624 536 RRMEED------GC------VPD-----INSHNIILNGLAKSGGPKRAMEIFTKMQHSEI 578 (638)
Q Consensus 536 ~~~~~~------~~------~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 578 (638)
.+.++. +. .++ ...+..+...+.++|..+.|..+++-+.+.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 443321 11 011 11222233344577888888888888877544
No 390
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.31 E-value=3.3e+02 Score=30.55 Aligned_cols=26 Identities=19% Similarity=0.393 Sum_probs=15.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhh
Q 006624 163 LSEIVNILGKAKMVNKALSIFYQIKS 188 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 188 (638)
|..++..|...|+.++|++++.+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 45556666666666666666666554
No 391
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=55.58 E-value=63 Score=24.45 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=13.8
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhC
Q 006624 201 MILMLMQEGYYEKIHELYNEMCNE 224 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~ 224 (638)
+.......|++++|.+.+++.++.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 334455566666666666665543
No 392
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=55.43 E-value=1.2e+02 Score=29.28 Aligned_cols=65 Identities=12% Similarity=0.074 Sum_probs=38.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHhhh-----CCCCCCHH
Q 006624 519 MSGMVRAGMIDDAYSLLRRMEED---GCVPDINSHN--IILNGLAKSGGPKRAMEIFTKMQH-----SEIKPDAV 583 (638)
Q Consensus 519 ~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~ 583 (638)
+...-+.++.++|+++++++.+. --.|+.+.|. .....+...||.+++.+.+.+..+ .++.|++.
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 33444556777777777777653 2235555443 344555667777777777777665 35555443
No 393
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=55.03 E-value=89 Score=23.51 Aligned_cols=53 Identities=19% Similarity=0.300 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC
Q 006624 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGR 246 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 246 (638)
|...-..+...+...|++++|++.+-.+++......+...-..++..+.-.|.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 45555556666666666666666666666554432334444444444444443
No 394
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=54.70 E-value=77 Score=23.97 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=28.3
Q ss_pred HhcCCHHHHHHHHHHhhh----CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 558 AKSGGPKRAMEIFTKMQH----SEIKPD----AVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 558 ~~~g~~~~A~~~~~~m~~----~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
.+.|++.+|.+.+.+..+ .+.... ....-.+.......|++++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 355666666555444433 111110 12222344556667888888888777664
No 395
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=54.56 E-value=1.9e+02 Score=27.20 Aligned_cols=70 Identities=14% Similarity=0.165 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHH----CCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006624 229 PDTVTYSALISAFGKLGRDISAIRLFDEMKE----NGLQPTAKIYTT-LVSIYFKLGEVEKALGLVQEMKGKGCA 298 (638)
Q Consensus 229 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~ 298 (638)
.-...+..+...|++.++.+.+.+...+..+ .|.+.|+..... |.-.|....-+++-++..+.|.++|..
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgD 187 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGD 187 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 3455677778888888888887777665543 355545433222 222233333356677777777777654
No 396
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=54.01 E-value=3.4e+02 Score=29.88 Aligned_cols=201 Identities=11% Similarity=0.054 Sum_probs=107.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhCCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNIL---GKAKMVNKALSIFYQIKSRKCKPTANTYNS 200 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 200 (638)
+...++.||..+.+.|+++.....-..|... .+.++..|-..+.-. ...+...++..+|++...... ++..|.-
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~--~v~iw~e 188 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN--SVPIWEE 188 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc--cchHHHH
Confidence 5667888999999999999888777777664 356666666555443 334677888888888776532 3444444
Q ss_pred HHHHHH-------hcCCHhHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHH
Q 006624 201 MILMLM-------QEGYYEKIHELYNEMCNEGNCFPD-----TVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKI 268 (638)
Q Consensus 201 l~~~~~-------~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 268 (638)
.+.-+. +.++++....+|.+.+..-....+ ...|.-+-..|...-..++...+|..-...+ .|..+
T Consensus 189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~--~D~~~ 266 (881)
T KOG0128|consen 189 VVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP--LDEDT 266 (881)
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc--chhhh
Confidence 443333 345677777888877654221111 1122222223333333355555665555443 23332
Q ss_pred HHHHHHHHHhc-------CCHHHHHHH-------HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006624 269 YTTLVSIYFKL-------GEVEKALGL-------VQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 269 ~~~li~~~~~~-------g~~~~A~~~-------~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
-+.=..-..+. .+++.|.+- ++...+.. .+--..|..+|+-.-+.|+.-.-..+++++...
T Consensus 267 ~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~-~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E 341 (881)
T KOG0128|consen 267 RGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKE-PIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAE 341 (881)
T ss_pred hHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Confidence 22222222211 122223222 22222221 123345566667777777766666666666543
No 397
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=53.76 E-value=2e+02 Score=27.09 Aligned_cols=60 Identities=13% Similarity=0.012 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006624 164 SEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 164 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
..-|.++++.+++.+++...-+--+.--+.-+.....=|-.|.+.|++..+.++-...+.
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 334555666666666555443332211111233333344455566666666665555554
No 398
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=53.26 E-value=1.2e+02 Score=26.32 Aligned_cols=43 Identities=14% Similarity=0.294 Sum_probs=28.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCh
Q 006624 342 LINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAP 387 (638)
Q Consensus 342 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 387 (638)
.+-.|.+.|.+++|.++++...+ .|+......-+....+.++.
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd~ 159 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKDP 159 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcccc
Confidence 45567888888888888888866 35555555555555444443
No 399
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=53.22 E-value=2.2e+02 Score=27.51 Aligned_cols=88 Identities=16% Similarity=0.052 Sum_probs=56.3
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc
Q 006624 168 NILGKAKMVNKALSIFYQIKSRK---CKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL 244 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (638)
+-|.+..++..|...|.+-++.. ...+.+.|+.-..+....|++..|+.-....+...+ .....|-.=..++...
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P--~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKP--THLKAYIRGAKCLLEL 166 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCc--chhhhhhhhhHHHHHH
Confidence 66777788888888887765542 233556677777777777888888888777777664 3344444444445555
Q ss_pred CChHHHHHHHHHH
Q 006624 245 GRDISAIRLFDEM 257 (638)
Q Consensus 245 g~~~~A~~~~~~m 257 (638)
.++++|....++.
T Consensus 167 e~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 167 ERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHhhh
Confidence 5555555555444
No 400
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=53.10 E-value=2.1e+02 Score=28.64 Aligned_cols=18 Identities=11% Similarity=0.196 Sum_probs=8.7
Q ss_pred HhcCChHHHHHHHHHHHh
Q 006624 136 DETRMIGVMWKSIQDMVR 153 (638)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~ 153 (638)
...++|..|.++++++..
T Consensus 142 ~n~~~y~aA~~~l~~l~~ 159 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLR 159 (379)
T ss_pred HhcCCHHHHHHHHHHHHH
Confidence 344455555555544444
No 401
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=53.03 E-value=1.1e+02 Score=23.99 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 409 TYSILIDGFCKTNRVEKAHLLLEEMEE 435 (638)
Q Consensus 409 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 435 (638)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477888889999999999999988876
No 402
>PHA02875 ankyrin repeat protein; Provisional
Probab=52.57 E-value=2.6e+02 Score=28.25 Aligned_cols=76 Identities=14% Similarity=0.158 Sum_probs=37.3
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC
Q 006624 241 FGKLGRDISAIRLFDEMKENGLQPTAKI--YTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVY--TYTELIKGLGRAGR 316 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~ 316 (638)
.+..|+.+- ++.+.+.|..|+... ..+.++..+..|+.+ +.+.+.+.|..|+.. ....-+...+..|+
T Consensus 9 A~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 344565543 444455676665433 334555556667664 334444555544432 11223445556666
Q ss_pred HHHHHHHH
Q 006624 317 VEDAYGLF 324 (638)
Q Consensus 317 ~~~A~~~~ 324 (638)
.+....++
T Consensus 81 ~~~v~~Ll 88 (413)
T PHA02875 81 VKAVEELL 88 (413)
T ss_pred HHHHHHHH
Confidence 65543333
No 403
>PRK11619 lytic murein transglycosylase; Provisional
Probab=52.54 E-value=3.4e+02 Score=29.53 Aligned_cols=81 Identities=15% Similarity=0.108 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006624 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
...-...+..+.+.++++....++.. .+.+...-.....++...|+.++|.+....+-..|. ......+.++.
T Consensus 99 ~~Lr~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~--~~p~~cd~l~~ 171 (644)
T PRK11619 99 RSLQSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK--SLPNACDKLFS 171 (644)
T ss_pred HHHHHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC--CCChHHHHHHH
Confidence 33444455556666676666653211 123555555666777778887777777777766665 34455666666
Q ss_pred HHHccCCh
Q 006624 240 AFGKLGRD 247 (638)
Q Consensus 240 ~~~~~g~~ 247 (638)
.+.+.|.+
T Consensus 172 ~~~~~g~l 179 (644)
T PRK11619 172 VWQQSGKQ 179 (644)
T ss_pred HHHHcCCC
Confidence 66655544
No 404
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=52.44 E-value=1.1e+02 Score=23.84 Aligned_cols=30 Identities=13% Similarity=0.369 Sum_probs=13.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 579 KPDAVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 579 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
.||...|.+| +-.+.|--+++...+.++..
T Consensus 68 ~pdL~p~~AL--~a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 68 YPDLEPWAAL--CAWKLGLASALESRLTRLAS 97 (116)
T ss_dssp -GGGHHHHHH--HHHHCT-HHHHHHHHHHHCT
T ss_pred CccHHHHHHH--HHHhhccHHHHHHHHHHHHh
Confidence 3455544443 23455555555555555543
No 405
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=52.44 E-value=33 Score=22.69 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=9.0
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 006624 591 CLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 591 ~~~~~g~~~~A~~~~~~m~ 609 (638)
++.+.|++++|.+..+.++
T Consensus 10 g~ykl~~Y~~A~~~~~~lL 28 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALL 28 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 4445555555555555544
No 406
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=52.04 E-value=99 Score=26.85 Aligned_cols=48 Identities=17% Similarity=0.341 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhCCCCCCH--H-----HHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006624 176 VNKALSIFYQIKSRKCKPTA--N-----TYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 176 ~~~A~~~~~~~~~~~~~~~~--~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
.+.|+.+++.+.+.-..|.. . .--..+..|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 35677777777654222210 1 111234567788888888888888776
No 407
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=51.41 E-value=2.1e+02 Score=26.79 Aligned_cols=146 Identities=14% Similarity=0.107 Sum_probs=63.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhCCCHH-HHHHHHHHHh---h--CCCCCCHHHHH
Q 006624 130 ALIRCLDETRMIGVMWKSIQDMV----RSTCVMGPSVLSEIVNILGKAKMVN-KALSIFYQIK---S--RKCKPTANTYN 199 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~---~--~~~~~~~~~~~ 199 (638)
.-...+.+.|++..+-++..-++ +.+.+.+......++..+...+.-+ +-.++.+.+. + .....++..+.
T Consensus 15 ~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~ 94 (260)
T PF04190_consen 15 SGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHH 94 (260)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHH
T ss_pred HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHH
Confidence 33445556666655555443332 2344555555555555554433211 1111111111 1 12234677777
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006624 200 SMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL 279 (638)
Q Consensus 200 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 279 (638)
.+...|.+.|++.+|...|-.-.. ++...+..++..+...|...++ |...-. .+-.|.-.
T Consensus 95 ~~a~~~~~e~~~~~A~~Hfl~~~~-----~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~R-aVL~yL~l 154 (260)
T PF04190_consen 95 LLAEKLWKEGNYYEAERHFLLGTD-----PSAFAYVMLLEEWSTKGYPSEA--------------DLFIAR-AVLQYLCL 154 (260)
T ss_dssp HHHHHHHHTT-HHHHHHHHHTS-H-----HHHHHHHHHHHHHHHHTSS--H--------------HHHHHH-HHHHHHHT
T ss_pred HHHHHHHhhccHHHHHHHHHhcCC-----hhHHHHHHHHHHHHHhcCCcch--------------hHHHHH-HHHHHHHh
Confidence 788888888888777766543211 3333332233333333333222 111111 22335556
Q ss_pred CCHHHHHHHHHHHHhC
Q 006624 280 GEVEKALGLVQEMKGK 295 (638)
Q Consensus 280 g~~~~A~~~~~~m~~~ 295 (638)
++...|...++...+.
T Consensus 155 ~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 155 GNLRDANELFDTFTSK 170 (260)
T ss_dssp TBHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 7777777777666543
No 408
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=51.04 E-value=32 Score=34.57 Aligned_cols=103 Identities=15% Similarity=0.093 Sum_probs=55.3
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC
Q 006624 168 NILGKAKMVNKALSIFYQIKSRKCKPTANT-YNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGR 246 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 246 (638)
+.+.+.+.++.|..+|.++.+. .||... |..-..++.+.+++..|+.-+..+++..+ .-...|..=..++.+.+.
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP--~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDP--TYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCc--hhhheeeeccHHHHhHHH
Confidence 3445556666777777666665 343333 33333566666666666666666666443 223333333444555555
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006624 247 DISAIRLFDEMKENGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 247 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (638)
+.+|+..|+.... +.|+..-....++-+
T Consensus 88 ~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 6666666666554 345555444444433
No 409
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=50.91 E-value=2.2e+02 Score=26.74 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006624 334 PDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSIL 413 (638)
Q Consensus 334 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 413 (638)
-|......+...|.+.|++.+|...|-.-.+ |+...+..++..+...+...+. |... ...
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~----~~~~~~~~ll~~~~~~~~~~e~---------------dlfi-~Ra 147 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTD----PSAFAYVMLLEEWSTKGYPSEA---------------DLFI-ARA 147 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-H----HHHHHHHHHHHHHHHHTSS--H---------------HHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCC----hhHHHHHHHHHHHHHhcCCcch---------------hHHH-HHH
Confidence 3667778888899999999888877643221 3333332233333333332222 2222 223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 006624 414 IDGFCKTNRVEKAHLLLEEMEEK 436 (638)
Q Consensus 414 ~~~~~~~~~~~~A~~~~~~~~~~ 436 (638)
+-.|.-.++...|...+....+.
T Consensus 148 VL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 148 VLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 33466778888888877766543
No 410
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=50.74 E-value=1.9e+02 Score=26.10 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=14.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 587 TILGCLSRAGMFEEAARLMKDMNAK 611 (638)
Q Consensus 587 ~l~~~~~~~g~~~~A~~~~~~m~~~ 611 (638)
.+.....+.|+.++|.++|.++...
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3444455666666666666666643
No 411
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=50.37 E-value=1.7e+02 Score=25.70 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=10.1
Q ss_pred hcCCHHHHHHHHHHHHh
Q 006624 278 KLGEVEKALGLVQEMKG 294 (638)
Q Consensus 278 ~~g~~~~A~~~~~~m~~ 294 (638)
+.|+++.|.+.++-|..
T Consensus 133 ~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 133 RKGSFEEAERFLKFMEK 149 (204)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 45666666666665554
No 412
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=50.02 E-value=3.9e+02 Score=29.44 Aligned_cols=57 Identities=9% Similarity=0.031 Sum_probs=30.2
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006624 559 KSGGPKRAMEIFTKMQHSEIKPDAV-SYNTILGCLSRAGMFEEAARLMKDMNAKGFEYD 616 (638)
Q Consensus 559 ~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 616 (638)
-.++.+.|+.+|+.....|.. +.. .|...++.=...|+...+..+++.....-..|+
T Consensus 474 l~~nmd~~R~iWn~imty~~~-~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~ 531 (881)
T KOG0128|consen 474 LLKNMDKAREIWNFIMTYGGG-SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPE 531 (881)
T ss_pred HhhchhhhhHhhhccccCCcc-hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCch
Confidence 345666777777666654322 222 444444444555666666665555554444443
No 413
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=49.91 E-value=2.4e+02 Score=28.27 Aligned_cols=54 Identities=15% Similarity=0.124 Sum_probs=29.6
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHHh--cCCHHHHHHHHHHHHh
Q 006624 451 GYGKAKRYEAANELFLELKEYCGCSSAR--VYAVMIKHFGK--CGRLSDAVDLFNEMKK 505 (638)
Q Consensus 451 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~--~g~~~~A~~~~~~m~~ 505 (638)
.+.+.+++..|.++++.+... .+++.. .+..+..+|.. .-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344666777777777776665 333333 33344444432 4456666666666554
No 414
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=49.57 E-value=2.1e+02 Score=26.27 Aligned_cols=112 Identities=8% Similarity=-0.077 Sum_probs=0.0
Q ss_pred HhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCCH----------HHHHHHHHHHHhCCCH
Q 006624 114 WAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRS-------TCVMGP----------SVLSEIVNILGKAKMV 176 (638)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~----------~~~~~l~~~~~~~g~~ 176 (638)
|.+....--..+.+..-=.+-+.+.|++.+|...|.+++.. ..+-++ ..+...-.++...|++
T Consensus 167 WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~ 246 (329)
T KOG0545|consen 167 WQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEY 246 (329)
T ss_pred ccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHH
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006624 177 NKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 177 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
-++++--.++...... |+.+|-.-..+.+..-+..+|.+-|...+...+
T Consensus 247 yevleh~seiL~~~~~-nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 247 YEVLEHCSEILRHHPG-NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
No 415
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=49.45 E-value=2.1e+02 Score=26.21 Aligned_cols=64 Identities=16% Similarity=-0.007 Sum_probs=33.9
Q ss_pred CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 006624 404 LPSPF-TYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLEL 468 (638)
Q Consensus 404 ~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 468 (638)
.|+.. -|..=+.++.+..+++.+.+=-...++.. +........+..++.....+++|+..+.+.
T Consensus 40 nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~-~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 40 NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD-PNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC-hHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 34442 33444555666666666655555555432 222334444555555666666666666665
No 416
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=48.58 E-value=1.8e+02 Score=25.55 Aligned_cols=18 Identities=50% Similarity=0.685 Sum_probs=14.3
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 006624 593 SRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 593 ~~~g~~~~A~~~~~~m~~ 610 (638)
.+.|+++.|.++++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 567899999988887763
No 417
>PRK10941 hypothetical protein; Provisional
Probab=47.84 E-value=2.5e+02 Score=26.51 Aligned_cols=59 Identities=12% Similarity=0.003 Sum_probs=34.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006624 271 TLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
.+-.+|.+.++++.|+++.+.+....+. +..-+.--.-.|.+.|.+..|..-++..++.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3445566666666666666666655443 4444544455566666666666666655554
No 418
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.59 E-value=1.5e+02 Score=24.00 Aligned_cols=43 Identities=21% Similarity=0.260 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 249 SAIRLFDEMKENGLQPT-AKIYTTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 249 ~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (638)
++.++|..|..+|+-.. +..|......+.+.|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77888888877765443 44566777777777888888777764
No 419
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=47.54 E-value=72 Score=20.53 Aligned_cols=30 Identities=17% Similarity=0.341 Sum_probs=14.3
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006624 243 KLGRDISAIRLFDEMKENGLQPTAKIYTTL 272 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 272 (638)
+.|-.+++..++++|.+.|+..+...+..+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 344444555555555555544444444433
No 420
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=47.24 E-value=1.9e+02 Score=26.67 Aligned_cols=60 Identities=7% Similarity=0.049 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHhh
Q 006624 129 MALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGK-AKMVNKALSIFYQIKS 188 (638)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~ 188 (638)
..+++..-+.|+++++...++.+...+...+..-.+.+..+|-. -|....+++++..+..
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 34677788888888888888888887777777766666666633 3455566666666544
No 421
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=47.17 E-value=3.9e+02 Score=29.03 Aligned_cols=250 Identities=14% Similarity=0.102 Sum_probs=0.0
Q ss_pred ccchHHHHHHHhhHHHHHHHhccCCCCCCCCCCcccccccccCCChhhHHHHHHHHHhcCCCCCcHHHHHHhhcccCChH
Q 006624 14 STLSCLCQRIKQTENEIVHMFQLSGPIDEMRNFPVSKKFARKDTSARKLDERFIRILKIFKWGPDAEKALEVLKMRVDHR 93 (638)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 93 (638)
|..|...-.+|++..+..|.++.-|..++ ..+..+.+..+..+-.... +......|...+.+++..
T Consensus 131 sk~Pnae~~vptlq~R~kq~Lk~vq~~ss-------------ah~REkflsD~RkAR~~y~-G~~l~~~L~~mR~RlDnp 196 (1226)
T KOG4279|consen 131 SKPPNAETNVPTLQHRMKQVLKSVQVESS-------------AHSREKFLSDLRKAREIYD-GDQLNDYLDKMRTRLDNP 196 (1226)
T ss_pred cCCCcccccCccHHHHHHHHHHHHHHhhH-------------HHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHhhcCCc
Q ss_pred HHHHHhccccchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH---------HH
Q 006624 94 LVHQVLNIDVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSV---------LS 164 (638)
Q Consensus 94 ~~~~vl~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---------~~ 164 (638)
.|. ...+-..++-.|....+++.++++.+++.+ .+.+... |.
T Consensus 197 ~VL---------------------------~~d~V~nlmlSyRDvQdY~amirLVe~Lk~--iP~t~~vve~~nv~f~Ya 247 (1226)
T KOG4279|consen 197 DVL---------------------------HPDTVSNLMLSYRDVQDYDAMIRLVEDLKR--IPDTLKVVETHNVRFHYA 247 (1226)
T ss_pred ccc---------------------------CHHHHHHHHhhhccccchHHHHHHHHHHHh--CcchhhhhccCceEEEee
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh---------cCCHhHHHHHHHHHHhCCCCCCCHHHHH
Q 006624 165 EIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ---------EGYYEKIHELYNEMCNEGNCFPDTVTYS 235 (638)
Q Consensus 165 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 235 (638)
-.++---+-|+-++|+...-.+.+..-...+..|-...+.|-. .+..+.|.++|++.-+..+..-....+.
T Consensus 248 FALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~a 327 (1226)
T KOG4279|consen 248 FALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLA 327 (1226)
T ss_pred ehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHH
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006624 236 ALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAG 315 (638)
Q Consensus 236 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 315 (638)
.|+.+..+.=.-..-++...--... .+.+.|.+++-.+++ |+.+|- .+-.-.+
T Consensus 328 tLL~aaG~~Fens~Elq~IgmkLn~--------------LlgrKG~leklq~YW----------dV~~y~---~asVLAn 380 (1226)
T KOG4279|consen 328 TLLRAAGEHFENSLELQQIGMKLNS--------------LLGRKGALEKLQEYW----------DVATYF---EASVLAN 380 (1226)
T ss_pred HHHHHhhhhccchHHHHHHHHHHHH--------------HhhccchHHHHHHHH----------hHHHhh---hhhhhcc
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 006624 316 RVEDAYGLFMNMLKEGCK 333 (638)
Q Consensus 316 ~~~~A~~~~~~~~~~~~~ 333 (638)
++.+|.+.-+.|.+...+
T Consensus 381 d~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 381 DYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred CHHHHHHHHHHHhccCCc
No 422
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=46.62 E-value=4.7e+02 Score=29.42 Aligned_cols=122 Identities=16% Similarity=0.063 Sum_probs=62.3
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006624 243 KLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYG 322 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 322 (638)
+..-..+|..+-.+|.+. -++||+++++.|..-.-.+.++.-.+. |.. ......++-.+
T Consensus 1159 k~D~r~da~klk~~me~q--------k~tli~AL~kKg~a~ak~e~l~g~~e~----dae---------ee~s~ld~~~e 1217 (1304)
T KOG1114|consen 1159 KEDTRPDAVKLKKKMEKQ--------KDTLIDALVKKGEAFAKYEALKGHKEQ----DAE---------EELSKLDSYNE 1217 (1304)
T ss_pred ccCCcchHHHHHHHHHHH--------HHHHHHHHHHhhhHHhhhhhhcccccc----cch---------hhhhhhhhHHH
Confidence 333344566776676653 256777777766422111111111110 111 11123444455
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-CCCCCCHhHHHHHHHHHHhcC
Q 006624 323 LFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEA-LQCKPNVVTYNTVIKSLFESK 385 (638)
Q Consensus 323 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~ll~~~~~~~ 385 (638)
.|.++.+.--.-|..++..-...+...|++..|.+++.++.+ .+-.++...|..++..+-..|
T Consensus 1218 ~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1218 NYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred HHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 566655542233555666666666777888888887777754 344555555555544443333
No 423
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=45.15 E-value=56 Score=30.90 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=16.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCC
Q 006624 234 YSALISAFGKLGRDISAIRLFDEMKENGL 262 (638)
Q Consensus 234 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 262 (638)
|+..|....+.||+++|++++++..+.|+
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34555555555555555555555555554
No 424
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.89 E-value=5.5e+02 Score=29.71 Aligned_cols=157 Identities=9% Similarity=-0.009 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC-----------------------CCCCCHHH-----HHHHHHHHHhCCCHHHHHH
Q 006624 130 ALIRCLDETRMIGVMWKSIQDMVRS-----------------------TCVMGPSV-----LSEIVNILGKAKMVNKALS 181 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~-----------------------~~~~~~~~-----~~~l~~~~~~~g~~~~A~~ 181 (638)
.+..+|...|...+|+..|.+.... |..+++.- |..+++.+-+.+-.+.+.+
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQ 1004 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQ 1004 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHH
Q ss_pred HHHHHhhC---CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh-----------
Q 006624 182 IFYQIKSR---KCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD----------- 247 (638)
Q Consensus 182 ~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------- 247 (638)
+-....+. ..+.-..+++.+.+-+...|.+.+|.+.+-+-.... .-.....-++-.++.+|..
T Consensus 1005 lA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdse---rrrdcLRqlvivLfecg~l~~L~~fpfigl 1081 (1480)
T KOG4521|consen 1005 LAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSE---RRRDCLRQLVIVLFECGELEALATFPFIGL 1081 (1480)
T ss_pred HHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHH---HHHHHHHHHHHHHHhccchHHHhhCCccch
Q ss_pred -HHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006624 248 -ISAIR-LFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLV 289 (638)
Q Consensus 248 -~~A~~-~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 289 (638)
++... +++..-+...-.....|+.|-..+...+++.+|-.+.
T Consensus 1082 ~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1082 EQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
No 425
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.88 E-value=23 Score=28.68 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=9.9
Q ss_pred CCHHHHHHHHHHhhhCCCCCC
Q 006624 561 GGPKRAMEIFTKMQHSEIKPD 581 (638)
Q Consensus 561 g~~~~A~~~~~~m~~~~~~p~ 581 (638)
|.-.+|..+|++|++.|-.||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 344444555555555444443
No 426
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=44.66 E-value=1.3e+02 Score=22.43 Aligned_cols=14 Identities=21% Similarity=0.342 Sum_probs=6.0
Q ss_pred CCHHHHHHHHHHHH
Q 006624 315 GRVEDAYGLFMNML 328 (638)
Q Consensus 315 g~~~~A~~~~~~~~ 328 (638)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444443
No 427
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=43.63 E-value=65 Score=32.49 Aligned_cols=104 Identities=15% Similarity=0.080 Sum_probs=59.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHH
Q 006624 415 DGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLS 494 (638)
Q Consensus 415 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 494 (638)
..+.+.+.++.|..++.++++.. +.+...|..-..++.+.+++..|..=+..+++.. +.....|-.=..++.+.+++.
T Consensus 12 n~~l~~~~fd~avdlysKaI~ld-pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELD-PNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcC-CcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHH
Confidence 34456677778888888777764 3333334434466777777777777666666642 222222333333444455666
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 006624 495 DAVDLFNEMKKLRCKPDVYTYNALMSGM 522 (638)
Q Consensus 495 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 522 (638)
+|+..|+.... +.|+..-....++-|
T Consensus 90 ~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 90 KALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 67777766655 356665555555544
No 428
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=43.47 E-value=1.9e+02 Score=24.08 Aligned_cols=50 Identities=20% Similarity=0.298 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcc
Q 006624 581 DAVSYNTILGCLSRAGM-FEEAARLMKDMNAKGFEYDQITYSSILEAVGKV 630 (638)
Q Consensus 581 ~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 630 (638)
+...|.+++.+..+..- ---+..+|+-|.+.+.+++..-|..+++++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 34456666666654444 334555666666656666666666666666553
No 429
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=43.46 E-value=1.6e+02 Score=23.10 Aligned_cols=26 Identities=19% Similarity=0.457 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 585 YNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 585 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
|..++.-|...|..++|++++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 45555555555555555555555544
No 430
>PRK13342 recombination factor protein RarA; Reviewed
Probab=42.78 E-value=3.8e+02 Score=27.25 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=13.9
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHH
Q 006624 245 GRDISAIRLFDEMKENGLQPTAKI 268 (638)
Q Consensus 245 g~~~~A~~~~~~m~~~g~~~~~~~ 268 (638)
++.+.|+..+..|.+.|..|....
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~ 267 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIA 267 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHH
Confidence 556666666666666665444333
No 431
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.44 E-value=18 Score=34.47 Aligned_cols=88 Identities=11% Similarity=-0.044 Sum_probs=46.8
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHH
Q 006624 172 KAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAI 251 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 251 (638)
..|.+++|++.|...++.+ .+....|..-..++.+.++...|+.-++.....++ .....|-.=..+-.-.|++.+|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~--Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINP--DSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCc--ccccccchhhHHHHHhhchHHHH
Confidence 3455666666666666553 22445555555666666666666666666665542 12222333233333445566666
Q ss_pred HHHHHHHHCCC
Q 006624 252 RLFDEMKENGL 262 (638)
Q Consensus 252 ~~~~~m~~~g~ 262 (638)
..|....+.++
T Consensus 203 ~dl~~a~kld~ 213 (377)
T KOG1308|consen 203 HDLALACKLDY 213 (377)
T ss_pred HHHHHHHhccc
Confidence 66555555543
No 432
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=42.13 E-value=1.5e+02 Score=31.32 Aligned_cols=75 Identities=16% Similarity=0.247 Sum_probs=54.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHhhhCCCCCCHHHHHHH
Q 006624 517 ALMSGMVRAGMIDDAYSLLRRMEED--GCVPDINSHNIILNGLAKSGGPK------RAMEIFTKMQHSEIKPDAVSYNTI 588 (638)
Q Consensus 517 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~------~A~~~~~~m~~~~~~p~~~~~~~l 588 (638)
+|+.+|...|++..+.++++..... |-+.-...+|..++.+.+.|.++ .|.+.++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7899999999999999999999875 22223567888888889988653 3444444433 45578888887
Q ss_pred HHHHHh
Q 006624 589 LGCLSR 594 (638)
Q Consensus 589 ~~~~~~ 594 (638)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 766544
No 433
>PF13006 Nterm_IS4: Insertion element 4 transposase N-terminal; InterPro: IPR024473 This entry represents the N-terminal domain of Insertion Element 4 transposases [].
Probab=42.03 E-value=1.6e+02 Score=22.64 Aligned_cols=83 Identities=14% Similarity=0.101 Sum_probs=56.5
Q ss_pred HHhhcccCChHHHHHHhccccchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 006624 83 LEVLKMRVDHRLVHQVLNIDVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSV 162 (638)
Q Consensus 83 l~~~~~~~~~~~~~~vl~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 162 (638)
+..+...+.+.++.+++...+... .+++.++.....|..+.-++.+...+.+.++-+...+..+......+
T Consensus 6 l~~l~~~ip~e~I~~al~~tg~a~---------~R~R~LPa~~vVwlvlamaLfr~~s~~~V~~~L~~~L~~~~~~~~~a 76 (98)
T PF13006_consen 6 LGVLTRVIPPELIDEALAATGRAT---------IRRRRLPAEVVVWLVLAMALFRDESYEEVVRRLDIGLPGGAEWPFPA 76 (98)
T ss_pred HHHHHHhCCHHHHHHHHHHhCchH---------hcCccCcHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCcCccccCCCC
Confidence 445555677888888776543322 23566788889999999999999999999999988877522233333
Q ss_pred HHHHHHHHHhCC
Q 006624 163 LSEIVNILGKAK 174 (638)
Q Consensus 163 ~~~l~~~~~~~g 174 (638)
-+++..+-.+.|
T Consensus 77 ~SaitqARqRLG 88 (98)
T PF13006_consen 77 PSAITQARQRLG 88 (98)
T ss_pred hHHHHHHHHHcC
Confidence 445555555544
No 434
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=41.82 E-value=1.1e+02 Score=20.98 Aligned_cols=48 Identities=25% Similarity=0.337 Sum_probs=24.2
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-----ccCChHHHHHH
Q 006624 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG-----KLGRDISAIRL 253 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~ 253 (638)
+...|++-+|.++++.+-...+. +....+..+|.... +.|+.+.|.++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~-~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPG-PERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-C-CHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCc-chHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 44567777777777776653322 33444444444332 34555555443
No 435
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.66 E-value=56 Score=30.89 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=24.7
Q ss_pred CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 006624 579 KPDAVS-YNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITY 620 (638)
Q Consensus 579 ~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 620 (638)
.||..+ |+..|....+.||+++|++++++..+.|+.--..||
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 344433 446666666677777777777776666655444443
No 436
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=40.57 E-value=1.9e+02 Score=23.06 Aligned_cols=72 Identities=21% Similarity=0.260 Sum_probs=38.9
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCC------------------CCCHHHHHHHHHHHHh
Q 006624 217 LYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGL------------------QPTAKIYTTLVSIYFK 278 (638)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~------------------~~~~~~~~~li~~~~~ 278 (638)
.|..+.......|..++...+...++-.. ..|..++.+|.+.|. .+-...+...+..+..
T Consensus 5 ~y~~L~~~~~~~~~~vtl~elA~~l~cS~--Rn~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~~~~~~~~~~~~~~l~ 82 (115)
T PF12793_consen 5 QYQRLWQHYGGQPVEVTLDELAELLFCSR--RNARTLLKKMQEEGWITWQPGRGRGNRSQLTFLKSPEELLEQQAEELLE 82 (115)
T ss_pred HHHHHHHHcCCCCcceeHHHHHHHhCCCH--HHHHHHHHHHHHCCCeeeeCCCCCCCCCeeEEeeCHHHHHHHHHHHHHH
Confidence 34444443333355556666665554332 346777777777652 1113344555566666
Q ss_pred cCCHHHHHHHHH
Q 006624 279 LGEVEKALGLVQ 290 (638)
Q Consensus 279 ~g~~~~A~~~~~ 290 (638)
.|+++.|.++++
T Consensus 83 ~g~~~~a~~ll~ 94 (115)
T PF12793_consen 83 QGKYEQALQLLD 94 (115)
T ss_pred cCCHHHHHHHHH
Confidence 677777766665
No 437
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=40.51 E-value=1.6e+02 Score=27.34 Aligned_cols=61 Identities=20% Similarity=0.259 Sum_probs=39.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 233 TYSALISAFGKLGRDISAIRLFDEMKE----NG-LQPTAKIYTTLVSIYFKLGEVEKALGLVQEMK 293 (638)
Q Consensus 233 ~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 293 (638)
..-.+...|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.++.+.+.-++.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 334556667777777777777776642 22 23445566677777778888877777665553
No 438
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=40.27 E-value=1.4e+02 Score=24.98 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=13.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 006624 588 ILGCLSRAGMFEEAARLMKDMNAKGFEYDQ 617 (638)
Q Consensus 588 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 617 (638)
++..+.+.++.-.|.++++++.+.+...+.
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~isl 55 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISL 55 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCH
Confidence 334444444444455555555444333333
No 439
>PRK11619 lytic murein transglycosylase; Provisional
Probab=39.41 E-value=5.4e+02 Score=28.06 Aligned_cols=399 Identities=9% Similarity=-0.023 Sum_probs=184.4
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHH
Q 006624 117 RRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTAN 196 (638)
Q Consensus 117 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 196 (638)
+.++.+.....-...+..+.+.+++.+..+.+. ..+.+...--....+....|+.++|......+-..|.. .+.
T Consensus 91 ~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~ 164 (644)
T PRK11619 91 ANPTLPPARSLQSRFVNELARREDWRGLLAFSP-----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPN 164 (644)
T ss_pred HCCCCchHHHHHHHHHHHHHHccCHHHHHHhcC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CCh
Confidence 455555555555566667777777776665321 12445555566667777788877777777776555433 566
Q ss_pred HHHHHHHHHHhcCCHh--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH---------CCCCCC
Q 006624 197 TYNSMILMLMQEGYYE--KIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE---------NGLQPT 265 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~---------~g~~~~ 265 (638)
.++.++..+.+.|... ...+-++.+...+. ...-..+...+. .+.....+.+..+.+ ..++++
T Consensus 165 ~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~----~~lA~~l~~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~ 238 (644)
T PRK11619 165 ACDKLFSVWQQSGKQDPLAYLERIRLAMKAGN----TGLVTYLAKQLP--ADYQTIASALIKLQNDPNTVETFARTTGPT 238 (644)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC----HHHHHHHHHhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCC
Confidence 7777777777666543 33333444444322 222222222110 000000001101100 011223
Q ss_pred HHHHHHHHHHH--HhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006624 266 AKIYTTLVSIY--FKLGEVEKALGLVQEMKGKG-CALT--VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLIN 340 (638)
Q Consensus 266 ~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 340 (638)
...-..++.++ ....+.+.|..++....... ..+. ...+..+.......+...+|...++...... .|.....
T Consensus 239 ~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e 316 (644)
T PRK11619 239 DFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLE 316 (644)
T ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHH
Confidence 21111111122 13445678888887764432 2111 2223334333333333566666666554332 2444445
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006624 341 NLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKT 420 (638)
Q Consensus 341 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 420 (638)
.-+....+.++++.+...+..|.... .-...-..=+-+++...|+..++ ..+|+..... .+ -|..+.. .+.
T Consensus 317 ~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A-~~~~~~~a~~---~~--fYG~LAa--~~L 387 (644)
T PRK11619 317 RRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEA-EEILRQLMQQ---RG--FYPMVAA--QRL 387 (644)
T ss_pred HHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHH-HHHHHHHhcC---CC--cHHHHHH--HHc
Confidence 55555557888888888888774422 11223333344444555666555 6666666431 11 2222221 111
Q ss_pred CCHHHH-HHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 006624 421 NRVEKA-HLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDL 499 (638)
Q Consensus 421 ~~~~~A-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 499 (638)
|..-.- ...... ....+..+ .-..-+..+...|....|...+..+... .+......+...-...|.++.++..
T Consensus 388 g~~~~~~~~~~~~-~~~~~~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~ 461 (644)
T PRK11619 388 GEEYPLKIDKAPK-PDSALTQG--PEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQA 461 (644)
T ss_pred CCCCCCCCCCCCc-hhhhhccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 211000 000000 00000000 1122334556677888888777777764 2333444555555566776666655
Q ss_pred HHHHHhC-----CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 006624 500 FNEMKKL-----RCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDI 547 (638)
Q Consensus 500 ~~~m~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 547 (638)
....... .. | ..|...+..+.+.-.++.++-.---..++++.|+.
T Consensus 462 ~~~~~~~~~~~~rf-p--~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a 511 (644)
T PRK11619 462 TIAGKLWDHLEERF-P--LAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKA 511 (644)
T ss_pred HhhchhHHHHHHhC-C--cchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCC
Confidence 5432211 11 1 12444555555444555544333333344555543
No 440
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=38.09 E-value=3.6e+02 Score=25.60 Aligned_cols=49 Identities=18% Similarity=0.108 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhCCC
Q 006624 175 MVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ----EGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 175 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 226 (638)
+..+|..+|....+.| .......|...|.. ..+..+|..+|+++.+.|.
T Consensus 92 ~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~ 144 (292)
T COG0790 92 DKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGN 144 (292)
T ss_pred cHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCC
Confidence 3555666666554443 23333334444443 2355666666666666554
No 441
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=37.91 E-value=1.7e+02 Score=21.84 Aligned_cols=14 Identities=21% Similarity=0.302 Sum_probs=5.8
Q ss_pred CCHHHHHHHHHHHH
Q 006624 280 GEVEKALGLVQEMK 293 (638)
Q Consensus 280 g~~~~A~~~~~~m~ 293 (638)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 33444444444443
No 442
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=37.79 E-value=2e+02 Score=22.53 Aligned_cols=81 Identities=7% Similarity=0.021 Sum_probs=44.3
Q ss_pred ccchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 006624 102 DVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALS 181 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 181 (638)
....++|..+..|....++. ...+-..-+..+...|+|++|. .. -.....||...|.++ +-.+.|.-+++..
T Consensus 19 ~HcH~EA~tIa~wL~~~~~~--~E~v~lIr~~sLmNrG~Yq~AL--l~--~~~~~~pdL~p~~AL--~a~klGL~~~~e~ 90 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGEM--EEVVALIRLSSLMNRGDYQEAL--LL--PQCHCYPDLEPWAAL--CAWKLGLASALES 90 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTTT--HHHHHHHHHHHHHHTT-HHHHH--HH--HTTS--GGGHHHHHH--HHHHCT-HHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCcH--HHHHHHHHHHHHHhhHHHHHHH--Hh--cccCCCccHHHHHHH--HHHhhccHHHHHH
Confidence 34467788888888777642 3344445556677778887771 11 112234555555444 3356777777777
Q ss_pred HHHHHhhCC
Q 006624 182 IFYQIKSRK 190 (638)
Q Consensus 182 ~~~~~~~~~ 190 (638)
.+.++...|
T Consensus 91 ~l~rla~~g 99 (116)
T PF09477_consen 91 RLTRLASSG 99 (116)
T ss_dssp HHHHHCT-S
T ss_pred HHHHHHhCC
Confidence 777666553
No 443
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.56 E-value=57 Score=31.37 Aligned_cols=92 Identities=23% Similarity=0.152 Sum_probs=65.1
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHH
Q 006624 207 QEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTA-KIYTTLVSIYFKLGEVEKA 285 (638)
Q Consensus 207 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A 285 (638)
..|.++.|++.|...+..++ +....|..-.+++.+.++...|++=+....+. .||. .-|-.--.+-.-.|++++|
T Consensus 126 n~G~~~~ai~~~t~ai~lnp--~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNP--PLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred cCcchhhhhcccccccccCC--chhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHH
Confidence 46789999999999988776 67777777778888888888888888777764 3442 2233333334456788888
Q ss_pred HHHHHHHHhCCCCCCHH
Q 006624 286 LGLVQEMKGKGCALTVY 302 (638)
Q Consensus 286 ~~~~~~m~~~~~~~~~~ 302 (638)
...+....+.+..+...
T Consensus 202 a~dl~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANS 218 (377)
T ss_pred HHHHHHHHhccccHHHH
Confidence 88888887776654433
No 444
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=37.38 E-value=1.7e+02 Score=27.18 Aligned_cols=62 Identities=27% Similarity=0.415 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 267 KIYTTLVSIYFKLGEVEKALGLVQEMKGK----G-CALTVYTYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
.....+...|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.++.+.+.-++.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34456788899999999999999988532 2 23456677788899999999999888766654
No 445
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=37.12 E-value=6.2e+02 Score=28.10 Aligned_cols=36 Identities=19% Similarity=0.065 Sum_probs=21.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 006624 588 ILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILE 625 (638)
Q Consensus 588 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 625 (638)
.....-+..+...++..|..|....++ ..|...|++
T Consensus 794 ~~~~l~~lr~~a~~i~~~a~~I~yRmp--s~t~~rL~~ 829 (835)
T KOG2168|consen 794 SETKLDRLRDQARAIVMMAAMIPYRMP--SQTNSRLVQ 829 (835)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCC--hHHHHHHHH
Confidence 334445555667777888888755433 335555554
No 446
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=36.80 E-value=3.7e+02 Score=25.41 Aligned_cols=98 Identities=9% Similarity=0.072 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHH----HHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCH----
Q 006624 336 IVLINNLINVLGRAGRLEDALKLFNKM----EALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSP---- 407 (638)
Q Consensus 336 ~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---- 407 (638)
..++..+...|++.++.+.+.++.++. ...|.+.|+.....-+...+......+...+..+.|.+.|..-+.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 344555555566665555555444433 223444444444433333333333333334444445554432221
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 408 FTYSILIDGFCKTNRVEKAHLLLEEMEE 435 (638)
Q Consensus 408 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 435 (638)
.+|.-+ .+....++.+|-.++.+...
T Consensus 195 K~Y~Gi--~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 195 KVYKGI--FKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHH--HHHHHHhhHHHHHHHHHHhc
Confidence 122111 11233456666666665543
No 447
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=36.45 E-value=4.8e+02 Score=26.64 Aligned_cols=123 Identities=14% Similarity=0.144 Sum_probs=82.0
Q ss_pred HHhcCCHhHHHH-HHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006624 205 LMQEGYYEKIHE-LYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 205 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 283 (638)
-...|+.-.|-+ +++-++.... .|+.....+.| +...|+++.+.+.+....+. +.....+...++....+.|+++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~-~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQ-DPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCC-CchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHH
Confidence 344677666544 4444444333 36655544433 45678899888888766543 3345677788888888999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006624 284 KALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGC 332 (638)
Q Consensus 284 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 332 (638)
+|...-+.|....+. +........-..-..|-++++...|+++...+.
T Consensus 375 ~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 375 EALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 999998888877665 555544444445566778888888888876543
No 448
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=36.44 E-value=1.8e+02 Score=29.20 Aligned_cols=59 Identities=15% Similarity=0.259 Sum_probs=32.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHH--CC----CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 234 YSALISAFGKLGRDISAIRLFDEMKE--NG----LQ-PTAKIYTTLVSIYFKLGEVEKALGLVQEM 292 (638)
Q Consensus 234 ~~~l~~~~~~~g~~~~A~~~~~~m~~--~g----~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m 292 (638)
...|++..+-.||+..|+++++.+.- .+ ++ -.+.++..+.-+|.-.+++.+|.+.|...
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777765421 11 11 12334455555555555565665555544
No 449
>PRK09857 putative transposase; Provisional
Probab=35.43 E-value=2.5e+02 Score=26.87 Aligned_cols=64 Identities=19% Similarity=0.169 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006624 552 IILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYD 616 (638)
Q Consensus 552 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 616 (638)
.++.-..+.|+.++-.++++.+.+. ..+.....-++..-+.+.|.-+++.++.++|...|+.++
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3333334445555555555555432 112222333455555555665666677777776666544
No 450
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=35.05 E-value=4.2e+02 Score=26.71 Aligned_cols=61 Identities=23% Similarity=0.219 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC--C-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 268 IYTTLVSIYFKLGEVEKALGLVQEMKGK--G-----CALTVYTYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 268 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
+...|++..+-.|++..|+++++.+.-. + +.-.+.+|--+.-+|...+++.+|.+.|...+
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777888888888887665321 0 11123345555666777777777777776654
No 451
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=34.90 E-value=1.9e+02 Score=24.23 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=21.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 006624 307 LIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAG 350 (638)
Q Consensus 307 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 350 (638)
+++.+...++.-.|.++++++.+.++..+..|...-++.+...|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 44444444444555555555555554444444433444444333
No 452
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=34.88 E-value=54 Score=23.70 Aligned_cols=38 Identities=11% Similarity=0.271 Sum_probs=21.0
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC
Q 006624 559 KSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAG 596 (638)
Q Consensus 559 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 596 (638)
-.|+.+.+.+++++..+.|..|.......+.-+..+-|
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 44566666666666666565555555545555544443
No 453
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.60 E-value=7e+02 Score=27.94 Aligned_cols=98 Identities=13% Similarity=0.108 Sum_probs=58.5
Q ss_pred HhcCCHHHHHHHHHHHHhC------CCCCCHhhHHHHHHHHH---------------HcCCHHHHHHHHHHHHHCCCCCC
Q 006624 488 GKCGRLSDAVDLFNEMKKL------RCKPDVYTYNALMSGMV---------------RAGMIDDAYSLLRRMEEDGCVPD 546 (638)
Q Consensus 488 ~~~g~~~~A~~~~~~m~~~------~~~p~~~~~~~l~~~~~---------------~~g~~~~A~~~~~~~~~~~~~p~ 546 (638)
...|++.+|.+.|....-. .-+-+..-...++..+. ..+..+++.++-.-.....+.|-
T Consensus 1002 tt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~ 1081 (1202)
T KOG0292|consen 1002 TTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPM 1081 (1202)
T ss_pred hccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcH
Confidence 3568888888888876432 01112222222332221 12345666555555555556665
Q ss_pred H--HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH
Q 006624 547 I--NSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSY 585 (638)
Q Consensus 547 ~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 585 (638)
. .+....+..+.+.+++..|..+-.++.+.+..|+..--
T Consensus 1082 H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q 1122 (1202)
T KOG0292|consen 1082 HRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQ 1122 (1202)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHH
Confidence 3 34566778888999999999999998887666665433
No 454
>PRK09857 putative transposase; Provisional
Probab=34.55 E-value=4.2e+02 Score=25.37 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=31.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006624 234 YSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCA 298 (638)
Q Consensus 234 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 298 (638)
+..++....+.|+.++-.++++.+.+. .+.......+++.-+.+.|.-++++++..+|...|..
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344444444555555555555555443 2222333334455555555555555555555555544
No 455
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=34.52 E-value=2.5e+02 Score=26.77 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=40.8
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----------cCCHHHHH
Q 006624 287 GLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGR----------AGRLEDAL 356 (638)
Q Consensus 287 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----------~g~~~~A~ 356 (638)
++++.+...++.|.-..+.-+.-.+.+.=.+.+.+.+|+.+... ..-|..|+..||. .|++...+
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~nm 338 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVNM 338 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 45566666666666665555555555555666666666666542 2224444444432 47777777
Q ss_pred HHHHHH
Q 006624 357 KLFNKM 362 (638)
Q Consensus 357 ~~~~~~ 362 (638)
++++..
T Consensus 339 kLLQ~y 344 (370)
T KOG4567|consen 339 KLLQNY 344 (370)
T ss_pred HHHhcC
Confidence 777653
No 456
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=34.47 E-value=84 Score=17.25 Aligned_cols=13 Identities=15% Similarity=0.442 Sum_probs=5.5
Q ss_pred HhHHHHHHHHHHh
Q 006624 211 YEKIHELYNEMCN 223 (638)
Q Consensus 211 ~~~A~~~~~~~~~ 223 (638)
.+.|..+|+++..
T Consensus 3 ~~~~r~i~e~~l~ 15 (33)
T smart00386 3 IERARKIYERALE 15 (33)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 457
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=34.43 E-value=4.2e+02 Score=25.33 Aligned_cols=54 Identities=30% Similarity=0.339 Sum_probs=36.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006624 164 SEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 164 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
..++....+.++..+....+..+. ....-...+..+...|+|..|+++..+..+
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345555666666666666666664 344455677777888999999888887655
No 458
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=34.24 E-value=1.4e+02 Score=28.90 Aligned_cols=47 Identities=15% Similarity=0.110 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILG 171 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 171 (638)
...|-++++.+...|.++.++.+|++++..|..|-...-..+++.+-
T Consensus 140 aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 140 AKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45666666666666766666677776666666665555555555443
No 459
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=34.19 E-value=2.3e+02 Score=27.01 Aligned_cols=56 Identities=13% Similarity=0.233 Sum_probs=30.7
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006624 498 DLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLA 558 (638)
Q Consensus 498 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 558 (638)
++++.+...++.|.-+.+.-+.-.+.+.=.+.+.+.+|+.+.. |..-|..|+..||
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHH
Confidence 4555555566666655555555455555566666666666654 2222444554444
No 460
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=34.01 E-value=3.6e+02 Score=24.39 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHCCCCC----C-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 006624 529 DDAYSLLRRMEEDGCVP----D-INSHNIILNGLAKSGGPKRAMEIFTKMQHSE 577 (638)
Q Consensus 529 ~~A~~~~~~~~~~~~~p----~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 577 (638)
..|.+.|.+..+..-.| + ....-.++....+.|+.++|.+.|.++...+
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 45666666666543222 2 2333345666778899999999999988753
No 461
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=33.96 E-value=3.3e+02 Score=24.00 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 477 ARVYAVMIKHFGKCGRLSDAVDLFN 501 (638)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~ 501 (638)
-...|.....|.+.|.++.|+.+++
T Consensus 181 Cqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 181 CQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred hhhHHHHHHHHHHcCCchHHHHHHh
Confidence 3445555666666777777766665
No 462
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=33.70 E-value=4.6e+02 Score=25.52 Aligned_cols=115 Identities=15% Similarity=0.098 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh------CCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 006624 141 IGVMWKSIQDMVRSTCVMGPSVLSEIVNILGK------AKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKI 214 (638)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 214 (638)
.+++..++......+ .|.+......|.++.. .-++..-..+|+-+....+.|- ++.|- ..+....--.+.+
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPv-V~LNR-AVAla~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPV-VTLNR-AVALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCe-EeehH-HHHHHHhhhHHhH
Confidence 455666666655554 3566655555544422 1244455555555555433321 22221 1222223334445
Q ss_pred HHHHHHHHhCCCCCCCHHHH-HHHHHHHHccCChHHHHHHHHHHHH
Q 006624 215 HELYNEMCNEGNCFPDTVTY-SALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
+...+-+...+.. .+-..| ..=...+.+.|+.++|..-|+....
T Consensus 349 La~ve~L~~~~~L-~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~ 393 (415)
T COG4941 349 LAMVEALLARPRL-DGYHLYHAARADLLARLGRVEEARAAYDRAIA 393 (415)
T ss_pred HHHHHHhhccccc-ccccccHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 5555555443221 111122 2223344455555555555555554
No 463
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=33.29 E-value=2.2e+02 Score=27.35 Aligned_cols=106 Identities=8% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCH
Q 006624 133 RCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSR-KCKPTANTYNSMILMLMQEGYY 211 (638)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~ 211 (638)
..|.++.+.+.--...+.+.+.+...-..+-..+.-+..+.|+..+|.+.|..+.+. ....-......++.++....-+
T Consensus 248 ~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAY 327 (556)
T KOG3807|consen 248 TIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAY 327 (556)
T ss_pred HHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 006624 212 EKIHELYNEMCNEGNCFPDTVTYSALI 238 (638)
Q Consensus 212 ~~A~~~~~~~~~~~~~~~~~~~~~~l~ 238 (638)
.++..++.+.-+....+.-...|++.+
T Consensus 328 ADvqavLakYDdislPkSA~icYTaAL 354 (556)
T KOG3807|consen 328 ADVQAVLAKYDDISLPKSAAICYTAAL 354 (556)
T ss_pred HHHHHHHHhhccccCcchHHHHHHHHH
No 464
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=33.10 E-value=1e+02 Score=17.90 Aligned_cols=22 Identities=5% Similarity=-0.194 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHH
Q 006624 141 IGVMWKSIQDMVRSTCVMGPSVLS 164 (638)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~ 164 (638)
++.|..+|+.++. +.|++.+|.
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHH
Confidence 4455555555554 334444443
No 465
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=32.89 E-value=4e+02 Score=24.56 Aligned_cols=40 Identities=13% Similarity=0.017 Sum_probs=23.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 006624 413 LIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGY 452 (638)
Q Consensus 413 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 452 (638)
++..+-+.++++++...++++...+...+..-.+.+..+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 4555667777777777777777766555555555554444
No 466
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=32.80 E-value=97 Score=21.62 Aligned_cols=47 Identities=21% Similarity=0.209 Sum_probs=22.2
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006624 511 DVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLA 558 (638)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 558 (638)
....++-++..+++..-.++++..+.++.+.|. .+..+|.--++.++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 334445555555555555555555555555543 24444444444433
No 467
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=32.79 E-value=2.9e+02 Score=29.45 Aligned_cols=75 Identities=7% Similarity=-0.005 Sum_probs=51.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhCCCHH------HHHHHHHHHhhCCCCCCHHHHHHH
Q 006624 130 ALIRCLDETRMIGVMWKSIQDMVRS--TCVMGPSVLSEIVNILGKAKMVN------KALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
+++.+|..+|++-.+.++++.+... |-..-...+|..++.+.+.|.++ .|.+.+++.. +..|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7889999999999999999888653 22233456777788888888654 3444444443 34577777777
Q ss_pred HHHHHh
Q 006624 202 ILMLMQ 207 (638)
Q Consensus 202 ~~~~~~ 207 (638)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 666544
No 468
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=32.39 E-value=4.8e+02 Score=25.50 Aligned_cols=44 Identities=9% Similarity=0.113 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 006624 584 SYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
-|-++++.....|.+++++.+|+++...|-.|=...-..+++.+
T Consensus 142 YWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 142 YWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 34555555555566556666666665555555555444444444
No 469
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=31.50 E-value=8.6e+02 Score=28.03 Aligned_cols=134 Identities=13% Similarity=0.173 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 006624 456 KRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCG--RLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYS 533 (638)
Q Consensus 456 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 533 (638)
+++....+.+....+. ......-...++.+|.+.+ ++++|+....++.+. +...-...+.-.+- .-.+.+
T Consensus 792 ~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~----~~~~ae~alkyl~f---LvDvn~ 863 (928)
T PF04762_consen 792 SKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE----DPESAEEALKYLCF---LVDVNK 863 (928)
T ss_pred cHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc----ChHHHHHHHhHhee---eccHHH
Confidence 3444444444444432 1223444567778888887 888888888888764 11111111111111 122333
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 534 LLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDM 608 (638)
Q Consensus 534 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 608 (638)
+|+.++.. -|... .++-+-..+.|+++=+-+++++.+. .|+..-| -|+ .+.|++++|++.+.++
T Consensus 864 Ly~~ALG~---YDl~L--al~VAq~SQkDPKEYLPfL~~L~~l--~~~~rry--~ID--~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 864 LYDVALGT---YDLEL--ALMVAQQSQKDPKEYLPFLQELQKL--PPLYRRY--KID--DHLKRYEKALRHLSAC 927 (928)
T ss_pred HHHHHhhh---cCHHH--HHHHHHHhccChHHHHHHHHHHHhC--Chhheee--eHh--hhhCCHHHHHHHHHhh
Confidence 44444331 12211 2334445566777777777777643 3322111 222 3558888888877654
No 470
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=31.42 E-value=6.8e+02 Score=27.50 Aligned_cols=84 Identities=17% Similarity=0.156 Sum_probs=46.0
Q ss_pred HHHHHHHHHHH-HhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---C----------CCHHHHHHHHHHHH
Q 006624 493 LSDAVDLFNEM-KKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGC---V----------PDINSHNIILNGLA 558 (638)
Q Consensus 493 ~~~A~~~~~~m-~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~----------p~~~~~~~l~~~~~ 558 (638)
.++....+... .+.|+.-+......++... .|+...|+.+++++...|. . .+......++.++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH
Confidence 34445555444 3446666666666665543 6889999999888765321 1 01112222333332
Q ss_pred hcCCHHHHHHHHHHhhhCCCC
Q 006624 559 KSGGPKRAMEIFTKMQHSEIK 579 (638)
Q Consensus 559 ~~g~~~~A~~~~~~m~~~~~~ 579 (638)
.++...++.+++++...|..
T Consensus 258 -~~d~~~al~~l~~L~~~G~d 277 (709)
T PRK08691 258 -NQDGAALLAKAQEMAACAVG 277 (709)
T ss_pred -cCCHHHHHHHHHHHHHhCCC
Confidence 35666666666666655543
No 471
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=30.71 E-value=5.5e+02 Score=25.53 Aligned_cols=124 Identities=10% Similarity=0.001 Sum_probs=74.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH---HccCChHHHHHHHHHHHHCCCCCCHHH
Q 006624 192 KPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF---GKLGRDISAIRLFDEMKENGLQPTAKI 268 (638)
Q Consensus 192 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~g~~~~~~~ 268 (638)
+-.+.++..+...+..+|+.+.|.++.++.+-... .++......+ ...|... ......-|...
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e-----~~~~~~F~~~~~~~~~g~~r---------L~~~~~eNR~f 102 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFE-----RAFHPSFSPFRSNLTSGNCR---------LDYRRPENRQF 102 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----HHHHHHhhhhhcccccCccc---------cCCccccchHH
Confidence 34778888888888899998888888888754211 0111111000 0001000 00001123333
Q ss_pred HHH---HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 006624 269 YTT---LVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLG-RAGRVEDAYGLFMNMLK 329 (638)
Q Consensus 269 ~~~---li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~ 329 (638)
|.+ .|..+.+.|.+..|+++.+-+...++.-|+.....+|+.|+ +.++++--+++.+....
T Consensus 103 flal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 103 FLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 333 34567788888999988888888877667777777777765 66777777777776554
No 472
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=29.74 E-value=2.4e+02 Score=21.15 Aligned_cols=33 Identities=30% Similarity=0.272 Sum_probs=15.3
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 006624 439 PPCPAAYCSLINGYGKAKRYEAANELFLELKEY 471 (638)
Q Consensus 439 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 471 (638)
|.|......+...+...|++++|.+.+-.+.+.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344444444555555555555555555544443
No 473
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=29.38 E-value=1.9e+02 Score=22.56 Aligned_cols=23 Identities=17% Similarity=0.415 Sum_probs=12.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 006624 481 AVMIKHFGKCGRLSDAVDLFNEM 503 (638)
Q Consensus 481 ~~li~~~~~~g~~~~A~~~~~~m 503 (638)
..++.-|...|+.++|...+.++
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh
Confidence 34445555666666666666654
No 474
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=29.18 E-value=4e+02 Score=23.51 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=17.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 271 TLVSIYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m~~~ 295 (638)
+++..|-+..++.+..++++.|-+.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777777777777654
No 475
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=28.85 E-value=5.9e+02 Score=25.31 Aligned_cols=56 Identities=13% Similarity=0.067 Sum_probs=31.4
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-ccCChHHHHHHHHHHH
Q 006624 202 ILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG-KLGRDISAIRLFDEMK 258 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~ 258 (638)
+..+.+.|-+..|+++.+-+...++. .|......+|+.|+ +.++++--+++.+...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~-~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPD-EDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCC-CCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 34455666666666666666666553 35555555555554 4455555555555443
No 476
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=28.61 E-value=3.4e+02 Score=22.44 Aligned_cols=69 Identities=7% Similarity=0.033 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 157 VMGPSVLSEIVNILGKAK---MVNKALSIFYQIKS-RKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.++..+-..+.-++.+.. ++.+-+.+++.+.+ ..+....+....|.-++.+.+++++++.+.+.+.+..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 344444455555555544 34455667777765 2222233444556667778888888888888877755
No 477
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=28.09 E-value=7.1e+02 Score=29.25 Aligned_cols=155 Identities=17% Similarity=0.125 Sum_probs=88.2
Q ss_pred HHHHhcCCHhHHHH------HHHHHH-hCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH-------HHCCCCCCHHH
Q 006624 203 LMLMQEGYYEKIHE------LYNEMC-NEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEM-------KENGLQPTAKI 268 (638)
Q Consensus 203 ~~~~~~g~~~~A~~------~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-------~~~g~~~~~~~ 268 (638)
......|.+.+|.+ ++.... ...+ +....|..+...+-+.|+.++|+..-... ....-.-+...
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~--~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~ 1017 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHP--EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLA 1017 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcch--hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHH
Confidence 33444566666665 555332 2222 44566778888888888888888765433 22222224556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC--CC
Q 006624 269 YTTLVSIYFKLGEVEKALGLVQEMKGK-----GC-AL-TVYTYTELIKGLGRAGRVEDAYGLFMNMLKE-----GC--KP 334 (638)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~--~p 334 (638)
|..+.......++...|...+...... |. .| ...+++.+-..+...++++.|.++.+.+... |. -+
T Consensus 1018 y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~ 1097 (1236)
T KOG1839|consen 1018 YGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELE 1097 (1236)
T ss_pred hhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchh
Confidence 666666666777777777777665432 22 23 3344444444445557888888888877653 11 12
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Q 006624 335 DIVLINNLINVLGRAGRLEDALKLF 359 (638)
Q Consensus 335 ~~~~~~~l~~~~~~~g~~~~A~~~~ 359 (638)
...++..+.+.+...+++..|....
T Consensus 1098 ~~~~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1098 TALSYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 3445566655555556555554433
No 478
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=27.30 E-value=9.9e+02 Score=27.44 Aligned_cols=127 Identities=12% Similarity=-0.001 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 006624 405 PSPFTYSILIDGFCKTNRVEK-AHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVM 483 (638)
Q Consensus 405 ~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 483 (638)
++...-...+.++...+..+. +...+..+.. .+++..-...+.++.+.|..+.+...+..+.+. ++..+-...
T Consensus 754 ~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~A 827 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGA 827 (897)
T ss_pred CCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHH
Confidence 345555555566666554332 3344444443 345777777777787777665554444444432 455566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006624 484 IKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED 541 (638)
Q Consensus 484 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 541 (638)
+.++...+. +++...+-.+.+ .|+...-...+.++.+.+....+...+..+.+.
T Consensus 828 a~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D 881 (897)
T PRK13800 828 ARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALTD 881 (897)
T ss_pred HHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhC
Confidence 777777665 345555555554 356666666666666653345666777766663
No 479
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=26.39 E-value=2.9e+02 Score=23.78 Aligned_cols=45 Identities=9% Similarity=0.234 Sum_probs=20.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 006624 166 IVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY 210 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 210 (638)
++..+...++.-.|.++++++.+.++..+..|-...+..+.+.|-
T Consensus 31 IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 31 VLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 333333334444455555555555444444444444444444443
No 480
>PHA03100 ankyrin repeat protein; Provisional
Probab=26.15 E-value=6.6e+02 Score=25.95 Aligned_cols=9 Identities=22% Similarity=0.656 Sum_probs=4.0
Q ss_pred HHHHHHhcC
Q 006624 272 LVSIYFKLG 280 (638)
Q Consensus 272 li~~~~~~g 280 (638)
.+...+..|
T Consensus 144 ~L~~A~~~~ 152 (480)
T PHA03100 144 LLHLYLESN 152 (480)
T ss_pred HHHHHHHcC
Confidence 344444444
No 481
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=25.79 E-value=9.7e+02 Score=26.79 Aligned_cols=92 Identities=13% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-------------CCCCHHHHHHHHHHHHh
Q 006624 529 DDAYSLLRRMEED-GCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSE-------------IKPDAVSYNTILGCLSR 594 (638)
Q Consensus 529 ~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-------------~~p~~~~~~~l~~~~~~ 594 (638)
++..+.+++..+. |+..+......+.. ...|++.+|+.++++....+ -.+|...+..++.++..
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~~ 258 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALAA 258 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHHc
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 006624 595 AGMFEEAARLMKDMNAKGFEYDQITYSSI 623 (638)
Q Consensus 595 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 623 (638)
|+..+++.+++++...|+.+....-..+
T Consensus 259 -~d~~~~l~~~~~l~~~g~~~~~~l~dLl 286 (830)
T PRK07003 259 -GDGPEILAVADEMALRSLSFSTALQDLA 286 (830)
T ss_pred -CCHHHHHHHHHHHHHhCCCHHHHHHHHH
No 482
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=25.78 E-value=3.8e+02 Score=22.14 Aligned_cols=67 Identities=13% Similarity=0.085 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 006624 299 LTVYTYTELIKGLGRAG---RVEDAYGLFMNMLKE-GCKPDIVLINNLINVLGRAGRLEDALKLFNKMEAL 365 (638)
Q Consensus 299 ~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 365 (638)
++..+--.+.-++.+.. ++.+.+.+++++.+. ...-.......|.-++.+.++++.+.++.+.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 45555555556666554 455677788888762 22223334445666778888888888888887763
No 483
>PRK13342 recombination factor protein RarA; Reviewed
Probab=25.72 E-value=7.2e+02 Score=25.26 Aligned_cols=14 Identities=21% Similarity=0.223 Sum_probs=5.9
Q ss_pred cCCHHHHHHHHHHH
Q 006624 314 AGRVEDAYGLFMNM 327 (638)
Q Consensus 314 ~g~~~~A~~~~~~~ 327 (638)
.|+...++.+++.+
T Consensus 187 ~Gd~R~aln~Le~~ 200 (413)
T PRK13342 187 NGDARRALNLLELA 200 (413)
T ss_pred CCCHHHHHHHHHHH
Confidence 34444444444433
No 484
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=25.66 E-value=1.7e+02 Score=23.05 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 006624 177 NKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY 210 (638)
Q Consensus 177 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 210 (638)
-.|.++++++.+.+...+..|-...++.+.+.|-
T Consensus 17 ~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 17 LTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred CCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 3444444444444433344444444444444443
No 485
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=25.33 E-value=8.7e+02 Score=28.56 Aligned_cols=155 Identities=15% Similarity=0.038 Sum_probs=93.6
Q ss_pred HHhcCCHHHHHH------HHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH-------HcCCCCcHHHHHHH
Q 006624 417 FCKTNRVEKAHL------LLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELK-------EYCGCSSARVYAVM 483 (638)
Q Consensus 417 ~~~~~~~~~A~~------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~~l 483 (638)
....|.+.+|.+ ++......-.++....|..+...+.+.++.++|...-.... ....+.+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 344555665555 55533332235667788889999999999999887655432 22223344556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC--CCCHHH
Q 006624 484 IKHFGKCGRLSDAVDLFNEMKKL-----R-CKPD-VYTYNALMSGMVRAGMIDDAYSLLRRMEED-----GC--VPDINS 549 (638)
Q Consensus 484 i~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~--~p~~~~ 549 (638)
......++....|+..+.+.... | ..|. ..+++.+-..+...++++.|.++.+.+.+. |. -.+..+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 66666677788888887776543 1 1333 334444444444557888898888888753 21 124556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 006624 550 HNIILNGLAKSGGPKRAMEIFT 571 (638)
Q Consensus 550 ~~~l~~~~~~~g~~~~A~~~~~ 571 (638)
+..+...+...+++..|....+
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHHh
Confidence 6666666666666666554433
No 486
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.31 E-value=7.1e+02 Score=25.03 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=14.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHH
Q 006624 233 TYSALISAFGKLGRDISAIRLFDEM 257 (638)
Q Consensus 233 ~~~~l~~~~~~~g~~~~A~~~~~~m 257 (638)
.+.-+...|..+|+++.|++.+.+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~ 176 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRA 176 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhh
Confidence 3455555566666666666666553
No 487
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=25.24 E-value=3.3e+02 Score=21.20 Aligned_cols=20 Identities=30% Similarity=0.645 Sum_probs=8.9
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 006624 272 LVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~ 291 (638)
++..|...|+.++|...+.+
T Consensus 8 ~l~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHH
Confidence 33344444555555544444
No 488
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=25.13 E-value=5.3e+02 Score=23.50 Aligned_cols=98 Identities=12% Similarity=0.108 Sum_probs=48.6
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 006624 369 PNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLP---SPFTY--SILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPA 443 (638)
Q Consensus 369 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 443 (638)
+....+|.|+--|.-..+..+++..+ ....|+.| |..++ ..-|......|+.+.|++...++...-+..|..
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~F---a~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKF---AKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHh---ccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 44445555555555555555553332 22233333 22222 234555677888888888877765433333432
Q ss_pred hHHHHHH----HHHccCCHHHHHHHHHHHH
Q 006624 444 AYCSLIN----GYGKAKRYEAANELFLELK 469 (638)
Q Consensus 444 ~~~~li~----~~~~~g~~~~A~~~~~~~~ 469 (638)
.+-.+.. -..+.|..++|+++.+.-.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 2222221 1345566666666655443
No 489
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=24.89 E-value=3.4e+02 Score=23.41 Aligned_cols=42 Identities=12% Similarity=0.093 Sum_probs=20.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 006624 309 KGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAG 350 (638)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 350 (638)
..+...++.-.|.++++.+.+.+...+..|....+..+.+.|
T Consensus 33 ~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 33 RLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 333333444455555555555554445444444444444444
No 490
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=24.56 E-value=1.8e+02 Score=26.43 Aligned_cols=53 Identities=11% Similarity=0.085 Sum_probs=25.5
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 172 KAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+.++.+.|.+++.+..+.-+. ....|-.+...--+.|+++.|.+-|++..+..
T Consensus 7 ~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred ccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 444555555555555443211 33444444444455555555555555555544
No 491
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=24.55 E-value=3e+02 Score=20.51 Aligned_cols=43 Identities=7% Similarity=0.213 Sum_probs=29.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 252 RLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKG 294 (638)
Q Consensus 252 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 294 (638)
++|+-....|+..|...|..+++.+.-+=-.+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6777777777777777777777766666666666666666653
No 492
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=24.27 E-value=1e+02 Score=19.68 Aligned_cols=41 Identities=7% Similarity=-0.048 Sum_probs=26.1
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006624 112 FKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMV 152 (638)
Q Consensus 112 f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 152 (638)
.+|+.+...||.....|..+.+=+-.++....+..+++++.
T Consensus 2 A~~i~~D~~FPK~~~~~~eI~~Yle~~~~~~~~~~~fd~aw 42 (46)
T PF06855_consen 2 ANDIFQDHSFPKQETDFDEISSYLESNYDYLESMEIFDRAW 42 (46)
T ss_dssp HHHHHTSTTS-TT-SSHHHHHHHHHCHCCHHCCHHHHHHHH
T ss_pred hhhhhhCcCCCCCCCCHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 34555677777777777777777776777666666666554
No 493
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=23.64 E-value=1.4e+02 Score=23.70 Aligned_cols=45 Identities=11% Similarity=0.102 Sum_probs=22.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 006624 130 ALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK 174 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 174 (638)
.++..+...+.+-.|.++++.+.+.+...+..|....++.+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 344444444445555555555555555555554444445555544
No 494
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=23.59 E-value=1.8e+02 Score=20.29 Aligned_cols=29 Identities=10% Similarity=0.126 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.++.++...++..-.++++..+.++.+.|
T Consensus 10 l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 10 LSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444444444444444444444444443
No 495
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.55 E-value=8.8e+02 Score=25.54 Aligned_cols=85 Identities=16% Similarity=0.126 Sum_probs=45.4
Q ss_pred HHHHHHHHH-HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC------------CHHHHHHHHHHHHh
Q 006624 494 SDAVDLFNE-MKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGC-VP------------DINSHNIILNGLAK 559 (638)
Q Consensus 494 ~~A~~~~~~-m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p------------~~~~~~~l~~~~~~ 559 (638)
++....+.. +.+.|+..+......++.. ..|+...|..+++++...|- .. +......++.++ .
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al-~ 257 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEAL-A 257 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHH-H
Confidence 333334333 3445666666565555443 36888899988887765431 11 111122233332 3
Q ss_pred cCCHHHHHHHHHHhhhCCCCCC
Q 006624 560 SGGPKRAMEIFTKMQHSEIKPD 581 (638)
Q Consensus 560 ~g~~~~A~~~~~~m~~~~~~p~ 581 (638)
.|+.+.+..+++++...|..|.
T Consensus 258 ~~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 258 AKAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred cCCHHHHHHHHHHHHHcCCCHH
Confidence 3666666666666666665443
No 496
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=23.50 E-value=1.1e+03 Score=26.75 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=31.9
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006624 511 DVYTYNALMSGMVRAGMIDDAYSLLRRMEE-DGCVPDINSHNIILNGLAKSGGPKRAMEIFTKM 573 (638)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 573 (638)
|..++..-..-+...|++..|.+++.++.+ .|-.++...|-.++..+...|-- ....+++.+
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~-H~~t~~~~~ 1292 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN-HLATFVKNW 1292 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch-HhHHHHhhh
Confidence 333444334444556666666666666665 34455555555555555555433 333344443
No 497
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=23.42 E-value=3.1e+02 Score=21.66 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006624 236 ALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 236 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
++++.+.++...++|+++++-|.++| ..+...-+.|-..+.+.|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~~kG 109 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILVKKG 109 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhh
No 498
>PRK09462 fur ferric uptake regulator; Provisional
Probab=23.29 E-value=4.2e+02 Score=22.08 Aligned_cols=60 Identities=15% Similarity=0.120 Sum_probs=34.2
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC
Q 006624 397 KMKANGVLPSPFTYSILIDGFCKT-NRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKR 457 (638)
Q Consensus 397 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 457 (638)
.+.+.|...+..- ..++..+... +..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 7 ~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 3445555554432 2334444443 4566777788877777655566666666666666553
No 499
>PRK09462 fur ferric uptake regulator; Provisional
Probab=23.27 E-value=4e+02 Score=22.23 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 006624 319 DAYGLFMNMLKEGCKPDIVLINNLINVLGRAG 350 (638)
Q Consensus 319 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 350 (638)
.|.++++.+.+.+...+..|....+..+...|
T Consensus 35 sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 35 SAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34444444444433333333333333343333
No 500
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.93 E-value=1.1e+03 Score=26.46 Aligned_cols=49 Identities=18% Similarity=0.184 Sum_probs=27.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 274 SIYFKLGEVEKALGLVQEMKGKGCALTV--YTYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
..|...|++++|+++-+.- |+. ..+..-.+.|.+.+++..|-++|-++.
T Consensus 366 k~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 4555667777776654322 221 223333455666677777777776663
Done!